Query 003804
Match_columns 794
No_of_seqs 300 out of 2366
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469 Elongation factor 2 [T 100.0 6E-165 1E-169 1294.0 45.9 780 9-794 20-842 (842)
2 PLN00116 translation elongatio 100.0 5E-147 1E-151 1323.7 80.6 784 7-794 18-843 (843)
3 PTZ00416 elongation factor 2; 100.0 5E-146 1E-150 1312.0 76.3 776 7-794 18-836 (836)
4 COG0480 FusA Translation elong 100.0 2E-127 5E-132 1106.2 62.6 661 7-780 9-697 (697)
5 KOG0468 U5 snRNP-specific prot 100.0 2E-126 3E-131 1031.4 54.3 768 7-793 127-954 (971)
6 KOG0465 Mitochondrial elongati 100.0 3E-126 7E-131 1028.5 41.3 652 7-772 38-719 (721)
7 PRK07560 elongation factor EF- 100.0 4E-120 8E-125 1080.1 65.6 671 7-792 19-731 (731)
8 KOG0467 Translation elongation 100.0 4E-119 9E-124 992.7 44.8 758 6-794 7-884 (887)
9 TIGR00490 aEF-2 translation el 100.0 7E-116 2E-120 1040.5 62.3 662 7-783 18-720 (720)
10 PRK12739 elongation factor G; 100.0 4E-113 1E-117 1014.9 67.9 658 7-774 7-688 (691)
11 PRK00007 elongation factor G; 100.0 1E-112 3E-117 1009.9 66.9 659 6-773 8-690 (693)
12 TIGR00484 EF-G translation elo 100.0 4E-110 9E-115 990.5 63.2 654 7-773 9-687 (689)
13 PRK13351 elongation factor G; 100.0 5E-107 1E-111 966.9 66.5 656 7-771 7-685 (687)
14 PRK12740 elongation factor G; 100.0 2E-102 4E-107 926.8 64.1 638 17-760 1-662 (668)
15 KOG0464 Elongation factor G [T 100.0 1.1E-95 2E-100 755.0 29.8 647 7-759 36-740 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 1.1E-77 2.3E-82 693.1 50.0 463 9-760 2-475 (594)
17 PRK10218 GTP-binding protein; 100.0 1E-75 2.2E-80 675.1 48.3 465 7-760 4-480 (607)
18 PRK05433 GTP-binding protein L 100.0 1.5E-73 3.3E-78 661.3 47.5 464 8-756 7-481 (600)
19 TIGR01393 lepA GTP-binding pro 100.0 1.7E-72 3.8E-77 651.8 51.9 464 8-755 3-477 (595)
20 COG1217 TypA Predicted membran 100.0 1.1E-68 2.3E-73 564.8 37.8 463 9-760 6-479 (603)
21 KOG0462 Elongation factor-type 100.0 1.1E-65 2.5E-70 552.3 32.8 466 8-755 60-533 (650)
22 PRK00741 prfC peptide chain re 100.0 7E-65 1.5E-69 579.7 39.5 433 7-562 9-473 (526)
23 TIGR00503 prfC peptide chain r 100.0 1.2E-62 2.5E-67 561.6 38.9 431 7-558 10-470 (527)
24 COG0481 LepA Membrane GTPase L 100.0 1.2E-60 2.6E-65 505.4 35.9 468 7-755 8-483 (603)
25 COG4108 PrfC Peptide chain rel 100.0 1.5E-50 3.3E-55 425.8 24.4 430 8-555 12-468 (528)
26 cd01885 EF2 EF2 (for archaea a 100.0 2.9E-39 6.3E-44 330.8 22.3 203 10-221 2-209 (222)
27 cd01886 EF-G Elongation factor 100.0 3.3E-37 7.1E-42 325.6 21.6 253 10-335 1-270 (270)
28 cd04168 TetM_like Tet(M)-like 100.0 1.2E-33 2.6E-38 293.4 22.5 222 10-335 1-237 (237)
29 CHL00071 tufA elongation facto 100.0 1.1E-32 2.5E-37 309.0 28.8 295 5-463 9-307 (409)
30 COG5256 TEF1 Translation elong 100.0 1.3E-32 2.8E-37 291.8 25.4 287 6-464 5-317 (428)
31 cd04169 RF3 RF3 subfamily. Pe 100.0 6.9E-33 1.5E-37 292.5 20.8 245 8-335 2-267 (267)
32 PRK12736 elongation factor Tu; 100.0 9.3E-32 2E-36 300.1 28.1 284 6-463 10-297 (394)
33 PLN00043 elongation factor 1-a 100.0 1.4E-31 3.1E-36 301.4 26.1 288 5-462 4-317 (447)
34 PRK12735 elongation factor Tu; 100.0 7.1E-31 1.5E-35 293.3 28.4 286 6-463 10-299 (396)
35 PLN03126 Elongation factor Tu; 100.0 6.8E-31 1.5E-35 296.9 28.0 295 5-463 78-376 (478)
36 cd04170 EF-G_bact Elongation f 100.0 1.4E-31 3.1E-36 284.4 20.8 252 10-335 1-268 (268)
37 PTZ00141 elongation factor 1- 100.0 5.6E-31 1.2E-35 296.9 26.0 288 5-462 4-317 (446)
38 TIGR00485 EF-Tu translation el 100.0 1.8E-30 4E-35 290.1 28.4 283 6-462 10-296 (394)
39 KOG0460 Mitochondrial translat 100.0 1.4E-31 3E-36 274.0 15.8 284 8-464 52-342 (449)
40 PRK00049 elongation factor Tu; 100.0 4.4E-30 9.5E-35 286.7 28.5 286 6-463 10-299 (396)
41 PRK05306 infB translation init 100.0 1.4E-29 3.1E-34 298.3 30.6 314 6-529 288-628 (787)
42 PLN03127 Elongation factor Tu; 100.0 2.3E-29 4.9E-34 283.3 28.9 287 6-462 59-349 (447)
43 COG0050 TufB GTPases - transla 100.0 3.9E-30 8.5E-35 258.8 18.7 284 5-463 7-297 (394)
44 PRK12317 elongation factor 1-a 100.0 5.2E-29 1.1E-33 281.7 26.0 287 5-463 3-310 (425)
45 TIGR02034 CysN sulfate adenyly 100.0 8.2E-29 1.8E-33 277.3 26.5 128 9-155 1-146 (406)
46 cd04167 Snu114p Snu114p subfam 100.0 6.2E-29 1.3E-33 255.2 21.2 196 10-221 2-200 (213)
47 PRK05124 cysN sulfate adenylyl 100.0 5.6E-28 1.2E-32 274.5 27.0 131 6-155 25-173 (474)
48 TIGR00487 IF-2 translation ini 100.0 3.1E-27 6.6E-32 273.1 31.4 312 7-529 86-426 (587)
49 TIGR00483 EF-1_alpha translati 100.0 1.2E-27 2.6E-32 270.6 26.0 286 5-462 4-311 (426)
50 PTZ00327 eukaryotic translatio 100.0 3E-27 6.6E-32 265.3 27.8 133 7-155 33-184 (460)
51 KOG0458 Elongation factor 1 al 99.9 1E-26 2.3E-31 254.8 23.2 284 8-460 177-487 (603)
52 CHL00189 infB translation init 99.9 3.6E-26 7.9E-31 267.2 28.8 317 7-529 243-583 (742)
53 PRK05506 bifunctional sulfate 99.9 4.7E-26 1E-30 269.1 26.5 131 6-155 22-170 (632)
54 PF00009 GTP_EFTU: Elongation 99.9 1.2E-26 2.6E-31 233.5 12.4 168 7-212 2-175 (188)
55 PRK10512 selenocysteinyl-tRNA- 99.9 3.5E-25 7.6E-30 258.0 25.4 111 17-155 6-117 (614)
56 cd01683 EF2_IV_snRNP EF-2_doma 99.9 2.6E-26 5.6E-31 226.2 13.1 133 551-683 1-178 (178)
57 PRK04000 translation initiatio 99.9 1.1E-24 2.3E-29 244.2 26.9 135 5-155 6-152 (411)
58 cd01884 EF_Tu EF-Tu subfamily. 99.9 8E-26 1.7E-30 227.9 16.0 168 8-211 2-170 (195)
59 TIGR03680 eif2g_arch translati 99.9 2.5E-24 5.5E-29 241.3 27.6 133 7-155 3-147 (406)
60 COG5257 GCD11 Translation init 99.9 1.4E-23 3E-28 214.3 26.3 334 6-527 8-362 (415)
61 TIGR00475 selB selenocysteine- 99.9 3.1E-23 6.7E-28 241.2 23.9 115 9-155 1-116 (581)
62 COG2895 CysN GTPases - Sulfate 99.9 4.3E-23 9.2E-28 213.5 22.0 149 7-182 5-171 (431)
63 cd01883 EF1_alpha Eukaryotic e 99.9 1.1E-23 2.4E-28 217.0 14.0 170 10-212 1-193 (219)
64 KOG1145 Mitochondrial translat 99.9 1E-22 2.2E-27 220.7 20.7 126 7-170 152-277 (683)
65 COG0532 InfB Translation initi 99.9 1.3E-21 2.9E-26 215.2 27.8 130 7-172 4-133 (509)
66 cd04166 CysN_ATPS CysN_ATPS su 99.9 4.3E-23 9.3E-28 211.0 14.6 127 10-155 1-143 (208)
67 COG3276 SelB Selenocysteine-sp 99.9 3E-22 6.6E-27 214.7 21.2 125 17-176 6-131 (447)
68 COG5258 GTPBP1 GTPase [General 99.9 1.5E-21 3.2E-26 203.3 19.3 302 8-457 117-430 (527)
69 cd01681 aeEF2_snRNP_like_IV Th 99.9 3.5E-22 7.7E-27 198.2 12.2 132 551-682 1-177 (177)
70 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 1.3E-22 2.9E-27 173.7 7.8 80 678-757 1-80 (80)
71 PRK04004 translation initiatio 99.9 3E-20 6.4E-25 215.7 27.2 64 92-155 73-136 (586)
72 KOG0459 Polypeptide release fa 99.9 5.8E-22 1.3E-26 207.9 10.7 152 6-182 77-251 (501)
73 cd01891 TypA_BipA TypA (tyrosi 99.8 9.5E-20 2.1E-24 184.3 17.7 143 9-174 3-145 (194)
74 smart00838 EFG_C Elongation fa 99.8 6.9E-21 1.5E-25 165.5 7.3 83 676-760 1-83 (85)
75 PF00679 EFG_C: Elongation fac 99.8 8E-21 1.7E-25 166.5 7.5 85 675-760 1-85 (89)
76 KOG0461 Selenocysteine-specifi 99.8 2.5E-19 5.4E-24 184.2 17.8 128 9-155 8-135 (522)
77 cd04096 eEF2_snRNP_like_C eEF2 99.8 2.3E-20 5E-25 160.3 7.8 80 678-757 1-80 (80)
78 cd01890 LepA LepA subfamily. 99.8 4.8E-19 1E-23 176.2 17.0 131 10-155 2-132 (179)
79 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 4E-20 8.7E-25 158.0 7.7 78 678-757 1-78 (78)
80 TIGR00491 aIF-2 translation in 99.8 5.4E-18 1.2E-22 196.1 27.7 128 9-155 5-134 (590)
81 PF14492 EFG_II: Elongation Fa 99.8 6.7E-20 1.5E-24 154.6 7.5 73 477-551 2-75 (75)
82 cd03711 Tet_C Tet_C: C-terminu 99.8 6.9E-20 1.5E-24 156.5 7.1 78 678-757 1-78 (78)
83 cd01888 eIF2_gamma eIF2-gamma 99.8 1.9E-19 4.1E-24 183.4 11.4 131 9-155 1-150 (203)
84 cd04165 GTPBP1_like GTPBP1-lik 99.8 4.7E-19 1E-23 182.5 14.1 140 10-155 1-151 (224)
85 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 1.5E-19 3.3E-24 154.5 7.4 78 678-757 1-78 (78)
86 cd03710 BipA_TypA_C BipA_TypA_ 99.8 3.1E-19 6.7E-24 152.7 8.3 78 678-756 1-78 (79)
87 cd01889 SelB_euk SelB subfamil 99.8 2.2E-18 4.7E-23 174.1 16.0 133 9-155 1-133 (192)
88 cd01514 Elongation_Factor_C El 99.8 7.1E-19 1.5E-23 150.8 7.6 79 678-757 1-79 (79)
89 cd03709 lepA_C lepA_C: This fa 99.8 1E-18 2.2E-23 149.8 7.7 78 678-756 1-79 (80)
90 cd00881 GTP_translation_factor 99.7 5.9E-17 1.3E-21 162.1 16.1 127 10-155 1-127 (189)
91 PF03764 EFG_IV: Elongation fa 99.7 2E-17 4.2E-22 153.9 10.3 112 552-673 1-120 (120)
92 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 1.1E-16 2.3E-21 141.9 11.3 94 368-461 1-94 (94)
93 KOG0463 GTP-binding protein GP 99.7 1E-16 2.2E-21 166.5 11.1 310 6-464 131-457 (641)
94 PRK14845 translation initiatio 99.7 6.1E-15 1.3E-19 178.3 27.7 125 10-155 465-591 (1049)
95 cd01684 Tet_like_IV EF-G_domai 99.7 9.9E-17 2.1E-21 147.4 9.5 108 554-673 1-115 (115)
96 cd03690 Tet_II Tet_II: This su 99.7 3.7E-16 8E-21 135.6 10.0 82 366-460 2-84 (85)
97 cd04171 SelB SelB subfamily. 99.7 1.2E-15 2.6E-20 148.9 14.3 115 10-155 2-117 (164)
98 cd04092 mtEFG2_II_like mtEFG2_ 99.6 3.2E-15 7E-20 129.4 9.8 82 368-461 1-83 (83)
99 cd01680 EFG_like_IV Elongation 99.6 6.1E-15 1.3E-19 136.3 11.1 112 556-673 1-116 (116)
100 cd03700 eEF2_snRNP_like_II EF2 99.6 1.6E-14 3.5E-19 127.8 11.0 90 368-460 1-91 (93)
101 cd03689 RF3_II RF3_II: this su 99.6 9.7E-15 2.1E-19 126.5 9.3 80 370-461 1-84 (85)
102 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 1.3E-14 2.8E-19 125.6 9.6 81 368-460 1-82 (83)
103 COG1160 Predicted GTPases [Gen 99.6 1.8E-14 3.9E-19 156.8 12.5 115 7-155 177-302 (444)
104 PRK00093 GTP-binding protein D 99.6 3.5E-14 7.5E-19 161.8 15.0 115 7-155 172-297 (435)
105 KOG1143 Predicted translation 99.6 3.8E-14 8.2E-19 147.6 13.6 144 6-155 165-316 (591)
106 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 3.7E-14 8E-19 139.2 12.8 113 11-155 3-115 (168)
107 cd04091 mtEFG1_II_like mtEFG1_ 99.5 2.7E-14 5.8E-19 123.0 9.9 79 368-460 1-80 (81)
108 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.5 2.7E-14 5.9E-19 131.8 9.8 111 556-673 1-116 (116)
109 cd01693 mtEFG2_like_IV mtEF-G2 99.5 3.6E-14 7.9E-19 131.8 10.7 113 554-673 1-120 (120)
110 KOG1144 Translation initiation 99.5 3.4E-14 7.5E-19 158.7 11.6 129 8-155 475-605 (1064)
111 TIGR03594 GTPase_EngA ribosome 99.5 3.7E-14 8E-19 161.3 12.1 115 7-155 171-296 (429)
112 cd03691 BipA_TypA_II BipA_TypA 99.5 1.5E-13 3.3E-18 119.7 10.5 84 368-460 1-85 (86)
113 COG1159 Era GTPase [General fu 99.5 5E-13 1.1E-17 138.3 16.0 116 6-155 4-127 (298)
114 KOG0466 Translation initiation 99.5 1.1E-13 2.4E-18 140.8 10.1 146 8-175 38-206 (466)
115 cd01895 EngA2 EngA2 subfamily. 99.5 8E-13 1.7E-17 129.8 15.0 114 8-155 2-126 (174)
116 cd01894 EngA1 EngA1 subfamily. 99.5 2.9E-13 6.3E-18 130.9 10.4 108 17-155 3-118 (157)
117 cd04160 Arfrp1 Arfrp1 subfamil 99.4 4.2E-13 9.1E-18 131.7 11.3 115 10-155 1-120 (167)
118 cd03699 lepA_II lepA_II: This 99.4 4.8E-13 1E-17 116.5 9.3 81 368-461 1-86 (86)
119 PRK03003 GTP-binding protein D 99.4 5.7E-12 1.2E-16 144.6 20.5 114 8-155 211-335 (472)
120 PRK09554 feoB ferrous iron tra 99.4 5.5E-12 1.2E-16 150.8 19.7 111 8-155 3-125 (772)
121 PRK15494 era GTPase Era; Provi 99.4 1.9E-12 4E-17 142.0 14.2 116 6-155 50-173 (339)
122 COG1160 Predicted GTPases [Gen 99.4 8.5E-13 1.8E-17 143.9 11.3 113 9-155 4-125 (444)
123 COG2229 Predicted GTPase [Gene 99.4 3E-12 6.4E-17 123.0 12.9 124 8-155 10-134 (187)
124 TIGR00436 era GTP-binding prot 99.4 3.1E-12 6.6E-17 136.3 14.4 111 10-155 2-120 (270)
125 cd01864 Rab19 Rab19 subfamily. 99.4 1.9E-12 4.2E-17 126.9 10.7 115 8-155 3-121 (165)
126 TIGR03594 GTPase_EngA ribosome 99.4 2E-12 4.3E-17 147.2 11.7 112 10-155 1-120 (429)
127 cd01879 FeoB Ferrous iron tran 99.3 3.5E-12 7.7E-17 123.6 10.4 105 17-155 2-114 (158)
128 TIGR03598 GTPase_YsxC ribosome 99.3 1.2E-11 2.6E-16 123.4 14.3 113 7-155 17-142 (179)
129 PRK09518 bifunctional cytidyla 99.3 5.1E-12 1.1E-16 151.7 13.7 114 8-155 450-574 (712)
130 TIGR00231 small_GTP small GTP- 99.3 2.9E-12 6.4E-17 123.0 8.8 114 8-155 1-121 (161)
131 cd04164 trmE TrmE (MnmE, ThdF, 99.3 6.4E-12 1.4E-16 121.4 10.9 111 9-155 2-120 (157)
132 cd04124 RabL2 RabL2 subfamily. 99.3 1.1E-11 2.5E-16 121.2 12.7 114 9-155 1-117 (161)
133 PRK00093 GTP-binding protein D 99.3 6.4E-12 1.4E-16 143.3 12.3 113 9-155 2-122 (435)
134 PF02421 FeoB_N: Ferrous iron 99.3 3.9E-12 8.4E-17 122.5 8.7 110 9-155 1-118 (156)
135 cd04145 M_R_Ras_like M-Ras/R-R 99.3 1.1E-11 2.5E-16 121.0 12.0 113 8-155 2-120 (164)
136 PRK03003 GTP-binding protein D 99.3 7.6E-12 1.6E-16 143.6 12.4 113 9-155 39-159 (472)
137 cd01898 Obg Obg subfamily. Th 99.3 1.6E-11 3.4E-16 120.8 12.7 112 10-155 2-127 (170)
138 PRK00089 era GTPase Era; Revie 99.3 3E-11 6.4E-16 130.3 15.8 115 7-155 4-126 (292)
139 cd04113 Rab4 Rab4 subfamily. 99.3 9.8E-12 2.1E-16 121.3 10.5 114 9-155 1-118 (161)
140 cd04115 Rab33B_Rab33A Rab33B/R 99.3 1.3E-11 2.7E-16 122.0 11.0 115 8-155 2-122 (170)
141 cd04105 SR_beta Signal recogni 99.3 2.9E-11 6.3E-16 123.2 13.9 130 10-177 2-141 (203)
142 cd04114 Rab30 Rab30 subfamily. 99.3 1.8E-11 3.9E-16 120.3 11.9 114 7-155 6-125 (169)
143 cd00878 Arf_Arl Arf (ADP-ribos 99.3 1.6E-11 3.4E-16 119.5 11.0 108 10-155 1-113 (158)
144 cd04154 Arl2 Arl2 subfamily. 99.3 2E-11 4.4E-16 120.9 11.8 111 7-155 13-128 (173)
145 cd04161 Arl2l1_Arl13_like Arl2 99.3 2.4E-11 5.1E-16 119.8 12.2 107 11-155 2-113 (167)
146 cd04151 Arl1 Arl1 subfamily. 99.3 2.4E-11 5.2E-16 118.3 12.1 108 10-155 1-113 (158)
147 cd04106 Rab23_lke Rab23-like s 99.3 1.4E-11 3E-16 120.1 10.3 114 9-155 1-119 (162)
148 cd01866 Rab2 Rab2 subfamily. 99.3 2E-11 4.3E-16 120.3 11.0 115 8-155 4-122 (168)
149 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 3.2E-11 6.9E-16 119.7 12.5 111 7-155 14-129 (174)
150 PRK15467 ethanolamine utilizat 99.3 2.3E-11 5E-16 118.8 11.3 98 10-155 3-104 (158)
151 smart00175 RAB Rab subfamily o 99.3 1.6E-11 3.6E-16 119.7 10.3 114 9-155 1-118 (164)
152 cd04157 Arl6 Arl6 subfamily. 99.3 3.3E-11 7.3E-16 117.4 12.1 110 10-155 1-117 (162)
153 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 4E-11 8.6E-16 120.1 12.6 116 7-155 2-122 (183)
154 cd00879 Sar1 Sar1 subfamily. 99.3 2.2E-11 4.8E-16 122.4 10.7 112 6-155 17-133 (190)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.3 2.8E-11 6E-16 136.8 12.1 114 7-155 202-323 (442)
156 cd01862 Rab7 Rab7 subfamily. 99.2 3.3E-11 7.1E-16 118.7 11.0 112 9-155 1-122 (172)
157 cd04163 Era Era subfamily. Er 99.2 9.4E-11 2E-15 113.9 14.0 114 8-155 3-124 (168)
158 smart00178 SAR Sar1p-like memb 99.2 4.4E-11 9.6E-16 119.9 11.9 111 7-155 16-131 (184)
159 cd01893 Miro1 Miro1 subfamily. 99.2 1.4E-10 3E-15 114.1 14.5 112 9-155 1-116 (166)
160 PRK09518 bifunctional cytidyla 99.2 3.7E-11 8E-16 144.4 12.5 113 9-155 276-396 (712)
161 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 6.1E-11 1.3E-15 116.5 11.5 108 11-155 2-112 (164)
162 cd04122 Rab14 Rab14 subfamily. 99.2 1.5E-10 3.2E-15 113.8 14.2 115 8-155 2-120 (166)
163 cd01861 Rab6 Rab6 subfamily. 99.2 4.3E-11 9.2E-16 116.6 10.3 113 10-155 2-118 (161)
164 PF01926 MMR_HSR1: 50S ribosom 99.2 7.1E-11 1.5E-15 108.9 11.2 107 10-151 1-116 (116)
165 cd01882 BMS1 Bms1. Bms1 is an 99.2 9.2E-11 2E-15 121.4 13.1 108 7-155 38-146 (225)
166 cd01867 Rab8_Rab10_Rab13_like 99.2 5.9E-11 1.3E-15 116.8 11.0 115 8-155 3-121 (167)
167 cd00877 Ran Ran (Ras-related n 99.2 3.9E-11 8.6E-16 118.1 9.6 114 9-155 1-117 (166)
168 smart00173 RAS Ras subfamily o 99.2 7.9E-11 1.7E-15 115.2 11.5 112 9-155 1-118 (164)
169 cd04123 Rab21 Rab21 subfamily. 99.2 1.4E-10 2.9E-15 112.8 13.1 114 9-155 1-118 (162)
170 cd04159 Arl10_like Arl10-like 99.2 7.9E-11 1.7E-15 113.6 11.3 108 11-155 2-114 (159)
171 PRK05291 trmE tRNA modificatio 99.2 4.5E-11 9.8E-16 135.8 11.1 113 7-155 214-334 (449)
172 cd01860 Rab5_related Rab5-rela 99.2 4.8E-11 1E-15 116.5 9.6 115 8-155 1-119 (163)
173 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 8.3E-11 1.8E-15 115.4 11.1 115 8-155 2-120 (166)
174 cd00880 Era_like Era (E. coli 99.2 8.8E-11 1.9E-15 112.8 11.1 109 17-155 2-117 (163)
175 cd04116 Rab9 Rab9 subfamily. 99.2 1.8E-10 3.8E-15 113.6 13.2 114 7-155 4-127 (170)
176 cd00154 Rab Rab family. Rab G 99.2 1E-10 2.2E-15 112.6 11.1 114 9-155 1-118 (159)
177 cd01863 Rab18 Rab18 subfamily. 99.2 5.1E-11 1.1E-15 116.2 8.8 114 9-155 1-119 (161)
178 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 1.7E-10 3.7E-15 117.3 12.9 113 9-155 1-123 (201)
179 cd04138 H_N_K_Ras_like H-Ras/N 99.2 1.8E-10 3.8E-15 112.0 12.3 112 9-155 2-119 (162)
180 cd04175 Rap1 Rap1 subgroup. T 99.2 1.6E-10 3.5E-15 113.1 12.1 112 9-155 2-119 (164)
181 smart00176 RAN Ran (Ras-relate 99.2 8.3E-11 1.8E-15 119.3 10.3 109 17-155 1-112 (200)
182 cd04119 RJL RJL (RabJ-Like) su 99.2 9.2E-11 2E-15 114.7 10.3 112 9-155 1-123 (168)
183 PTZ00369 Ras-like protein; Pro 99.2 1.3E-10 2.8E-15 117.0 11.6 114 7-155 4-123 (189)
184 cd04149 Arf6 Arf6 subfamily. 99.2 1.2E-10 2.5E-15 115.1 10.9 111 7-155 8-123 (168)
185 cd04146 RERG_RasL11_like RERG/ 99.2 7.7E-11 1.7E-15 115.6 9.4 112 10-155 1-119 (165)
186 cd04155 Arl3 Arl3 subfamily. 99.2 1.3E-10 2.8E-15 114.8 10.9 112 6-155 12-128 (173)
187 cd04150 Arf1_5_like Arf1-Arf5- 99.2 2.8E-10 6.1E-15 111.2 13.1 109 9-155 1-114 (159)
188 cd04139 RalA_RalB RalA/RalB su 99.2 2.6E-10 5.6E-15 111.2 12.7 112 9-155 1-118 (164)
189 PLN03071 GTP-binding nuclear p 99.2 1.3E-10 2.8E-15 119.9 11.0 117 6-155 11-130 (219)
190 cd04120 Rab12 Rab12 subfamily. 99.2 1.3E-10 2.8E-15 118.1 10.9 111 10-155 2-118 (202)
191 cd01878 HflX HflX subfamily. 99.2 1.5E-10 3.2E-15 117.9 11.3 114 8-155 41-166 (204)
192 cd04140 ARHI_like ARHI subfami 99.2 1.4E-10 3E-15 113.8 10.7 112 9-155 2-121 (165)
193 cd04112 Rab26 Rab26 subfamily. 99.2 1.3E-10 2.9E-15 117.1 10.5 115 9-155 1-119 (191)
194 PLN03118 Rab family protein; P 99.2 1.8E-10 4E-15 118.0 11.7 114 8-155 14-133 (211)
195 smart00177 ARF ARF-like small 99.2 3E-10 6.6E-15 112.8 12.8 111 7-155 12-127 (175)
196 cd04147 Ras_dva Ras-dva subfam 99.2 1.2E-10 2.6E-15 118.2 10.0 111 10-155 1-117 (198)
197 cd04158 ARD1 ARD1 subfamily. 99.2 2.4E-10 5.2E-15 112.8 11.8 108 10-155 1-113 (169)
198 PLN00223 ADP-ribosylation fact 99.2 3.6E-10 7.8E-15 113.0 13.1 111 7-155 16-131 (181)
199 cd01897 NOG NOG1 is a nucleola 99.2 2E-10 4.4E-15 112.7 11.1 111 10-155 2-126 (168)
200 PRK04213 GTP-binding protein; 99.1 2.1E-10 4.6E-15 116.4 11.5 110 7-155 8-143 (201)
201 TIGR02528 EutP ethanolamine ut 99.1 1.5E-10 3.3E-15 110.5 9.4 96 10-155 2-101 (142)
202 KOG0084 GTPase Rab1/YPT1, smal 99.1 2.5E-10 5.5E-15 110.7 10.8 117 6-155 7-127 (205)
203 cd01865 Rab3 Rab3 subfamily. 99.1 1.9E-10 4E-15 113.0 10.2 112 9-155 2-119 (165)
204 COG0218 Predicted GTPase [Gene 99.1 4.7E-10 1E-14 110.5 12.8 112 8-155 24-148 (200)
205 cd04110 Rab35 Rab35 subfamily. 99.1 2.5E-10 5.5E-15 115.9 11.1 114 7-155 5-123 (199)
206 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 2.2E-10 4.7E-15 113.6 10.3 113 8-155 2-120 (172)
207 cd04156 ARLTS1 ARLTS1 subfamil 99.1 2E-10 4.4E-15 111.8 9.9 109 10-155 1-114 (160)
208 cd04101 RabL4 RabL4 (Rab-like4 99.1 3.1E-10 6.7E-15 110.9 11.1 117 9-155 1-120 (164)
209 cd01868 Rab11_like Rab11-like. 99.1 2.5E-10 5.4E-15 111.8 10.4 115 8-155 3-121 (165)
210 cd04136 Rap_like Rap-like subf 99.1 2.5E-10 5.4E-15 111.3 10.3 112 9-155 2-119 (163)
211 cd04142 RRP22 RRP22 subfamily. 99.1 2.1E-10 4.5E-15 116.4 10.0 114 9-155 1-129 (198)
212 cd04177 RSR1 RSR1 subgroup. R 99.1 2.9E-10 6.2E-15 112.0 10.7 112 9-155 2-119 (168)
213 cd04137 RheB Rheb (Ras Homolog 99.1 3.5E-10 7.7E-15 112.5 11.4 113 9-155 2-119 (180)
214 COG0486 ThdF Predicted GTPase 99.1 2.6E-10 5.6E-15 125.0 11.1 114 7-155 216-337 (454)
215 KOG0052 Translation elongation 99.1 1.7E-11 3.7E-16 131.0 1.3 128 6-155 5-155 (391)
216 cd04127 Rab27A Rab27a subfamil 99.1 3.9E-10 8.4E-15 112.2 10.9 124 7-155 3-133 (180)
217 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 3.8E-10 8.2E-15 111.6 10.7 113 10-155 2-119 (170)
218 cd04176 Rap2 Rap2 subgroup. T 99.1 5.6E-10 1.2E-14 109.1 11.9 112 9-155 2-119 (163)
219 cd04144 Ras2 Ras2 subfamily. 99.1 4.7E-10 1E-14 113.0 11.5 111 10-155 1-119 (190)
220 TIGR03156 GTP_HflX GTP-binding 99.1 2.9E-10 6.2E-15 125.0 10.8 113 8-155 189-314 (351)
221 PTZ00133 ADP-ribosylation fact 99.1 5.1E-10 1.1E-14 112.0 11.6 111 7-155 16-131 (182)
222 PLN03110 Rab GTPase; Provision 99.1 5.6E-10 1.2E-14 114.9 11.6 116 7-155 11-130 (216)
223 PRK00454 engB GTP-binding prot 99.1 1.1E-09 2.3E-14 110.6 13.4 113 7-155 23-148 (196)
224 cd04126 Rab20 Rab20 subfamily. 99.1 6.4E-10 1.4E-14 114.4 11.6 109 9-155 1-113 (220)
225 cd00882 Ras_like_GTPase Ras-li 99.1 3.6E-10 7.8E-15 107.1 9.1 109 17-155 2-115 (157)
226 cd00876 Ras Ras family. The R 99.1 4.3E-10 9.2E-15 109.0 9.7 112 10-155 1-117 (160)
227 cd04135 Tc10 TC10 subfamily. 99.1 2.3E-10 5E-15 113.1 7.9 112 9-155 1-117 (174)
228 cd01881 Obg_like The Obg-like 99.1 4.7E-10 1E-14 110.8 9.9 108 17-155 2-133 (176)
229 cd01874 Cdc42 Cdc42 subfamily. 99.1 5.2E-10 1.1E-14 111.2 10.2 113 8-155 1-118 (175)
230 cd04118 Rab24 Rab24 subfamily. 99.1 5.5E-10 1.2E-14 112.6 10.3 115 9-155 1-118 (193)
231 cd04121 Rab40 Rab40 subfamily. 99.1 7.7E-10 1.7E-14 111.3 11.3 116 7-155 5-123 (189)
232 cd04132 Rho4_like Rho4-like su 99.1 1E-09 2.2E-14 110.0 12.0 113 9-155 1-118 (187)
233 cd04109 Rab28 Rab28 subfamily. 99.1 5.3E-10 1.1E-14 115.0 10.2 113 9-155 1-122 (215)
234 PF09439 SRPRB: Signal recogni 99.1 1.1E-09 2.4E-14 107.8 11.7 129 9-178 4-145 (181)
235 PRK12298 obgE GTPase CgtA; Rev 99.0 1.6E-09 3.5E-14 120.5 13.9 112 10-155 161-288 (390)
236 PLN03108 Rab family protein; P 99.0 1.5E-09 3.2E-14 111.2 12.6 114 7-155 5-124 (210)
237 cd04128 Spg1 Spg1p. Spg1p (se 99.0 1.9E-09 4.1E-14 107.9 12.8 114 9-155 1-117 (182)
238 PRK12299 obgE GTPase CgtA; Rev 99.0 3.1E-09 6.7E-14 116.0 15.5 112 10-155 160-284 (335)
239 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 1.4E-09 3E-14 110.2 11.8 113 9-155 1-129 (196)
240 cd00157 Rho Rho (Ras homology) 99.0 4.8E-10 1E-14 110.2 8.0 113 9-155 1-117 (171)
241 cd04131 Rnd Rnd subfamily. Th 99.0 2E-09 4.4E-14 107.3 12.0 112 9-155 2-118 (178)
242 cd01875 RhoG RhoG subfamily. 99.0 1.4E-09 3.1E-14 109.6 11.0 114 8-155 3-120 (191)
243 cd01892 Miro2 Miro2 subfamily. 99.0 1.9E-09 4.2E-14 106.4 11.6 115 6-155 2-121 (169)
244 cd04133 Rop_like Rop subfamily 99.0 1.1E-09 2.4E-14 108.8 10.0 113 9-155 2-118 (176)
245 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 3E-09 6.4E-14 106.4 12.6 115 7-155 4-122 (182)
246 PTZ00132 GTP-binding nuclear p 99.0 1.9E-09 4.1E-14 110.8 11.4 117 6-155 7-126 (215)
247 PRK11058 GTPase HflX; Provisio 99.0 1.3E-09 2.9E-14 122.5 11.1 112 9-155 198-322 (426)
248 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 1.9E-09 4E-14 111.1 11.3 112 9-155 2-118 (222)
249 cd01850 CDC_Septin CDC/Septin. 99.0 4.4E-09 9.5E-14 112.0 14.3 124 8-155 4-156 (276)
250 cd01871 Rac1_like Rac1-like su 99.0 2.1E-09 4.6E-14 106.7 11.1 112 9-155 2-118 (174)
251 cd04125 RabA_like RabA-like su 99.0 1.3E-09 2.9E-14 109.4 9.8 112 9-155 1-118 (188)
252 cd04111 Rab39 Rab39 subfamily. 99.0 2E-09 4.3E-14 110.4 11.0 114 8-155 2-122 (211)
253 cd04143 Rhes_like Rhes_like su 99.0 1.5E-09 3.3E-14 113.8 10.4 112 9-155 1-126 (247)
254 KOG0095 GTPase Rab30, small G 99.0 5.8E-09 1.3E-13 95.9 12.7 121 1-155 1-125 (213)
255 cd04102 RabL3 RabL3 (Rab-like3 99.0 2.2E-09 4.7E-14 109.0 11.1 117 9-155 1-142 (202)
256 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 5.5E-09 1.2E-13 108.2 13.7 115 7-155 12-130 (232)
257 PF08477 Miro: Miro-like prote 99.0 7.1E-10 1.5E-14 102.4 6.3 113 10-153 1-119 (119)
258 KOG0080 GTPase Rab18, small G 99.0 8.8E-10 1.9E-14 102.7 6.7 117 6-155 9-130 (209)
259 PF00025 Arf: ADP-ribosylation 99.0 2.9E-09 6.2E-14 105.9 10.9 112 6-155 12-128 (175)
260 KOG0394 Ras-related GTPase [Ge 99.0 1.6E-09 3.4E-14 103.8 8.4 122 1-155 1-131 (210)
261 cd04130 Wrch_1 Wrch-1 subfamil 99.0 1.7E-09 3.8E-14 107.0 9.1 112 9-155 1-117 (173)
262 smart00174 RHO Rho (Ras homolo 99.0 4.4E-09 9.6E-14 103.9 11.5 68 88-155 44-115 (174)
263 cd04117 Rab15 Rab15 subfamily. 99.0 5.2E-09 1.1E-13 102.3 11.8 114 9-155 1-118 (161)
264 KOG0092 GTPase Rab5/YPT51 and 99.0 2.2E-09 4.8E-14 103.9 8.7 116 7-155 4-123 (200)
265 TIGR00437 feoB ferrous iron tr 98.9 2.5E-09 5.5E-14 125.3 10.0 104 18-155 1-112 (591)
266 TIGR02729 Obg_CgtA Obg family 98.9 1E-08 2.2E-13 111.9 13.9 112 10-155 159-286 (329)
267 cd04134 Rho3 Rho3 subfamily. 98.9 3.3E-09 7E-14 106.8 9.3 112 10-155 2-117 (189)
268 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.9 8.5E-09 1.8E-13 99.8 11.2 117 6-155 20-141 (221)
269 cd01870 RhoA_like RhoA-like su 98.9 3.5E-09 7.7E-14 104.7 8.4 112 9-155 2-118 (175)
270 PLN00023 GTP-binding protein; 98.9 6E-09 1.3E-13 111.3 10.5 127 7-155 20-164 (334)
271 cd01876 YihA_EngB The YihA (En 98.9 1.8E-08 3.9E-13 98.1 13.2 109 11-155 2-123 (170)
272 KOG0098 GTPase Rab2, small G p 98.9 7.9E-09 1.7E-13 99.2 9.8 116 7-155 5-124 (216)
273 PRK12296 obgE GTPase CgtA; Rev 98.9 1.5E-08 3.1E-13 115.0 13.7 112 9-155 160-297 (500)
274 cd04104 p47_IIGP_like p47 (47- 98.9 9.8E-09 2.1E-13 104.1 10.9 114 9-155 2-120 (197)
275 cd04148 RGK RGK subfamily. Th 98.9 9.3E-09 2E-13 106.2 10.5 111 9-155 1-119 (221)
276 PRK12297 obgE GTPase CgtA; Rev 98.9 1.9E-08 4.1E-13 112.7 13.6 112 10-155 160-287 (424)
277 PF10662 PduV-EutP: Ethanolami 98.9 9.2E-09 2E-13 97.1 9.0 60 93-155 39-102 (143)
278 KOG1423 Ras-like GTPase ERA [C 98.8 1.1E-08 2.3E-13 105.6 9.3 116 6-155 70-198 (379)
279 COG1084 Predicted GTPase [Gene 98.8 3.5E-08 7.6E-13 103.5 13.2 112 7-155 167-293 (346)
280 COG3596 Predicted GTPase [Gene 98.8 4.3E-08 9.4E-13 100.5 12.9 159 6-212 37-210 (296)
281 PF00071 Ras: Ras family; Int 98.8 4.5E-08 9.7E-13 95.4 12.3 113 10-155 1-117 (162)
282 COG1100 GTPase SAR1 and relate 98.8 3.7E-08 8E-13 101.3 10.6 115 8-155 5-124 (219)
283 KOG0078 GTP-binding protein SE 98.8 2.5E-08 5.4E-13 98.4 8.7 116 7-155 11-130 (207)
284 cd01873 RhoBTB RhoBTB subfamil 98.7 5.8E-08 1.3E-12 98.2 10.2 68 86-155 62-133 (195)
285 KOG1191 Mitochondrial GTPase [ 98.7 4.5E-08 9.8E-13 107.2 9.8 112 7-152 267-387 (531)
286 PRK09866 hypothetical protein; 98.7 1.5E-07 3.3E-12 107.2 14.1 67 89-155 229-302 (741)
287 KOG0075 GTP-binding ADP-ribosy 98.7 2.7E-08 5.8E-13 91.7 6.0 111 8-155 20-135 (186)
288 KOG0088 GTPase Rab21, small G 98.7 1.6E-08 3.5E-13 94.0 4.6 115 8-155 13-131 (218)
289 KOG0070 GTP-binding ADP-ribosy 98.7 4.8E-08 1E-12 94.4 8.0 112 6-155 15-131 (181)
290 cd04129 Rho2 Rho2 subfamily. 98.7 7.1E-08 1.5E-12 96.9 9.4 112 9-155 2-118 (187)
291 KOG0073 GTP-binding ADP-ribosy 98.7 2E-07 4.3E-12 87.8 11.2 111 7-155 15-130 (185)
292 KOG0087 GTPase Rab11/YPT3, sma 98.7 4.7E-08 1E-12 96.1 7.2 116 7-155 13-132 (222)
293 cd01853 Toc34_like Toc34-like 98.6 4.5E-07 9.7E-12 95.0 14.6 115 7-155 30-162 (249)
294 cd04103 Centaurin_gamma Centau 98.6 8.3E-08 1.8E-12 93.7 8.1 107 9-155 1-112 (158)
295 KOG0086 GTPase Rab4, small G p 98.6 1.5E-07 3.2E-12 87.2 9.0 114 9-155 10-127 (214)
296 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 3.5E-07 7.5E-12 94.3 12.7 134 10-182 1-145 (232)
297 smart00053 DYNc Dynamin, GTPas 98.6 4.6E-07 1E-11 93.9 13.5 67 89-155 124-205 (240)
298 PF03144 GTP_EFTU_D2: Elongati 98.6 3.4E-08 7.4E-13 83.3 4.0 71 385-460 3-74 (74)
299 KOG0090 Signal recognition par 98.6 2.3E-07 4.9E-12 91.4 9.3 126 10-177 40-177 (238)
300 COG0370 FeoB Fe2+ transport sy 98.5 3.3E-07 7.1E-12 105.1 10.8 109 9-155 4-121 (653)
301 cd01896 DRG The developmentall 98.5 8.7E-07 1.9E-11 92.3 13.2 98 10-143 2-106 (233)
302 KOG0079 GTP-binding protein H- 98.5 3.9E-07 8.5E-12 84.1 8.1 112 9-155 9-125 (198)
303 TIGR00991 3a0901s02IAP34 GTP-b 98.5 1.6E-06 3.5E-11 92.3 13.1 116 6-155 36-166 (313)
304 COG5192 BMS1 GTP-binding prote 98.4 5E-07 1.1E-11 99.3 7.8 108 7-155 68-176 (1077)
305 KOG0071 GTP-binding ADP-ribosy 98.4 1.4E-06 3.1E-11 79.9 9.2 113 5-155 14-131 (180)
306 COG2262 HflX GTPases [General 98.4 1.2E-06 2.7E-11 94.8 10.2 113 8-155 192-317 (411)
307 KOG0395 Ras-related GTPase [Ge 98.4 1.1E-06 2.4E-11 88.7 9.3 115 7-155 2-121 (196)
308 TIGR02836 spore_IV_A stage IV 98.4 4.8E-06 1E-10 90.7 13.7 131 8-154 17-192 (492)
309 KOG1532 GTPase XAB1, interacts 98.4 4.4E-07 9.5E-12 92.4 5.4 88 89-176 115-215 (366)
310 KOG0074 GTP-binding ADP-ribosy 98.3 2.1E-06 4.5E-11 78.9 8.6 114 5-155 14-132 (185)
311 COG1163 DRG Predicted GTPase [ 98.3 3.5E-06 7.6E-11 88.3 11.1 84 9-127 64-154 (365)
312 PRK13768 GTPase; Provisional 98.3 1.5E-06 3.2E-11 91.7 8.4 67 89-155 96-175 (253)
313 KOG0093 GTPase Rab3, small G p 98.3 3.2E-06 6.9E-11 78.2 8.9 114 9-155 22-139 (193)
314 PF00350 Dynamin_N: Dynamin fa 98.3 9.6E-07 2.1E-11 86.8 6.1 64 89-152 100-168 (168)
315 KOG4252 GTP-binding protein [S 98.3 8.6E-07 1.9E-11 84.4 5.2 116 7-155 19-137 (246)
316 PF05049 IIGP: Interferon-indu 98.3 3E-06 6.6E-11 92.6 9.8 119 5-156 32-155 (376)
317 PF03029 ATP_bind_1: Conserved 98.3 3.9E-07 8.4E-12 94.9 2.4 65 91-155 92-169 (238)
318 PF04548 AIG1: AIG1 family; I 98.2 1.8E-05 3.9E-10 81.2 13.9 113 9-155 1-129 (212)
319 PRK09435 membrane ATPase/prote 98.2 5.1E-06 1.1E-10 90.2 9.1 62 85-155 144-207 (332)
320 cd01342 Translation_Factor_II_ 98.1 1.1E-05 2.4E-10 68.3 8.8 71 369-451 2-72 (83)
321 PTZ00099 rab6; Provisional 98.1 5.2E-06 1.1E-10 82.5 7.7 69 87-155 26-98 (176)
322 KOG0077 Vesicle coat complex C 98.1 1.2E-05 2.7E-10 76.1 9.2 116 7-164 19-139 (193)
323 PF00735 Septin: Septin; Inte 98.1 2.7E-05 5.8E-10 83.1 13.0 132 7-168 3-162 (281)
324 KOG1489 Predicted GTP-binding 98.1 2.3E-05 4.9E-10 82.0 11.1 108 10-155 198-325 (366)
325 KOG0076 GTP-binding ADP-ribosy 98.1 6.3E-06 1.4E-10 78.7 6.3 118 7-155 16-139 (197)
326 KOG0096 GTPase Ran/TC4/GSP1 (n 98.0 1.1E-05 2.4E-10 78.2 7.1 116 7-155 9-127 (216)
327 PRK14722 flhF flagellar biosyn 98.0 1.7E-05 3.6E-10 87.4 9.0 68 88-155 214-294 (374)
328 TIGR00993 3a0901s04IAP86 chlor 97.9 0.0001 2.2E-09 85.0 13.8 114 8-155 118-249 (763)
329 KOG0097 GTPase Rab14, small G 97.9 5.4E-05 1.2E-09 69.3 8.4 114 9-155 12-129 (215)
330 TIGR00073 hypB hydrogenase acc 97.9 7.4E-05 1.6E-09 76.4 10.4 134 8-155 22-161 (207)
331 cd03698 eRF3_II_like eRF3_II_l 97.9 0.00012 2.5E-09 63.3 10.0 69 367-450 1-71 (83)
332 COG4917 EutP Ethanolamine util 97.9 4.6E-05 1E-09 69.0 7.5 97 10-155 3-103 (148)
333 KOG2486 Predicted GTPase [Gene 97.8 4.3E-05 9.3E-10 78.6 7.8 113 8-155 136-261 (320)
334 cd03110 Fer4_NifH_child This p 97.8 0.00016 3.4E-09 72.0 11.7 66 88-155 91-156 (179)
335 cd03693 EF1_alpha_II EF1_alpha 97.8 0.00014 3E-09 64.0 9.8 84 365-462 2-88 (91)
336 cd03115 SRP The signal recogni 97.8 0.00011 2.3E-09 72.8 9.3 66 88-155 81-152 (173)
337 PTZ00258 GTP-binding protein; 97.7 8.1E-05 1.8E-09 82.5 8.8 98 8-124 21-126 (390)
338 KOG0083 GTPase Rab26/Rab37, sm 97.7 1.2E-05 2.6E-10 73.0 1.5 70 86-155 43-116 (192)
339 KOG3883 Ras family small GTPas 97.7 0.00032 7E-09 65.6 10.6 118 6-155 7-131 (198)
340 cd03114 ArgK-like The function 97.7 6.7E-05 1.4E-09 72.4 6.5 59 88-153 90-148 (148)
341 KOG1954 Endocytosis/signaling 97.7 0.0004 8.7E-09 73.9 12.5 66 90-155 147-224 (532)
342 COG0536 Obg Predicted GTPase [ 97.7 0.00042 9.1E-09 73.7 12.5 106 14-155 163-288 (369)
343 KOG0091 GTPase Rab39, small G 97.7 0.00027 5.9E-09 66.8 9.9 113 8-155 8-129 (213)
344 TIGR00750 lao LAO/AO transport 97.7 7.3E-05 1.6E-09 80.9 6.8 63 86-155 123-185 (300)
345 cd01900 YchF YchF subfamily. 97.7 8.3E-05 1.8E-09 78.8 6.9 90 17-124 4-103 (274)
346 cd02036 MinD Bacterial cell di 97.6 0.00034 7.5E-09 69.2 10.8 63 91-155 64-127 (179)
347 PRK09601 GTP-binding protein Y 97.6 0.00015 3.2E-09 79.5 8.7 95 9-124 3-107 (364)
348 COG5019 CDC3 Septin family pro 97.6 0.00072 1.6E-08 72.7 13.1 124 8-155 23-175 (373)
349 TIGR01425 SRP54_euk signal rec 97.6 0.00028 6E-09 79.1 10.2 65 88-155 181-252 (429)
350 cd03112 CobW_like The function 97.6 0.00026 5.7E-09 69.0 8.8 63 89-154 86-158 (158)
351 KOG3886 GTP-binding protein [S 97.5 0.00027 5.8E-09 70.8 7.8 119 9-164 5-134 (295)
352 TIGR00101 ureG urease accessor 97.5 0.00035 7.7E-09 70.8 8.8 58 89-155 91-150 (199)
353 cd01899 Ygr210 Ygr210 subfamil 97.5 0.00025 5.4E-09 77.0 7.7 38 88-125 67-111 (318)
354 TIGR00064 ftsY signal recognit 97.5 0.00051 1.1E-08 73.1 9.8 65 88-155 153-230 (272)
355 KOG2655 Septin family protein 97.4 0.0011 2.5E-08 71.8 11.9 123 8-155 21-171 (366)
356 PF00448 SRP54: SRP54-type pro 97.4 0.00026 5.5E-09 71.6 6.4 66 88-155 82-153 (196)
357 PRK11889 flhF flagellar biosyn 97.4 0.00049 1.1E-08 75.5 8.9 63 89-155 320-390 (436)
358 cd02038 FleN-like FleN is a me 97.4 0.0012 2.7E-08 62.8 10.7 79 90-175 45-125 (139)
359 PRK00771 signal recognition pa 97.4 0.00047 1E-08 77.8 9.0 61 90-155 176-245 (437)
360 PRK09602 translation-associate 97.4 0.00039 8.5E-09 77.8 8.2 37 89-125 71-114 (396)
361 cd04089 eRF3_II eRF3_II: domai 97.4 0.0014 3.1E-08 56.3 9.9 65 367-447 1-65 (82)
362 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00016 3.5E-09 70.3 4.5 25 8-35 102-126 (157)
363 PRK10416 signal recognition pa 97.4 0.00053 1.2E-08 74.5 8.9 65 88-155 195-272 (318)
364 PF03193 DUF258: Protein of un 97.4 0.00015 3.4E-09 70.2 3.8 18 17-34 41-58 (161)
365 PRK14974 cell division protein 97.3 0.00063 1.4E-08 74.3 8.9 63 88-155 221-292 (336)
366 KOG0072 GTP-binding ADP-ribosy 97.3 0.00024 5.2E-09 65.9 4.5 110 8-155 18-132 (182)
367 TIGR00959 ffh signal recogniti 97.3 0.00054 1.2E-08 77.2 8.3 66 87-155 180-252 (428)
368 KOG1707 Predicted Ras related/ 97.3 0.00063 1.4E-08 76.7 8.6 121 1-156 1-129 (625)
369 PF03308 ArgK: ArgK protein; 97.3 0.00027 5.9E-09 73.0 5.2 74 87-175 119-194 (266)
370 KOG0448 Mitofusin 1 GTPase, in 97.3 0.0015 3.3E-08 74.9 11.1 136 6-155 107-274 (749)
371 cd02037 MRP-like MRP (Multiple 97.3 0.0012 2.6E-08 65.1 9.3 66 88-155 66-134 (169)
372 COG0523 Putative GTPases (G3E 97.3 0.0011 2.5E-08 71.8 9.8 150 17-180 7-176 (323)
373 KOG0393 Ras-related small GTPa 97.2 0.00031 6.7E-09 70.0 4.4 69 87-155 50-122 (198)
374 KOG0081 GTPase Rab27, small G 97.2 0.00022 4.7E-09 67.0 3.1 67 89-155 66-137 (219)
375 PRK10867 signal recognition pa 97.2 0.0011 2.4E-08 74.8 8.6 64 87-155 181-253 (433)
376 cd04178 Nucleostemin_like Nucl 97.1 0.00053 1.1E-08 67.9 4.7 23 8-33 117-139 (172)
377 KOG1673 Ras GTPases [General f 97.1 0.003 6.6E-08 59.4 9.2 116 8-156 20-138 (205)
378 PRK12727 flagellar biosynthesi 97.1 0.0037 8.1E-08 71.3 11.6 65 88-155 427-497 (559)
379 PRK12726 flagellar biosynthesi 97.1 0.0016 3.4E-08 71.5 8.2 64 88-155 284-355 (407)
380 cd03694 GTPBP_II Domain II of 97.0 0.0042 9.2E-08 54.1 9.2 66 372-447 5-70 (87)
381 cd01849 YlqF_related_GTPase Yl 97.0 0.00095 2.1E-08 64.8 5.3 25 8-35 100-124 (155)
382 KOG1490 GTP-binding protein CR 97.0 0.0012 2.7E-08 73.0 6.5 68 87-155 212-294 (620)
383 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.00087 1.9E-08 64.0 4.8 21 10-33 85-105 (141)
384 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0019 4.1E-08 61.6 7.2 51 105-155 3-55 (141)
385 KOG1534 Putative transcription 97.0 0.0014 3E-08 65.0 6.0 137 17-155 9-177 (273)
386 PRK13849 putative crown gall t 97.0 0.0029 6.3E-08 65.7 8.7 64 88-153 82-151 (231)
387 cd03697 EFTU_II EFTU_II: Elong 96.9 0.0043 9.3E-08 54.0 8.3 64 372-447 5-68 (87)
388 COG3640 CooC CO dehydrogenase 96.9 0.0024 5.3E-08 64.7 7.4 68 85-155 129-198 (255)
389 cd03111 CpaE_like This protein 96.9 0.0031 6.8E-08 57.1 7.4 59 91-151 44-106 (106)
390 PRK12724 flagellar biosynthesi 96.9 0.0023 5E-08 71.2 7.7 66 88-155 298-372 (432)
391 KOG1547 Septin CDC10 and relat 96.9 0.0011 2.3E-08 66.9 4.5 123 8-155 46-197 (336)
392 PRK14721 flhF flagellar biosyn 96.9 0.0018 3.8E-08 72.7 6.7 65 88-155 268-339 (420)
393 COG1703 ArgK Putative periplas 96.8 0.0074 1.6E-07 63.5 10.4 76 86-176 140-217 (323)
394 cd01855 YqeH YqeH. YqeH is an 96.8 0.0013 2.8E-08 66.2 4.8 24 9-35 128-151 (190)
395 PRK12288 GTPase RsgA; Reviewed 96.8 0.00082 1.8E-08 74.0 3.5 21 11-34 208-228 (347)
396 COG0378 HypB Ni2+-binding GTPa 96.8 0.0045 9.8E-08 61.2 8.2 53 90-155 97-155 (202)
397 PHA02518 ParA-like protein; Pr 96.8 0.0037 8.1E-08 63.6 7.9 65 88-154 75-145 (211)
398 PRK06731 flhF flagellar biosyn 96.8 0.0058 1.3E-07 64.7 9.3 64 88-155 153-224 (270)
399 COG0541 Ffh Signal recognition 96.7 0.0033 7.2E-08 69.2 7.3 139 8-155 100-252 (451)
400 cd01858 NGP_1 NGP-1. Autoanti 96.7 0.0031 6.8E-08 61.2 6.5 49 107-155 2-52 (157)
401 PRK09563 rbgA GTPase YlqF; Rev 96.7 0.0019 4.1E-08 69.5 5.2 24 7-33 120-143 (287)
402 PRK10463 hydrogenase nickel in 96.7 0.0043 9.3E-08 66.0 7.8 24 8-34 104-127 (290)
403 cd03696 selB_II selB_II: this 96.7 0.0091 2E-07 51.4 8.5 63 371-447 4-66 (83)
404 PF02492 cobW: CobW/HypB/UreG, 96.7 0.0012 2.6E-08 65.7 3.4 82 89-179 84-172 (178)
405 TIGR03596 GTPase_YlqF ribosome 96.7 0.003 6.5E-08 67.6 6.5 24 7-33 117-140 (276)
406 TIGR00157 ribosome small subun 96.7 0.0018 3.9E-08 68.0 4.6 22 10-34 122-143 (245)
407 cd00066 G-alpha G protein alph 96.7 0.004 8.6E-08 68.0 7.3 68 88-155 159-241 (317)
408 cd03695 CysN_NodQ_II CysN_NodQ 96.6 0.012 2.6E-07 50.4 8.5 50 385-447 17-66 (81)
409 cd03688 eIF2_gamma_II eIF2_gam 96.6 0.011 2.4E-07 53.1 8.3 88 365-457 3-102 (113)
410 cd02032 Bchl_like This family 96.6 0.0072 1.6E-07 64.2 8.7 66 88-154 114-184 (267)
411 cd01851 GBP Guanylate-binding 96.6 0.0048 1E-07 63.9 6.8 90 6-124 5-102 (224)
412 COG1162 Predicted GTPases [Gen 96.5 0.0024 5.1E-08 67.8 4.5 17 17-33 170-186 (301)
413 smart00275 G_alpha G protein a 96.5 0.0068 1.5E-07 66.8 8.1 68 88-155 182-264 (342)
414 PRK06995 flhF flagellar biosyn 96.5 0.0057 1.2E-07 69.7 7.6 66 88-155 333-404 (484)
415 cd02042 ParA ParA and ParB of 96.5 0.01 2.2E-07 53.2 7.8 45 90-136 40-84 (104)
416 cd01856 YlqF YlqF. Proteins o 96.5 0.0032 7E-08 62.2 4.8 22 9-33 116-137 (171)
417 PRK05703 flhF flagellar biosyn 96.4 0.0094 2E-07 67.5 8.8 65 89-155 299-370 (424)
418 PRK12289 GTPase RsgA; Reviewed 96.4 0.0023 4.9E-08 70.5 3.7 22 11-35 175-196 (352)
419 cd01859 MJ1464 MJ1464. This f 96.4 0.0045 9.8E-08 60.0 5.3 51 105-155 4-54 (156)
420 COG1161 Predicted GTPases [Gen 96.4 0.0036 7.9E-08 68.3 4.8 58 7-101 131-188 (322)
421 COG1419 FlhF Flagellar GTP-bin 96.4 0.0074 1.6E-07 66.4 7.1 131 8-155 203-351 (407)
422 PRK12723 flagellar biosynthesi 96.3 0.019 4.2E-07 64.0 10.3 66 88-155 253-325 (388)
423 TIGR00257 IMPACT_YIGZ uncharac 96.3 0.03 6.6E-07 56.6 10.8 112 630-747 89-200 (204)
424 KOG0410 Predicted GTP binding 96.3 0.01 2.3E-07 62.6 7.5 111 10-155 180-307 (410)
425 TIGR02475 CobW cobalamin biosy 96.3 0.026 5.6E-07 62.2 10.7 63 89-155 92-186 (341)
426 PRK11568 hypothetical protein; 96.2 0.042 9E-07 55.6 10.8 112 630-747 89-200 (204)
427 cd01854 YjeQ_engC YjeQ/EngC. 96.2 0.0052 1.1E-07 66.1 4.6 22 10-34 163-184 (287)
428 cd01859 MJ1464 MJ1464. This f 96.1 0.0062 1.3E-07 59.0 4.6 22 8-32 101-122 (156)
429 PRK11537 putative GTP-binding 96.1 0.03 6.5E-07 61.0 9.9 133 17-155 10-163 (318)
430 TIGR00092 GTP-binding protein 96.0 0.022 4.7E-07 62.8 8.7 96 9-125 3-109 (368)
431 TIGR03596 GTPase_YlqF ribosome 96.0 0.012 2.7E-07 62.8 6.7 56 98-155 5-61 (276)
432 cd01855 YqeH YqeH. YqeH is an 96.0 0.0096 2.1E-07 59.8 5.2 56 98-155 19-74 (190)
433 PRK14723 flhF flagellar biosyn 95.9 0.02 4.2E-07 68.6 8.3 67 88-155 262-336 (767)
434 TIGR01281 DPOR_bchL light-inde 95.9 0.022 4.7E-07 60.6 8.0 66 88-154 114-184 (268)
435 COG0012 Predicted GTPase, prob 95.9 0.021 4.6E-07 62.1 7.7 96 9-125 3-109 (372)
436 COG0552 FtsY Signal recognitio 95.9 0.018 3.9E-07 61.7 7.0 138 7-154 138-296 (340)
437 TIGR03371 cellulose_yhjQ cellu 95.9 0.068 1.5E-06 55.8 11.4 64 90-155 115-181 (246)
438 PRK13796 GTPase YqeH; Provisio 95.9 0.0087 1.9E-07 66.6 4.8 24 9-35 161-184 (365)
439 KOG1486 GTP-binding protein DR 95.9 0.011 2.5E-07 60.1 5.1 83 9-126 63-152 (364)
440 cd03692 mtIF2_IVc mtIF2_IVc: t 95.8 0.06 1.3E-06 46.5 8.7 64 370-447 6-69 (84)
441 PRK08099 bifunctional DNA-bind 95.8 0.066 1.4E-06 60.2 11.3 28 8-38 219-246 (399)
442 PRK13185 chlL protochlorophyll 95.7 0.038 8.2E-07 58.8 8.9 65 88-153 116-185 (270)
443 CHL00072 chlL photochlorophyll 95.7 0.029 6.2E-07 60.5 7.7 66 88-154 114-184 (290)
444 TIGR03597 GTPase_YqeH ribosome 95.7 0.013 2.8E-07 65.2 5.1 25 9-36 155-179 (360)
445 cd01856 YlqF YlqF. Proteins o 95.6 0.012 2.6E-07 58.1 4.2 57 97-155 2-59 (171)
446 PF07015 VirC1: VirC1 protein; 95.6 0.044 9.6E-07 56.2 8.1 66 87-154 81-152 (231)
447 PRK10818 cell division inhibit 95.5 0.038 8.2E-07 58.8 8.0 66 88-155 112-186 (270)
448 PRK00098 GTPase RsgA; Reviewed 95.5 0.013 2.9E-07 63.3 4.5 21 10-33 166-186 (298)
449 cd04178 Nucleostemin_like Nucl 95.4 0.031 6.7E-07 55.3 6.0 41 115-155 1-43 (172)
450 PRK13695 putative NTPase; Prov 95.3 0.06 1.3E-06 53.2 7.8 38 115-152 96-136 (174)
451 PRK09563 rbgA GTPase YlqF; Rev 95.1 0.031 6.8E-07 60.1 5.8 57 97-155 7-64 (287)
452 TIGR03348 VI_IcmF type VI secr 95.1 0.041 9E-07 70.3 7.8 44 112-155 200-256 (1169)
453 TIGR01007 eps_fam capsular exo 95.1 0.053 1.1E-06 55.1 7.0 67 88-155 126-193 (204)
454 cd01983 Fer4_NifH The Fer4_Nif 95.1 0.12 2.6E-06 44.7 8.5 44 91-134 35-79 (99)
455 cd02117 NifH_like This family 95.0 0.078 1.7E-06 54.2 8.2 66 88-154 115-187 (212)
456 KOG0780 Signal recognition par 95.0 0.078 1.7E-06 57.5 8.2 69 84-155 178-253 (483)
457 cd01849 YlqF_related_GTPase Yl 95.0 0.053 1.1E-06 52.5 6.4 41 115-155 1-42 (155)
458 cd03702 IF2_mtIF2_II This fami 95.0 0.11 2.3E-06 46.0 7.7 67 371-452 4-70 (95)
459 PRK05800 cobU adenosylcobinami 94.9 0.2 4.4E-06 49.4 10.2 139 10-185 3-155 (170)
460 KOG2485 Conserved ATP/GTP bind 94.8 0.037 8E-07 58.5 5.0 64 7-100 142-206 (335)
461 KOG0447 Dynamin-like GTP bindi 94.8 0.32 7E-06 54.7 12.3 100 58-175 393-507 (980)
462 cd02040 NifH NifH gene encodes 94.6 0.11 2.3E-06 55.2 8.1 38 88-125 115-153 (270)
463 KOG2743 Cobalamin synthesis pr 94.6 0.37 7.9E-06 50.8 11.3 83 90-182 146-244 (391)
464 KOG1533 Predicted GTPase [Gene 94.5 0.04 8.8E-07 55.8 4.2 68 88-155 95-176 (290)
465 KOG2423 Nucleolar GTPase [Gene 94.3 0.029 6.3E-07 60.6 2.9 24 5-31 304-327 (572)
466 KOG1491 Predicted GTP-binding 94.1 0.15 3.2E-06 54.6 7.5 99 8-125 20-126 (391)
467 PRK13232 nifH nitrogenase redu 94.0 0.14 3.1E-06 54.5 7.4 66 88-153 115-185 (273)
468 COG3523 IcmF Type VI protein s 94.0 0.11 2.4E-06 64.9 7.3 67 89-155 173-269 (1188)
469 KOG3887 Predicted small GTPase 93.8 0.12 2.5E-06 52.7 5.7 66 90-155 75-148 (347)
470 PRK13230 nitrogenase reductase 93.7 0.26 5.6E-06 52.7 8.8 38 88-125 115-153 (279)
471 COG1618 Predicted nucleotide k 93.6 0.64 1.4E-05 44.9 10.1 24 6-32 3-26 (179)
472 TIGR01287 nifH nitrogenase iro 93.4 0.21 4.6E-06 53.2 7.6 64 88-151 114-183 (275)
473 PF06858 NOG1: Nucleolar GTP-b 93.3 0.25 5.4E-06 39.0 5.7 48 106-153 5-58 (58)
474 TIGR01969 minD_arch cell divis 93.2 0.21 4.5E-06 52.2 7.0 66 88-155 107-173 (251)
475 PRK14493 putative bifunctional 93.1 0.15 3.2E-06 54.4 5.6 20 11-33 4-23 (274)
476 TIGR03597 GTPase_YqeH ribosome 92.9 0.25 5.3E-06 55.0 7.3 54 100-155 50-103 (360)
477 COG0455 flhG Antiactivator of 92.9 0.51 1.1E-05 49.9 9.3 79 90-176 113-195 (262)
478 PF09186 DUF1949: Domain of un 92.6 0.23 5E-06 38.9 4.8 56 685-743 1-56 (56)
479 KOG2484 GTPase [General functi 92.5 0.14 3.1E-06 55.9 4.5 27 7-36 251-277 (435)
480 PRK12289 GTPase RsgA; Reviewed 92.5 0.32 6.9E-06 53.7 7.4 46 110-155 86-133 (352)
481 cd03701 IF2_IF5B_II IF2_IF5B_I 92.4 0.77 1.7E-05 40.6 8.3 71 371-457 4-74 (95)
482 PRK01889 GTPase RsgA; Reviewed 92.3 0.17 3.6E-06 56.2 5.1 23 10-35 197-219 (356)
483 PRK13235 nifH nitrogenase redu 92.3 0.87 1.9E-05 48.5 10.4 65 88-152 116-186 (274)
484 KOG1424 Predicted GTP-binding 92.2 0.11 2.4E-06 58.4 3.2 22 9-33 315-336 (562)
485 PF13555 AAA_29: P-loop contai 92.1 0.15 3.2E-06 41.2 3.1 17 17-33 29-45 (62)
486 KOG4423 GTP-binding protein-li 92.1 0.018 3.9E-07 56.1 -2.5 115 9-155 26-148 (229)
487 TIGR00157 ribosome small subun 92.1 0.24 5.2E-06 52.0 5.6 47 109-155 32-80 (245)
488 KOG0082 G-protein alpha subuni 92.1 0.36 7.8E-06 52.7 7.0 83 57-155 178-275 (354)
489 KOG3022 Predicted ATPase, nucl 92.0 0.64 1.4E-05 48.6 8.3 67 84-150 151-219 (300)
490 TIGR01968 minD_bact septum sit 91.7 0.33 7.1E-06 51.0 6.2 65 89-155 111-176 (261)
491 cd03703 aeIF5B_II aeIF5B_II: T 91.7 0.89 1.9E-05 41.2 7.9 68 377-452 10-86 (110)
492 PRK01889 GTPase RsgA; Reviewed 91.6 0.43 9.3E-06 53.0 7.1 45 111-155 110-155 (356)
493 COG1149 MinD superfamily P-loo 91.5 0.45 9.7E-06 49.7 6.5 64 90-155 164-227 (284)
494 PRK00098 GTPase RsgA; Reviewed 91.3 0.42 9.2E-06 51.7 6.6 46 110-155 77-124 (298)
495 PF13207 AAA_17: AAA domain; P 91.2 0.18 4E-06 46.1 3.2 23 11-36 2-24 (121)
496 cd02034 CooC The accessory pro 91.1 0.27 5.9E-06 45.2 4.2 20 11-33 2-21 (116)
497 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.0 2.2 4.7E-05 40.8 10.5 19 10-31 28-46 (144)
498 CHL00175 minD septum-site dete 91.0 0.43 9.3E-06 51.0 6.3 65 89-155 126-191 (281)
499 COG0563 Adk Adenylate kinase a 90.8 0.21 4.6E-06 49.6 3.4 27 10-39 2-28 (178)
500 KOG2484 GTPase [General functi 90.7 0.6 1.3E-05 51.2 6.9 64 92-155 124-190 (435)
No 1
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-165 Score=1294.01 Aligned_cols=780 Identities=66% Similarity=1.072 Sum_probs=754.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.|..+ ++|+|||||||+++|...+|+|+...+|++|++|++.+||+|||||+++.+++.|..+..-++.+....+++
T Consensus 20 RNmSV---IAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 20 RNMSV---IAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred ccceE---EEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 46667 999999999999999999999997779999999999999999999999999999987777777777777888
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHH
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~~ 168 (794)
++.|||||+|||+||++|+..|||+.|||++|||+++|++.||+++++|+..+++++++|+|||||.++||+++++++|+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLyq 176 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELYQ 176 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCCCc
Q 003804 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~~~ 248 (794)
.|+++++.+|.+++.|.+.++|++.+.|.+++|.|+|+++||+|++.+||+.|.++|++|..+|..+|||++|+++++++
T Consensus 177 tf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk 256 (842)
T KOG0469|consen 177 TFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTKK 256 (842)
T ss_pred HHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecC--CCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHH
Q 003804 249 WTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (794)
Q Consensus 249 ~~~~~--~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (794)
|..+. ..++.+++.|+.++|+|||++++++.+...+.+..+|+.+++.+..++....+++|++.+|++|+|...+||+
T Consensus 257 ~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadalle 336 (842)
T KOG0469|consen 257 WSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALLE 336 (842)
T ss_pred ccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHHH
Confidence 98765 3567889999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCC
Q 003804 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (794)
Q Consensus 327 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 406 (794)
+|.-+||||..+|.+|...+|.|+.+|+.+-++++||+++|+.+||+|+.+++++|+|++|+|||||++.+|+.+++.||
T Consensus 337 mIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqgP 416 (842)
T KOG0469|consen 337 MIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQGP 416 (842)
T ss_pred HHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCCcccccccccCCCceEEEEEE
Q 003804 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQ 486 (794)
Q Consensus 407 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~aIe 486 (794)
||.+|++++.+...|.+..+|||+..++|+.++||+|+++.|+++++.+|||+++.+. ++.++.|+|+.+||+.++||
T Consensus 417 nY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~--AHNmrvMKFSVSPVV~VAVe 494 (842)
T KOG0469|consen 417 NYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEA--AHNMRVMKFSVSPVVRVAVE 494 (842)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhh--hccceEEEeeccceEEEEEe
Confidence 9999999888878888999999999999999999999999999999999999999887 88999999999999999999
Q ss_pred eCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeecccccce
Q 003804 487 CKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR 566 (794)
Q Consensus 487 p~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi~~~~~~ 566 (794)
++++.|++||.++|++|+++||...+..+|+||++|.|.||||||||+.+|++.| |+++++.|+|.|+||||+.+.++.
T Consensus 495 ~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedh-A~iPlk~sdPvVsYrEtvs~~ss~ 573 (842)
T KOG0469|consen 495 AKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDH-ACIPLKKSDPVVSYRETVSEESSQ 573 (842)
T ss_pred cCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcc-cCCceecCCCeeeeecccccccch
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred eEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCcc----------------------------------------
Q 003804 567 TVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---------------------------------------- 606 (794)
Q Consensus 567 ~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~---------------------------------------- 606 (794)
.+.++++|+|+++++.++|++.++.+.|++|.+.+.|+.|
T Consensus 574 ~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nll~D~TK~v 653 (842)
T KOG0469|consen 574 TCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNLLVDQTKGV 653 (842)
T ss_pred hhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCcEEEecchhh
Confidence 9999999999999999999999999999999886655332
Q ss_pred -chHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEE
Q 003804 607 -YLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEI 685 (794)
Q Consensus 607 -~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI 685 (794)
|+++|++++..|||||.++|||+|+.|++|+|.|.|...|.|..|++.+|+++.+|++|+++++.|+|+|+||+|.|||
T Consensus 654 qylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~EPvylvEI 733 (842)
T KOG0469|consen 654 QYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQEPVYLVEI 733 (842)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceecCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCCh
Q 003804 686 QAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGS 765 (794)
Q Consensus 686 ~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~ 765 (794)
+||++++|.|++.|+++||++.+++...|++++.|+|++|+.|+|||..+|||.|+|+|..+|.|+||+++|+||+|++|
T Consensus 734 q~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~lpgdp~dp~s 813 (842)
T KOG0469|consen 734 QCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSILPGDPLDPTS 813 (842)
T ss_pred eCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeeccccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003804 766 QASQLVLDIRKRKGLKEQMTPLSEYEDKL 794 (794)
Q Consensus 766 ~~~~~~~~~r~rkGl~~~~~~~~~~~~~l 794 (794)
..-+++.++|+||||.|.+|.+.+|+|||
T Consensus 814 k~~~iV~~~RKrkglke~~P~~~~y~Dkl 842 (842)
T KOG0469|consen 814 KPGQIVLATRKRKGLKEGVPDLDEYLDKL 842 (842)
T ss_pred cchHHHHHHHHhcCCCCCCCChHHHhhcC
Confidence 99999999999999999999999999997
No 2
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=5.1e-147 Score=1323.70 Aligned_cols=784 Identities=92% Similarity=1.400 Sum_probs=702.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
...|||| +||+|||||||+++||+.+|.+++...|.++++|++++|++||+|++++.+++.|......+++.....+
T Consensus 18 ~Irni~i---iGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 18 NIRNMSV---IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccEEEE---EcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 4579999 9999999999999999999999887778788999999999999999999999999521111111111234
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
.++++|||||||||.||..++.+|++.+|+||+||||.+|++.||+++|+++...++|+|+|+||||++++||+.+++++
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~ 174 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~ 246 (794)
|..++++++++|.++..|..+..++++|+|..+||.|+|+++||+|++++|+..|..+|+++...+.+++||++||++++
T Consensus 175 ~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~ 254 (843)
T PLN00116 175 YQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
T ss_pred HHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCC
Confidence 99999999999988888775555677899999999999999999999999999999999999999999999999999887
Q ss_pred CceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHH
Q 003804 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (794)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (794)
+++...+.+.....+.|.+++++|+|+|++.+++.|+++|++||++++++++.+|++...+++++.++..|+|.++.|||
T Consensus 255 ~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld 334 (843)
T PLN00116 255 KKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLE 334 (843)
T ss_pred ceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHH
Confidence 77765542223446779999999999999999999999999999998889999999878899999999999999999999
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCC
Q 003804 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (794)
Q Consensus 327 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 406 (794)
+|++|+|||.+++..++..+++++.+++...+++.||+++|++|+|||+.++++.|++++|+|||||+|++||.|+++++
T Consensus 335 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~ 414 (843)
T PLN00116 335 MIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGP 414 (843)
T ss_pred HHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCC
Confidence 99999999999888888777765433444567789999999999999999988888789999999999999999999999
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCCcccccccccCCCceEEEEEE
Q 003804 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQ 486 (794)
Q Consensus 407 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~aIe 486 (794)
|+++++++..+.++|++||.++|++.++|++++|||||+|.|++++.++++||++.....+.+++++.++.+|+++++||
T Consensus 415 n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~aIe 494 (843)
T PLN00116 415 NYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVAVQ 494 (843)
T ss_pred CCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCceEEEEEE
Confidence 88777555555579999999999999999999999999999999875444599887611156677888766999999999
Q ss_pred eCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhHHHHHHHHHHhhccC-CeeeEEcCcEEEEEeecccccc
Q 003804 487 CKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMG-GAEIIKSDPVVSFRETVLEKSC 565 (794)
Q Consensus 487 p~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~-~v~v~~~~p~V~yrETi~~~~~ 565 (794)
|.+++|+++|.+||++|.+|||+|+++.++|||++|+||||+|||||++||+++| + |++|++|+|+|+|||||.++++
T Consensus 495 P~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f-~~~vev~~s~p~V~yrETI~~~~~ 573 (843)
T PLN00116 495 CKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDF-MGGAEIKVSDPVVSFRETVLEKSC 573 (843)
T ss_pred ECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHh-hCCCcEEEcCCeEEEEeccccccc
Confidence 9999999999999999999999999977799999999999999999999999999 7 8999999999999999999876
Q ss_pred eeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCC-----------------------------------------CC
Q 003804 566 RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-----------------------------------------DD 604 (794)
Q Consensus 566 ~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~-----------------------------------------~~ 604 (794)
.....+.+++|++|+++++|++.++.+.+++|.+... ..
T Consensus 574 ~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~~~~~~~g 653 (843)
T PLN00116 574 RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKG 653 (843)
T ss_pred CcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceEEEECCcc
Confidence 5544567899999999999998775443333322100 01
Q ss_pred ccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEE
Q 003804 605 PKYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVE 684 (794)
Q Consensus 605 ~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~e 684 (794)
.+|+++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++|+++|+|+||||||+||
T Consensus 654 ~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~LlEPi~~ve 733 (843)
T PLN00116 654 VQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLLEPVYLVE 733 (843)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEeeceeEEE
Confidence 13788899999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred EEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCC
Q 003804 685 IQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG 764 (794)
Q Consensus 685 I~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~ 764 (794)
|+||++++|+|++||++|||+|++++..++++.++|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+||||++
T Consensus 734 I~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~~v~~dp~~~~ 813 (843)
T PLN00116 734 IQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEAG 813 (843)
T ss_pred EEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeEECCCCCCCch
Confidence 99999999999999999999999998877766799999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003804 765 SQASQLVLDIRKRKGLKEQMTPLSEYEDKL 794 (794)
Q Consensus 765 ~~~~~~~~~~r~rkGl~~~~~~~~~~~~~l 794 (794)
|+|+++|.++|+||||+|++|.+++|+|||
T Consensus 814 ~~a~~~~~~~R~rKGl~~~~~~~~~~~d~~ 843 (843)
T PLN00116 814 SQAAQLVADIRKRKGLKEQMPPLSEYEDKL 843 (843)
T ss_pred hHHHHHHHHHHhhCCCCCCCCCHHHhcccC
Confidence 999999999999999999999999999997
No 3
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=5.3e-146 Score=1312.00 Aligned_cols=776 Identities=68% Similarity=1.092 Sum_probs=695.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+..|||+ +||+|||||||+++|++.+|.+++...|+++++|++++|++||+||.++.+++.|.... ....+
T Consensus 18 ~irni~i---iGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~------~~~~~ 88 (836)
T PTZ00416 18 QIRNMSV---IAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDL------EDGDD 88 (836)
T ss_pred CcCEEEE---ECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeeccc------ccccC
Confidence 4569999 99999999999999999999998877888888999999999999999999999996210 11123
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++++.|||||||||.||..++..+++.+|+||+|||+.+|++.||+.+|+++...++|+|+|+||||+.+.||+.+++++
T Consensus 89 ~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~ 168 (836)
T PTZ00416 89 KQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEI 168 (836)
T ss_pred CCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~ 246 (794)
|..++++++++|..+..+..+......|.|..+||||+|+.+||+|++++|+..|+.+|+++...+.+++||++||++++
T Consensus 169 ~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~ 248 (836)
T PTZ00416 169 YQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKT 248 (836)
T ss_pred HHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCC
Confidence 99999999999998876554333334679999999999999999999999999999999999999999999999998877
Q ss_pred CceeecCC--CCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHH
Q 003804 247 RKWTSRNT--GSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (794)
Q Consensus 247 ~~~~~~~~--~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (794)
+++...+. .....++.|.+++++|+|+|++++++.|+++|++||+++|+++++++++...+.|+++++++|+|++++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~L 328 (836)
T PTZ00416 249 KKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTL 328 (836)
T ss_pred CEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHH
Confidence 76665432 2234578899999999999999999999999999999888999999976555689999999999999999
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
||+|++|+|||.+++..+...++.+..++.....++.|++++|++|+|||+.++++.|++++|+|||||+|++||.|+++
T Consensus 329 ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~ 408 (836)
T PTZ00416 329 LEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQ 408 (836)
T ss_pred HHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEe
Confidence 99999999999988777766666543333334567899999999999999999999888889999999999999999999
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCCcccccccccCCCceEEEE
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVA 484 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~a 484 (794)
++|++.+++++....+|++||.++|++..+|++|+|||||+|.|++++++++|||++... +.++.++.++++|+++++
T Consensus 409 ~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~~--~~~l~~i~~~~~Pv~~va 486 (836)
T PTZ00416 409 GPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSET--AHNIRDMKYSVSPVVRVA 486 (836)
T ss_pred CCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCCC--cccccccccCCCCeEEEE
Confidence 998776655433334699999999999999999999999999999986668999988765 667778887669999999
Q ss_pred EEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeeccccc
Q 003804 485 VQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS 564 (794)
Q Consensus 485 Iep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi~~~~ 564 (794)
|+|.+++|+++|.+||++|.+|||+|.++.++|||++|+||||+|||+|++||+++| ++|+|++|+|+|+|||||++.+
T Consensus 487 Iep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f-~~vev~~s~P~V~yrETI~~~s 565 (836)
T PTZ00416 487 VEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDY-ANIDIIVSDPVVSYRETVTEES 565 (836)
T ss_pred EEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHh-cCcceEecCCEEEEEEEecccc
Confidence 999999999999999999999999999977799999999999999999999999999 7899999999999999999998
Q ss_pred ceeEeecCCCceeEEEEEEeeCCccchhhhc---------------------------------------cCCCC--CCC
Q 003804 565 CRTVMSKSPNKHNRLYMEARPLEEGLAEAID---------------------------------------DGRIG--PRD 603 (794)
Q Consensus 565 ~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~---------------------------------------~g~i~--~~~ 603 (794)
+..+.++.++++++++++++|++.++.+.++ +|++. ...
T Consensus 566 ~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~~~~ 645 (836)
T PTZ00416 566 SQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVDVTK 645 (836)
T ss_pred cceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEecCC
Confidence 8777777888889999999999876432222 22220 000
Q ss_pred CccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEE
Q 003804 604 DPKYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLV 683 (794)
Q Consensus 604 ~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~ 683 (794)
..+|+++++++|++||+||+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++|+++|+|+||||||+|
T Consensus 646 ~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~v 725 (836)
T PTZ00416 646 GVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPMFLV 725 (836)
T ss_pred cccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeeeEEE
Confidence 12388999999999999999999999999999999999999998778888889999999999999999999999999999
Q ss_pred EEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCC
Q 003804 684 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEP 763 (794)
Q Consensus 684 eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~ 763 (794)
+|+||++++|+|+++|++|||+|+++++.+++..++|+|++|++|||||+++||++|+|+|+|+|+|+||++||+||||+
T Consensus 726 eI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp~dp~~~ 805 (836)
T PTZ00416 726 DITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVPGDPLEP 805 (836)
T ss_pred EEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECCCCCCCc
Confidence 99999999999999999999999999887776679999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003804 764 GSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 794 (794)
Q Consensus 764 ~~~~~~~~~~~r~rkGl~~~~~~~~~~~~~l 794 (794)
+|+|+++|.++|+||||++++|...+|+|||
T Consensus 806 ~~~a~~~~~~~R~rKGl~~~~~~~~~~~~~~ 836 (836)
T PTZ00416 806 GSKANEIVLSIRKRKGLKPEIPDLDNYLDKL 836 (836)
T ss_pred hhHHHHHHHHHHHhCCCCCCCCCHHHhcccC
Confidence 9999999999999999999999999999997
No 4
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-127 Score=1106.22 Aligned_cols=661 Identities=35% Similarity=0.541 Sum_probs=563.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCcee----ecCChhhHhhhCcccccceEEEEeecchhhhhccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR----MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~----~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (794)
...||+| +||+|||||||+++||+++|.+++ .|+++ +||++++||+|||||+++++++.|.
T Consensus 9 ~~RNigI---~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~---------- 73 (697)
T COG0480 9 RIRNIGI---VAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQEQERGITITSAATTLFWK---------- 73 (697)
T ss_pred cceEEEE---EeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc----------
Confidence 4578988 999999999999999999999998 78765 9999999999999999999999996
Q ss_pred cccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCC
Q 003804 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (794)
Q Consensus 83 ~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~ 162 (794)
.+++|||||||||+||..|+.+++|++|+||+||||++|+++||+++|+|+.++++|+++|+|||||. +++
T Consensus 74 -----~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~----~a~ 144 (697)
T COG0480 74 -----GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL----GAD 144 (697)
T ss_pred -----CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc----ccC
Confidence 14999999999999999999999999999999999999999999999999999999999999999999 666
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccC--ccceeeehhhHHHHHhhhcCCChHhHHHHhhccc
Q 003804 163 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 240 (794)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~ 240 (794)
+....+.++..+.. .|..-|+|+++. +.|| +|+.++..+.|++
T Consensus 145 ~~~~~~~l~~~l~~------------------~~~~v~~pIg~~~~f~g~----------------idl~~~~~~~~~~- 189 (697)
T COG0480 145 FYLVVEQLKERLGA------------------NPVPVQLPIGAEEEFEGV----------------IDLVEMKAVAFGD- 189 (697)
T ss_pred hhhhHHHHHHHhCC------------------CceeeeccccCccccCce----------------eEhhhcCeEEEcC-
Confidence 43333333332221 112224444442 3333 4556666666753
Q ss_pred ccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hcccc
Q 003804 241 FFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLP 319 (794)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P 319 (794)
.....|...| ....+...+.+..+++.+++.|+++|++||++ .+++.+++. ++|++.+. ..++|
T Consensus 190 ---~~~~~~~~ip-------~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g--~e~~~~~i~---~~i~~~~~~~~~~p 254 (697)
T COG0480 190 ---GAKYEWIEIP-------ADLKEIAEEAREKLLEALAEFDEELMEKYLEG--EEPTEEEIK---KALRKGTIAGKIVP 254 (697)
T ss_pred ---CcccceeeCC-------HHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCccHHHHH---HHHHHhhhccceee
Confidence 1111232222 33334445667889999999999999999998 778888886 55666554 34555
Q ss_pred c----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccc-cccCCCCCeEEEEEEeeecCCCCcceEEE
Q 003804 320 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAI-RNCDPEGPLMLYVSKMIPASDKGRFFAFG 388 (794)
Q Consensus 320 ~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~plva~VfK~~~~~~~g~~l~~~ 388 (794)
+ +++|||++++|||||.+.+.. .|..+++....+ ..+++++|++|+|||+..+++.|. ++|+
T Consensus 255 vl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~------~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~-l~~~ 327 (697)
T COG0480 255 VLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPI------KGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK-LTFV 327 (697)
T ss_pred EEeeecccCCcHHHHHHHHHHHCCChhhcccc------cccCCccccchhcccCCCCCceEEEEEEeEecCCCCe-EEEE
Confidence 3 899999999999999998743 232222222222 244668999999999999999887 9999
Q ss_pred EEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCc
Q 003804 389 RVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA 467 (794)
Q Consensus 389 RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~ 467 (794)
|||||+|++|+.+++.+ .+++ +||.+|+.|+|.++++++++.||||+++.||+++ .+| |+|+... .
T Consensus 328 RvysGtl~~G~~v~n~~----~~~~-----erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~--~tGdTl~~~~~--~ 394 (697)
T COG0480 328 RVYSGTLKSGSEVLNST----KGKK-----ERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA--TTGDTLCDENK--P 394 (697)
T ss_pred EEeccEEcCCCEEEeCC----CCcc-----EEEEEEEEccCCceeecccccCccEEEEEccccc--ccCCeeecCCC--c
Confidence 99999999999999543 3333 7999999999999999999999999999999997 677 9998764 6
Q ss_pred ccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCee
Q 003804 468 HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAE 546 (794)
Q Consensus 468 ~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~ 546 (794)
..+..+.++ +||++++|+|+++.|++||.+||++|++|||+++++.| ||||++|+|||||||||+++||+++| ||+
T Consensus 395 v~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~--~Ve 471 (697)
T COG0480 395 VILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREF--GVE 471 (697)
T ss_pred cccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhc--Cce
Confidence 788999998 99999999999999999999999999999999999997 99999999999999999999999999 999
Q ss_pred eEEcCcEEEEEeeccccccee----EeecCCCceeEEEEEEeeCCcc----chhhhccCCCCCCCCccchHHhHHHHHHH
Q 003804 547 IIKSDPVVSFRETVLEKSCRT----VMSKSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKYLNEIKDSVVAG 618 (794)
Q Consensus 547 v~~~~p~V~yrETi~~~~~~~----~~~~~~~~~~~v~~~~ePl~~~----~~~~i~~g~i~~~~~~~~~~~i~~~i~~g 618 (794)
+++++|+|+|||||++.+... .+++++++|+++++++||++.+ |.+.+.+|.+|.. |++ ++.+|
T Consensus 472 v~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~----yi~----~ve~G 543 (697)
T COG0480 472 VEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKE----YIP----AVEKG 543 (697)
T ss_pred EEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchh----hhH----HHHHH
Confidence 999999999999999887732 2367899999999999999964 7788888888776 888 46779
Q ss_pred HHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHH
Q 003804 619 FQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSV 698 (794)
Q Consensus 619 ~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~ 698 (794)
|++|+++|||+||||+|++|+|+|+++|.+. ++..+|..|+++||++|+.+|+|+||||||+|+|++|++++|+|+++
T Consensus 544 ~~~a~~~GpLag~pv~dvkv~L~dgs~h~vd--ss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~ 621 (697)
T COG0480 544 FREALKSGPLAGYPVVDVKVTLLDGSYHEVD--SSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGD 621 (697)
T ss_pred HHHHHhcCCCCCCceEeeEEEEEcCccccCC--CCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHh
Confidence 9999999999999999999999999999732 44557889999999999999999999999999999999999999999
Q ss_pred hhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHHHHHHHhc
Q 003804 699 LNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRK 778 (794)
Q Consensus 699 L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~r~rk 778 (794)
|++|||+|++++.+.++.++.|+|++|++|||||+++|||+|+|+|.|+|+|+||+++|.+ ++++++.+.|+||
T Consensus 622 l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~------~a~~ii~~~~~~~ 695 (697)
T COG0480 622 LNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSS------VAEEIIAKRRKRK 695 (697)
T ss_pred hhhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHH------HHHHHHHHhhhhc
Confidence 9999999999998866678999999999999999999999999999999999999999965 6999999999999
Q ss_pred CC
Q 003804 779 GL 780 (794)
Q Consensus 779 Gl 780 (794)
|+
T Consensus 696 ~~ 697 (697)
T COG0480 696 GL 697 (697)
T ss_pred CC
Confidence 85
No 5
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-126 Score=1031.41 Aligned_cols=768 Identities=40% Similarity=0.709 Sum_probs=706.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc-cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~-~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...||++ +||-+||||+|.+.|..++.--.+. ..-..+++|.+..|++||+||++...++.... .
T Consensus 127 ~irnV~l---~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D-----------~ 192 (971)
T KOG0468|consen 127 RIRNVGL---VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD-----------S 192 (971)
T ss_pred eEEEEEE---eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEec-----------C
Confidence 4578888 9999999999999998777622111 01124799999999999999999999988753 5
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~ 165 (794)
+++++.+|++|||||++|+.|+.++++.+|+||+|||+.+|++.+|+++++++.+.++|+++||||+||+++||+..|.+
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~D 272 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMD 272 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcC-CChHhHHHHhhcccccCC
Q 003804 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG-VDESKMMERLWGENFFDP 244 (794)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~-id~~~l~~~~wg~~~~~~ 244 (794)
+|-+++.+++++|..+.+|.... ..-++|..|||.|+|+..||||++.+||.+|+..++ ++...+..++||+-||+.
T Consensus 273 AY~KLrHii~~iN~~is~~s~~~--~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ 350 (971)
T KOG0468|consen 273 AYYKLRHIIDEINNLISTFSKDD--NPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHS 350 (971)
T ss_pred HHHHHHHHHHHhcchhhhccccc--ccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccc
Confidence 99999999999999988775431 234789999999999999999999999999999887 889999999999999999
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHH
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (794)
+|.+|..++.++ ...++|++|+|+|+|+++..+....++.+...|.++|+.|+.++++.+.+.|++-++++|+.....+
T Consensus 351 ktrkF~kk~~~~-~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgf 429 (971)
T KOG0468|consen 351 KTRKFVKKPPDG-SGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGF 429 (971)
T ss_pred cccccccCCCCC-cccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhh
Confidence 998888776533 3456999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
.|++++++|||.+....++.+.|.|+.+......+..|++++|++.++.|+++..+.-.|.+|+|||||+++.|+.|.++
T Consensus 430 vd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vl 509 (971)
T KOG0468|consen 430 VDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVL 509 (971)
T ss_pred hHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEe
Confidence 99999999999998888888888887777777888999999999999999999888778899999999999999999999
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCC-cccccccccCCCceEEE
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVD-AHPIRAMKFSVSPVVRV 483 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tgTl~~~~~~~-~~~~~~~~~~~~Pv~~~ 483 (794)
|.||+....++.....|+++++..+++..+|.+|+||.++.|.|+++.+.+|.|+++.+.++ ...|+++.+.+.|++++
T Consensus 510 geny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKi 589 (971)
T KOG0468|consen 510 GENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKV 589 (971)
T ss_pred eccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEE
Confidence 99998877777778899999999999999999999999999999999999999998876432 45678999999999999
Q ss_pred EEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeecccc
Q 003804 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 563 (794)
Q Consensus 484 aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi~~~ 563 (794)
+++|.++++++||.+||++.++.+|.+....+|+||++|.|-|||.|++++.+||+-| +.+++++++|.|.|.||+.++
T Consensus 590 aveP~nPsELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~y-seieikvaDPvv~F~Et~vet 668 (971)
T KOG0468|consen 590 AVEPLNPSELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSY-SEIEIKVADPVVRFCETVVET 668 (971)
T ss_pred EeccCChhhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHH-hhhceeecCceeEEEEeeecc
Confidence 9999999999999999999999999998888999999999999999999999999999 899999999999999999999
Q ss_pred cceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCC----------------------------------------
Q 003804 564 SCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRD---------------------------------------- 603 (794)
Q Consensus 564 ~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~---------------------------------------- 603 (794)
+...|..+.+|+.++|+|..||++.++.+.|++|.+.-..
T Consensus 669 ssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDT 748 (971)
T KOG0468|consen 669 SSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDT 748 (971)
T ss_pred cchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCc
Confidence 9889999999999999999999999999998887542110
Q ss_pred -----CccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceec
Q 003804 604 -----DPKYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 678 (794)
Q Consensus 604 -----~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llE 678 (794)
+...+..++++|++||||++++||||++|+++|+|.|.|+.+.++..+++++|+++++|++++.|+..|.|+|||
T Consensus 749 Lp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmE 828 (971)
T KOG0468|consen 749 LPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLME 828 (971)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcC
Confidence 011677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCC
Q 003804 679 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 758 (794)
Q Consensus 679 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~ 758 (794)
|+|.|||++|.+++..|+..|++|||+|....+..|+...+|+|++|+.|+|||.++||-.|+|+|.+++.|+||++||+
T Consensus 829 P~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VPG 908 (971)
T KOG0468|consen 829 PVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVPG 908 (971)
T ss_pred ceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC------------ChhHHHHHHHHHHhcCCCCCCCCccccccc
Q 003804 759 DPLEP------------GSQASQLVLDIRKRKGLKEQMTPLSEYEDK 793 (794)
Q Consensus 759 ~~~~~------------~~~~~~~~~~~r~rkGl~~~~~~~~~~~~~ 793 (794)
||+|+ +.+|++++.++||||||+|. ++...|+|+
T Consensus 909 DpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsed-vS~~kffd~ 954 (971)
T KOG0468|consen 909 DPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSED-VSINKFFDD 954 (971)
T ss_pred CccccccccccCCCCCcchhHHHHHHHhhhhcccccc-cccCcccch
Confidence 99996 46899999999999999999 588899885
No 6
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-126 Score=1028.46 Aligned_cols=652 Identities=25% Similarity=0.397 Sum_probs=567.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc--cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~--~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
+..||.| ++|.|+|||||++++||++|.+... ..|....||+++.||+|||||+++++++.|.
T Consensus 38 k~RNIgi---~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~------------ 102 (721)
T KOG0465|consen 38 KIRNIGI---SAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR------------ 102 (721)
T ss_pred hhcccce---EEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec------------
Confidence 4568888 9999999999999999999987662 1222469999999999999999999999996
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHH
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~ 164 (794)
+++||+||||||.||..||++|+|+.||||+|+|++.|++.||..+|+|+.++++|.|.|||||||. ++++-
T Consensus 103 ----~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm----Ga~~~ 174 (721)
T KOG0465|consen 103 ----DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM----GASPF 174 (721)
T ss_pred ----cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc----CCChH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 99965
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcC--CChHhHHHHhhccccc
Q 003804 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWGENFF 242 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~--id~~~l~~~~wg~~~~ 242 (794)
.+.+.+ +..+.. .|+.-++|+++. ++|. +|+...++.+|.+
T Consensus 175 ~~l~~i-------~~kl~~-----------~~a~vqiPig~e----------------~~f~GvvDlv~~kai~~~g--- 217 (721)
T KOG0465|consen 175 RTLNQI-------RTKLNH-----------KPAVVQIPIGSE----------------SNFKGVVDLVNGKAIYWDG--- 217 (721)
T ss_pred HHHHHH-------HhhcCC-----------chheeEcccccc----------------ccchhHHhhhhceEEEEcC---
Confidence 544433 333321 344557887765 2343 7777877888842
Q ss_pred CCCCC-ceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc
Q 003804 243 DPATR-KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 320 (794)
Q Consensus 243 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 320 (794)
+.+ .+... +.++...+...+.+..|+|.+++.|+++.+.||++ .+++.++++ .+++++.+ +.|+|+
T Consensus 218 --~~g~~i~~~-----eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee--~~ps~~~l~---~aIRr~Ti~r~fvPV 285 (721)
T KOG0465|consen 218 --ENGEIVRKD-----EIPEDLEELAEEKRQALIETLADVDETLAEMFLEE--EEPSAQQLK---AAIRRATIKRSFVPV 285 (721)
T ss_pred --CCCceeEec-----cCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcc--CCCCHHHHH---HHHHHHHhhcceeeE
Confidence 222 22222 34567788888999999999999999999999998 778888887 68888766 689997
Q ss_pred ----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCC-CeEEEEEEeeecCCCCcceEEEE
Q 003804 321 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEG-PLMLYVSKMIPASDKGRFFAFGR 389 (794)
Q Consensus 321 ----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-plva~VfK~~~~~~~g~~l~~~R 389 (794)
||+|||+|++|||||.|..++.+.+..+ .+ ++.....+++. ||+|++||+...++ |+ ++|+|
T Consensus 286 l~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~----~~-ekv~l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvR 358 (721)
T KOG0465|consen 286 LCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETN----SK-EKVTLSPSRDKDPFVALAFKLEEGRF-GQ-LTYVR 358 (721)
T ss_pred EechhhcccCcchHHHHHHHhCCChhhhcccccccCCC----Cc-cceEeccCCCCCceeeeEEEeeecCc-cc-eEEEE
Confidence 8999999999999999998876652111 11 13334444444 99999999999888 77 99999
Q ss_pred EEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcc
Q 003804 390 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAH 468 (794)
Q Consensus 390 V~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~ 468 (794)
||+|+|++||.+| |.+++++ +|+.+|+.||++..++|+++.||||||+.|++. .+| |+++.... ..
T Consensus 359 vYqG~L~kG~~iy----N~rtgKK-----vrv~RL~rmHa~~medV~~v~AG~I~alfGidc---asGDTftd~~~~-~~ 425 (721)
T KOG0465|consen 359 VYQGTLSKGDTIY----NVRTGKK-----VRVGRLVRMHANDMEDVNEVLAGDICALFGIDC---ASGDTFTDKQNL-AL 425 (721)
T ss_pred EeeeeecCCcEEE----ecCCCce-----eEhHHHhHhcccccchhhhhhccceeeeecccc---ccCceeccCccc-cc
Confidence 9999999999999 7778876 899999999999999999999999999999954 477 99987421 56
Q ss_pred cccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeee
Q 003804 469 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 547 (794)
Q Consensus 469 ~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v 547 (794)
.+..|.+| +||+++||+|.+..|.++|.+||.++.+|||+|++..| |+||++|+|||||||||..+||+++| |+++
T Consensus 426 ~m~si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy--~~~~ 502 (721)
T KOG0465|consen 426 SMESIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREY--KVDA 502 (721)
T ss_pred eeeeeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHh--CCcc
Confidence 67888886 99999999999999999999999999999999999998 99999999999999999999999999 9999
Q ss_pred EEcCcEEEEEeecccccceeE----eecCCCceeEEEEEEeeCCc------cchhhhccCCCCCCCCccchHHhHHHHHH
Q 003804 548 IKSDPVVSFRETVLEKSCRTV----MSKSPNKHNRLYMEARPLEE------GLAEAIDDGRIGPRDDPKYLNEIKDSVVA 617 (794)
Q Consensus 548 ~~~~p~V~yrETi~~~~~~~~----~~~~~~~~~~v~~~~ePl~~------~~~~~i~~g~i~~~~~~~~~~~i~~~i~~ 617 (794)
.+|+|+|+|||||+.++++.. ++++.++++++...++|++. +|.+++.+|.+|.+ |++ ++++
T Consensus 503 ~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~----f~p----a~ek 574 (721)
T KOG0465|consen 503 ELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQ----FIP----AVEK 574 (721)
T ss_pred ccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchh----HHH----HHHH
Confidence 999999999999999988754 44578889999999999984 37778888888766 887 7899
Q ss_pred HHHHHHHcCCcCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHH
Q 003804 618 GFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIY 696 (794)
Q Consensus 618 g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~ 696 (794)
||.++++.|||.|+|+.|+++.|.||.+|. ||++.+ |+.|++.||++|+.+|+|++|||||+|+|++|+|++|.|+
T Consensus 575 g~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~ela---f~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi 651 (721)
T KOG0465|consen 575 GFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELA---FMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVI 651 (721)
T ss_pred HHHHHHhcCCccCCcccceEEEEecCCcCcccccHHH---HHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhh
Confidence 999999999999999999999999999998 888876 5689999999999999999999999999999999999999
Q ss_pred HHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHHH
Q 003804 697 SVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVL 772 (794)
Q Consensus 697 ~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~~ 772 (794)
++|++|+|.|.+.+..+ +.++|.|.|||++||||+++|||+|+|+|.|+|+|++|+|+|.+. +++++.
T Consensus 652 ~~L~kR~a~I~~~d~~~--~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~v------q~~~~~ 719 (721)
T KOG0465|consen 652 GDLNKRKAQITGIDSSE--DYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDV------QDQLVH 719 (721)
T ss_pred hhhhhcccEEecccCCC--ceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHH------HHHhhc
Confidence 99999999999987655 589999999999999999999999999999999999999999885 666654
No 7
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=3.8e-120 Score=1080.15 Aligned_cols=671 Identities=41% Similarity=0.689 Sum_probs=579.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+..||++ +||+|||||||+++||+.+|.+++...|.++++|+.++|++||||++++.+++.|.. +
T Consensus 19 ~iRni~i---igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~------------~ 83 (731)
T PRK07560 19 QIRNIGI---IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY------------E 83 (731)
T ss_pred cccEEEE---EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe------------c
Confidence 3568999 999999999999999999999988767778899999999999999999999999852 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++++.|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+...+++..++++
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~ 163 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEM 163 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCC-CCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLL-GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~ 245 (794)
++++.+++++++.++..+..+.. +.+.+.|..++|.|+|+.+||+|.++.+.+.. +
T Consensus 164 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~-----~------------------ 220 (731)
T PRK07560 164 QQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTG-----I------------------ 220 (731)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhC-----C------------------
Confidence 99999999999988876543221 23456788899999999999999876432211 0
Q ss_pred CCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHH
Q 003804 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (794)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (794)
.| +++++.|+++ +.++ +.+|+|+.+.||
T Consensus 221 ----------------~~-------------------~~l~e~~~~~-----~~~~------------l~~~~Pv~~~Ll 248 (731)
T PRK07560 221 ----------------KF-------------------KDIIDYYEKG-----KQKE------------LAEKAPLHEVVL 248 (731)
T ss_pred ----------------CH-------------------HHHHHHHhcC-----CHHH------------HHhhccchhHHH
Confidence 01 0122222111 1111 135799999999
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcC
Q 003804 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (794)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~ 405 (794)
|+|++|+|||.++++++...++.+...++.....+.|++++|++|+|||+.++++.|. ++|+|||||+|++||.|++.+
T Consensus 249 d~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~-va~~RV~sGtL~~Gd~v~~~~ 327 (731)
T PRK07560 249 DMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGE-VATGRVFSGTLRKGQEVYLVG 327 (731)
T ss_pred HHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCe-EEEEEEEEeEEcCCCEEEEcC
Confidence 9999999999998887777777654333334456789999999999999999998886 999999999999999999754
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEE
Q 003804 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVA 484 (794)
Q Consensus 406 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~a 484 (794)
. +.+ ++|++|+.++|++..+++++.|||||+|.|++++ .+| ||++... ..++.++.+.++|+++++
T Consensus 328 ~----~~~-----~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~--~~GdtL~~~~~--~~~~~~~~~~p~Pv~~~a 394 (731)
T PRK07560 328 A----KKK-----NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDA--RAGETVVSVED--MTPFESLKHISEPVVTVA 394 (731)
T ss_pred C----CCc-----eEeheehhhhcCCCceeeeECCCCEEEEEccccc--ccCCEEeCCCc--cccccccccCCCCeEEEE
Confidence 2 332 6999999999999999999999999999999887 467 9987765 566777754459999999
Q ss_pred EEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeecccc
Q 003804 485 VQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 563 (794)
Q Consensus 485 Iep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi~~~ 563 (794)
|+|.++.|.++|.+||++|++|||+|+|.++ +|||++|+||||+|||++++||+++| ++++++++|+|+|||||.++
T Consensus 395 I~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~--~vev~~~~p~V~yrETI~~~ 472 (731)
T PRK07560 395 IEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY--GIEVVTSEPIVVYRETVRGK 472 (731)
T ss_pred EEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh--CCceEecCCEEEEEEecccC
Confidence 9999999999999999999999999999997 89999999999999999999999999 99999999999999999998
Q ss_pred cceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCC---------------------------------------CC
Q 003804 564 SCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR---------------------------------------DD 604 (794)
Q Consensus 564 ~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~---------------------------------------~~ 604 (794)
++. ....++++|++++++++|++.+..+.++.|.+... .+
T Consensus 473 ~~~-~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~g 551 (731)
T PRK07560 473 SQV-VEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKG 551 (731)
T ss_pred ccc-eEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCC
Confidence 742 22336788999999999998775444433322100 01
Q ss_pred ccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEE
Q 003804 605 PKYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVE 684 (794)
Q Consensus 605 ~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~e 684 (794)
..+.++++++|++||+||+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++|+++|+|+||||||+|+
T Consensus 552 g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~ve 631 (731)
T PRK07560 552 IQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVD 631 (731)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEE
Confidence 12567888999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred EEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCC
Q 003804 685 IQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG 764 (794)
Q Consensus 685 I~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~ 764 (794)
|++|++++|+|+++|++|||+|.+++..+ +.+.|+|++|++|||||+++|||+|+|+|+|+|+|+||++||++
T Consensus 632 I~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~----- 704 (731)
T PRK07560 632 INVPQDYMGAVTREIQGRRGKILDMEQEG--DMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVPDS----- 704 (731)
T ss_pred EEecHHHhhHHHHHHHhcCCeeeeeecCC--CcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCCHH-----
Confidence 99999999999999999999999887643 57999999999999999999999999999999999999999975
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCcccccc
Q 003804 765 SQASQLVLDIRKRKGLKEQMTPLSEYED 792 (794)
Q Consensus 765 ~~~~~~~~~~r~rkGl~~~~~~~~~~~~ 792 (794)
+++++++++|+||||+++||.+++|+|
T Consensus 705 -~~~~ii~~~r~rKGl~~~~~~~~~~~~ 731 (731)
T PRK07560 705 -LQLDIVRQIRERKGLKPELPKPEDFLS 731 (731)
T ss_pred -HHHHHHHHHHhhCCCCCCCCChhhhcC
Confidence 599999999999999999999999986
No 8
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-119 Score=992.74 Aligned_cols=758 Identities=38% Similarity=0.680 Sum_probs=650.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
..+.|+|+ ++|+|||||||+++|+..+|.|++..+|+.|++|++++||.||||++++.+++...
T Consensus 7 ~~irn~~~---vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~------------- 70 (887)
T KOG0467|consen 7 EGIRNICL---VAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK------------- 70 (887)
T ss_pred CceeEEEE---EEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC-------------
Confidence 34569999 99999999999999999999999999999999999999999999999999997764
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~ 165 (794)
++.+||||+|||.||.+|+..|.+.+|+|+++||+++|++.||..++||++..+..+++|||||||+++||+++|.+
T Consensus 71 ---~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~e 147 (887)
T KOG0467|consen 71 ---DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQE 147 (887)
T ss_pred ---ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCC-----------CCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHH
Q 003804 166 AYQTFQKVIENANVIMATYEDPLL-----------GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMME 234 (794)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~ 234 (794)
+|.++-++++++|..+.+|..... .-++|.|.++||.|.++.+||+|.+++||+.|..+.+.+...+..
T Consensus 148 a~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k 227 (887)
T KOG0467|consen 148 AYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLK 227 (887)
T ss_pred HHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhh
Confidence 999999999999999986532110 125799999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHH-HHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHH
Q 003804 235 RLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIIN-ICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRV 313 (794)
Q Consensus 235 ~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e-~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i 313 (794)
.+||++|++++++++..... .+..+++|.+++|+|+|++++ ++.+.|.+.+++....+|+.+.+.+++ .++.++
T Consensus 228 ~lwgd~y~~~ktk~I~~~~~-~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~ll~~i 302 (887)
T KOG0467|consen 228 FLWGDRYIDPKTKRICEGKK-LKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NLLDAI 302 (887)
T ss_pred hhccceeecchhhhhhcccC-cccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HHHHHH
Confidence 99999999999877654432 233489999999999999999 556668899999999999999888876 888999
Q ss_pred HhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCC---cccccccccccCCCCCeEEEEEEeeecCCCC----cceE
Q 003804 314 MQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPL---DDAYANAIRNCDPEGPLMLYVSKMIPASDKG----RFFA 386 (794)
Q Consensus 314 ~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~plva~VfK~~~~~~~g----~~l~ 386 (794)
|++|+|+.++.+-+++..+|+|.+.+..+...+...+. +.+.+.++..|++++|.++||.|+...+.+. ++++
T Consensus 303 m~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~ 382 (887)
T KOG0467|consen 303 MSTWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLA 382 (887)
T ss_pred HHhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhhee
Confidence 99999999999999999999999999998887765321 1233556777899999999999998755432 2589
Q ss_pred EEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCC
Q 003804 387 FGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVD 466 (794)
Q Consensus 387 ~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tgTl~~~~~~~ 466 (794)
|+||||||++.|+.+|+.++. +...+.+...+|.++|+++|++..+.+++++|++++|.| .....+++|||+...
T Consensus 383 ~ari~sgTlr~g~~v~v~~pd--~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~~~-- 457 (887)
T KOG0467|consen 383 FARIFSGTLRVGQVVYVLGPD--PLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSKVP-- 457 (887)
T ss_pred eeeeccCceeeccEeeecCCC--CCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceecccCC--
Confidence 999999999999999998873 333344667899999999999999999999999999999 777778889999754
Q ss_pred cccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhHHHHHHHHHHhhccCCee
Q 003804 467 AHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAE 546 (794)
Q Consensus 467 ~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~ 546 (794)
+.++....|...|.+.++|+|.++.++++|.++|+.|+..||++++..+++||+++...||+|||.|+.+|+. | ++++
T Consensus 458 ~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-f-a~i~ 535 (887)
T KOG0467|consen 458 CGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-F-AKIE 535 (887)
T ss_pred CcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-h-hceE
Confidence 4444446777799999999999999999999999999999999999989999999999999999999999999 8 8999
Q ss_pred eEEcCcEEEEEeeccccccee-------EeecCCCceeEEEEEEeeCCccchhhhcc----------C------------
Q 003804 547 IIKSDPVVSFRETVLEKSCRT-------VMSKSPNKHNRLYMEARPLEEGLAEAIDD----------G------------ 597 (794)
Q Consensus 547 v~~~~p~V~yrETi~~~~~~~-------~~~~~~~~~~~v~~~~ePl~~~~~~~i~~----------g------------ 597 (794)
+++++|.|+||||+.+.+... .....+.+.-.+.+++-|+...+++.... |
T Consensus 536 i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k 615 (887)
T KOG0467|consen 536 ISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQK 615 (887)
T ss_pred EEecCCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhcccccccccccccc
Confidence 999999999999996544321 00001111123334444443211100000 0
Q ss_pred -C---------------------------------CCC-CC--------Ccc----------chHHhHHHHHHHHHHHHH
Q 003804 598 -R---------------------------------IGP-RD--------DPK----------YLNEIKDSVVAGFQWASK 624 (794)
Q Consensus 598 -~---------------------------------i~~-~~--------~~~----------~~~~i~~~i~~g~~~a~~ 624 (794)
. +.+ .. +.+ +...+-+++..|||.++.
T Consensus 616 ~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~ 695 (887)
T KOG0467|consen 616 GSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATS 695 (887)
T ss_pred ccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhc
Confidence 0 000 00 000 122355799999999999
Q ss_pred cCCcCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcc
Q 003804 625 EGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKR 703 (794)
Q Consensus 625 ~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rr 703 (794)
+||||.+|++|++|.+..+.... ++...-.||++.|++.+|++|++...|+|+.|||.|+|++..+++|+||.+|++|+
T Consensus 696 sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~ 775 (887)
T KOG0467|consen 696 SGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRH 775 (887)
T ss_pred cCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhc
Confidence 99999999999999998854442 22222237999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCC----------------ChhH
Q 003804 704 GHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEP----------------GSQA 767 (794)
Q Consensus 704 g~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~----------------~~~~ 767 (794)
|+|++++..+||+.|.|+|.+|+.|+|||+.++|..|+|.|+.++.|+||+.++.||||. +|.|
T Consensus 776 gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~A 855 (887)
T KOG0467|consen 776 GKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENIA 855 (887)
T ss_pred chhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhHH
Confidence 999999999999999999999999999999999999999999999999999999999983 5899
Q ss_pred HHHHHHHHHhcCC--CCCCCCcccccccC
Q 003804 768 SQLVLDIRKRKGL--KEQMTPLSEYEDKL 794 (794)
Q Consensus 768 ~~~~~~~r~rkGl--~~~~~~~~~~~~~l 794 (794)
+++|+.+|||||| .|+|++++++|++|
T Consensus 856 rkYMdaVRRRKGLfVEEkIVE~AEKQRTL 884 (887)
T KOG0467|consen 856 RKYMDAVRRRKGLFVEEKIVEHAEKQRTL 884 (887)
T ss_pred HHHHHHHHhhcCCchHHHHhhhHHhhccc
Confidence 9999999999999 89999999999986
No 9
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=7.3e-116 Score=1040.48 Aligned_cols=662 Identities=39% Similarity=0.663 Sum_probs=565.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
...||++ +||+|||||||+++|++.+|.+++...|+.+++|+.++|++||+|+.++.+++.|. .+
T Consensus 18 ~irnI~i---vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~------------~~ 82 (720)
T TIGR00490 18 FIRNIGI---VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE------------YE 82 (720)
T ss_pred cccEEEE---EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe------------ec
Confidence 4579999 99999999999999999999998876777788999999999999999998886653 23
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++++++||||||||.+|..++..+++.+|+||+|||+.+|++.+|+.+|+++...++|+++|+||||+...++...++++
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~ 162 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQEL 162 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred HHHHHHHHHHhhhhhhcccCCC-CCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPL-LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~ 245 (794)
++++.+++..++..+..+..+. .+.+.+.|..+++.|+|++.+|+|++++|.+.. ++
T Consensus 163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~-----~~----------------- 220 (720)
T TIGR00490 163 QERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTG-----IG----------------- 220 (720)
T ss_pred HHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcC-----CC-----------------
Confidence 9999999999988875432211 123446788889999999999999887542210 00
Q ss_pred CCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHH
Q 003804 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (794)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (794)
+ ++ |.+++.. .. .++ +.+|+|++++||
T Consensus 221 -----------------~--------~~------------l~~~~~~--~~--~~~------------~~~~~Pv~~~Ll 247 (720)
T TIGR00490 221 -----------------F--------KD------------IYKYCKE--DK--QKE------------LAKKSPLHQVVL 247 (720)
T ss_pred -----------------H--------HH------------HHHHHHh--cc--HHH------------HhhhhhHHHHHH
Confidence 0 11 2223322 00 011 125899999999
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcC
Q 003804 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (794)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~ 405 (794)
|+|++|+|||.+++.+++..++.+..+++.......|++++|++|+|||+..+++.|. ++|+|||||+|++||.|++.+
T Consensus 248 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~-ia~~RV~sGtL~~G~~l~~~~ 326 (720)
T TIGR00490 248 DMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGE-VAVGRLYSGTIRPGMEVYIVD 326 (720)
T ss_pred HHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcE-EEEEEEEeCEEcCCCEEEEcC
Confidence 9999999999988777766665543223333567789999999999999999988887 999999999999999999764
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEE
Q 003804 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVA 484 (794)
Q Consensus 406 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~a 484 (794)
. +.+ ++|.+|+.++|.+.+++++|.|||||+|.|++++ .+| ||++.... ..+++++.+.++|+++++
T Consensus 327 ~----~~~-----~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~--~~GdtL~~~~~~-~~~~~~~~~~~~Pv~~~~ 394 (720)
T TIGR00490 327 R----KAK-----ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDA--VAGETICTTVEN-ITPFESIKHISEPVVTVA 394 (720)
T ss_pred C----CCe-----eEeeEEEEeccCCccCccEECCCCEEEEECcccc--ccCceeecCCcc-cccCcccccCCCceEEEE
Confidence 3 332 7999999999999999999999999999999987 456 99876531 344566654459999999
Q ss_pred EEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeecccc
Q 003804 485 VQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 563 (794)
Q Consensus 485 Iep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi~~~ 563 (794)
|+|.++.|+++|.+||++|++|||+|++.++ +|||++|+||||+|||++++||+++| |+++++++|+|+|||||++.
T Consensus 395 i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~--~vev~~~~P~V~YrETi~~~ 472 (720)
T TIGR00490 395 IEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY--GLDVETSPPIVVYRETVTGT 472 (720)
T ss_pred EEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh--CCceeecCCEEEEEEecccc
Confidence 9999999999999999999999999999997 89999999999999999999999999 99999999999999999998
Q ss_pred cc-eeEeecCCCceeEEEEEEeeCCccchhhhccCCCCC------------------------------C-------CCc
Q 003804 564 SC-RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGP------------------------------R-------DDP 605 (794)
Q Consensus 564 ~~-~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~------------------------------~-------~~~ 605 (794)
++ ... ..+++|++++++++|+++++.+.++.|.++. . ...
T Consensus 473 ~~~~~~--~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg 550 (720)
T TIGR00490 473 SPVVEG--KSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGI 550 (720)
T ss_pred ccceEE--EcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCC
Confidence 76 232 3367899999999999988665555554321 0 011
Q ss_pred cchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEE
Q 003804 606 KYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEI 685 (794)
Q Consensus 606 ~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI 685 (794)
.+.++++++|++||+||+++||||||||+||+|+|+|+++|.|+.++..++|++|+++||++|+++|+|+||||||+|||
T Consensus 551 ~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei 630 (720)
T TIGR00490 551 QYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFI 630 (720)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEE
Confidence 25678889999999999999999999999999999999999877778888999999999999999999999999999999
Q ss_pred EeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCCh
Q 003804 686 QAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGS 765 (794)
Q Consensus 686 ~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~ 765 (794)
+||++++|+|+++|++|||+|++++... +.++|+|++|++|||||+++||++|+|+|+|+|+|+||++||++
T Consensus 631 ~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp~~------ 702 (720)
T TIGR00490 631 NVPQDMMGAATREIQNRRGQILEMKQEG--DMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQN------ 702 (720)
T ss_pred EccHHHHhHHHHHHhhCCceeeeeccCC--CcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCCHH------
Confidence 9999999999999999999999886532 57999999999999999999999999999999999999999976
Q ss_pred hHHHHHHHHHHhcCCCCC
Q 003804 766 QASQLVLDIRKRKGLKEQ 783 (794)
Q Consensus 766 ~~~~~~~~~r~rkGl~~~ 783 (794)
++++++.++|+||||+++
T Consensus 703 ~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 703 LQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred HHHHHHHHHHhhcCCCCC
Confidence 499999999999999875
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=4.4e-113 Score=1014.86 Aligned_cols=658 Identities=28% Similarity=0.413 Sum_probs=557.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc--cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~--~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
+..||+| +||+|||||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++..++.|.
T Consensus 7 ~irni~i---iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~------------ 71 (691)
T PRK12739 7 KTRNIGI---MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------ 71 (691)
T ss_pred CeeEEEE---ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC------------
Confidence 4579999 9999999999999999999987652 0112579999999999999999999999996
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHH
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~ 164 (794)
+++|||||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|.|+++||||+. +++.+
T Consensus 72 ----~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~----~~~~~ 143 (691)
T PRK12739 72 ----GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI----GADFF 143 (691)
T ss_pred ----CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 77644
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCC
Q 003804 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~ 244 (794)
+..+ +++..+.. .+...++|++.. .++.- .+|+.++..++|++...
T Consensus 144 ~~~~-------~i~~~l~~-----------~~~~~~iPis~~-~~f~g-------------~vd~~~~~~~~~~~~~~-- 189 (691)
T PRK12739 144 RSVE-------QIKDRLGA-----------NAVPIQLPIGAE-DDFKG-------------VIDLIKMKAIIWDDETL-- 189 (691)
T ss_pred HHHH-------HHHHHhCC-----------CceeEEeccccc-ccceE-------------EEEcchhhhhhccCCCC--
Confidence 4333 33333221 112224554332 11110 16777888899986411
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc---
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA--- 320 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 320 (794)
..++... +.+..+.+++++++++|++.+++.|+++|++||++ .+++.+++. .++.+.++ .+|+|+
T Consensus 190 -~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~g 258 (691)
T PRK12739 190 -GAKYEEE-----DIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEG--EEITEEEIK---AAIRKATINMEFFPVLCG 258 (691)
T ss_pred -CCeeEEc-----CCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhcc--CCCCHHHHH---HHHHHHHHcCCEEEEEec
Confidence 1223322 23456788999999999999999999999999987 678888886 35555544 589997
Q ss_pred -------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEee
Q 003804 321 -------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSG 393 (794)
Q Consensus 321 -------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG 393 (794)
+++|||+|++++|+|.+++..+...... + ....+.|++++|++|+|||+.++++.|+ ++|+|||||
T Consensus 259 Sa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~----~--~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sG 331 (691)
T PRK12739 259 SAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDT----E--EEIERPASDDEPFAALAFKIMTDPFVGR-LTFFRVYSG 331 (691)
T ss_pred cccCCccHHHHHHHHHHHCCChhhccccccccCCC----C--cceeeccCCCCCeEEEEEEeeeCCCCCe-EEEEEEeee
Confidence 7999999999999998876554432211 1 2356789999999999999999999887 999999999
Q ss_pred eecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccc
Q 003804 394 KVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRA 472 (794)
Q Consensus 394 ~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 472 (794)
+|++||.|+ |.+++++ ++|.+||.++|++..+++++.|||||+|.|++++ ++| ||++... +..+++
T Consensus 332 tL~~g~~v~----~~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~l~~ 398 (691)
T PRK12739 332 VLESGSYVL----NTTKGKK-----ERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT--TTGDTLCDEKA--PIILES 398 (691)
T ss_pred EEcCCCEEE----eCCCCce-----EEecceEEEecCCcccccccCCCCEEEEeCCCcc--cCCCEEeCCCC--ccccCC
Confidence 999999998 4444443 7999999999999999999999999999999986 788 9988765 567788
Q ss_pred cccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcC
Q 003804 473 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 551 (794)
Q Consensus 473 ~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~ 551 (794)
+.++ +|+++++|+|.++.|+++|.+||++|++|||+|+|.++ +|||++|+||||||||+|++||+++| ++++++++
T Consensus 399 ~~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f--~vev~~s~ 475 (691)
T PRK12739 399 MEFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREF--KVEANVGA 475 (691)
T ss_pred CCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHh--CCeeEecC
Confidence 8885 99999999999999999999999999999999999987 89999999999999999999999999 99999999
Q ss_pred cEEEEEeecccccceeEe----ecCCCceeEEEEEEeeCCcc----chhhhccCCCCCCCCccchHHhHHHHHHHHHHHH
Q 003804 552 PVVSFRETVLEKSCRTVM----SKSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWAS 623 (794)
Q Consensus 552 p~V~yrETi~~~~~~~~~----~~~~~~~~~v~~~~ePl~~~----~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~ 623 (794)
|+|+|||||.+.++.... +...+++++++++++|++.+ |.+.+.+|.+ .++++++|++||+||+
T Consensus 476 p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~--------~~~~~~av~~G~~~a~ 547 (691)
T PRK12739 476 PQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVI--------PKEYIPAVEKGLEEAM 547 (691)
T ss_pred CEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcC--------cHHHHHHHHHHHHHHH
Confidence 999999999988654322 23456789999999999764 5566777764 4567779999999999
Q ss_pred HcCCcCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhc
Q 003804 624 KEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQK 702 (794)
Q Consensus 624 ~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~r 702 (794)
++|||||+||+||+|+|+|+++|. |+.+ .+|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|
T Consensus 548 ~~GpL~g~pv~~v~v~l~d~~~h~~~s~~---~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~R 624 (691)
T PRK12739 548 KNGVLAGYPMVDVKATLYDGSYHDVDSSE---LAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRR 624 (691)
T ss_pred hcCCcCCCceeeEEEEEEEeccCCCCCcH---HHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhc
Confidence 999999999999999999999996 5443 457799999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHHHHH
Q 003804 703 RGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDI 774 (794)
Q Consensus 703 rg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~ 774 (794)
||+|+++++.++ .+.|+|.+|++|+|||+++||++|+|+|+|+|+|+||+++|++. +++++++.
T Consensus 625 Rg~i~~~~~~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~------~~~ii~~~ 688 (691)
T PRK12739 625 RGQIQGMEARGG--AQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNI------AEEIIKKR 688 (691)
T ss_pred CCeEECccccCC--cEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHH------HHHHHHHh
Confidence 999999887653 67899999999999999999999999999999999999999764 88887653
No 11
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.3e-112 Score=1009.94 Aligned_cols=659 Identities=28% Similarity=0.397 Sum_probs=552.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc--cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~--~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (794)
.+..||+| +||+|||||||+++||+.+|.+.+. ..+.++++|+.++|++||+|++++.+++.|.
T Consensus 8 ~~Irni~i---iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----------- 73 (693)
T PRK00007 8 ERYRNIGI---MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 73 (693)
T ss_pred cceeEEEE---ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-----------
Confidence 34679999 9999999999999999999987652 1112579999999999999999999999996
Q ss_pred ccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCH
Q 003804 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~ 163 (794)
+++|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+. +++.
T Consensus 74 -----~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~----~~~~ 144 (693)
T PRK00007 74 -----DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT----GADF 144 (693)
T ss_pred -----CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC----CCCH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 7774
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccC
Q 003804 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (794)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~ 243 (794)
.++.+.+++ .++.. +...++|++ +..|+.- -+|+..+..++|++.
T Consensus 145 ~~~~~~i~~---~l~~~---------------~~~~~ipis-a~~~f~g-------------~~d~~~~~~~~~~~~--- 189 (693)
T PRK00007 145 YRVVEQIKD---RLGAN---------------PVPIQLPIG-AEDDFKG-------------VVDLVKMKAIIWNEA--- 189 (693)
T ss_pred HHHHHHHHH---HhCCC---------------eeeEEecCc-cCCcceE-------------EEEcceeeeeecccC---
Confidence 444333332 22211 111244443 3222110 045556667788642
Q ss_pred CCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc--
Q 003804 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 320 (794)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 320 (794)
..+.++...+ .+....+++.+++++|++.+++.|+++|++||++ .+++.++++ .+++++++ .+|+|+
T Consensus 190 ~~~~~~~~~~-----~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~l~~~~l~---~~l~~~~~~~~~~Pv~~ 259 (693)
T PRK00007 190 DLGATFEYEE-----IPADLKDKAEEYREKLIEAAAEADEELMEKYLEG--EELTEEEIK---AALRKATIANEIVPVLC 259 (693)
T ss_pred CCCCcceEcc-----CCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCc--CCCCHHHHH---HHHHHHHhcCcEEEEEe
Confidence 1122233222 2345667888999999999999999999999996 889999987 55666655 589997
Q ss_pred --------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEe
Q 003804 321 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 392 (794)
Q Consensus 321 --------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~s 392 (794)
+++|||+|++++|+|.+++..+.. ..+++.....+.|++++|++|+|||+.++++.|+ ++|+||||
T Consensus 260 gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~s 333 (693)
T PRK00007 260 GSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGI-----LPDGEEEEVERKASDDEPFSALAFKIMTDPFVGK-LTFFRVYS 333 (693)
T ss_pred cccccCcCHHHHHHHHHHHCCChhhccccccc-----CCCccccceeecCCCCCCeEEEEEEeeecCCCCc-EEEEEEee
Confidence 599999999999999876543210 0011123456789999999999999999999887 99999999
Q ss_pred eeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccccc
Q 003804 393 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 471 (794)
Q Consensus 393 G~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~ 471 (794)
|+|++||.|++ .+++++ ++|++|+.++|.+..+|+++.|||||++.|++++ .+| ||++.+. +..++
T Consensus 334 Gtl~~g~~v~~----~~~~~~-----eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdtL~~~~~--~~~l~ 400 (693)
T PRK00007 334 GVLESGSYVLN----STKGKK-----ERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT--TTGDTLCDEKN--PIILE 400 (693)
T ss_pred eEEcCCCEEEe----CCCCce-----eEeceeEEeccCCcccccccCCCcEEEEeCCccC--CcCCEeeCCCC--ccccC
Confidence 99999999994 333333 7999999999999999999999999999999987 677 9988765 56677
Q ss_pred ccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEc
Q 003804 472 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 550 (794)
Q Consensus 472 ~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~ 550 (794)
++.++ .|+++++|+|.++.|.++|.+||++|++|||+|+|.++ +|||++|+||||+||||+++||+++| +++++++
T Consensus 401 ~~~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~--~vev~~s 477 (693)
T PRK00007 401 SMEFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREF--KVEANVG 477 (693)
T ss_pred CCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHh--CCeeEec
Confidence 88775 99999999999999999999999999999999999997 89999999999999999999999999 9999999
Q ss_pred CcEEEEEeecccccceeE----eecCCCceeEEEEEEeeCCcc----chhhhccCCCCCCCCccchHHhHHHHHHHHHHH
Q 003804 551 DPVVSFRETVLEKSCRTV----MSKSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWA 622 (794)
Q Consensus 551 ~p~V~yrETi~~~~~~~~----~~~~~~~~~~v~~~~ePl~~~----~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a 622 (794)
+|+|+|||||+++++... +..+.++|+.++++++|++.+ |.+.+.+|.+ .++++++|++||++|
T Consensus 478 ~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~--------~~~~~~av~~G~~~a 549 (693)
T PRK00007 478 KPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVI--------PKEYIPAVDKGIQEA 549 (693)
T ss_pred CCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcC--------cHHHHHHHHHHHHHH
Confidence 999999999998865422 233456789999999999753 5566666664 345667999999999
Q ss_pred HHcCCcCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhh
Q 003804 623 SKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQ 701 (794)
Q Consensus 623 ~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~ 701 (794)
+++|||||+||+||+|+|+|+++|. |+++ .+|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++
T Consensus 550 ~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~---~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~ 626 (693)
T PRK00007 550 MESGVLAGYPVVDVKVTLFDGSYHDVDSSE---MAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNS 626 (693)
T ss_pred HhcCCcCCCceeeEEEEEEecccCCCCCcH---HHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHh
Confidence 9999999999999999999999996 6544 35779999999999999999999999999999999999999999999
Q ss_pred cccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHHHH
Q 003804 702 KRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLD 773 (794)
Q Consensus 702 rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~~~ 773 (794)
|||+|.++++.+ +.+.|+|.+|++||+||+++||++|+|+|+|+|+|+||++||++. +++++++
T Consensus 627 RRg~i~~~~~~~--~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~------~~~~~~~ 690 (693)
T PRK00007 627 RRGQIEGMEDRG--GAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNV------AEEIIKK 690 (693)
T ss_pred CCCeEecccccC--CcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHH------HHHHHHH
Confidence 999999887654 478999999999999999999999999999999999999999875 7777654
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=4e-110 Score=990.47 Aligned_cols=654 Identities=27% Similarity=0.381 Sum_probs=547.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc---cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~---~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (794)
+..||+| +||+|||||||+++|++.+|.+.+. ..| .+++|+.++|++||+|++++..++.|+
T Consensus 9 ~irni~i---iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g-~~~~D~~~~e~~rgiti~~~~~~~~~~----------- 73 (689)
T TIGR00484 9 RFRNIGI---SAHIDAGKTTTTERILFYTGRIHKIGEVHDG-AATMDWMEQEKERGITITSAATTVFWK----------- 73 (689)
T ss_pred cccEEEE---ECCCCCCHHHHHHHHHHhCCCccccccccCC-ccccCCCHHHHhcCCCEecceEEEEEC-----------
Confidence 3569999 9999999999999999999988652 122 478999999999999999999999996
Q ss_pred ccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCH
Q 003804 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~ 163 (794)
+++++|||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++...++|+++|+||||+. +++.
T Consensus 74 -----~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~----~~~~ 144 (689)
T TIGR00484 74 -----GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT----GANF 144 (689)
T ss_pred -----CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC----CCCH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 7775
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccC
Q 003804 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (794)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~ 243 (794)
++..+.+++ .+.. .+...++|++ +..++.-. +|+..+..+ +|+
T Consensus 145 ~~~~~~i~~-------~l~~-----------~~~~~~ipis-~~~~~~~~-------------id~~~~~~~-----~~~ 187 (689)
T TIGR00484 145 LRVVNQIKQ-------RLGA-----------NAVPIQLPIG-AEDNFIGV-------------IDLVEMKAY-----FFN 187 (689)
T ss_pred HHHHHHHHH-------HhCC-----------CceeEEeccc-cCCCceEE-------------EECccceEE-----ecc
Confidence 544443333 2211 1112245553 22222100 334333222 333
Q ss_pred CCCC-ceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc-
Q 003804 244 PATR-KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA- 320 (794)
Q Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 320 (794)
...+ .+.. ....+++.+++.+++++|+|++++.|+++|++||++ .+++.+++. +++.++++ .+++|+
T Consensus 188 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~~~~~~l~---~~l~~~~~~~~~~PV~ 257 (689)
T TIGR00484 188 GDKGTKAIE-----KEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEG--EELTIEEIK---NAIRKGVLNCEFFPVL 257 (689)
T ss_pred cCCCceeee-----ccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHhcCCEEEEE
Confidence 3221 1221 234567888999999999999999999999999996 788888886 56666655 578886
Q ss_pred ---------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEE
Q 003804 321 ---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVF 391 (794)
Q Consensus 321 ---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~ 391 (794)
+++|||+|++++|+|.+++...... .+......+.|++++|++|+|||+.++++.|+ ++|+|||
T Consensus 258 ~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~------~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-i~~~RV~ 330 (689)
T TIGR00484 258 CGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGID------PDTEKEIERKASDDEPFSALAFKVATDPFVGQ-LTFVRVY 330 (689)
T ss_pred eccccCCccHHHHHHHHHHHCCCchhcccccccC------CCCCceeeecCCCCCceEEEEEEeeecCCCCe-EEEEEEE
Confidence 5999999999999998764432111 01112345788999999999999999999886 9999999
Q ss_pred eeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccc
Q 003804 392 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPI 470 (794)
Q Consensus 392 sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~ 470 (794)
||+|++||.|++ .+.+++ +++.+|+.++|.+..+++++.|||||++.|++++ .+| ||++.+. +..+
T Consensus 331 sGtL~~g~~v~~----~~~~~~-----~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~~ 397 (689)
T TIGR00484 331 SGVLKSGSYVKN----SRKNKK-----ERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT--TTGDTLCDPKI--DVIL 397 (689)
T ss_pred EeEEcCCCEEEe----CCCCce-----EEecceEEeecCCcccccccCCCCEEEEcCCCCC--CCCCEEeCCCC--cccc
Confidence 999999999994 333333 6999999999999999999999999999999987 566 9988765 5667
Q ss_pred cccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEE
Q 003804 471 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIK 549 (794)
Q Consensus 471 ~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~ 549 (794)
+++.++ +|+++++|+|.++.|.++|.+||++|++|||+|+|.++ +|||++|+||||+||||+++||+++| ++++++
T Consensus 398 ~~~~~~-~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~--~vev~~ 474 (689)
T TIGR00484 398 ERMEFP-EPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREF--KVEANV 474 (689)
T ss_pred CCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHh--CCeeEe
Confidence 778775 99999999999999999999999999999999999997 89999999999999999999999999 999999
Q ss_pred cCcEEEEEeecccccceeE----eecCCCceeEEEEEEeeCCcc---chhhhccCCCCCCCCccchHHhHHHHHHHHHHH
Q 003804 550 SDPVVSFRETVLEKSCRTV----MSKSPNKHNRLYMEARPLEEG---LAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWA 622 (794)
Q Consensus 550 ~~p~V~yrETi~~~~~~~~----~~~~~~~~~~v~~~~ePl~~~---~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a 622 (794)
++|+|+|||||.+.++... +..+.++|++|+++++|++.+ |.+.+++|.+|. +++++|++||+||
T Consensus 475 ~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~~~~~i~~g~~~~--------~~~~av~~g~~~a 546 (689)
T TIGR00484 475 GAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYEFVNEIKGGVIPR--------EYIPAVDKGLQEA 546 (689)
T ss_pred cCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcEEEEeccCCcCCH--------HHHHHHHHHHHHH
Confidence 9999999999998866432 223455789999999999754 667777887653 4556899999999
Q ss_pred HHcCCcCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhh
Q 003804 623 SKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQ 701 (794)
Q Consensus 623 ~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~ 701 (794)
+++|||||+||+||+|+|+|+++|. |+. ..+|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++
T Consensus 547 ~~~GpL~g~pv~~v~v~l~~~~~~~~~s~---~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~ 623 (689)
T TIGR00484 547 MESGPLAGYPVVDIKATLFDGSYHDVDSS---EMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSS 623 (689)
T ss_pred HhcCCcCCCceeeEEEEEEEeecCCCCCC---HHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHh
Confidence 9999999999999999999999996 544 345778999999999999999999999999999999999999999999
Q ss_pred cccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHHHH
Q 003804 702 KRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLD 773 (794)
Q Consensus 702 rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~~~ 773 (794)
|||+|.+++..+ +.+.|+|++|++|||||+++||++|+|+|+|+|+|+||++||+++ +++++++
T Consensus 624 rrg~i~~~~~~~--~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~------~~~ii~~ 687 (689)
T TIGR00484 624 RRGIIEGMEARG--NVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSV------ANEIIEK 687 (689)
T ss_pred cCCeEecccccC--CcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHH------HHHHHHh
Confidence 999999887654 479999999999999999999999999999999999999999886 7777654
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=4.7e-107 Score=966.85 Aligned_cols=656 Identities=28% Similarity=0.393 Sum_probs=545.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc--CCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~--~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
...||+| +||.|||||||+++|++.+|.+.+.. .+..+.+|+.+.|++||+|+.++..++.|.
T Consensus 7 ~irni~i---iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~------------ 71 (687)
T PRK13351 7 QIRNIGI---LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD------------ 71 (687)
T ss_pred cccEEEE---ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC------------
Confidence 3569999 99999999999999999999876521 112468999999999999999999999995
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHH
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~ 164 (794)
++.++|||||||.||..++..+++.+|++|+|+|+.+|++.++..+|+++...++|+++|+||+|+. +++..
T Consensus 72 ----~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~----~~~~~ 143 (687)
T PRK13351 72 ----NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV----GADLF 143 (687)
T ss_pred ----CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC----CCCHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 88744
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCC
Q 003804 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~ 244 (794)
+. +++++..+... + ...+.|... ++.+.|| +|+..+..+.|+.. .
T Consensus 144 ~~-------~~~i~~~l~~~---~--~~~~~P~~~----~~~~~g~----------------id~~~~~~~~~~~~---~ 188 (687)
T PRK13351 144 KV-------LEDIEERFGKR---P--LPLQLPIGS----EDGFEGV----------------VDLITEPELHFSEG---D 188 (687)
T ss_pred HH-------HHHHHHHHCCC---e--EEEEecccc----CCceEEE----------------EECccceEEecccC---C
Confidence 44 44444443210 0 001223322 2234444 23334444566432 1
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc---
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA--- 320 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 320 (794)
.+..+... +.+..+.+++++++++|++.+++.|++++++||++ .+++.++++. ++++.+. ++|+|+
T Consensus 189 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~--~~l~~~~l~~---~~~~~~~~~~~~PV~~g 258 (687)
T PRK13351 189 GGSTVEEG-----PIPEELLEEVEEAREKLIEALAEFDDELLELYLEG--EELSAEQLRA---PLREGTRSGHLVPVLFG 258 (687)
T ss_pred CCCceEEc-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHHH---HHHHHHHhCCEEEEEec
Confidence 12233332 23457889999999999999999999999999985 8999999873 4444433 689997
Q ss_pred -------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEee
Q 003804 321 -------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSG 393 (794)
Q Consensus 321 -------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG 393 (794)
++.|||+|++++|+|.+++..+... . +. ....+.|++++|++|+|||+.++++.|. ++|+|||||
T Consensus 259 SA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~----~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sG 330 (687)
T PRK13351 259 SALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--D----NG-KPVKVDPDPEKPLLALVFKVQYDPYAGK-LTYLRVYSG 330 (687)
T ss_pred ccCcCccHHHHHHHHHHHCCChhhcccccccC--C----CC-CceeecCCCCCCeEEEEEEeeecCCCce-EEEEEEeEE
Confidence 5899999999999998765543322 0 00 1223678999999999999999999887 999999999
Q ss_pred eecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccc
Q 003804 394 KVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRA 472 (794)
Q Consensus 394 ~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 472 (794)
+|++||.|++.+ ++++ +++++|+.++|.+..+++++.||||+++.|++++ .+| ||++... ...+++
T Consensus 331 tl~~g~~v~~~~----~~~~-----~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~~~~ 397 (687)
T PRK13351 331 TLRAGSQLYNGT----GGKR-----EKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL--ETGDTLHDSAD--PVLLEL 397 (687)
T ss_pred EEcCCCEEEeCC----CCCc-----eEeeeEEEEccCCeeECCccCCCCEEEEECcccC--ccCCEEeCCCC--ccccCC
Confidence 999999999754 2332 7999999999999999999999999999999987 566 9988765 556667
Q ss_pred cccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcC
Q 003804 473 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 551 (794)
Q Consensus 473 ~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~ 551 (794)
+.++ +|+++++|+|.++.|.++|.+||++|.+|||+|+|+.+ +|||++|+||||||||++++||+++| ++++++++
T Consensus 398 ~~~~-~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~--~vev~~~~ 474 (687)
T PRK13351 398 LTFP-EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREF--KLEVNTGK 474 (687)
T ss_pred CCCC-CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CCceEecC
Confidence 7664 99999999999999999999999999999999999997 89999999999999999999999999 99999999
Q ss_pred cEEEEEeeccccccee----EeecCCCceeEEEEEEeeCCcc----chhhhccCCCCCCCCccchHHhHHHHHHHHHHHH
Q 003804 552 PVVSFRETVLEKSCRT----VMSKSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWAS 623 (794)
Q Consensus 552 p~V~yrETi~~~~~~~----~~~~~~~~~~~v~~~~ePl~~~----~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~ 623 (794)
|+|+|||||++.++.. ...+..+++++++++++|++.+ +.+.+.+|. +..+++++|++||++|+
T Consensus 475 p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~--------~~~~~~~ai~~g~~~a~ 546 (687)
T PRK13351 475 PQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGA--------IPEELIPAVEKGIREAL 546 (687)
T ss_pred CeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCc--------CCHHHHHHHHHHHHHHH
Confidence 9999999999876532 2233456789999999999854 444455554 45577789999999999
Q ss_pred HcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcc
Q 003804 624 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKR 703 (794)
Q Consensus 624 ~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rr 703 (794)
++|||||+||+||+|+|+|+++|.+.+ ..++|++|+++||++|+++|+|+||||||+|||++|++++|+|+++|++||
T Consensus 547 ~~GpL~~~pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rr 624 (687)
T PRK13351 547 ASGPLAGYPVTDLRVTVLDGKYHPVDS--SESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRR 624 (687)
T ss_pred hcCCCCCCceeeEEEEEEEecCCCCCC--CHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCC
Confidence 999999999999999999999996322 357899999999999999999999999999999999999999999999999
Q ss_pred cceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHH
Q 003804 704 GHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLV 771 (794)
Q Consensus 704 g~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~ 771 (794)
|+|++++..+++ .+.|+|.+|++||+||+++||++|+|+|+|+|+|+||++||+++ +++++
T Consensus 625 g~i~~~~~~~~~-~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~------~~~~~ 685 (687)
T PRK13351 625 GRIEGTEPRGDG-EVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAV------QKKVG 685 (687)
T ss_pred cEEeceecCCCc-EEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHH------HHHHh
Confidence 999998876542 33499999999999999999999999999999999999999876 66664
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.6e-102 Score=926.79 Aligned_cols=638 Identities=29% Similarity=0.423 Sum_probs=531.3
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccc--cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEE
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINL 94 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~--~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inl 94 (794)
+||+|||||||+++|++.+|.+++. ..+..+++|+.+.|++||+|+.++..++.|. ++.++|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----------------GHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----------------CEEEEE
Confidence 5999999999999999999998762 0112479999999999999999999999996 899999
Q ss_pred EcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHH
Q 003804 95 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 174 (794)
Q Consensus 95 IDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~ 174 (794)
||||||.+|..++..+++.+|++|+|||+.+|++.++..+|+.+...++|.++|+||+|+. +.+..++.+.+++.+
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~----~~~~~~~~~~l~~~l 140 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRA----GADFFRVLAQLQEKL 140 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 666444444443332
Q ss_pred HHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCCCceeecCC
Q 003804 175 ENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWTSRNT 254 (794)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~ 254 (794)
.. ... ....|.. .++++.||.. ......+ +|+ +++.+...+
T Consensus 141 ~~-~~~-----------~~~~p~~----~~~~~~~~id----------------~~~~~~~-----~~~-~~~~~~~~~- 181 (668)
T PRK12740 141 GA-PVV-----------PLQLPIG----EGDDFTGVVD----------------LLSMKAY-----RYD-EGGPSEEIE- 181 (668)
T ss_pred CC-Cce-----------eEEeccc----CCCCceEEEE----------------CccceEE-----Eec-CCCeeEEec-
Confidence 21 000 0112322 1334445532 2111112 333 233333222
Q ss_pred CCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc----------hHH
Q 003804 255 GSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA----------SSA 323 (794)
Q Consensus 255 ~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~----------~~~ 323 (794)
.++.+.+++.+++++|++.+++.|++++++||++ ++++.++++. ++++.+. ++|+|+ ++.
T Consensus 182 ----~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~--~~l~~~~~~~---~~~~~~~~~~~~Pv~~gSA~~~~Gv~~ 252 (668)
T PRK12740 182 ----IPAELLDRAEEAREELLEALAEFDDELMEKYLEG--EELSEEEIKA---GLRKATLAGEIVPVFCGSALKNKGVQR 252 (668)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC--CCCCHHHHHH---HHHHHHHcCCEEEEEeccccCCccHHH
Confidence 2356778899999999999999999999999997 7888888873 4444433 689998 899
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEE
Q 003804 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (794)
Q Consensus 324 LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v 403 (794)
|||+|++++|+|.++++.. +. .........|++++|++|+|||++++++.|. ++|+|||||+|++||.|++
T Consensus 253 LLd~i~~~lPsp~~~~~~~------~~--~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~-i~~~RV~sG~L~~g~~v~~ 323 (668)
T PRK12740 253 LLDAVVDYLPSPLEVPPVD------GE--DGEEGAELAPDPDGPLVALVFKTMDDPFVGK-LSLVRVYSGTLKKGDTLYN 323 (668)
T ss_pred HHHHHHHHCCChhhccccc------CC--CCccccccccCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEEe
Confidence 9999999999998765421 10 1112345678999999999999999998886 9999999999999999997
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEE
Q 003804 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 482 (794)
Q Consensus 404 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 482 (794)
.+ ++++ +++.+|+.++|++.++++++.|||||++.|++.+ .+| ||++... ...++++.++ +|+++
T Consensus 324 ~~----~~~~-----~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~~--~~~~~~~~~~-~P~~~ 389 (668)
T PRK12740 324 SG----TGKK-----ERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA--ATGDTLCDKGD--PILLEPMEFP-EPVIS 389 (668)
T ss_pred CC----CCCc-----EEecceeeecCCCccccCccCCCCEEEEeccCcc--CCCCEEeCCCC--ccccCCCCCC-CcceE
Confidence 54 2222 7999999999999999999999999999999875 567 9987665 5677788886 99999
Q ss_pred EEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeecc
Q 003804 483 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 561 (794)
Q Consensus 483 ~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi~ 561 (794)
++|+|.++.|.++|.+||++|+++||+|+|..+ ++||++|+||||+|||++++||+++| ++++.+++|+|+|||||.
T Consensus 390 ~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~--~~~v~~~~p~V~yrEti~ 467 (668)
T PRK12740 390 LAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREY--GVEVETGPPQVPYRETIR 467 (668)
T ss_pred EEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CceeEecCCeeEEeeccC
Confidence 999999999999999999999999999999987 89999999999999999999999999 999999999999999999
Q ss_pred cccceeEe----ecCCCceeEEEEEEeeCCcc----chhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCe
Q 003804 562 EKSCRTVM----SKSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENM 633 (794)
Q Consensus 562 ~~~~~~~~----~~~~~~~~~v~~~~ePl~~~----~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv 633 (794)
++++.... .+..+++++|+++++|++.+ |.+.+.+|. +.++++++|++||++|+++|||||+||
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~--------~~~~~~~ai~~g~~~a~~~Gpl~g~p~ 539 (668)
T PRK12740 468 KKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGA--------VPRQYIPAVEKGVREALEKGVLAGYPV 539 (668)
T ss_pred CCccccceeccccCCCCceEEEEEEEEECCCCCceEEeecccCCC--------ccHHHHHHHHHHHHHHHhcCCcCCCce
Confidence 87654322 22345678999999999864 445555555 445667799999999999999999999
Q ss_pred eeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeecc
Q 003804 634 RGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 712 (794)
Q Consensus 634 ~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~ 712 (794)
+||+|+|+|+.+|. |+ ...+|+.|+++||++|+++|+|+||||||+|||++|++++|+|+++|++|||+|.+++..
T Consensus 540 ~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~ 616 (668)
T PRK12740 540 VDVKVTLTDGSYHSVDS---SEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESR 616 (668)
T ss_pred eeEEEEEEecccccCCC---CHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccC
Confidence 99999999999995 43 345688999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCC
Q 003804 713 PGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 760 (794)
Q Consensus 713 ~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~ 760 (794)
++ .+.|+|++|++||+||+++||++|+|+|+|+++|+||+++|+++
T Consensus 617 ~~--~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~ 662 (668)
T PRK12740 617 GG--GDVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNV 662 (668)
T ss_pred CC--CEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCCHHH
Confidence 54 38999999999999999999999999999999999999999875
No 15
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-95 Score=755.00 Aligned_cols=647 Identities=26% Similarity=0.362 Sum_probs=518.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCc----eeecCChhhHhhhCcccccceEEEEeecchhhhhccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (794)
+..||+| ++|+|+||||.++++||.+|.+.. .|. .+++|++..||+|||||.++.+.|.|+
T Consensus 36 kirnigi---iahidagktttterily~ag~~~s--~g~vddgdtvtdfla~erergitiqsaav~fdwk---------- 100 (753)
T KOG0464|consen 36 KIRNIGI---IAHIDAGKTTTTERILYLAGAIHS--AGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK---------- 100 (753)
T ss_pred hhhccee---EEEecCCCchhHHHHHHHhhhhhc--ccccCCCchHHHHHHHHHhcCceeeeeeeecccc----------
Confidence 3458888 999999999999999999999987 443 468999999999999999999999996
Q ss_pred cccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCC
Q 003804 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (794)
Q Consensus 83 ~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~ 162 (794)
+|+||+||||||+||.-|+++++|+.||+|.|+|++.|+++||.++|+|+.+.++|.++|+||||+. .++
T Consensus 101 ------g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~----~an 170 (753)
T KOG0464|consen 101 ------GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL----AAN 170 (753)
T ss_pred ------cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh----hhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 887
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhccccc
Q 003804 163 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (794)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~ 242 (794)
++. .++.+...+. ..|.+-++|++.+.. |.+ .| +|+..-.+.+|+.+.-
T Consensus 171 fe~-------avdsi~ekl~-----------ak~l~l~lpi~eak~--------fnk----g~-ldil~ke~l~~ncnsn 219 (753)
T KOG0464|consen 171 FEN-------AVDSIEEKLG-----------AKALKLQLPIGEAKG--------FNK----GF-LDILHKEKLLGNCNSN 219 (753)
T ss_pred hhh-------HHHHHHHHhC-----------CceEEEEeccccccc--------ccc----hH-HHHHHHhhccCCCCCC
Confidence 444 4444444443 134445677776621 000 00 4444444566754432
Q ss_pred CCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCc---CCHHHHHHhHHHHHHH-HHhccc
Q 003804 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVT---MKSEEKELMGKALMKR-VMQTWL 318 (794)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~---l~~~el~~~~~~l~~~-i~~~~~ 318 (794)
|+ +.|...|. ...-.++..+...+....|.+.+++.|++.-.++|+++... ++.++++ .++++- +.++..
T Consensus 220 dg--kd~e~~pl-le~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elk---sai~~lt~aq~a~ 293 (753)
T KOG0464|consen 220 DG--KDFENKPL-LEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELK---SAIHELTCAQKAA 293 (753)
T ss_pred cc--ccccCCcc-cccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHH---HHHHHHhhhhhhc
Confidence 32 23544431 11123456667778888999999999999999999987543 5677775 455543 335677
Q ss_pred cc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEE
Q 003804 319 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFG 388 (794)
Q Consensus 319 P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~ 388 (794)
|+ +|+|||++.-|+|||.+++ |.+-..|. ..++|+.||+.+++.+|+ ++|+
T Consensus 294 ~i~cgsaiknkgiqplldavtmylpspeern-yeflqwyk-----------------ddlcalafkvlhdkqrg~-l~fm 354 (753)
T KOG0464|consen 294 PILCGSAIKNKGIQPLLDAVTMYLPSPEERN-YEFLQWYK-----------------DDLCALAFKVLHDKQRGP-LSFM 354 (753)
T ss_pred ceehhhhhcccCccchhhhhhhccCChhhcc-hHHHhhhh-----------------hhHHHHhhhhhcccccCc-eeEE
Confidence 75 7999999999999998764 44444454 237899999999999999 9999
Q ss_pred EEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCC--
Q 003804 389 RVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV-- 465 (794)
Q Consensus 389 RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~-- 465 (794)
|||||+++++..+++...+ -++++.+++++.+++..+|+++.||+|....||+.+ .|| |+..++.+
T Consensus 355 riysgsi~~~~ai~nin~~---------~se~~~kl~~pfade~~~i~qlsagnialt~glk~t--atgdtivaskasa~ 423 (753)
T KOG0464|consen 355 RIYSGSIHNNLAIFNINGM---------CSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT--ATGDTIVASKASAE 423 (753)
T ss_pred EEecccccCceeeeecccc---------cccchHhhhccchhhhhhhhhcccccEEEEecceee--ccCCeEEecchhHH
Confidence 9999999999999954322 237999999999999999999999999999999987 567 77654321
Q ss_pred --------------------CcccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEe
Q 003804 466 --------------------DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAG 524 (794)
Q Consensus 466 --------------------~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g 524 (794)
....|.++..| .|||++.|||.+....+.+..||+.|.+||||++++.+ ++||+++.|
T Consensus 424 aa~qk~~~egekk~~q~~daerll~agie~p-d~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~ 502 (753)
T KOG0464|consen 424 AAAQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCG 502 (753)
T ss_pred HHHHHhhccchhhccCCccccceeeecccCC-CceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEec
Confidence 01235566765 99999999999999999999999999999999999998 999999999
Q ss_pred cchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeecccccceeEee---cCCCce-eEEEEEEeeCCcc-----------
Q 003804 525 AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMS---KSPNKH-NRLYMEARPLEEG----------- 589 (794)
Q Consensus 525 ~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi~~~~~~~~~~---~~~~~~-~~v~~~~ePl~~~----------- 589 (794)
|||||+|++.+|++++| |+++-+|+.+|+|||+|.+....+... -+..+| --|.++++|.+..
T Consensus 503 ~gelhie~ihdrikrey--~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~kkiefe 580 (753)
T KOG0464|consen 503 MGELHIEAIHDRIKREY--GLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKIEFE 580 (753)
T ss_pred cchhhHHHHHHHHHhhc--CchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccceeEEee
Confidence 99999999999999999 999999999999999998865432111 112222 1233333333221
Q ss_pred chhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHH
Q 003804 590 LAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 669 (794)
Q Consensus 590 ~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 669 (794)
..+.+..| .+.--+++|+.|+..||.+|||+|+|+++|+++|+.+.+|... ..+..+.+++.+|+.+|+
T Consensus 581 ~~es~n~~---------~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk--~n~alisac~qkcvqeal 649 (753)
T KOG0464|consen 581 LAESANEG---------LLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGK--INPALISACAQKCVQEAL 649 (753)
T ss_pred ccccccch---------hhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCc--CCHHHHHHHHHHHHHHHH
Confidence 11111111 2222257999999999999999999999999999999999532 223456679999999999
Q ss_pred HhcCCceecCeEEEEEEec-cCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeee
Q 003804 670 LTAKPRLLEPVYLVEIQAP-EQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 748 (794)
Q Consensus 670 ~~a~~~llEPi~~~eI~~p-~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~ 748 (794)
++|.-.++||+|+++|.+- ++++..|+.+|.+|||++.+.+..+.+....|.|.+|++|..||++.||.+|+|-|.|.+
T Consensus 650 kkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~al 729 (753)
T KOG0464|consen 650 KKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFAL 729 (753)
T ss_pred hhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEE
Confidence 9999999999999999985 489999999999999999988877766667899999999999999999999999999999
Q ss_pred EeccccccCCC
Q 003804 749 VFDHWDMMSSD 759 (794)
Q Consensus 749 ~f~~y~~~~~~ 759 (794)
+|++|+.|.+.
T Consensus 730 e~~~yqamn~~ 740 (753)
T KOG0464|consen 730 EFRGYQAMNEH 740 (753)
T ss_pred EecchhhcChH
Confidence 99999999765
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.1e-77 Score=693.10 Aligned_cols=463 Identities=25% Similarity=0.451 Sum_probs=396.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.||+| +||+|||||||+++||+.+|.+.....-..+.+|+.++|++||+|+.++..++.|.
T Consensus 2 RNIaI---iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~---------------- 62 (594)
T TIGR01394 2 RNIAI---IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN---------------- 62 (594)
T ss_pred cEEEE---EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------
Confidence 47899 99999999999999999999887632223469999999999999999999999996
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHH
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~~ 168 (794)
+++|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+.+...++|+|+|+||||+. +++++++.+
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~----~a~~~~v~~ 138 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----SARPDEVVD 138 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCC----CcCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 777666666
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCCCc
Q 003804 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~~~ 248 (794)
.+.+.+..+.. .++ . ...++.++|+..||++.-. +.
T Consensus 139 ei~~l~~~~g~-----~~e-----~---l~~pvl~~SA~~g~~~~~~---------------------------~~---- 174 (594)
T TIGR01394 139 EVFDLFAELGA-----DDE-----Q---LDFPIVYASGRAGWASLDL---------------------------DD---- 174 (594)
T ss_pred HHHHHHHhhcc-----ccc-----c---ccCcEEechhhcCcccccC---------------------------cc----
Confidence 66555543221 000 0 0124677888777753100 00
Q ss_pred eeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHHHH
Q 003804 249 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 328 (794)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 328 (794)
. .+ .+.+||+++
T Consensus 175 ---~------------------------------~~-----------------------------------gi~~Lld~I 186 (594)
T TIGR01394 175 ---P------------------------------SD-----------------------------------NMAPLFDAI 186 (594)
T ss_pred ---c------------------------------cc-----------------------------------CHHHHHHHH
Confidence 0 00 024689999
Q ss_pred HhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCC
Q 003804 329 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 408 (794)
Q Consensus 329 ~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~ 408 (794)
++++|+|. .++++||+++|||++.+++.|+ ++++||+||+|++||.|++...+
T Consensus 187 v~~lP~P~-------------------------~~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~~~~- 239 (594)
T TIGR01394 187 VRHVPAPK-------------------------GDLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALMKRD- 239 (594)
T ss_pred HHhCCCCC-------------------------CCCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEecCC-
Confidence 99999993 1356899999999999999998 99999999999999999976421
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEe
Q 003804 409 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 487 (794)
Q Consensus 409 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep 487 (794)
+. ...++|++|+.++|.++.++++|.|||||++.|++++ .+| |||+... +.+++++.++ +|+++++++|
T Consensus 240 --~~---~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i--~~Gdtl~~~~~--~~~l~~~~~~-~P~~~~~~~~ 309 (594)
T TIGR01394 240 --GT---IENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI--NIGETIADPEV--PEALPTITVD-EPTLSMTFSV 309 (594)
T ss_pred --Cc---eeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc--CCCCEEeCCCc--cccCCCCCCC-CCeEEEEEEe
Confidence 11 2247999999999999999999999999999999987 678 9999877 6778888876 9999999999
Q ss_pred CCC---CCHhH------HHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEE
Q 003804 488 KVA---SDLPK------LVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 557 (794)
Q Consensus 488 ~~~---~d~~k------l~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yr 557 (794)
.+. ++..| |.++|.++.++||+|+|..+ +++|++|+|||||||+|++++|+++ |+++.+++|+|+||
T Consensus 310 ~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yr 386 (594)
T TIGR01394 310 NDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE---GFELQVGRPQVIYK 386 (594)
T ss_pred cCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc---CceEEEeCCEEEEE
Confidence 755 44444 99999999999999999987 8999999999999999999999998 99999999999999
Q ss_pred eecccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEE
Q 003804 558 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRGIC 637 (794)
Q Consensus 558 ETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~ 637 (794)
| |. |
T Consensus 387 e-i~-----------------------------------g---------------------------------------- 390 (594)
T TIGR01394 387 E-ID-----------------------------------G---------------------------------------- 390 (594)
T ss_pred e-CC-----------------------------------C----------------------------------------
Confidence 9 41 0
Q ss_pred EEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCc
Q 003804 638 FEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPL 717 (794)
Q Consensus 638 v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~ 717 (794)
++|||||+++|.||++|+|+|+++|++|||+|+++++.++ ++
T Consensus 391 -------------------------------------~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~-~~ 432 (594)
T TIGR01394 391 -------------------------------------KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGN-GR 432 (594)
T ss_pred -------------------------------------eEECCEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCC-CE
Confidence 2899999999999999999999999999999999998543 58
Q ss_pred EEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCC
Q 003804 718 YNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 760 (794)
Q Consensus 718 ~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~ 760 (794)
+.|+|.+|+++|+||.++|||+|+|+|+|++.|+||+++|++.
T Consensus 433 ~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i 475 (594)
T TIGR01394 433 TRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEI 475 (594)
T ss_pred EEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcC
Confidence 9999999999999999999999999999999999999999875
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1e-75 Score=675.09 Aligned_cols=465 Identities=25% Similarity=0.422 Sum_probs=396.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
...||+| +||+|||||||+++|++.+|.+.+...-..+.+|+.++|++||+|+.+...++.|.
T Consensus 4 ~iRnIaI---iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-------------- 66 (607)
T PRK10218 4 KLRNIAI---IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-------------- 66 (607)
T ss_pred CceEEEE---ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC--------------
Confidence 3468999 99999999999999999999887632222489999999999999999999999985
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
+++||+||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+.+...++|.++|+||+|+. +++++++
T Consensus 67 --~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~----~a~~~~v 140 (607)
T PRK10218 67 --DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP----GARPDWV 140 (607)
T ss_pred --CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC----CCchhHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 8887777
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~ 246 (794)
.+.+.+.+..+... + .....+|.++|+..||+.. +...
T Consensus 141 l~ei~~l~~~l~~~-----~--------~~~~~PVi~~SA~~G~~~~--------------~~~~--------------- 178 (607)
T PRK10218 141 VDQVFDLFVNLDAT-----D--------EQLDFPIVYASALNGIAGL--------------DHED--------------- 178 (607)
T ss_pred HHHHHHHHhccCcc-----c--------cccCCCEEEeEhhcCcccC--------------Cccc---------------
Confidence 66666655432111 0 0011257788888887420 0000
Q ss_pred CceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHH
Q 003804 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (794)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (794)
. .+ .+.+|||
T Consensus 179 --------------------------------------~----~~----------------------------~i~~Lld 188 (607)
T PRK10218 179 --------------------------------------M----AE----------------------------DMTPLYQ 188 (607)
T ss_pred --------------------------------------c----cc----------------------------chHHHHH
Confidence 0 00 0246899
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCC
Q 003804 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (794)
Q Consensus 327 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 406 (794)
+|++++|+|. +++++||.++|||++.+++.|+ ++++||+||+|++||.|++...
T Consensus 189 ~Ii~~iP~P~-------------------------~~~~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v~~~~~ 242 (607)
T PRK10218 189 AIVDHVPAPD-------------------------VDLDGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQVTIIDS 242 (607)
T ss_pred HHHHhCCCCC-------------------------CCCCCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEEEEecC
Confidence 9999999993 1456899999999999999998 9999999999999999997532
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEE
Q 003804 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAV 485 (794)
Q Consensus 407 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aI 485 (794)
+ ++ ...+||++||.++|.++.++++|.|||||++.|++++ .+| |||+... +.+++++.++ +|++++++
T Consensus 243 ~---~~---~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GdTl~~~~~--~~~l~~~~~~-~P~~~~~~ 311 (607)
T PRK10218 243 E---GK---TRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL--NISDTVCDTQN--VEALPALSVD-EPTVSMFF 311 (607)
T ss_pred C---Cc---EeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc--ccCcEEecCCC--cccCCCCCCC-CCeEEEEE
Confidence 1 21 2237999999999999999999999999999999997 678 9998876 6677788876 99999999
Q ss_pred EeCC---CCCHhHHHH---HHHHHHh---cCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEE
Q 003804 486 QCKV---ASDLPKLVE---GLKRLAK---SDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVS 555 (794)
Q Consensus 486 ep~~---~~d~~kl~~---aL~~L~~---eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~ 555 (794)
.|.+ .+|+.|+.. +|.+|.+ +||+|+|..+ +++|++|+|+|||||+|++++|+++ |+++.+++|+|+
T Consensus 312 ~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~ 388 (607)
T PRK10218 312 CVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE---GFELAVSRPKVI 388 (607)
T ss_pred EeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC---CceEEEeCCEEE
Confidence 9999 889999865 5666666 9999999987 8999999999999999999999998 999999999999
Q ss_pred EEeecccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeee
Q 003804 556 FRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRG 635 (794)
Q Consensus 556 yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~ 635 (794)
|||| + |.
T Consensus 389 yret--~----------------------------------g~------------------------------------- 395 (607)
T PRK10218 389 FREI--D----------------------------------GR------------------------------------- 395 (607)
T ss_pred EEEE--C----------------------------------CE-------------------------------------
Confidence 9997 0 10
Q ss_pred EEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCC
Q 003804 636 ICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGT 715 (794)
Q Consensus 636 v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~ 715 (794)
.||||++++|.||++|+|+|+++|++|||+++++++.++
T Consensus 396 ----------------------------------------klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~- 434 (607)
T PRK10218 396 ----------------------------------------KQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGK- 434 (607)
T ss_pred ----------------------------------------EeCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECCC-
Confidence 169999999999999999999999999999999997543
Q ss_pred CcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccC-CCC
Q 003804 716 PLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS-SDP 760 (794)
Q Consensus 716 ~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~-~~~ 760 (794)
+++.|+|.+|+++|+||.++|+|+|+|+|+|++.|+||+++| ++.
T Consensus 435 ~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~ 480 (607)
T PRK10218 435 GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480 (607)
T ss_pred CEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCC
Confidence 589999999999999999999999999999999999999999 653
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.5e-73 Score=661.27 Aligned_cols=464 Identities=26% Similarity=0.409 Sum_probs=383.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
..|++| +||+|||||||+++|++.+|.+++...+ .+++|+.++|++||+|++++.+++.|.. .++
T Consensus 7 iRNi~I---iGhvd~GKTTL~~rLl~~tg~i~~~~~~-~~~lD~~~~ErerGiTi~~~~v~~~~~~-----------~dg 71 (600)
T PRK05433 7 IRNFSI---IAHIDHGKSTLADRLIELTGTLSEREMK-AQVLDSMDLERERGITIKAQAVRLNYKA-----------KDG 71 (600)
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHHhcCCCcccccc-cccccCchHHhhcCCcccccEEEEEEEc-----------cCC
Confidence 458999 9999999999999999999998874333 5799999999999999999999999851 134
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHH
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~ 167 (794)
+++.+||||||||.||..++.++++.+|++|+|||+++|++.||...|..+...++|.++|+||+|+. +++.+++.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~----~a~~~~v~ 147 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLP----AADPERVK 147 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC----cccHHHHH
Confidence 57899999999999999999999999999999999999999999999999888899999999999997 66544333
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCCC
Q 003804 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 247 (794)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~~ 247 (794)
+.+++. +.. .+ ..+...|+..|++
T Consensus 148 ~ei~~~-------lg~-----------~~--~~vi~iSAktG~G------------------------------------ 171 (600)
T PRK05433 148 QEIEDV-------IGI-----------DA--SDAVLVSAKTGIG------------------------------------ 171 (600)
T ss_pred HHHHHH-------hCC-----------Cc--ceEEEEecCCCCC------------------------------------
Confidence 222221 110 00 0133334322210
Q ss_pred ceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHHH
Q 003804 248 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEM 327 (794)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 327 (794)
+..||++
T Consensus 172 -------------------------------------------------------------------------I~~Ll~~ 178 (600)
T PRK05433 172 -------------------------------------------------------------------------IEEVLEA 178 (600)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1347888
Q ss_pred HHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCC
Q 003804 328 MIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 407 (794)
Q Consensus 328 i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n 407 (794)
+++++|+|.. ++++|+.|+|||++.+++.|. ++++||++|+|++||.|++..
T Consensus 179 I~~~lp~P~~-------------------------~~~~pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd~i~~~~-- 230 (600)
T PRK05433 179 IVERIPPPKG-------------------------DPDAPLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGDKIKMMS-- 230 (600)
T ss_pred HHHhCccccC-------------------------CCCCCceEEEEEEEecCCCce-EEEEEEEcCEEecCCEEEEec--
Confidence 8899999831 356899999999999999998 999999999999999999653
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe-cc---ccccccce-eeecCCCCCcccccccccCCCceEE
Q 003804 408 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 482 (794)
Q Consensus 408 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 482 (794)
++.+ ++|.+|+.+++ +..+++++.||||+++. |+ +++ ++| ||++.......+++++.++ +|+++
T Consensus 231 --~~~~-----~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~v~ 299 (600)
T PRK05433 231 --TGKE-----YEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDA--RVGDTITLAKNPAEEPLPGFKEV-KPMVF 299 (600)
T ss_pred --CCce-----EEEEEeeccCC-CceECcEEcCCCEEEEeccccccccc--CCCCEEECCCCccccCCCCCCCC-CcEEE
Confidence 2332 78999996665 88999999999998885 44 444 678 9988765111467778775 99999
Q ss_pred EEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEe-----cchhHHHHHHHHHHhhccCCeeeEEcCcEEEEE
Q 003804 483 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 557 (794)
Q Consensus 483 ~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g-----~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yr 557 (794)
++|+|.+.+|.++|.+||++|++|||||.+. .+|+|.++.| ||+|||||+.+||+++| |+++.+++|+|+||
T Consensus 300 ~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~--~~~v~~~~P~V~Yr 376 (600)
T PRK05433 300 AGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYE 376 (600)
T ss_pred EEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh--CceEEEecCEEEEE
Confidence 9999999999999999999999999999997 6899999988 99999999999999999 99999999999999
Q ss_pred eecccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEE
Q 003804 558 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRGIC 637 (794)
Q Consensus 558 ETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~ 637 (794)
|||++.. .+.++ + | .|+|
T Consensus 377 eti~~g~---------------~~~~~------------------------~-----------------p-~~~p----- 394 (600)
T PRK05433 377 VTLTDGE---------------VIEVD------------------------N-----------------P-SKLP----- 394 (600)
T ss_pred EEEeCCc---------------EEEEE------------------------C-----------------c-ccCC-----
Confidence 9987620 11111 0 1 1333
Q ss_pred EEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCc
Q 003804 638 FEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPL 717 (794)
Q Consensus 638 v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~ 717 (794)
|+++.+ +||||||+++|.+|++|+|+|++++++|||++++++..+ ++
T Consensus 395 ----------ds~~~~---------------------~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~--~~ 441 (600)
T PRK05433 395 ----------DPGKIE---------------------EIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG--NR 441 (600)
T ss_pred ----------Cccccc---------------------eEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC--Ce
Confidence 333321 699999999999999999999999999999999999865 47
Q ss_pred EEEEEEechhhh-hCchHHHhhhcCCceEeeeEecccccc
Q 003804 718 YNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDMM 756 (794)
Q Consensus 718 ~~I~a~vP~~e~-~~y~~~Lrs~T~G~g~~~~~f~~y~~~ 756 (794)
..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++.
T Consensus 442 ~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 442 VELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred EEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 999999999999 999999999999999999999999985
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.7e-72 Score=651.81 Aligned_cols=464 Identities=26% Similarity=0.391 Sum_probs=381.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
..|++| +||+|||||||+++|++.+|.+++...+ .+++|+.++|++||+|+.++.+++.|.. .++
T Consensus 3 iRNi~I---IGh~d~GKTTL~~rLl~~~g~i~~~~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~-----------~~g 67 (595)
T TIGR01393 3 IRNFSI---IAHIDHGKSTLADRLLEYTGAISEREMR-EQVLDSMDLERERGITIKAQAVRLNYKA-----------KDG 67 (595)
T ss_pred eeEEEE---ECCCCCCHHHHHHHHHHHcCCCcccccc-ccccCCChHHHhcCCCeeeeEEEEEEEc-----------CCC
Confidence 458999 9999999999999999999998764333 5799999999999999999999998851 123
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHH
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~ 167 (794)
+.+.+||||||||.||..++.++++.+|++|+|||+++|++.||...|..+...++|.++|+||+|+. +.+.++..
T Consensus 68 ~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~----~~~~~~~~ 143 (595)
T TIGR01393 68 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLP----SADPERVK 143 (595)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCC----ccCHHHHH
Confidence 46899999999999999999999999999999999999999999999988888899999999999997 65544332
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCCC
Q 003804 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 247 (794)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~~ 247 (794)
+.+++. +.. .+ ..+.+.|+..|+
T Consensus 144 ~el~~~-------lg~-----------~~--~~vi~vSAktG~------------------------------------- 166 (595)
T TIGR01393 144 KEIEEV-------IGL-----------DA--SEAILASAKTGI------------------------------------- 166 (595)
T ss_pred HHHHHH-------hCC-----------Cc--ceEEEeeccCCC-------------------------------------
Confidence 222221 110 00 012233332111
Q ss_pred ceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHHH
Q 003804 248 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEM 327 (794)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 327 (794)
.++.|++.
T Consensus 167 ------------------------------------------------------------------------GI~~Lle~ 174 (595)
T TIGR01393 167 ------------------------------------------------------------------------GIEEILEA 174 (595)
T ss_pred ------------------------------------------------------------------------CHHHHHHH
Confidence 01347888
Q ss_pred HHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCC
Q 003804 328 MIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 407 (794)
Q Consensus 328 i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n 407 (794)
+++++|+|.. ++++|+.|+|||++.+++.|. ++++||++|+|++||.|++..
T Consensus 175 I~~~lp~p~~-------------------------~~~~pl~~~V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~~~~-- 226 (595)
T TIGR01393 175 IVKRVPPPKG-------------------------DPDAPLKALIFDSHYDNYRGV-VALVRVFEGTIKPGDKIRFMS-- 226 (595)
T ss_pred HHHhCCCCCC-------------------------CCCCCeEEEEEEEEEeCCCcE-EEEEEEECCEEecCCEEEEec--
Confidence 8899999931 356899999999999999998 999999999999999999654
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe-cc---ccccccce-eeecCCCCCcccccccccCCCceEE
Q 003804 408 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 482 (794)
Q Consensus 408 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 482 (794)
++.. ++|.+|+.+.+.. .+++++.||||+++. |+ +++ ++| ||++.+.....+++++.++ +|+++
T Consensus 227 --~~~~-----~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~v~ 295 (595)
T TIGR01393 227 --TGKE-----YEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDV--RVGDTITHVKNPAKEPLPGFKEV-KPMVF 295 (595)
T ss_pred --CCCe-----eEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCcc--CCCCEEECCCCccccCCCCCcCC-CcEEE
Confidence 2332 6899999777665 999999999998885 44 445 678 9988765111367777875 99999
Q ss_pred EEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEE-----ecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEE
Q 003804 483 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIA-----GAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 557 (794)
Q Consensus 483 ~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~-----g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yr 557 (794)
++|.|.+.+|.++|.+||++|++|||+|.+.. +|+|.++. |||+|||||+++||+++| |+++.+++|+|+||
T Consensus 296 ~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~-e~~~~l~~g~r~g~lG~lHlei~~erL~re~--~~~v~~~~P~V~Yr 372 (595)
T TIGR01393 296 AGLYPIDTEDYEDLRDALEKLKLNDASLTYEP-ESSPALGFGFRCGFLGLLHMEIIQERLEREF--NLDLITTAPSVIYR 372 (595)
T ss_pred EEEEECCcccHHHHHHHHHHHhccCCeEEEEe-cCCcccccccEEeeeeHHHHHHHHHHHHHHh--CCeeEEecCEEEEE
Confidence 99999999999999999999999999999974 78887777 499999999999999999 99999999999999
Q ss_pred eecccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEE
Q 003804 558 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRGIC 637 (794)
Q Consensus 558 ETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~ 637 (794)
|||++. + +++++ + | .|+|+.|.
T Consensus 373 eti~~g-----------~----~~~~~------------------------~-----------------p-~~~p~~~~- 394 (595)
T TIGR01393 373 VYLTNG-----------E----VIEVD------------------------N-----------------P-SDLPDPGK- 394 (595)
T ss_pred EEecCC-----------c----EEEEE------------------------C-----------------c-ccCCCccc-
Confidence 998741 0 11111 0 1 26665541
Q ss_pred EEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCc
Q 003804 638 FEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPL 717 (794)
Q Consensus 638 v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~ 717 (794)
-|.||||||+++|.+|++|+|+|++++++|||++.+++..++ ++
T Consensus 395 -----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~-~~ 438 (595)
T TIGR01393 395 -----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDP-NR 438 (595)
T ss_pred -----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCC-Ce
Confidence 267999999999999999999999999999999999997543 47
Q ss_pred EEEEEEechhhh-hCchHHHhhhcCCceEeeeEeccccc
Q 003804 718 YNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDM 755 (794)
Q Consensus 718 ~~I~a~vP~~e~-~~y~~~Lrs~T~G~g~~~~~f~~y~~ 755 (794)
..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++
T Consensus 439 ~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~ 477 (595)
T TIGR01393 439 VELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRP 477 (595)
T ss_pred EEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccc
Confidence 899999999997 99999999999999999999999998
No 20
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-68 Score=564.76 Aligned_cols=463 Identities=24% Similarity=0.430 Sum_probs=402.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.|||| ++|+|||||||++.||.++|.......=.-|.||+...|+||||||-+.+..+.|+
T Consensus 6 RNIAI---IAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~---------------- 66 (603)
T COG1217 6 RNIAI---IAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN---------------- 66 (603)
T ss_pred ceeEE---EEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----------------
Confidence 58999 99999999999999999999887632112479999999999999999999999996
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHH
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~~ 168 (794)
+++||++|||||.||-+|+++.+..+|+++|+|||.+|+.+||+.+++.+.+.++++|+||||+||+ .+.|+++.+
T Consensus 67 ~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp----~Arp~~Vvd 142 (603)
T COG1217 67 GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP----DARPDEVVD 142 (603)
T ss_pred CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC----CCCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 999999887
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCCCc
Q 003804 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~~~ 248 (794)
..-.++-++.+--.+ . .-++.++|+..||+..- +..
T Consensus 143 ~vfDLf~~L~A~deQ----------L---dFPivYAS~~~G~a~~~-----------------------------~~~-- 178 (603)
T COG1217 143 EVFDLFVELGATDEQ----------L---DFPIVYASARNGTASLD-----------------------------PED-- 178 (603)
T ss_pred HHHHHHHHhCCChhh----------C---CCcEEEeeccCceeccC-----------------------------ccc--
Confidence 777777665543221 1 12689999999986310 000
Q ss_pred eeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHHHH
Q 003804 249 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 328 (794)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 328 (794)
+ ++. ..+|+++|
T Consensus 179 ------~--------------------------~~~------------------------------------m~pLfe~I 190 (603)
T COG1217 179 ------E--------------------------ADD------------------------------------MAPLFETI 190 (603)
T ss_pred ------c--------------------------ccc------------------------------------hhHHHHHH
Confidence 0 000 15799999
Q ss_pred HhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCC
Q 003804 329 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 408 (794)
Q Consensus 329 ~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~ 408 (794)
.+|.|.|. .|.++||.++|+-+..+++.|+ ++.+||++|++|+|+.|.++..+
T Consensus 191 ~~hvp~P~-------------------------~~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~- 243 (603)
T COG1217 191 LDHVPAPK-------------------------GDLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD- 243 (603)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC-
Confidence 99999993 2578999999999999999998 99999999999999999987633
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEe
Q 003804 409 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 487 (794)
Q Consensus 409 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep 487 (794)
+. ....||++++-+.|-++.++++|.||||+||+|+.+. ..| |+|++.. +.+++.+..- +|.+++....
T Consensus 244 --g~---~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~--~igdTi~d~~~--~~aLp~l~iD-ePTlsMtf~v 313 (603)
T COG1217 244 --GT---TENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI--NIGDTICDPDN--PEALPALSVD-EPTLSMTFSV 313 (603)
T ss_pred --Cc---EEeeEEEeeeeccceeeeecccccccCEEEEcCcccc--cccccccCCCC--ccCCCCcccC-CCceEEEEEe
Confidence 22 2347999999999999999999999999999999998 566 9999988 7777777775 8888888765
Q ss_pred CCC---------CCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEE
Q 003804 488 KVA---------SDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 557 (794)
Q Consensus 488 ~~~---------~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yr 557 (794)
.+. -...++.+.|.+-.+.+-+|+|+.. +-..+.++|.|||||-|+++.+||+ |.++.+|.|+|.||
T Consensus 314 N~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE---GfEl~VsrP~Vi~k 390 (603)
T COG1217 314 NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE---GFELQVSRPEVIIK 390 (603)
T ss_pred cCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc---ceEEEecCceEEEE
Confidence 432 3456889999999999999999865 5688999999999999999999998 99999999999999
Q ss_pred eecccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEE
Q 003804 558 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRGIC 637 (794)
Q Consensus 558 ETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~ 637 (794)
| | +|.
T Consensus 391 e-i-----------------------------------dG~--------------------------------------- 395 (603)
T COG1217 391 E-I-----------------------------------DGV--------------------------------------- 395 (603)
T ss_pred e-c-----------------------------------CCc---------------------------------------
Confidence 9 1 121
Q ss_pred EEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCc
Q 003804 638 FEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPL 717 (794)
Q Consensus 638 v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~ 717 (794)
.+||+-.+.|.||+++.|.|+..|..|+|...+|.+.+ .++
T Consensus 396 --------------------------------------~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g-~G~ 436 (603)
T COG1217 396 --------------------------------------KCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDG-KGR 436 (603)
T ss_pred --------------------------------------CcCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCC-CCe
Confidence 57999999999999999999999999999999998864 479
Q ss_pred EEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCC
Q 003804 718 YNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 760 (794)
Q Consensus 718 ~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~ 760 (794)
+++...+|.+.++||.+++-++|+|.|.+...|+||+|+.+++
T Consensus 437 ~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i 479 (603)
T COG1217 437 VRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEI 479 (603)
T ss_pred EEEEEEccCcceeccchheeeccccceeeeecccccccccccc
Confidence 9999999999999999999999999999999999999998864
No 21
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-65 Score=552.30 Aligned_cols=466 Identities=27% Similarity=0.376 Sum_probs=387.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
..|++| ++|+|||||||+++||..+|.+++. .|..+++|..+-||||||||++.+.++.|. ++
T Consensus 60 iRNfsI---IAHVDHGKSTLaDrLLe~tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~-------------~~ 122 (650)
T KOG0462|consen 60 IRNFSI---IAHVDHGKSTLADRLLELTGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYK-------------DG 122 (650)
T ss_pred ccceEE---EEEecCCcchHHHHHHHHhCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEE-------------cC
Confidence 458888 9999999999999999999988875 566789999999999999999999999997 24
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHH
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~ 167 (794)
++|.+|+||||||+||..|+.+++..||||||||||.+|+++||...+..|.+.++.+|.|+||+|++ .++++++.
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp----~adpe~V~ 198 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP----SADPERVE 198 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC----CCCHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999 99999887
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCCC
Q 003804 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 247 (794)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~~ 247 (794)
.++.+.++. .|. .+.+.|+..||+
T Consensus 199 ~q~~~lF~~------------------~~~--~~i~vSAK~G~~------------------------------------ 222 (650)
T KOG0462|consen 199 NQLFELFDI------------------PPA--EVIYVSAKTGLN------------------------------------ 222 (650)
T ss_pred HHHHHHhcC------------------Ccc--ceEEEEeccCcc------------------------------------
Confidence 766665441 111 466667765552
Q ss_pred ceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHHH
Q 003804 248 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEM 327 (794)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 327 (794)
+..+|++
T Consensus 223 -------------------------------------------------------------------------v~~lL~A 229 (650)
T KOG0462|consen 223 -------------------------------------------------------------------------VEELLEA 229 (650)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1237999
Q ss_pred HHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCC
Q 003804 328 MIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 407 (794)
Q Consensus 328 i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n 407 (794)
|++..|.|. ...++||.+++|..+.|.++|. ++++||..|.+++||.|..+.
T Consensus 230 II~rVPpP~-------------------------~~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~~-- 281 (650)
T KOG0462|consen 230 IIRRVPPPK-------------------------GIRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSAA-- 281 (650)
T ss_pred HHhhCCCCC-------------------------CCCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEee--
Confidence 999999994 1357899999999999999998 999999999999999998643
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEec-cccccccce-eeecCCC-CCcccccccccCCCceEEEE
Q 003804 408 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG-LDQYITKNA-TLTNEKE-VDAHPIRAMKFSVSPVVRVA 484 (794)
Q Consensus 408 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~g-l~~~~~~tg-Tl~~~~~-~~~~~~~~~~~~~~Pv~~~a 484 (794)
++++ ...+.-.++.+..-...++....+|+|++..| +++. ..| |+++... +....++.... +.|++++.
T Consensus 282 --t~~~---yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea--~IGdTi~~~~~~~~v~tl~~~~~-~~pMvFvg 353 (650)
T KOG0462|consen 282 --TGKS---YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEA--QIGDTIAHKSVTKAVETLPGFEP-TKPMVFVG 353 (650)
T ss_pred --cCcc---eEeEEeEEeccCceeeeeecccccceeEecccccccc--cccceeeecccCcccCcCCCCCC-CcceEEec
Confidence 3333 33566666666666666777778888888777 8887 567 8887652 11344555554 59999999
Q ss_pred EEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCC---c-EEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeec
Q 003804 485 VQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESG---E-HIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 560 (794)
Q Consensus 485 Iep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etg---e-~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi 560 (794)
..|.+..|...|..++.+|+.+|+++.+..+.++ + +.+++.|.|||+|..+||+++| |.++.+++|.|+||=-.
T Consensus 354 ~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey--g~elivt~PtV~Yr~~~ 431 (650)
T KOG0462|consen 354 LFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY--GAELIVTPPTVPYRVVY 431 (650)
T ss_pred cccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc--CceeeecCCcceEEEEe
Confidence 9999999999999999999999999999876444 3 7999999999999999999999 99999999999999743
Q ss_pred ccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEE
Q 003804 561 LEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRGICFEV 640 (794)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l 640 (794)
.+..+.. ..-| . -+|
T Consensus 432 ~~~~~~~--------------i~np----------------~---------------------------~fp-------- 446 (650)
T KOG0462|consen 432 SNGDEIL--------------ISNP----------------A---------------------------LFP-------- 446 (650)
T ss_pred cCCceee--------------ecCh----------------h---------------------------hCC--------
Confidence 3221100 0000 0 011
Q ss_pred EeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEE
Q 003804 641 CDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNI 720 (794)
Q Consensus 641 ~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I 720 (794)
|..... ..|||+...+|.+|+||+|.|+..++.|||...++...++ ++..|
T Consensus 447 -------~~~~v~---------------------~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~-nr~~l 497 (650)
T KOG0462|consen 447 -------DPSDVK---------------------EFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDG-NRVML 497 (650)
T ss_pred -------Ccccch---------------------hhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccC-CeEEE
Confidence 100110 1799999999999999999999999999999999998876 48899
Q ss_pred EEEechhhhhC-chHHHhhhcCCceEeeeEeccccc
Q 003804 721 KAYLPVVESFG-FSSTLRAATSGQAFPQCVFDHWDM 755 (794)
Q Consensus 721 ~a~vP~~e~~~-y~~~Lrs~T~G~g~~~~~f~~y~~ 755 (794)
+-++|++|+.+ |...|.|.|+|.|+|..+|++|++
T Consensus 498 ky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~ 533 (650)
T KOG0462|consen 498 KYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQA 533 (650)
T ss_pred EEecChHHHHHHHHHHHhccccceeEEeeccccccc
Confidence 99999999998 999999999999999999999994
No 22
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=7e-65 Score=579.70 Aligned_cols=433 Identities=23% Similarity=0.310 Sum_probs=343.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc------CCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV------AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~------~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
+..||+| +||+|||||||+++|++.+|.+.+.. .|....+|+++.|++||+|+.++...+.|+
T Consensus 9 ~~Rni~I---iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~-------- 77 (526)
T PRK00741 9 KRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR-------- 77 (526)
T ss_pred cCCEEEE---ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC--------
Confidence 3469999 99999999999999999999887620 122346899999999999999999999995
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccC
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 160 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~ 160 (794)
++++|+||||||.||..++.++++.+|+||+|||+++|++.||+.+|+.+...++|+++|+||||+. +
T Consensus 78 --------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~----~ 145 (526)
T PRK00741 78 --------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD----G 145 (526)
T ss_pred --------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc----c
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcC--CChHhHHHHhhc
Q 003804 161 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWG 238 (794)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~--id~~~l~~~~wg 238 (794)
+++.++.+.+++.+. . .+...++|++.+. .|. +|+.....+.|.
T Consensus 146 a~~~~~l~~i~~~l~-------~-----------~~~p~~~Pig~~~----------------~f~Gvvdl~~~~~~~~~ 191 (526)
T PRK00741 146 REPLELLDEIEEVLG-------I-----------ACAPITWPIGMGK----------------RFKGVYDLYNDEVELYQ 191 (526)
T ss_pred cCHHHHHHHHHHHhC-------C-----------CCeeEEeccccCC----------------ceeEEEEeecceeeecc
Confidence 886655554444332 0 1122356666551 121 344443333331
Q ss_pred ccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHh--------HHHHH
Q 003804 239 ENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELM--------GKALM 310 (794)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~--------~~~l~ 310 (794)
...+ +. .++.+.+++.|+++|++||++ ..+ +++... .....
T Consensus 192 -----~~~~--------~~--------------~~~~e~~~~~dd~lle~~l~~--~~~--~~l~~~lel~~~~~~~~~~ 240 (526)
T PRK00741 192 -----PGEG--------HT--------------IQEVEIIKGLDNPELDELLGE--DLA--EQLREELELVQGASNEFDL 240 (526)
T ss_pred -----cCCC--------Cc--------------ceeeeeccCCCHHHHHHHhcc--cHH--HHHHHHHHhhhhcccchhH
Confidence 1000 00 022456778888899999886 322 222100 11113
Q ss_pred HHHH-hccccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeee--
Q 003804 311 KRVM-QTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIP-- 377 (794)
Q Consensus 311 ~~i~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~-- 377 (794)
+++. ++++|+ +++|||+|++|+|+|.++... .....+ .+.|++|+|||+.+
T Consensus 241 ~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~---------------~~~~~~-~~~~~~~~VFK~~~~m 304 (526)
T PRK00741 241 EAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD---------------EREVEP-TEEKFSGFVFKIQANM 304 (526)
T ss_pred HHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc---------------ceeecC-CCCceEEEEEEEEecC
Confidence 3333 578886 799999999999999753211 000112 34579999999984
Q ss_pred -cCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccc
Q 003804 378 -ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKN 456 (794)
Q Consensus 378 -~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~t 456 (794)
+++.|+ ++|+|||||+|++|+.|+ |.+++++ +|+++++.++|.++++|++|.||||+++.|++++ ++
T Consensus 305 ~~~~~gr-lafvRV~sG~l~~g~~v~----~~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~--~~ 372 (526)
T PRK00741 305 DPKHRDR-IAFVRVCSGKFEKGMKVR----HVRTGKD-----VRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI--QI 372 (526)
T ss_pred CCCcCce-EEEEEEeccEECCCCEEE----eccCCce-----EEecceEEEecCCceECceeCCCCEEEEECCCCC--cc
Confidence 457787 999999999999999999 4455554 7999999999999999999999999999999997 78
Q ss_pred e-eeecCCCCCcccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHH
Q 003804 457 A-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICL 534 (794)
Q Consensus 457 g-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~ 534 (794)
| ||++.+ +..+++++++ .|+++++|+|+++.|.+||.+||++|++||| +++.++ +|||++|+||||+||||++
T Consensus 373 GDTL~~~~---~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~ 447 (526)
T PRK00741 373 GDTFTQGE---KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVA 447 (526)
T ss_pred CCCccCCC---ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHH
Confidence 8 998754 4567788886 9999999999999999999999999999995 999887 8999999999999999999
Q ss_pred HHHHhhccCCeeeEEcCcEEEEEeeccc
Q 003804 535 KDLQDDFMGGAEIIKSDPVVSFRETVLE 562 (794)
Q Consensus 535 ~~L~~~f~~~v~v~~~~p~V~yrETi~~ 562 (794)
+||+++| |+++.+++|+|++-.-|..
T Consensus 448 ~RL~~ey--~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 448 HRLKNEY--NVEAIYEPVGVATARWVEC 473 (526)
T ss_pred HHHHHHh--CCEEEEecCCccEEEEEeC
Confidence 9999999 9999999999999887753
No 23
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.2e-62 Score=561.58 Aligned_cols=431 Identities=20% Similarity=0.290 Sum_probs=326.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc----CC--ceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----AG--DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----~G--~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
+..+|+| +||+|||||||+++||+.+|.+.+.. .| ..+++|+.+.|++||+|+.++...+.|.
T Consensus 10 ~~Rniai---iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~-------- 78 (527)
T TIGR00503 10 KRRTFAI---ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR-------- 78 (527)
T ss_pred cCCEEEE---EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC--------
Confidence 4569999 99999999999999999999887620 11 1368999999999999999999999995
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccC
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 160 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~ 160 (794)
++++||||||||.||..++.++++.+|++|+|||+..|+..+|+.+|+.+...++|+++|+||+|+. +
T Consensus 79 --------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~----~ 146 (527)
T TIGR00503 79 --------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD----I 146 (527)
T ss_pred --------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc----C
Confidence 8999999999999999999999999999999999999999999999999988999999999999998 8
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccC--ccceeeehhhHHHHHhhhcCCChHhHHHHhhc
Q 003804 161 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWG 238 (794)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg 238 (794)
++++++.+.+++.+.. .+...++|++.+ +.|. +|+.....++
T Consensus 147 ~~~~~ll~~i~~~l~~------------------~~~~~~~PIg~~~~f~gv----------------~d~l~~~~~~-- 190 (527)
T TIGR00503 147 RDPLELLDEVENELKI------------------NCAPITWPIGCGKLFKGV----------------YHLLKDETYL-- 190 (527)
T ss_pred CCHHHHHHHHHHHhCC------------------CCccEEEEecCCCceeEE----------------EEcccCccee--
Confidence 8877666555544321 112235555443 1111 2333322222
Q ss_pred ccccCCC-CCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHH------HhhcCCcCCHHHHHHhHHHHHH
Q 003804 239 ENFFDPA-TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPM------LQKLGVTMKSEEKELMGKALMK 311 (794)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~------l~~~~~~l~~~el~~~~~~l~~ 311 (794)
|... .+.....+. ..... .| +.+.++.. +.++++ +++.+.+++. ++.+
T Consensus 191 ---y~~~~~~~~~~~~~-~~~~~--------~~---~~e~~~~~--~~~~~~~~~le~~~~~~~~~~~-------~~~~- 245 (527)
T TIGR00503 191 ---YQSGTGGTIQAVRQ-VKGLN--------NP---ALDSAVGS--DLAQQLRDELELVEGASNEFDL-------AAFH- 245 (527)
T ss_pred ---cCccCCCceeEeeh-hccCC--------Ch---hhhhhhhH--HHHHHHHHHHHHHhhhccccCH-------HHHh-
Confidence 2211 111111000 00000 00 01111111 122222 2221122221 1111
Q ss_pred HHHhccccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeee--c-
Q 003804 312 RVMQTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIP--A- 378 (794)
Q Consensus 312 ~i~~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~--~- 378 (794)
.++++|+ ++.|||++++|+|+|.++.... ....+ .++|++|+|||+.+ +
T Consensus 246 --~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~---------------~~~~~-~~~~~~~~VFK~~~~mdp 307 (527)
T TIGR00503 246 --GGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT---------------RTVEP-TEEKFSGFVFKIQANMDP 307 (527)
T ss_pred --cCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc---------------eecCC-CCCCeeEEEEEEEeccCc
Confidence 1578886 8999999999999997532110 01122 45679999999998 6
Q ss_pred CCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-
Q 003804 379 SDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA- 457 (794)
Q Consensus 379 ~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg- 457 (794)
++.|+ ++|+|||||+|++|+.|+ |.+++++ +|+++++.++|.++++|++|.||||+++.|++++ ++|
T Consensus 308 ~~~gr-iaf~RV~sG~l~~g~~v~----~~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~--~~GD 375 (527)
T TIGR00503 308 KHRDR-VAFMRVVSGKYEKGMKLK----HVRTGKD-----VVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI--QIGD 375 (527)
T ss_pred ccCce-EEEEEEeeeEEcCCCEEE----ecCCCCc-----EEecchhhhhcCCceEcceeCCCCEEEEECCCCc--ccCC
Confidence 47887 999999999999999999 4455554 7999999999999999999999999999999997 788
Q ss_pred eeecCCCCCcccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHH
Q 003804 458 TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKD 536 (794)
Q Consensus 458 Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~ 536 (794)
|||+. . ...+.+++++ .|+++++|+|+++.|++||.+||++|++||| +++.++ +|+|++|+|||||||||+++|
T Consensus 376 tl~~~-~--~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~R 450 (527)
T TIGR00503 376 TFTQG-E--KIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYR 450 (527)
T ss_pred EecCC-C--ceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHH
Confidence 99884 3 4567788876 9999999999999999999999999999998 899887 899999999999999999999
Q ss_pred HHhhccCCeeeEEcCcEEEEEe
Q 003804 537 LQDDFMGGAEIIKSDPVVSFRE 558 (794)
Q Consensus 537 L~~~f~~~v~v~~~~p~V~yrE 558 (794)
|+++| |+++.+++|+|+.-=
T Consensus 451 L~~ey--~v~v~~~~~~v~~~r 470 (527)
T TIGR00503 451 LKEEY--NVEARYEPVNVATAR 470 (527)
T ss_pred HHHHh--CCeEEEeCCCceEEE
Confidence 99999 999999999998543
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-60 Score=505.42 Aligned_cols=468 Identities=26% Similarity=0.391 Sum_probs=381.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
...|.+| ++|.|||||||+++||..+|.++.... +.+++|+++.||||||||++..+.+.|.. .+
T Consensus 8 ~IRNFsI---IAHIDHGKSTLaDRlle~t~~~~~Rem-~~Q~LDsMdiERERGITIKaq~v~l~Yk~-----------~~ 72 (603)
T COG0481 8 NIRNFSI---IAHIDHGKSTLADRLLELTGGLSEREM-RAQVLDSMDIERERGITIKAQAVRLNYKA-----------KD 72 (603)
T ss_pred hccceEE---EEEecCCcchHHHHHHHHhcCcChHHH-HHHhhhhhhhHhhcCceEEeeEEEEEEEe-----------CC
Confidence 4458888 999999999999999999999877533 25799999999999999999999999973 34
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++.|.+||||||||+||.-|+.+++..|.||+|||||+.|+++||......+...++-+|-|+||+|++ .++++++
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP----~Adperv 148 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP----AADPERV 148 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC----CCCHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999 9999988
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~ 246 (794)
.+.+++++.- ++. ..+..|+..|
T Consensus 149 k~eIe~~iGi------------------d~~--dav~~SAKtG------------------------------------- 171 (603)
T COG0481 149 KQEIEDIIGI------------------DAS--DAVLVSAKTG------------------------------------- 171 (603)
T ss_pred HHHHHHHhCC------------------Ccc--hheeEecccC-------------------------------------
Confidence 7777665541 000 1122222111
Q ss_pred CceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHH
Q 003804 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (794)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (794)
+| +..+|+
T Consensus 172 ----------------------------------------------~g--------------------------I~~iLe 179 (603)
T COG0481 172 ----------------------------------------------IG--------------------------IEDVLE 179 (603)
T ss_pred ----------------------------------------------CC--------------------------HHHHHH
Confidence 11 244899
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCC
Q 003804 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (794)
Q Consensus 327 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 406 (794)
+|++.+|+|. .++++|+-|++|..+.|++.|- ++++||+.|++++||.+.+++
T Consensus 180 ~Iv~~iP~P~-------------------------g~~~~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdki~~m~- 232 (603)
T COG0481 180 AIVEKIPPPK-------------------------GDPDAPLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDKIRMMS- 232 (603)
T ss_pred HHHhhCCCCC-------------------------CCCCCcceEEEEeccccccceE-EEEEEEeeceecCCCEEEEEe-
Confidence 9999999993 2578999999999999999997 999999999999999999875
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE-ecccccc-ccce-eeecCCCCCcccccccccCCCceEEE
Q 003804 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQYI-TKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 483 (794)
Q Consensus 407 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai-~gl~~~~-~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 483 (794)
+|++ ..|.++..+.- ...+++++.||+++-+ .|+++.. ++.| |++...+....++++.+.. +|++.+
T Consensus 233 ---tg~~-----y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~-~P~Vf~ 302 (603)
T COG0481 233 ---TGKE-----YEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEV-KPMVFA 302 (603)
T ss_pred ---cCCE-----EEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcC-CceEEE
Confidence 3433 57777777665 7788999999999755 3554430 1445 7764433225677888765 999999
Q ss_pred EEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCC----CcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEee
Q 003804 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEES----GEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559 (794)
Q Consensus 484 aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~et----ge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrET 559 (794)
.+.|.+..|.+.|.+||.+|...|-+|.++.+.+ --+-+..+|-|||||+.+||+|+| ++++....|.|.|+=.
T Consensus 303 GlyPid~~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf--~ldlI~TaPsV~Y~v~ 380 (603)
T COG0481 303 GLYPVDSDDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYKVE 380 (603)
T ss_pred eecccChhHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhh--CcceEecCCceEEEEE
Confidence 9999999999999999999999999999976532 236788899999999999999999 9999999999999976
Q ss_pred cccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEE
Q 003804 560 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRGICFE 639 (794)
Q Consensus 560 i~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~ 639 (794)
.++..+. .+ . + |. - +|
T Consensus 381 ~~~g~~~---------------~i-----------~--N--Ps----~-----------------------~P------- 396 (603)
T COG0481 381 LTDGEEI---------------EV-----------D--N--PS----D-----------------------LP------- 396 (603)
T ss_pred EcCCcEE---------------Ee-----------c--C--hH----h-----------------------CC-------
Confidence 5432111 00 0 0 00 0 01
Q ss_pred EEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEE
Q 003804 640 VCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYN 719 (794)
Q Consensus 640 l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~ 719 (794)
|...+ -.+.||+.+++|.+|++|+|.|+...+.+||...+++..+. ++..
T Consensus 397 --------~~~~I---------------------~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~-~rv~ 446 (603)
T COG0481 397 --------DPNKI---------------------EEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQ-NRVM 446 (603)
T ss_pred --------Chhhh---------------------heeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecC-ceEE
Confidence 00000 02799999999999999999999999999999999887653 5889
Q ss_pred EEEEechhhh-hCchHHHhhhcCCceEeeeEeccccc
Q 003804 720 IKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDM 755 (794)
Q Consensus 720 I~a~vP~~e~-~~y~~~Lrs~T~G~g~~~~~f~~y~~ 755 (794)
+...+|++|. ++|-..|.|.|+|.|+|..+|.+|++
T Consensus 447 l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~ 483 (603)
T COG0481 447 LTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRE 483 (603)
T ss_pred EEEecchHHHHHHHhHhhhccccceeeeccccccccc
Confidence 9999999997 59999999999999999999999997
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-50 Score=425.84 Aligned_cols=430 Identities=24% Similarity=0.345 Sum_probs=307.9
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCc--------eeecCChhhHhhhCcccccceEEEEeecchhhhh
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~--------~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 79 (794)
.-..+| +.|+|+|||||++.||...|+|.. +|. ...+|+++.|++|||+|.+|...|.|.
T Consensus 12 RRTFAI---ISHPDAGKTTlTEkLLlfGgaIq~--AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~------- 79 (528)
T COG4108 12 RRTFAI---ISHPDAGKTTLTEKLLLFGGAIQE--AGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA------- 79 (528)
T ss_pred hcceeE---EecCCCCcccHHHHHHHhcchhhh--cceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC-------
Confidence 345577 999999999999999999888865 443 458999999999999999999999995
Q ss_pred ccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhcc
Q 003804 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (794)
Q Consensus 80 ~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~ 159 (794)
++.|||+|||||.||+..+.+.|.++|.||.||||..|+++||.++++-|..+++|++-|||||||.
T Consensus 80 ---------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~---- 146 (528)
T COG4108 80 ---------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDRE---- 146 (528)
T ss_pred ---------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcc
Q 003804 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 239 (794)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~ 239 (794)
+-+|-++...+.+.+. + .+...++|+|.+. .|...| |+..-.-.
T Consensus 147 ~rdP~ELLdEiE~~L~-----i-------------~~~PitWPIG~gk--------~F~Gvy------~l~~~~v~---- 190 (528)
T COG4108 147 GRDPLELLDEIEEELG-----I-------------QCAPITWPIGMGK--------DFKGVY------HLYNDEVE---- 190 (528)
T ss_pred cCChHHHHHHHHHHhC-----c-------------ceecccccccCCc--------ccceee------eeccCEEE----
Confidence 8888877666555443 1 1222356666662 122112 10000000
Q ss_pred cccCCCC---CceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhc
Q 003804 240 NFFDPAT---RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQT 316 (794)
Q Consensus 240 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 316 (794)
.|.+.. +......... . .++..+.+-+..+ +.+.+ +-+++ .+.+-+++.+ +.+. .+
T Consensus 191 -~y~~~~~~~~~~~~~~~~~-~-~p~~~~~l~~~~~---~~~~e-e~EL~----~~a~~~Fd~~-------~fl~---G~ 249 (528)
T COG4108 191 -LYESGHTDQERRADIVKGL-D-NPELDALLGEDLA---EQLRE-ELELV----QGAGNEFDLE-------AFLA---GE 249 (528)
T ss_pred -EeccCCCccccccccccCC-C-ChhHHhhhchHHH---HHHHH-HHHHH----HhhccccCHH-------HHhc---CC
Confidence 111111 0000000000 0 0011111111110 11110 00111 1111111111 1111 23
Q ss_pred cccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCC-CCCeEEEEEEeeecCC---CC
Q 003804 317 WLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIPASD---KG 382 (794)
Q Consensus 317 ~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~plva~VfK~~~~~~---~g 382 (794)
..|+ |+.+||++++|.|+|..++... +...+ +..+.+||||+..+-+ ++
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~-----------------~~v~p~e~kfsGFVFKIQANMDp~HRD 312 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT-----------------REVEPTEDKFSGFVFKIQANMDPKHRD 312 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc-----------------CcccCCCCccceEEEEEEcCCCccccc
Confidence 4443 8999999999999996543210 01122 2349999999987433 34
Q ss_pred cceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeec
Q 003804 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTN 461 (794)
Q Consensus 383 ~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~ 461 (794)
+ ++|+||.||.+.+|+.+. ..++|++ .+++.-..+++++++.|++|.||||+++..-..+ +.| |++.
T Consensus 313 R-IAFmRv~SGkferGMkv~----h~rtGK~-----~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~--~IGDT~t~ 380 (528)
T COG4108 313 R-IAFMRVCSGKFERGMKVT----HVRTGKD-----VKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTI--QIGDTFTE 380 (528)
T ss_pred c-eeEEEeccccccCCceee----eeecCCc-----eEecchHhhhhhhhhhhhhccCCCeEeccCCCce--eecceeec
Confidence 4 999999999999999998 4567765 7999999999999999999999999999764444 556 8877
Q ss_pred CCCCCcccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEE-cCCCcEEEEecchhHHHHHHHHHHhh
Q 003804 462 EKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDD 540 (794)
Q Consensus 462 ~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~-~etge~il~g~GelHLei~~~~L~~~ 540 (794)
.. ...|.+++.. .|-+...|..+++....+|.+||.+|++|-- +++.. ..+++.|+...|.||+||+.+||+++
T Consensus 381 Ge---~l~f~giP~F-aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~E 455 (528)
T COG4108 381 GE---KLKFTGIPNF-APELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNE 455 (528)
T ss_pred Cc---eeeecCCCCC-CHHHHHHHhcCChHHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhh
Confidence 63 5667788776 8889999999999999999999999999985 44544 47899999999999999999999999
Q ss_pred ccCCeeeEEcCcEEE
Q 003804 541 FMGGAEIIKSDPVVS 555 (794)
Q Consensus 541 f~~~v~v~~~~p~V~ 555 (794)
| |+++.+.+..++
T Consensus 456 Y--~ve~~~e~~~~~ 468 (528)
T COG4108 456 Y--NVEAVFEPVNFS 468 (528)
T ss_pred h--CCeEEEeeccce
Confidence 9 999998754443
No 26
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=2.9e-39 Score=330.85 Aligned_cols=203 Identities=59% Similarity=0.976 Sum_probs=181.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
||++ +||+|||||||+++|++.+|.+++...|..+++|++++|++||+|++++.+++.|..... ...++++
T Consensus 2 Nvai---iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~------~~~~~~~ 72 (222)
T cd01885 2 NICI---IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEE------DKADGNE 72 (222)
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcc------cccCCCc
Confidence 7888 999999999999999999999887667778999999999999999999999999963110 0123457
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHH
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 169 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~~~ 169 (794)
+.+||||||||.+|..++..+++.+|+||+|||+.+|+..||+.+|+++...++|+|+|+||+|+.+.|++.+++++|.+
T Consensus 73 ~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~ 152 (222)
T cd01885 73 YLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQR 152 (222)
T ss_pred eEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCC-----CCceeeccCceeeeccCccceeeehhhHHHHH
Q 003804 170 FQKVIENANVIMATYEDPLL-----GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 221 (794)
++++++++|.++..+..+.. +...|+|..|||.|+|+.+||+|++++||++|
T Consensus 153 ~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~ 209 (222)
T cd01885 153 LARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIY 209 (222)
T ss_pred HHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchH
Confidence 99999999999987643311 34578999999999999999999998877766
No 27
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=3.3e-37 Score=325.59 Aligned_cols=253 Identities=29% Similarity=0.412 Sum_probs=204.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCc----eeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
||++ +||+|||||||+++|++.+|.+++ .|+ ++++|+.++|++||+|++++..++.|+
T Consensus 1 nv~i---vGh~~~GKTtL~~~Ll~~~g~~~~--~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~------------- 62 (270)
T cd01886 1 NIGI---IAHIDAGKTTTTERILYYTGRIHK--IGEVHGGGATMDFMEQERERGITIQSAATTCFWK------------- 62 (270)
T ss_pred CEEE---EcCCCCCHHHHHHHHHHHcCCCcc--cccccCCccccCCCccccCCCcCeeccEEEEEEC-------------
Confidence 5788 999999999999999999998876 232 579999999999999999999999996
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~ 165 (794)
+++++|||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+.+.+.++|.++|+||+|+. ++++++
T Consensus 63 ---~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~----~a~~~~ 135 (270)
T cd01886 63 ---DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT----GADFFR 135 (270)
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 888666
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcC--CChHhHHHHhhcccccC
Q 003804 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWGENFFD 243 (794)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~--id~~~l~~~~wg~~~~~ 243 (794)
+.+.+++.+.. .+...++|++.. ..|. +|+..+..+.|.+
T Consensus 136 ~~~~l~~~l~~------------------~~~~~~~Pisa~----------------~~f~g~vd~~~~~a~~~~~---- 177 (270)
T cd01886 136 VVEQIREKLGA------------------NPVPLQLPIGEE----------------DDFRGVVDLIEMKALYWDG---- 177 (270)
T ss_pred HHHHHHHHhCC------------------CceEEEeccccC----------------CCceEEEEccccEEEeccc----
Confidence 55555443321 112224555433 1221 5666666665622
Q ss_pred CCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc--
Q 003804 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 320 (794)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 320 (794)
...+++... +.+..+.+.+.+.+.+|+|.+++.|+++||+||++ .+++.+|+. ++|++++. ++++|+
T Consensus 178 ~~~~~~~~~-----~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~PV~~ 247 (270)
T cd01886 178 ELGEKIEET-----EIPEDLLEEAEEAREELIETLAEFDDELMEKYLEG--EEITEEEIK---AAIRKGTIANKIVPVLC 247 (270)
T ss_pred CCCceeEEe-----cCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHcCcEEEEEe
Confidence 111222222 23455667777888999999999999999999998 799999997 56777666 689997
Q ss_pred --------hHHHHHHHHhcCCCh
Q 003804 321 --------SSALLEMMIFHLPSP 335 (794)
Q Consensus 321 --------~~~LLd~i~~~lPsP 335 (794)
++.|||++++|+|||
T Consensus 248 gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 248 GSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcCCCCcCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 28
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=1.2e-33 Score=293.45 Aligned_cols=222 Identities=31% Similarity=0.413 Sum_probs=181.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCc----eeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
||++ +||+|+|||||+++|++.+|.+.+ .|+ .+++|+.++|++||+|+..+...+.|+
T Consensus 1 ni~i---~G~~~~GKTtL~~~ll~~~g~i~~--~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~------------- 62 (237)
T cd04168 1 NIGI---LAHVDAGKTTLTESLLYTSGAIRK--LGSVDKGTTRTDTMELERQRGITIFSAVASFQWE------------- 62 (237)
T ss_pred CEEE---EcCCCCCHHHHHHHHHHHcCCccc--cccccCCcccCCCchhHhhCCCceeeeeEEEEEC-------------
Confidence 5788 999999999999999999998876 332 468999999999999999999999996
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~ 165 (794)
++++++||||||.+|..++.++++.+|++++|||+.+|++.+++.+|+.+.+.++|.++|+||+|+. ++++++
T Consensus 63 ---~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~----~a~~~~ 135 (237)
T cd04168 63 ---DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA----GADLEK 135 (237)
T ss_pred ---CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc----CCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 888766
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCC
Q 003804 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (794)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~ 245 (794)
+++.+++.+.. . +...++| +|.+.. +
T Consensus 136 ~~~~i~~~~~~---~---------------~~~~~~p------~~~~~~---------------------------~--- 161 (237)
T cd04168 136 VYQEIKEKLSS---D---------------IVPMQKV------GLAPNI---------------------------C--- 161 (237)
T ss_pred HHHHHHHHHCC---C---------------eEEEECC------cEeeee---------------------------e---
Confidence 65555443321 1 1111222 121100 0
Q ss_pred CCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc----
Q 003804 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA---- 320 (794)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 320 (794)
... +...+|+|++++.|+++||+||++ .+++.+|+. .+|++++. ++++|+
T Consensus 162 --~~~------------------~~~~~l~e~vae~dd~l~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~Pv~~gs 216 (237)
T cd04168 162 --ETN------------------EIDDEFWETLAEGDDELLEKYLEG--GPIEELELD---NELSARIAKRKVFPVYHGS 216 (237)
T ss_pred --eee------------------eccHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCeEEEEEcc
Confidence 000 001478999999999999999997 899999997 56667665 689997
Q ss_pred ------hHHHHHHHHhcCCCh
Q 003804 321 ------SSALLEMMIFHLPSP 335 (794)
Q Consensus 321 ------~~~LLd~i~~~lPsP 335 (794)
++.|||++++|+|||
T Consensus 217 a~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 217 ALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred ccCCcCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 29
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.1e-32 Score=308.96 Aligned_cols=295 Identities=21% Similarity=0.319 Sum_probs=217.8
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
+.+.++|++ +||+|||||||+++|++..|.++.........+|..++|++||+|++++...+.++
T Consensus 9 ~~~~~~i~i---~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~------------ 73 (409)
T CHL00071 9 KKPHVNIGT---IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE------------ 73 (409)
T ss_pred CCCeEEEEE---ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC------------
Confidence 456789999 99999999999999999988876432222357899999999999999988776663
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccchhccCCCH
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDG 163 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~~~~~~~~~ 163 (794)
+..++|||||||.+|..++.++++.+|+|++|||+.+|+..||++++..+...++| .|+++||||+. . .
T Consensus 74 ----~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~----~--~ 143 (409)
T CHL00071 74 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV----D--D 143 (409)
T ss_pred ----CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC----C--H
Confidence 78999999999999999999999999999999999999999999999999999999 55899999987 3 3
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccC
Q 003804 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (794)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~ 243 (794)
++.++.+ .++++..+..+. +.+...++.+.|++.||+....+
T Consensus 144 ~~~~~~~---~~~l~~~l~~~~--------~~~~~~~ii~~Sa~~g~n~~~~~--------------------------- 185 (409)
T CHL00071 144 EELLELV---ELEVRELLSKYD--------FPGDDIPIVSGSALLALEALTEN--------------------------- 185 (409)
T ss_pred HHHHHHH---HHHHHHHHHHhC--------CCCCcceEEEcchhhcccccccC---------------------------
Confidence 3433333 334444444321 11112256778888887531100
Q ss_pred CCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHH
Q 003804 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (794)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 323 (794)
. .+. .. ...|......
T Consensus 186 --~-~~~-----------------------------~~--------------------------------~~~w~~~~~~ 201 (409)
T CHL00071 186 --P-KIK-----------------------------RG--------------------------------ENKWVDKIYN 201 (409)
T ss_pred --c-ccc-----------------------------cc--------------------------------CCchhhhHHH
Confidence 0 000 00 0012222356
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEE
Q 003804 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (794)
Q Consensus 324 LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v 403 (794)
||+++.+++|+|.. +.+.||.++|++++..++.|. ++++||++|+++.||.|.+
T Consensus 202 ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~v~~~~g~G~-Vv~G~V~sG~l~~Gd~v~i 255 (409)
T CHL00071 202 LMDAVDSYIPTPER-------------------------DTDKPFLMAIEDVFSITGRGT-VATGRIERGTVKVGDTVEI 255 (409)
T ss_pred HHHHHHhhCCCCCC-------------------------CCCCCEEEEEEEEEEeCCCeE-EEEEEEecCEEeeCCEEEE
Confidence 89999998888731 245799999999999888887 8999999999999999987
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eeecCC
Q 003804 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (794)
Q Consensus 404 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~--gl~~~~~~tg-Tl~~~~ 463 (794)
++++ .+ ...+|.+|... .+++++|.|||+|++. |++....+.| +|++.+
T Consensus 256 ~p~~--~~-----~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 256 VGLR--ET-----KTTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred eeCC--CC-----cEEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 6532 11 12588888763 2578999999999664 6654334667 777653
No 30
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-32 Score=291.84 Aligned_cols=287 Identities=26% Similarity=0.391 Sum_probs=212.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (794)
.+.+|+++ +||+|||||||+.+|||..|.++.. ..|+ ++.||+.++||+||+||+.+..+|+
T Consensus 5 Kph~nl~~---iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 5 KPHLNLVF---IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CCceEEEE---EcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 45689999 9999999999999999999999874 2454 5799999999999999999999888
Q ss_pred eecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-------cchhHHHHHHHHHhcCC
Q 003804 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (794)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-------v~~qt~~~~~~~~~~~~ 143 (794)
.+ .+.++|||||||.||..+++.++++||.|||||||..| +..||+++.-.+...|+
T Consensus 82 t~----------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi 145 (428)
T COG5256 82 TD----------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI 145 (428)
T ss_pred cC----------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC
Confidence 75 78899999999999999999999999999999999998 99999999999999999
Q ss_pred c-cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHh
Q 003804 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (794)
Q Consensus 144 ~-~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~ 222 (794)
. .|+++||||.+ .+|. ++|+++..+++.++..+...+. ++.|.| .||+.|-+.+-.
T Consensus 146 ~~lIVavNKMD~v----~wde----~rf~ei~~~v~~l~k~~G~~~~-~v~FIP-------iSg~~G~Nl~~~------- 202 (428)
T COG5256 146 KQLIVAVNKMDLV----SWDE----ERFEEIVSEVSKLLKMVGYNPK-DVPFIP-------ISGFKGDNLTKK------- 202 (428)
T ss_pred ceEEEEEEccccc----ccCH----HHHHHHHHHHHHHHHHcCCCcc-CCeEEe-------cccccCCccccc-------
Confidence 6 56899999999 7774 4577777777775544322211 223333 455544322100
Q ss_pred hhcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHH
Q 003804 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (794)
Q Consensus 223 ~~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el 302 (794)
.+ ..-| |+ .
T Consensus 203 -------s~--~~pW----Y~--------G-------------------------------------------------- 211 (428)
T COG5256 203 -------SE--NMPW----YK--------G-------------------------------------------------- 211 (428)
T ss_pred -------Cc--CCcC----cc--------C--------------------------------------------------
Confidence 00 0111 11 0
Q ss_pred HHhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003804 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (794)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g 382 (794)
..||+++- .+..|.. .-+.||+.-|..++.....|
T Consensus 212 -------------------pTLleaLd-~~~~p~~-------------------------~~d~Plr~pI~~v~~i~~~g 246 (428)
T COG5256 212 -------------------PTLLEALD-QLEPPER-------------------------PLDKPLRLPIQDVYSISGIG 246 (428)
T ss_pred -------------------ChHHHHHh-ccCCCCC-------------------------CCCCCeEeEeeeEEEecCCc
Confidence 12455553 4444410 13589999999998877778
Q ss_pred cceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-ee
Q 003804 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TL 459 (794)
Q Consensus 383 ~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl 459 (794)
. +..+||.+|.|++||.|++...+ .. -.|+.+.. +.++++.+.+||.+.+ .|++..-.+.| .+
T Consensus 247 t-v~vGrVEsG~i~~g~~v~~~p~~----~~-----~evksie~----~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~ 312 (428)
T COG5256 247 T-VPVGRVESGVIKPGQKVTFMPAG----VV-----GEVKSIEM----HHEEISQAEPGDNVGFNVRGVEKNDIRRGDVI 312 (428)
T ss_pred e-EEEEEEeeeeeccCCEEEEecCc----ce-----EEEeeeee----cccccccCCCCCeEEEEecCCchhccCCccEe
Confidence 7 88999999999999999987543 11 35666653 3788999999999766 46554333667 44
Q ss_pred ecCCC
Q 003804 460 TNEKE 464 (794)
Q Consensus 460 ~~~~~ 464 (794)
++..+
T Consensus 313 ~~~~n 317 (428)
T COG5256 313 GHSDN 317 (428)
T ss_pred ccCCC
Confidence 44433
No 31
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=6.9e-33 Score=292.48 Aligned_cols=245 Identities=22% Similarity=0.261 Sum_probs=186.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCccccc-------CCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV-------AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~-------~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
..||++ +||+|+|||||+++|++.+|.+++.. .| .+++|+.+.|++||+|+..+...+.|.
T Consensus 2 ~Rni~i---vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~-~t~~D~~~~e~~rg~si~~~~~~~~~~-------- 69 (267)
T cd04169 2 RRTFAI---ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRK-HATSDWMEIEKQRGISVTSSVMQFEYR-------- 69 (267)
T ss_pred ccEEEE---EcCCCCCHHHHHHHHHHhcCCcccCceecccccCC-CccCCCcHHHHhCCCCeEEEEEEEeeC--------
Confidence 358899 99999999999999999999988631 12 357999999999999999999999996
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccC
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 160 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~ 160 (794)
++++||||||||.+|..++..+++.+|++|+|+|+..|++.+++.+|+.+...++|+++|+||+|+. +
T Consensus 70 --------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~----~ 137 (267)
T cd04169 70 --------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE----G 137 (267)
T ss_pred --------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC----C
Confidence 8999999999999999999999999999999999999999999999999988999999999999998 8
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcC--CChHhHHHHhhc
Q 003804 161 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWG 238 (794)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~--id~~~l~~~~wg 238 (794)
++..++++.+++.+. . .+...++|++.+ ..|. +|+..+..+.|.
T Consensus 138 a~~~~~~~~l~~~l~-------~-----------~~~~~~~Pi~~~----------------~~~~g~vd~~~~~a~~~~ 183 (267)
T cd04169 138 RDPLELLDEIEEELG-------I-----------DCTPLTWPIGMG----------------KDFKGVYDRRTGEVELYD 183 (267)
T ss_pred CCHHHHHHHHHHHHC-------C-----------CceeEEecccCC----------------CceEEEEEhhhCEEEEec
Confidence 875555544444322 1 111235666554 2222 566655555441
Q ss_pred ccccCCCCC-ceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hc
Q 003804 239 ENFFDPATR-KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QT 316 (794)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~ 316 (794)
+...+ .....+ .+. .+.|.+++.|+++||+|+++ .+++.+++. ..+.+++. .+
T Consensus 184 ----~~~~~~~~~~~~-----~p~-----------~~~e~~~e~~~~l~e~~~e~--~~~~~~~~~---~~~~~~~~~~~ 238 (267)
T cd04169 184 ----RGAGGATIAPEE-----TKG-----------LDDPKLDELGGDLAEQLREE--LELLEGAGP---EFDQEAFLAGE 238 (267)
T ss_pred ----CCCCCccceecc-----CCc-----------ccHHHHHhcCHHHHHHHhCC--CccchhhhH---HHhHHHHHcCC
Confidence 11111 111111 011 12378889999999999997 677777754 34445544 57
Q ss_pred cccc----------hHHHHHHHHhcCCCh
Q 003804 317 WLPA----------SSALLEMMIFHLPSP 335 (794)
Q Consensus 317 ~~P~----------~~~LLd~i~~~lPsP 335 (794)
++|+ ++.|||+|++|+|+|
T Consensus 239 ~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 239 LTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred EEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 9997 799999999999998
No 32
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=9.3e-32 Score=300.15 Aligned_cols=284 Identities=22% Similarity=0.315 Sum_probs=205.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.+||++ +||+|||||||+++|+...+...+......+.+|..++|++||+|++++...+.+
T Consensus 10 k~~~ni~i---~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-------------- 72 (394)
T PRK12736 10 KPHVNIGT---IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-------------- 72 (394)
T ss_pred CCeeEEEE---EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC--------------
Confidence 45789999 9999999999999998654321110000123689999999999999987766554
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccchhccCCCHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~~~~~~~~~~ 164 (794)
+++.++|||||||.+|..++.++++.+|++++|||+.+|+..||+++|..+...++|. |+++||||+. . .+
T Consensus 73 --~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~----~--~~ 144 (394)
T PRK12736 73 --EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV----D--DE 144 (394)
T ss_pred --CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc----c--hH
Confidence 3678999999999999999999999999999999999999999999999999999994 6899999986 2 23
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCC
Q 003804 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~ 244 (794)
+.++. +.++++..+..+. +.+...++.+.|++.|+.-
T Consensus 145 ~~~~~---i~~~i~~~l~~~~--------~~~~~~~ii~vSa~~g~~~-------------------------------- 181 (394)
T PRK12736 145 ELLEL---VEMEVRELLSEYD--------FPGDDIPVIRGSALKALEG-------------------------------- 181 (394)
T ss_pred HHHHH---HHHHHHHHHHHhC--------CCcCCccEEEeeccccccC--------------------------------
Confidence 33322 2234444443211 1111123445555433100
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHH
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (794)
. ..|.+.+..|
T Consensus 182 -~--------------------------------------------------------------------~~~~~~i~~L 192 (394)
T PRK12736 182 -D--------------------------------------------------------------------PKWEDAIMEL 192 (394)
T ss_pred -C--------------------------------------------------------------------CcchhhHHHH
Confidence 0 0122223568
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
++++.+++|.|.. +.++||.++|++++..++.|. ++++||++|+|+.||.|+++
T Consensus 193 l~~l~~~lp~~~~-------------------------~~~~p~r~~I~~~~~~~g~G~-Vv~G~v~~G~l~~gd~v~i~ 246 (394)
T PRK12736 193 MDAVDEYIPTPER-------------------------DTDKPFLMPVEDVFTITGRGT-VVTGRVERGTVKVGDEVEIV 246 (394)
T ss_pred HHHHHHhCCCCCC-------------------------CCCCCeEEEEEEEEecCCcEE-EEEEEEeecEEecCCEEEEe
Confidence 8899999997731 235799999999999998887 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~~ 463 (794)
+.+. + ...+|.+|.. ...++++|.|||++++ .|++....+.| +||+++
T Consensus 247 p~~~--~-----~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 247 GIKE--T-----QKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred cCCC--C-----eEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 5321 1 1358888876 3568999999999966 67754334667 777754
No 33
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.4e-31 Score=301.37 Aligned_cols=288 Identities=22% Similarity=0.304 Sum_probs=209.0
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc----------CCc-----eeecCChhhHhhhCcccccceEEE
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISL 69 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----------~G~-----~~~~D~~~~E~~rgiTi~~~~~~~ 69 (794)
+.+.+||++ +||+|||||||+++||+.+|.+++.. .|+ ++++|..++||+||+|++.+...+
T Consensus 4 ~k~~~ni~i---~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~ 80 (447)
T PLN00043 4 EKVHINIVV---IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF 80 (447)
T ss_pred CCceEEEEE---EecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe
Confidence 466789999 99999999999999999999887531 111 358999999999999999988887
Q ss_pred EeecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-------chhHHHHHHHHHhcC
Q 003804 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGER 142 (794)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-------~~qt~~~~~~~~~~~ 142 (794)
.|. ++.+||||||||.||..++..+++.+|+||+|||+.+|. ..||+++|.++...+
T Consensus 81 ~~~----------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g 144 (447)
T PLN00043 81 ETT----------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG 144 (447)
T ss_pred cCC----------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC
Confidence 774 899999999999999999999999999999999999983 279999999999999
Q ss_pred Ccc-EEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHH
Q 003804 143 IRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (794)
Q Consensus 143 ~~~-iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 221 (794)
+|. |+++||||+. .. +...+++.+++++++..+..+. +.+....+...|++.|++..-.
T Consensus 145 i~~iIV~vNKmD~~----~~--~~~~~~~~~i~~ei~~~l~~~g--------~~~~~~~~ipiSa~~G~ni~~~------ 204 (447)
T PLN00043 145 VKQMICCCNKMDAT----TP--KYSKARYDEIVKEVSSYLKKVG--------YNPDKIPFVPISGFEGDNMIER------ 204 (447)
T ss_pred CCcEEEEEEcccCC----ch--hhhHHHHHHHHHHHHHHHHHcC--------CCcccceEEEEecccccccccc------
Confidence 975 6789999986 22 2223457777777777765422 1122223444566555432000
Q ss_pred hhhcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHH
Q 003804 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (794)
Q Consensus 222 ~~~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~e 301 (794)
.. ..-| | .+
T Consensus 205 --------~~--~~~W-------------------------------------y---------------~g--------- 213 (447)
T PLN00043 205 --------ST--NLDW-------------------------------------Y---------------KG--------- 213 (447)
T ss_pred --------cc--CCcc-------------------------------------c---------------ch---------
Confidence 00 0001 0 00
Q ss_pred HHHhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCC
Q 003804 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (794)
Q Consensus 302 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~ 381 (794)
..||+++.+ +|.|.. +.+.|+.+.|..++..++.
T Consensus 214 --------------------~tLl~~l~~-i~~p~~-------------------------~~~~plr~~I~~v~~~~g~ 247 (447)
T PLN00043 214 --------------------PTLLEALDQ-INEPKR-------------------------PSDKPLRLPLQDVYKIGGI 247 (447)
T ss_pred --------------------HHHHHHHhh-cCCCcc-------------------------ccCCCcEEEEEEEEEeCCc
Confidence 235566544 344410 1357899999999887877
Q ss_pred CcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-e
Q 003804 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-T 458 (794)
Q Consensus 382 g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~--gl~~~~~~tg-T 458 (794)
|. +..+||.+|+|+.||.|.+... +. ..+|..|.. ...++++|.|||.+++. +++....+.| .
T Consensus 248 G~-vv~G~V~~G~l~~Gd~v~~~P~----~~-----~~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~v 313 (447)
T PLN00043 248 GT-VPVGRVETGVIKPGMVVTFGPT----GL-----TTEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYV 313 (447)
T ss_pred EE-EEEEEEECCEEeeCCEEEEcCC----CC-----EEEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccE
Confidence 76 8999999999999999997642 22 258888875 35789999999998874 5433223567 6
Q ss_pred eecC
Q 003804 459 LTNE 462 (794)
Q Consensus 459 l~~~ 462 (794)
|++.
T Consensus 314 l~~~ 317 (447)
T PLN00043 314 ASNS 317 (447)
T ss_pred EccC
Confidence 6654
No 34
>PRK12735 elongation factor Tu; Reviewed
Probab=99.98 E-value=7.1e-31 Score=293.26 Aligned_cols=286 Identities=20% Similarity=0.285 Sum_probs=207.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +||+|||||||+++|++..+..........+.+|..++|++||+|++++...+.+.
T Consensus 10 ~~~~~i~i---iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~------------- 73 (396)
T PRK12735 10 KPHVNVGT---IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA------------- 73 (396)
T ss_pred CCeEEEEE---ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC-------------
Confidence 45789999 99999999999999998544221110111247899999999999999877665553
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccchhccCCCHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~~~~~~~~~~ 164 (794)
+..++|||||||.+|..++.+++..+|+|++|||+.+|+..||++++..+...++|.+ +++||||+. . .+
T Consensus 74 ---~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~----~--~~ 144 (396)
T PRK12735 74 ---NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D--DE 144 (396)
T ss_pred ---CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc----c--hH
Confidence 6789999999999999999999999999999999999999999999999999999977 579999986 3 23
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCC
Q 003804 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~ 244 (794)
+.++. +.++++..+..+. +.+...++.+.|+..||...- ..
T Consensus 145 ~~~~~---~~~ei~~~l~~~~--------~~~~~~~ii~~Sa~~g~n~~~-------------------~~--------- 185 (396)
T PRK12735 145 ELLEL---VEMEVRELLSKYD--------FPGDDTPIIRGSALKALEGDD-------------------DE--------- 185 (396)
T ss_pred HHHHH---HHHHHHHHHHHcC--------CCcCceeEEecchhccccCCC-------------------CC---------
Confidence 33332 3334444443321 111122455667766653100 00
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHH
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (794)
.|.+....|
T Consensus 186 -----------------------------------------------------------------------~w~~~~~~L 194 (396)
T PRK12735 186 -----------------------------------------------------------------------EWEAKILEL 194 (396)
T ss_pred -----------------------------------------------------------------------cccccHHHH
Confidence 111112458
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
|+++.+++|.|.. +.++||.++|..++..++.|. ++.+||.+|+|+.||.|+++
T Consensus 195 l~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~Gt-vv~G~v~~G~i~~gd~v~i~ 248 (396)
T PRK12735 195 MDAVDSYIPEPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIVKVGDEVEIV 248 (396)
T ss_pred HHHHHhcCCCCCc-------------------------cCCCCeEEEEEEEEecCCceE-EEEEEEEecEEeCCCEEEEe
Confidence 8888889987731 235789999999998888886 89999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~~ 463 (794)
+.+ .. ...+|..|.. ..+++++|.|||.+++ .|++....+.| +||+.+
T Consensus 249 p~~--~~-----~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 249 GIK--ET-----QKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred cCC--CC-----eEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 532 11 1257888775 3578999999999888 57654334567 777753
No 35
>PLN03126 Elongation factor Tu; Provisional
Probab=99.98 E-value=6.8e-31 Score=296.86 Aligned_cols=295 Identities=22% Similarity=0.328 Sum_probs=214.2
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
+.+.+||++ +||+|||||||+++|++..|.+......+...+|..++|++||+|++.+...+.++
T Consensus 78 ~k~~~ni~i---iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~------------ 142 (478)
T PLN03126 78 KKPHVNIGT---IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE------------ 142 (478)
T ss_pred cCCeeEEEE---ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC------------
Confidence 456789999 99999999999999999988776543333468999999999999999988877774
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccchhccCCCH
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDG 163 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~~~~~~~~~ 163 (794)
+++++|||||||.+|..++..+++.+|+|++|||+.+|+..||+++|..+...++| +|+++||||+. +.
T Consensus 143 ----~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~------~~ 212 (478)
T PLN03126 143 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV------DD 212 (478)
T ss_pred ----CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc------CH
Confidence 78999999999999999999999999999999999999999999999999999999 56899999987 33
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccC
Q 003804 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (794)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~ 243 (794)
++.++. +.++++..+..+. |.+...++.+.|++.||..... +
T Consensus 213 ~~~~~~---i~~~i~~~l~~~g--------~~~~~~~~vp~Sa~~g~n~~~~-----------------------~---- 254 (478)
T PLN03126 213 EELLEL---VELEVRELLSSYE--------FPGDDIPIISGSALLALEALME-----------------------N---- 254 (478)
T ss_pred HHHHHH---HHHHHHHHHHhcC--------CCcCcceEEEEEcccccccccc-----------------------c----
Confidence 444333 3334555554321 1111224555677777642100 0
Q ss_pred CCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHH
Q 003804 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (794)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 323 (794)
..... .+. .|+.....
T Consensus 255 ---~~~~~-----------------------------g~~--------------------------------~wy~~i~~ 270 (478)
T PLN03126 255 ---PNIKR-----------------------------GDN--------------------------------KWVDKIYE 270 (478)
T ss_pred ---ccccc-----------------------------CCC--------------------------------chhhhHHH
Confidence 00000 000 01100134
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEE
Q 003804 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (794)
Q Consensus 324 LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v 403 (794)
||+++.++.|.|.. +.+.|+.++|..++..++.|. +..+||.+|+++.||.|++
T Consensus 271 Ll~~l~~~~~~p~r-------------------------~~~~p~r~~I~~vf~v~g~Gt-Vv~G~V~sG~i~~Gd~v~i 324 (478)
T PLN03126 271 LMDAVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGTVKVGETVDI 324 (478)
T ss_pred HHHHHHHhCCCCCC-------------------------ccccceeeEEEEEEEeCCceE-EEEEEEEcCeEecCCEEEE
Confidence 78888887776621 134789999999998888886 8999999999999999998
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003804 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (794)
Q Consensus 404 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~~ 463 (794)
.+. +. ....+|..|... ..++++|.|||.+++ .|++....+.| .|++.+
T Consensus 325 ~p~----~~---~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 325 VGL----RE---TRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred ecC----CC---ceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 642 11 123578888753 478999999999888 56655333566 677653
No 36
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.98 E-value=1.4e-31 Score=284.38 Aligned_cols=252 Identities=26% Similarity=0.359 Sum_probs=195.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccc---cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~---~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
||++ +||+|+|||||+++|++..|.+.+. ..| ++.+|+.++|++|++|+.++...+.|.
T Consensus 1 ni~i---vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~r~~ti~~~~~~~~~~-------------- 62 (268)
T cd04170 1 NIAL---VGHSGSGKTTLAEALLYATGAIDRLGSVEDG-TTVSDYDPEEIKRKMSISTSVAPLEWK-------------- 62 (268)
T ss_pred CEEE---ECCCCCCHHHHHHHHHHhcCCCccCCeecCC-cccCCCCHHHHhhcccccceeEEEEEC--------------
Confidence 5788 9999999999999999999987652 122 467899999999999999999999885
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++.+++||||||.+|..++..+++.+|++++|+|+..|...++..+|+++...++|.++|+||+|+. +.+.++.
T Consensus 63 --~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~----~~~~~~~ 136 (268)
T cd04170 63 --GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE----RADFDKT 136 (268)
T ss_pred --CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC----CCCHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999998 7775555
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccC--ccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~ 244 (794)
.+.+++.+.. .+...++|...+ +.|. +|......+.|.+
T Consensus 137 ~~~l~~~~~~------------------~~~~~~ip~~~~~~~~~~----------------vd~~~~~~~~~~~----- 177 (268)
T cd04170 137 LAALQEAFGR------------------PVVPLQLPIGEGDDFKGV----------------VDLLTEKAYIYSP----- 177 (268)
T ss_pred HHHHHHHhCC------------------CeEEEEecccCCCceeEE----------------EEcccCEEEEccC-----
Confidence 4444443221 011123444332 1111 3333333333421
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc---
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA--- 320 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 320 (794)
.+ .... .+.+..+.+.+.+.+.+|+|.+++.|+++||+||++ .+++.+++. ++|++++. +.++|+
T Consensus 178 ~~-~~~~-----~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~--~~~~~~~l~---~~l~~~~~~~~~~pv~~g 246 (268)
T cd04170 178 GA-PSEE-----IEIPEELKEEVAEAREELLEAVAETDDELMEKYLEG--GELTEEELH---AGLRRALRAGLLVPVLCG 246 (268)
T ss_pred CC-ccee-----ccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEEe
Confidence 11 1111 123455666677788999999999999999999997 789999997 56666665 578886
Q ss_pred -------hHHHHHHHHhcCCCh
Q 003804 321 -------SSALLEMMIFHLPSP 335 (794)
Q Consensus 321 -------~~~LLd~i~~~lPsP 335 (794)
++.|||++.+|+|+|
T Consensus 247 Sa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 247 SALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred eCCCCcCHHHHHHHHHHhCCCC
Confidence 799999999999998
No 37
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.98 E-value=5.6e-31 Score=296.86 Aligned_cols=288 Identities=23% Similarity=0.305 Sum_probs=207.1
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc----------CC--c---eeecCChhhHhhhCcccccceEEE
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG--D---VRMTDTRQDEAERGITIKSTGISL 69 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----------~G--~---~~~~D~~~~E~~rgiTi~~~~~~~ 69 (794)
..+.+||++ +||+|||||||+++||+.+|.+++.. .| + ++.+|..++|++||+|++.+...+
T Consensus 4 ~k~~~nv~i---~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 4 EKTHINLVV---IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred CCceEEEEE---EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 356789999 99999999999999999999887531 12 2 247999999999999999998887
Q ss_pred EeecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-------chhHHHHHHHHHhcC
Q 003804 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGER 142 (794)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-------~~qt~~~~~~~~~~~ 142 (794)
.|+ ++.++|||||||.+|..++..+++.+|+||+|||+.+|+ ..||+++|.++...+
T Consensus 81 ~~~----------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g 144 (446)
T PTZ00141 81 ETP----------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG 144 (446)
T ss_pred ccC----------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC
Confidence 774 899999999999999999999999999999999999998 589999999999999
Q ss_pred Ccc-EEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHH
Q 003804 143 IRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (794)
Q Consensus 143 ~~~-iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 221 (794)
+|. |+++||||+. ..+++ .+++.++.+++...+.... +.+...++...|++.|.+..-.
T Consensus 145 i~~iiv~vNKmD~~----~~~~~--~~~~~~i~~~i~~~l~~~g--------~~~~~~~~ipiSa~~g~ni~~~------ 204 (446)
T PTZ00141 145 VKQMIVCINKMDDK----TVNYS--QERYDEIKKEVSAYLKKVG--------YNPEKVPFIPISGWQGDNMIEK------ 204 (446)
T ss_pred CCeEEEEEEccccc----cchhh--HHHHHHHHHHHHHHHHhcC--------CCcccceEEEeecccCCCcccC------
Confidence 986 5899999965 32211 2346666666666654321 1111223444566544321000
Q ss_pred hhhcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHH
Q 003804 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (794)
Q Consensus 222 ~~~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~e 301 (794)
.. ...|
T Consensus 205 --------~~--~~~W---------------------------------------------------------------- 210 (446)
T PTZ00141 205 --------SD--NMPW---------------------------------------------------------------- 210 (446)
T ss_pred --------CC--CCcc----------------------------------------------------------------
Confidence 00 0001
Q ss_pred HHHhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCC
Q 003804 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (794)
Q Consensus 302 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~ 381 (794)
.-. ..|++++.++ +.|.. +.+.|+.+.|..++..++.
T Consensus 211 ----------------y~G-~tL~~~l~~~-~~~~~-------------------------~~~~p~r~~I~~v~~v~g~ 247 (446)
T PTZ00141 211 ----------------YKG-PTLLEALDTL-EPPKR-------------------------PVDKPLRLPLQDVYKIGGI 247 (446)
T ss_pred ----------------cch-HHHHHHHhCC-CCCCc-------------------------CCCCCeEEEEEEEEecCCc
Confidence 000 2355565443 33410 1347899999999888877
Q ss_pred CcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-e
Q 003804 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-T 458 (794)
Q Consensus 382 g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~--gl~~~~~~tg-T 458 (794)
|. +..+||.+|+|+.||.|.+++.+ . ..+|.+|... ..++++|.|||.+++. +++......| .
T Consensus 248 Gt-vv~G~V~~G~l~~Gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~aG~~v~i~L~~i~~~~v~rG~v 313 (446)
T PTZ00141 248 GT-VPVGRVETGILKPGMVVTFAPSG----V-----TTEVKSVEMH----HEQLAEAVPGDNVGFNVKNVSVKDIKRGYV 313 (446)
T ss_pred eE-EEEEEEEcceEecCCEEEEccCC----c-----EEEEEEEEec----CcccCEECCCCEEEEEECCCCHHHcCCceE
Confidence 76 89999999999999999986422 1 2588888753 4689999999998884 4433223556 5
Q ss_pred eecC
Q 003804 459 LTNE 462 (794)
Q Consensus 459 l~~~ 462 (794)
|++.
T Consensus 314 l~~~ 317 (446)
T PTZ00141 314 ASDS 317 (446)
T ss_pred EecC
Confidence 6654
No 38
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=1.8e-30 Score=290.13 Aligned_cols=283 Identities=19% Similarity=0.301 Sum_probs=201.7
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +||+|||||||+++|++......+......+.+|..++|++||+|++++...+.+
T Consensus 10 ~~~~~i~i---~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-------------- 72 (394)
T TIGR00485 10 KPHVNIGT---IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-------------- 72 (394)
T ss_pred CceEEEEE---EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC--------------
Confidence 46789999 9999999999999998653211110011124799999999999999987766554
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccchhccCCCHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~~~~~~~~~~ 164 (794)
+++.++|||||||.+|..++.++++.+|++++|||+.+|+..||++++..+...++|.+ +++||||+. +.+
T Consensus 73 --~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~------~~~ 144 (394)
T TIGR00485 73 --ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV------DDE 144 (394)
T ss_pred --CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC------CHH
Confidence 37889999999999999999999999999999999999999999999999999999977 689999987 333
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCC
Q 003804 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~ 244 (794)
+.++ .+.++++..+..+.. .+...++.+.|++.|+.
T Consensus 145 ~~~~---~~~~~i~~~l~~~~~--------~~~~~~ii~vSa~~g~~--------------------------------- 180 (394)
T TIGR00485 145 ELLE---LVEMEVRELLSEYDF--------PGDDTPIIRGSALKALE--------------------------------- 180 (394)
T ss_pred HHHH---HHHHHHHHHHHhcCC--------CccCccEEECccccccc---------------------------------
Confidence 3332 233344444432211 11111344445433210
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHH
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (794)
+. . + | ++ ....|
T Consensus 181 -----------g~---~--------~-~--~~-------------------------------------------~~~~l 192 (394)
T TIGR00485 181 -----------GD---A--------E-W--EA-------------------------------------------KILEL 192 (394)
T ss_pred -----------cC---C--------c-h--hH-------------------------------------------hHHHH
Confidence 00 0 0 0 00 01347
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
|+++.+++|.|.. +.++||.++|+.++..++.|. ++++||.+|+|+.||.|++.
T Consensus 193 l~~l~~~~~~~~~-------------------------~~~~p~r~~V~~vf~~~g~G~-Vv~G~v~~G~l~~gd~v~i~ 246 (394)
T TIGR00485 193 MDAVDEYIPTPER-------------------------ETDKPFLMPIEDVFSITGRGT-VVTGRVERGIVKVGEEVEIV 246 (394)
T ss_pred HHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEEeeEEeCCCEEEEe
Confidence 8888888887731 235789999999999888887 99999999999999999986
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecC
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~ 462 (794)
+.. .+. ..+|+.|... ..++++|.|||.+++ .|++....+.| +|++.
T Consensus 247 p~~--~~~-----~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~ 296 (394)
T TIGR00485 247 GLK--DTR-----KTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKP 296 (394)
T ss_pred cCC--CCc-----EEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecC
Confidence 521 111 2578888762 477899999999976 67644333567 77775
No 39
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-31 Score=273.99 Aligned_cols=284 Identities=22% Similarity=0.341 Sum_probs=203.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHH---HHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSL---VAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~L---l~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
..+|.+|+ +||+|||||||+-++ |...|...- -+..-.|..|+|+.|||||.++.+.++..
T Consensus 52 KPHvNVGT-IGHVDHGKTTLTaAITkila~~g~A~~---~kydeID~APEEkaRGITIn~aHveYeTa------------ 115 (449)
T KOG0460|consen 52 KPHVNVGT-IGHVDHGKTTLTAAITKILAEKGGAKF---KKYDEIDKAPEEKARGITINAAHVEYETA------------ 115 (449)
T ss_pred CCcccccc-cccccCCchhHHHHHHHHHHhcccccc---ccHhhhhcChhhhhccceEeeeeeeeecc------------
Confidence 44556666 999999999999987 333332211 01235688899999999999887655543
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccchhccCCCH
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDG 163 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~~~~~~~~~ 163 (794)
..++--+|||||.||+++|+.+..+.|||||||.|++|..+||++++-.+.+-|++.| +|+||.|.+ +.
T Consensus 116 ----~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V------~d 185 (449)
T KOG0460|consen 116 ----KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLV------DD 185 (449)
T ss_pred ----ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEeccccc------CC
Confidence 6788899999999999999999999999999999999999999999999999999866 799999987 32
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccC
Q 003804 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (794)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~ 243 (794)
+++.+-.+ -+++..|..|..+ | ...+|..||++-. +-|
T Consensus 186 ~e~leLVE---mE~RElLse~gf~--G------d~~PvI~GSAL~A--------------------------Leg----- 223 (449)
T KOG0460|consen 186 PEMLELVE---MEIRELLSEFGFD--G------DNTPVIRGSALCA--------------------------LEG----- 223 (449)
T ss_pred HHHHHHHH---HHHHHHHHHcCCC--C------CCCCeeecchhhh--------------------------hcC-----
Confidence 33332221 1445555544322 2 2346777776310 000
Q ss_pred CCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHH
Q 003804 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (794)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 323 (794)
.+++.- . .+ +..
T Consensus 224 -------------------------------------~~peig--------~-----------~a------------I~k 235 (449)
T KOG0460|consen 224 -------------------------------------RQPEIG--------L-----------EA------------IEK 235 (449)
T ss_pred -------------------------------------CCcccc--------H-----------HH------------HHH
Confidence 000000 0 00 245
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEE
Q 003804 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (794)
Q Consensus 324 LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v 403 (794)
|||++.+|+|.|.. +-+.||+.-|-.++..+.+|. ++.+|+..|+|++|+++-+
T Consensus 236 LldavDsyip~P~R-------------------------~~~~pFl~pie~vfsI~GRGT-VvtGrlERG~lKkG~e~ei 289 (449)
T KOG0460|consen 236 LLDAVDSYIPTPER-------------------------DLDKPFLLPIEDVFSIPGRGT-VVTGRLERGVLKKGDEVEI 289 (449)
T ss_pred HHHHHhccCCCccc-------------------------ccCCCceeehhheeeecCCce-EEEEEEeecccccCCEEEE
Confidence 99999999999931 245789999999989899998 9999999999999999999
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCCC
Q 003804 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEKE 464 (794)
Q Consensus 404 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~~~ 464 (794)
.|.|-+ - +..|+.|-.+ ...+++|.|||-+++ +|++.--.+-| .++.+..
T Consensus 290 vG~~~~--l-----kttvtgiemF----~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 290 VGHNKT--L-----KTTVTGIEMF----RKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred eccCcc--e-----eeEeehHHHH----HHHHHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 886522 1 2355555443 356899999999865 67776545667 6665543
No 40
>PRK00049 elongation factor Tu; Reviewed
Probab=99.97 E-value=4.4e-30 Score=286.66 Aligned_cols=286 Identities=20% Similarity=0.303 Sum_probs=204.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.+||++ +||+|||||||+++|++...............+|..++|++||+|++++...+.+
T Consensus 10 ~~~~ni~i---iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-------------- 72 (396)
T PRK00049 10 KPHVNVGT---IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-------------- 72 (396)
T ss_pred CCEEEEEE---EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC--------------
Confidence 45789999 9999999999999999753211110011123789999999999999988766554
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccchhccCCCHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~~~~~~~~~~ 164 (794)
++..++|||||||.+|..++..++..+|++++|||+.+|+..||+++|..+...++|.+ +++||||+. . .+
T Consensus 73 --~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~----~--~~ 144 (396)
T PRK00049 73 --EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D--DE 144 (396)
T ss_pred --CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc----c--hH
Confidence 37889999999999999999999999999999999999999999999999999999986 589999987 3 23
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCC
Q 003804 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~ 244 (794)
+.++ .+.++++..+..+. +.+...++.+.|++.||...
T Consensus 145 ~~~~---~~~~~i~~~l~~~~--------~~~~~~~iv~iSa~~g~~~~------------------------------- 182 (396)
T PRK00049 145 ELLE---LVEMEVRELLSKYD--------FPGDDTPIIRGSALKALEGD------------------------------- 182 (396)
T ss_pred HHHH---HHHHHHHHHHHhcC--------CCccCCcEEEeecccccCCC-------------------------------
Confidence 3332 23334444443211 11112234455665543200
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHH
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (794)
.. ..|......|
T Consensus 183 ~~--------------------------------------------------------------------~~w~~~~~~l 194 (396)
T PRK00049 183 DD--------------------------------------------------------------------EEWEKKILEL 194 (396)
T ss_pred Cc--------------------------------------------------------------------ccccccHHHH
Confidence 00 0011112458
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
|+++.+++|.|.. +.+.||.+.|..++..++.|. ++.+||.+|++++||.|.++
T Consensus 195 l~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~G~-Vv~G~v~~G~i~~gd~v~i~ 248 (396)
T PRK00049 195 MDAVDSYIPTPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIV 248 (396)
T ss_pred HHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEeeeEEecCCEEEEe
Confidence 8888888987731 135789999999988888886 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~~ 463 (794)
+.. .+. ..+|+.|... .+++++|.|||.+++ .|++......| .||+++
T Consensus 249 p~~--~~~-----~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 249 GIR--DTQ-----KTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred ecC--CCc-----eEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 532 111 2578888753 468999999999888 56644333556 677653
No 41
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=1.4e-29 Score=298.32 Aligned_cols=314 Identities=18% Similarity=0.248 Sum_probs=224.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+..+|++ +||+|||||||+++|.. +.+. .| ..+|+|+......+.|.
T Consensus 288 ~R~pvV~I---mGhvd~GKTSLl~~Lr~--~~v~---~~-----------e~~GIT~~iga~~v~~~------------- 335 (787)
T PRK05306 288 PRPPVVTI---MGHVDHGKTSLLDAIRK--TNVA---AG-----------EAGGITQHIGAYQVETN------------- 335 (787)
T ss_pred cCCCEEEE---ECCCCCCHHHHHHHHHh--CCcc---cc-----------ccCceeeeccEEEEEEC-------------
Confidence 35578899 99999999999999942 1111 11 24688988888777774
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~ 165 (794)
++.|+|||||||.+|...+.++++.+|++|||||+.+|+.+||.++|+++...++|+|+++||||+. ++++++
T Consensus 336 ---~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~----~a~~e~ 408 (787)
T PRK05306 336 ---GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKP----GANPDR 408 (787)
T ss_pred ---CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccc----ccCHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999998 777555
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCC
Q 003804 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (794)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~ 245 (794)
+...+.+ .+.....|. ++ .++...|+..|++.
T Consensus 409 V~~eL~~----~~~~~e~~g----~~-------vp~vpvSAktG~GI--------------------------------- 440 (787)
T PRK05306 409 VKQELSE----YGLVPEEWG----GD-------TIFVPVSAKTGEGI--------------------------------- 440 (787)
T ss_pred HHHHHHH----hcccHHHhC----CC-------ceEEEEeCCCCCCc---------------------------------
Confidence 4433322 111111110 00 02233344333211
Q ss_pred CCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHH
Q 003804 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (794)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (794)
..|+
T Consensus 441 ----------------------------------------------------------------------------~eLl 444 (787)
T PRK05306 441 ----------------------------------------------------------------------------DELL 444 (787)
T ss_pred ----------------------------------------------------------------------------hHHH
Confidence 0111
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcC
Q 003804 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (794)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~ 405 (794)
+++.... +... ..++++.|+.++||++..+++.|. ++++||++|+|+.||.|++.
T Consensus 445 e~I~~~~----e~~~-------------------l~~~~~~~~~g~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv~g- 499 (787)
T PRK05306 445 EAILLQA----EVLE-------------------LKANPDRPARGTVIEAKLDKGRGP-VATVLVQNGTLKVGDIVVAG- 499 (787)
T ss_pred Hhhhhhh----hhhh-------------------cccCCCCCcEEEEEEEEEcCCCeE-EEEEEEecCeEecCCEEEEC-
Confidence 1111100 0000 012456889999999999999997 99999999999999999851
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCC-------------------
Q 003804 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV------------------- 465 (794)
Q Consensus 406 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~------------------- 465 (794)
.+.++++.|.+.+..++++|.|||+|+|.||+++ ..+| ||+...+.
T Consensus 500 -------------~~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~-p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~ 565 (787)
T PRK05306 500 -------------TTYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGV-PQAGDEFVVVEDEKKAREIAEYRQEKAREKKL 565 (787)
T ss_pred -------------CcEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHh
Confidence 1567888888888889999999999999999886 3467 77632110
Q ss_pred ---CcccccccccC----CCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhH
Q 003804 466 ---DAHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 529 (794)
Q Consensus 466 ---~~~~~~~~~~~----~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelH 529 (794)
....+..+..+ .-+.+.+.|++...+..++|..+|.+|..+++.+.+- -+|.|.+.
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~--------~~~vG~it 628 (787)
T PRK05306 566 ARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNII--------HSGVGAIT 628 (787)
T ss_pred hhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEE--------eeccCCCC
Confidence 00112222111 1236899999999999999999999999999998774 35667664
No 42
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=2.3e-29 Score=283.26 Aligned_cols=287 Identities=20% Similarity=0.296 Sum_probs=200.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.+||++ +||+|||||||+++|........+........+|..++|++||+|++++...+.++
T Consensus 59 k~~~ni~i---iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~------------- 122 (447)
T PLN03127 59 KPHVNVGT---IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA------------- 122 (447)
T ss_pred CceEEEEE---ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC-------------
Confidence 46789999 99999999999999964321100000111126899999999999999987776653
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccchhccCCCHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~~~~~~~~~~ 164 (794)
+.+++|||||||.+|..++..++..+|++++|||+.+|+..||++++..+...++|. |+++||||+. . .+
T Consensus 123 ---~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv----~--~~ 193 (447)
T PLN03127 123 ---KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV----D--DE 193 (447)
T ss_pred ---CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC----C--HH
Confidence 789999999999999999999999999999999999999999999999999999995 6899999987 3 33
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCC
Q 003804 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~ 244 (794)
+.++.+. ++++..+..+. +.+...++...|++.++. |+
T Consensus 194 ~~~~~i~---~~i~~~l~~~~--------~~~~~vpiip~Sa~sa~~--------------------------g~----- 231 (447)
T PLN03127 194 ELLELVE---MELRELLSFYK--------FPGDEIPIIRGSALSALQ--------------------------GT----- 231 (447)
T ss_pred HHHHHHH---HHHHHHHHHhC--------CCCCcceEEEeccceeec--------------------------CC-----
Confidence 3333333 23333332211 001111222334422110 00
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHH
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (794)
+ .....+ ....|
T Consensus 232 -n------------------------------------------------~~~~~~-------------------~i~~L 243 (447)
T PLN03127 232 -N------------------------------------------------DEIGKN-------------------AILKL 243 (447)
T ss_pred -C------------------------------------------------cccccc-------------------hHHHH
Confidence 0 000000 01358
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
++++.+++|.|.. +.++||.+.|..++..++.|. +..+||.+|+++.||.|+++
T Consensus 244 l~~l~~~lp~p~r-------------------------~~~~pfr~~I~~vf~v~g~Gt-VvtG~v~~G~i~~Gd~v~i~ 297 (447)
T PLN03127 244 MDAVDEYIPEPVR-------------------------VLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEIV 297 (447)
T ss_pred HHHHHHhCCCCCc-------------------------ccccceEeeEEEEEEcCCceE-EEEEEEEccEEecCCEEEEc
Confidence 8888899997731 134789999999988888886 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecC
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~ 462 (794)
+++.. + ....+|..|... ..++++|.|||.+++ .|++....+.| .|++.
T Consensus 298 p~~~~-g----~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 298 GLRPG-G----PLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred ccCCC-C----cEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 64311 1 123688888764 357899999999887 56654434567 67765
No 43
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.9e-30 Score=258.78 Aligned_cols=284 Identities=23% Similarity=0.352 Sum_probs=194.8
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHH---HcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVA---AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 81 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~---~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 81 (794)
..+...|.||+ +||+|||||||+.++-. ..+... .-.....|..|+|++|||||..+.+.++..
T Consensus 7 ~r~kphVNigt-iGHvdHGKTTLtaAit~~la~~~~~~---~~~y~~id~aPeEk~rGITIntahveyet~--------- 73 (394)
T COG0050 7 ERTKPHVNVGT-IGHVDHGKTTLTAAITTVLAKKGGAE---AKAYDQIDNAPEEKARGITINTAHVEYETA--------- 73 (394)
T ss_pred cCCCCeeEEEE-eccccCchhhHHHHHHHHHHhhcccc---ccchhhhccCchHhhcCceeccceeEEecC---------
Confidence 33333444444 99999999999999832 222110 111235678899999999999998877664
Q ss_pred ccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccchhccC
Q 003804 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQ 160 (794)
Q Consensus 82 ~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~~~~~~ 160 (794)
+.++-.+|||||.||.++|+.+..++|+|||||.|.+|.++||++++-.+.+.|+|.| +|+||.|+.
T Consensus 74 -------~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv----- 141 (394)
T COG0050 74 -------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV----- 141 (394)
T ss_pred -------CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc-----
Confidence 7889999999999999999999999999999999999999999999999999999866 799999998
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhccc
Q 003804 161 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 240 (794)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~ 240 (794)
|-+++.+ ..-.+++.+|..|... | ...+|+.+|++..
T Consensus 142 -dd~elle---lVemEvreLLs~y~f~--g------d~~Pii~gSal~a------------------------------- 178 (394)
T COG0050 142 -DDEELLE---LVEMEVRELLSEYGFP--G------DDTPIIRGSALKA------------------------------- 178 (394)
T ss_pred -CcHHHHH---HHHHHHHHHHHHcCCC--C------CCcceeechhhhh-------------------------------
Confidence 3233222 2222455566544211 1 1224555554210
Q ss_pred ccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccc
Q 003804 241 FFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA 320 (794)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~ 320 (794)
.+.++. |..-
T Consensus 179 --------------------------------------le~~~~--------------------------------~~~~ 188 (394)
T COG0050 179 --------------------------------------LEGDAK--------------------------------WEAK 188 (394)
T ss_pred --------------------------------------hcCCcc--------------------------------hHHH
Confidence 000000 0011
Q ss_pred hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCE
Q 003804 321 SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLK 400 (794)
Q Consensus 321 ~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~ 400 (794)
+..|||++.+|+|.|. .+.+.||.+.|-.++.-..+|. ++++||-.|+|+.|++
T Consensus 189 i~eLm~avd~yip~Pe-------------------------r~~dkPflmpvEdvfsIsgrgt-vvtGrVeRG~lkvg~e 242 (394)
T COG0050 189 IEELMDAVDSYIPTPE-------------------------RDIDKPFLMPVEDVFSISGRGT-VVTGRVERGILKVGEE 242 (394)
T ss_pred HHHHHHHHHhcCCCCC-------------------------CcccccccccceeeEEEcCcee-EEEEEEeeeeeccCCE
Confidence 2459999999999993 1356899999999988888887 9999999999999999
Q ss_pred EEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003804 401 VRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (794)
Q Consensus 401 l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~~ 463 (794)
+-+.|-. .+. + ..+..+-. -++..++..|||-+++ +|.+.-...-| .|+.+.
T Consensus 243 veivG~~-~~~-k-----ttvtgvem----frk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 243 VEIVGIK-ETQ-K-----TTVTGVEM----FRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred EEEeccc-ccc-e-----eEEEhHHH----HHHHHhccccCCCcceEEEeccccceecceEeecCC
Confidence 9987633 111 1 23332221 2345688899998655 45543322345 555443
No 44
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=5.2e-29 Score=281.68 Aligned_cols=287 Identities=23% Similarity=0.349 Sum_probs=207.0
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc----------CCc-----eeecCChhhHhhhCcccccceEEE
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISL 69 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----------~G~-----~~~~D~~~~E~~rgiTi~~~~~~~ 69 (794)
+.+.++|++ +||+|||||||+++|++..|.++... .|+ .+.+|+.++||+||+|++.+...+
T Consensus 3 ~k~~~~v~i---iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~ 79 (425)
T PRK12317 3 EKPHLNLAV---IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKF 79 (425)
T ss_pred CCCEEEEEE---ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEE
Confidence 456799999 99999999999999999999987531 243 358999999999999999999888
Q ss_pred EeecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCC--CcchhHHHHHHHHHhcCCc-cE
Q 003804 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVCVQTETVLRQALGERIR-PV 146 (794)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~--gv~~qt~~~~~~~~~~~~~-~i 146 (794)
.++ ++.++|||||||.+|..++..+++.+|++|+|||+.+ |+..|++.++..+...+++ .+
T Consensus 80 ~~~----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~ii 143 (425)
T PRK12317 80 ETD----------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLI 143 (425)
T ss_pred ecC----------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEE
Confidence 875 8899999999999999999999999999999999999 9999999999998888875 67
Q ss_pred EEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcC
Q 003804 147 LTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG 226 (794)
Q Consensus 147 v~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~ 226 (794)
+++||+|+. ..+.+ .+..+.++++..+..+. +.+...++...|+..|.+..-.
T Consensus 144 vviNK~Dl~----~~~~~----~~~~~~~~i~~~l~~~g--------~~~~~~~ii~iSA~~g~gi~~~----------- 196 (425)
T PRK12317 144 VAINKMDAV----NYDEK----RYEEVKEEVSKLLKMVG--------YKPDDIPFIPVSAFEGDNVVKK----------- 196 (425)
T ss_pred EEEEccccc----cccHH----HHHHHHHHHHHHHHhhC--------CCcCcceEEEeecccCCCcccc-----------
Confidence 899999997 54422 23334444444443211 1111123445566555321000
Q ss_pred CChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhH
Q 003804 227 VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMG 306 (794)
Q Consensus 227 id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~ 306 (794)
. ...-|
T Consensus 197 ----~-~~~~w--------------------------------------------------------------------- 202 (425)
T PRK12317 197 ----S-ENMPW--------------------------------------------------------------------- 202 (425)
T ss_pred ----c-cCCCc---------------------------------------------------------------------
Confidence 0 00001
Q ss_pred HHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceE
Q 003804 307 KALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFA 386 (794)
Q Consensus 307 ~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~ 386 (794)
... ..|++++. .+|.|.. +.+.|+.+.|..++..++.|. +.
T Consensus 203 -----------y~g-~~L~~~l~-~~~~~~~-------------------------~~~~p~r~~i~~~~~~~g~G~-vv 243 (425)
T PRK12317 203 -----------YNG-PTLLEALD-NLKPPEK-------------------------PTDKPLRIPIQDVYSISGVGT-VP 243 (425)
T ss_pred -----------ccH-HHHHHHHh-cCCCCcc-------------------------ccCCCcEEEEEEEEeeCCCeE-EE
Confidence 100 23666653 3565520 135789999999988888886 89
Q ss_pred EEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003804 387 FGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (794)
Q Consensus 387 ~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~~ 463 (794)
.+||.+|+|+.||.|++++.+ . ..+|..|.. ...++++|.|||.+++ .|++......| .|+++.
T Consensus 244 ~G~v~~G~v~~Gd~v~i~P~~----~-----~~~VksI~~----~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 244 VGRVETGVLKVGDKVVFMPAG----V-----VGEVKSIEM----HHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred EEEEeeccEecCCEEEECCCC----C-----eEEEEEEEE----CCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 999999999999999986532 1 258888875 3478999999999876 45543223456 666543
No 45
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.97 E-value=8.2e-29 Score=277.33 Aligned_cols=128 Identities=30% Similarity=0.330 Sum_probs=116.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCccccc----------CCc-------eeecCChhhHhhhCcccccceEEEEe
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGISLYY 71 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----------~G~-------~~~~D~~~~E~~rgiTi~~~~~~~~~ 71 (794)
++|++ +||+|||||||+++||+.+|.+++.. .|+ ++++|+.++|++||+|++.+...+.|
T Consensus 1 ~~~~~---vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~ 77 (406)
T TIGR02034 1 LRFLT---CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST 77 (406)
T ss_pred CeEEE---ECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc
Confidence 47888 99999999999999999999987632 343 35899999999999999999888887
Q ss_pred ecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEe
Q 003804 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVN 150 (794)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iN 150 (794)
+ +++++|||||||.+|..++..++..+|+||+|||+.+|+..||+++|..+...+++ .|+++|
T Consensus 78 ~----------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviN 141 (406)
T TIGR02034 78 D----------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVN 141 (406)
T ss_pred C----------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEE
Confidence 5 78999999999999999999999999999999999999999999999999998887 457999
Q ss_pred cCccc
Q 003804 151 KMDRC 155 (794)
Q Consensus 151 KiD~~ 155 (794)
|||+.
T Consensus 142 K~D~~ 146 (406)
T TIGR02034 142 KMDLV 146 (406)
T ss_pred ecccc
Confidence 99997
No 46
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.96 E-value=6.2e-29 Score=255.15 Aligned_cols=196 Identities=42% Similarity=0.692 Sum_probs=172.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCccc---ccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~---~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+|++ +||+|||||||+++|++..+.+.+ ...+..+++|.+++|++||+|+......+.|.. .+
T Consensus 2 nv~i---iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-----------~~ 67 (213)
T cd04167 2 NVAI---AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-----------SK 67 (213)
T ss_pred cEEE---EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-----------CC
Confidence 6788 999999999999999999998763 223346789999999999999999999988852 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++.+.+++||||||.+|..++..+++.+|++|+|||+.+|...+++.+++.+...++|.++++||+|+...++..++++.
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~ 147 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDA 147 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHH
Confidence 35689999999999999999999999999999999999999999988888888888999999999999877777888899
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHH
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 221 (794)
+++++++++++|..+..+..++ .+.|.|..+||.|+|+..||+|++++|+.+|
T Consensus 148 ~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~ 200 (213)
T cd04167 148 YFKLRHIIDEVNNIIASFSTTL--SFLFSPENGNVCFASSKFGFCFTLESFAKKY 200 (213)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--ceEeccCCCeEEEEecCCCeEEecHHHHhhh
Confidence 9999999999999887654332 3668999999999999999999999998888
No 47
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.96 E-value=5.6e-28 Score=274.54 Aligned_cols=131 Identities=28% Similarity=0.303 Sum_probs=117.7
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc----------CCc-------eeecCChhhHhhhCcccccceEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGIS 68 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----------~G~-------~~~~D~~~~E~~rgiTi~~~~~~ 68 (794)
.+.++|++ +||+|||||||+++||+.+|.+++.. .|+ ++++|+.++||+||+|++.+...
T Consensus 25 ~~~~~i~i---iGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 25 KSLLRFLT---CGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred cCceEEEE---ECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 45789999 99999999999999999999987631 343 24899999999999999998887
Q ss_pred EEeecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEE
Q 003804 69 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVL 147 (794)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv 147 (794)
+.|+ ++.++|||||||.+|..++..+++.+|+||+|||+.+|+..||++++..+...+++ .|+
T Consensus 102 ~~~~----------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIv 165 (474)
T PRK05124 102 FSTE----------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVV 165 (474)
T ss_pred eccC----------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEE
Confidence 7774 78999999999999999999999999999999999999999999999999888875 567
Q ss_pred EEecCccc
Q 003804 148 TVNKMDRC 155 (794)
Q Consensus 148 ~iNKiD~~ 155 (794)
++||||+.
T Consensus 166 vvNKiD~~ 173 (474)
T PRK05124 166 AVNKMDLV 173 (474)
T ss_pred EEEeeccc
Confidence 99999997
No 48
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.96 E-value=3.1e-27 Score=273.11 Aligned_cols=312 Identities=20% Similarity=0.274 Sum_probs=215.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+...|++ +||+|||||||+++|... .+. ....+|+|+......+.|.
T Consensus 86 r~p~V~I---~Ghvd~GKTSLl~~l~~~--~v~--------------~~e~~GIT~~ig~~~v~~~-------------- 132 (587)
T TIGR00487 86 RPPVVTI---MGHVDHGKTSLLDSIRKT--KVA--------------QGEAGGITQHIGAYHVENE-------------- 132 (587)
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHHhC--Ccc--------------cccCCceeecceEEEEEEC--------------
Confidence 4568888 999999999999999321 111 1123578888877777774
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++..++|||||||.+|...+.++++.+|++|+|||+.+|+.+||.++|+++...++|+++++||+|+. +.+++++
T Consensus 133 -~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~----~~~~e~v 207 (587)
T TIGR00487 133 -DGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKP----EANPDRV 207 (587)
T ss_pred -CCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccc----cCCHHHH
Confidence 13389999999999999999999999999999999999999999999999999999999999999998 7776554
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~ 246 (794)
.+.+++ .......|. ++. ++...|+..|.+
T Consensus 208 ~~~L~~----~g~~~~~~~----~~~-------~~v~iSAktGeG----------------------------------- 237 (587)
T TIGR00487 208 KQELSE----YGLVPEDWG----GDT-------IFVPVSALTGDG----------------------------------- 237 (587)
T ss_pred HHHHHH----hhhhHHhcC----CCc-------eEEEEECCCCCC-----------------------------------
Confidence 433322 111100000 000 122233322211
Q ss_pred CceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHH
Q 003804 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (794)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (794)
+ +.|++
T Consensus 238 ---------------------------------------I-----------------------------------~eLl~ 243 (587)
T TIGR00487 238 ---------------------------------------I-----------------------------------DELLD 243 (587)
T ss_pred ---------------------------------------h-----------------------------------HHHHH
Confidence 0 01111
Q ss_pred HHHh--cCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 327 MMIF--HLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 327 ~i~~--~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
.+.. .++.+ ..+++.|+.++|+++..+++.|. ++++||++|+|+.||.|.+.
T Consensus 244 ~I~~~~~~~~l-------------------------~~~~~~~~~~~V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~iv~~ 297 (587)
T TIGR00487 244 MILLQSEVEEL-------------------------KANPNGQASGVVIEAQLDKGRGP-VATVLVQSGTLRVGDIVVVG 297 (587)
T ss_pred hhhhhhhhccc-------------------------cCCCCCCceeEEEEEEEeCCCcE-EEEEEEEeCEEeCCCEEEEC
Confidence 1110 00000 12456789999999999998887 99999999999999999853
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCC------------------
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV------------------ 465 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~------------------ 465 (794)
+ . . .+|..|+.. ....+++|.||++|.|.|+++. ..+| +|.-..+.
T Consensus 298 ~-~----~------~kVr~l~~~---~g~~v~~a~~g~~v~i~Gl~~~-p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~ 362 (587)
T TIGR00487 298 A-A----Y------GRVRAMIDE---NGKSVKEAGPSKPVEILGLSDV-PAAGDEFIVFKDEKDARLVAEKRAGKLRQKA 362 (587)
T ss_pred C-C----c------cEEEEEECC---CCCCCCEECCCCEEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence 2 1 0 256665544 3457899999999999999875 3456 55421110
Q ss_pred ----CcccccccccC----CCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhH
Q 003804 466 ----DAHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 529 (794)
Q Consensus 466 ----~~~~~~~~~~~----~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelH 529 (794)
....+..+..+ ..|.+.+.|++...+..++|.++|.++..++|.+.+-. .|.|.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~--------~~vG~i~ 426 (587)
T TIGR00487 363 LSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH--------SGVGGIT 426 (587)
T ss_pred hhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE--------eecCCCc
Confidence 00111222111 24889999999999999999999999999999998854 5566654
No 49
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=1.2e-27 Score=270.55 Aligned_cols=286 Identities=23% Similarity=0.315 Sum_probs=204.1
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEE
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISL 69 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~ 69 (794)
+.+.++|++ +||+|||||||+++|++..|.++.. ..|+ ++.+|..++|++||+|++.+...+
T Consensus 4 ~~~~~~v~i---~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 4 EKEHINVAF---IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCceeEEEE---EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 466799999 9999999999999999999988642 1332 357999999999999999998888
Q ss_pred EeecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC---cchhHHHHHHHHHhcCCc-c
Q 003804 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG---VCVQTETVLRQALGERIR-P 145 (794)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g---v~~qt~~~~~~~~~~~~~-~ 145 (794)
.+. ++.++|||||||.+|...+..+++.+|++|+|||+.+| ...|+..++..+...+++ .
T Consensus 81 ~~~----------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~i 144 (426)
T TIGR00483 81 ETD----------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQL 144 (426)
T ss_pred ccC----------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeE
Confidence 774 78999999999999999999999999999999999999 888998887777777765 6
Q ss_pred EEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhc
Q 003804 146 VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF 225 (794)
Q Consensus 146 iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~ 225 (794)
|+++||+|+. +++.++ +..+.++++..+..+. +.+....+...|+..|++..-.
T Consensus 145 IVviNK~Dl~----~~~~~~----~~~~~~ei~~~~~~~g--------~~~~~~~~i~iSA~~g~ni~~~---------- 198 (426)
T TIGR00483 145 IVAINKMDSV----NYDEEE----FEAIKKEVSNLIKKVG--------YNPDTVPFIPISAWNGDNVIKK---------- 198 (426)
T ss_pred EEEEEChhcc----CccHHH----HHHHHHHHHHHHHHcC--------CCcccceEEEeecccccccccc----------
Confidence 6899999997 655432 3333344444433211 1111123444566555432000
Q ss_pred CCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHh
Q 003804 226 GVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELM 305 (794)
Q Consensus 226 ~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~ 305 (794)
+.. .|.| ++
T Consensus 199 -------------------------------------~~~---~~w~------------------~g------------- 207 (426)
T TIGR00483 199 -------------------------------------SEN---TPWY------------------KG------------- 207 (426)
T ss_pred -------------------------------------ccC---Cccc------------------cc-------------
Confidence 000 0000 00
Q ss_pred HHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcce
Q 003804 306 GKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFF 385 (794)
Q Consensus 306 ~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l 385 (794)
..|++++.+ +|.|.. +.+.|+.+.|..++..++.|. +
T Consensus 208 ----------------~~l~~~l~~-~~~~~~-------------------------~~~~p~r~~i~~v~~~~g~G~-v 244 (426)
T TIGR00483 208 ----------------KTLLEALDA-LEPPEK-------------------------PTDKPLRIPIQDVYSITGVGT-V 244 (426)
T ss_pred ----------------hHHHHHHhc-CCCCCC-------------------------ccCCCcEEEEEEEEecCCCeE-E
Confidence 236666643 454410 235789999999998888887 8
Q ss_pred EEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecC
Q 003804 386 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (794)
Q Consensus 386 ~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg-Tl~~~ 462 (794)
+.+||.+|+|+.||.|.+.+.+ . ..+|+.|... ..++++|.|||.+++ .|++......| .|++.
T Consensus 245 v~G~v~~G~i~~gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 245 PVGRVETGVLKPGDKVVFEPAG----V-----SGEVKSIEMH----HEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred EEEEEccceeecCCEEEECCCC----c-----EEEEEEEEEC----CcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 9999999999999999986422 1 2588888753 467999999999887 45433223556 66654
No 50
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=3e-27 Score=265.31 Aligned_cols=133 Identities=23% Similarity=0.219 Sum_probs=104.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEee-cch----------
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE-MTD---------- 75 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~-~~~---------- 75 (794)
..++|++ +||+|||||||+.+| .| ..+|.+++|++||||++.....+.+. ...
T Consensus 33 ~~~~ig~---~GHVDhGKTtLv~aL-----------tg--~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~ 96 (460)
T PTZ00327 33 ATINIGT---IGHVAHGKSTVVKAL-----------SG--VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSY 96 (460)
T ss_pred CcEEEEE---EccCCCCHHHHHHHH-----------hC--CCcccchhhHHhCCchhccccccccccCcccCCccccccc
Confidence 4567777 999999999999999 55 36788999999999999887766421 000
Q ss_pred --hhhhccccccCC----CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-cchhHHHHHHHHHhcCCc-cEE
Q 003804 76 --AALKSYRGERQG----NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVL 147 (794)
Q Consensus 76 --~~~~~~~~~~~~----~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-v~~qt~~~~~~~~~~~~~-~iv 147 (794)
...++..+.... -.+.++|||||||.+|..++..++..+|+|++||||.+| +++||++++..+...+++ .|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIV 176 (460)
T PTZ00327 97 GSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIII 176 (460)
T ss_pred CCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEE
Confidence 000000000000 135799999999999999999999999999999999997 899999999999889997 468
Q ss_pred EEecCccc
Q 003804 148 TVNKMDRC 155 (794)
Q Consensus 148 ~iNKiD~~ 155 (794)
++||||+.
T Consensus 177 vlNKiDlv 184 (460)
T PTZ00327 177 LQNKIDLV 184 (460)
T ss_pred EEeccccc
Confidence 99999987
No 51
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1e-26 Score=254.82 Aligned_cols=284 Identities=23% Similarity=0.319 Sum_probs=208.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEEEee
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYYE 72 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~ 72 (794)
.+++++ +||+|+|||||.++|||..|.++.. ..|+ ++.+|...+||+||+|++.....|+-
T Consensus 177 ~l~lvv---~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes- 252 (603)
T KOG0458|consen 177 HLNLVV---LGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES- 252 (603)
T ss_pred ceEEEE---EeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-
Confidence 467788 9999999999999999999998764 2443 57999999999999999999888874
Q ss_pred cchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-------cchhHHHHHHHHHhcCCc-
Q 003804 73 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR- 144 (794)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-------v~~qt~~~~~~~~~~~~~- 144 (794)
+.+.++|||+|||.||..+|+.+...+|.|||||||+-| ...||+++...+...|+.
T Consensus 253 ---------------~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~q 317 (603)
T KOG0458|consen 253 ---------------KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQ 317 (603)
T ss_pred ---------------CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcce
Confidence 488999999999999999999999999999999999965 578999999999999995
Q ss_pred cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhh-cccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhh
Q 003804 145 PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA-TYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 223 (794)
Q Consensus 145 ~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 223 (794)
.||+|||||.. +|+.+ +|++|...++.+|. .+... ..++.|.| .||+.|-+.+-
T Consensus 318 livaiNKmD~V----~Wsq~----RF~eIk~~l~~fL~~~~gf~-es~v~FIP-------iSGl~GeNL~k--------- 372 (603)
T KOG0458|consen 318 LIVAINKMDLV----SWSQD----RFEEIKNKLSSFLKESCGFK-ESSVKFIP-------ISGLSGENLIK--------- 372 (603)
T ss_pred EEEEeeccccc----CccHH----HHHHHHHHHHHHHHHhcCcc-cCCcceEe-------cccccCCcccc---------
Confidence 66899999999 88844 68888888888883 22111 01223333 34444421100
Q ss_pred hcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHH
Q 003804 224 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 303 (794)
Q Consensus 224 ~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 303 (794)
.+ ++..+.++.++
T Consensus 373 ----------------------------~~----------------------------~~~~l~~WY~G----------- 385 (603)
T KOG0458|consen 373 ----------------------------IE----------------------------QENELSQWYKG----------- 385 (603)
T ss_pred ----------------------------cc----------------------------cchhhhhhhcC-----------
Confidence 00 01112222222
Q ss_pred HhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCc
Q 003804 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 383 (794)
Q Consensus 304 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~ 383 (794)
..||+.|-. +-.|.. .-+.||++-|..++..+..+
T Consensus 386 ------------------p~LL~~id~-~~~p~~-------------------------~~~kPl~ltIsdi~~~~~~~- 420 (603)
T KOG0458|consen 386 ------------------PTLLSQIDS-FKIPER-------------------------PIDKPLRLTISDIYPLPSSG- 420 (603)
T ss_pred ------------------ChHHHHHhh-ccCCCC-------------------------cccCCeEEEhhheeecCCCe-
Confidence 347777765 333310 12459999999998877766
Q ss_pred ceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eee
Q 003804 384 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLT 460 (794)
Q Consensus 384 ~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~--gl~~~~~~tg-Tl~ 460 (794)
+..+|||.||.+++|+.||++... . ...|..|.. ...+...+.|||-+.+. |+.....+.| +++
T Consensus 421 ~~i~gkiesG~iq~gqkl~i~~s~----e-----~~~vk~l~~----~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 421 VSISGKIESGYIQPGQKLYIMTSR----E-----DATVKGLTS----NDEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred eEEEEEEeccccccCCEEEEecCc----c-----eEEEEeeec----CCCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 589999999999999999986532 1 146666653 35778899999998763 6544444666 444
No 52
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.95 E-value=3.6e-26 Score=267.18 Aligned_cols=317 Identities=19% Similarity=0.230 Sum_probs=214.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+..+|++ +||+|||||||+++|....... ...+|+|.......+.|.. +
T Consensus 243 r~p~V~I---vGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~------------~ 291 (742)
T CHL00189 243 RPPIVTI---LGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEY------------K 291 (742)
T ss_pred cCCEEEE---ECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEe------------c
Confidence 4568999 9999999999999996443321 1236788877766666641 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
+.++.|+|||||||.+|...+.++++.+|++|+|||+.+|+++||.++|+.+...++|+|+++||+|+. +.+.+++
T Consensus 292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~----~~~~e~v 367 (742)
T CHL00189 292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKA----NANTERI 367 (742)
T ss_pred CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcc----ccCHHHH
Confidence 236899999999999999999999999999999999999999999999999999999999999999998 6654433
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~ 246 (794)
.+.++. .......+. +. .++...|+..|.+
T Consensus 368 ~~eL~~----~~ll~e~~g----~~-------vpvv~VSAktG~G----------------------------------- 397 (742)
T CHL00189 368 KQQLAK----YNLIPEKWG----GD-------TPMIPISASQGTN----------------------------------- 397 (742)
T ss_pred HHHHHH----hccchHhhC----CC-------ceEEEEECCCCCC-----------------------------------
Confidence 332221 100000000 00 0222333332211
Q ss_pred CceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHH
Q 003804 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (794)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (794)
+ ..|++
T Consensus 398 ---------------------------------------I-----------------------------------deLle 403 (742)
T CHL00189 398 ---------------------------------------I-----------------------------------DKLLE 403 (742)
T ss_pred ---------------------------------------H-----------------------------------HHHHH
Confidence 0 11222
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCC
Q 003804 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (794)
Q Consensus 327 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 406 (794)
++..+.+.+. ..++++.|+.++|+++..+++.|. ++++||++|+|+.||.|++..
T Consensus 404 ~I~~l~e~~~-----------------------lk~~~~~~~~g~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~vv~g~- 458 (742)
T CHL00189 404 TILLLAEIED-----------------------LKADPTQLAQGIILEAHLDKTKGP-VATILVQNGTLHIGDIIVIGT- 458 (742)
T ss_pred hhhhhhhhhc-----------------------ccCCCCCCceEEEEEEEEcCCCce-EEEEEEEcCEEecCCEEEECC-
Confidence 2222211000 012456788999999999999887 999999999999999998521
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCC-CCc-----------------
Q 003804 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE-VDA----------------- 467 (794)
Q Consensus 407 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~-~~~----------------- 467 (794)
+.++++.+.+....++++|.|||+|+|.||+.. ..+| +|.-..+ +.+
T Consensus 459 -------------~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~-~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~ 524 (742)
T CHL00189 459 -------------SYAKIRGMINSLGNKINLATPSSVVEIWGLSSV-PATGEHFQVFNSEKEAKLKIIKNKENNKKDTTK 524 (742)
T ss_pred -------------cceEEEEEEcCCCcCccEEcCCCceEecCcccC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhc
Confidence 356777888888899999999999999999654 3667 5432211 000
Q ss_pred -cccc----ccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhH
Q 003804 468 -HPIR----AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 529 (794)
Q Consensus 468 -~~~~----~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelH 529 (794)
..+. .+.....+.+.+-|.....+-.+.+..+|.++..+. +.+ .++=+|.|.+.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~--v~i------~i~~~~vG~it 583 (742)
T CHL00189 525 RITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKK--VQL------NILYASLGEVT 583 (742)
T ss_pred ccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCc--EEE------EEEEeecCCCC
Confidence 0000 011112467888889999999999999998885433 222 23456777764
No 53
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.95 E-value=4.7e-26 Score=269.07 Aligned_cols=131 Identities=29% Similarity=0.315 Sum_probs=117.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-------eeecCChhhHhhhCcccccceEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-------VRMTDTRQDEAERGITIKSTGIS 68 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-------~~~~D~~~~E~~rgiTi~~~~~~ 68 (794)
.+.++|++ +||+|||||||+++|++..|.++.. ..|+ ++.+|..++|++||+|++.+...
T Consensus 22 ~~~~~i~i---iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 22 KSLLRFIT---CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred CCeeEEEE---ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 35689999 9999999999999999999998742 2453 35899999999999999999888
Q ss_pred EEeecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEE
Q 003804 69 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVL 147 (794)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv 147 (794)
+.|+ +.+++|||||||.+|...+..++..+|++++|||+.+|+..||++++..+...+++ .|+
T Consensus 99 ~~~~----------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iiv 162 (632)
T PRK05506 99 FATP----------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVL 162 (632)
T ss_pred EccC----------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEE
Confidence 8775 78899999999999999999999999999999999999999999999999888875 557
Q ss_pred EEecCccc
Q 003804 148 TVNKMDRC 155 (794)
Q Consensus 148 ~iNKiD~~ 155 (794)
++||||+.
T Consensus 163 vvNK~D~~ 170 (632)
T PRK05506 163 AVNKMDLV 170 (632)
T ss_pred EEEecccc
Confidence 99999997
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=1.2e-26 Score=233.54 Aligned_cols=168 Identities=31% Similarity=0.402 Sum_probs=135.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccC--CceeecCChhhHhhhCcccccceEEEE--eecchhhhhccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLY--YEMTDAALKSYR 82 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~--G~~~~~D~~~~E~~rgiTi~~~~~~~~--~~~~~~~~~~~~ 82 (794)
+..+|++ +||+|||||||+++|++..+.+..... +..+.+|..++|++||+|+..+...+. +.
T Consensus 2 ~~~~I~i---~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~---------- 68 (188)
T PF00009_consen 2 NIRNIAI---IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN---------- 68 (188)
T ss_dssp TEEEEEE---EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES----------
T ss_pred CEEEEEE---ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc----------
Confidence 4578999 999999999999999999998766210 113468999999999999999999888 54
Q ss_pred cccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCC
Q 003804 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (794)
Q Consensus 83 ~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~ 162 (794)
++.++|||||||.+|..++.++++.+|+||+|||+.+|++.||+++|+++...++|+++|+||||+. ..+
T Consensus 69 ------~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~----~~~ 138 (188)
T PF00009_consen 69 ------NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI----EKE 138 (188)
T ss_dssp ------SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS----HHH
T ss_pred ------ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch----hhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999997 333
Q ss_pred HHHHHHHHHHHHHHhhh-hhhcccCCCCCCceeec-cCceeeeccCccceee
Q 003804 163 GEEAYQTFQKVIENANV-IMATYEDPLLGDVQVYP-EKGTVAFSAGLHGWAF 212 (794)
Q Consensus 163 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p-~~~~v~~~s~~~g~~~ 212 (794)
+++.++++.. ++..+.. .. ...++.+.|+..||++
T Consensus 139 -------~~~~~~~~~~~l~~~~~~--------~~~~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 139 -------LEEIIEEIKEKLLKEYGE--------NGEEIVPVIPISALTGDGI 175 (188)
T ss_dssp -------HHHHHHHHHHHHHHHTTS--------TTTSTEEEEEEBTTTTBTH
T ss_pred -------HHHHHHHHHHHhcccccc--------CccccceEEEEecCCCCCH
Confidence 3344444432 2222110 01 1236888999999964
No 55
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.94 E-value=3.5e-25 Score=258.00 Aligned_cols=111 Identities=31% Similarity=0.365 Sum_probs=99.0
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEEEc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlID 96 (794)
+||+|||||||+++| .| ..+|..++|++||+|++.....+... ++..++|||
T Consensus 6 ~GhvdhGKTtLi~aL-----------tg--~~~dr~~eE~~rGiTI~l~~~~~~~~---------------~g~~i~~ID 57 (614)
T PRK10512 6 AGHVDHGKTTLLQAI-----------TG--VNADRLPEEKKRGMTIDLGYAYWPQP---------------DGRVLGFID 57 (614)
T ss_pred ECCCCCCHHHHHHHH-----------hC--CCCccchhcccCCceEEeeeEEEecC---------------CCcEEEEEE
Confidence 999999999999999 44 24688899999999998876655443 356799999
Q ss_pred CCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccc
Q 003804 97 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (794)
Q Consensus 97 TPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~ 155 (794)
||||.+|..++..++..+|++++|||+.+|+.+||++++..+...++|. |+|+||+|+.
T Consensus 58 tPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 58 VPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred CCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 9999999999999999999999999999999999999999998889986 6899999987
No 56
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.94 E-value=2.6e-26 Score=226.21 Aligned_cols=133 Identities=48% Similarity=0.851 Sum_probs=120.7
Q ss_pred CcEEEEEeecccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCC--------------------------
Q 003804 551 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDD-------------------------- 604 (794)
Q Consensus 551 ~p~V~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~-------------------------- 604 (794)
+|.|+|||||.+.+...+..+++|+|+++++.++||+.++.+.|+.|.+...++
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 699999999999988788889999999999999999999999998887643211
Q ss_pred -------------------ccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHH
Q 003804 605 -------------------PKYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 665 (794)
Q Consensus 605 -------------------~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 665 (794)
.+|+++++++|++||++|+++|||||+||+||+|+|.|+.+|.|+.+++.+|+++|+|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 1166889999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHhcCCceecCeEEE
Q 003804 666 YASQLTAKPRLLEPVYLV 683 (794)
Q Consensus 666 ~~al~~a~~~llEPi~~~ 683 (794)
++|+++|+|+||||||.|
T Consensus 161 ~~a~l~a~prLLEPim~v 178 (178)
T cd01683 161 YSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHCCCEEEcceEeC
Confidence 999999999999999975
No 57
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.93 E-value=1.1e-24 Score=244.16 Aligned_cols=135 Identities=24% Similarity=0.302 Sum_probs=106.8
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhh--hhccc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAA--LKSYR 82 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~--~~~~~ 82 (794)
..+.++|++ +||+|||||||+++| .| .++|..++|++||+|+..+...+.|...... .+.+.
T Consensus 6 ~~~~~ni~v---~Gh~d~GKSTL~~~L-----------~~--~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
T PRK04000 6 VQPEVNIGM---VGHVDHGKTTLVQAL-----------TG--VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYT 69 (411)
T ss_pred CCCcEEEEE---EccCCCCHHHHHHHh-----------hC--eecccCHhHHhcCcEEEecccccccccccccCcccccc
Confidence 356789999 999999999999999 33 3689999999999999988766665310000 00000
Q ss_pred cc--cC------CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-chhHHHHHHHHHhcCCc-cEEEEecC
Q 003804 83 GE--RQ------GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKM 152 (794)
Q Consensus 83 ~~--~~------~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-~~qt~~~~~~~~~~~~~-~iv~iNKi 152 (794)
.. .+ ...+.++|||||||.+|..++..++..+|++++|||+.+|. ..++..++..+...+++ .++++||+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 70 TEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKI 149 (411)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEee
Confidence 00 00 11478999999999999999999999999999999999998 89999999988888875 67889999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 150 Dl~ 152 (411)
T PRK04000 150 DLV 152 (411)
T ss_pred ccc
Confidence 987
No 58
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.93 E-value=8e-26 Score=227.90 Aligned_cols=168 Identities=22% Similarity=0.271 Sum_probs=130.5
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +||+|||||||+++|++......+........+|+.++|++||+|++++...+.|.
T Consensus 2 ~~ni~i---iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------------- 63 (195)
T cd01884 2 HVNVGT---IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------------- 63 (195)
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC---------------
Confidence 578999 99999999999999998753222110011247899999999999999988877764
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccchhccCCCHHHH
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
+..++|||||||.+|..++.++++.+|+|++|||+.+|+..||+++|+.+.+.++| .|+|+||||+. . .++.
T Consensus 64 -~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~----~--~~~~ 136 (195)
T cd01884 64 -NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV----D--DEEL 136 (195)
T ss_pred -CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC----C--cHHH
Confidence 78999999999999999999999999999999999999999999999999999998 56899999986 2 2222
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCcccee
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWA 211 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~ 211 (794)
+ +.+.+++...+..+. +.+...++.+.|++.|+.
T Consensus 137 ~---~~~~~~i~~~l~~~g--------~~~~~v~iipiSa~~g~n 170 (195)
T cd01884 137 L---ELVEMEVRELLSKYG--------FDGDNTPIVRGSALKALE 170 (195)
T ss_pred H---HHHHHHHHHHHHHhc--------ccccCCeEEEeeCccccC
Confidence 2 223334444444321 223334678889988874
No 59
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.93 E-value=2.5e-24 Score=241.34 Aligned_cols=133 Identities=26% Similarity=0.303 Sum_probs=106.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhh--hhcccc-
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAA--LKSYRG- 83 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~--~~~~~~- 83 (794)
+.++|++ +||+|||||||+++| .| ..+|..++|++||+|+..+...+.|...... ...+..
T Consensus 3 ~~~~i~i---iG~~~~GKSTL~~~L-----------t~--~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 66 (406)
T TIGR03680 3 PEVNIGM---VGHVDHGKTTLTKAL-----------TG--VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTE 66 (406)
T ss_pred ceEEEEE---EccCCCCHHHHHHHH-----------hC--eecccCHhHHHcCceeEecccccccccccccCcccccccc
Confidence 4688999 999999999999999 33 3588999999999999988777664310000 000000
Q ss_pred -ccC------CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-chhHHHHHHHHHhcCCc-cEEEEecCcc
Q 003804 84 -ERQ------GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMDR 154 (794)
Q Consensus 84 -~~~------~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-~~qt~~~~~~~~~~~~~-~iv~iNKiD~ 154 (794)
..+ ..+..++|||||||.+|..++..+++.+|++|+|||+.+|. ..||++++..+...+++ .++++||+|+
T Consensus 67 ~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 67 PVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 001 12578999999999999999999999999999999999998 89999999988888875 6789999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 147 ~ 147 (406)
T TIGR03680 147 V 147 (406)
T ss_pred C
Confidence 7
No 60
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.4e-23 Score=214.29 Aligned_cols=334 Identities=21% Similarity=0.265 Sum_probs=216.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEe-ecch-----hhhh
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYY-EMTD-----AALK 79 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~-----~~~~ 79 (794)
..++||.. +||+|||||||+.+| .| -++|.+.+|.+|||||+.......+ .+++ ....
T Consensus 8 Qp~vNIG~---vGHVdHGKtTlv~Al-----------sG--vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~ 71 (415)
T COG5257 8 QPEVNIGM---VGHVDHGKTTLTKAL-----------SG--VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTT 71 (415)
T ss_pred CcceEeee---eeecccchhhheehh-----------hc--eeeechhHHHhcCcEEEeccccCceEeCCCCCCCccccc
Confidence 45788888 999999999999999 67 6899999999999999887665542 2221 0001
Q ss_pred ccccc---cC-CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-cchhHHHHHHHHHhcCCc-cEEEEecCc
Q 003804 80 SYRGE---RQ-GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTVNKMD 153 (794)
Q Consensus 80 ~~~~~---~~-~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-v~~qt~~~~~~~~~~~~~-~iv~iNKiD 153 (794)
+..|. .+ .=-.++.|+|+|||.-++..|.++....|+|+|||+|++. .++||++++-.+.-.+++ +|++-||+|
T Consensus 72 ~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKID 151 (415)
T COG5257 72 EPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKID 151 (415)
T ss_pred CCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccc
Confidence 11111 11 1125799999999999999999999999999999999986 799999999888888886 558999999
Q ss_pred cchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHH
Q 003804 154 RCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMM 233 (794)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~ 233 (794)
+. +.+++.+.+++|.+-+.-... .+.++..-|++++
T Consensus 152 lV------~~E~AlE~y~qIk~FvkGt~A--------------e~aPIIPiSA~~~------------------------ 187 (415)
T COG5257 152 LV------SRERALENYEQIKEFVKGTVA--------------ENAPIIPISAQHK------------------------ 187 (415)
T ss_pred ee------cHHHHHHHHHHHHHHhccccc--------------CCCceeeehhhhc------------------------
Confidence 98 778888888777653322111 0011111111000
Q ss_pred HHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHH
Q 003804 234 ERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRV 313 (794)
Q Consensus 234 ~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i 313 (794)
.
T Consensus 188 -------------------------------------------------------------~------------------ 188 (415)
T COG5257 188 -------------------------------------------------------------A------------------ 188 (415)
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred HhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcc-------eE
Q 003804 314 MQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRF-------FA 386 (794)
Q Consensus 314 ~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~-------l~ 386 (794)
.++.|+++|.+|+|.|. .|.+.|.++||.+.+..+..|.. +.
T Consensus 189 ------NIDal~e~i~~~IptP~-------------------------rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGVi 237 (415)
T COG5257 189 ------NIDALIEAIEKYIPTPE-------------------------RDLDKPPRMYVARSFDVNKPGTPPEELKGGVI 237 (415)
T ss_pred ------CHHHHHHHHHHhCCCCc-------------------------cCCCCCceEEEEeecccCCCCCCHHHccCcee
Confidence 02568999999999993 14567778888888765444321 66
Q ss_pred EEEEEeeeecCCCEEEEcCCCCCCCCccc-cceeeeceEEEEecCceeeeCcccCCCEEEE-eccccccccceeeecCCC
Q 003804 387 FGRVFSGKVATGLKVRIMGPNYVPGEKKD-LYVKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQYITKNATLTNEKE 464 (794)
Q Consensus 387 ~~RV~sG~L~~g~~l~v~~~n~~~~~~~~-~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai-~gl~~~~~~tgTl~~~~~ 464 (794)
=+-+.+|.|+.||++-+.. .....+.+. ...--.+.+..+++ ...++++|.+|-.+++ ++||.++++.+-|...-.
T Consensus 238 GGsl~~G~l~vGDEIEIrP-Gi~v~k~~k~~~~pi~T~i~Sl~a-g~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~ 315 (415)
T COG5257 238 GGSLVQGVLRVGDEIEIRP-GIVVEKGGKTVWEPITTEIVSLQA-GGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVV 315 (415)
T ss_pred cceeeeeeEecCCeEEecC-CeEeecCCceEEEEeeEEEEEEEe-CCeeeeeccCCceEEEecccCcchhhhhhhccccc
Confidence 7788999999999998632 211111110 00111123333333 3478999999999888 478877666543332110
Q ss_pred CCcccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecch
Q 003804 465 VDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGE 527 (794)
Q Consensus 465 ~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~Ge 527 (794)
=.+=..| +...++.+|.. -|.++.-.+-.++++--.++|.++...|-
T Consensus 316 -----G~pG~lP-pv~~~~~ie~~----------LL~RvvG~~~e~kvepik~~E~Lml~VGt 362 (415)
T COG5257 316 -----GKPGTLP-PVWTSIRIEYH----------LLERVVGTKEELKVEPIKTNEVLMLNVGT 362 (415)
T ss_pred -----cCCCCCC-CceEEEEEEee----------ehhhhhCcccccccccccCCCeEEEEeec
Confidence 0111222 34445555532 24444445555666544788888877664
No 61
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.91 E-value=3.1e-23 Score=241.20 Aligned_cols=115 Identities=33% Similarity=0.384 Sum_probs=103.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +||+|||||||+++| .|. .+|..++|++||+|++.....+.++
T Consensus 1 ~~I~i---iG~~d~GKTTLi~aL-----------tg~--~~d~~~eE~~rGiTid~~~~~~~~~---------------- 48 (581)
T TIGR00475 1 MIIAT---AGHVDHGKTTLLKAL-----------TGI--AADRLPEEKKRGMTIDLGFAYFPLP---------------- 48 (581)
T ss_pred CEEEE---ECCCCCCHHHHHHHH-----------hCc--cCcCChhHhcCCceEEeEEEEEEeC----------------
Confidence 36777 999999999999999 342 3677889999999999887777664
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~ 155 (794)
++.++|||||||.+|...+..++..+|++++|||+.+|+.+||.+++..+...++| +++++||+|+.
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 58999999999999999999999999999999999999999999999988889999 88999999987
No 62
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.3e-23 Score=213.52 Aligned_cols=149 Identities=28% Similarity=0.332 Sum_probs=123.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc-------------cCCc----eeecCChhhHhhhCcccccceEEE
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE-------------VAGD----VRMTDTRQDEAERGITIKSTGISL 69 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~-------------~~G~----~~~~D~~~~E~~rgiTi~~~~~~~ 69 (794)
+.++.+- .|++|.|||||+++|||.+..+-.+ ..|+ +-.+|-.+.|||.||||+.+...|
T Consensus 5 ~lLRfiT---cGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 5 SLLRFIT---CGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred cceeEEE---eccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 3466666 8999999999999999988766332 1122 236788999999999999998776
Q ss_pred EeecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EE
Q 003804 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LT 148 (794)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~ 148 (794)
... ..+|.+.|||||..|..+|..+.+-||.||++|||..|+..||+++--.+.-.|++.+ ++
T Consensus 82 sT~----------------KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvA 145 (431)
T COG2895 82 STE----------------KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVA 145 (431)
T ss_pred ccc----------------cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEE
Confidence 653 7899999999999999999999999999999999999999999999999889999765 78
Q ss_pred EecCccchhccCCCHHHHHHHHHHHHHHhhhhhh
Q 003804 149 VNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA 182 (794)
Q Consensus 149 iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (794)
+||||+. +++.+ .|.+|.++......
T Consensus 146 VNKmDLv----dy~e~----~F~~I~~dy~~fa~ 171 (431)
T COG2895 146 VNKMDLV----DYSEE----VFEAIVADYLAFAA 171 (431)
T ss_pred Eeeeccc----ccCHH----HHHHHHHHHHHHHH
Confidence 9999999 88733 46666666555443
No 63
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.90 E-value=1.1e-23 Score=216.99 Aligned_cols=170 Identities=25% Similarity=0.317 Sum_probs=131.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCccccc----------CCce-----eecCChhhHhhhCcccccceEEEEeecc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGDV-----RMTDTRQDEAERGITIKSTGISLYYEMT 74 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----------~G~~-----~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 74 (794)
||++ +||+|||||||+++|++.+|.+++.. .|+. +++|+.++|++||+|++++...+.|.
T Consensus 1 nv~i---~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~-- 75 (219)
T cd01883 1 NLVV---IGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE-- 75 (219)
T ss_pred CEEE---ecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--
Confidence 5788 99999999999999999999987632 2432 48999999999999999999999885
Q ss_pred hhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCC-------CcchhHHHHHHHHHhcCC-ccE
Q 003804 75 DAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------GVCVQTETVLRQALGERI-RPV 146 (794)
Q Consensus 75 ~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~-------gv~~qt~~~~~~~~~~~~-~~i 146 (794)
++++++||||||.+|..++..+++.+|++|+|||+.+ ++..|+.+++..+...++ |++
T Consensus 76 --------------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 141 (219)
T cd01883 76 --------------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLI 141 (219)
T ss_pred --------------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEE
Confidence 8999999999999999999999999999999999998 577899999988877775 566
Q ss_pred EEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceee
Q 003804 147 LTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 212 (794)
Q Consensus 147 v~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 212 (794)
+|+||||+. +++.. ...+.+++++++..+..+. +.+...++...|+..|.+.
T Consensus 142 ivvNK~Dl~----~~~~~--~~~~~~i~~~l~~~l~~~~--------~~~~~~~ii~iSA~tg~gi 193 (219)
T cd01883 142 VAVNKMDDV----TVNWS--EERYDEIKKELSPFLKKVG--------YNPKDVPFIPISGLTGDNL 193 (219)
T ss_pred EEEEccccc----ccccc--HHHHHHHHHHHHHHHHHcC--------CCcCCceEEEeecCcCCCC
Confidence 799999997 43211 1123444444444443211 1112235667788777643
No 64
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1e-22 Score=220.72 Aligned_cols=126 Identities=27% Similarity=0.371 Sum_probs=108.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++.-|.| +||+|||||||+++|= .-.+.....| |||......++.++
T Consensus 152 RpPVVTi---MGHVDHGKTTLLD~lR--ks~VAA~E~G--------------GITQhIGAF~V~~p-------------- 198 (683)
T KOG1145|consen 152 RPPVVTI---MGHVDHGKTTLLDALR--KSSVAAGEAG--------------GITQHIGAFTVTLP-------------- 198 (683)
T ss_pred CCCeEEE---eecccCChhhHHHHHh--hCceehhhcC--------------CccceeceEEEecC--------------
Confidence 4566788 9999999999999992 2212111233 79998888887775
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++..|+|+|||||.-|.....++.+.+|.+||||.+.+|+.+||.+.+..+...++|+|+++||+|++ +++++.+
T Consensus 199 -~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp----~a~pekv 273 (683)
T KOG1145|consen 199 -SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP----GANPEKV 273 (683)
T ss_pred -CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC----CCCHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 9998887
Q ss_pred HHHH
Q 003804 167 YQTF 170 (794)
Q Consensus 167 ~~~~ 170 (794)
++.+
T Consensus 274 ~~eL 277 (683)
T KOG1145|consen 274 KREL 277 (683)
T ss_pred HHHH
Confidence 6544
No 65
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.3e-21 Score=215.15 Aligned_cols=130 Identities=27% Similarity=0.340 Sum_probs=110.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++.-|++ +||+|||||||++.+ +...+....+| |||.......+.++.
T Consensus 4 R~PvVti---mGHVDHGKTtLLD~I--R~t~Va~~EaG--------------GITQhIGA~~v~~~~------------- 51 (509)
T COG0532 4 RPPVVTI---MGHVDHGKTTLLDKI--RKTNVAAGEAG--------------GITQHIGAYQVPLDV------------- 51 (509)
T ss_pred CCCEEEE---eCcccCCccchhhhH--hcCccccccCC--------------ceeeEeeeEEEEecc-------------
Confidence 4556788 999999999999999 44444433355 789888888777741
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
.+...|+|||||||.-|.....++...+|.||||||+.+|+.+||.+.+.+++..++|+++++||||++ .++|+.+
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~----~~np~~v 127 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP----EANPDKV 127 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC----CCCHHHH
Confidence 024689999999999999999999999999999999999999999999999999999999999999999 8988876
Q ss_pred HHHHHH
Q 003804 167 YQTFQK 172 (794)
Q Consensus 167 ~~~~~~ 172 (794)
...+++
T Consensus 128 ~~el~~ 133 (509)
T COG0532 128 KQELQE 133 (509)
T ss_pred HHHHHH
Confidence 655544
No 66
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.89 E-value=4.3e-23 Score=211.00 Aligned_cols=127 Identities=29% Similarity=0.293 Sum_probs=112.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccC----------C-----ceeecCChhhHhhhCcccccceEEEEeecc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA----------G-----DVRMTDTRQDEAERGITIKSTGISLYYEMT 74 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~----------G-----~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 74 (794)
+|++ +||+|||||||+++|++.+|.+..... | ..+.+|..++|++||+|++++...+.|.
T Consensus 1 ~i~i---iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-- 75 (208)
T cd04166 1 RFLT---CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP-- 75 (208)
T ss_pred CEEE---EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--
Confidence 4788 999999999999999999999873211 1 1468999999999999999999888775
Q ss_pred hhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCc
Q 003804 75 DAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMD 153 (794)
Q Consensus 75 ~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD 153 (794)
+..++|||||||.+|..++..+++.+|++|+|||+.+|...+++.++..+...++|. |+|+||+|
T Consensus 76 --------------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 76 --------------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred --------------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchh
Confidence 789999999999999999999999999999999999999999999988888888765 56899999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 142 ~~ 143 (208)
T cd04166 142 LV 143 (208)
T ss_pred cc
Confidence 97
No 67
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3e-22 Score=214.66 Aligned_cols=125 Identities=34% Similarity=0.397 Sum_probs=110.0
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEEEc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlID 96 (794)
.||+|||||||+.++ .| ..+|..++|++||+|++.+...+... ++.+.|||
T Consensus 6 ~GhidHgkT~L~~al-----------tg--~~~d~l~EekKRG~TiDlg~~y~~~~----------------d~~~~fID 56 (447)
T COG3276 6 AGHIDHGKTTLLKAL-----------TG--GVTDRLPEEKKRGITIDLGFYYRKLE----------------DGVMGFID 56 (447)
T ss_pred eeeeeccchhhhhhh-----------cc--cccccchhhhhcCceEeeeeEeccCC----------------CCceEEee
Confidence 899999999999999 55 47899999999999999987666554 66999999
Q ss_pred CCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccchhccCCCHHHHHHHHHHHHH
Q 003804 97 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIE 175 (794)
Q Consensus 97 TPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~ 175 (794)
.|||.||...+..++...|+|+||||+.+|+.+||.+++..+...+++. ++|+||+|+. +..++.+.++++++
T Consensus 57 vpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~------d~~r~e~~i~~Il~ 130 (447)
T COG3276 57 VPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRV------DEARIEQKIKQILA 130 (447)
T ss_pred CCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccc------cHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999987 7999999987 55555555555554
Q ss_pred H
Q 003804 176 N 176 (794)
Q Consensus 176 ~ 176 (794)
.
T Consensus 131 ~ 131 (447)
T COG3276 131 D 131 (447)
T ss_pred h
Confidence 4
No 68
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.88 E-value=1.5e-21 Score=203.34 Aligned_cols=302 Identities=22% Similarity=0.337 Sum_probs=206.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCce-eecCChhhHhhhCcccccceEEEEeecch-hhhhcccc--
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDV-RMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRG-- 83 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~-~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~-- 83 (794)
++.|+. +||+|||||||+.+| .+|..+.. .|.+ .++|..++|.+||.|-+.+..-+.|.... -++++...
T Consensus 117 hv~Vg~---aGhVdhGKSTlvG~L--vtG~~DDG-~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 117 HVLVGV---AGHVDHGKSTLVGVL--VTGRLDDG-DGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred eEEEEE---eccccCCcceEEEEE--EecCCCCC-CcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 466666 999999999999999 56665543 3333 48999999999999999988888886522 12222211
Q ss_pred --c--cCCCceEEEEEcCCCccchHHHHHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchh
Q 003804 84 --E--RQGNEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 157 (794)
Q Consensus 84 --~--~~~~~~~inlIDTPGh~df~~e~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~ 157 (794)
. .+..+..+.|+||-||..+...+++++ ...|..+|+|.|.+|++..|++++..+...++|.|++++|+|+.
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~-- 268 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV-- 268 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC--
Confidence 1 244568899999999999999999999 47899999999999999999999999999999999999999987
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhh
Q 003804 158 ELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 237 (794)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~w 237 (794)
+ + ++++.+++++..++...+ .+|+.-.- .|...+....-
T Consensus 269 ----~-d---dr~~~v~~ei~~~Lk~v~--------------Rip~~vk~-------------------~~d~v~aa~a~ 307 (527)
T COG5258 269 ----P-D---DRFQGVVEEISALLKRVG--------------RIPLIVKD-------------------TDDVVLAAKAM 307 (527)
T ss_pred ----c-H---HHHHHHHHHHHHHHHHhc--------------ccceeeec-------------------cchhHHhhhhh
Confidence 2 1 346666666666654211 12221000 00000000000
Q ss_pred cccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhcc
Q 003804 238 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTW 317 (794)
Q Consensus 238 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 317 (794)
+.+. . +-|+.. . .+.+.+
T Consensus 308 -------k~~~---------~---------vvPi~~-t-------------------SsVTg~----------------- 325 (527)
T COG5258 308 -------KAGR---------G---------VVPIFY-T-------------------SSVTGE----------------- 325 (527)
T ss_pred -------hcCC---------c---------eEEEEE-E-------------------ecccCc-----------------
Confidence 0000 0 000000 0 001111
Q ss_pred ccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecC
Q 003804 318 LPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVAT 397 (794)
Q Consensus 318 ~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~ 397 (794)
--.||+-+...||.-. ..+..+||.+||.|++.....|. ++.+-|-||.|+.
T Consensus 326 ---GldlL~e~f~~Lp~rr------------------------~~~d~g~flmYId~iYsVtGVGt-VvsGsV~~G~l~~ 377 (527)
T COG5258 326 ---GLDLLDEFFLLLPKRR------------------------RWDDEGPFLMYIDKIYSVTGVGT-VVSGSVKSGILHV 377 (527)
T ss_pred ---cHHHHHHHHHhCCccc------------------------ccCCCCCeEEEEEeeEEEeeeEE-EEeeeEEeeeecc
Confidence 0236666667776541 12456899999999999999998 9999999999999
Q ss_pred CCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce
Q 003804 398 GLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA 457 (794)
Q Consensus 398 g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~gl~~~~~~tg 457 (794)
||++++ ||+ +..+++..+|++|.. +...|++|.||+|+.+ .|+..-...-|
T Consensus 378 gd~vll-GP~----~~G~fr~v~vkSIem----h~~rvdsa~aG~iig~Al~gv~~e~lerG 430 (527)
T COG5258 378 GDTVLL-GPF----KDGKFREVVVKSIEM----HHYRVDSAKAGSIIGIALKGVEKEELERG 430 (527)
T ss_pred CCEEEE-ccC----CCCcEEEEEEEEEEE----eeEEeccccCCcEEEEEecccCHHHHhcc
Confidence 999985 544 233567788888875 5688999999999765 46554222445
No 69
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.87 E-value=3.5e-22 Score=198.25 Aligned_cols=132 Identities=67% Similarity=1.068 Sum_probs=114.1
Q ss_pred CcEEEEEeecccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCC----------------C-----------
Q 003804 551 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR----------------D----------- 603 (794)
Q Consensus 551 ~p~V~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~----------------~----------- 603 (794)
+|.|+|||||.+.+...+..+++++|++++++++|||.++.+.|+.|...-+ +
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 6999999999998876777789999999999999999887777766532100 0
Q ss_pred --------------Cccc----hHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHH
Q 003804 604 --------------DPKY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 665 (794)
Q Consensus 604 --------------~~~~----~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 665 (794)
...+ .++++++|++||++|+++|||||+||+||+|+|.|+.+|.+..++..+++++|+|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 0013 6788999999999999999999999999999999999998767788899999999999
Q ss_pred HHHHHhcCCceecCeEE
Q 003804 666 YASQLTAKPRLLEPVYL 682 (794)
Q Consensus 666 ~~al~~a~~~llEPi~~ 682 (794)
++|+++|+|+||||||.
T Consensus 161 ~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 161 YAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHhhCCCEEEccccC
Confidence 99999999999999984
No 70
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=1.3e-22 Score=173.67 Aligned_cols=80 Identities=54% Similarity=1.049 Sum_probs=75.9
Q ss_pred cCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccC
Q 003804 678 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 757 (794)
Q Consensus 678 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~ 757 (794)
||||+|+|++|++++|+|+++|++|||+|++++..+++..+.|+|++|++|+|||+++||++|+|+|.|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998876664458999999999999999999999999999999999999986
No 71
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=3e-20 Score=215.73 Aligned_cols=64 Identities=31% Similarity=0.391 Sum_probs=61.3
Q ss_pred EEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 92 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 92 inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++|||||||.+|...+.++++.+|++++|||+.+|+..||..++..+...++|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 7999999999999999999999999999999999999999999999988999999999999985
No 72
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.8e-22 Score=207.87 Aligned_cols=152 Identities=20% Similarity=0.287 Sum_probs=127.1
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (794)
...+|+.+ +||+|+||||+.+.+++..|.++.. ..++ ++++|...+||++|-|+......|+
T Consensus 77 k~hvn~vf---ighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 77 KEHVNAVF---IGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCceEEE---EEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 34689999 9999999999999999999988764 1222 5799999999999999999999888
Q ss_pred eecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-------cchhHHHHHHHHHhcCC
Q 003804 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (794)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-------v~~qt~~~~~~~~~~~~ 143 (794)
.. ..+++++|+|||..|..+++.++.+||.+++|++|..| -..||+++...+...++
T Consensus 154 te----------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv 217 (501)
T KOG0459|consen 154 TE----------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV 217 (501)
T ss_pred ec----------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc
Confidence 75 78999999999999999999999999999999999865 35699999999999998
Q ss_pred c-cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhh
Q 003804 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA 182 (794)
Q Consensus 144 ~-~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (794)
. .|+++||||.+ ..++. .+++.++.+++...+.
T Consensus 218 ~~lVv~vNKMddP----tvnWs--~eRy~E~~~k~~~fLr 251 (501)
T KOG0459|consen 218 KHLIVLINKMDDP----TVNWS--NERYEECKEKLQPFLR 251 (501)
T ss_pred ceEEEEEEeccCC----ccCcc--hhhHHHHHHHHHHHHH
Confidence 6 55899999998 43322 3456666666665554
No 73
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.83 E-value=9.5e-20 Score=184.25 Aligned_cols=143 Identities=34% Similarity=0.549 Sum_probs=120.0
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+|++ +|+.|+|||||+++|++..|.+.....-..+.+|+.+.|+.+|+|+......+.+.
T Consensus 3 r~i~i---vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~---------------- 63 (194)
T cd01891 3 RNIAI---IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK---------------- 63 (194)
T ss_pred cEEEE---EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC----------------
Confidence 47888 99999999999999998877665531112367899999999999999988888774
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHH
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~~ 168 (794)
++.+++||||||.+|...+..+++.+|++++|+|+.++...++..+++.+...++|+++++||+|+. ....+...+
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~----~~~~~~~~~ 139 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----DARPEEVVD 139 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHH
Confidence 7899999999999999999999999999999999999988888888888888899999999999997 555544444
Q ss_pred HHHHHH
Q 003804 169 TFQKVI 174 (794)
Q Consensus 169 ~~~~~~ 174 (794)
.+++.+
T Consensus 140 ~~~~~~ 145 (194)
T cd01891 140 EVFDLF 145 (194)
T ss_pred HHHHHH
Confidence 444443
No 74
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.83 E-value=6.9e-21 Score=165.54 Aligned_cols=83 Identities=36% Similarity=0.569 Sum_probs=78.2
Q ss_pred eecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccc
Q 003804 676 LLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDM 755 (794)
Q Consensus 676 llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~ 755 (794)
||||||+++|.||++++|+|+++|++|||.|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG--GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC--CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 69999999999999999999999999999999888643 4789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 003804 756 MSSDP 760 (794)
Q Consensus 756 ~~~~~ 760 (794)
+|+++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 99764
No 75
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.83 E-value=8e-21 Score=166.54 Aligned_cols=85 Identities=39% Similarity=0.535 Sum_probs=79.0
Q ss_pred ceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEecccc
Q 003804 675 RLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 754 (794)
Q Consensus 675 ~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~ 754 (794)
+||||||+++|.+|++++|+|+++|++|||+|.++... +++++.|+|.+|+++++||.++||++|+|+|.|++.|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 58999999999999999999999999999999999887 33699999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003804 755 MMSSDP 760 (794)
Q Consensus 755 ~~~~~~ 760 (794)
++++++
T Consensus 80 ~~~~~~ 85 (89)
T PF00679_consen 80 PVPGDI 85 (89)
T ss_dssp EESHHH
T ss_pred ECCCCh
Confidence 999875
No 76
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.5e-19 Score=184.21 Aligned_cols=128 Identities=24% Similarity=0.311 Sum_probs=105.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
+|+++ +||+|+|||||+.+|-. .|++..-|..++-++||||.+.....+....+ ..-..+.
T Consensus 8 ~N~Gi---LGHvDSGKTtLarals~---------~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~p-------arLpq~e 68 (522)
T KOG0461|consen 8 LNLGI---LGHVDSGKTTLARALSE---------LGSTAAFDKHPQSTERGITLDLGFSTMTVLSP-------ARLPQGE 68 (522)
T ss_pred eeeee---EeeccCchHHHHHHHHh---------hccchhhccCCcccccceeEeecceeeecccc-------cccCccc
Confidence 66666 99999999999999932 34456778889999999999887665544311 1112334
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
...++++|||||..++..++.+....|.+++|||+..|.+.||.+.+-.....-.+.++++||+|..
T Consensus 69 ~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~l 135 (522)
T KOG0461|consen 69 QLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVL 135 (522)
T ss_pred cceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccc
Confidence 5789999999999999999999999999999999999999999998877766777889999999986
No 77
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.82 E-value=2.3e-20 Score=160.34 Aligned_cols=80 Identities=66% Similarity=1.204 Sum_probs=76.0
Q ss_pred cCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccC
Q 003804 678 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 757 (794)
Q Consensus 678 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~ 757 (794)
||||+++|++|++++|+|+++|++|||.|.+++..++++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999998876555569999999999999999999999999999999999999986
No 78
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=4.8e-19 Score=176.21 Aligned_cols=131 Identities=39% Similarity=0.588 Sum_probs=113.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
||++ +||+|+|||||+++|++..|.+... .....++|+.+.|+++|+|+....+.+.|.. .+.++
T Consensus 2 ni~~---vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~ 66 (179)
T cd01890 2 NFSI---IAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQE 66 (179)
T ss_pred cEEE---EeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEec-----------CCCCc
Confidence 6888 9999999999999999998877652 1124688999999999999998888777741 13357
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+.++|||||||.+|...+..+++.+|++|+|+|+.++...++...|..+...++|.++++||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 67 YLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred EEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 889999999999999999999999999999999999998899888888777889999999999987
No 79
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.81 E-value=4e-20 Score=157.96 Aligned_cols=78 Identities=26% Similarity=0.529 Sum_probs=74.5
Q ss_pred cCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccC
Q 003804 678 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 757 (794)
Q Consensus 678 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~ 757 (794)
||||+++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999988654 579999999999999999999999999999999999999986
No 80
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=5.4e-18 Score=196.08 Aligned_cols=128 Identities=23% Similarity=0.217 Sum_probs=89.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc--ccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--ERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~ 86 (794)
.-|++ +||+|||||||+++|....-... ...|+|.......+.+............ ..+
T Consensus 5 piV~I---iG~~d~GKTSLln~l~~~~v~~~----------------e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~ 65 (590)
T TIGR00491 5 PIVSV---LGHVDHGKTTLLDKIRGSAVAKR----------------EAGGITQHIGATEIPMDVIEGICGDLLKKFKIR 65 (590)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhccccccc----------------cCCceecccCeeEeeeccccccccccccccccc
Confidence 45778 99999999999999964322111 1123444333333322210000000000 000
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+...++|||||||.+|...+.++++.+|++++|+|+.+|+..||..+++.+...++|.++++||+|+.
T Consensus 66 ~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 66 LKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred cccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 112348999999999999999999999999999999999999999999999888999999999999986
No 81
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.80 E-value=6.7e-20 Score=154.63 Aligned_cols=73 Identities=41% Similarity=0.674 Sum_probs=68.3
Q ss_pred CCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcC
Q 003804 477 VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 551 (794)
Q Consensus 477 ~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~ 551 (794)
|+|+++++|+|.++.|.++|.+||++|++|||+|++.+| +|||++|+||||+||||++++|+++| |++|++++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~--~v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF--GVEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT--CEBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH--CCeeEecC
Confidence 499999999999999999999999999999999999997 89999999999999999999999999 99999974
No 82
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=6.9e-20 Score=156.49 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=74.2
Q ss_pred cCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccC
Q 003804 678 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 757 (794)
Q Consensus 678 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~ 757 (794)
||||+++|+||++++|+|+++|++|||+|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++|.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999888654 589999999999999999999999999999999999999974
No 83
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=1.9e-19 Score=183.37 Aligned_cols=131 Identities=25% Similarity=0.238 Sum_probs=103.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecch----hhhhc----
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD----AALKS---- 80 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~----~~~~~---- 80 (794)
++|++ +||.|||||||+++| .| ..+|..+.|++||+|+..+...+.|.... +....
T Consensus 1 ~~i~~---~g~~~~GKttL~~~l-----------~~--~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (203)
T cd01888 1 INIGT---IGHVAHGKSTLVKAL-----------SG--VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSK 64 (203)
T ss_pred CEEEE---ECCCCCCHHHHHHHH-----------hC--CCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccc
Confidence 47888 999999999999999 33 34788899999999999998888774110 00000
Q ss_pred ---cccccCC------CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCC-CcchhHHHHHHHHHhcCCc-cEEEE
Q 003804 81 ---YRGERQG------NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIR-PVLTV 149 (794)
Q Consensus 81 ---~~~~~~~------~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~-gv~~qt~~~~~~~~~~~~~-~iv~i 149 (794)
.....+. ..++++|||||||.+|..++..+++.+|++++|||+.+ +...++..+|..+...+++ +++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivv 144 (203)
T cd01888 65 EDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQ 144 (203)
T ss_pred cccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEE
Confidence 0000111 23899999999999999999999999999999999998 4778998888888777774 67899
Q ss_pred ecCccc
Q 003804 150 NKMDRC 155 (794)
Q Consensus 150 NKiD~~ 155 (794)
||+|+.
T Consensus 145 NK~Dl~ 150 (203)
T cd01888 145 NKIDLV 150 (203)
T ss_pred Echhcc
Confidence 999987
No 84
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=4.7e-19 Score=182.52 Aligned_cols=140 Identities=24% Similarity=0.243 Sum_probs=111.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCc-eeecCChhhHhhhCcccccceEEEEeecchhhhhcc-------
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY------- 81 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~------- 81 (794)
+|++ +||.++|||||+++|.. +..+.. .|. ...+|.+.+|++||+|+..+...+.+...+......
T Consensus 1 ~v~~---~G~~~~GKttl~~~~~~--~~~~~~-~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~ 74 (224)
T cd04165 1 RVAV---VGNVDAGKSTLLGVLTQ--GELDNG-RGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSES 74 (224)
T ss_pred CEEE---ECCCCCCHHHHHHHHHh--CCcCCC-CCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccc
Confidence 3677 99999999999999953 444332 333 358899999999999988777667665433111100
Q ss_pred -ccccCCCceEEEEEcCCCccchHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 82 -RGERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 82 -~~~~~~~~~~inlIDTPGh~df~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
......+++.++|||||||.+|..++.+++. .+|++++|||+.+|+..++++++..+...++|.++++||+|+.
T Consensus 75 ~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 75 DIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred cceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 0112345789999999999999999999986 7999999999999999999999999999999999999999986
No 85
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.79 E-value=1.5e-19 Score=154.48 Aligned_cols=78 Identities=32% Similarity=0.578 Sum_probs=74.4
Q ss_pred cCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccC
Q 003804 678 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 757 (794)
Q Consensus 678 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~ 757 (794)
||||+|+|+||++++|+|+++|++|||.|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG--GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC--CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999988653 578999999999999999999999999999999999999986
No 86
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.78 E-value=3.1e-19 Score=152.74 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=73.9
Q ss_pred cCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEecccccc
Q 003804 678 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM 756 (794)
Q Consensus 678 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~ 756 (794)
||||+++|.||++++|+|+++|++|||+|.+++..++ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~-~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGN-GRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCC-CEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 8999999999999999999999999999999887542 57899999999999999999999999999999999999985
No 87
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=2.2e-18 Score=174.05 Aligned_cols=133 Identities=25% Similarity=0.305 Sum_probs=108.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
+||++ +||+|+|||||+++|+...+ ...+|...+|++||+|++....++.|..... .+.....+++
T Consensus 1 ~~i~i---~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~--~~~~~~~~~~ 66 (192)
T cd01889 1 VNVGV---LGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH--LRELINPGEE 66 (192)
T ss_pred CeEEE---EecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEeccccc--cccccccccc
Confidence 47888 99999999999999975421 2467888999999999999988888752110 0000112344
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.+++||||||.+|..++..+++.+|++++|+|+.+|.+.++.+.+..+...++|+++++||+|+.
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 7899999999999999999999999999999999999999999887777777788999999999987
No 88
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.77 E-value=7.1e-19 Score=150.80 Aligned_cols=79 Identities=38% Similarity=0.602 Sum_probs=75.0
Q ss_pred cCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccC
Q 003804 678 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 757 (794)
Q Consensus 678 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~ 757 (794)
||||+++|++|++++|+|+++|++|||+|.+++..+ ++.+.|+|.+|+++++||.++||++|+|+|++++.|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999988754 3589999999999999999999999999999999999999985
No 89
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.76 E-value=1e-18 Score=149.76 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=73.1
Q ss_pred cCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhh-hCchHHHhhhcCCceEeeeEecccccc
Q 003804 678 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDMM 756 (794)
Q Consensus 678 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~~y~~~Lrs~T~G~g~~~~~f~~y~~~ 756 (794)
|||++++|.||++++|+|+++|++|||+|.+++..++ +.+.|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~-~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDA-NRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCC-CeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999999886542 47899999999999 599999999999999999999999985
No 90
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.73 E-value=5.9e-17 Score=162.12 Aligned_cols=127 Identities=40% Similarity=0.561 Sum_probs=109.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|..|+|||||+++|+..............+.++....|+.+++|+......+.+. +
T Consensus 1 ~v~v---~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~ 61 (189)
T cd00881 1 NVGI---AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP----------------D 61 (189)
T ss_pred CEEE---EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC----------------C
Confidence 4778 99999999999999998776654432222356788889999999998877777664 7
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..++||||||+.+|......+++.+|++++|+|+.++...+....+..+...++|+++++||+|+.
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 899999999999999999999999999999999999998888888888888899999999999997
No 91
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.72 E-value=2e-17 Score=153.88 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=87.8
Q ss_pred cEEEEEeecccccc-ee----EeecCCCceeEEEEEEeeCC---ccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHH
Q 003804 552 PVVSFRETVLEKSC-RT----VMSKSPNKHNRLYMEARPLE---EGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWAS 623 (794)
Q Consensus 552 p~V~yrETi~~~~~-~~----~~~~~~~~~~~v~~~~ePl~---~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~ 623 (794)
|+|+|||||+.+.+ .. .+..+...++++.++++|.+ ..+.+.+.++. +.++++++|++||++|+
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~~--------l~~~~~~ai~~G~~~a~ 72 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLEGGGNIFVDETEGGQ--------LPKEFQDAIEEGFQSAL 72 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETSTSSEEEEESSSTTS--------SGGGGHHHHHHHHHHHH
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecccCCceeeecccccc--------ccHHHHHHHhhhhhhee
Confidence 89999999999887 43 22345566789999999986 22333333332 67788899999999999
Q ss_pred HcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcC
Q 003804 624 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 673 (794)
Q Consensus 624 ~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~ 673 (794)
++|||+||||+||+|+|.|+.+|. .++...+|++|+++||++||++|+
T Consensus 73 ~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 73 SSGPLCGYPVTDVKVTLTDGEYHE--VDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp CSSTTTSSEB-SEEEEEEEEEC-T--TTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred cccccCCCceEEEEEEEEEeeecC--CcCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999995 445566789999999999999985
No 92
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.70 E-value=1.1e-16 Score=141.88 Aligned_cols=94 Identities=37% Similarity=0.681 Sum_probs=80.8
Q ss_pred eEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 368 lva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
++|+|||+.++++.|.+++|+|||||+|++||.|++++++++.+..+....++|.+|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57999999999987666999999999999999999987554433223344589999999999999999999999999999
Q ss_pred ccccccccceeeec
Q 003804 448 GLDQYITKNATLTN 461 (794)
Q Consensus 448 gl~~~~~~tgTl~~ 461 (794)
|+++.+++.+|+++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999888888863
No 93
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.69 E-value=1e-16 Score=166.53 Aligned_cols=310 Identities=19% Similarity=0.271 Sum_probs=212.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCce-eecCChhhHhhhCcccccceEEEEeecchhhhhcccc-
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDV-RMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG- 83 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~-~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~- 83 (794)
+-..+|++ +|.+|+|||||+..| ..|.+++. .|.+ +.+..+.+|.|.|-|-....--+.|...++.+.....
T Consensus 131 F~E~RVAV---VGNVDAGKSTLLGVL--THgeLDnG-RG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~H 204 (641)
T KOG0463|consen 131 FIEARVAV---VGNVDAGKSTLLGVL--THGELDNG-RGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPH 204 (641)
T ss_pred ceeEEEEE---EecccCCcceeEeee--eecccccC-ccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCC
Confidence 44679999 999999999999988 56666653 3433 3678889999999998888888888765543322211
Q ss_pred --------ccCCCceEEEEEcCCCccchHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCc
Q 003804 84 --------ERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 84 --------~~~~~~~~inlIDTPGh~df~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD 153 (794)
-.+.....|+|||.+||..|.+.+..++. ..|.++|+|.++.|+-..|++++..+....+|..+|++|||
T Consensus 205 g~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKID 284 (641)
T KOG0463|consen 205 GHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKID 284 (641)
T ss_pred CCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeec
Confidence 23445578999999999999999988886 68999999999999999999999999999999999999999
Q ss_pred cchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceee--eccCccceeeehhhHHHHHhhhcCCChHh
Q 003804 154 RCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVA--FSAGLHGWAFTLTNFAKMYASKFGVDESK 231 (794)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~--~~s~~~g~~~~~~~~a~~~~~~~~id~~~ 231 (794)
++ .++ .+++.+..+...+.+ |....+| ..|- |.
T Consensus 285 MC----PAN------iLqEtmKll~rllkS------------~gcrK~PvlVrs~---------------------DD-- 319 (641)
T KOG0463|consen 285 MC----PAN------ILQETMKLLTRLLKS------------PGCRKLPVLVRSM---------------------DD-- 319 (641)
T ss_pred cC----cHH------HHHHHHHHHHHHhcC------------CCcccCcEEEecc---------------------cc--
Confidence 98 554 355555555444432 2222122 1111 00
Q ss_pred HHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHH
Q 003804 232 MMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMK 311 (794)
Q Consensus 232 l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~ 311 (794)
+. -.+..|....+.||+++.. ++.+.
T Consensus 320 -----------------Vv-------~~A~NF~Ser~CPIFQvSN--------------------VtG~N---------- 345 (641)
T KOG0463|consen 320 -----------------VV-------HAAVNFPSERVCPIFQVSN--------------------VTGTN---------- 345 (641)
T ss_pred -----------------eE-------EeeccCccccccceEEecc--------------------ccCCC----------
Confidence 00 0112233333444442221 11111
Q ss_pred HHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEE
Q 003804 312 RVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVF 391 (794)
Q Consensus 312 ~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~ 391 (794)
-+||.++.+.+|.-.. .+.+.|.-..|-.+++.+..|. ++-+..+
T Consensus 346 ----------L~LLkmFLNlls~R~~------------------------~~E~~PAeFQIDD~Y~VpGVGT-vvSGT~L 390 (641)
T KOG0463|consen 346 ----------LPLLKMFLNLLSLRRQ------------------------LNENDPAEFQIDDIYWVPGVGT-VVSGTLL 390 (641)
T ss_pred ----------hHHHHHHHhhcCcccc------------------------cccCCCcceeecceEecCCcce-Eeeccee
Confidence 2477777777765421 1234566778888999999998 9999999
Q ss_pred eeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEE--EEeccccccccce-eeecCCC
Q 003804 392 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV--AMVGLDQYITKNA-TLTNEKE 464 (794)
Q Consensus 392 sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~--ai~gl~~~~~~tg-Tl~~~~~ 464 (794)
+|+++-+|.+. +||.. ..++-+..|+.|. +++.+|..+.+|+-. |+.+++....+-| .+.+++.
T Consensus 391 ~GtIrLND~Ll-LGPd~----~G~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~l 457 (641)
T KOG0463|consen 391 SGTIRLNDILL-LGPDS----NGDFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKL 457 (641)
T ss_pred eeeEEeccEEE-ecCCC----CCCeeeeehhhhh----hccccceEEeccchhhhHhhhcchhhhhcceEEecCCC
Confidence 99999999987 45432 2234455666655 478899999999984 5556666555666 6666553
No 94
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.68 E-value=6.1e-15 Score=178.28 Aligned_cols=125 Identities=22% Similarity=0.208 Sum_probs=91.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc--ccCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--ERQG 87 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~~ 87 (794)
.++-|+ +.| ||||+++| .++ .+ ..+...|||....+..+.++........... ....
T Consensus 465 ~~~~~~-~~~----KTtLLD~i-----------R~t-~v----~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~ 523 (1049)
T PRK14845 465 FIANGI-LVH----NTTLLDKI-----------RKT-RV----AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEI 523 (1049)
T ss_pred ceeeee-ecc----cccHHHHH-----------hCC-Cc----ccccCCCceeccceEEEEecccccccccccccccccC
Confidence 344444 555 99999999 221 01 3344679999998887776421100000000 0011
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+-..++|||||||.+|.....++++.+|++++|||+.+|++.||.+++..+...++|.++++||+|+.
T Consensus 524 ~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 524 KIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred CcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 12348999999999999988899999999999999999999999999999999999999999999985
No 95
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.68 E-value=9.9e-17 Score=147.45 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=86.6
Q ss_pred EEEEeecccccceeEeecCCCc--eeEEEEEEeeCCcc----chhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCC
Q 003804 554 VSFRETVLEKSCRTVMSKSPNK--HNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGA 627 (794)
Q Consensus 554 V~yrETi~~~~~~~~~~~~~~~--~~~v~~~~ePl~~~----~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gp 627 (794)
|+|||||+++++...+....++ +++|+++++|++.+ |.+.+.+|.+| +++.++|++|+++++++||
T Consensus 1 VaYRETI~~~~~~~~~~~~~~~~~~a~v~l~veP~~~g~g~~f~~~~~~~~ip--------~~~~~aie~g~~~al~~G~ 72 (115)
T cd01684 1 VIYKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRGSGLQYESEVSLGSLP--------RSFQNAVEETVRETLQQGL 72 (115)
T ss_pred CceEEEeCCcEEEEEEEccCCCcEEEEEEEEEEECCCCCCcEEEEEecCCcCC--------HHHHHHHHHHHHHHHhcCC
Confidence 6899999998775444443344 89999999998753 44555556554 4455689999999999999
Q ss_pred cCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcC
Q 003804 628 LAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAK 673 (794)
Q Consensus 628 l~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~ 673 (794)
| |+||+||+|+|.|+.+|. ||+..+ |+.|+++|+++|+.+|+
T Consensus 73 l-G~pv~dv~V~l~~~~~h~~~ss~~a---f~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 73 Y-GWEVTDCKVTLTYGRYHSPVSTAAD---FRELTPRVLRQALKKAG 115 (115)
T ss_pred C-CCCEeeEEEEEEEeeecCCCCCHHH---HHHHHHHHHHHHHHhcC
Confidence 9 999999999999999996 665554 56899999999999874
No 96
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.66 E-value=3.7e-16 Score=135.63 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=73.4
Q ss_pred CCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEE
Q 003804 366 GPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA 445 (794)
Q Consensus 366 ~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~a 445 (794)
+||+++|||+.++++.|+ ++|+|||||+|++|+.|++.. ++ .+|+.+|+.++|.+..++++|.|||||+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~~-----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~a 70 (85)
T cd03690 2 SELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVNR-----EE-----KIKITELRVFNNGEVVTADTVTAGDIAI 70 (85)
T ss_pred CCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeCC-----Cc-----EEEeceeEEEeCCCeEECcEECCCCEEE
Confidence 689999999999999887 999999999999999998532 22 2699999999999999999999999999
Q ss_pred Eeccccccccce-eee
Q 003804 446 MVGLDQYITKNA-TLT 460 (794)
Q Consensus 446 i~gl~~~~~~tg-Tl~ 460 (794)
+.|++++ .+| ||+
T Consensus 71 i~gl~~~--~~Gdtl~ 84 (85)
T cd03690 71 LTGLKGL--RVGDVLG 84 (85)
T ss_pred EECCCCC--cCccccC
Confidence 9999987 677 774
No 97
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.66 E-value=1.2e-15 Score=148.95 Aligned_cols=115 Identities=31% Similarity=0.301 Sum_probs=93.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|++|+|||||+++|. |. ..+..+.|..+++|+......+.+. .+
T Consensus 2 ~i~i---~G~~~~GKssl~~~l~-----------~~--~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~ 50 (164)
T cd04171 2 IIGT---AGHIDHGKTTLIKALT-----------GI--ETDRLPEEKKRGITIDLGFAYLDLP---------------SG 50 (164)
T ss_pred EEEE---EecCCCCHHHHHHHHh-----------Cc--ccccchhhhccCceEEeeeEEEEec---------------CC
Confidence 5777 9999999999999993 21 1233456677888887776655553 15
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCC-ccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~-~~iv~iNKiD~~ 155 (794)
..+++|||||+.+|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+.
T Consensus 51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 689999999999999999999999999999999999888888887776666676 888999999987
No 98
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.60 E-value=3.2e-15 Score=129.36 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=72.3
Q ss_pred eEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 368 lva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
|+|+|||++++++.|+ ++|+|||||+|++||.|++... ++ .+++.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTNT----GK-----KERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECCC----CC-----EEEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 5799999999999887 9999999999999999996532 22 269999999999999999999999999999
Q ss_pred ccccccccce-eeec
Q 003804 448 GLDQYITKNA-TLTN 461 (794)
Q Consensus 448 gl~~~~~~tg-Tl~~ 461 (794)
|++++ ++| |||.
T Consensus 71 gl~~~--~~Gdtl~~ 83 (83)
T cd04092 71 GLKQT--RTGDTLVT 83 (83)
T ss_pred CCCCc--ccCCEEeC
Confidence 99987 677 7763
No 99
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.59 E-value=6.1e-15 Score=136.27 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=85.6
Q ss_pred EEeecccccceeE----eecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCC
Q 003804 556 FRETVLEKSCRTV----MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEE 631 (794)
Q Consensus 556 yrETi~~~~~~~~----~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~ 631 (794)
|||||.++++... ...+..+|++|+++++|++.+..+.+... ++.. .+.++++++|++||++|+++|||||+
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~~~-~~~~---~~~~~~~~ai~~g~~~a~~~Gpl~g~ 76 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERGSGVRVVDP-VDEE---LLPAELKEAVEEGIRDACASGPLTGY 76 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCCCCcEEEEe-cCCC---cCCHHHHHHHHHHHHHHHhcCcccCC
Confidence 9999999876432 23345678999999999986432222211 1111 15577888999999999999999999
Q ss_pred CeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcC
Q 003804 632 NMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 673 (794)
Q Consensus 632 pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~ 673 (794)
||+|++|+|.++.+|.+ ++...+|++|++.||++||++|+
T Consensus 77 pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 77 PLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred ceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999963 33456788999999999998874
No 100
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.57 E-value=1.6e-14 Score=127.77 Aligned_cols=90 Identities=50% Similarity=0.905 Sum_probs=73.8
Q ss_pred eEEEEEEeeecC-CCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE
Q 003804 368 LMLYVSKMIPAS-DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (794)
Q Consensus 368 lva~VfK~~~~~-~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai 446 (794)
++++|||+.+++ +.|+ ++|+|||||+|++|+.|++.++++.....+...++++.+||.++|.+..++++|.|||||+|
T Consensus 1 ~v~~v~Ki~~~~~~~g~-la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 1 LVMYVTKMVPTPDKGGF-IAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CeEEEEeCeECCCCCEE-EEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 478999999998 5554 99999999999999999987644322122233457999999999999999999999999999
Q ss_pred eccccccccceeee
Q 003804 447 VGLDQYITKNATLT 460 (794)
Q Consensus 447 ~gl~~~~~~tgTl~ 460 (794)
.|++++ ++|+++
T Consensus 80 ~g~~~~--~~g~~~ 91 (93)
T cd03700 80 VGLDQL--KSGTTA 91 (93)
T ss_pred ECCccC--ceEeEe
Confidence 999886 677554
No 101
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.57 E-value=9.7e-15 Score=126.53 Aligned_cols=80 Identities=28% Similarity=0.451 Sum_probs=70.8
Q ss_pred EEEEEeee---cCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE
Q 003804 370 LYVSKMIP---ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (794)
Q Consensus 370 a~VfK~~~---~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai 446 (794)
|+|||+.+ +++.|+ ++|+|||||+|++||.|++.. .++ .+++++|+.++|.+..+++++.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~~~----~~~-----~~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKHVR----LGK-----EVRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEEcC----CCC-----EEEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 58999999 999888 999999999999999999542 232 27999999999999999999999999999
Q ss_pred eccccccccce-eeec
Q 003804 447 VGLDQYITKNA-TLTN 461 (794)
Q Consensus 447 ~gl~~~~~~tg-Tl~~ 461 (794)
.|++++ .+| |||+
T Consensus 71 ~gl~~~--~~Gdtl~~ 84 (85)
T cd03689 71 VNPGNF--QIGDTLTE 84 (85)
T ss_pred ECCCCc--cccCEeeC
Confidence 999987 677 8874
No 102
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.56 E-value=1.3e-14 Score=125.61 Aligned_cols=81 Identities=32% Similarity=0.433 Sum_probs=71.9
Q ss_pred eEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 368 lva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
++|+|||+.++++.|+ ++|+|||||+|++||.|++.+ .++ .+++.+|+.++|.+..+++++.|||||++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~----~~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNST----KGK-----KERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECC----CCc-----EEEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 5799999999999887 999999999999999999754 222 268999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003804 448 GLDQYITKNA-TLT 460 (794)
Q Consensus 448 gl~~~~~~tg-Tl~ 460 (794)
|++++ .+| |++
T Consensus 71 g~~~~--~~Gdtl~ 82 (83)
T cd04088 71 GLKDT--ATGDTLC 82 (83)
T ss_pred CCCCC--ccCCEee
Confidence 99986 677 775
No 103
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.56 E-value=1.8e-14 Score=156.80 Aligned_cols=115 Identities=25% Similarity=0.338 Sum_probs=100.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
.+++||| +|++++|||||+|+|+.....|....+| +|.++-...++|+
T Consensus 177 ~~ikiai---iGrPNvGKSsLiN~ilgeeR~Iv~~~aG---------------TTRD~I~~~~e~~-------------- 224 (444)
T COG1160 177 DPIKIAI---IGRPNVGKSSLINAILGEERVIVSDIAG---------------TTRDSIDIEFERD-------------- 224 (444)
T ss_pred CceEEEE---EeCCCCCchHHHHHhccCceEEecCCCC---------------ccccceeeeEEEC--------------
Confidence 4689999 9999999999999998888877766565 5777777777775
Q ss_pred CCceEEEEEcCCCcc----------chH-HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHV----------DFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~----------df~-~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+.++.+|||+|.. .|. ..+..++..+|.+++|+||.+|+..|..++...+.+.+.+.++++||||+.
T Consensus 225 --~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 225 --GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV 302 (444)
T ss_pred --CeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 8899999999953 233 347788899999999999999999999999999999999999999999987
No 104
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=3.5e-14 Score=161.81 Aligned_cols=115 Identities=25% Similarity=0.296 Sum_probs=91.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++|+|||||+++|++....+... ..|.|..+....+.+.
T Consensus 172 ~~~~v~i---vG~~n~GKStlin~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~~-------------- 219 (435)
T PRK00093 172 EPIKIAI---IGRPNVGKSSLINALLGEERVIVSD---------------IAGTTRDSIDTPFERD-------------- 219 (435)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHhCCCceeecC---------------CCCceEEEEEEEEEEC--------------
Confidence 4589999 9999999999999997655433322 2356666555555553
Q ss_pred CCceEEEEEcCCCccch-----------HHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDF-----------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df-----------~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.+. ...+.++++.+|++|+|+|+.+|...|+..+++++...++|+++++||+|+.
T Consensus 220 --~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 220 --GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred --CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 678999999997432 1234568899999999999999999999999999999999999999999986
No 105
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=3.8e-14 Score=147.57 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=119.7
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCcee-ecCChhhHhhhCcccccceEEEEeecchhhhhcccc-
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG- 83 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~-~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~- 83 (794)
+-.++|++ +|..|+|||||+..| ..|.+++. .|++| .+..+++|.+.|-|-..+.-.+.|+.-++.+..-.+
T Consensus 165 fievRvAV---lGg~D~GKSTLlGVL--TQgeLDnG-~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~ 238 (591)
T KOG1143|consen 165 FIEVRVAV---LGGCDVGKSTLLGVL--TQGELDNG-NGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNM 238 (591)
T ss_pred ceEEEEEE---ecCcccCcceeeeee--ecccccCC-CCeeeeehhcchhhhccCcccccchhcccccccccccchhhcc
Confidence 34679999 999999999999998 66777664 56555 678889999999998888888878643322221111
Q ss_pred ----ccCCCceEEEEEcCCCccchHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 84 ----ERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 84 ----~~~~~~~~inlIDTPGh~df~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
-.+..++.++|||.+||..|...++.++. ..|.|+|||+|..|+.+.|++++..+.+.++|+.++++|||+.
T Consensus 239 taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 239 TAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLV 316 (591)
T ss_pred cHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccc
Confidence 23456789999999999999999999997 4699999999999999999999999999999999999999997
No 106
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.55 E-value=3.7e-14 Score=139.20 Aligned_cols=113 Identities=27% Similarity=0.303 Sum_probs=87.4
Q ss_pred EEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCce
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (794)
|++ +|+.++|||||+++|....-. . ...+++|.......+.+. ...++
T Consensus 3 i~i---iG~~~~GKtsli~~l~~~~~~--~--------------~~~~~~t~~~~~~~~~~~-------------~~~~~ 50 (168)
T cd01887 3 VTV---MGHVDHGKTTLLDKIRKTNVA--A--------------GEAGGITQHIGAFEVPAE-------------VLKIP 50 (168)
T ss_pred EEE---EecCCCCHHHHHHHHHhcccc--c--------------ccCCCeEEeeccEEEecc-------------cCCcc
Confidence 677 999999999999999532110 0 012344444333333331 01367
Q ss_pred EEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 91 ~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+++|||||+.+|......+++.+|++++|+|+.++...++...+..+...++|.++++||+|+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 51 GITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred eEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 89999999999998888889999999999999999998899888888888999999999999987
No 107
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.54 E-value=2.7e-14 Score=122.97 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=69.4
Q ss_pred eEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 368 lva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
++|+|||+.+++. |+ ++|+|||||+|++||.|++.. .++ ++++.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~~----~~~-----~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNVR----TGK-----KVRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEcC----CCC-----EEEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999977 87 999999999999999999643 233 379999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003804 448 GLDQYITKNA-TLT 460 (794)
Q Consensus 448 gl~~~~~~tg-Tl~ 460 (794)
|++ + ++| ||+
T Consensus 70 g~~-~--~~Gdtl~ 80 (81)
T cd04091 70 GID-C--ASGDTFT 80 (81)
T ss_pred CCC-c--ccCCEec
Confidence 997 5 677 875
No 108
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.53 E-value=2.7e-14 Score=131.81 Aligned_cols=111 Identities=22% Similarity=0.185 Sum_probs=85.5
Q ss_pred EEeecccccceeE----eecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCC
Q 003804 556 FRETVLEKSCRTV----MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEE 631 (794)
Q Consensus 556 yrETi~~~~~~~~----~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~ 631 (794)
|||||+++++... ......++++|+++++|++.+....+... +.. .++.+++.++|.+||++++++||++|+
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g~g~~~~~~-~~~---~~lp~~~~~ai~~g~~~a~~~Gpl~G~ 76 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRGSGFEFVNK-IVG---GAIPKEYIPAVEKGFREALEKGPLAGY 76 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCCCCCEEEEe-ccC---CccCHHHHHHHHHHHHHHHhcCcccCC
Confidence 8999999866322 23356678999999999976432222221 110 116678888999999999999999999
Q ss_pred CeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcC
Q 003804 632 NMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAK 673 (794)
Q Consensus 632 pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~ 673 (794)
||+||+|+|.++.+|. |+. ...|+.|+++|+++|+.+|+
T Consensus 77 pv~~v~V~l~~~~~~~~~s~---~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 77 PVVDVKVTLYDGSYHDVDSS---EMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred ccccEEEEEEeceeecCCCC---HHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999996 554 44678999999999999874
No 109
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.53 E-value=3.6e-14 Score=131.83 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=83.7
Q ss_pred EEEEeecccccce----eEeecCCCceeEEEEEEeeCCccch--hhhccC-CCCCCCCccchHHhHHHHHHHHHHHHHcC
Q 003804 554 VSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEGLA--EAIDDG-RIGPRDDPKYLNEIKDSVVAGFQWASKEG 626 (794)
Q Consensus 554 V~yrETi~~~~~~----~~~~~~~~~~~~v~~~~ePl~~~~~--~~i~~g-~i~~~~~~~~~~~i~~~i~~g~~~a~~~G 626 (794)
|+|||||+++++. .....+.+++++|+++++|++.+.. ..++.. .... ...+++.++|++|+++|+++|
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~~~----~~p~~~~~ai~~g~~~al~~G 76 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSAIE----VLLKRIQEAVENGVHSALLQG 76 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCccCC----cChHHHHHHHHHHHHHHHHcC
Confidence 6899999998663 2334556778999999999975531 011111 1111 155677789999999999999
Q ss_pred CcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcC
Q 003804 627 ALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 673 (794)
Q Consensus 627 pl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~ 673 (794)
||+|+||+||+|+|.++.+|...+. ..++.|++.|+++|+.+|+
T Consensus 77 pl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~Aa~~a~~~al~~a~ 120 (120)
T cd01693 77 PLLGFPVQDVAITLHSLTIGPGTSP---TMISACASQCVQKALKSAG 120 (120)
T ss_pred CccCCceeeEEEEEEeCCcCCCCCH---HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999963221 2234779999999998874
No 110
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.4e-14 Score=158.67 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=92.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc--cc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--ER 85 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~ 85 (794)
..-+|| +||+|+|||-|++.+-.. +.... .+ -|||.......|....-....+.+.. ..
T Consensus 475 SPIcCi---lGHVDTGKTKlld~ir~t-NVqeg-ea--------------ggitqqIgAt~fp~~ni~e~tk~~~~~~K~ 535 (1064)
T KOG1144|consen 475 SPICCI---LGHVDTGKTKLLDKIRGT-NVQEG-EA--------------GGITQQIGATYFPAENIREKTKELKKDAKK 535 (1064)
T ss_pred CceEEE---eecccccchHHHHHhhcc-ccccc-cc--------------cceeeeccccccchHHHHHHHHHHHhhhhh
Confidence 345788 999999999999998221 11111 12 24555554443332110000111111 01
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+---+.+||||||..|..-..++...||.||+|||..+|+.+||.+-+..++..+.|+||++||+||+
T Consensus 536 ~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 536 RLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 1223357889999999999999999999999999999999999999999999999999999999999997
No 111
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.52 E-value=3.7e-14 Score=161.35 Aligned_cols=115 Identities=26% Similarity=0.285 Sum_probs=91.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++++|||||+++|+.....+... ..|.|.++....+.+.
T Consensus 171 ~~~~v~i---vG~~~~GKSsLin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~-------------- 218 (429)
T TIGR03594 171 GPIKIAI---IGRPNVGKSTLVNALLGEERVIVSD---------------IAGTTRDSIDIPFERN-------------- 218 (429)
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHCCCeeecCC---------------CCCceECcEeEEEEEC--------------
Confidence 3578999 9999999999999997544333221 2355666555555553
Q ss_pred CCceEEEEEcCCCccchH-----------HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~-----------~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+.++. ..+..+++.+|++|+|+|+.+|.+.++..+++.+...++|+++++||+|+.
T Consensus 219 --~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 219 --GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred --CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 6689999999975532 124567899999999999999999999999999999999999999999986
No 112
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.49 E-value=1.5e-13 Score=119.74 Aligned_cols=84 Identities=25% Similarity=0.442 Sum_probs=72.3
Q ss_pred eEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 368 lva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
|.|+|||+..+++.|+ ++|+|||||+|++||.|++..++ . +...+++.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~----~--~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD----G--KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC----C--CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 4689999999999887 99999999999999999976532 1 122368999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003804 448 GLDQYITKNA-TLT 460 (794)
Q Consensus 448 gl~~~~~~tg-Tl~ 460 (794)
|++++ .+| ||+
T Consensus 74 gl~~~--~~Gdtl~ 85 (86)
T cd03691 74 GIEDI--TIGDTIC 85 (86)
T ss_pred CCCCC--cccceec
Confidence 99887 667 765
No 113
>COG1159 Era GTPase [General function prediction only]
Probab=99.49 E-value=5e-13 Score=138.26 Aligned_cols=116 Identities=29% Similarity=0.311 Sum_probs=88.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.++-.||| +|++++|||||+|+|+...-.|.++.. +.-|.+-.+| ..
T Consensus 4 ~ksGfVaI---iGrPNvGKSTLlN~l~G~KisIvS~k~---------QTTR~~I~GI-------~t-------------- 50 (298)
T COG1159 4 FKSGFVAI---IGRPNVGKSTLLNALVGQKISIVSPKP---------QTTRNRIRGI-------VT-------------- 50 (298)
T ss_pred ceEEEEEE---EcCCCCcHHHHHHHHhcCceEeecCCc---------chhhhheeEE-------EE--------------
Confidence 46778999 999999999999999655444433222 2222221111 11
Q ss_pred CCCceEEEEEcCCCccc--------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~d--------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+++++.|+||||... ...++..++..+|.+++|||+.++.....+.++.++...+.|.++++||+|+.
T Consensus 51 -~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 51 -TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred -cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 1378999999999542 44567888999999999999999999999999998888778999999999987
No 114
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.1e-13 Score=140.78 Aligned_cols=146 Identities=25% Similarity=0.319 Sum_probs=105.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEE-eecch---hhhhcc--
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLY-YEMTD---AALKSY-- 81 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~---~~~~~~-- 81 (794)
|+||.- +||+.|||||++.++ .|- .+=....|-||.|||+....... |++++ .++.++
T Consensus 38 TiNIGT---IGHVAHGKSTvVkAi-----------SGv--~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 38 TINIGT---IGHVAHGKSTVVKAI-----------SGV--HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred eeeecc---eeccccCcceeeeee-----------ccc--eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 466655 999999999999988 552 12234678899999988766554 44333 111111
Q ss_pred ---------ccccCCCc------eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-cchhHHHHHHHHHhcCCcc
Q 003804 82 ---------RGERQGNE------YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIRP 145 (794)
Q Consensus 82 ---------~~~~~~~~------~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-v~~qt~~~~~~~~~~~~~~ 145 (794)
.|..-+.. .++.|+|||||.-++..|..+..+.|+|+|+|.+++. .++||.+++....-.+++.
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 22111111 4688999999999999999999999999999999986 7899999998887777765
Q ss_pred E-EEEecCccchhccCCCHHHHHHHHHHHHH
Q 003804 146 V-LTVNKMDRCFLELQVDGEEAYQTFQKVIE 175 (794)
Q Consensus 146 i-v~iNKiD~~~~~~~~~~~~~~~~~~~~~~ 175 (794)
| ++-||+|+. ..+++.++.+.+..
T Consensus 182 iiilQNKiDli------~e~~A~eq~e~I~k 206 (466)
T KOG0466|consen 182 IIILQNKIDLI------KESQALEQHEQIQK 206 (466)
T ss_pred EEEEechhhhh------hHHHHHHHHHHHHH
Confidence 5 789999998 33455555555443
No 115
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.47 E-value=8e-13 Score=129.78 Aligned_cols=114 Identities=26% Similarity=0.341 Sum_probs=83.8
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|+.....+... .++.|.......+.+
T Consensus 2 ~~~i~i---~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~---------------- 47 (174)
T cd01895 2 PIRIAI---IGRPNVGKSSLVNALLGEERVIVSD---------------IAGTTRDSIDVPFEY---------------- 47 (174)
T ss_pred CcEEEE---EcCCCCCHHHHHHHHhCccceeccC---------------CCCCccCceeeEEEE----------------
Confidence 467888 9999999999999996443222111 123344333333333
Q ss_pred CceEEEEEcCCCccchH-----------HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~-----------~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+..+++|||||+.++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 25678999999975541 123456789999999999999988888888888888889999999999987
No 116
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.45 E-value=2.9e-13 Score=130.92 Aligned_cols=108 Identities=25% Similarity=0.237 Sum_probs=81.1
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEEEc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlID 96 (794)
+|+.|+|||||+++|+........ ...++|.........+ +++.+++||
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~----------------~~~~~~i~D 51 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAIVE---------------DTPGVTRDRIYGEAEW----------------GGREFILID 51 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEeec---------------CCCCceeCceeEEEEE----------------CCeEEEEEE
Confidence 899999999999999532211100 0123343333333334 368899999
Q ss_pred CCCccchHH--------HHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 97 SPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 97 TPGh~df~~--------e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
|||+.++.. +....++.+|++++|+|+..+....+..+++.+...+.|+++++||+|+.
T Consensus 52 tpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 52 TGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccC
Confidence 999988543 55677899999999999999888888778888888889999999999997
No 117
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.45 E-value=4.2e-13 Score=131.74 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=80.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
||++ +|+.|+|||||+++|....+.. .|. ...+...|+......+.+. +
T Consensus 1 ~i~~---vG~~~~GKstLi~~l~~~~~~~----~~~--------~~~~~~~t~~~~~~~~~~~----------------~ 49 (167)
T cd04160 1 SVLI---LGLDNAGKTTFLEQLKTLFSKY----KGL--------PPSKITPTVGLNIGTIEVG----------------N 49 (167)
T ss_pred CEEE---EecCCCCHHHHHHHHhhhcccc----cCC--------cccccCCccccceEEEEEC----------------C
Confidence 4777 9999999999999996543210 110 0012233555555555553 7
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh-HHHHHHHHH----hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q-t~~~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
..+++||||||.+|.......++.+|++++|+|+.+.-... ....+..+. ..++|+++++||+|+.
T Consensus 50 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 50 ARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 89999999999999998899999999999999998653222 222333332 2478999999999986
No 118
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.43 E-value=4.8e-13 Score=116.48 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=67.3
Q ss_pred eEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 368 lva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
|.|+|||+.++++.|+ ++|+|||||+|++||.|++.. .++ ++++.+|+.+ +.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~~----~~~-----~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFMS----TGK-----EYEVEEVGIF-RPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEec----CCC-----eEEEEEEEEE-CCCccCCceECCCCEEEEE
Confidence 5799999999999997 999999999999999999643 232 2799999955 7778999999999999996
Q ss_pred -c---cccccccce-eeec
Q 003804 448 -G---LDQYITKNA-TLTN 461 (794)
Q Consensus 448 -g---l~~~~~~tg-Tl~~ 461 (794)
| ++++ .+| ||++
T Consensus 70 ~g~~~l~~~--~~Gdtl~~ 86 (86)
T cd03699 70 AGIKTVKDA--RVGDTITL 86 (86)
T ss_pred ccccccCcc--ccccEeeC
Confidence 4 5655 577 8763
No 119
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.43 E-value=5.7e-12 Score=144.57 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=87.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|++++|||||+++|+.....+... ..|+|.+.....+.+.
T Consensus 211 ~~kI~i---iG~~nvGKSSLin~l~~~~~~~~s~---------------~~gtT~d~~~~~~~~~--------------- 257 (472)
T PRK03003 211 PRRVAL---VGKPNVGKSSLLNKLAGEERSVVDD---------------VAGTTVDPVDSLIELG--------------- 257 (472)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhCCCcccccC---------------CCCccCCcceEEEEEC---------------
Confidence 578999 9999999999999996443222211 2345555544445553
Q ss_pred CceEEEEEcCCCcc---------chHHH--HHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~---------df~~e--~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+.||||||.. +|... ...+++.+|++|+|+|+.++...|...++..+...++|+|+|+||+|+.
T Consensus 258 -~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 258 -GKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred -CEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 6788999999952 23222 2356789999999999999999999988888888999999999999997
No 120
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.41 E-value=5.5e-12 Score=150.81 Aligned_cols=111 Identities=22% Similarity=0.267 Sum_probs=81.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +||+|+|||||.|+|. |...+ .|+ -.|.|++.....+.+.
T Consensus 3 ~~~IaL---vG~pNvGKSTLfN~Lt---g~~~~--vgn-----------~pGvTve~k~g~~~~~--------------- 48 (772)
T PRK09554 3 KLTIGL---IGNPNSGKTTLFNQLT---GARQR--VGN-----------WAGVTVERKEGQFSTT--------------- 48 (772)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHh---CCCCc--cCC-----------CCCceEeeEEEEEEcC---------------
Confidence 468999 9999999999999993 22111 221 1466776665556553
Q ss_pred CceEEEEEcCCCccchHH--------HHH--Hhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSS--------EVT--AAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~--------e~~--~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.+++|||||+.+|.. |.. ..+ ..+|++++|+|++.... ...++.++.+.++|+++++||+|+.
T Consensus 49 -~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 49 -DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred -ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 78999999999988753 111 122 37899999999998643 3446678888999999999999986
No 121
>PRK15494 era GTPase Era; Provisional
Probab=99.41 E-value=1.9e-12 Score=141.99 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=82.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|++|+|||||+++|+...-.+..+ ..+.|.......+.+
T Consensus 50 ~k~~kV~i---vG~~nvGKSTLin~l~~~k~~ivs~---------------k~~tTr~~~~~~~~~-------------- 97 (339)
T PRK15494 50 QKTVSVCI---IGRPNSGKSTLLNRIIGEKLSIVTP---------------KVQTTRSIITGIITL-------------- 97 (339)
T ss_pred cceeEEEE---EcCCCCCHHHHHHHHhCCceeeccC---------------CCCCccCcEEEEEEe--------------
Confidence 35679999 9999999999999996432222111 112232222222333
Q ss_pred CCCceEEEEEcCCCccch--------HHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df--------~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++..++||||||..+. ...+..+++.+|++|+|||+.++....+..++..+...+.|+++|+||+|+.
T Consensus 98 --~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 98 --KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred --CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 3678999999998542 2234456889999999999998887777777777777788999999999986
No 122
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.41 E-value=8.5e-13 Score=143.85 Aligned_cols=113 Identities=26% Similarity=0.233 Sum_probs=94.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
..|+| +|++|+|||||.|+|+.+.-+|..+. .|.|-+.......|.
T Consensus 4 ~~VAI---VGRPNVGKSTLFNRL~g~r~AIV~D~---------------pGvTRDr~y~~~~~~---------------- 49 (444)
T COG1160 4 PVVAI---VGRPNVGKSTLFNRLTGRRIAIVSDT---------------PGVTRDRIYGDAEWL---------------- 49 (444)
T ss_pred CEEEE---ECCCCCcHHHHHHHHhCCeeeEeecC---------------CCCccCCccceeEEc----------------
Confidence 56888 99999999999999965555544433 356777777778886
Q ss_pred ceEEEEEcCCCccchH---------HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFS---------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~---------~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.|.+|||+|..+.. .++..|+..||.+|+|||+.+|++++.+.+.+.+...++|.|+|+||+|-.
T Consensus 50 ~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 50 GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 7889999999986422 357888999999999999999999999999999998889999999999976
No 123
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=3e-12 Score=122.99 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=95.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
..+|++ +|..|+||||++.++.+....+...+.. .+.... .|..|+.....++.+.
T Consensus 10 ~~KIvv---~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k~--kr~tTva~D~g~~~~~--------------- 65 (187)
T COG2229 10 ETKIVV---IGPVGAGKTTFVRALSDKPLVITEADAS----SVSGKG--KRPTTVAMDFGSIELD--------------- 65 (187)
T ss_pred ceeEEE---EcccccchhhHHHHhhccccceeecccc----cccccc--ccceeEeecccceEEc---------------
Confidence 468888 9999999999999997766543321000 011000 4445665555555543
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcC-CccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~-~~~iv~iNKiD~~ 155 (794)
.++.++|.|||||.+|.....-.++.++|+|++||++.+.....+.+++.....+ +|.+|++||.|+.
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~ 134 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF 134 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC
Confidence 2589999999999999999999999999999999999998887777888877777 8999999999998
No 124
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.39 E-value=3.1e-12 Score=136.27 Aligned_cols=111 Identities=28% Similarity=0.194 Sum_probs=77.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.|++ +|++|+|||||+++|+...-.+.....+ .|.... ...... .+
T Consensus 2 ~V~l---iG~pnvGKSTLln~L~~~~~~~vs~~~~---------------TTr~~i-~~i~~~---------------~~ 47 (270)
T TIGR00436 2 FVAI---LGRPNVGKSTLLNQLHGQKISITSPKAQ---------------TTRNRI-SGIHTT---------------GA 47 (270)
T ss_pred EEEE---ECCCCCCHHHHHHHHhCCcEeecCCCCC---------------cccCcE-EEEEEc---------------CC
Confidence 5788 9999999999999996433222111122 122111 111111 25
Q ss_pred eEEEEEcCCCccch--------HHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df--------~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+.|+||||+.+. ...+..+++.+|++++|+|+..+...+ ..++..+...+.|.++|+||+|+.
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 67999999997542 234567889999999999999876555 556677777889999999999986
No 125
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.38 E-value=1.9e-12 Score=126.95 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=80.6
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|+. |.... +...-++.......+.+. +
T Consensus 3 ~~kv~v---vG~~~~GKTsli~~l~~--~~~~~--------------~~~~t~~~~~~~~~~~~~--------------~ 49 (165)
T cd01864 3 LFKIIL---IGDSNVGKTCVVQRFKS--GTFSE--------------RQGNTIGVDFTMKTLEIE--------------G 49 (165)
T ss_pred eeEEEE---ECCCCCCHHHHHHHHhh--CCCcc--------------cCCCccceEEEEEEEEEC--------------C
Confidence 589999 99999999999999843 21111 000111122222233332 2
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HH---hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~---~~~~~~iv~iNKiD~~ 155 (794)
....++||||||+.+|.......++.+|++++|+|+.+....+....|.. +. ..++|+++|+||+|+.
T Consensus 50 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 50 KRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 34688999999999999988999999999999999998766555444533 22 2467899999999986
No 126
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.37 E-value=2e-12 Score=147.16 Aligned_cols=112 Identities=25% Similarity=0.252 Sum_probs=89.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|++|+|||||+++|+.....+.. + ..|+|.+.....+.|. +
T Consensus 1 ~i~i---vG~~nvGKStL~n~l~~~~~~~v~---------~------~~g~t~d~~~~~~~~~----------------~ 46 (429)
T TIGR03594 1 VVAI---VGRPNVGKSTLFNRLTGKRDAIVS---------D------TPGVTRDRKYGDAEWG----------------G 46 (429)
T ss_pred CEEE---ECCCCCCHHHHHHHHhCCCcceec---------C------CCCcccCceEEEEEEC----------------C
Confidence 3677 999999999999999643322211 1 1356666655666674 7
Q ss_pred eEEEEEcCCCcc--------chHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~--------df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+++|||||+. .+...+..+++.+|++++|+|+.+|.......+++.+.+.++|+++|+||+|..
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCC
Confidence 789999999973 355667888999999999999999999999988898888899999999999986
No 127
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.35 E-value=3.5e-12 Score=123.65 Aligned_cols=105 Identities=23% Similarity=0.238 Sum_probs=76.4
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEEEc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlID 96 (794)
+|+.|+|||||++++...... .+ ...++|+......+.+. +..+++||
T Consensus 2 ~G~~~~GKssl~~~~~~~~~~-----~~-----------~~~~~t~~~~~~~~~~~----------------~~~~~liD 49 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQK-----VG-----------NWPGVTVEKKEGRFKLG----------------GKEIEIVD 49 (158)
T ss_pred CCCCCCCHHHHHHHHhcCccc-----cc-----------CCCCcccccceEEEeeC----------------CeEEEEEE
Confidence 799999999999999422100 11 12467777766666664 67899999
Q ss_pred CCCccchHHH------HHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 97 SPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 97 TPGh~df~~e------~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
|||+.+|... ....+ ..+|++|+|+|+.... +....+.++...++|.++++||+|+.
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCCEEEEEehhhhc
Confidence 9999887642 23344 3899999999998742 33344566677889999999999986
No 128
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.35 E-value=1.2e-11 Score=123.41 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=78.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
...+|++ +|+.|+|||||+++|+..... .. +.+ ..|.|.... .+.+
T Consensus 17 ~~~~i~i---vG~~~~GKStlin~l~~~~~~-~~-------~~~------~~~~t~~~~--~~~~--------------- 62 (179)
T TIGR03598 17 DGPEIAF---AGRSNVGKSSLINALTNRKKL-AR-------TSK------TPGRTQLIN--FFEV--------------- 62 (179)
T ss_pred CCCEEEE---EcCCCCCHHHHHHHHhCCCCc-cc-------ccC------CCCcceEEE--EEEe---------------
Confidence 4578999 999999999999999643211 00 000 112232221 1111
Q ss_pred CCceEEEEEcCCCcc----------chHHHHHHhhh---ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCc
Q 003804 87 GNEYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 87 ~~~~~inlIDTPGh~----------df~~e~~~~l~---~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD 153 (794)
+..+.+|||||+. +|...+...++ .+|++++|+|+..+...++..+++.+...++|.++++||+|
T Consensus 63 --~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 140 (179)
T TIGR03598 63 --NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKAD 140 (179)
T ss_pred --CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 1268999999963 34433444444 46899999999999999998888888888999999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 141 ~~ 142 (179)
T TIGR03598 141 KL 142 (179)
T ss_pred cC
Confidence 86
No 129
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.34 E-value=5.1e-12 Score=151.71 Aligned_cols=114 Identities=23% Similarity=0.225 Sum_probs=87.8
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
..+|++ +|++|+|||||+++|+.....+... ..|.|.+.....+.+.
T Consensus 450 ~~kI~i---vG~~nvGKSSLin~l~~~~~~~v~~---------------~~gtT~d~~~~~~~~~--------------- 496 (712)
T PRK09518 450 LRRVAL---VGRPNVGKSSLLNQLTHEERAVVND---------------LAGTTRDPVDEIVEID--------------- 496 (712)
T ss_pred CcEEEE---ECCCCCCHHHHHHHHhCccccccCC---------------CCCCCcCcceeEEEEC---------------
Confidence 478999 9999999999999997544322221 1345555544445553
Q ss_pred CceEEEEEcCCCcc---------chHHH--HHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~---------df~~e--~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..++||||||+. +|... ...+++.+|++|+|+|+.++.+.|+..+++.+...++|+++|+||+|+.
T Consensus 497 -~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 497 -GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred -CCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 6678899999963 23222 3456789999999999999999999999999888899999999999986
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.33 E-value=2.9e-12 Score=123.01 Aligned_cols=114 Identities=26% Similarity=0.361 Sum_probs=72.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
+++|++ +|+.|+|||||+++|+... ... +..++++.......+.+. +
T Consensus 1 ~~ki~~---~G~~~~GKstl~~~l~~~~-~~~---------------~~~~~~~~~~~~~~~~~~--------------~ 47 (161)
T TIGR00231 1 EIKIVI---VGDPNVGKSTLLNRLLGNK-FIT---------------EYKPGTTRNYVTTVIEED--------------G 47 (161)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHhCCC-CcC---------------cCCCCceeeeeEEEEEEC--------------C
Confidence 368999 9999999999999995332 111 112234443333223332 1
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEE-------EeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVV-------VDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailv-------vda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+.+.+|||||+.+|........+.++.++.+ +|+.++...+...+++.+.. +.|.++++||+|+.
T Consensus 48 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 48 KTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLR 121 (161)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCC
Confidence 237899999999999855444444444444444 44444444455555555433 88999999999997
No 131
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.33 E-value=6.4e-12 Score=121.39 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=78.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|++|+|||||+++|+......... ..+.|.......+.+ .
T Consensus 2 ~~i~l---~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~----------------~ 47 (157)
T cd04164 2 IKVVI---VGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDI----------------G 47 (157)
T ss_pred cEEEE---ECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEe----------------C
Confidence 46888 9999999999999996432211110 123444433333434 2
Q ss_pred ceEEEEEcCCCccchHHH--------HHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e--------~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.++... +...++.+|++++|+|+...........+.. ..+.|.++++||+|+.
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLL 120 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcC
Confidence 678999999999876432 4457789999999999998666655555554 4678999999999987
No 132
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.33 E-value=1.1e-11 Score=121.19 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=79.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|+.|+|||||+++++... .... +..|+.......... .+++
T Consensus 1 ~ki~v---vG~~~vGKTsli~~~~~~~--~~~~----------------~~~~~~~~~~~~~~~------------~~~~ 47 (161)
T cd04124 1 VKIIL---LGDSAVGKSKLVERFLMDG--YEPQ----------------QLSTYALTLYKHNAK------------FEGK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CCCC----------------cCCceeeEEEEEEEE------------ECCE
Confidence 47888 9999999999999996321 1100 001111111111111 1234
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh--cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
...+++|||||+..|.......++.+|++|+|+|+.++...+....| ..+.+ .++|.++++||+|+.
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 67899999999999999999999999999999999987766554444 33333 268999999999985
No 133
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=6.4e-12 Score=143.26 Aligned_cols=113 Identities=25% Similarity=0.222 Sum_probs=87.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+|++ +|++|+|||||+++|+.....+.. + ..|+|.+.......|.
T Consensus 2 ~~I~i---vG~~~vGKStL~n~l~~~~~~~v~---------~------~~~~t~d~~~~~~~~~---------------- 47 (435)
T PRK00093 2 PVVAI---VGRPNVGKSTLFNRLTGKRDAIVA---------D------TPGVTRDRIYGEAEWL---------------- 47 (435)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCCceeeC---------C------CCCCcccceEEEEEEC----------------
Confidence 46888 999999999999999533222111 1 1245555544555564
Q ss_pred ceEEEEEcCCCccc--------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~d--------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.+ +...+..+++.+|++|+|||+.++.......+++.+...++|+++++||+|..
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 68899999999987 33345678899999999999999988888888888888899999999999975
No 134
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.32 E-value=3.9e-12 Score=122.53 Aligned_cols=110 Identities=28% Similarity=0.317 Sum_probs=78.0
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|.+++|||||.++|....-. +.. -.|.|+......+.+.
T Consensus 1 i~ial---vG~PNvGKStLfN~Ltg~~~~----------v~n------~pG~Tv~~~~g~~~~~---------------- 45 (156)
T PF02421_consen 1 IRIAL---VGNPNVGKSTLFNALTGAKQK----------VGN------WPGTTVEKKEGIFKLG---------------- 45 (156)
T ss_dssp -EEEE---EESTTSSHHHHHHHHHTTSEE----------EEE------STTSSSEEEEEEEEET----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHHCCCce----------ecC------CCCCCeeeeeEEEEec----------------
Confidence 57899 999999999999999432211 111 1467887777677764
Q ss_pred ceEEEEEcCCCccchH----HH--HHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFS----SE--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~----~e--~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+.|+||||..++. .| +...+ ...|++|+|+||.. ..+...+..++.+.++|+++++||+|..
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 7899999999954432 11 22333 47899999999986 3455667788889999999999999986
No 135
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.32 E-value=1.1e-11 Score=120.96 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=77.8
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhccccccC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+++|++ +|..|+|||||+++++.... .....+ |+... ...+.+ +
T Consensus 2 ~~ki~i---~G~~~~GKtsl~~~~~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~ 46 (164)
T cd04145 2 TYKLVV---VGGGGVGKSALTIQFIQSYF--VTDYDP----------------TIEDSYTKQCEI--------------D 46 (164)
T ss_pred ceEEEE---ECCCCCcHHHHHHHHHhCCC--CcccCC----------------CccceEEEEEEE--------------C
Confidence 579999 99999999999999975321 110011 11100 111122 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH----hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+....+++|||||+.+|.......++.+|++++|+|+.+....+...-| ..+. ..++|+++++||+|+.
T Consensus 47 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 47 GQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred CEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 2356899999999999999999999999999999999976543333222 2222 2467999999999986
No 136
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=7.6e-12 Score=143.58 Aligned_cols=113 Identities=22% Similarity=0.307 Sum_probs=87.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+|+| +|++|+|||||+++|+.....+... ..|+|.+.....+.|.
T Consensus 39 ~~V~I---vG~~nvGKSSL~nrl~~~~~~~v~~---------------~~gvT~d~~~~~~~~~---------------- 84 (472)
T PRK03003 39 PVVAV---VGRPNVGKSTLVNRILGRREAVVED---------------VPGVTRDRVSYDAEWN---------------- 84 (472)
T ss_pred CEEEE---EcCCCCCHHHHHHHHhCcCcccccC---------------CCCCCEeeEEEEEEEC----------------
Confidence 57899 9999999999999996432222111 2345554444444453
Q ss_pred ceEEEEEcCCCccc--------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~d--------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..++||||||+.. |...+..+++.+|++|+|+|+..+.......++..+...++|+++|+||+|+.
T Consensus 85 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 85 GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 67899999999762 44556778999999999999999988777778888888899999999999986
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.31 E-value=1.6e-11 Score=120.77 Aligned_cols=112 Identities=21% Similarity=0.149 Sum_probs=71.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|+.|+|||||+++|......+.. ..+.|.......+.+. ..
T Consensus 2 ~v~i---vG~~~~GKStl~~~l~~~~~~v~~----------------~~~~t~~~~~~~~~~~---------------~~ 47 (170)
T cd01898 2 DVGL---VGLPNAGKSTLLSAISNAKPKIAD----------------YPFTTLVPNLGVVRVD---------------DG 47 (170)
T ss_pred CeEE---ECCCCCCHHHHHHHHhcCCccccC----------------CCccccCCcceEEEcC---------------CC
Confidence 5788 999999999999999532211110 0122333332333332 12
Q ss_pred eEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCCC-cchhHHHHHH-HHHh-----cCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG-VCVQTETVLR-QALG-----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~g-v~~qt~~~~~-~~~~-----~~~~~iv~iNKiD~~ 155 (794)
..++|+||||+.+ +.....+.++.+|++++|+|+.++ -..+....|. .+.. .+.|.++++||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 3899999999742 334455667789999999999987 3334433332 2222 367899999999986
No 138
>PRK00089 era GTPase Era; Reviewed
Probab=99.31 E-value=3e-11 Score=130.30 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=80.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++-.|++ +|++|+|||||+++|+...-.+.....+ .|... ...+ +.
T Consensus 4 ~~g~V~i---iG~pn~GKSTLin~L~g~~~~~vs~~~~---------------tt~~~-i~~i-~~-------------- 49 (292)
T PRK00089 4 KSGFVAI---VGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRHR-IRGI-VT-------------- 49 (292)
T ss_pred eeEEEEE---ECCCCCCHHHHHHHHhCCceeecCCCCC---------------ccccc-EEEE-EE--------------
Confidence 5667888 9999999999999996432222111011 11110 0011 11
Q ss_pred CCceEEEEEcCCCccch--------HHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df--------~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+..+.+|||||..+. ...+..++..+|++++|+|+..+.......++..+...++|.++++||+|+.
T Consensus 50 ~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 50 EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 12578999999997553 3456678889999999999999777777777777777788999999999986
No 139
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.30 E-value=9.8e-12 Score=121.29 Aligned_cols=114 Identities=23% Similarity=0.176 Sum_probs=79.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|+.++|||||+++|+...-.... . .|+.....+..+. .++.
T Consensus 1 ~ki~v---~G~~~vGKTsli~~l~~~~~~~~~----------------~--~~~~~~~~~~~~~------------~~~~ 47 (161)
T cd04113 1 FKFII---IGSSGTGKSCLLHRFVENKFKEDS----------------Q--HTIGVEFGSKIIR------------VGGK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCCCCC----------------C--CceeeeEEEEEEE------------ECCE
Confidence 47888 999999999999999632211100 0 1111111111221 1223
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-H---HhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~---~~~~~~~iv~iNKiD~~ 155 (794)
...+++||||||.+|.......++.+|++|+|+|+.++.+.+....|.. + ...++|.++++||+|+.
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 5789999999999999888999999999999999998876665544522 2 23578899999999986
No 140
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.30 E-value=1.3e-11 Score=122.00 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=80.0
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++++. +.... +....++.......+.+ .+
T Consensus 2 ~~ki~v---vG~~~vGKTsli~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~--------------~~ 48 (170)
T cd04115 2 IFKIIV---IGDSNVGKTCLTYRFCA--GRFPE--------------RTEATIGVDFRERTVEI--------------DG 48 (170)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHh--CCCCC--------------ccccceeEEEEEEEEEE--------------CC
Confidence 578999 99999999999999952 11110 00111111111222222 23
Q ss_pred CceEEEEEcCCCccchHH-HHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HHh----cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~-e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~~----~~~~~iv~iNKiD~~ 155 (794)
..+.+++|||||+.+|.. .....++.+|++++|+|+.+....+....|.. +.. .++|+++++||+|+.
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 457899999999999874 46677889999999999998877777666653 332 357999999999986
No 141
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.30 E-value=2.9e-11 Score=123.16 Aligned_cols=130 Identities=18% Similarity=0.283 Sum_probs=82.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|+.|+|||||+.+|.... . .+. + .++......+... ...++
T Consensus 2 ~vll---~G~~~sGKTsL~~~l~~~~--~----~~t--~-----------~s~~~~~~~~~~~------------~~~~~ 47 (203)
T cd04105 2 TVLL---LGPSDSGKTALFTKLTTGK--Y----RST--V-----------TSIEPNVATFILN------------SEGKG 47 (203)
T ss_pred eEEE---EcCCCCCHHHHHHHHhcCC--C----CCc--c-----------CcEeecceEEEee------------cCCCC
Confidence 4677 9999999999999995321 1 010 0 0111111111111 01236
Q ss_pred eEEEEEcCCCccchHHHHHHhhhcc-CceEEEEeCCCCcc--hhHHHHHHHH----H--hcCCccEEEEecCccchhccC
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRIT-DGALVVVDCIEGVC--VQTETVLRQA----L--GERIRPVLTVNKMDRCFLELQ 160 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~-D~ailvvda~~gv~--~qt~~~~~~~----~--~~~~~~iv~iNKiD~~~~~~~ 160 (794)
..+.+||||||.+|.......++.+ +++|+|||+..... ..+...|..+ . ..++|+++++||+|+. .
T Consensus 48 ~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~----~ 123 (203)
T cd04105 48 KKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF----T 123 (203)
T ss_pred ceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc----c
Confidence 7899999999999999999999998 99999999998631 1222222221 1 2478999999999987 5
Q ss_pred C-CHHHHHHHHHHHHHHh
Q 003804 161 V-DGEEAYQTFQKVIENA 177 (794)
Q Consensus 161 ~-~~~~~~~~~~~~~~~~ 177 (794)
+ ..+.+.+.+++-+..+
T Consensus 124 a~~~~~i~~~le~ei~~~ 141 (203)
T cd04105 124 AKPAKKIKEQLEKELNTL 141 (203)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 4 3444555555544443
No 142
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=1.8e-11 Score=120.33 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=80.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce--EEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~ 84 (794)
..++|++ +|+.|+|||||+++|.. +.... ..+.|+.... ..+.+.
T Consensus 6 ~~~~v~v---~G~~~~GKSsli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~------------ 52 (169)
T cd04114 6 FLFKIVL---IGNAGVGKTCLVRRFTQ--GLFPP----------------GQGATIGVDFMIKTVEIK------------ 52 (169)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHh--CCCCC----------------CCCCceeeEEEEEEEEEC------------
Confidence 3478999 99999999999999942 21111 1123332222 223332
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH----HHHhcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~----~~~~~~~~~iv~iNKiD~~ 155 (794)
+....+.++||||+.+|.......++.+|++++|+|+.++...+....|. .....++|.++++||+|+.
T Consensus 53 --~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 53 --GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred --CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 23467889999999999999999999999999999998876554444443 2223468889999999986
No 143
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.29 E-value=1.6e-11 Score=119.46 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=77.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|+.|+|||||+++++... .. +...|+......+.+. .
T Consensus 1 ki~i---iG~~~~GKssli~~~~~~~--~~-----------------~~~~t~~~~~~~~~~~----------------~ 42 (158)
T cd00878 1 RILI---LGLDGAGKTTILYKLKLGE--VV-----------------TTIPTIGFNVETVEYK----------------N 42 (158)
T ss_pred CEEE---EcCCCCCHHHHHHHHhcCC--CC-----------------CCCCCcCcceEEEEEC----------------C
Confidence 4777 9999999999999995332 10 0112333333344443 6
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcch-hHHHHHHHHH----hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~-qt~~~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
..+++|||||+..|.......++.+|++++|+|+...-.. .....+..+. ..+.|+++++||+|+.
T Consensus 43 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 43 VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred EEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 7899999999999988888888999999999999976322 2233333332 3578999999999987
No 144
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.28 E-value=2e-11 Score=120.87 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=77.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.++|||||+++|... ... . ...|+......+.+
T Consensus 13 ~~~kv~i---vG~~~~GKTsL~~~l~~~--~~~----------~-------~~~t~g~~~~~~~~--------------- 55 (173)
T cd04154 13 REMRILI---LGLDNAGKTTILKKLLGE--DID----------T-------ISPTLGFQIKTLEY--------------- 55 (173)
T ss_pred CccEEEE---ECCCCCCHHHHHHHHccC--CCC----------C-------cCCccccceEEEEE---------------
Confidence 4578999 999999999999999432 000 0 01122222222333
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHHH----HhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA----LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~~----~~~~~~~iv~iNKiD~~ 155 (794)
+++.+++|||||+..|.......++.+|++++|+|+.+.-..+. ...+..+ ...+.|+++++||+|+.
T Consensus 56 -~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 56 -EGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred -CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 26789999999999998888889999999999999987633222 1122222 22577999999999987
No 145
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.28 E-value=2.4e-11 Score=119.81 Aligned_cols=107 Identities=24% Similarity=0.263 Sum_probs=76.9
Q ss_pred EEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCce
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (794)
|++ +|..++|||||+++|... .. + +...|+......+.+ +++
T Consensus 2 i~~---~G~~~~GKTsl~~~l~~~--~~-----~------------~~~~t~g~~~~~~~~----------------~~~ 43 (167)
T cd04161 2 LLT---VGLDNAGKTTLVSALQGE--IP-----K------------KVAPTVGFTPTKLRL----------------DKY 43 (167)
T ss_pred EEE---ECCCCCCHHHHHHHHhCC--CC-----c------------cccCcccceEEEEEE----------------CCE
Confidence 567 999999999999998421 10 0 112344333334444 378
Q ss_pred EEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh-HHHHHHHHHh----cCCccEEEEecCccc
Q 003804 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 91 ~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q-t~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
.++++||||+..|.......++.+|++|+|+|+.+.-..+ ....+..+.. .++|+++|+||+|+.
T Consensus 44 ~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 44 EVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred EEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 9999999999999988899999999999999998754333 2333343332 367999999999997
No 146
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.28 E-value=2.4e-11 Score=118.35 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=75.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|+.++|||||+++|.. +... +. ..|+......+.+ .+
T Consensus 1 kv~l---vG~~~~GKTsl~~~l~~--~~~~----------~~-------~~t~~~~~~~~~~----------------~~ 42 (158)
T cd04151 1 RILI---LGLDNAGKTTILYRLQL--GEVV----------TT-------IPTIGFNVETVTY----------------KN 42 (158)
T ss_pred CEEE---ECCCCCCHHHHHHHHcc--CCCc----------Cc-------CCccCcCeEEEEE----------------CC
Confidence 4778 99999999999999932 1110 00 0132222223334 26
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh-HHHHHHHH-H---hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQA-L---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q-t~~~~~~~-~---~~~~~~iv~iNKiD~~ 155 (794)
..+++|||||+.+|.......++.+|++|+|+|+.+....+ ....|... . ..++|+++++||+|+.
T Consensus 43 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 43 LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 88999999999999888888999999999999998753322 12223222 2 1368999999999987
No 147
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.28 E-value=1.4e-11 Score=120.14 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=78.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce--EEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~ 86 (794)
++|++ +|..++|||||+++|.... ... + ...|+.... ..+.+. ..
T Consensus 1 ~kv~~---vG~~~~GKTsl~~~~~~~~--~~~---------~-------~~~t~~~~~~~~~~~~~------------~~ 47 (162)
T cd04106 1 IKVIV---VGNGNVGKSSMIQRFVKGI--FTK---------D-------YKKTIGVDFLEKQIFLR------------QS 47 (162)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCC--CCC---------C-------CCCcEEEEEEEEEEEEc------------CC
Confidence 47888 9999999999999995311 100 0 001221111 112221 11
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....++||||||+.+|.......++.+|++++|+|+.+....+....|..... .++|+++++||+|+.
T Consensus 48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 346789999999999999988999999999999999987665555444543322 478999999999986
No 148
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.27 E-value=2e-11 Score=120.34 Aligned_cols=115 Identities=20% Similarity=0.152 Sum_probs=78.9
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
+++|++ +|+.|+|||||+++++...-.... .. ..|.+. ....+.+ ++
T Consensus 4 ~~ki~v---vG~~~vGKSsLl~~l~~~~~~~~~--~~------------t~~~~~--~~~~~~~--------------~~ 50 (168)
T cd01866 4 LFKYII---IGDTGVGKSCLLLQFTDKRFQPVH--DL------------TIGVEF--GARMITI--------------DG 50 (168)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceeE--EEEEEEE--------------CC
Confidence 489999 999999999999999532111100 00 001111 1112222 12
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HHh---cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~~---~~~~~iv~iNKiD~~ 155 (794)
....+++|||||+.+|.......++.+|++|+|+|+......+....|-. +.. .+.|.+++.||+|+.
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 51 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 35689999999999998888899999999999999997655555444432 222 367899999999986
No 149
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.27 E-value=3.2e-11 Score=119.68 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=79.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.++|||||+.+|.. |.... ...|+......+.+.
T Consensus 14 ~~~kv~~---~G~~~~GKTsl~~~l~~--~~~~~-----------------~~~t~~~~~~~~~~~-------------- 57 (174)
T cd04153 14 KEYKVII---VGLDNAGKTTILYQFLL--GEVVH-----------------TSPTIGSNVEEIVYK-------------- 57 (174)
T ss_pred CccEEEE---ECCCCCCHHHHHHHHcc--CCCCC-----------------cCCccccceEEEEEC--------------
Confidence 4678999 99999999999999942 11100 112333333344443
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HH-HHHHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ET-VLRQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~-~~~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+..+.++||||+..|.......++.+|++|+|+|+++...... .. +.+.+.. .++|+++++||+|+.
T Consensus 58 --~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 58 --NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred --CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 6889999999999998888899999999999999987643221 22 2222222 357899999999987
No 150
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.27 E-value=2.3e-11 Score=118.78 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=70.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|++|+|||||+++| .|.... + .......|. .
T Consensus 3 ~i~~---iG~~~~GKstl~~~l-----------~~~~~~------------~--~~~~~v~~~----------------~ 38 (158)
T PRK15467 3 RIAF---VGAVGAGKTTLFNAL-----------QGNYTL------------A--RKTQAVEFN----------------D 38 (158)
T ss_pred EEEE---ECCCCCCHHHHHHHH-----------cCCCcc------------C--ccceEEEEC----------------C
Confidence 5888 999999999999998 332100 0 112233443 1
Q ss_pred eEEEEEcCCCc----cchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGH----VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh----~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
. ++|||||. .++..++..+++.+|++++|+|+.++....+..++.. ..+.|.++++||+|+.
T Consensus 39 ~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 39 K--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMP 104 (158)
T ss_pred C--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccC
Confidence 1 37999995 5677788888999999999999998876555444332 3467889999999987
No 151
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.27 E-value=1.6e-11 Score=119.73 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=79.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|+.|+|||||+++|+...- .. ...+.++.......+.+. +.
T Consensus 1 ~kv~v---~G~~~~GKTtli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------~~ 47 (164)
T smart00175 1 FKIIL---IGDSGVGKSSLLSRFTDGKF--SE--------------QYKSTIGVDFKTKTIEVD--------------GK 47 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCC--CC--------------CCCCceeeEEEEEEEEEC--------------CE
Confidence 47888 99999999999999953211 10 000111222222223332 23
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HHh---cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~~---~~~~~iv~iNKiD~~ 155 (794)
...+++|||||+..|.......++.+|++|+|+|+.+....+....|.. +.. .++|+++++||+|+.
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 4689999999999999999999999999999999998766655444532 222 468999999999986
No 152
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.27 E-value=3.3e-11 Score=117.38 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=75.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|..++|||||+.+|....-... ....|+......+.+ ++
T Consensus 1 ~i~~---vG~~~~GKTsl~~~l~~~~~~~~-----------------~~~~t~g~~~~~~~~----------------~~ 44 (162)
T cd04157 1 NILV---VGLDNSGKTTIINQLKPENAQSQ-----------------IIVPTVGFNVESFEK----------------GN 44 (162)
T ss_pred CEEE---ECCCCCCHHHHHHHHcccCCCcc-----------------eecCccccceEEEEE----------------CC
Confidence 4677 99999999999999943210000 001122222222333 37
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHHHH------hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL------GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~~~------~~~~~~iv~iNKiD~~ 155 (794)
..+++|||||+.+|.......++.+|++|+|+|+.+...... ...+..+. ..++|.++++||+|+.
T Consensus 45 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 45 LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred EEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 889999999999999988999999999999999997654322 11122221 2478999999999987
No 153
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.26 E-value=4e-11 Score=120.07 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=77.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||++++++.... .. -.|+........... .+
T Consensus 2 ~~~kv~~---vG~~~~GKTsli~~~~~~~~~-~~------------------~~t~~~~~~~~~~~~-----------~~ 48 (183)
T cd04152 2 QSLHIVM---LGLDSAGKTTVLYRLKFNEFV-NT------------------VPTKGFNTEKIKVSL-----------GN 48 (183)
T ss_pred CceEEEE---ECCCCCCHHHHHHHHhcCCcC-Cc------------------CCccccceeEEEeec-----------cC
Confidence 4578999 999999999999999542211 00 011111111111110 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-----HHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-----~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+..+++|||||+..|.......++.+|++|+|+|+.+....+... ++......++|+++++||+|+.
T Consensus 49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 24678999999999999887888899999999999998764332222 2222234578999999999986
No 154
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.26 E-value=2.2e-11 Score=122.43 Aligned_cols=112 Identities=21% Similarity=0.162 Sum_probs=78.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+..+|++ +|+.|+|||||+++|.. +.... ...|+......+.+.
T Consensus 17 ~~~~ki~i---lG~~~~GKStLi~~l~~--~~~~~-----------------~~~T~~~~~~~i~~~------------- 61 (190)
T cd00879 17 NKEAKILF---LGLDNAGKTTLLHMLKD--DRLAQ-----------------HVPTLHPTSEELTIG------------- 61 (190)
T ss_pred cCCCEEEE---ECCCCCCHHHHHHHHhc--CCCcc-----------------cCCccCcceEEEEEC-------------
Confidence 45678899 99999999999999942 11100 112333333444453
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh-HHHHHHHHH----hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q-t~~~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+..+.++||||+.+|.......++.+|++++|+|+.+.-..+ ....+..+. ..+.|+++++||+|+.
T Consensus 62 ---~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 62 ---NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 678999999999999888888899999999999998653222 122222222 2468999999999986
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.25 E-value=2.8e-11 Score=136.82 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=83.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++|+|||||+++|+.....+..... |.|.+.....+.++
T Consensus 202 ~g~kVvI---vG~~nvGKSSLiN~L~~~~~aivs~~p---------------gtTrd~~~~~i~~~-------------- 249 (442)
T TIGR00450 202 DGFKLAI---VGSPNVGKSSLLNALLKQDRAIVSDIK---------------GTTRDVVEGDFELN-------------- 249 (442)
T ss_pred cCCEEEE---ECCCCCcHHHHHHHHhCCCCcccCCCC---------------CcEEEEEEEEEEEC--------------
Confidence 3578999 999999999999999754443332222 33444433444453
Q ss_pred CCceEEEEEcCCCccchHHH--------HHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e--------~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.+++|||||..++... ....++.+|++|+|+|+..+...+.. .+..+...++|+++|+||+|+.
T Consensus 250 --g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 250 --GILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred --CEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCC
Confidence 788999999998665432 34577899999999999988766554 5566655688999999999987
No 156
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.25 E-value=3.3e-11 Score=118.67 Aligned_cols=112 Identities=20% Similarity=0.177 Sum_probs=76.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce--EEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~ 86 (794)
++|++ +|+.|+|||||+++|+...- .. . ...|+.... ..+.+ .
T Consensus 1 ~ki~v---iG~~~~GKSsl~~~l~~~~~--~~---~-------------~~~t~~~~~~~~~~~~--------------~ 45 (172)
T cd01862 1 LKVII---LGDSGVGKTSLMNQYVNKKF--SN---Q-------------YKATIGADFLTKEVTV--------------D 45 (172)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCC--Cc---C-------------cCCccceEEEEEEEEE--------------C
Confidence 47888 99999999999999954211 00 0 001111111 11222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHH--H------hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA--L------GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~--~------~~~~~~iv~iNKiD~~ 155 (794)
+....+++|||||+.+|.......++.+|++|+|+|+.+....+...-|... . ..++|.++++||+|+.
T Consensus 46 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 46 DKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred CEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 2356788999999999998888999999999999999876554443334321 1 1267999999999996
No 157
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.25 E-value=9.4e-11 Score=113.92 Aligned_cols=114 Identities=25% Similarity=0.246 Sum_probs=77.8
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
..+|++ +|..|+|||||+++|+...-.... +. ...+....... + ..
T Consensus 3 ~~~i~~---~G~~g~GKttl~~~l~~~~~~~~~---------~~------~~~~~~~~~~~--~--------------~~ 48 (168)
T cd04163 3 SGFVAI---VGRPNVGKSTLLNALVGQKISIVS---------PK------PQTTRNRIRGI--Y--------------TD 48 (168)
T ss_pred eeEEEE---ECCCCCCHHHHHHHHhCCceEecc---------CC------CCceeceEEEE--E--------------Ec
Confidence 467888 999999999999999632211100 00 00111111111 1 11
Q ss_pred CceEEEEEcCCCccchH--------HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~--------~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+..+.+|||||+.+.. ......++.+|++++|+|+.+........+++.+...+.|.++++||+|+.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 35789999999986532 344566889999999999998866666667777777789999999999986
No 158
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.24 E-value=4.4e-11 Score=119.85 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=77.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|..|+|||||+++|... .... . ..|.......+.+
T Consensus 16 ~~~~i~i---vG~~~~GKTsli~~l~~~--~~~~----------~-------~~t~~~~~~~~~~--------------- 58 (184)
T smart00178 16 KHAKILF---LGLDNAGKTTLLHMLKND--RLAQ----------H-------QPTQHPTSEELAI--------------- 58 (184)
T ss_pred ccCEEEE---ECCCCCCHHHHHHHHhcC--CCcc----------c-------CCccccceEEEEE---------------
Confidence 4588999 999999999999999421 1100 0 0122222233334
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh-HHHHHHHHH----hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q-t~~~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
++..++++||||+..+.......++.+|++|+|+|+.+....+ ....+..+. ..++|+++++||+|+.
T Consensus 59 -~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 59 -GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred -CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 2688999999999998888888999999999999998753322 222333332 2578999999999986
No 159
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.23 E-value=1.4e-10 Score=114.07 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=76.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|+.|+|||||+++|++.. ....... +.........+ ...
T Consensus 1 ~kv~i---vG~~~vGKTsl~~~l~~~~--~~~~~~~----------------~~~~~~~~~~~--------------~~~ 45 (166)
T cd01893 1 VRIVL---IGDEGVGKSSLIMSLVSEE--FPENVPR----------------VLPEITIPADV--------------TPE 45 (166)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCc--CCccCCC----------------cccceEeeeee--------------cCC
Confidence 37888 9999999999999996421 1110000 00000111111 224
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHH-HHHH--hcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~-~~~~--~~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.++...+...++.+|++++|+|+......+.. ..| ..+. ..++|+++++||+|+.
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~ 116 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR 116 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 67899999999998888888888999999999999987666553 234 2332 2467999999999996
No 160
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.23 E-value=3.7e-11 Score=144.36 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=88.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+|+| +|++++|||||+++|+.....+... ..|+|.+.......|.
T Consensus 276 ~~V~I---vG~~nvGKSSL~n~l~~~~~~iv~~---------------~pGvT~d~~~~~~~~~---------------- 321 (712)
T PRK09518 276 GVVAI---VGRPNVGKSTLVNRILGRREAVVED---------------TPGVTRDRVSYDAEWA---------------- 321 (712)
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCCCceeecC---------------CCCeeEEEEEEEEEEC----------------
Confidence 57888 9999999999999996433222221 1244544444444453
Q ss_pred ceEEEEEcCCCccc--------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~d--------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||... |...+..+++.+|++|+|+|+.+|.......+++.+...++|+|+|+||+|+.
T Consensus 322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 67899999999753 55667788999999999999999998888888888888999999999999986
No 161
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.22 E-value=6.1e-11 Score=116.53 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=75.9
Q ss_pred EEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCce
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (794)
|++ +|..|+|||||+.++....- . .+ ...|+......+.+ ++.
T Consensus 2 i~i---vG~~~vGKTsli~~~~~~~~-~----------~~-------~~pt~g~~~~~i~~----------------~~~ 44 (164)
T cd04162 2 ILV---LGLDGAGKTSLLHSLSSERS-L----------ES-------VVPTTGFNSVAIPT----------------QDA 44 (164)
T ss_pred EEE---ECCCCCCHHHHHHHHhcCCC-c----------cc-------ccccCCcceEEEee----------------CCe
Confidence 566 99999999999999953210 0 00 11222222233333 378
Q ss_pred EEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHH--hcCCccEEEEecCccc
Q 003804 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 91 ~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~--~~~~~~iv~iNKiD~~ 155 (794)
.+.+|||||+.+|.......++.+|++|+|+|+.+....... ..+..+. ..++|+++|+||+|+.
T Consensus 45 ~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 45 IMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 999999999999998889999999999999999875433322 2233332 2578999999999986
No 162
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.22 E-value=1.5e-10 Score=113.79 Aligned_cols=115 Identities=19% Similarity=0.122 Sum_probs=78.6
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.++|||||++++.. +..... ...|+.......... .++
T Consensus 2 ~~ki~i---iG~~~vGKTsli~~~~~--~~~~~~----------------~~~t~~~~~~~~~~~------------~~~ 48 (166)
T cd04122 2 IFKYII---IGDMGVGKSCLLHQFTE--KKFMAD----------------CPHTIGVEFGTRIIE------------VNG 48 (166)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhc--CCCCCC----------------CCcccceeEEEEEEE------------ECC
Confidence 378999 99999999999999952 211110 001221111111111 122
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HH---hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~---~~~~~~iv~iNKiD~~ 155 (794)
..+.+.+|||||+..|.......++.+|++|+|+|..+....+....|.. +. ..+.|++++.||+|+.
T Consensus 49 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 45789999999999999988999999999999999998665555444432 22 2356888999999986
No 163
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.22 E-value=4.3e-11 Score=116.61 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=79.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|+.++|||||+++|+...-... ....++.+.....+.++ +..
T Consensus 2 ki~l---iG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~~ 48 (161)
T cd01861 2 KLVF---LGDQSVGKTSIITRFMYDTFDNQ----------------YQATIGIDFLSKTMYLE--------------DKT 48 (161)
T ss_pred EEEE---ECCCCCCHHHHHHHHHcCCCCcc----------------CCCceeeeEEEEEEEEC--------------CEE
Confidence 6888 99999999999999953221111 11123333333333332 234
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HH-hc--CCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL-GE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~-~~--~~~~iv~iNKiD~~ 155 (794)
..+++|||||+..|.......++.+|++++|+|+.+..+.+....|.. +. .. +.|.++++||+|+.
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 679999999999999888899999999999999998766555444432 22 23 37899999999985
No 164
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.22 E-value=7.1e-11 Score=108.92 Aligned_cols=107 Identities=23% Similarity=0.270 Sum_probs=74.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|.+|+|||||+++|+....... + + ..+.|.......+.+ ++
T Consensus 1 ~V~i---iG~~~~GKSTlin~l~~~~~~~~----~-----~------~~~~T~~~~~~~~~~----------------~~ 46 (116)
T PF01926_consen 1 RVAI---IGRPNVGKSTLINALTGKKLAKV----S-----N------IPGTTRDPVYGQFEY----------------NN 46 (116)
T ss_dssp EEEE---EESTTSSHHHHHHHHHTSTSSEE----S-----S------STTSSSSEEEEEEEE----------------TT
T ss_pred CEEE---ECCCCCCHHHHHHHHhccccccc----c-----c------cccceeeeeeeeeee----------------ce
Confidence 4778 99999999999999973221111 1 1 123344443223334 36
Q ss_pred eEEEEEcCCCccc---------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEec
Q 003804 90 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 151 (794)
Q Consensus 90 ~~inlIDTPGh~d---------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNK 151 (794)
..+.|+||||..+ ....+...++.+|++++|||+.+....+...+++++. .+.|.++|+||
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 7788999999754 2334666778999999999988855555667777775 88899999998
No 165
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.22 E-value=9.2e-11 Score=121.36 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=81.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
....|++ +|++|+|||||++.|+....... .. ...|. +++ +.
T Consensus 38 ~~~~i~i---vG~~~~GKstl~~~l~~~~~~~~--------~~------~~~g~------i~i-~~-------------- 79 (225)
T cd01882 38 PPLVVAV---VGPPGVGKTTLIKSLVKNYTKQN--------IS------DIKGP------ITV-VT-------------- 79 (225)
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHHhhcccCc--------cc------ccccc------EEE-Ee--------------
Confidence 3467888 99999999999999965422100 00 01121 111 11
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEE-EEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv-~iNKiD~~ 155 (794)
.++.+++++||||+. ..+..+++.+|.+++|+|+.+|...++..+|..+...++|.++ |+||+|+.
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 136789999999975 6677888999999999999999999999999999888999665 99999986
No 166
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.22 E-value=5.9e-11 Score=116.79 Aligned_cols=115 Identities=19% Similarity=0.178 Sum_probs=78.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
+++|++ +|..++|||||++++.... .... ....++.......+.+. +
T Consensus 3 ~~ki~v---vG~~~~GKSsl~~~~~~~~--f~~~--------------~~~t~~~~~~~~~~~~~--------------~ 49 (167)
T cd01867 3 LFKLLL---IGDSGVGKSCLLLRFSEDS--FNPS--------------FISTIGIDFKIRTIELD--------------G 49 (167)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhhCc--CCcc--------------cccCccceEEEEEEEEC--------------C
Confidence 589999 9999999999999995321 1110 00001111111222332 2
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HH---hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~---~~~~~~iv~iNKiD~~ 155 (794)
....+.+|||||+.+|.......++.+|++|+|+|+.++.+.+...-|.. +. ..+.|.+++.||+|+.
T Consensus 50 ~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 50 KKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 35789999999999999888889999999999999988665544333432 22 2467889999999987
No 167
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.22 E-value=3.9e-11 Score=118.09 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=79.4
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..|+|||||+++++... ... +...|+........+. .+.+
T Consensus 1 ~ki~v---vG~~~vGKTsli~~~~~~~--~~~----------------~~~~t~~~~~~~~~~~------------~~~~ 47 (166)
T cd00877 1 FKLVL---VGDGGTGKTTFVKRHLTGE--FEK----------------KYVATLGVEVHPLDFH------------TNRG 47 (166)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CCC----------------CCCCceeeEEEEEEEE------------ECCE
Confidence 47888 9999999999999996321 110 0112332222222222 1234
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh--cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
...+.+|||||+.+|.......++.+|++|+|+|..++...+....| ..+.. .++|+++++||+|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 67899999999999887777888999999999999987666554444 33322 268999999999986
No 168
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.21 E-value=7.9e-11 Score=115.17 Aligned_cols=112 Identities=24% Similarity=0.303 Sum_probs=75.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|+.|+|||||+++++... ... ++.+ |+... ...+.+ ++
T Consensus 1 ~ki~v---~G~~~~GKTsli~~~~~~~--~~~---------~~~~-------t~~~~~~~~~~~--------------~~ 45 (164)
T smart00173 1 YKLVV---LGSGGVGKSALTIQFVQGH--FVD---------DYDP-------TIEDSYRKQIEI--------------DG 45 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCc--CCc---------ccCC-------chhhhEEEEEEE--------------CC
Confidence 37888 9999999999999996422 111 0000 11111 111112 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HH----HhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA----LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~----~~~~~~~iv~iNKiD~~ 155 (794)
....+.+|||||+.+|.......++.+|++++|+|+.+....+...-|. .+ ...+.|+++++||+|+.
T Consensus 46 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 46 EVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3578999999999999988889999999999999998754433332222 22 22367889999999986
No 169
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.21 E-value=1.4e-10 Score=112.79 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=77.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..|+|||||+++|+...-.... . .|+........+. ..+.
T Consensus 1 ~ki~i---~G~~~~GKStli~~l~~~~~~~~~--~----------------~~~~~~~~~~~~~------------~~~~ 47 (162)
T cd04123 1 FKVVL---LGEGRVGKTSLVLRYVENKFNEKH--E----------------STTQASFFQKTVN------------IGGK 47 (162)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCCCCc--C----------------CccceeEEEEEEE------------ECCE
Confidence 47888 999999999999999643211100 0 0111111111111 1123
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHH----HhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~----~~~~~~~iv~iNKiD~~ 155 (794)
...+++|||||+..|.......++.+|++++|+|+.++...+....|... ...++|.++++||+|+.
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 56899999999998888888888999999999999987655544444222 22367899999999986
No 170
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.21 E-value=7.9e-11 Score=113.59 Aligned_cols=108 Identities=21% Similarity=0.174 Sum_probs=75.1
Q ss_pred EEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCce
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (794)
|++ +|+.|+|||||+++|.... ...++ -.|+......+.+. +.
T Consensus 2 i~i---~G~~~~GKssl~~~l~~~~-----------~~~~~-------~~t~~~~~~~~~~~----------------~~ 44 (159)
T cd04159 2 ITL---VGLQNSGKTTLVNVIAGGQ-----------FSEDT-------IPTVGFNMRKVTKG----------------NV 44 (159)
T ss_pred EEE---EcCCCCCHHHHHHHHccCC-----------CCcCc-------cCCCCcceEEEEEC----------------CE
Confidence 567 9999999999999993211 11111 01222222333332 57
Q ss_pred EEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcch-hHHHHHHHHHh----cCCccEEEEecCccc
Q 003804 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 91 ~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~-qt~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
.+.+|||||+..|.......++.+|++++|+|+.+.... +....+..+.. .++|+++++||+|..
T Consensus 45 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 45 TLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 899999999999999999999999999999999864332 22233333332 467999999999986
No 171
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.21 E-value=4.5e-11 Score=135.84 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=82.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++|+|||||+++|+.....+... ..|.|.+.....+.+.
T Consensus 214 ~~~kV~i---vG~~nvGKSSLln~L~~~~~a~v~~---------------~~gtT~d~~~~~i~~~-------------- 261 (449)
T PRK05291 214 EGLKVVI---AGRPNVGKSSLLNALLGEERAIVTD---------------IAGTTRDVIEEHINLD-------------- 261 (449)
T ss_pred cCCEEEE---ECCCCCCHHHHHHHHhCCCCcccCC---------------CCCcccccEEEEEEEC--------------
Confidence 3478999 9999999999999996433222221 1234544444445553
Q ss_pred CCceEEEEEcCCCccchHHH--------HHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e--------~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.+++|||||+.++... +...++.+|++++|+|+.++...+....|.. ..+.|.++|+||+|+.
T Consensus 262 --g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 262 --GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred --CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 678999999999775432 3346788999999999998877766666665 4578999999999987
No 172
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.20 E-value=4.8e-11 Score=116.49 Aligned_cols=115 Identities=18% Similarity=0.139 Sum_probs=76.9
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
+++|++ +|+.++|||||+++|+...-.. ....|........... .++
T Consensus 1 ~~ki~v---~G~~~~GKSsli~~l~~~~~~~------------------~~~~t~~~~~~~~~v~------------~~~ 47 (163)
T cd01860 1 QFKLVL---LGDSSVGKSSLVLRFVKNEFSE------------------NQESTIGAAFLTQTVN------------LDD 47 (163)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHcCCCCC------------------CCCCccceeEEEEEEE------------ECC
Confidence 368999 9999999999999995322100 0011222111111111 122
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
....+++|||||+..|.......++.+|++++|+|+...-..+....| ..+.. .++|+++++||+|+.
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 467899999999999988888889999999999999876443332333 33333 346789999999986
No 173
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.20 E-value=8.3e-11 Score=115.40 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=77.5
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
+++|++ +|..|+|||||+++++...-.... ...++.......+.+ ++
T Consensus 2 ~~ki~i---~G~~~vGKSsli~~~~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~~ 48 (166)
T cd01869 2 LFKLLL---IGDSGVGKSCLLLRFADDTYTESY----------------ISTIGVDFKIRTIEL--------------DG 48 (166)
T ss_pred eEEEEE---ECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEE--------------CC
Confidence 578999 999999999999999532110000 001111111122222 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HHh---cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~~---~~~~~iv~iNKiD~~ 155 (794)
....+.+|||||+.+|.......++.+|++|+|+|+.+.........|.. +.. .++|.+++.||+|+.
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 49 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 35689999999999999888899999999999999987554443333322 222 457899999999986
No 174
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.20 E-value=8.8e-11 Score=112.75 Aligned_cols=109 Identities=25% Similarity=0.188 Sum_probs=79.0
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEEEc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlID 96 (794)
+|+.|+|||||+++|......... ..++.|.........+. ....+++||
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~---------------~~~~~~~~D 51 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVS---------------PVPGTTTDPVEYVWELG---------------PLGPVVLID 51 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccC---------------CCCCcEECCeEEEEEec---------------CCCcEEEEE
Confidence 799999999999999543222111 11223333333333332 267899999
Q ss_pred CCCccchH-------HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 97 SPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 97 TPGh~df~-------~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
|||+.++. ..+...++.+|++++|+|+..+.......++......+.|.++++||+|+.
T Consensus 52 t~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 52 TPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred CCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 99988764 344567899999999999999887777765667777899999999999987
No 175
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.20 E-value=1.8e-10 Score=113.56 Aligned_cols=114 Identities=22% Similarity=0.174 Sum_probs=78.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc--eEEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~ 84 (794)
..++|++ +|..++|||||+++++. +.... +.-.|+... ...+.+
T Consensus 4 ~~~ki~v---vG~~~~GKTsli~~~~~--~~~~~----------------~~~~~~~~~~~~~~~~~------------- 49 (170)
T cd04116 4 SLLKVIL---LGDGGVGKSSLMNRYVT--NKFDT----------------QLFHTIGVEFLNKDLEV------------- 49 (170)
T ss_pred eEEEEEE---ECCCCCCHHHHHHHHHc--CCCCc----------------CcCCceeeEEEEEEEEE-------------
Confidence 4689999 99999999999999952 11111 000122111 112222
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HH-------hcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL-------GERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~-------~~~~~~iv~iNKiD~~ 155 (794)
++....+.||||||+..|.......++.+|++|+|+|..+....+....|.. +. ..++|.++++||+|+.
T Consensus 50 -~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 50 -DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred -CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 2346788999999999999888899999999999999987755554444432 11 1357899999999985
No 176
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.19 E-value=1e-10 Score=112.64 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=77.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|+.++|||||+++|+...-.... .+..+.......+.. ...
T Consensus 1 ~~i~~---~G~~~~GKStl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~~~ 47 (159)
T cd00154 1 FKIVL---IGDSGVGKTSLLLRFVDGKFDENY----------------KSTIGVDFKSKTIEI--------------DGK 47 (159)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHhCcCCCcc----------------CCceeeeeEEEEEEE--------------CCE
Confidence 46888 999999999999999522211110 000111111122222 123
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHhc---CCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE---RIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~~---~~~~iv~iNKiD~~ 155 (794)
...+++|||||+..|.......++.+|++|+|+|+.+.........|. .+... +.|.++++||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 578999999999999999999999999999999998754444433343 33333 47899999999985
No 177
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.19 E-value=5.1e-11 Score=116.16 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=77.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|+.++|||||+++|+...-.... +...+.+. ....+.+. ..
T Consensus 1 ~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~--~~~~~~~~--------------~~ 47 (161)
T cd01863 1 LKILL---IGDSGVGKSSLLLRFTDDTFDPDL--------------AATIGVDF--KVKTLTVD--------------GK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCCCCccc--------------CCcccceE--EEEEEEEC--------------CE
Confidence 47888 999999999999999532111100 00111111 11122221 23
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-H----HhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A----LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~----~~~~~~~iv~iNKiD~~ 155 (794)
...+.+|||||+..|.......++.+|++++|+|+.+....+....|.. + ...++|.++++||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 5789999999999998888888999999999999987665554444422 2 23467889999999986
No 178
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.19 E-value=1.7e-10 Score=117.27 Aligned_cols=113 Identities=21% Similarity=0.217 Sum_probs=78.0
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc--eEEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++|++ +|..|+|||||+++|+.. .... ....|+... ...+.+. .
T Consensus 1 ~Kivi---vG~~~vGKTsli~~l~~~--~~~~----------------~~~~t~~~d~~~~~v~~~-------------~ 46 (201)
T cd04107 1 LKVLV---IGDLGVGKTSIIKRYVHG--IFSQ----------------HYKATIGVDFALKVIEWD-------------P 46 (201)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcC--CCCC----------------CCCCceeEEEEEEEEEEC-------------C
Confidence 47888 999999999999999532 1111 001222211 1112221 1
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HH-------hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL-------GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~-------~~~~~~iv~iNKiD~~ 155 (794)
+....+.||||||+..|.......++.+|++|+|+|.......+....|.. +. ..++|.++|.||+|+.
T Consensus 47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 346789999999999998888889999999999999987655554444432 11 2467899999999985
No 179
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.18 E-value=1.8e-10 Score=111.97 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=75.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+++|+... ....... |+... ...+.+ ++
T Consensus 2 ~ki~i---iG~~~vGKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~--------------~~ 46 (162)
T cd04138 2 YKLVV---VGAGGVGKSALTIQLIQNH--FVDEYDP----------------TIEDSYRKQVVI--------------DG 46 (162)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCC--CcCCcCC----------------cchheEEEEEEE--------------CC
Confidence 68899 9999999999999996322 1110000 11111 111122 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH----hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~----~~~~~~iv~iNKiD~~ 155 (794)
..+.+++|||||+.+|.......++.+|++++|+|..+....+....| ..+. ..++|+++++||+|+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 47 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 356789999999999999899999999999999999875443333222 2222 2467999999999986
No 180
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.18 E-value=1.6e-10 Score=113.10 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=77.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+++++. |....... .|+.... ..+.+ ++
T Consensus 2 ~ki~~---~G~~~~GKTsli~~~~~--~~~~~~~~----------------~t~~~~~~~~~~~--------------~~ 46 (164)
T cd04175 2 YKLVV---LGSGGVGKSALTVQFVQ--GIFVEKYD----------------PTIEDSYRKQVEV--------------DG 46 (164)
T ss_pred cEEEE---ECCCCCCHHHHHHHHHh--CCCCcccC----------------CcchheEEEEEEE--------------CC
Confidence 57888 99999999999999962 22211000 1221111 11222 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHH----hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
..+.+++|||||+..|.......++.+|++++|+|.......+... .+..+. ..++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 47 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 4678899999999999999999999999999999988665443322 223332 2467999999999986
No 181
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.18 E-value=8.3e-11 Score=119.31 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=80.3
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEEEc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlID 96 (794)
+|..++|||||+.++++ |... .++..|+.....+..+. .+++...++|||
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~----------------~~~~~Tig~~~~~~~~~------------~~~~~~~l~iwD 50 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFE----------------KKYVATLGVEVHPLVFH------------TNRGPIRFNVWD 50 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCC----------------CCCCCceeEEEEEEEEE------------ECCEEEEEEEEE
Confidence 59999999999999952 2111 12234544433333332 123468999999
Q ss_pred CCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HHh--cCCccEEEEecCccc
Q 003804 97 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 97 TPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~~--~~~~~iv~iNKiD~~ 155 (794)
|||+.+|.......++.+|++|+|+|.+...+.+....|.. +.+ .++|+++|.||+|+.
T Consensus 51 t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 51 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99999999988999999999999999999877776666644 333 468999999999985
No 182
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.18 E-value=9.2e-11 Score=114.71 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=76.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCccccc--ceEEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS--TGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~--~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++|++ +|+.++|||||+++|+...-. . ....|+.. ....+.+ +
T Consensus 1 ~ki~~---vG~~~vGKTsli~~l~~~~~~-~-----------------~~~~t~~~~~~~~~~~~--------------~ 45 (168)
T cd04119 1 IKVIS---MGNSGVGKSCIIKRYCEGRFV-S-----------------KYLPTIGIDYGVKKVSV--------------R 45 (168)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCC-C-----------------CCCCccceeEEEEEEEE--------------C
Confidence 47888 999999999999999532110 0 00112211 1111222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHh--------cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG--------ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~--------~~~~~iv~iNKiD~~ 155 (794)
+....+++|||||+.+|.......++.+|++|+|+|..+....+...-|. .+.+ .+.|.++++||.|+.
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 46 NKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred CeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 24678999999999999988888899999999999999765444443342 2221 356888999999985
No 183
>PTZ00369 Ras-like protein; Provisional
Probab=99.18 E-value=1.3e-10 Score=116.96 Aligned_cols=114 Identities=21% Similarity=0.272 Sum_probs=78.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~ 85 (794)
..++|++ +|..|+|||||+.+++... ... . .-.|+.... ..+.+
T Consensus 4 ~~~Ki~i---iG~~~~GKTsLi~~~~~~~--~~~---------~-------~~~t~~~~~~~~~~~-------------- 48 (189)
T PTZ00369 4 TEYKLVV---VGGGGVGKSALTIQFIQNH--FID---------E-------YDPTIEDSYRKQCVI-------------- 48 (189)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHhcCC--CCc---------C-------cCCchhhEEEEEEEE--------------
Confidence 4589999 9999999999999996321 110 0 001111111 11111
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHH----hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~----~~~~~~iv~iNKiD~~ 155 (794)
++..+.+++|||||+.+|.......++.+|++++|+|+.+..+.+....|. .+. ..++|+++++||+|+.
T Consensus 49 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 49 DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 224678999999999999999999999999999999999875544433332 222 2367899999999986
No 184
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.18 E-value=1.2e-10 Score=115.06 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=77.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.++|||||+.+|.. +... +. ..|+......+.+
T Consensus 8 ~~~kv~i---~G~~~~GKTsli~~l~~--~~~~----------~~-------~~t~g~~~~~~~~--------------- 50 (168)
T cd04149 8 KEMRILM---LGLDAAGKTTILYKLKL--GQSV----------TT-------IPTVGFNVETVTY--------------- 50 (168)
T ss_pred CccEEEE---ECcCCCCHHHHHHHHcc--CCCc----------cc-------cCCcccceEEEEE---------------
Confidence 5689999 99999999999999942 1110 00 0122222222223
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
.+..+++|||||+..|.......++.+|++|+|+|+.+...... ...|..... .++|.+++.||+|+.
T Consensus 51 -~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 51 -KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred -CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 36889999999999998878888999999999999987533222 233333332 357899999999986
No 185
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.17 E-value=7.7e-11 Score=115.60 Aligned_cols=112 Identities=17% Similarity=0.275 Sum_probs=73.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|..|+|||||+.+++. +... ++ +..... +... ....+ +++.
T Consensus 1 ki~v---vG~~~~GKtsli~~~~~--~~~~----~~--~~~t~~-------~~~~--~~~~~--------------~~~~ 46 (165)
T cd04146 1 KIAV---LGASGVGKSALVVRFLT--KRFI----GE--YDPNLE-------SLYS--RQVTI--------------DGEQ 46 (165)
T ss_pred CEEE---ECCCCCcHHHHHHHHHh--Cccc----cc--cCCChH-------Hhce--EEEEE--------------CCEE
Confidence 4677 99999999999999963 1111 10 000000 1111 11111 2235
Q ss_pred eEEEEEcCCCccc-hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHH-----hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL-----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~d-f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~-----~~~~~~iv~iNKiD~~ 155 (794)
..+++|||||+.. +.......++.+|++|+|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 6799999999985 4566788899999999999999876555443332 222 2368999999999985
No 186
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.17 E-value=1.3e-10 Score=114.81 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=77.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|... .... ...|.......+.+.
T Consensus 12 ~~~~~v~i---~G~~g~GKStLl~~l~~~--~~~~-----------------~~~t~g~~~~~i~~~------------- 56 (173)
T cd04155 12 SEEPRILI---LGLDNAGKTTILKQLASE--DISH-----------------ITPTQGFNIKTVQSD------------- 56 (173)
T ss_pred CCccEEEE---EccCCCCHHHHHHHHhcC--CCcc-----------------cCCCCCcceEEEEEC-------------
Confidence 34688999 999999999999999321 0000 011222222233342
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcch-hHHHHHHHH----HhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQA----LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~-qt~~~~~~~----~~~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+..|...+...++.+|++++|+|+.+-... .....+... ...++|.++++||+|+.
T Consensus 57 ---~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 ---GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 67899999999999988888889999999999999863222 122222222 33568999999999986
No 187
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.17 E-value=2.8e-10 Score=111.18 Aligned_cols=109 Identities=21% Similarity=0.194 Sum_probs=74.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|+.++|||||+.++.. |.. .++. .|+......+.+ .
T Consensus 1 ~kv~~---~G~~~~GKTsli~~l~~--~~~----------~~~~-------pt~g~~~~~~~~----------------~ 42 (159)
T cd04150 1 MRILM---VGLDAAGKTTILYKLKL--GEI----------VTTI-------PTIGFNVETVEY----------------K 42 (159)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhc--CCC----------cccC-------CCCCcceEEEEE----------------C
Confidence 37888 99999999999999842 111 1111 122222222333 2
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh-HHHHHHHHHh----cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q-t~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
...+++|||||+..|.......++.+|++|+|+|+.+-.... ....|..+.. .+.|+++++||+|+.
T Consensus 43 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 688999999999999888888899999999999998643222 2233333322 247888999999986
No 188
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.17 E-value=2.6e-10 Score=111.17 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=75.0
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCccccc-ceEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-TGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+++|+... ......+ |+.. ......+ ++
T Consensus 1 ~ki~~---~G~~~~GKTsl~~~l~~~~--~~~~~~~----------------~~~~~~~~~~~~--------------~~ 45 (164)
T cd04139 1 YKVIV---VGAGGVGKSALTLQFMYDE--FVEDYEP----------------TKADSYRKKVVL--------------DG 45 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CccccCC----------------cchhhEEEEEEE--------------CC
Confidence 47888 9999999999999996321 1111011 1100 0011111 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcch-----hHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-----QTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~-----qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+.+.+|||||+.+|......+++.+|++++|+|....-.. ....+++.....++|+++++||+|+.
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 367899999999999999999999999999999998764321 11122222123578999999999986
No 189
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.17 E-value=1.3e-10 Score=119.85 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=82.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|..|+|||||+.+++. +.... +...|+........+. .
T Consensus 11 ~~~~Ki~v---vG~~gvGKTsli~~~~~--~~f~~----------------~~~~tig~~~~~~~~~------------~ 57 (219)
T PLN03071 11 YPSFKLVI---VGDGGTGKTTFVKRHLT--GEFEK----------------KYEPTIGVEVHPLDFF------------T 57 (219)
T ss_pred CCceEEEE---ECcCCCCHHHHHHHHhh--CCCCC----------------ccCCccceeEEEEEEE------------E
Confidence 45689999 99999999999999853 21110 1112333222222232 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HH--hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~--~~~~~~iv~iNKiD~~ 155 (794)
++....+++|||||+.+|..-....++.+|++|+|+|.+.....+...-|.. +. ..++|.++|.||+|+.
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 2235799999999999998777788899999999999998766665555522 22 2467999999999985
No 190
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.17 E-value=1.3e-10 Score=118.06 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=79.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce--EEEEeecchhhhhccccccCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.|++ +|..|+|||||+.++.+ +.... +...|+.... ..+.+ ++
T Consensus 2 ~vvv---lG~~gVGKTSli~r~~~--~~f~~----------------~~~~Ti~~~~~~~~i~~--------------~~ 46 (202)
T cd04120 2 QVII---IGSRGVGKTSLMRRFTD--DTFCE----------------ACKSGVGVDFKIKTVEL--------------RG 46 (202)
T ss_pred EEEE---ECcCCCCHHHHHHHHHh--CCCCC----------------cCCCcceeEEEEEEEEE--------------CC
Confidence 4677 99999999999999953 21111 1112332221 12222 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH----hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+.+.++||||||+..|.......++.+|++|+|+|.++....+...-|.... ..++|++++.||+|+.
T Consensus 47 ~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 47 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 4588999999999999998999999999999999999877666655554332 2357889999999985
No 191
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.16 E-value=1.5e-10 Score=117.92 Aligned_cols=114 Identities=25% Similarity=0.199 Sum_probs=72.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|+...-.... ..+.|+......+.+.
T Consensus 41 ~~~I~i---iG~~g~GKStLl~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~--------------- 86 (204)
T cd01878 41 IPTVAL---VGYTNAGKSTLFNALTGADVYAED----------------QLFATLDPTTRRLRLP--------------- 86 (204)
T ss_pred CCeEEE---ECCCCCCHHHHHHHHhcchhccCC----------------ccceeccceeEEEEec---------------
Confidence 468999 999999999999999543211110 0112333333333443
Q ss_pred CceEEEEEcCCCccch-H-------HHHHHhhhccCceEEEEeCCCCcchhHHHHH----HHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDF-S-------SEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df-~-------~e~~~~l~~~D~ailvvda~~gv~~qt~~~~----~~~~~~~~~~iv~iNKiD~~ 155 (794)
+...+.+|||||+.+. . ..+...+..+|++++|+|+.++........| +.+...++|+++|+||+|+.
T Consensus 87 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 87 DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 2348999999998431 1 1122346789999999999987654433223 22223467899999999987
No 192
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.16 E-value=1.4e-10 Score=113.85 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=76.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceE-EEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+++++. +..... +. .|+..... .+.+ ..
T Consensus 2 ~kv~~---vG~~~vGKTsli~~~~~--~~f~~~------~~----------~t~~~~~~~~~~~--------------~~ 46 (165)
T cd04140 2 YRVVV---FGAGGVGKSSLVLRFVK--GTFRES------YI----------PTIEDTYRQVISC--------------SK 46 (165)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHh--CCCCCC------cC----------CcchheEEEEEEE--------------CC
Confidence 57888 99999999999999953 211110 00 01111111 1111 12
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh------cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG------ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~------~~~~~iv~iNKiD~~ 155 (794)
+...+++|||||+.+|......+++.+|++|+|+|.......... ..|..+.. .++|++++.||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 367899999999999988888889999999999999887655433 33333332 467999999999986
No 193
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.16 E-value=1.3e-10 Score=117.09 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=75.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..|+|||||+.++....-.... ...|+........+. .++.
T Consensus 1 ~Ki~v---vG~~~vGKTSli~~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~------------~~~~ 48 (191)
T cd04112 1 FKVML---LGDSGVGKTCLLVRFKDGAFLNGN-----------------FIATVGIDFRNKVVT------------VDGV 48 (191)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCCCccC-----------------cCCcccceeEEEEEE------------ECCE
Confidence 47888 999999999999999532211100 011222111111111 1223
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH---hcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~---~~~~~~iv~iNKiD~~ 155 (794)
...++||||||+..|.......++.+|++|+|+|+......+....| ..+. ..++|+++++||+|+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 57899999999999988888889999999999999876444332223 2232 2367888999999985
No 194
>PLN03118 Rab family protein; Provisional
Probab=99.16 E-value=1.8e-10 Score=118.00 Aligned_cols=114 Identities=19% Similarity=0.265 Sum_probs=79.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+.+|+... ... . ...++.......+.+ ++
T Consensus 14 ~~kv~i---vG~~~vGKTsli~~l~~~~--~~~--~-------------~~t~~~~~~~~~~~~--------------~~ 59 (211)
T PLN03118 14 SFKILL---IGDSGVGKSSLLVSFISSS--VED--L-------------APTIGVDFKIKQLTV--------------GG 59 (211)
T ss_pred ceEEEE---ECcCCCCHHHHHHHHHhCC--CCC--c-------------CCCceeEEEEEEEEE--------------CC
Confidence 579999 9999999999999996421 111 0 000111111122222 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHH-----hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~-----~~~~~~iv~iNKiD~~ 155 (794)
..+.++||||||+.+|.......++.+|++|+|+|+.+....+.. ..|.... ..+.|.++++||+|+.
T Consensus 60 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 60 KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred EEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 357899999999999999889999999999999999986555544 2453322 2356888999999986
No 195
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.16 E-value=3e-10 Score=112.82 Aligned_cols=111 Identities=20% Similarity=0.160 Sum_probs=78.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|..++|||||+.+|.. |.. .+. ..|+......+.+
T Consensus 12 ~~~ki~l---~G~~~~GKTsL~~~~~~--~~~----------~~~-------~~t~~~~~~~~~~--------------- 54 (175)
T smart00177 12 KEMRILM---VGLDAAGKTTILYKLKL--GES----------VTT-------IPTIGFNVETVTY--------------- 54 (175)
T ss_pred CccEEEE---EcCCCCCHHHHHHHHhc--CCC----------CCc-------CCccccceEEEEE---------------
Confidence 4689999 99999999999999942 111 010 1233322223333
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcch-hHHHHHHHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~-qt~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..+.+|||||+..|.......++.+|++|+|+|+++-... .....|..+.. .++|+++++||.|+.
T Consensus 55 -~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 55 -KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred -CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 368899999999999998888889999999999999864322 22334444332 357889999999986
No 196
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.15 E-value=1.2e-10 Score=118.15 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=75.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCccc-ccceEEEEeecchhhhhccccccCCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI-KSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
+|++ +|+.|+|||||+++++... ... +...|+ ......+.+. +.
T Consensus 1 kv~v---vG~~~vGKTsll~~~~~~~--~~~----------------~~~~t~~~~~~~~~~~~--------------~~ 45 (198)
T cd04147 1 RLVF---MGAAGVGKTALIQRFLYDT--FEP----------------KYRRTVEEMHRKEYEVG--------------GV 45 (198)
T ss_pred CEEE---ECCCCCCHHHHHHHHHhCC--CCc----------------cCCCchhhheeEEEEEC--------------CE
Confidence 4677 9999999999999996421 111 000111 1111222232 23
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH----hcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~----~~~~~~iv~iNKiD~~ 155 (794)
...++||||||+.+|.......++.+|++|+|+|+++....+....| ..+. ..++|+++++||+|+.
T Consensus 46 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 46 SLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 47899999999999988778889999999999999886544433333 2222 2478999999999986
No 197
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.15 E-value=2.4e-10 Score=112.81 Aligned_cols=108 Identities=19% Similarity=0.096 Sum_probs=74.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|..++|||||+.+|... ... + ...|+......+.+ ++
T Consensus 1 ~vvl---vG~~~~GKTsl~~~l~~~--~~~----------~-------~~~T~~~~~~~~~~----------------~~ 42 (169)
T cd04158 1 RVVT---LGLDGAGKTTILFKLKQD--EFM----------Q-------PIPTIGFNVETVEY----------------KN 42 (169)
T ss_pred CEEE---ECCCCCCHHHHHHHHhcC--CCC----------C-------cCCcCceeEEEEEE----------------CC
Confidence 4677 999999999999999432 110 0 11233222223333 37
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHHHHh----cCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
..+++|||||+.+|.......++.+|++++|+|+.+.-.... ...+..+.. .+.|+++++||+|+.
T Consensus 43 ~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 43 LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred EEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 899999999999998888889999999999999986432222 222333332 246888999999986
No 198
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.15 E-value=3.6e-10 Score=113.00 Aligned_cols=111 Identities=22% Similarity=0.176 Sum_probs=77.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|..++|||||+.+|.. +.... . ..|+......+.+
T Consensus 16 ~~~ki~i---vG~~~~GKTsl~~~l~~--~~~~~----------~-------~pt~g~~~~~~~~--------------- 58 (181)
T PLN00223 16 KEMRILM---VGLDAAGKTTILYKLKL--GEIVT----------T-------IPTIGFNVETVEY--------------- 58 (181)
T ss_pred CccEEEE---ECCCCCCHHHHHHHHcc--CCCcc----------c-------cCCcceeEEEEEE---------------
Confidence 4689999 99999999999999942 11110 0 1222222223333
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..+++|||||+..|.......++.+|++|+|+|+++....+. ...+..... .++|+++++||+|+.
T Consensus 59 -~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 59 -KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred -CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 37899999999999998888888999999999999987543322 222232221 367899999999987
No 199
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.15 E-value=2e-10 Score=112.73 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=68.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|+.|+|||||+++|+...-.. + ...+.|.......+.+ ++
T Consensus 2 ~i~~---~G~~~~GKssli~~l~~~~~~~-----~-----------~~~~~t~~~~~~~~~~----------------~~ 46 (168)
T cd01897 2 TLVI---AGYPNVGKSSLVNKLTRAKPEV-----A-----------PYPFTTKSLFVGHFDY----------------KY 46 (168)
T ss_pred eEEE---EcCCCCCHHHHHHHHhcCCCcc-----C-----------CCCCcccceeEEEEcc----------------Cc
Confidence 5788 9999999999999995321100 0 0112233333222233 36
Q ss_pred eEEEEEcCCCccchH--------HHHHHhh-hccCceEEEEeCCCCcc---hhHHHHHHHHHhc--CCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGVC---VQTETVLRQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~--------~e~~~~l-~~~D~ailvvda~~gv~---~qt~~~~~~~~~~--~~~~iv~iNKiD~~ 155 (794)
..++||||||+.+.. .....++ ..+|++|+|+|+.+... ......+..+... +.|+++++||+|+.
T Consensus 47 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 47 LRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred eEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 899999999985311 1122222 34699999999986532 1112344444444 78999999999986
No 200
>PRK04213 GTP-binding protein; Provisional
Probab=99.15 E-value=2.1e-10 Score=116.44 Aligned_cols=110 Identities=23% Similarity=0.225 Sum_probs=73.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|.... . ..+...|.|.... .+.+
T Consensus 8 ~~~~i~i---~G~~~~GKSsLin~l~~~~--~--------------~~~~~~~~t~~~~--~~~~--------------- 51 (201)
T PRK04213 8 RKPEIVF---VGRSNVGKSTLVRELTGKK--V--------------RVGKRPGVTRKPN--HYDW--------------- 51 (201)
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCC--C--------------ccCCCCceeeCce--EEee---------------
Confidence 3468999 9999999999999994211 0 0111234554432 2222
Q ss_pred CCceEEEEEcCCCccc-----------hHHHHH----HhhhccCceEEEEeCCCC-----------cchhHHHHHHHHHh
Q 003804 87 GNEYLINLIDSPGHVD-----------FSSEVT----AALRITDGALVVVDCIEG-----------VCVQTETVLRQALG 140 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d-----------f~~e~~----~~l~~~D~ailvvda~~g-----------v~~qt~~~~~~~~~ 140 (794)
+ .+++|||||+.+ |...+. .++..+|++++|+|+... ...++..++..+..
T Consensus 52 --~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (201)
T PRK04213 52 --G-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE 128 (201)
T ss_pred --c-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH
Confidence 1 589999999532 322222 244567899999999653 23345667777777
Q ss_pred cCCccEEEEecCccc
Q 003804 141 ERIRPVLTVNKMDRC 155 (794)
Q Consensus 141 ~~~~~iv~iNKiD~~ 155 (794)
.++|+++++||+|+.
T Consensus 129 ~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 129 LGIPPIVAVNKMDKI 143 (201)
T ss_pred cCCCeEEEEECcccc
Confidence 899999999999986
No 201
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.14 E-value=1.5e-10 Score=110.49 Aligned_cols=96 Identities=21% Similarity=0.175 Sum_probs=67.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|+.|+|||||+++|. |... ....| ....|. .
T Consensus 2 kv~l---iG~~~vGKSsL~~~l~-----------~~~~---------~~~~t-----~~~~~~----------------~ 37 (142)
T TIGR02528 2 RIMF---IGSVGCGKTTLTQALQ-----------GEEI---------LYKKT-----QAVEYN----------------D 37 (142)
T ss_pred eEEE---ECCCCCCHHHHHHHHc-----------CCcc---------ccccc-----eeEEEc----------------C
Confidence 6888 9999999999999993 2100 00111 223442 2
Q ss_pred eEEEEEcCCCcc----chHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHV----DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~----df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+|||||+. .+...+...++.+|++|+|+|+.++.+.+....+.. .+.|.++++||+|+.
T Consensus 38 ---~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 38 ---GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred ---eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 689999973 334444456899999999999999887766433322 235889999999986
No 202
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.5e-10 Score=110.70 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=89.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.-.++|.+ +|..|+|||.|+-++ .+ |..+++...-|.++....++..
T Consensus 7 dylFKiil---iGds~VGKtCL~~Rf-----------~~-----~~f~e~~~sTIGVDf~~rt~e~-------------- 53 (205)
T KOG0084|consen 7 DYLFKIIL---IGDSGVGKTCLLLRF-----------KD-----DTFTESYISTIGVDFKIRTVEL-------------- 53 (205)
T ss_pred ceEEEEEE---ECCCCcChhhhhhhh-----------cc-----CCcchhhcceeeeEEEEEEeee--------------
Confidence 44689999 999999999999998 22 1222333333444444444444
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHH---hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~---~~~~~~iv~iNKiD~~ 155 (794)
+++..++.+|||+|+.+|...+...+|.|+|+|+|.|.++--+......|- .+. ..++|.++|.||.|+.
T Consensus 54 ~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 54 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred cceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 456789999999999999999999999999999999999877777766663 232 3467999999999986
No 203
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.14 E-value=1.9e-10 Score=112.96 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=75.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc--cceEEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++|++ +|..|+|||||+++|+... ... .+ -.|+. .....+.. +
T Consensus 2 ~ki~i---~G~~~~GKSsli~~l~~~~--~~~---------~~-------~~t~~~~~~~~~~~~--------------~ 46 (165)
T cd01865 2 FKLLI---IGNSSVGKTSFLFRYADDS--FTS---------AF-------VSTVGIDFKVKTVFR--------------N 46 (165)
T ss_pred eEEEE---ECCCCCCHHHHHHHHhcCC--CCC---------CC-------CCceeeEEEEEEEEE--------------C
Confidence 68999 9999999999999995311 100 00 01111 11111111 1
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....+.+|||||+.+|.......++.+|++++|+|..+....+...-| +.+.. ...|.++++||+|+.
T Consensus 47 ~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 47 DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred CEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 2357899999999999998889999999999999999875444433333 23322 356888999999986
No 204
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.14 E-value=4.7e-10 Score=110.46 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=82.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
..-||+ +|++++|||||+++|....+..... +..|.|..... |.+.
T Consensus 24 ~~EIaF---~GRSNVGKSSlIN~l~~~k~LArtS--------------ktPGrTq~iNf--f~~~--------------- 69 (200)
T COG0218 24 LPEIAF---AGRSNVGKSSLINALTNQKNLARTS--------------KTPGRTQLINF--FEVD--------------- 69 (200)
T ss_pred CcEEEE---EccCcccHHHHHHHHhCCcceeecC--------------CCCCccceeEE--EEec---------------
Confidence 458999 9999999999999996544432221 11344544432 3332
Q ss_pred CceEEEEEcCCCcc----------chHHHHHHhh---hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCcc
Q 003804 88 NEYLINLIDSPGHV----------DFSSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~----------df~~e~~~~l---~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~ 154 (794)
-.+.|+|.||+. .+...+...+ ....+++++||+.+++....+++++.+...++|.++++||+|+
T Consensus 70 --~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DK 147 (200)
T COG0218 70 --DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADK 147 (200)
T ss_pred --CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 238899999973 1223344444 3578899999999999999999999999999999999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
+
T Consensus 148 i 148 (200)
T COG0218 148 L 148 (200)
T ss_pred C
Confidence 8
No 205
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.13 E-value=2.5e-10 Score=115.88 Aligned_cols=114 Identities=19% Similarity=0.189 Sum_probs=78.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc--cceEEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~ 84 (794)
.+++|++ +|..|+|||||+++++... ... +...|+. .....+.+
T Consensus 5 ~~~kivv---vG~~~vGKTsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~------------- 50 (199)
T cd04110 5 HLFKLLI---IGDSGVGKSSLLLRFADNT--FSG----------------SYITTIGVDFKIRTVEI------------- 50 (199)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHhcCC--CCC----------------CcCccccceeEEEEEEE-------------
Confidence 3689999 9999999999999995311 100 0011222 11122222
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH--hcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~--~~~~~~iv~iNKiD~~ 155 (794)
.+....++||||||+..|.......++.+|++|+|+|+++.-..+....| ..+. ....|.++++||+|+.
T Consensus 51 -~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 51 -NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred -CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 12356789999999999998889999999999999999876554443333 2222 2346889999999986
No 206
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.13 E-value=2.2e-10 Score=113.56 Aligned_cols=113 Identities=18% Similarity=0.247 Sum_probs=79.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccccC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (794)
.++|++ +|..|+|||||+.+++. +..... ...|+.... ..+.+ +
T Consensus 2 ~~ki~v---vG~~~vGKTsL~~~~~~--~~f~~~----------------~~~t~~~~~~~~~~~--------------~ 46 (172)
T cd04141 2 EYKIVM---LGAGGVGKSAVTMQFIS--HSFPDY----------------HDPTIEDAYKQQARI--------------D 46 (172)
T ss_pred ceEEEE---ECCCCCcHHHHHHHHHh--CCCCCC----------------cCCcccceEEEEEEE--------------C
Confidence 478999 99999999999999953 211110 011221111 11122 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHH----hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~----~~~~~~iv~iNKiD~~ 155 (794)
+....++||||||..+|.......++.+|++|+|+|..+....++..-|. .+. ..++|+++++||+|+.
T Consensus 47 ~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 47 NEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred CEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 24578999999999999988889999999999999999887766654332 222 2467999999999985
No 207
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.13 E-value=2e-10 Score=111.79 Aligned_cols=109 Identities=28% Similarity=0.227 Sum_probs=73.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|..|+|||||++++.... ... . ..|+......+.+. ..
T Consensus 1 ~i~i---~G~~~~GKTsl~~~~~~~~--~~~----------~-------~~t~~~~~~~~~~~---------------~~ 43 (160)
T cd04156 1 QVLL---LGLDSAGKSTLLYKLKHAE--LVT----------T-------IPTVGFNVEMLQLE---------------KH 43 (160)
T ss_pred CEEE---EcCCCCCHHHHHHHHhcCC--ccc----------c-------cCccCcceEEEEeC---------------Cc
Confidence 3677 9999999999999995321 100 0 01221111122222 35
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHHHH----hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+.++++||||+..|.......++.+|++|+|+|+.+...... ...+..+. ..+.|+++++||+|+.
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 789999999999988888888999999999999987642221 22222222 2478999999999986
No 208
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.13 E-value=3.1e-10 Score=110.93 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=77.0
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..++|||||+.+|++....... +.-.|+........+.. ..+.
T Consensus 1 ~ki~v---vG~~~~GKtsl~~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~-----------~~~~ 50 (164)
T cd04101 1 LRCAV---VGDPAVGKTAFVQMFHSNGAVFPK----------------NYLMTTGCDFVVKEVPV-----------DTDN 50 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCCCcCc----------------cCCCceEEEEEEEEEEe-----------CCCC
Confidence 47888 999999999999999532111111 01112221111111110 1234
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh--cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
...+.+|||||+..|.......++.+|++++|+|..+........-| ..+.. .++|.++++||+|+.
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 67899999999999888888999999999999999875444333333 22222 357999999999985
No 209
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.12 E-value=2.5e-10 Score=111.82 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=77.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
+++|++ +|..++|||||+++|+...-.... ...++.......+.+. +
T Consensus 3 ~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~ 49 (165)
T cd01868 3 LFKIVL---IGDSGVGKSNLLSRFTRNEFNLDS----------------KSTIGVEFATRSIQID--------------G 49 (165)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEEC--------------C
Confidence 478999 999999999999999532110000 0111112222222222 2
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
....+.+|||||+..|.......++.+|++|+|+|+.+....+...-| ..+.. .++|+++++||.|+.
T Consensus 50 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 50 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 346799999999999888888889999999999999865444433333 22222 357888999999986
No 210
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.12 E-value=2.5e-10 Score=111.35 Aligned_cols=112 Identities=22% Similarity=0.267 Sum_probs=75.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+++++... .... +. .|+... ...+.. ++
T Consensus 2 ~ki~i---~G~~~vGKTsl~~~~~~~~--~~~~---------~~-------~t~~~~~~~~~~~--------------~~ 46 (163)
T cd04136 2 YKVVV---LGSGGVGKSALTVQFVQGI--FVEK---------YD-------PTIEDSYRKQIEV--------------DG 46 (163)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCC--CCcc---------cC-------CchhhhEEEEEEE--------------CC
Confidence 68899 9999999999999996321 1110 00 111100 111112 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
....+.||||||+.+|.......++.+|++++|+|..+.........| ..+.. .++|.++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 47 QQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 356788999999999988888889999999999999875443333222 33322 367889999999986
No 211
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.12 E-value=2.1e-10 Score=116.41 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=72.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..|+|||||+++++... ... .+.+ .++.......+.+. ++
T Consensus 1 ~kI~i---vG~~~vGKTsLi~~~~~~~--f~~---------~~~p-----t~~~~~~~~~i~~~--------------~~ 47 (198)
T cd04142 1 VRVAV---LGAPGVGKTAIVRQFLAQE--FPE---------EYIP-----TEHRRLYRPAVVLS--------------GR 47 (198)
T ss_pred CEEEE---ECCCCCcHHHHHHHHHcCC--CCc---------ccCC-----ccccccceeEEEEC--------------CE
Confidence 47888 9999999999999995321 110 0000 00011111122232 23
Q ss_pred ceEEEEEcCCCccchH----HH----HHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH------hcCCccEEEEecCc
Q 003804 89 EYLINLIDSPGHVDFS----SE----VTAALRITDGALVVVDCIEGVCVQTETVL-RQAL------GERIRPVLTVNKMD 153 (794)
Q Consensus 89 ~~~inlIDTPGh~df~----~e----~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~------~~~~~~iv~iNKiD 153 (794)
.+.++||||||+.+|. .+ ...+++.+|++|+|+|+.+..+.+....| +.+. ..++|++++.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 5789999999987652 12 44568899999999999987555543333 2332 24579999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 128 l~ 129 (198)
T cd04142 128 QQ 129 (198)
T ss_pred cc
Confidence 96
No 212
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.12 E-value=2.9e-10 Score=111.98 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=76.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+++++... .... .+ .|+... ...+.+ ++
T Consensus 2 ~ki~l---iG~~~~GKTsli~~~~~~~--~~~~-------~~---------~t~~~~~~~~~~~--------------~~ 46 (168)
T cd04177 2 YKIVV---LGAGGVGKSALTVQFVQNV--FIES-------YD---------PTIEDSYRKQVEI--------------DG 46 (168)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCC--CCcc-------cC---------CcchheEEEEEEE--------------CC
Confidence 57888 9999999999999995222 1110 00 011111 112222 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-----HHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-----ALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-----~~~~~~~~iv~iNKiD~~ 155 (794)
....+.+|||||+.+|.......++.+|++|+|+|..+....+...-|.. ....++|.++++||+|+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 47 RQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 35788999999999999999999999999999999987644443333322 223468999999999986
No 213
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.12 E-value=3.5e-10 Score=112.54 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=77.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+|++ +|+.|+|||||+++++...- ... +... +.......+.+ ++.
T Consensus 2 ~kv~l---~G~~g~GKTtl~~~~~~~~~-~~~-------~~~t---------~~~~~~~~~~~--------------~~~ 47 (180)
T cd04137 2 RKIAV---LGSRSVGKSSLTVQFVEGHF-VES-------YYPT---------IENTFSKIIRY--------------KGQ 47 (180)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCCC-ccc-------cCcc---------hhhhEEEEEEE--------------CCE
Confidence 47888 99999999999999963221 100 0000 00001111222 123
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHH-HHHHHh----cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~-~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++.+.+|||||+.+|.......+..+|++++|+|..++...+.... |..... .++|.++++||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 5778999999999999888889999999999999998766555433 333332 467999999999986
No 214
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.12 E-value=2.6e-10 Score=125.00 Aligned_cols=114 Identities=20% Similarity=0.290 Sum_probs=90.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
.-++++| +|.+|+|||||+|+|+.+..+|..+.+|+ |.+.-...+..
T Consensus 216 ~G~kvvI---iG~PNvGKSSLLNaL~~~d~AIVTdI~GT---------------TRDviee~i~i--------------- 262 (454)
T COG0486 216 EGLKVVI---IGRPNVGKSSLLNALLGRDRAIVTDIAGT---------------TRDVIEEDINL--------------- 262 (454)
T ss_pred cCceEEE---ECCCCCcHHHHHHHHhcCCceEecCCCCC---------------ccceEEEEEEE---------------
Confidence 3479999 99999999999999999999998887774 34443444444
Q ss_pred CCceEEEEEcCCCccc---hHH-----HHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVD---FSS-----EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d---f~~-----e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+++.+.++||+|-.+ ... ....++..||.+++|+|+..+...+...++. ....+.|.++++||.|+.
T Consensus 263 -~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~ 337 (454)
T COG0486 263 -NGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLV 337 (454)
T ss_pred -CCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcc
Confidence 499999999999653 322 2456678999999999999986666666655 556778999999999998
No 215
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.7e-11 Score=130.96 Aligned_cols=128 Identities=29% Similarity=0.363 Sum_probs=104.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc----------C--Cc---eeecCChhhHhhhCcccccceEEEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------A--GD---VRMTDTRQDEAERGITIKSTGISLY 70 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----------~--G~---~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (794)
...+|+++ +||+++||||++. +..|.++.+. . |. ++.+|....|++||++|..+...+.
T Consensus 5 ~~~~ni~~---i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~ 78 (391)
T KOG0052|consen 5 KIHINIVV---IGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 78 (391)
T ss_pred ccccceEE---EEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccc
Confidence 45689999 9999999999988 6667776541 1 21 4689999999999999766654443
Q ss_pred eecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-------cchhHHHHHHHHHhcCC
Q 003804 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (794)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-------v~~qt~~~~~~~~~~~~ 143 (794)
- ..+.+++||.|||.||..++..+.+++|.|+++|.+.-| ...||+++.-.+..+++
T Consensus 79 t----------------~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv 142 (391)
T KOG0052|consen 79 T----------------SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 142 (391)
T ss_pred c----------------eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccc
Confidence 3 478999999999999999999999999999999998432 56899999888888887
Q ss_pred -ccEEEEecCccc
Q 003804 144 -RPVLTVNKMDRC 155 (794)
Q Consensus 144 -~~iv~iNKiD~~ 155 (794)
++++-+||||..
T Consensus 143 ~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 143 KQLIVGVNKMDST 155 (391)
T ss_pred eeeeEEeeccccc
Confidence 567889999976
No 216
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.10 E-value=3.9e-10 Score=112.21 Aligned_cols=124 Identities=19% Similarity=0.119 Sum_probs=78.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc--cceEEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~ 84 (794)
..++|++ +|..++|||||++++.... ... +...|+. .....+.+..... ....
T Consensus 3 ~~~ki~i---vG~~~vGKTsli~~~~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~----~~~~ 57 (180)
T cd04127 3 YLIKFLA---LGDSGVGKTSFLYQYTDNK--FNP----------------KFITTVGIDFREKRVVYNSSGP----GGTL 57 (180)
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHhcCC--CCc----------------cCCCccceEEEEEEEEEcCccc----cccc
Confidence 3578999 9999999999999994321 110 0001221 1111122210000 0000
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHh----cCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~----~~~~~iv~iNKiD~~ 155 (794)
..+....+.||||||+..|.......++.+|++|+|+|+.+....+...-|. .+.. .+.|++++.||+|+.
T Consensus 58 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 58 GRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred cCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 1124578999999999999988899999999999999998765544444342 2222 356788999999986
No 217
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.10 E-value=3.8e-10 Score=111.62 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=75.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|..++|||||+.+++.. .... +...|+........+. .++..
T Consensus 2 ki~i---vG~~~vGKTsli~~~~~~--~f~~----------------~~~~t~~~~~~~~~~~------------~~~~~ 48 (170)
T cd04108 2 KVIV---VGDLSVGKTCLINRFCKD--VFDK----------------NYKATIGVDFEMERFE------------ILGVP 48 (170)
T ss_pred EEEE---ECCCCCCHHHHHHHHhcC--CCCC----------------CCCCceeeEEEEEEEE------------ECCEE
Confidence 6788 999999999999999632 1110 1112333222211221 12345
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHhcC----CccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGER----IRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~~~----~~~iv~iNKiD~~ 155 (794)
..++||||||+.+|.......++.+|++|+|+|+.+........-|. .+.+.. .|.++|.||+|+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 78999999999999988889999999999999998754444433343 333322 3467999999985
No 218
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.10 E-value=5.6e-10 Score=109.05 Aligned_cols=112 Identities=22% Similarity=0.267 Sum_probs=75.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc-cceEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+.+++. |....... .|+. .....+.. ++
T Consensus 2 ~ki~i---~G~~~vGKTsl~~~~~~--~~~~~~~~----------------~t~~~~~~~~~~~--------------~~ 46 (163)
T cd04176 2 YKVVV---LGSGGVGKSALTVQFVS--GTFIEKYD----------------PTIEDFYRKEIEV--------------DS 46 (163)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHc--CCCCCCCC----------------CchhheEEEEEEE--------------CC
Confidence 68999 99999999999999853 22211000 0111 01111111 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
....+.||||||+..|.......++.+|++|+|+|.++....+...-| ..+.. .++|.++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 47 SPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 356788999999999988888889999999999999876544433333 23322 468999999999985
No 219
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.10 E-value=4.7e-10 Score=113.00 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=74.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccccCCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
+|++ +|..|+|||||+++|+. +....... .|+.... ..+.+ ++.
T Consensus 1 ki~i---vG~~~vGKTsli~~l~~--~~f~~~~~----------------~t~~~~~~~~~~~--------------~~~ 45 (190)
T cd04144 1 KLVV---LGDGGVGKTALTIQLCL--NHFVETYD----------------PTIEDSYRKQVVV--------------DGQ 45 (190)
T ss_pred CEEE---ECCCCCCHHHHHHHHHh--CCCCccCC----------------CchHhhEEEEEEE--------------CCE
Confidence 4677 99999999999999963 21111000 1111111 11112 123
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh------cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~------~~~~~iv~iNKiD~~ 155 (794)
...+.||||||+.+|.......++.+|++|+|+|..+.........| ..+.. .++|.+++.||+|+.
T Consensus 46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 46789999999999998888999999999999999876544443333 32321 357889999999985
No 220
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.10 E-value=2.9e-10 Score=125.02 Aligned_cols=113 Identities=31% Similarity=0.293 Sum_probs=75.6
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|++|+|||||+++|.... .+.. | ..+.|.+.....+.+.
T Consensus 189 ~~~Val---vG~~NvGKSSLln~L~~~~-~~v~---------~------~~~tT~d~~~~~i~~~--------------- 234 (351)
T TIGR03156 189 VPTVAL---VGYTNAGKSTLFNALTGAD-VYAA---------D------QLFATLDPTTRRLDLP--------------- 234 (351)
T ss_pred CcEEEE---ECCCCCCHHHHHHHHhCCc-eeec---------c------CCccccCCEEEEEEeC---------------
Confidence 378999 9999999999999995322 1111 1 1234555544555553
Q ss_pred CceEEEEEcCCCcc-c--------hHHHHHHhhhccCceEEEEeCCCCcchhHH----HHHHHHHhcCCccEEEEecCcc
Q 003804 88 NEYLINLIDSPGHV-D--------FSSEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~-d--------f~~e~~~~l~~~D~ailvvda~~gv~~qt~----~~~~~~~~~~~~~iv~iNKiD~ 154 (794)
++..+.|+||||.. + |. .+...++.+|++++|+|+.+....... .+++.+...+.|+++|+||+|+
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~-~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl 313 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFR-ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDL 313 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHH-HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecC
Confidence 25689999999972 2 22 233457889999999999977544332 2333333346799999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 314 ~ 314 (351)
T TIGR03156 314 L 314 (351)
T ss_pred C
Confidence 6
No 221
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.10 E-value=5.1e-10 Score=111.98 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=76.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|..++|||||+.++.. |... +. ..|+......+.+
T Consensus 16 ~~~kv~l---vG~~~vGKTsli~~~~~--~~~~----------~~-------~~T~~~~~~~~~~--------------- 58 (182)
T PTZ00133 16 KEVRILM---VGLDAAGKTTILYKLKL--GEVV----------TT-------IPTIGFNVETVEY--------------- 58 (182)
T ss_pred CccEEEE---EcCCCCCHHHHHHHHhc--CCcc----------cc-------CCccccceEEEEE---------------
Confidence 4689999 99999999999999931 2110 00 0122222222333
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcch-hHHHHHHHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~-qt~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
.+..+++|||||+..|.......++.+|++|+|+|+.+--.. .....|..... .+.|.++++||.|+.
T Consensus 59 -~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 59 -KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred -CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 368999999999999988888899999999999999753211 12223333322 356888999999986
No 222
>PLN03110 Rab GTPase; Provisional
Probab=99.09 E-value=5.6e-10 Score=114.87 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=79.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+.+|+...-.. + ...|+.......... .+
T Consensus 11 ~~~Ki~i---vG~~~vGKStLi~~l~~~~~~~-----------~-------~~~t~g~~~~~~~v~------------~~ 57 (216)
T PLN03110 11 YLFKIVL---IGDSGVGKSNILSRFTRNEFCL-----------E-------SKSTIGVEFATRTLQ------------VE 57 (216)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHhcCCCCC-----------C-------CCCceeEEEEEEEEE------------EC
Confidence 3579999 9999999999999995321100 0 011222222111111 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....++||||||+..|.......++.+|++|+|+|..+....+...-| ..+.. .++|.+++.||+|+.
T Consensus 58 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 58 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 2457899999999999999888999999999999999876555444444 23322 468899999999985
No 223
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.09 E-value=1.1e-09 Score=110.65 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=74.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
...+|++ +|+.|+|||||+++|+.... +.. +.. ..|.|..... +.
T Consensus 23 ~~~~v~i---vG~~~~GKSsli~~l~~~~~-~~~-------~~~------~~~~t~~~~~----~~-------------- 67 (196)
T PRK00454 23 DGPEIAF---AGRSNVGKSSLINALTNRKN-LAR-------TSK------TPGRTQLINF----FE-------------- 67 (196)
T ss_pred CCCEEEE---EcCCCCCHHHHHHHHhCCCC-ccc-------ccC------CCCceeEEEE----Ee--------------
Confidence 4578999 99999999999999964211 000 000 1122222111 11
Q ss_pred CCceEEEEEcCCCcc----------chHHHHHHhhh---ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCc
Q 003804 87 GNEYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 87 ~~~~~inlIDTPGh~----------df~~e~~~~l~---~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD 153 (794)
.+..+.||||||+. .|...+...++ .++++++|+|+..+.......+++.+...++|.++++||+|
T Consensus 68 -~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~D 146 (196)
T PRK00454 68 -VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKAD 146 (196)
T ss_pred -cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 13679999999963 23333333444 44678899999888777766677777778899999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 147 l~ 148 (196)
T PRK00454 147 KL 148 (196)
T ss_pred cC
Confidence 86
No 224
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.08 E-value=6.4e-10 Score=114.45 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=77.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..++|||||+.+++... ... ...|+........+.
T Consensus 1 ~KIvi---vG~~~vGKTSLi~r~~~~~--f~~-----------------~~~Tig~~~~~~~~~---------------- 42 (220)
T cd04126 1 LKVVL---LGDMNVGKTSLLHRYMERR--FKD-----------------TVSTVGGAFYLKQWG---------------- 42 (220)
T ss_pred CEEEE---ECCCCCcHHHHHHHHhcCC--CCC-----------------CCCccceEEEEEEee----------------
Confidence 47888 9999999999999995311 100 012333222222332
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHH-HHHHHh---cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~-~~~~~~---~~~~~iv~iNKiD~~ 155 (794)
.+.++||||||+..|.......++.+|++|+|+|..+....+.... |..+.. .++|.|+|.||+|+.
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 43 PYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 6789999999999999888889999999999999997655444432 333322 357889999999986
No 225
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.08 E-value=3.6e-10 Score=107.08 Aligned_cols=109 Identities=24% Similarity=0.239 Sum_probs=77.3
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEEEc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlID 96 (794)
+|+.|+|||||+++|........ .+..|. .......+. ....+..++++|
T Consensus 2 iG~~~~GKStl~~~l~~~~~~~~-----------------~~~~t~-~~~~~~~~~------------~~~~~~~~~l~D 51 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFVPE-----------------EYETTI-IDFYSKTIE------------VDGKKVKLQIWD 51 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcCCc-----------------ccccch-hheeeEEEE------------ECCEEEEEEEEe
Confidence 79999999999999954332100 111122 222222222 112367899999
Q ss_pred CCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-----HHHHhcCCccEEEEecCccc
Q 003804 97 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 97 TPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-----~~~~~~~~~~iv~iNKiD~~ 155 (794)
|||+.++.......++.+|++++|+|+..+........| ......++|.++++||+|+.
T Consensus 52 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 52 TAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred cCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 999999888888899999999999999988766655544 33345678999999999987
No 226
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.08 E-value=4.3e-10 Score=109.04 Aligned_cols=112 Identities=23% Similarity=0.295 Sum_probs=74.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|+.|+|||||+++|+... ... ...+. +-......+.+ ++..
T Consensus 1 ki~i---~G~~~~GKTsli~~l~~~~--~~~---------~~~~~------~~~~~~~~~~~--------------~~~~ 46 (160)
T cd00876 1 KVVV---LGAGGVGKSAITIQFVKGT--FVE---------EYDPT------IEDSYRKTIVV--------------DGET 46 (160)
T ss_pred CEEE---ECCCCCCHHHHHHHHHhCC--CCc---------CcCCC------hhHeEEEEEEE--------------CCEE
Confidence 4778 9999999999999996432 111 00010 00111111222 1235
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh-HHHHHHHHHh----cCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q-t~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+.+++|||||+.++.......++.+|++++|+|........ ....|..+.. .++|.++++||+|+.
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 78999999999999988899999999999999998653322 2333333332 367899999999987
No 227
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.08 E-value=2.3e-10 Score=113.09 Aligned_cols=112 Identities=19% Similarity=0.260 Sum_probs=75.4
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|+.++|||||+.+++... ...... .|+... ...+.+ ++
T Consensus 1 ~ki~i---~G~~~~GKTsl~~~~~~~~--~~~~~~----------------~t~~~~~~~~~~~--------------~~ 45 (174)
T cd04135 1 LKCVV---VGDGAVGKTCLLMSYANDA--FPEEYV----------------PTVFDHYAVSVTV--------------GG 45 (174)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CCCCCC----------------CceeeeeEEEEEE--------------CC
Confidence 47888 9999999999999995422 111000 011100 011111 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHH-HHH--hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLR-QAL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~-~~~--~~~~~~iv~iNKiD~~ 155 (794)
..+.+++|||||+.+|.......++.+|++|+|+|..+.-..+... .|. .+. ..++|+++++||+|+.
T Consensus 46 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 46 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 3577899999999999887778889999999999998765544332 232 222 3578999999999986
No 228
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.07 E-value=4.7e-10 Score=110.76 Aligned_cols=108 Identities=23% Similarity=0.213 Sum_probs=68.2
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEEEc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlID 96 (794)
+|+.|+|||||+++|....-.+.. ..+.|+......+.+. .++.+++||
T Consensus 2 iG~~~~GKStll~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~---------------~~~~~~i~D 50 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKVAN----------------YPFTTLEPNLGVVEVP---------------DGARIQVAD 50 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccccC----------------CCceeecCcceEEEcC---------------CCCeEEEEe
Confidence 899999999999999532110100 1223333333333332 167899999
Q ss_pred CCCccc-------hHHHHHHhhhccCceEEEEeCCCCc------chhHHHHH-HHHH----------hcCCccEEEEecC
Q 003804 97 SPGHVD-------FSSEVTAALRITDGALVVVDCIEGV------CVQTETVL-RQAL----------GERIRPVLTVNKM 152 (794)
Q Consensus 97 TPGh~d-------f~~e~~~~l~~~D~ailvvda~~gv------~~qt~~~~-~~~~----------~~~~~~iv~iNKi 152 (794)
|||+.+ +.......++.+|++++|+|+.... .......| ..+. ..++|.++++||+
T Consensus 51 tpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~ 130 (176)
T cd01881 51 IPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKI 130 (176)
T ss_pred ccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEch
Confidence 999843 2224456778899999999998763 22222222 2222 1367999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 131 Dl~ 133 (176)
T cd01881 131 DLD 133 (176)
T ss_pred hcC
Confidence 987
No 229
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.07 E-value=5.2e-10 Score=111.17 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=78.0
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceE-EEEeecchhhhhccccccC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (794)
+++|++ +|..|+|||||+.++++ |.... ....|+..... .+.+ +
T Consensus 1 ~~ki~v---vG~~~vGKTsl~~~~~~--~~f~~----------------~~~pt~~~~~~~~~~~--------------~ 45 (175)
T cd01874 1 TIKCVV---VGDGAVGKTCLLISYTT--NKFPS----------------EYVPTVFDNYAVTVMI--------------G 45 (175)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHc--CCCCC----------------CCCCceeeeeEEEEEE--------------C
Confidence 478999 99999999999999953 21111 01112221111 1222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHH-HHH--hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLR-QAL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~-~~~--~~~~~~iv~iNKiD~~ 155 (794)
+..+.++||||||+.+|.......++.+|++|+|+|..+....+... .|. .+. ..++|++++.||+|+.
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 46 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred CEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 24578999999999999877777899999999999998876555442 353 222 2367899999999986
No 230
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.07 E-value=5.5e-10 Score=112.63 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=75.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..++|||||+++|+...-.. + +...|+........+. .++.
T Consensus 1 ~ki~v---vG~~~vGKSsLi~~~~~~~~~~-----~------------~~~~t~~~~~~~~~~~------------~~~~ 48 (193)
T cd04118 1 VKVVM---LGKESVGKTSLVERYVHHRFLV-----G------------PYQNTIGAAFVAKRMV------------VGER 48 (193)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCcCC-----c------------CcccceeeEEEEEEEE------------ECCE
Confidence 37888 9999999999999996421110 0 0011222221111111 1234
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh--cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
...+++|||||..+|.......++.+|++|+|+|..+....+....| ..+.. .+.|.++|+||+|+.
T Consensus 49 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 49 VVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 57788999999988877777788899999999999876544433333 33332 367899999999985
No 231
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.07 E-value=7.7e-10 Score=111.29 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=80.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|..++|||||+.++.. +.... +....++.......+.. +
T Consensus 5 ~~~Kivv---iG~~~vGKTsll~~~~~--~~~~~--------------~~~~t~~~~~~~~~i~~--------------~ 51 (189)
T cd04121 5 YLLKFLL---VGDSDVGKGEILASLQD--GSTES--------------PYGYNMGIDYKTTTILL--------------D 51 (189)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHc--CCCCC--------------CCCCcceeEEEEEEEEE--------------C
Confidence 3589999 99999999999999953 21111 00011112111122222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh--cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
+..+.++||||||+.+|.......++.+|++|+|+|.+..-+.+...-| .++.. .+.|+||+.||+|+.
T Consensus 52 ~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 52 GRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 2458899999999999998888888999999999999987655554444 33322 467899999999986
No 232
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.06 E-value=1e-09 Score=110.03 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=76.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceE-EEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+++|+... ... .+..|+..... .+... ++
T Consensus 1 ~ki~v---vG~~~vGKTsli~~l~~~~--~~~----------------~~~~t~~~~~~~~i~~~-------------~~ 46 (187)
T cd04132 1 KKIVV---VGDGGCGKTCLLIVYSQGK--FPE----------------EYVPTVFENYVTNIQGP-------------NG 46 (187)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHhCc--CCC----------------CCCCeeeeeeEEEEEec-------------CC
Confidence 47888 9999999999999995321 110 00012211111 11110 12
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHH---hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~---~~~~~~iv~iNKiD~~ 155 (794)
....+.||||||+.+|.......++.+|++|+|+|..+....+... .|.... ..++|.++++||.|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 47 KIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred cEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 4568999999999999887778889999999999999765554432 343222 2467999999999986
No 233
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.06 E-value=5.3e-10 Score=115.01 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=75.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc--eEEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++|++ +|..++|||||+++|+... ... ....|+... ...+.+. +
T Consensus 1 ~Ki~i---vG~~~vGKSsLi~~l~~~~--~~~----------------~~~~T~~~d~~~~~i~~~-------------~ 46 (215)
T cd04109 1 FKIVV---LGDGAVGKTSLCRRFAKEG--FGK----------------SYKQTIGLDFFSKRVTLP-------------G 46 (215)
T ss_pred CEEEE---ECcCCCCHHHHHHHHhcCC--CCC----------------CCCCceeEEEEEEEEEeC-------------C
Confidence 47888 9999999999999995311 100 001122221 1122221 1
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh------cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~------~~~~~iv~iNKiD~~ 155 (794)
.....++||||||+..|.......++.+|++|+|+|+.+.-..+...-| ..+.. .+.|.++|.||+|+.
T Consensus 47 ~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 47 NLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred CCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 1357899999999998888888889999999999999876444433334 22222 234677899999986
No 234
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.06 E-value=1.1e-09 Score=107.83 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=74.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
-.|.+ +|+.|+|||+|...|.+. .. ..+ + .++ ...+.+.+ ...+
T Consensus 4 ~~vlL---~Gps~SGKTaLf~~L~~~--~~----~~T--~-----------tS~-e~n~~~~~-------------~~~~ 47 (181)
T PF09439_consen 4 PTVLL---VGPSGSGKTALFSQLVNG--KT----VPT--V-----------TSM-ENNIAYNV-------------NNSK 47 (181)
T ss_dssp -EEEE---E-STTSSHHHHHHHHHHS--S-------B----------------S-SEEEECCG-------------SSTC
T ss_pred ceEEE---EcCCCCCHHHHHHHHhcC--Cc----CCe--e-----------ccc-cCCceEEe-------------ecCC
Confidence 35666 999999999999999653 11 110 0 112 11111111 1223
Q ss_pred ceEEEEEcCCCccchHHHHHHh---hhccCceEEEEeCCCCcchh---HHHHH----HHHH--hcCCccEEEEecCccch
Q 003804 89 EYLINLIDSPGHVDFSSEVTAA---LRITDGALVVVDCIEGVCVQ---TETVL----RQAL--GERIRPVLTVNKMDRCF 156 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~---l~~~D~ailvvda~~gv~~q---t~~~~----~~~~--~~~~~~iv~iNKiD~~~ 156 (794)
+..+.+||+|||..+....... +..+-++|+|||++. ...+ +.+.+ .... ..++|++|+.||.|+.
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~- 125 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF- 125 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST-
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc-
Confidence 5678999999999998887776 889999999999974 2211 11222 1112 3566778999999998
Q ss_pred hccCC-CHHHHHHHHHHHHHHhh
Q 003804 157 LELQV-DGEEAYQTFQKVIENAN 178 (794)
Q Consensus 157 ~~~~~-~~~~~~~~~~~~~~~~~ 178 (794)
.+ ++..+...+++-++.++
T Consensus 126 ---~A~~~~~Ik~~LE~Ei~~lr 145 (181)
T PF09439_consen 126 ---TAKPPKKIKKLLEKEIDKLR 145 (181)
T ss_dssp ---T---HHHHHHHHHHHHHHHH
T ss_pred ---ccCCHHHHHHHHHHHHHHHH
Confidence 55 34555555665555543
No 235
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.05 E-value=1.6e-09 Score=120.53 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=74.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.|+| +|.+++|||||+++|....-.+ .++ .+.|.......+.+. +.
T Consensus 161 dVal---VG~PNaGKSTLln~Lt~~k~~v----------s~~------p~TT~~p~~Giv~~~---------------~~ 206 (390)
T PRK12298 161 DVGL---LGLPNAGKSTFIRAVSAAKPKV----------ADY------PFTTLVPNLGVVRVD---------------DE 206 (390)
T ss_pred cEEE---EcCCCCCHHHHHHHHhCCcccc----------cCC------CCCccCcEEEEEEeC---------------CC
Confidence 6788 9999999999999995322111 111 123444444444443 24
Q ss_pred eEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCC----CcchhHHHHHHHHHh-----cCCccEEEEecCc
Q 003804 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE----GVCVQTETVLRQALG-----ERIRPVLTVNKMD 153 (794)
Q Consensus 90 ~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~----gv~~qt~~~~~~~~~-----~~~~~iv~iNKiD 153 (794)
..|.|+||||..+ +...+.+.+..+|++++|||+.. ....+...+.+++.. .+.|.++++||+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 5699999999754 44556778899999999999872 122222334444444 2579999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 287 l~ 288 (390)
T PRK12298 287 LL 288 (390)
T ss_pred cC
Confidence 86
No 236
>PLN03108 Rab family protein; Provisional
Probab=99.05 E-value=1.5e-09 Score=111.25 Aligned_cols=114 Identities=19% Similarity=0.129 Sum_probs=78.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce--EEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~ 84 (794)
.+++|++ +|+.++|||||+++|+...-.... -.|+.... ..+.+
T Consensus 5 ~~~kivi---vG~~gvGKStLi~~l~~~~~~~~~------------------~~ti~~~~~~~~i~~------------- 50 (210)
T PLN03108 5 YLFKYII---IGDTGVGKSCLLLQFTDKRFQPVH------------------DLTIGVEFGARMITI------------- 50 (210)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHHhCCCCCCC------------------CCCccceEEEEEEEE-------------
Confidence 4589999 999999999999999532110000 01222111 11222
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HH---hcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~---~~~~~~iv~iNKiD~~ 155 (794)
++....+++|||||+.+|.......++.+|++|+|+|++.....+...-|.. +. ..++|++++.||+|+.
T Consensus 51 -~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 51 -DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred -CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 2235678999999999998888889999999999999987654444333422 22 2367889999999986
No 237
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.04 E-value=1.9e-09 Score=107.92 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=74.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..++|||||+.+++... ... +.-.|+.......... .++.
T Consensus 1 ~Ki~v---lG~~~vGKTsLi~~~~~~~--f~~----------------~~~~T~g~~~~~~~i~------------~~~~ 47 (182)
T cd04128 1 LKIGL---LGDAQIGKTSLMVKYVEGE--FDE----------------DYIQTLGVNFMEKTIS------------IRGT 47 (182)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CCC----------------CCCCccceEEEEEEEE------------ECCE
Confidence 47888 9999999999999995321 100 0111332221111111 1223
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh--cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
...+.+|||+|+..|.......++.+|++++|+|.++-...+...-| .++.. ...++|+++||+|+.
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~ 117 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 57899999999999998888899999999999999876554443333 33322 222347899999985
No 238
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.04 E-value=3.1e-09 Score=115.99 Aligned_cols=112 Identities=22% Similarity=0.165 Sum_probs=75.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.|++ +|.++||||||+++|....-.+ .++ .+.|+....-.+.+. ++
T Consensus 160 dVgl---VG~PNaGKSTLln~ls~a~~~v----------a~y------pfTT~~p~~G~v~~~---------------~~ 205 (335)
T PRK12299 160 DVGL---VGLPNAGKSTLISAVSAAKPKI----------ADY------PFTTLHPNLGVVRVD---------------DY 205 (335)
T ss_pred CEEE---EcCCCCCHHHHHHHHHcCCCcc----------CCC------CCceeCceEEEEEeC---------------CC
Confidence 6778 9999999999999994321111 111 123555555555553 25
Q ss_pred eEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh-----cCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~-----~~~~~iv~iNKiD~~ 155 (794)
..|.++||||..+ +.....+.+..+|++|+|||+.+....+....| ..+.. .++|.++|+||+|+.
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 6799999999753 444566677789999999999864334443444 33332 367899999999986
No 239
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.04 E-value=1.4e-09 Score=110.23 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=79.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|++|+|||||+|+|+......... ..++.|.........|.
T Consensus 1 ~~i~l---vG~~g~GKSsl~N~ilg~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------------- 47 (196)
T cd01852 1 LRLVL---VGKTGAGKSATGNTILGREVFESKL--------------SASSVTKTCQKESAVWD---------------- 47 (196)
T ss_pred CEEEE---ECCCCCCHHHHHHHhhCCCcccccc--------------CCCCcccccceeeEEEC----------------
Confidence 36888 9999999999999997544332210 12345655555555553
Q ss_pred ceEEEEEcCCCccchH-------HHHHHh----hhccCceEEEEeCCCCcchhHHHHHHHHHhc-C----CccEEEEecC
Q 003804 89 EYLINLIDSPGHVDFS-------SEVTAA----LRITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNKM 152 (794)
Q Consensus 89 ~~~inlIDTPGh~df~-------~e~~~~----l~~~D~ailvvda~~gv~~qt~~~~~~~~~~-~----~~~iv~iNKi 152 (794)
+..+++|||||..++. .++.+. ...+|++|+|+|+.. .....+.+++.+.+. + .+.++++|+.
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 7899999999987652 233333 345799999999987 777777777776543 2 4678999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|..
T Consensus 127 d~l 129 (196)
T cd01852 127 DDL 129 (196)
T ss_pred ccc
Confidence 987
No 240
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.03 E-value=4.8e-10 Score=110.22 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=73.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..|+|||||+++|+...- ...... .........+.+ .+.
T Consensus 1 iki~i---~G~~~~GKSsli~~l~~~~~--~~~~~~---------------~~~~~~~~~~~~--------------~~~ 46 (171)
T cd00157 1 IKIVV---VGDGAVGKTCLLISYTTGKF--PTEYVP---------------TVFDNYSATVTV--------------DGK 46 (171)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCC--CCCCCC---------------ceeeeeEEEEEE--------------CCE
Confidence 47888 99999999999999954221 000000 000011111111 224
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHH-HHH--hcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~-~~~--~~~~~~iv~iNKiD~~ 155 (794)
.+.+.+|||||+.+|.......++.+|++++|+|+.+....+.. ..|. ... ..++|+++++||+|+.
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 67899999999998876666777899999999999875443332 2232 222 2358999999999987
No 241
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.02 E-value=2e-09 Score=107.29 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=77.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..++|||||+.+++... ... + .-.|+.... ..+.. ++
T Consensus 2 ~Kiv~---vG~~~vGKTsli~~~~~~~--f~~---------~-------~~~t~~~~~~~~~~~--------------~~ 46 (178)
T cd04131 2 CKIVV---VGDVQCGKTALLQVFAKDC--YPE---------T-------YVPTVFENYTASFEI--------------DE 46 (178)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCc--CCC---------C-------cCCceEEEEEEEEEE--------------CC
Confidence 68999 9999999999999995321 100 0 011221111 01111 23
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHH-HHh--cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQ-ALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~-~~~--~~~~~iv~iNKiD~~ 155 (794)
+...++||||||+..|.......++.+|++|+|+|.++..+.+. ..-|.. +.. .+.|.++|.||.|+.
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 47 QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 46789999999999998877888999999999999987766555 244532 222 367889999999985
No 242
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.02 E-value=1.4e-09 Score=109.63 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=79.8
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
+++|++ +|..++|||||+.++++ |.... +...|+.... ...+. .++
T Consensus 3 ~~ki~~---vG~~~vGKTsli~~~~~--~~f~~----------------~~~~t~~~~~-~~~~~------------~~~ 48 (191)
T cd01875 3 SIKCVV---VGDGAVGKTCLLICYTT--NAFPK----------------EYIPTVFDNY-SAQTA------------VDG 48 (191)
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHh--CCCCc----------------CCCCceEeee-EEEEE------------ECC
Confidence 478999 99999999999999953 21110 0112332211 11111 233
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHH-HH--hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-AL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~-~~--~~~~~~iv~iNKiD~~ 155 (794)
+.+.++||||||+..|.......++.+|++|+|+|..+-...+... .|.. +. ..++|++++.||.|+.
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 4688999999999999988888899999999999998766555543 3533 22 2467999999999986
No 243
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.02 E-value=1.9e-09 Score=106.38 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=77.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcc-cccCCceeecCChhhHhhhCcccccce--EEEEeecchhhhhccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYR 82 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~-~~~~G~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~ 82 (794)
.++++|++ +|..|+|||||+.+++. +... . ++ -.|+.... ..+.+
T Consensus 2 ~~~~kv~~---vG~~~vGKTsli~~~~~--~~f~~~---------~~-------~~T~~~~~~~~~~~~----------- 49 (169)
T cd01892 2 RNVFLCFV---LGAKGSGKSALLRAFLG--RSFSLN---------AY-------SPTIKPRYAVNTVEV----------- 49 (169)
T ss_pred CeEEEEEE---ECCCCCcHHHHHHHHhC--CCCCcc---------cC-------CCccCcceEEEEEEE-----------
Confidence 46789999 99999999999999952 2111 0 00 11222211 11222
Q ss_pred cccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHH-hcCCccEEEEecCccc
Q 003804 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-GERIRPVLTVNKMDRC 155 (794)
Q Consensus 83 ~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~-~~~~~~iv~iNKiD~~ 155 (794)
++....+.++||+|...|.......++.+|++|+|+|+.+.-..+.. ..++... ..++|.++++||+|+.
T Consensus 50 ---~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 50 ---YGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred ---CCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 12346789999999998887777788999999999999875333322 2233332 2368999999999985
No 244
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.02 E-value=1.1e-09 Score=108.83 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=79.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..++|||+|+.+++. |.... +.-.|+.... ..... .+++
T Consensus 2 ~kivv---~G~~~vGKTsli~~~~~--~~f~~----------------~~~~Ti~~~~-~~~~~------------~~~~ 47 (176)
T cd04133 2 IKCVT---VGDGAVGKTCMLICYTS--NKFPT----------------DYIPTVFDNF-SANVS------------VDGN 47 (176)
T ss_pred eEEEE---ECCCCCcHHHHHHHHhc--CCCCC----------------CCCCcceeee-EEEEE------------ECCE
Confidence 57888 99999999999999952 21111 1112332211 11111 1234
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHH-HHHH--hcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~-~~~~--~~~~~~iv~iNKiD~~ 155 (794)
..+++||||+|+.+|.......++.+|++|+|+|.++-...+.. ..| +.+. ..++|.++|.||+|+.
T Consensus 48 ~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 48 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 68899999999999998888899999999999999977665553 334 3332 2467899999999985
No 245
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.01 E-value=3e-09 Score=106.44 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=79.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|..++|||||+.+++... ... +...|+..... .... .+
T Consensus 4 ~~~Kivv---vGd~~vGKTsli~~~~~~~--f~~----------------~~~pT~~~~~~-~~~~------------~~ 49 (182)
T cd04172 4 VKCKIVV---VGDSQCGKTALLHVFAKDC--FPE----------------NYVPTVFENYT-ASFE------------ID 49 (182)
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHHhCC--CCC----------------ccCCceeeeeE-EEEE------------EC
Confidence 4678999 9999999999999995321 110 11122221111 1111 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHH-HHHh--cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~-~~~~--~~~~~iv~iNKiD~~ 155 (794)
++...+.||||+|...|.......++.+|++|+|+|.++..+.+.. ..|. .+.. .+.|.++|.||.|+.
T Consensus 50 ~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 50 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred CEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 3467899999999999988888889999999999999887666553 4453 2222 357889999999975
No 246
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.01 E-value=1.9e-09 Score=110.84 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=82.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|+.|+|||||+.+++. |.... ++..|+........+. .
T Consensus 7 ~~~~kv~l---iG~~g~GKTtLi~~~~~--~~~~~----------------~~~~t~~~~~~~~~~~------------~ 53 (215)
T PTZ00132 7 VPEFKLIL---VGDGGVGKTTFVKRHLT--GEFEK----------------KYIPTLGVEVHPLKFY------------T 53 (215)
T ss_pred CCCceEEE---ECCCCCCHHHHHHHHHh--CCCCC----------------CCCCccceEEEEEEEE------------E
Confidence 34689999 99999999999988753 22211 1112333333233332 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH---hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~---~~~~~~iv~iNKiD~~ 155 (794)
++....+++|||||+.+|.......++.+|++++|+|..+....++...|..-. ..++|.+++.||+|+.
T Consensus 54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 234689999999999999877777888999999999999887776655553221 2467888999999985
No 247
>PRK11058 GTPase HflX; Provisional
Probab=99.00 E-value=1.3e-09 Score=122.52 Aligned_cols=112 Identities=27% Similarity=0.218 Sum_probs=75.4
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
..|++ +|.+|+|||||+++|....-.. .| ..+.|++.....+.+. .
T Consensus 198 p~Val---VG~~NaGKSSLlN~Lt~~~~~v----------~~------~~~tTld~~~~~i~l~---------------~ 243 (426)
T PRK11058 198 PTVSL---VGYTNAGKSTLFNRITEARVYA----------AD------QLFATLDPTLRRIDVA---------------D 243 (426)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCceee----------cc------CCCCCcCCceEEEEeC---------------C
Confidence 47888 9999999999999994221111 11 1234555555555553 1
Q ss_pred ceEEEEEcCCCccc---------hHHHHHHhhhccCceEEEEeCCCCcchhHH----HHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~d---------f~~e~~~~l~~~D~ailvvda~~gv~~qt~----~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
...+.|+||||... |. .+...++.+|++|+|+|+++....... .++..+...++|+++|+||+|+.
T Consensus 244 ~~~~~l~DTaG~~r~lp~~lve~f~-~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 244 VGETVLADTVGFIRHLPHDLVAAFK-ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CCeEEEEecCcccccCCHHHHHHHH-HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 34789999999843 32 234556889999999999986543332 23344444578999999999986
No 248
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.00 E-value=1.9e-09 Score=111.11 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=78.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..++|||||+.+++... ... +.-.|+.... ..+.. ++
T Consensus 2 ~KIvv---vGd~~vGKTsLi~~~~~~~--f~~----------------~y~pTi~~~~~~~~~~--------------~~ 46 (222)
T cd04173 2 CKIVV---VGDAECGKTALLQVFAKDA--YPG----------------SYVPTVFENYTASFEI--------------DK 46 (222)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHcCC--CCC----------------ccCCccccceEEEEEE--------------CC
Confidence 68899 9999999999999995311 100 0111222111 11222 23
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHH---hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~---~~~~~~iv~iNKiD~~ 155 (794)
+.+.++||||+|+..|.......++.+|++|+|+|..+.-..+.. ..|.... ..+.|+|+|.||+|+.
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 467899999999999998888899999999999999987555443 3454322 2467999999999985
No 249
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.00 E-value=4.4e-09 Score=112.05 Aligned_cols=124 Identities=19% Similarity=0.266 Sum_probs=77.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|+...-.... +. .+....+..+.+++......+.. ++
T Consensus 4 ~f~I~v---vG~sg~GKSTliN~L~~~~~~~~~---~~---~~~~~~~~~~T~~i~~~~~~i~~--------------~g 60 (276)
T cd01850 4 QFNIMV---VGESGLGKSTFINTLFNTKLIPSD---YP---PDPAEEHIDKTVEIKSSKAEIEE--------------NG 60 (276)
T ss_pred EEEEEE---EcCCCCCHHHHHHHHHcCCCcccc---CC---CCccccccCCceEEEEEEEEEEE--------------CC
Confidence 578999 999999999999999543211111 10 00001111222222222222222 12
Q ss_pred CceEEEEEcCCCccchHH---------------------HHHHhhh-------ccCceEEEEeCC-CCcchhHHHHHHHH
Q 003804 88 NEYLINLIDSPGHVDFSS---------------------EVTAALR-------ITDGALVVVDCI-EGVCVQTETVLRQA 138 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~---------------------e~~~~l~-------~~D~ailvvda~-~gv~~qt~~~~~~~ 138 (794)
...++++|||||..|+.. +.....| .+|++++++++. .++......+++.+
T Consensus 61 ~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l 140 (276)
T cd01850 61 VKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL 140 (276)
T ss_pred EEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 346899999999876532 1111122 478899999987 47777777888887
Q ss_pred HhcCCccEEEEecCccc
Q 003804 139 LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 139 ~~~~~~~iv~iNKiD~~ 155 (794)
.. ++|.++|+||+|+.
T Consensus 141 ~~-~v~vi~VinK~D~l 156 (276)
T cd01850 141 SK-RVNIIPVIAKADTL 156 (276)
T ss_pred hc-cCCEEEEEECCCcC
Confidence 64 78999999999986
No 250
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.00 E-value=2.1e-09 Score=106.72 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=76.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..++|||||+.+++. |.... +...|+.... ..+.. ++
T Consensus 2 ~ki~i---iG~~~vGKSsli~~~~~--~~f~~----------------~~~~t~~~~~~~~~~~--------------~~ 46 (174)
T cd01871 2 IKCVV---VGDGAVGKTCLLISYTT--NAFPG----------------EYIPTVFDNYSANVMV--------------DG 46 (174)
T ss_pred eEEEE---ECCCCCCHHHHHHHHhc--CCCCC----------------cCCCcceeeeEEEEEE--------------CC
Confidence 68888 99999999999999953 21111 0111221110 11111 23
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHH-HH--hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-AL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~-~~--~~~~~~iv~iNKiD~~ 155 (794)
+...++||||||+.+|.......++.+|++|+|+|.++.-+.+.. ..|.. +. ..++|.+++.||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 47 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred EEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 457899999999999988778889999999999999976555543 23432 22 2357999999999986
No 251
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.00 E-value=1.3e-09 Score=109.38 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=75.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc--eEEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++|++ +|..|+|||||+++++. +.... .+ -.|+... ...+.. +
T Consensus 1 ~ki~v---~G~~~vGKSsli~~~~~--~~~~~---------~~-------~~t~~~~~~~~~~~~--------------~ 45 (188)
T cd04125 1 FKVVI---IGDYGVGKSSLLKRFTE--DEFSE---------ST-------KSTIGVDFKIKTVYI--------------E 45 (188)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhc--CCCCC---------CC-------CCceeeEEEEEEEEE--------------C
Confidence 47888 99999999999999952 11110 00 0111111 111222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHH---hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~---~~~~~~iv~iNKiD~~ 155 (794)
+..+.+.+|||||+.+|.......++.+|++|+|+|+.+.-.......|. .+. ..+.|.++++||.|+.
T Consensus 46 ~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 46 NKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred CEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 23578899999999999988999999999999999998765444433342 222 2346888999999986
No 252
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.00 E-value=2e-09 Score=110.43 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=75.5
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce--EEEEeecchhhhhcccccc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~ 85 (794)
.++|++ +|..++|||||+++|+... ... . ...|+.... ..+.+.
T Consensus 2 ~~KIvv---vG~~~vGKTsLi~~l~~~~--~~~--~--------------~~~ti~~d~~~~~i~~~------------- 47 (211)
T cd04111 2 QFRLIV---IGDSTVGKSSLLKRFTEGR--FAE--V--------------SDPTVGVDFFSRLIEIE------------- 47 (211)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHcCC--CCC--C--------------CCceeceEEEEEEEEEC-------------
Confidence 478999 9999999999999996321 111 0 001222111 112221
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++....+++|||||+..|.......++.+|++|+|+|..+........-| ..+.. ...|.+++.||.|+.
T Consensus 48 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 48 PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 22357899999999999988888889999999999999875433332223 32322 234567899999986
No 253
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.99 E-value=1.5e-09 Score=113.76 Aligned_cols=112 Identities=18% Similarity=0.241 Sum_probs=75.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc-cceEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+++++. |.... +.-.|+. .....+.. ++
T Consensus 1 ~KVvv---lG~~gvGKTSLi~r~~~--~~f~~----------------~y~pTi~d~~~k~~~i--------------~~ 45 (247)
T cd04143 1 YRMVV---LGASKVGKTAIVSRFLG--GRFEE----------------QYTPTIEDFHRKLYSI--------------RG 45 (247)
T ss_pred CEEEE---ECcCCCCHHHHHHHHHc--CCCCC----------------CCCCChhHhEEEEEEE--------------CC
Confidence 36888 99999999999999963 11110 0011221 11111112 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHHh------------cCCccEEEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG------------ERIRPVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~~------------~~~~~iv~iNKiD~ 154 (794)
..+.++||||||+.+|.......++.+|++|+|+|..+....+... .+.++.. .++|+|+++||+|+
T Consensus 46 ~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl 125 (247)
T cd04143 46 EVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADR 125 (247)
T ss_pred EEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccc
Confidence 4578999999999999877777789999999999999765444333 2233322 35789999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 126 ~ 126 (247)
T cd04143 126 D 126 (247)
T ss_pred h
Confidence 6
No 254
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=5.8e-09 Score=95.89 Aligned_cols=121 Identities=21% Similarity=0.284 Sum_probs=88.0
Q ss_pred CCccceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 1 ~~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
|.-|.+- ++|++ +|..|+|||.|+.++ ..|..... .| .||.....--...
T Consensus 1 medykfl-fkivl---vgnagvgktclvrrf--tqglfppg-qg---------------atigvdfmiktve-------- 50 (213)
T KOG0095|consen 1 MEDYKFL-FKIVL---VGNAGVGKTCLVRRF--TQGLFPPG-QG---------------ATIGVDFMIKTVE-------- 50 (213)
T ss_pred Cccccee-EEEEE---EccCCcCcchhhhhh--hccCCCCC-CC---------------ceeeeeEEEEEEE--------
Confidence 4444433 78999 999999999999998 55554432 23 3444333222222
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH---hcCCccEEEEecCccc
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~---~~~~~~iv~iNKiD~~ 155 (794)
.++...++.||||+|+..|.+-+....|.+++.|||.|.+.........-| +.+. ..++--|+|.||+|+.
T Consensus 51 ----v~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 51 ----VNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred ----ECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 244578999999999999999999999999999999999987766665544 3433 3455678999999986
No 255
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.99 E-value=2.2e-09 Score=109.01 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=79.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce--EEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~ 86 (794)
++|++ +|..++|||||+.+++.. .... +...|+.... ..+.+.. ...+
T Consensus 1 vKIvl---vGd~gVGKTSLi~~~~~~--~f~~----------------~~~~Tig~~~~~k~~~~~~---------~~~~ 50 (202)
T cd04102 1 VRVLV---VGDSGVGKSSLVHLICKN--QVLG----------------RPSWTVGCSVDVKHHTYKE---------GTPE 50 (202)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcC--CCCC----------------CCCcceeeeEEEEEEEEcC---------CCCC
Confidence 47888 999999999999999521 1100 0112332211 1122210 0012
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHh----------------------cCC
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----------------------ERI 143 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~----------------------~~~ 143 (794)
++.+.++||||+|+.+|.......++.+|++|+|+|.+.....+...-|. .+.. .++
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI 130 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence 34678999999999999988888999999999999999886666555552 2221 357
Q ss_pred ccEEEEecCccc
Q 003804 144 RPVLTVNKMDRC 155 (794)
Q Consensus 144 ~~iv~iNKiD~~ 155 (794)
|++++.||+|+.
T Consensus 131 PiilVGnK~Dl~ 142 (202)
T cd04102 131 PLLVIGTKLDQI 142 (202)
T ss_pred eEEEEEECccch
Confidence 999999999985
No 256
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.98 E-value=5.5e-09 Score=108.25 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=79.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|..++|||+|+.+++. +.... +...|+..... .... .+
T Consensus 12 ~~~KIvv---vGd~~VGKTsLi~r~~~--~~F~~----------------~y~pTi~~~~~-~~i~------------~~ 57 (232)
T cd04174 12 MRCKLVL---VGDVQCGKTAMLQVLAK--DCYPE----------------TYVPTVFENYT-AGLE------------TE 57 (232)
T ss_pred eeEEEEE---ECCCCCcHHHHHHHHhc--CCCCC----------------CcCCceeeeeE-EEEE------------EC
Confidence 4679999 99999999999999852 11110 01112221111 1111 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHH-HHh--cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQ-ALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~-~~~--~~~~~iv~iNKiD~~ 155 (794)
+....++||||||..+|.......++.+|++|+|+|.+.....+. ...|.. +.. .+.|+|+|.||+|+.
T Consensus 58 ~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 58 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred CEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 346889999999999998888889999999999999997766554 244533 322 367889999999975
No 257
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.98 E-value=7.1e-10 Score=102.43 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=69.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|.+ +|+.|+|||||+++|+...... ....+...+.++......... ..
T Consensus 1 kI~V---~G~~g~GKTsLi~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~----------------~~ 49 (119)
T PF08477_consen 1 KIVV---LGDSGVGKTSLIRRLCGGEFPD------------NSVPEETSEITIGVDVIVVDG----------------DR 49 (119)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETT----------------EE
T ss_pred CEEE---ECcCCCCHHHHHHHHhcCCCcc------------cccccccCCCcEEEEEEEecC----------------Cc
Confidence 5778 9999999999999996433220 000011112222222222111 24
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHH---HHHH--hcCCccEEEEecCc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL---RQAL--GERIRPVLTVNKMD 153 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~---~~~~--~~~~~~iv~iNKiD 153 (794)
..+.++|++|+..|.......+..+|++++|+|..+.-..+- ..++ .... ..++|++++.||.|
T Consensus 50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred eEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 568999999998887765666999999999999997543322 2231 2222 24589999999998
No 258
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.97 E-value=8.8e-10 Score=102.72 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=84.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.++++|-+ +|..|+|||+|+-++.. ...+ ++.. .||....-.-... .
T Consensus 9 ~~t~KiLl---IGeSGVGKSSLllrFv~--~~fd--------------~~~~--~tIGvDFkvk~m~------------v 55 (209)
T KOG0080|consen 9 DTTFKILL---IGESGVGKSSLLLRFVS--NTFD--------------DLHP--TTIGVDFKVKVMQ------------V 55 (209)
T ss_pred ceeEEEEE---EccCCccHHHHHHHHHh--cccC--------------ccCC--ceeeeeEEEEEEE------------E
Confidence 57899999 99999999999988832 2111 1111 2232221111122 3
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH-----hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~-----~~~~~~iv~iNKiD~~ 155 (794)
+++..++.||||+|+..|..-+...+|.|-|+|+|.|.+...+.....+|-.-. ..++..++|.||+|+.
T Consensus 56 dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 56 DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred cCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 557899999999999999999999999999999999999776666667774332 2345567899999986
No 259
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.97 E-value=2.9e-09 Score=105.87 Aligned_cols=112 Identities=23% Similarity=0.265 Sum_probs=83.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+..+|++ +|..|||||||+.+|. .+.+.. ...|+......+.+.
T Consensus 12 ~~~~~ili---lGl~~sGKTtll~~l~--~~~~~~-----------------~~pT~g~~~~~i~~~------------- 56 (175)
T PF00025_consen 12 KKEIKILI---LGLDGSGKTTLLNRLK--NGEISE-----------------TIPTIGFNIEEIKYK------------- 56 (175)
T ss_dssp TSEEEEEE---EESTTSSHHHHHHHHH--SSSEEE-----------------EEEESSEEEEEEEET-------------
T ss_pred CcEEEEEE---ECCCccchHHHHHHhh--hccccc-----------------cCcccccccceeeeC-------------
Confidence 56789999 9999999999999993 222111 112455555555563
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcc-hhHHHHHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~-~qt~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++.++++|.+|+..|.......++.+|++|+|||+.+--. ...+..+..+.. .++|.++++||.|+.
T Consensus 57 ---~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 57 ---GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp ---TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred ---cEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccccc
Confidence 8899999999999888888888999999999999996432 333444444433 367888999999998
No 260
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.97 E-value=1.6e-09 Score=103.76 Aligned_cols=122 Identities=21% Similarity=0.185 Sum_probs=94.6
Q ss_pred CCccc-eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhh
Q 003804 1 MSSYC-FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (794)
Q Consensus 1 ~~~~~-~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 79 (794)
|++.. .+.++|.| +|.+|+|||+|.+++.+. ...++...||..-..+-++.
T Consensus 1 M~~~~K~~lLKVii---LGDsGVGKtSLmn~yv~~------------------kF~~qykaTIgadFltKev~------- 52 (210)
T KOG0394|consen 1 MSSLRKRTLLKVII---LGDSGVGKTSLMNQYVNK------------------KFSQQYKATIGADFLTKEVQ------- 52 (210)
T ss_pred CCCcCcccceEEEE---eCCCCccHHHHHHHHHHH------------------HHHHHhccccchhheeeEEE-------
Confidence 67655 45579999 999999999999999431 23345556777666665554
Q ss_pred ccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH--h------cCCccEEEEec
Q 003804 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL--G------ERIRPVLTVNK 151 (794)
Q Consensus 80 ~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~--~------~~~~~iv~iNK 151 (794)
.+++.+.+.||||+|+..|.+--...+|.+|.+++|.|...--...+...|+.-. . ..-|.||+.||
T Consensus 53 -----Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNK 127 (210)
T KOG0394|consen 53 -----VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNK 127 (210)
T ss_pred -----EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEccc
Confidence 3456788999999999999998888999999999999998877777777775321 1 23589999999
Q ss_pred Cccc
Q 003804 152 MDRC 155 (794)
Q Consensus 152 iD~~ 155 (794)
+|..
T Consensus 128 iD~~ 131 (210)
T KOG0394|consen 128 IDVD 131 (210)
T ss_pred ccCC
Confidence 9987
No 261
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.97 E-value=1.7e-09 Score=107.00 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=74.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCccc-ccceEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI-KSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
++|++ +|..|+|||||+.+++... .... +. .|+ +.-...+.. ++
T Consensus 1 ~k~~i---~G~~~~GKtsl~~~~~~~~-~~~~----------~~-------~t~~~~~~~~~~~--------------~~ 45 (173)
T cd04130 1 LKCVL---VGDGAVGKTSLIVSYTTNG-YPTE----------YV-------PTAFDNFSVVVLV--------------DG 45 (173)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC-CCCC----------CC-------CceeeeeeEEEEE--------------CC
Confidence 47888 9999999999999985421 1110 00 011 100111112 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH--HHHHHHHh--cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~--~~~~~~~~--~~~~~iv~iNKiD~~ 155 (794)
....+.+|||||+.+|.......++.+|++|+|+|..+....+.. ..+..+.. .++|+++++||+|+.
T Consensus 46 ~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 46 KPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 357889999999999887777788999999999999976554432 22333333 467899999999986
No 262
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.96 E-value=4.4e-09 Score=103.90 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHH-HHHh--cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~-~~~~--~~~~~iv~iNKiD~~ 155 (794)
..+.+.+|||||+.+|.......++.+|++|+|+|..+.-..+.. ..|. .+.. .++|+++++||+|+.
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 356799999999999888777888999999999999875444332 2232 2222 378999999999986
No 263
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.95 E-value=5.2e-09 Score=102.34 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=75.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..++|||||+.+++. |.... ....|+........+. .++.
T Consensus 1 ~ki~v---vG~~~~GKTsli~~~~~--~~~~~----------------~~~~t~~~~~~~~~~~------------~~~~ 47 (161)
T cd04117 1 FRLLL---IGDSGVGKTCLLCRFTD--NEFHS----------------SHISTIGVDFKMKTIE------------VDGI 47 (161)
T ss_pred CEEEE---ECcCCCCHHHHHHHHhc--CCCCC----------------CCCCceeeEEEEEEEE------------ECCE
Confidence 36888 99999999999999952 22111 0111222211111111 1223
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HHh---cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~~---~~~~~iv~iNKiD~~ 155 (794)
...+.+|||||..+|.......++.+|++++|+|..+.-..+...-|.. +.. .++|.+++.||.|+.
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 5688999999999998888889999999999999987544443333322 211 357889999999985
No 264
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.2e-09 Score=103.88 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=89.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|..++|||||+.++. .|-.+. + .--||..+..+..+.. .
T Consensus 4 ~~~KvvL---LG~~~VGKSSlV~Rfv--k~~F~e----------~------~e~TIGaaF~tktv~~------------~ 50 (200)
T KOG0092|consen 4 REFKVVL---LGDSGVGKSSLVLRFV--KDQFHE----------N------IEPTIGAAFLTKTVTV------------D 50 (200)
T ss_pred ceEEEEE---ECCCCCCchhhhhhhh--hCcccc----------c------cccccccEEEEEEEEe------------C
Confidence 4689999 9999999999999983 111111 0 1247777777777653 3
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCC-c-c--EEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-R-P--VLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~-~-~--iv~iNKiD~~ 155 (794)
....++-||||+|+.+|.+-....+|.|++||+|.|.++--+.+..+-|-.-..... | + .++.||+|+.
T Consensus 51 ~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 51 DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 347899999999999999999999999999999999999888888887744444333 3 2 3689999987
No 265
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.93 E-value=2.5e-09 Score=125.30 Aligned_cols=104 Identities=25% Similarity=0.267 Sum_probs=73.9
Q ss_pred cCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEEEEcC
Q 003804 18 NSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDS 97 (794)
Q Consensus 18 G~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlIDT 97 (794)
|.+|+|||||+++|.... .. .| + ..|+|++.....+.++ ++.++++||
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~--v~-----n------~pG~Tv~~~~~~i~~~----------------~~~i~lvDt 48 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QT--VG-----N------WPGVTVEKKEGKLGFQ----------------GEDIEIVDL 48 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---Ce--ec-----C------CCCeEEEEEEEEEEEC----------------CeEEEEEEC
Confidence 789999999999993211 00 11 1 3577877766666664 678999999
Q ss_pred CCccchHHH-----HHH---hhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 98 PGHVDFSSE-----VTA---ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 98 PGh~df~~e-----~~~---~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
||+.+|... +.+ ....+|++++|+|+...- .......++.+.++|+++++||+|+.
T Consensus 49 PG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 49 PGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred CCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 999887542 222 124689999999998732 23344456667899999999999986
No 266
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.93 E-value=1e-08 Score=111.88 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=72.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.|++ +|.+++|||||+++|....-.+ .++ ...|.......+.+. +.
T Consensus 159 dV~l---vG~pnaGKSTLl~~lt~~~~~v----------a~y------~fTT~~p~ig~v~~~---------------~~ 204 (329)
T TIGR02729 159 DVGL---VGLPNAGKSTLISAVSAAKPKI----------ADY------PFTTLVPNLGVVRVD---------------DG 204 (329)
T ss_pred cEEE---EcCCCCCHHHHHHHHhcCCccc----------cCC------CCCccCCEEEEEEeC---------------Cc
Confidence 6788 9999999999999994321111 111 112333433344443 24
Q ss_pred eEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCCC---cchhHHHHH-HHHHh-----cCCccEEEEecCc
Q 003804 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQTETVL-RQALG-----ERIRPVLTVNKMD 153 (794)
Q Consensus 90 ~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~g---v~~qt~~~~-~~~~~-----~~~~~iv~iNKiD 153 (794)
..+.|+||||..+ +.....+.+..+|++|+|+|+... ...+....| +++.. .+.|.++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 7899999999853 334456667789999999999864 222333333 33322 3579999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 285 L~ 286 (329)
T TIGR02729 285 LL 286 (329)
T ss_pred CC
Confidence 87
No 267
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.92 E-value=3.3e-09 Score=106.81 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=74.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|..|+|||||+.+++. |.... +...|+....... .. .++..
T Consensus 2 kivi---vG~~~vGKTsli~~~~~--~~~~~----------------~~~~t~~~~~~~~-i~------------~~~~~ 47 (189)
T cd04134 2 KVVV---LGDGACGKTSLLNVFTR--GYFPQ----------------VYEPTVFENYVHD-IF------------VDGLH 47 (189)
T ss_pred EEEE---ECCCCCCHHHHHHHHhc--CCCCC----------------ccCCcceeeeEEE-EE------------ECCEE
Confidence 6788 99999999999999953 11110 0011221111100 00 12235
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HH-HHHHh--cCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
..++||||||+.+|..-....++.+|++|+|+|..+-...+... .| ..+.. .+.|.++|.||+|+.
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~ 117 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 78999999999988776667788999999999998765555432 23 23322 367899999999987
No 268
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=8.5e-09 Score=99.77 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=89.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|..++|||||+.+++|..- + +.++-||.....+..+. .
T Consensus 20 ~k~~KlVf---lGdqsVGKTslItRf~yd~f--d----------------~~YqATIGiDFlskt~~------------l 66 (221)
T KOG0094|consen 20 LKKYKLVF---LGDQSVGKTSLITRFMYDKF--D----------------NTYQATIGIDFLSKTMY------------L 66 (221)
T ss_pred ceEEEEEE---EccCccchHHHHHHHHHhhh--c----------------ccccceeeeEEEEEEEE------------E
Confidence 45689999 99999999999999976432 1 12345777766666654 3
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHhcC----CccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGER----IRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~~~----~~~iv~iNKiD~~ 155 (794)
.+..+++-||||+|+..|..-+...+|.+..||+|.|.++--.......| .-+..++ +-+++|.||.|+.
T Consensus 67 ~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 67 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred cCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 55689999999999999999999999999999999999876555444444 4444332 3445899999997
No 269
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.90 E-value=3.5e-09 Score=104.68 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=72.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.+|++ +|+.++|||||+.+++... .... +-.|+.... ..+.+ ++
T Consensus 2 ~ki~i---iG~~~~GKTsl~~~~~~~~--~~~~----------------~~~t~~~~~~~~~~~--------------~~ 46 (175)
T cd01870 2 KKLVI---VGDGACGKTCLLIVFSKDQ--FPEV----------------YVPTVFENYVADIEV--------------DG 46 (175)
T ss_pred cEEEE---ECCCCCCHHHHHHHHhcCC--CCCC----------------CCCccccceEEEEEE--------------CC
Confidence 57888 9999999999999995321 1000 001111111 12222 22
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHH-HHh--cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-ALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~-~~~--~~~~~iv~iNKiD~~ 155 (794)
+...+.+|||||+.+|.......++.+|++++|+|...-...... ..|.. +.. .++|.++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 356789999999998877666788999999999998854332222 22322 222 377999999999986
No 270
>PLN00023 GTP-binding protein; Provisional
Probab=98.90 E-value=6e-09 Score=111.29 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=79.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce--EEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~ 84 (794)
..++|++ +|..++|||||+.+++. +.... ....|+.... ..+.+........++ ..
T Consensus 20 ~~iKIVL---LGdsGVGKTSLI~rf~~--g~F~~----------------~~~pTIG~d~~ik~I~~~~~~~~~~~i-k~ 77 (334)
T PLN00023 20 GQVRVLV---VGDSGVGKSSLVHLIVK--GSSIA----------------RPPQTIGCTVGVKHITYGSPGSSSNSI-KG 77 (334)
T ss_pred cceEEEE---ECCCCCcHHHHHHHHhc--CCccc----------------ccCCceeeeEEEEEEEECCcccccccc-cc
Confidence 3579999 99999999999999952 11100 0112332221 112221000000000 00
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHhc---------------CCccEEE
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE---------------RIRPVLT 148 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~~---------------~~~~iv~ 148 (794)
...+.+.++||||+|+..|.......++.+|++|+|+|.+.-.......-| ..+... ++|++||
T Consensus 78 d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILV 157 (334)
T PLN00023 78 DSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVI 157 (334)
T ss_pred cCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEE
Confidence 012457899999999999998888999999999999999875444443334 333322 3688999
Q ss_pred EecCccc
Q 003804 149 VNKMDRC 155 (794)
Q Consensus 149 iNKiD~~ 155 (794)
.||+|+.
T Consensus 158 GNK~DL~ 164 (334)
T PLN00023 158 GNKADIA 164 (334)
T ss_pred EECcccc
Confidence 9999986
No 271
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.90 E-value=1.8e-08 Score=98.07 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=71.8
Q ss_pred EEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCce
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (794)
|++ +|+.|+|||||++.|......... .+ ..+.|.... .+.+ ..
T Consensus 2 i~l---~G~~g~GKTtL~~~l~~~~~~~~~--~~------------~~~~t~~~~--~~~~-----------------~~ 45 (170)
T cd01876 2 IAF---AGRSNVGKSSLINALTNRKKLART--SK------------TPGKTQLIN--FFNV-----------------ND 45 (170)
T ss_pred EEE---EcCCCCCHHHHHHHHhcCCceeee--cC------------CCCcceeEE--EEEc-----------------cC
Confidence 566 999999999999999531111000 11 112222111 1122 23
Q ss_pred EEEEEcCCCccch----------HHHHHHhh---hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 91 LINLIDSPGHVDF----------SSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 91 ~inlIDTPGh~df----------~~e~~~~l---~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+.+|||||+.+. ...+...+ ..++++++++|...........+++.+...+.|.++++||+|+.
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 8899999997552 22222223 35678999999998877777777788888888999999999986
No 272
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=7.9e-09 Score=99.16 Aligned_cols=116 Identities=22% Similarity=0.152 Sum_probs=80.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..+++.+ +|..|+|||.|+-++. .+....+.. .|+......-.+ +.+
T Consensus 5 ~~fKyIi---iGd~gVGKSclllrf~-----------~krF~~~hd-------~TiGvefg~r~~------------~id 51 (216)
T KOG0098|consen 5 YLFKYII---IGDTGVGKSCLLLRFT-----------DKRFQPVHD-------LTIGVEFGARMV------------TID 51 (216)
T ss_pred ceEEEEE---ECCCCccHHHHHHHHh-----------ccCcccccc-------ceeeeeeceeEE------------EEc
Confidence 4578888 9999999999988882 211111110 122221111111 135
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH----HHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~----~~~~~~~~~~iv~iNKiD~~ 155 (794)
++..++++|||.||..|.+-+...+|.+-|||||.|...--+..-...| ++....++.++++.||.|+.
T Consensus 52 ~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 52 GKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred CceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 5788999999999999999999999999999999999866555544444 23233566778899999987
No 273
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.89 E-value=1.5e-08 Score=114.97 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=72.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
-.|++ +|.+++|||||+++|....-. ..|+ .+.|+......+.+.
T Consensus 160 adV~L---VG~PNAGKSTLln~Ls~akpk----------Iady------pfTTl~P~lGvv~~~---------------- 204 (500)
T PRK12296 160 ADVGL---VGFPSAGKSSLISALSAAKPK----------IADY------PFTTLVPNLGVVQAG---------------- 204 (500)
T ss_pred ceEEE---EEcCCCCHHHHHHHHhcCCcc----------cccc------CcccccceEEEEEEC----------------
Confidence 36888 999999999999999432111 1111 234555555555553
Q ss_pred ceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCC---Ccch-hHHHHH-HHHH--------------hcC
Q 003804 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---GVCV-QTETVL-RQAL--------------GER 142 (794)
Q Consensus 89 ~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~---gv~~-qt~~~~-~~~~--------------~~~ 142 (794)
+..|.|+||||..+ +..+..+.+..+|++|+|||+.. +..+ +....| .++. ..+
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 67899999999642 22345566778999999999974 2111 111111 1221 235
Q ss_pred CccEEEEecCccc
Q 003804 143 IRPVLTVNKMDRC 155 (794)
Q Consensus 143 ~~~iv~iNKiD~~ 155 (794)
.|.|+|+||+|++
T Consensus 285 kP~IVVlNKiDL~ 297 (500)
T PRK12296 285 RPRLVVLNKIDVP 297 (500)
T ss_pred CCEEEEEECccch
Confidence 7999999999987
No 274
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.88 E-value=9.8e-09 Score=104.10 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=68.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..|+|||||+++|+...... .|.. ..+. ...|.... .+. ...
T Consensus 2 ~kI~i---~G~~g~GKSSLin~L~g~~~~~----~~~~-~~~~------~~~t~~~~----~~~-------------~~~ 50 (197)
T cd04104 2 LNIAV---TGESGAGKSSFINALRGVGHEE----EGAA-PTGV------VETTMKRT----PYP-------------HPK 50 (197)
T ss_pred eEEEE---ECCCCCCHHHHHHHHhccCCCC----CCcc-ccCc------cccccCce----eee-------------cCC
Confidence 68889 9999999999999996421100 1110 0000 00111110 111 011
Q ss_pred ceEEEEEcCCCccchHH---HHH--HhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSS---EVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~---e~~--~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
...+.+|||||..+... +.. ..+..+|.+++|.| ..........++.+...+.|.++|+||+|+.
T Consensus 51 ~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 51 FPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred CCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 34689999999864322 211 23456788777654 3455555667777788888999999999995
No 275
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.87 E-value=9.3e-09 Score=106.21 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=70.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCccc--ccceEEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI--KSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi--~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++|++ +|..|+|||||+++++. |.... . ....|+ +....++.+ +
T Consensus 1 ~KI~l---vG~~gvGKTsLi~~~~~--~~~~~---~------------~~~~t~~~~~~~~~i~~--------------~ 46 (221)
T cd04148 1 YRVVM---LGSPGVGKSSLASQFTS--GEYDD---H------------AYDASGDDDTYERTVSV--------------D 46 (221)
T ss_pred CEEEE---ECCCCCcHHHHHHHHhc--CCcCc---c------------CcCCCccccceEEEEEE--------------C
Confidence 47888 99999999999999942 22110 0 000111 111112222 1
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhh-ccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALR-ITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~-~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+....+++|||||+.++.. ...++ .+|++++|+|+.+.-.......| ..+.. .++|.|+|.||+|+.
T Consensus 47 ~~~~~l~i~Dt~G~~~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 47 GEESTLVVIDHWEQEMWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred CEEEEEEEEeCCCcchHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 2367899999999984432 34556 89999999999986544433222 33333 367999999999986
No 276
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.87 E-value=1.9e-08 Score=112.68 Aligned_cols=112 Identities=20% Similarity=0.135 Sum_probs=71.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
-|++ +|.+++|||||+++|....-.+. ++ .+.|+......+.+. .+
T Consensus 160 dVgl---VG~pNaGKSTLLn~Lt~ak~kIa----------~y------pfTTl~PnlG~v~~~---------------~~ 205 (424)
T PRK12297 160 DVGL---VGFPNVGKSTLLSVVSNAKPKIA----------NY------HFTTLVPNLGVVETD---------------DG 205 (424)
T ss_pred cEEE---EcCCCCCHHHHHHHHHcCCCccc----------cC------CcceeceEEEEEEEe---------------CC
Confidence 6788 99999999999999953221111 11 123444443334442 25
Q ss_pred eEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCCC--cch-hH-HHHHHHHHh-----cCCccEEEEecCc
Q 003804 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG--VCV-QT-ETVLRQALG-----ERIRPVLTVNKMD 153 (794)
Q Consensus 90 ~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~g--v~~-qt-~~~~~~~~~-----~~~~~iv~iNKiD 153 (794)
..|.|+||||... +.....+.+..+|++|+|||++.. ..+ +. ..+...+.. .++|.++|+||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D 285 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD 285 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence 7899999999743 233455666779999999999743 222 22 223333333 3679999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 286 L~ 287 (424)
T PRK12297 286 LP 287 (424)
T ss_pred Cc
Confidence 75
No 277
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.86 E-value=9.2e-09 Score=97.08 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=46.6
Q ss_pred EEEcCCC----ccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 93 NLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 93 nlIDTPG----h~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++||||| +..|....+.....||.+++|.||++..+.-.- ..+...+.|.|-||||+|+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCc
Confidence 5699999 566888888888899999999999986433222 23344567989999999997
No 278
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.83 E-value=1.1e-08 Score=105.56 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=77.4
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.++.+|++ +|.+|+|||||+|.|+...-.... +.... |-......+.-
T Consensus 70 ~k~L~vav---IG~PNvGKStLtN~mig~kv~~vS---------~K~~T------Tr~~ilgi~ts-------------- 117 (379)
T KOG1423|consen 70 QKSLYVAV---IGAPNVGKSTLTNQMIGQKVSAVS---------RKVHT------TRHRILGIITS-------------- 117 (379)
T ss_pred ceEEEEEE---EcCCCcchhhhhhHhhCCcccccc---------ccccc------eeeeeeEEEec--------------
Confidence 36789999 999999999999999543222111 11111 11111111111
Q ss_pred CCCceEEEEEcCCCcc------------chHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh-cCCccEEEEecC
Q 003804 86 QGNEYLINLIDSPGHV------------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ERIRPVLTVNKM 152 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~------------df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~-~~~~~iv~iNKi 152 (794)
....+.|.||||-. .|..+...|+..||.+++|+|+.+--..-.-++++-..+ ..+|-|++.||+
T Consensus 118 --~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnki 195 (379)
T KOG1423|consen 118 --GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKI 195 (379)
T ss_pred --CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccch
Confidence 47899999999942 255578899999999999999986322222345555444 467999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|.+
T Consensus 196 d~~ 198 (379)
T KOG1423|consen 196 DKL 198 (379)
T ss_pred hcc
Confidence 987
No 279
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.83 E-value=3.5e-08 Score=103.47 Aligned_cols=112 Identities=24% Similarity=0.256 Sum_probs=71.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCccc-ccceEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI-KSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi-~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
....|+| .|++|+|||||+.++ .+. .++-..+-.|- +.....|++
T Consensus 167 ~~pTivV---aG~PNVGKSSlv~~l-----------T~A------kpEvA~YPFTTK~i~vGhfe~-------------- 212 (346)
T COG1084 167 DLPTIVV---AGYPNVGKSSLVRKL-----------TTA------KPEVAPYPFTTKGIHVGHFER-------------- 212 (346)
T ss_pred CCCeEEE---ecCCCCcHHHHHHHH-----------hcC------CCccCCCCccccceeEeeeec--------------
Confidence 3456667 899999999999999 221 01111112222 222333333
Q ss_pred CCCceEEEEEcCCCccc--------hHHHHHHhhhc-cCceEEEEeCCC--C--cchhHHHHHHHHHh-cCCccEEEEec
Q 003804 86 QGNEYLINLIDSPGHVD--------FSSEVTAALRI-TDGALVVVDCIE--G--VCVQTETVLRQALG-ERIRPVLTVNK 151 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~d--------f~~e~~~~l~~-~D~ailvvda~~--g--v~~qt~~~~~~~~~-~~~~~iv~iNK 151 (794)
+..+|.+|||||--| --.+.+.|++. .+.+++++|+++ | +..|- .+|+.+.. .+.|.++|+||
T Consensus 213 --~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~~p~v~V~nK 289 (346)
T COG1084 213 --GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELFKAPIVVVINK 289 (346)
T ss_pred --CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhcCCCeEEEEec
Confidence 467999999999765 23457778875 456778999986 3 33443 35666654 45578899999
Q ss_pred Cccc
Q 003804 152 MDRC 155 (794)
Q Consensus 152 iD~~ 155 (794)
+|..
T Consensus 290 ~D~~ 293 (346)
T COG1084 290 IDIA 293 (346)
T ss_pred cccc
Confidence 9986
No 280
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.81 E-value=4.3e-08 Score=100.51 Aligned_cols=159 Identities=21% Similarity=0.161 Sum_probs=102.4
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+++||-+ +|..|+|||||+|+|++....-... .|. .+|-....+.
T Consensus 37 ~~pvnvLi---~G~TG~GKSSliNALF~~~~~~v~~-vg~--~t~~~~~~~~---------------------------- 82 (296)
T COG3596 37 KEPVNVLL---MGATGAGKSSLINALFQGEVKEVSK-VGV--GTDITTRLRL---------------------------- 82 (296)
T ss_pred cCceeEEE---ecCCCCcHHHHHHHHHhccCceeee-ccc--CCCchhhHHh----------------------------
Confidence 35688888 9999999999999997543322211 220 1111111111
Q ss_pred CCCceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcC--CccEEEEecCccch
Q 003804 86 QGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER--IRPVLTVNKMDRCF 156 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~--~~~iv~iNKiD~~~ 156 (794)
.+.+..++||||||..| +.......+.-.|.+++++++.+.--...+..|+.+...+ .+.+++||..|+..
T Consensus 83 ~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 83 SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhc
Confidence 11257899999999877 5556778888999999999999877777778888776544 57889999999963
Q ss_pred h--cc----CCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceee
Q 003804 157 L--EL----QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 212 (794)
Q Consensus 157 ~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 212 (794)
- +| +.....+.+.+++..+.+...+. |. .+|.+.++..+|++
T Consensus 163 p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q-------------~V-~pV~~~~~r~~wgl 210 (296)
T COG3596 163 PGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ-------------EV-KPVVAVSGRLPWGL 210 (296)
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHh-------------hc-CCeEEeccccCccH
Confidence 2 11 11223333444444444444332 21 25888888888964
No 281
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.80 E-value=4.5e-08 Score=95.40 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=77.2
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|..++|||||+.+|... ..... ...|+........+. .++..
T Consensus 1 Ki~v---vG~~~vGKtsl~~~~~~~--~~~~~----------------~~~t~~~~~~~~~~~------------~~~~~ 47 (162)
T PF00071_consen 1 KIVV---VGDSGVGKTSLINRLING--EFPEN----------------YIPTIGIDSYSKEVS------------IDGKP 47 (162)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHS--STTSS----------------SETTSSEEEEEEEEE------------ETTEE
T ss_pred CEEE---ECCCCCCHHHHHHHHHhh--ccccc----------------ccccccccccccccc------------ccccc
Confidence 6788 999999999999998532 11110 011221111222222 12357
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHH-Hh---cCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~-~~---~~~~~iv~iNKiD~~ 155 (794)
+.+.||||+|+.+|.......++.+|++|+|+|....-......-|... .. ...|++++.||.|+.
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 8899999999999988788889999999999999876555554455332 21 246888999999987
No 282
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.76 E-value=3.7e-08 Score=101.28 Aligned_cols=115 Identities=19% Similarity=0.170 Sum_probs=78.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|..|+|||||+.+|.... ... .+..|+.......... ...
T Consensus 5 ~~kivv---~G~~g~GKTtl~~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~------------~~~ 51 (219)
T COG1100 5 EFKIVV---LGDGGVGKTTLLNRLVGDE--FPE----------------GYPPTIGNLDPAKTIE------------PYR 51 (219)
T ss_pred eEEEEE---EcCCCccHHHHHHHHhcCc--Ccc----------------cCCCceeeeeEEEEEE------------eCC
Confidence 378999 9999999999999994211 110 1112332222222221 111
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-cchhHHHHHH-HHHhc---CCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLR-QALGE---RIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-v~~qt~~~~~-~~~~~---~~~~iv~iNKiD~~ 155 (794)
...++.+|||+|+.+|..-+....+.++++++++|.... ........|. .+... +.|++++.||+|+.
T Consensus 52 ~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 52 RNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred CEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 256799999999999998899999999999999999862 2333344444 43332 57999999999997
No 283
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.5e-08 Score=98.43 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=83.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|.+ +|..++|||.++.++...+ ... .+. .- |-|+....++. .+
T Consensus 11 ~~~kvll---iGDs~vGKt~~l~rf~d~~--f~~---------~~~---sT--iGIDFk~kti~--------------l~ 57 (207)
T KOG0078|consen 11 YLFKLLL---IGDSGVGKTCLLLRFSDDS--FNT---------SFI---ST--IGIDFKIKTIE--------------LD 57 (207)
T ss_pred eEEEEEE---ECCCCCchhHhhhhhhhcc--CcC---------Ccc---ce--EEEEEEEEEEE--------------eC
Confidence 4589999 9999999999999984221 111 000 00 11222222222 23
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHH----HhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~----~~~~~~~iv~iNKiD~~ 155 (794)
++..++-+|||.|+..|..-+..++|.|+|++||+|.+...+.....-|... ...+++.++|.||+|+.
T Consensus 58 g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 58 GKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred CeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 4578899999999999999999999999999999999988777666656333 23478999999999987
No 284
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.71 E-value=5.8e-08 Score=98.22 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=50.1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHH-HHh--cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-ALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~-~~~--~~~~~iv~iNKiD~~ 155 (794)
+++.+.++||||+|..+. .....++.+|++|+|+|..+....+... .|.. +.. .+.|++++.||+|+.
T Consensus 62 ~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 62 DGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 345789999999998753 2344678999999999998766555442 4533 322 367889999999986
No 285
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=4.5e-08 Score=107.19 Aligned_cols=112 Identities=23% Similarity=0.245 Sum_probs=84.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
.-++|+| +|++|+|||||+|+|......|..+..| .|-++-.+.+..
T Consensus 267 ~gl~iaI---vGrPNvGKSSLlNaL~~~drsIVSpv~G---------------TTRDaiea~v~~--------------- 313 (531)
T KOG1191|consen 267 SGLQIAI---VGRPNVGKSSLLNALSREDRSIVSPVPG---------------TTRDAIEAQVTV--------------- 313 (531)
T ss_pred cCCeEEE---EcCCCCCHHHHHHHHhcCCceEeCCCCC---------------cchhhheeEeec---------------
Confidence 3478999 9999999999999999888888887677 355555555555
Q ss_pred CCceEEEEEcCCCccc---------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecC
Q 003804 87 GNEYLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d---------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKi 152 (794)
+++.+.|+||+|... =......++..+|.+++|||+.++...+...+.+.+...+.-+.+.+|||
T Consensus 314 -~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 314 -NGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred -CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 499999999999765 11235667789999999999999887777777777766554444444443
No 286
>PRK09866 hypothetical protein; Provisional
Probab=98.70 E-value=1.5e-07 Score=107.16 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCccc-----hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCC--ccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVD-----FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI--RPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~d-----f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~--~~iv~iNKiD~~ 155 (794)
...+.|+||||... +...+..++..+|.+++|||+..+.....+.+.+.+.+.+. |.++++||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 36789999999643 45567889999999999999999888888888888877774 989999999985
No 287
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.69 E-value=2.7e-08 Score=91.69 Aligned_cols=111 Identities=20% Similarity=0.149 Sum_probs=77.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
...+.+ +|-.++|||||++... .|-..+ .-+.|+......+. .
T Consensus 20 emel~l---vGLq~sGKtt~Vn~ia--~g~~~e----------------dmiptvGfnmrk~t----------------k 62 (186)
T KOG0075|consen 20 EMELSL---VGLQNSGKTTLVNVIA--RGQYLE----------------DMIPTVGFNMRKVT----------------K 62 (186)
T ss_pred eeeEEE---EeeccCCcceEEEEEe--eccchh----------------hhcccccceeEEec----------------c
Confidence 467777 9999999999998762 111100 11223333322222 2
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc--chhH---HHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--CVQT---ETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv--~~qt---~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+..+-++|.||+..|.....+..|.+|+.+.+|||.+.- +..- ..++....-.++|+++..||+|++
T Consensus 63 gnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 63 GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred CceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCc
Confidence 3688999999999999999999999999999999999731 1111 222322234678999999999999
No 288
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.68 E-value=1.6e-08 Score=94.01 Aligned_cols=115 Identities=20% Similarity=0.204 Sum_probs=84.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|..-+|||+|+-+.... .. .+ ++--|+.++..+-..+ .++
T Consensus 13 ~FK~VL---LGEGCVGKtSLVLRy~En--kF----------n~------kHlsTlQASF~~kk~n------------~ed 59 (218)
T KOG0088|consen 13 KFKIVL---LGEGCVGKTSLVLRYVEN--KF----------NC------KHLSTLQASFQNKKVN------------VED 59 (218)
T ss_pred eeEEEE---EcCCccchhHHHHHHHHh--hc----------ch------hhHHHHHHHHhhcccc------------ccc
Confidence 578899 999999999998777421 00 01 1112444443333222 233
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH----HHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~----~~~~~~~~~~iv~iNKiD~~ 155 (794)
+...++||||+|+..|..--.-.+|.+|||+||.|.++....|-...| +.+....+-.++|.||+|+.
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 566899999999999987777788999999999999999888888777 44555566788999999986
No 289
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=4.8e-08 Score=94.44 Aligned_cols=112 Identities=20% Similarity=0.157 Sum_probs=86.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
++..+|.+ +|--+|||||++..| ..|.+.. .-.|+....-.+.|+
T Consensus 15 ~~e~~Ilm---lGLD~AGKTTILykL--k~~E~vt-----------------tvPTiGfnVE~v~yk------------- 59 (181)
T KOG0070|consen 15 KKEMRILM---VGLDAAGKTTILYKL--KLGEIVT-----------------TVPTIGFNVETVEYK------------- 59 (181)
T ss_pred cceEEEEE---EeccCCCceeeeEee--ccCCccc-----------------CCCccccceeEEEEc-------------
Confidence 46788988 999999999998887 2332222 124788888888885
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc--chhHHHHHHHHHh---cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--CVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv--~~qt~~~~~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+..+++||.-|+..++.-.....+..+++|+|||+++-. ...-.++.+.... .+.|.+++.||.|.+
T Consensus 60 ---n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 60 ---NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred ---ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 899999999999999999999999999999999999752 2222334444433 356888999999998
No 290
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.67 E-value=7.1e-08 Score=96.87 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=71.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceE-EEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (794)
.+|++ +|..|+|||||++++.. |.... +...|+..... .+.+ ++
T Consensus 2 ~Ki~i---vG~~g~GKStLl~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~--------------~~ 46 (187)
T cd04129 2 RKLVI---VGDGACGKTSLLSVFTL--GEFPE----------------EYHPTVFENYVTDCRV--------------DG 46 (187)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHh--CCCCc----------------ccCCcccceEEEEEEE--------------CC
Confidence 47888 99999999999999952 21111 00011111111 1112 12
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHH-HH--hcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-AL--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~-~~--~~~~~~iv~iNKiD~~ 155 (794)
....++++||||+.+|.......++.+|++++++|....-..+... .|.. +. ...+|++++.||+|+.
T Consensus 47 ~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 47 KPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred EEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 3467899999999887655455678999999999987654443322 2322 22 2357899999999985
No 291
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.66 E-value=2e-07 Score=87.85 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=83.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.+.|-| +|.-||||||+..+|+...-- . --.|.....-++.+
T Consensus 15 rE~riLi---LGLdNsGKTti~~kl~~~~~~--~-----------------i~pt~gf~Iktl~~--------------- 57 (185)
T KOG0073|consen 15 REVRILI---LGLDNSGKTTIVKKLLGEDTD--T-----------------ISPTLGFQIKTLEY--------------- 57 (185)
T ss_pred heeEEEE---EecCCCCchhHHHHhcCCCcc--c-----------------cCCccceeeEEEEe---------------
Confidence 4678888 999999999999999432210 0 01244444455566
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcch-hHHHHHHHHH----hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~-qt~~~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+++.+|++|.-|+..+..-...++..+|+.|.|||+.+-... ++...+..+. -.|.|++++.||.|..
T Consensus 58 -~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 58 -KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred -cceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 489999999999999999999999999999999999876433 3444444443 3467999999999997
No 292
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=4.7e-08 Score=96.10 Aligned_cols=116 Identities=19% Similarity=0.156 Sum_probs=83.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
--++|++ +|.+++|||-|+.++.. .. ..+|+ .-||.....+.... .+
T Consensus 13 ylFKiVl---iGDS~VGKsnLlsRftr--nE---------F~~~S-------ksTIGvef~t~t~~------------vd 59 (222)
T KOG0087|consen 13 YLFKIVL---IGDSAVGKSNLLSRFTR--NE---------FSLES-------KSTIGVEFATRTVN------------VD 59 (222)
T ss_pred eEEEEEE---eCCCccchhHHHHHhcc--cc---------cCccc-------ccceeEEEEeecee------------ec
Confidence 3578999 99999999999999821 11 11111 11332222222221 35
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
++..+..||||+|+..|..-+....|.+-||+||.|.+...+.+...-| ++++. .+++++++.||.|+.
T Consensus 60 ~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 60 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred CcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 5778899999999999998899999999999999999987777765555 44443 467888999999986
No 293
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.64 E-value=4.5e-07 Score=95.00 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=68.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++|+|||||+|+|+........ ++ .+.|.........+
T Consensus 30 ~~~~Ill---vG~tGvGKSSliNaLlg~~~~~v~---------~~------~~~T~~~~~~~~~~--------------- 76 (249)
T cd01853 30 FSLTILV---LGKTGVGKSSTINSIFGERKAATS---------AF------QSETLRVREVSGTV--------------- 76 (249)
T ss_pred CCeEEEE---ECCCCCcHHHHHHHHhCCCCcccC---------CC------CCceEEEEEEEEEE---------------
Confidence 4689999 999999999999999754332111 11 01122222223333
Q ss_pred CCceEEEEEcCCCccchHH------H----HHHhhh--ccCceEEEEeCCC-CcchhHHHHHHHHHh-cC----CccEEE
Q 003804 87 GNEYLINLIDSPGHVDFSS------E----VTAALR--ITDGALVVVDCIE-GVCVQTETVLRQALG-ER----IRPVLT 148 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~------e----~~~~l~--~~D~ailvvda~~-gv~~qt~~~~~~~~~-~~----~~~iv~ 148 (794)
.+..+++|||||..+... + +.+.+. ..|.+++|..... ........+++.+.. .+ .+.+++
T Consensus 77 -~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV 155 (249)
T cd01853 77 -DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVV 155 (249)
T ss_pred -CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEE
Confidence 368899999999887631 1 222222 4566666643332 233444455555543 23 367899
Q ss_pred EecCccc
Q 003804 149 VNKMDRC 155 (794)
Q Consensus 149 iNKiD~~ 155 (794)
+||.|..
T Consensus 156 ~T~~d~~ 162 (249)
T cd01853 156 LTHAASS 162 (249)
T ss_pred EeCCccC
Confidence 9999985
No 294
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.63 E-value=8.3e-08 Score=93.69 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=69.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|..|+|||||+.+++. +.... +..+ +.......+.+ +++
T Consensus 1 ~ki~v---vG~~gvGKTsli~~~~~--~~f~~---------~~~~-------~~~~~~~~i~~--------------~~~ 45 (158)
T cd04103 1 LKLGI---VGNLQSGKSALVHRYLT--GSYVQ---------LESP-------EGGRFKKEVLV--------------DGQ 45 (158)
T ss_pred CEEEE---ECCCCCcHHHHHHHHHh--CCCCC---------CCCC-------CccceEEEEEE--------------CCE
Confidence 47888 99999999999999853 11111 0000 00000111222 223
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
.+.+.+|||+|..+. ...+.+|++++|+|..+-...+.. ..+..+.. .++|++++.||.|+.
T Consensus 46 ~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 46 SHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 577999999999752 356789999999999988777763 33344433 346888999999974
No 295
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.5e-07 Score=87.18 Aligned_cols=114 Identities=23% Similarity=0.226 Sum_probs=79.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
+++.+ +|+.|.|||.|+.+++...= -|...+ --|+-..+..++ ..++
T Consensus 10 fKfl~---iG~aGtGKSCLLh~Fie~kf------------kDdssH--TiGveFgSrIin----------------VGgK 56 (214)
T KOG0086|consen 10 FKFLV---IGSAGTGKSCLLHQFIENKF------------KDDSSH--TIGVEFGSRIVN----------------VGGK 56 (214)
T ss_pred heeEE---eccCCCChhHHHHHHHHhhh------------cccccc--eeeeeecceeee----------------ecCc
Confidence 57777 89999999999999863211 000000 011222222222 2346
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH----HHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~----~~~~~~~~~~iv~iNKiD~~ 155 (794)
..++.||||+|+..|.+-+...+|.+-||+||.|++..........| +.+...++-+|++.||-|+.
T Consensus 57 ~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 57 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred EEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 78999999999999999999999999999999999987766666666 23333455566789999986
No 296
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.62 E-value=3.5e-07 Score=94.31 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=80.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|.+ +|+.++||||....+...... + +-..-|.|++.....+.+. ..
T Consensus 1 KiLL---mG~~~SGKTSi~~vIF~~~~p--~-------------dT~~L~~T~~ve~~~v~~~---------------~~ 47 (232)
T PF04670_consen 1 KILL---MGPRRSGKTSIRSVIFHKYSP--R-------------DTLRLEPTIDVEKSHVRFL---------------SF 47 (232)
T ss_dssp EEEE---EESTTSSHHHHHHHHHS---G--G-------------GGGG-----SEEEEEEECT---------------TS
T ss_pred CEEE---EcCCCCChhhHHHHHHcCCCc--h-------------hccccCCcCCceEEEEecC---------------CC
Confidence 5777 999999999999988422111 0 1112245666665555543 36
Q ss_pred eEEEEEcCCCccchHHH-----HHHhhhccCceEEEEeCCCCcchhH----HHHHHHHHh--cCCccEEEEecCccchhc
Q 003804 90 YLINLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIEGVCVQT----ETVLRQALG--ERIRPVLTVNKMDRCFLE 158 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e-----~~~~l~~~D~ailvvda~~gv~~qt----~~~~~~~~~--~~~~~iv~iNKiD~~~~~ 158 (794)
..+++||+||+.+|... ...-++.+++.|.|+|+........ ...+..+.+ .+.+.-+++.|||..
T Consensus 48 ~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l--- 124 (232)
T PF04670_consen 48 LPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL--- 124 (232)
T ss_dssp CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS---
T ss_pred cEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC---
Confidence 79999999999988765 4667899999999999993322222 223344443 345666999999986
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhhh
Q 003804 159 LQVDGEEAYQTFQKVIENANVIMA 182 (794)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~ 182 (794)
..+.-.+.++.+.+.+...+.
T Consensus 125 ---~~~~r~~~~~~~~~~i~~~~~ 145 (232)
T PF04670_consen 125 ---SEDEREEIFRDIQQRIRDELE 145 (232)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555555554443
No 297
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.61 E-value=4.6e-07 Score=93.94 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCccch-------------HHHHHHhhh-ccCceEEEEeCCCCcchhH-HHHHHHHHhcCCccEEEEecCc
Q 003804 89 EYLINLIDSPGHVDF-------------SSEVTAALR-ITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 89 ~~~inlIDTPGh~df-------------~~e~~~~l~-~~D~ailvvda~~gv~~qt-~~~~~~~~~~~~~~iv~iNKiD 153 (794)
...++||||||..+. ...+..+++ ..+.+++|+|+..++..+. .++.+.+...+.+.++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 468999999998532 123556677 4568999999999988877 5777888888999999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
..
T Consensus 204 ~~ 205 (240)
T smart00053 204 LM 205 (240)
T ss_pred CC
Confidence 87
No 298
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.60 E-value=3.4e-08 Score=83.32 Aligned_cols=71 Identities=37% Similarity=0.580 Sum_probs=58.5
Q ss_pred eEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eee
Q 003804 385 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLT 460 (794)
Q Consensus 385 l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~ 460 (794)
++++|||||+|++||.|++++ +.+ ++ +....+|.+|+.+++...+++..+.||+++++.++++.+ +.| |||
T Consensus 3 v~~grV~sG~l~~gd~v~~~~-~~~-~~--~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i-~~Gdtl~ 74 (74)
T PF03144_consen 3 VATGRVYSGTLKKGDKVRVLP-NGT-GK--KGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAI-RRGDTLT 74 (74)
T ss_dssp EEEEEEEESEEETTEEEEEES-TTT-TE--ECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCS-STTEEEE
T ss_pred EEEEEEEEeEEcCCCEEEECc-cCC-cc--eeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCc-CcCCEEC
Confidence 899999999999999999876 422 11 123479999999999999999999999999999999821 455 775
No 299
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.3e-07 Score=91.45 Aligned_cols=126 Identities=20% Similarity=0.249 Sum_probs=81.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.|-+ +|..|||||+|.-.|.+... .+. -.+|......+... +
T Consensus 40 ~Vll---~Gl~dSGKT~LF~qL~~gs~------~~T-------------vtSiepn~a~~r~g----------------s 81 (238)
T KOG0090|consen 40 AVLL---VGLSDSGKTSLFTQLITGSH------RGT-------------VTSIEPNEATYRLG----------------S 81 (238)
T ss_pred cEEE---EecCCCCceeeeeehhcCCc------cCe-------------eeeeccceeeEeec----------------C
Confidence 4566 89999999999998853211 121 12445555555443 4
Q ss_pred eEEEEEcCCCccchHHHHHHhhh---ccCceEEEEeCCCCc---chhHHHHHHHHH-----hcCCccEEEEecCccchhc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALR---ITDGALVVVDCIEGV---CVQTETVLRQAL-----GERIRPVLTVNKMDRCFLE 158 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~---~~D~ailvvda~~gv---~~qt~~~~~~~~-----~~~~~~iv~iNKiD~~~~~ 158 (794)
....|||-|||..........+. .+-++|+|||+..-. ..-.+.++..+. ..+.|.+++.||-|+.
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~--- 158 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF--- 158 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh---
Confidence 45899999999998888777776 789999999998542 222233333332 3445677899999998
Q ss_pred cCCCHH-HHHHHHHHHHHHh
Q 003804 159 LQVDGE-EAYQTFQKVIENA 177 (794)
Q Consensus 159 ~~~~~~-~~~~~~~~~~~~~ 177 (794)
-+.+. .+.+.++.-+..+
T Consensus 159 -tAkt~~~Ir~~LEkEi~~l 177 (238)
T KOG0090|consen 159 -TAKTAEKIRQQLEKEIHKL 177 (238)
T ss_pred -hcCcHHHHHHHHHHHHHHH
Confidence 66444 3444444444443
No 300
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.54 E-value=3.3e-07 Score=105.09 Aligned_cols=109 Identities=25% Similarity=0.331 Sum_probs=78.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCcee-ecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~-~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
..||+ +|++|+|||||.|+| .|... +-++ .|.|++.....+.++
T Consensus 4 ~~val---vGNPNvGKTtlFN~L-----------TG~~q~VgNw------pGvTVEkkeg~~~~~--------------- 48 (653)
T COG0370 4 LTVAL---VGNPNVGKTTLFNAL-----------TGANQKVGNW------PGVTVEKKEGKLKYK--------------- 48 (653)
T ss_pred ceEEE---ecCCCccHHHHHHHH-----------hccCceecCC------CCeeEEEEEEEEEec---------------
Confidence 45899 999999999999999 33211 1111 478888888888875
Q ss_pred CceEEEEEcCCCccchHH-----H-HHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSS-----E-VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~-----e-~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.+.++|.||--++.. . +.+.+ -..|.+|-||||+.= .....+--|+.+.++|+++++|++|..
T Consensus 49 -~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 49 -GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred -CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 88899999999654332 1 22223 257999999999841 122233356778999999999999985
No 301
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.54 E-value=8.7e-07 Score=92.25 Aligned_cols=98 Identities=28% Similarity=0.273 Sum_probs=64.2
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|.+++|||||+++|...... .+. ..+.|+......+.+. +
T Consensus 2 ~v~l---vG~~~~GKStLl~~Ltg~~~~-----v~~-----------~~~tT~~~~~g~~~~~----------------~ 46 (233)
T cd01896 2 RVAL---VGFPSVGKSTLLSKLTNTKSE-----VAA-----------YEFTTLTCVPGVLEYK----------------G 46 (233)
T ss_pred EEEE---ECCCCCCHHHHHHHHHCCCcc-----ccC-----------CCCccccceEEEEEEC----------------C
Confidence 5677 999999999999999422110 110 0122333333344453 7
Q ss_pred eEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCC
Q 003804 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI 143 (794)
Q Consensus 90 ~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~ 143 (794)
..+++|||||+.+ +..++...++.+|++++|+|+.+.. .+-..+++.+...|+
T Consensus 47 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~-~~~~~~~~~l~~~gi 106 (233)
T cd01896 47 AKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE-GHREILERELEGVGI 106 (233)
T ss_pred eEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch-hHHHHHHHHHHHcCc
Confidence 8899999999854 3345677899999999999998643 244455666655444
No 302
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.50 E-value=3.9e-07 Score=84.06 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=80.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc--cceEEEEeecchhhhhccccccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++.+| +|.+|+|||+|+-++- .... .|+. -.|+. ....+.. .+
T Consensus 9 fkllI---igDsgVGKssLl~rF~--ddtF----s~sY------------itTiGvDfkirTv~--------------i~ 53 (198)
T KOG0079|consen 9 FKLLI---IGDSGVGKSSLLLRFA--DDTF----SGSY------------ITTIGVDFKIRTVD--------------IN 53 (198)
T ss_pred HHHHe---ecCCcccHHHHHHHHh--hccc----ccce------------EEEeeeeEEEEEee--------------cC
Confidence 45667 8999999999988873 2211 1210 01221 1111111 24
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc---CCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---RIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~---~~~~iv~iNKiD~~ 155 (794)
+...++.||||+|+..|...+....+...++++|.|.+.|-....-.-|-+-... .+|.++|.||.|.+
T Consensus 54 G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 54 GDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDP 125 (198)
T ss_pred CcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCc
Confidence 5678999999999999999999999999999999999999887776666443332 46889999999987
No 303
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.47 E-value=1.6e-06 Score=92.33 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=68.1
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|..|+|||||+|+|+...-.... ++ . +.|......+..+
T Consensus 36 ~~~~rIll---vGktGVGKSSliNsIlG~~v~~vs---------~f-~-----s~t~~~~~~~~~~-------------- 83 (313)
T TIGR00991 36 VSSLTILV---MGKGGVGKSSTVNSIIGERIATVS---------AF-Q-----SEGLRPMMVSRTR-------------- 83 (313)
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHhCCCccccc---------CC-C-----CcceeEEEEEEEE--------------
Confidence 45789999 999999999999999643321111 00 0 0111111222223
Q ss_pred CCCceEEEEEcCCCccchH---HHHHHhhh------ccCceEEEEeCCC-CcchhHHHHHHHHHh---c--CCccEEEEe
Q 003804 86 QGNEYLINLIDSPGHVDFS---SEVTAALR------ITDGALVVVDCIE-GVCVQTETVLRQALG---E--RIRPVLTVN 150 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~---~e~~~~l~------~~D~ailvvda~~-gv~~qt~~~~~~~~~---~--~~~~iv~iN 150 (794)
.+..+++|||||..+.. .+....++ ..|++++|.+... ......+.+++.+.. . -.+.|+++|
T Consensus 84 --~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfT 161 (313)
T TIGR00991 84 --AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLT 161 (313)
T ss_pred --CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEE
Confidence 37899999999987642 12222232 4788888844322 233343444444432 1 236889999
Q ss_pred cCccc
Q 003804 151 KMDRC 155 (794)
Q Consensus 151 KiD~~ 155 (794)
+.|..
T Consensus 162 h~d~~ 166 (313)
T TIGR00991 162 HAQFS 166 (313)
T ss_pred CCccC
Confidence 99965
No 304
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=5e-07 Score=99.28 Aligned_cols=108 Identities=28% Similarity=0.341 Sum_probs=84.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+++-|++ +|++|+|||||+.+|..+- +.+.-.|..--||+.+
T Consensus 68 PPfIvav---vGPpGtGKsTLirSlVrr~-------------tk~ti~~i~GPiTvvs---------------------- 109 (1077)
T COG5192 68 PPFIVAV---VGPPGTGKSTLIRSLVRRF-------------TKQTIDEIRGPITVVS---------------------- 109 (1077)
T ss_pred CCeEEEe---ecCCCCChhHHHHHHHHHH-------------HHhhhhccCCceEEee----------------------
Confidence 5678888 9999999999999996321 1111111122244432
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEE-EEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv-~iNKiD~~ 155 (794)
++..+|+|+.|| .| ...++.....+|.++|+||++-|....|.+.+..+..+|+|.|+ |++.+|+.
T Consensus 110 gK~RRiTflEcp--~D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 110 GKTRRITFLECP--SD-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred cceeEEEEEeCh--HH-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccc
Confidence 257899999999 34 45778888999999999999999999999999999999999885 89999986
No 305
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=1.4e-06 Score=79.86 Aligned_cols=113 Identities=18% Similarity=0.113 Sum_probs=81.9
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
+.+..+|.. +|-.++||||++-.|- .+..+.. -.|+..+.-++.|+
T Consensus 14 ~~KE~~ilm---lGLd~aGKTtiLyKLk--l~~~~~~-----------------ipTvGFnvetVtyk------------ 59 (180)
T KOG0071|consen 14 GNKEMRILM---LGLDAAGKTTILYKLK--LGQSVTT-----------------IPTVGFNVETVTYK------------ 59 (180)
T ss_pred CcccceEEE---EecccCCceehhhHHh--cCCCccc-----------------ccccceeEEEEEee------------
Confidence 345678888 8999999999998882 2221110 02444555555664
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC--cchhHHHHHHHHHh---cCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g--v~~qt~~~~~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+.++|++|.-|+.....-..+.+...-+.|+|+|+.+. ++..-.++.+.+.. ...+.+++.||-|++
T Consensus 60 ----N~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 60 ----NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLP 131 (180)
T ss_pred ----eeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence 89999999999999999999999999999999999865 33333344444422 345778999999998
No 306
>COG2262 HflX GTPases [General function prediction only]
Probab=98.39 E-value=1.2e-06 Score=94.76 Aligned_cols=113 Identities=26% Similarity=0.251 Sum_probs=77.8
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
...|++ +|-.|+|||||.|+|- |...+.+ -+.=.|.+.+...+.+.
T Consensus 192 ~p~vaL---vGYTNAGKSTL~N~LT-----------~~~~~~~-----d~LFATLdpttR~~~l~--------------- 237 (411)
T COG2262 192 IPLVAL---VGYTNAGKSTLFNALT-----------GADVYVA-----DQLFATLDPTTRRIELG--------------- 237 (411)
T ss_pred CCeEEE---EeeccccHHHHHHHHh-----------ccCeecc-----ccccccccCceeEEEeC---------------
Confidence 457888 9999999999999993 2211111 11224667777777775
Q ss_pred CceEEEEEcCCCccc---------hHHHHHHhhhccCceEEEEeCCCC-cchhHHHHHHHHH---hcCCccEEEEecCcc
Q 003804 88 NEYLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQAL---GERIRPVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~d---------f~~e~~~~l~~~D~ailvvda~~g-v~~qt~~~~~~~~---~~~~~~iv~iNKiD~ 154 (794)
++..+.+-||=|..+ |. .+..-...+|..+.|||+++. ...|-..+.+.+. ...+|+|+|.||+|+
T Consensus 238 ~g~~vlLtDTVGFI~~LP~~LV~AFk-sTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 238 DGRKVLLTDTVGFIRDLPHPLVEAFK-STLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred CCceEEEecCccCcccCChHHHHHHH-HHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 368899999999864 32 234445689999999999975 3333333433333 355799999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 317 ~ 317 (411)
T COG2262 317 L 317 (411)
T ss_pred c
Confidence 7
No 307
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.39 E-value=1.1e-06 Score=88.69 Aligned_cols=115 Identities=22% Similarity=0.256 Sum_probs=80.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++.+|++ +|..|+|||+|+-++++..= .-+ +--|+..+...-. ..+
T Consensus 2 ~~~kvvv---lG~~gVGKSal~~qf~~~~f-----------~~~-------y~ptied~y~k~~-------------~v~ 47 (196)
T KOG0395|consen 2 REYKVVV---LGAGGVGKSALTIQFLTGRF-----------VED-------YDPTIEDSYRKEL-------------TVD 47 (196)
T ss_pred CceEEEE---ECCCCCCcchheeeeccccc-----------ccc-------cCCCccccceEEE-------------EEC
Confidence 3578999 99999999999999843211 111 1123322111110 122
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHH----hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+....+.|+||+|..+|...-...++..||-++|.+.++--+.+... ++.++. ...+|+++|.||.|+.
T Consensus 48 ~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~ 121 (196)
T KOG0395|consen 48 GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE 121 (196)
T ss_pred CEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch
Confidence 34678889999999999999999999999999999999876665543 334442 3456999999999997
No 308
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.36 E-value=4.8e-06 Score=90.65 Aligned_cols=131 Identities=18% Similarity=0.228 Sum_probs=79.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCC--cccccCCceeecCChhhHhhhCccc---ccce---EEEEeecchhhhh
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGI--IAQEVAGDVRMTDTRQDEAERGITI---KSTG---ISLYYEMTDAALK 79 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~--i~~~~~G~~~~~D~~~~E~~rgiTi---~~~~---~~~~~~~~~~~~~ 79 (794)
.+.|++ +|++++|||||++++....-. +... ..+.|..|-.+.. ..|-|| +... -..+..
T Consensus 17 ~IyIGv---vGpvrtGKSTfIn~fm~q~VlP~i~~~-~~k~Ra~DELpqs-~~GktItTTePkfvP~kAvEI~------- 84 (492)
T TIGR02836 17 DIYIGV---VGPVRTGKSTFIKKFMELLVLPNISNE-YDKERAQDELPQS-AAGKTIMTTEPKFVPNEAVEIN------- 84 (492)
T ss_pred cEEEEE---EcCCCCChHHHHHHHHhhhccccccch-hHHhHHHhccCcC-CCCCCcccCCCccccCcceEEe-------
Confidence 477888 999999999999999654111 0000 0000111111111 013222 2211 011111
Q ss_pred ccccccCCCceEEEEEcCCCccc-------------------------hHHH----HHHhhh-ccCceEEEE-eCC----
Q 003804 80 SYRGERQGNEYLINLIDSPGHVD-------------------------FSSE----VTAALR-ITDGALVVV-DCI---- 124 (794)
Q Consensus 80 ~~~~~~~~~~~~inlIDTPGh~d-------------------------f~~e----~~~~l~-~~D~ailvv-da~---- 124 (794)
..++-...+-||||+|+.+ |... +...+. -+|.+|+|. |++
T Consensus 85 ----~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI 160 (492)
T TIGR02836 85 ----INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDI 160 (492)
T ss_pred ----ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccc
Confidence 1123356899999999754 2222 455666 899999999 886
Q ss_pred --CCcchhHHHHHHHHHhcCCccEEEEecCcc
Q 003804 125 --EGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (794)
Q Consensus 125 --~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~ 154 (794)
++.....++++..+.+.++|.++++||.|-
T Consensus 161 ~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 161 PREDYVEAEERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEEECcCC
Confidence 455666778889999999999999999994
No 309
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.36 E-value=4.4e-07 Score=92.39 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCccchHHH------HHHhhh--ccCceEEEEeCCCCcchhHHH--HH---HHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSE------VTAALR--ITDGALVVVDCIEGVCVQTET--VL---RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e------~~~~l~--~~D~ailvvda~~gv~~qt~~--~~---~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+.+.||||||+..-... +..++. .--.++.|||....-.+.|.. ++ ..+.+.++|.|++.||.|..
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 377999999999762211 222222 223577889987766666542 23 34467899999999999997
Q ss_pred hhccCCCHHHHHHHHHHHHHH
Q 003804 156 FLELQVDGEEAYQTFQKVIEN 176 (794)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~ 176 (794)
..++-..+-.-++.|++.+++
T Consensus 195 d~~fa~eWm~DfE~FqeAl~~ 215 (366)
T KOG1532|consen 195 DSEFALEWMTDFEAFQEALNE 215 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHHh
Confidence 444444455556677776664
No 310
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.34 E-value=2.1e-06 Score=78.87 Aligned_cols=114 Identities=20% Similarity=0.236 Sum_probs=80.5
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
..+.+++.+ +|-.++||||++..| .|+ |-+. --.|-..+..++.+.
T Consensus 14 t~rEirill---lGldnAGKTT~LKqL-----------~sE----D~~h----ltpT~GFn~k~v~~~------------ 59 (185)
T KOG0074|consen 14 TRREIRILL---LGLDNAGKTTFLKQL-----------KSE----DPRH----LTPTNGFNTKKVEYD------------ 59 (185)
T ss_pred CcceEEEEE---EecCCCcchhHHHHH-----------ccC----Chhh----ccccCCcceEEEeec------------
Confidence 356788888 999999999999999 332 0000 011333445555664
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh--HHH---HHHHHHhcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ--TET---VLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q--t~~---~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+++|++|.-|+.....-....+...|+.|+|||+++..... .+. +++......+|..++.||-|++
T Consensus 60 ---g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 60 ---GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred ---CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 3589999999999988888899999999999999988653221 122 2222233456888999999997
No 311
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.32 E-value=3.5e-06 Score=88.30 Aligned_cols=84 Identities=27% Similarity=0.334 Sum_probs=57.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
-.|++ +|.+.+|||||++.|- +.-+. .+. ..+ .|...-.--+.| +
T Consensus 64 a~v~l---VGfPsvGKStLL~~LT---nt~se--va~---y~F--------TTl~~VPG~l~Y----------------~ 108 (365)
T COG1163 64 ATVAL---VGFPSVGKSTLLNKLT---NTKSE--VAD---YPF--------TTLEPVPGMLEY----------------K 108 (365)
T ss_pred eEEEE---EcCCCccHHHHHHHHh---CCCcc--ccc---cCc--------eecccccceEee----------------c
Confidence 46788 9999999999999992 21111 111 111 133333333445 5
Q ss_pred ceEEEEEcCCCccch-------HHHHHHhhhccCceEEEEeCCCCc
Q 003804 89 EYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGV 127 (794)
Q Consensus 89 ~~~inlIDTPGh~df-------~~e~~~~l~~~D~ailvvda~~gv 127 (794)
+..|.|+|+||-..= -.++...+|.||.+++|+|+.+..
T Consensus 109 ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 109 GAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred CceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 899999999986431 246889999999999999998654
No 312
>PRK13768 GTPase; Provisional
Probab=98.32 E-value=1.5e-06 Score=91.67 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=47.4
Q ss_pred ceEEEEEcCCCccchHH---H---HHHhhhc--cCceEEEEeCCCCcchhHHHHHHHH-----HhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSS---E---VTAALRI--TDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~---e---~~~~l~~--~D~ailvvda~~gv~~qt~~~~~~~-----~~~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+.++.. . ..+.+.. ++++++|+|+..+..+.+....... ...++|+++++||+|+.
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 34789999999876432 1 2222332 8999999999988776664433222 25688999999999987
No 313
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=3.2e-06 Score=78.16 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=77.4
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
+++.| +|...+|||+++-+.+ +.+...-+ -+--||-.+... + |. +.+
T Consensus 22 fKlli---iGnssvGKTSfl~ry~-----------ddSFt~af---vsTvGidFKvKT--v-yr-------------~~k 68 (193)
T KOG0093|consen 22 FKLLI---IGNSSVGKTSFLFRYA-----------DDSFTSAF---VSTVGIDFKVKT--V-YR-------------SDK 68 (193)
T ss_pred eeEEE---EccCCccchhhhHHhh-----------ccccccce---eeeeeeeEEEeE--e-ee-------------ccc
Confidence 58888 9999999999988873 21110000 000122222221 1 11 224
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-H---HhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~---~~~~~~~iv~iNKiD~~ 155 (794)
-.++.+|||.|+..+..-+...+|.++|.||+.|.+..-.....+-|-- + .-.+.|+|++.||.|+.
T Consensus 69 RiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 69 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD 139 (193)
T ss_pred EEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc
Confidence 5789999999999999889999999999999999987655544444422 2 23577999999999986
No 314
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.29 E-value=9.6e-07 Score=86.77 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCccchH----HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCC-ccEEEEecC
Q 003804 89 EYLINLIDSPGHVDFS----SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKM 152 (794)
Q Consensus 89 ~~~inlIDTPGh~df~----~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~-~~iv~iNKi 152 (794)
...+.||||||..+.. ..+...+..+|.+|+|+++......+....|.+...... ..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3568999999985422 347778899999999999998776665555555555444 566788885
No 315
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.28 E-value=8.6e-07 Score=84.40 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=82.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..+++.| +|..++||||++.+. ..|+..++ -.++...|+... .|-+.
T Consensus 19 ~aiK~vi---vGng~VGKssmiqry--CkgifTkd-ykktIgvdfler----qi~v~----------------------- 65 (246)
T KOG4252|consen 19 RAIKFVI---VGNGSVGKSSMIQRY--CKGIFTKD-YKKTIGVDFLER----QIKVL----------------------- 65 (246)
T ss_pred hhEEEEE---ECCCccchHHHHHHH--hccccccc-cccccchhhhhH----HHHhh-----------------------
Confidence 3578888 999999999999987 34444332 122334444322 12111
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-H--HHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-Q--ALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~--~~~~~~~~iv~iNKiD~~ 155 (794)
....++-+|||.|+.+|..-+...+|.|.+++||++.++--......-|+ . .....+|.+++-||||++
T Consensus 66 ~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 66 IEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 12567788999999999999999999999999999999866554444443 2 234688999999999987
No 316
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.27 E-value=3e-06 Score=92.62 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=62.9
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
+..+++||| +|..|+|||||+|+|- |.=+. +.| .-..|.+ ..+.....|.
T Consensus 32 ~~~~l~IaV---~G~sGsGKSSfINalr---Gl~~~-d~~----------aA~tGv~-etT~~~~~Y~------------ 81 (376)
T PF05049_consen 32 DNAPLNIAV---TGESGSGKSSFINALR---GLGHE-DEG----------AAPTGVV-ETTMEPTPYP------------ 81 (376)
T ss_dssp HH--EEEEE---EESTTSSHHHHHHHHT---T--TT-STT----------S--SSSH-SCCTS-EEEE------------
T ss_pred hcCceEEEE---ECCCCCCHHHHHHHHh---CCCCC-CcC----------cCCCCCC-cCCCCCeeCC------------
Confidence 346789999 9999999999999992 11110 011 1112221 1111111222
Q ss_pred cCCCceEEEEEcCCCcc--chHHH---HHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccch
Q 003804 85 RQGNEYLINLIDSPGHV--DFSSE---VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~--df~~e---~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~ 156 (794)
..+--.+.+||.||.. +|..+ -...+...|..|++.+.. .......+++.+...++|..+|-+|+|..+
T Consensus 82 -~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r--f~~ndv~La~~i~~~gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 82 -HPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER--FTENDVQLAKEIQRMGKKFYFVRTKVDSDL 155 (376)
T ss_dssp --SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHH
T ss_pred -CCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC--CchhhHHHHHHHHHcCCcEEEEEecccccH
Confidence 1123368999999963 33322 112466788766665533 445556678889999999999999999854
No 317
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.26 E-value=3.9e-07 Score=94.88 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=36.8
Q ss_pred EEEEEcCCCccchHHH------HHHhhh--ccCceEEEEeCCCCcchhHH-H----HHHHHHhcCCccEEEEecCccc
Q 003804 91 LINLIDSPGHVDFSSE------VTAALR--ITDGALVVVDCIEGVCVQTE-T----VLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 91 ~inlIDTPGh~df~~e------~~~~l~--~~D~ailvvda~~gv~~qt~-~----~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+.|+||||+.+|... ....+. ..=++|+++|+..-..+... . .+....+.++|.|.++||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 7889999999886543 333333 23468888998743332221 1 1123345799999999999998
No 318
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.22 E-value=1.8e-05 Score=81.23 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=67.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|.+ +|..|+||||+.|.||...-.-.. .+ ....|.........+ .
T Consensus 1 l~Ill---lG~tGsGKSs~~N~ilg~~~f~~~--~~------------~~~~t~~~~~~~~~~----------------~ 47 (212)
T PF04548_consen 1 LRILL---LGKTGSGKSSLGNSILGKEVFKSG--SS------------AKSVTQECQKYSGEV----------------D 47 (212)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHTSS-SS----TT------------TSS--SS-EEEEEEE----------------T
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcccceeec--cc------------cCCcccccceeeeee----------------c
Confidence 46788 999999999999999644332111 00 111233333333344 3
Q ss_pred ceEEEEEcCCCccc-------hHHHHHHhh----hccCceEEEEeCCCCcchhHHHHHHHHHh-cC----CccEEEEecC
Q 003804 89 EYLINLIDSPGHVD-------FSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALG-ER----IRPVLTVNKM 152 (794)
Q Consensus 89 ~~~inlIDTPGh~d-------f~~e~~~~l----~~~D~ailvvda~~gv~~qt~~~~~~~~~-~~----~~~iv~iNKi 152 (794)
+..+++|||||..| ...++..++ ...+++|+|+... ..+...+..++.+.. .| .-.||+++..
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 78999999999654 223444433 3478899999988 666666666665543 22 1467888888
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|..
T Consensus 127 d~~ 129 (212)
T PF04548_consen 127 DEL 129 (212)
T ss_dssp GGG
T ss_pred ccc
Confidence 876
No 319
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.18 E-value=5.1e-06 Score=90.22 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=43.9
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH--HHHHHHhcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~--~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+..++.+.||||+|... .++. ....+|.+++|++...|-.-|... +++.+ -++|+||+|+.
T Consensus 144 ~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaDl~ 207 (332)
T PRK09435 144 CEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKADGD 207 (332)
T ss_pred HhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhccc
Confidence 344678999999999874 3332 577899999998866665554432 33332 38999999987
No 320
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.15 E-value=1.1e-05 Score=68.35 Aligned_cols=71 Identities=27% Similarity=0.284 Sum_probs=55.9
Q ss_pred EEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEec
Q 003804 369 MLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG 448 (794)
Q Consensus 369 va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~g 448 (794)
.++|++++.++..|. ++++||++|+|++|+.+++.+.+ . ....+|.+|+..+ .+++++.|||++++.+
T Consensus 2 ~~~v~~~~~~~~~g~-v~~~rv~~G~l~~g~~v~~~~~~--~-----~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~ 69 (83)
T cd01342 2 RALVFKVFKDKGRGT-VATGRVESGTLKKGDKVRVGPGG--G-----GVKGKVKSLKRFK----GEVDEAVAGDIVGIVL 69 (83)
T ss_pred eeEEEEEEEeCCceE-EEEEEEeeCEEecCCEEEEecCC--c-----eeEEEEeEeEecC----ceeceecCCCEEEEEE
Confidence 567888888776665 99999999999999999986421 1 1236888888765 6789999999999987
Q ss_pred ccc
Q 003804 449 LDQ 451 (794)
Q Consensus 449 l~~ 451 (794)
.+.
T Consensus 70 ~~~ 72 (83)
T cd01342 70 KDK 72 (83)
T ss_pred ccc
Confidence 654
No 321
>PTZ00099 rab6; Provisional
Probab=98.14 E-value=5.2e-06 Score=82.54 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....++||||||+..|.......++.+|++|+|+|++.....+....|. .+.. ..+|.++|.||+|+.
T Consensus 26 ~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 34688999999999999998899999999999999999865544443342 2222 346778999999985
No 322
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=1.2e-05 Score=76.12 Aligned_cols=116 Identities=18% Similarity=0.118 Sum_probs=77.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.-++.+ +|--|+|||||+..| .... .| +...|...+.-.+..
T Consensus 19 K~gKllF---lGLDNAGKTTLLHML--KdDr-----l~------------qhvPTlHPTSE~l~I--------------- 61 (193)
T KOG0077|consen 19 KFGKLLF---LGLDNAGKTTLLHML--KDDR-----LG------------QHVPTLHPTSEELSI--------------- 61 (193)
T ss_pred cCceEEE---EeecCCchhhHHHHH--cccc-----cc------------ccCCCcCCChHHhee---------------
Confidence 4557888 999999999999988 1111 11 111233222222222
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHHH----HhcCCccEEEEecCccchhccCC
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA----LGERIRPVLTVNKMDRCFLELQV 161 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~~----~~~~~~~iv~iNKiD~~~~~~~~ 161 (794)
.+.+++-+|.-||..-..-...++..+|++|.+|||.+--..+. +..++.+ .-.++|.++..||+|++ ++
T Consensus 62 -g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p----~a 136 (193)
T KOG0077|consen 62 -GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP----YA 136 (193)
T ss_pred -cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC----Cc
Confidence 27789999999998766667778889999999999987543332 2222222 23578999999999999 77
Q ss_pred CHH
Q 003804 162 DGE 164 (794)
Q Consensus 162 ~~~ 164 (794)
..+
T Consensus 137 ~se 139 (193)
T KOG0077|consen 137 ASE 139 (193)
T ss_pred ccH
Confidence 533
No 323
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.12 E-value=2.7e-05 Score=83.14 Aligned_cols=132 Identities=16% Similarity=0.226 Sum_probs=73.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
-.++|-+ +|..|.|||||++.|+........ ...+.......+..++..... ... -+
T Consensus 3 ~~fnImV---vG~sG~GKTTFIntL~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~--~l~------------e~ 59 (281)
T PF00735_consen 3 FNFNIMV---VGESGLGKTTFINTLFNSDIISED------SSIPPPSASISRTLEIEERTV--ELE------------EN 59 (281)
T ss_dssp EEEEEEE---EECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEE--EEE------------ET
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHHhccccccc------ccccccccccccccceeeEEE--Eec------------cC
Confidence 3578888 999999999999999653322111 000111111122233332222 222 12
Q ss_pred CCceEEEEEcCCCccchH-------------HH-----HHHhh---------hccCceEEEEeCC-CCcchhHHHHHHHH
Q 003804 87 GNEYLINLIDSPGHVDFS-------------SE-----VTAAL---------RITDGALVVVDCI-EGVCVQTETVLRQA 138 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~-------------~e-----~~~~l---------~~~D~ailvvda~-~gv~~qt~~~~~~~ 138 (794)
+-...+++|||||+.|.. .+ +..-. ...|+|+..++++ .|+.+.....++.+
T Consensus 60 ~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L 139 (281)
T PF00735_consen 60 GVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL 139 (281)
T ss_dssp CEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH
T ss_pred CcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh
Confidence 235789999999976421 11 11011 1358899999986 68887777776664
Q ss_pred HhcCCccEEEEecCccchhccCCCHHHHHH
Q 003804 139 LGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (794)
Q Consensus 139 ~~~~~~~iv~iNKiD~~~~~~~~~~~~~~~ 168 (794)
...+.+|-||.|.|.. +++++..
T Consensus 140 -s~~vNvIPvIaKaD~l------t~~el~~ 162 (281)
T PF00735_consen 140 -SKRVNVIPVIAKADTL------TPEELQA 162 (281)
T ss_dssp -TTTSEEEEEESTGGGS-------HHHHHH
T ss_pred -cccccEEeEEeccccc------CHHHHHH
Confidence 4457888899999987 5555543
No 324
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.09 E-value=2.3e-05 Score=82.00 Aligned_cols=108 Identities=24% Similarity=0.246 Sum_probs=69.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.|.+ +|-+++|||||+++|-...-. .|...+ .|+....-...|. ..
T Consensus 198 dvGL---VG~PNAGKSTLL~als~AKpk-----Va~YaF-----------TTL~P~iG~v~yd---------------df 243 (366)
T KOG1489|consen 198 DVGL---VGFPNAGKSTLLNALSRAKPK-----VAHYAF-----------TTLRPHIGTVNYD---------------DF 243 (366)
T ss_pred ccce---ecCCCCcHHHHHHHhhccCCc-----ccccce-----------eeeccccceeecc---------------cc
Confidence 5556 999999999999999321111 221111 2444444444443 13
Q ss_pred eEEEEEcCCCcc-----------chHHHHHHhhhccCceEEEEeCCCC---cchhH-HHHHHHHHhc-----CCccEEEE
Q 003804 90 YLINLIDSPGHV-----------DFSSEVTAALRITDGALVVVDCIEG---VCVQT-ETVLRQALGE-----RIRPVLTV 149 (794)
Q Consensus 90 ~~inlIDTPGh~-----------df~~e~~~~l~~~D~ailvvda~~g---v~~qt-~~~~~~~~~~-----~~~~iv~i 149 (794)
..+.+-|-||-. +|...+++ |+..++|||...+ -.+|. +.+|..+..+ ..|.++|+
T Consensus 244 ~q~tVADiPGiI~GAh~nkGlG~~FLrHiER----~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVa 319 (366)
T KOG1489|consen 244 SQITVADIPGIIEGAHMNKGLGYKFLRHIER----CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVA 319 (366)
T ss_pred ceeEeccCccccccccccCcccHHHHHHHHh----hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEE
Confidence 349999999954 36655555 5999999999987 33443 3445554432 34788999
Q ss_pred ecCccc
Q 003804 150 NKMDRC 155 (794)
Q Consensus 150 NKiD~~ 155 (794)
||||.+
T Consensus 320 NKiD~~ 325 (366)
T KOG1489|consen 320 NKIDLP 325 (366)
T ss_pred eccCch
Confidence 999986
No 325
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=6.3e-06 Score=78.70 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=82.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHH-HcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~-~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
..++|.| +|.-++||||+++++=. +++.. |. ++ +. +--.|++....+....
T Consensus 16 e~y~vlI---lgldnAGKttfLe~~Kt~~~~~~-----~~---l~--~~--ki~~tvgLnig~i~v~------------- 67 (197)
T KOG0076|consen 16 EDYSVLI---LGLDNAGKTTFLEALKTDFSKAY-----GG---LN--PS--KITPTVGLNIGTIEVC------------- 67 (197)
T ss_pred hhhhhee---eccccCCchhHHHHHHHHHHhhh-----cC---CC--HH--Heecccceeecceeec-------------
Confidence 4578888 99999999999999821 11111 10 00 00 0112444444444442
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-----cchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----VCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-----v~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+++||--|+....+-....+..|+++|.||||.+. ...+-+.+..+-...|+|+++.+||-|+.
T Consensus 68 ---~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 68 ---NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQ 139 (197)
T ss_pred ---cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhh
Confidence 67899999999999998899999999999999999973 22233445555566899999999999997
No 326
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=1.1e-05 Score=78.16 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=86.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
.++++++ +|..|.||||+..+.+ .| ..|+..-.|+....-.+.+.. +
T Consensus 9 ~~fklvl---vGdgg~gKtt~vkr~l----------tg--------eFe~~y~at~Gv~~~pl~f~t------------n 55 (216)
T KOG0096|consen 9 LTFKLVL---VGDGGTGKTTFVKRHL----------TG--------EFEKTYPATLGVEVHPLLFDT------------N 55 (216)
T ss_pred ceEEEEE---ecCCcccccchhhhhh----------cc--------cceecccCcceeEEeeeeeec------------c
Confidence 5789999 9999999999999985 33 233444456666555555542 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-H--HhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A--LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~--~~~~~~~iv~iNKiD~~ 155 (794)
.+..+++.|||.|...|.+---...-..-+|++++|...-++.+...-|.. + ...++|++++.||.|-.
T Consensus 56 ~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 56 RGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred cCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 235899999999999988777677778889999999998877776655532 2 13568999999999975
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=1.7e-05 Score=87.39 Aligned_cols=68 Identities=19% Similarity=0.129 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCcc---chHHHHHHhhhccCc---eEEEEeCCCCcchhHHHHHHHHHhcCCcc-------EEEEecCcc
Q 003804 88 NEYLINLIDSPGHV---DFSSEVTAALRITDG---ALVVVDCIEGVCVQTETVLRQALGERIRP-------VLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~---df~~e~~~~l~~~D~---ailvvda~~gv~~qt~~~~~~~~~~~~~~-------iv~iNKiD~ 154 (794)
.++.+.||||||.. ++..+....+..++. .+||++++.+...-+..++......++|. =++++|+|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 35688999999976 455556666655554 49999999987776666666554443332 378899997
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 294 t 294 (374)
T PRK14722 294 A 294 (374)
T ss_pred C
Confidence 6
No 328
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.94 E-value=0.0001 Score=84.98 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=64.5
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|..|+|||||+|+|+......... . ..+ |.........+
T Consensus 118 slrIvL---VGKTGVGKSSLINSILGekvf~vss-~-------------~~~-TTr~~ei~~~i---------------- 163 (763)
T TIGR00993 118 SLNILV---LGKSGVGKSATINSIFGEVKFSTDA-F-------------GMG-TTSVQEIEGLV---------------- 163 (763)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhccccccccC-C-------------CCC-ceEEEEEEEEE----------------
Confidence 467888 9999999999999997543322211 0 011 11111112222
Q ss_pred CceEEEEEcCCCccchH------HHH----HHhhh--ccCceEEEEeCCCC-cchhHHHHHHHHH---hcCC--ccEEEE
Q 003804 88 NEYLINLIDSPGHVDFS------SEV----TAALR--ITDGALVVVDCIEG-VCVQTETVLRQAL---GERI--RPVLTV 149 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~------~e~----~~~l~--~~D~ailvvda~~g-v~~qt~~~~~~~~---~~~~--~~iv~i 149 (794)
.+..+++|||||..+.. .++ ...+. .+|++|+|+..... .......+++.+. ..++ -.||+.
T Consensus 164 dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVF 243 (763)
T TIGR00993 164 QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL 243 (763)
T ss_pred CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEE
Confidence 26789999999987632 222 22333 36777776654322 2112333444432 2222 578999
Q ss_pred ecCccc
Q 003804 150 NKMDRC 155 (794)
Q Consensus 150 NKiD~~ 155 (794)
+..|..
T Consensus 244 ThgD~l 249 (763)
T TIGR00993 244 THAASA 249 (763)
T ss_pred eCCccC
Confidence 999987
No 329
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=5.4e-05 Score=69.35 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=72.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++-.| +|.-|+|||.|+..+-...=+.+- | .-|.+.....-++. .+.
T Consensus 12 fkyii---igdmgvgkscllhqftekkfmadc------------p----htigvefgtriiev--------------sgq 58 (215)
T KOG0097|consen 12 FKYII---IGDMGVGKSCLLHQFTEKKFMADC------------P----HTIGVEFGTRIIEV--------------SGQ 58 (215)
T ss_pred EEEEE---EccccccHHHHHHHHHHHHHhhcC------------C----cccceecceeEEEe--------------cCc
Confidence 55666 899999999999887322111110 0 01112222222222 335
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHhc---CCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE---RIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~~---~~~~iv~iNKiD~~ 155 (794)
..++.+|||+|+..|..-+....|.+-||++|.|.+......-...|- -+... +..++++.||.|+.
T Consensus 59 kiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 59 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred EEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 788999999999999999999999999999999988654333333332 12222 22345778999986
No 330
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.88 E-value=7.4e-05 Score=76.35 Aligned_cols=134 Identities=14% Similarity=0.107 Sum_probs=66.8
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccc--cCCce-eecCChhhHhhhCccc---ccceEEEEeecchhhhhcc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDV-RMTDTRQDEAERGITI---KSTGISLYYEMTDAALKSY 81 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~--~~G~~-~~~D~~~~E~~rgiTi---~~~~~~~~~~~~~~~~~~~ 81 (794)
..+|++ +|+.|+|||||+++|+...+...+. ..|.. ...|....+ +.|..+ ....+. ...... -...+
T Consensus 22 ~~~i~~---~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic-~~~~~~-~~~~l 95 (207)
T TIGR00073 22 LVVLNF---MSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKEC-HLDAHM-VAHAL 95 (207)
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcc-cCChHH-HHHHH
Confidence 467888 9999999999999999764421110 01111 112222111 222211 111100 000000 00011
Q ss_pred ccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 82 ~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
. .....+..+.||+|.|...... ......+..+.|+|+..+...... .....+.+.++++||+|+.
T Consensus 96 ~-~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~~~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 96 E-DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK----YPGMFKEADLIVINKADLA 161 (207)
T ss_pred H-HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh----hHhHHhhCCEEEEEHHHcc
Confidence 1 1112345788999999321111 111234556789999876543222 2223456889999999997
No 331
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.87 E-value=0.00012 Score=63.26 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=53.2
Q ss_pred CeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE
Q 003804 367 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (794)
Q Consensus 367 plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai 446 (794)
||.+.|..++..+ .|. +..+||.+|++++||.|++++.+ . ..+|++|... ..++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~-~g~-vv~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~si~~~----~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GGT-VVSGKVESGSIQKGDTLLVMPSK----E-----SVEVKSIYVD----DEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CCc-EEEEEEeeeEEeCCCEEEEeCCC----c-----EEEEEEEEEC----CeECCEECCCCEEEE
Confidence 5677777777656 665 89999999999999999987532 1 2578888653 478999999999985
Q ss_pred --eccc
Q 003804 447 --VGLD 450 (794)
Q Consensus 447 --~gl~ 450 (794)
.+++
T Consensus 66 ~l~~~~ 71 (83)
T cd03698 66 KLKGID 71 (83)
T ss_pred EECCCC
Confidence 4544
No 332
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.86 E-value=4.6e-05 Score=69.00 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=63.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
++++ +|++|+|||||+.+| .|... .--..-.++|+ +
T Consensus 3 ri~~---vG~~gcGKTtL~q~L-----------~G~~~--------------lykKTQAve~~----------------d 38 (148)
T COG4917 3 RIAF---VGQVGCGKTTLFQSL-----------YGNDT--------------LYKKTQAVEFN----------------D 38 (148)
T ss_pred eeEE---ecccccCchhHHHHh-----------hcchh--------------hhcccceeecc----------------C
Confidence 5677 999999999999999 44210 00001123443 1
Q ss_pred eEEEEEcCCC----ccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPG----h~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
. -.||||| |..+.......+..+|..++|-.++++-+.-.-... .-...|.|-+|+|.|+.
T Consensus 39 ~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~---~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 39 K--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFL---DIGVKKVIGVVTKADLA 103 (148)
T ss_pred c--cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccc---cccccceEEEEeccccc
Confidence 1 2499999 455555667777889999999999887443322221 12234677899999997
No 333
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.84 E-value=4.3e-05 Score=78.62 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=79.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
...+++ +|..++|||+|++.++......+. ++. ..|-|.. +.. |.
T Consensus 136 ~pe~~~---~g~SNVGKSSLln~~~r~k~~~~t---~k~----------K~g~Tq~---in~-f~--------------- 180 (320)
T KOG2486|consen 136 RPELAF---YGRSNVGKSSLLNDLVRVKNIADT---SKS----------KNGKTQA---INH-FH--------------- 180 (320)
T ss_pred Cceeee---ecCCcccHHHHHhhhhhhhhhhhh---cCC----------CCcccee---eee-ee---------------
Confidence 367888 999999999999999654332211 100 1122222 222 21
Q ss_pred CceEEEEEcCCCc----------cchHHHHHHhhh---ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCcc
Q 003804 88 NEYLINLIDSPGH----------VDFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh----------~df~~e~~~~l~---~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~ 154 (794)
-+.++.++|.||+ .||..-+...+- ..=-+.+.||+.-++++..-..+..+-+.++|+.+|.||||+
T Consensus 181 v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK 260 (320)
T KOG2486|consen 181 VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDK 260 (320)
T ss_pred ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhh
Confidence 2678999999992 244444444442 344578899999999999988889999999999999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 261 ~ 261 (320)
T KOG2486|consen 261 Q 261 (320)
T ss_pred h
Confidence 6
No 334
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.83 E-value=0.00016 Score=71.97 Aligned_cols=66 Identities=23% Similarity=0.180 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+.+.+|||||... ..+..++..+|.+++|+.+...-.......++.+...+++..+++||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 578999999997643 466778899999999999987666677788888888888888999999964
No 335
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.82 E-value=0.00014 Score=63.98 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=62.3
Q ss_pred CCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEE
Q 003804 365 EGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 444 (794)
Q Consensus 365 ~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ 444 (794)
+.||.+.|..++..+..|. +..+||.+|+++.||.|++++.+ . ..+|.+|... ..++++|.|||.+
T Consensus 2 ~~p~r~~V~~vf~~~g~g~-vv~G~v~~G~i~~gd~v~i~P~~----~-----~~~V~sI~~~----~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGT-VPVGRVETGVLKPGMVVTFAPAG----V-----TGEVKSVEMH----HEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCceE-EEEEEEecceeecCCEEEECCCC----c-----EEEEEEEEEC----CcCcCEECCCCEE
Confidence 3688888888887666675 88999999999999999987532 1 2588888753 4678999999998
Q ss_pred EEe--ccccccccce-eeecC
Q 003804 445 AMV--GLDQYITKNA-TLTNE 462 (794)
Q Consensus 445 ai~--gl~~~~~~tg-Tl~~~ 462 (794)
++. +++....+.| .||+.
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~~ 88 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGDS 88 (91)
T ss_pred EEEECCCCHHHcCCcCEEccC
Confidence 874 5433333556 55554
No 336
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.77 E-value=0.00011 Score=72.78 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCccchHHHHHHhh------hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l------~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.++.+.+|||||...+..+....+ ...|++++|+|+..+.... ...+......+ ..-+++||+|..
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCC-CCEEEEECCcCC
Confidence 467788999999864433332222 2489999999997543222 33444433445 345888999986
No 337
>PTZ00258 GTP-binding protein; Provisional
Probab=97.75 E-value=8.1e-05 Score=82.49 Aligned_cols=98 Identities=17% Similarity=0.144 Sum_probs=57.8
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecch-hhhhccccccC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQ 86 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~ 86 (794)
..+|+| +|.+++|||||.++|.... ... + ++ .+.|+......+.+.... ..+....+...
T Consensus 21 ~~kvgI---VG~PNvGKSTLfnaLt~~~-~~v----~-----n~------pftTi~p~~g~v~~~d~r~~~l~~~~~~~~ 81 (390)
T PTZ00258 21 NLKMGI---VGLPNVGKSTTFNALCKQQ-VPA----E-----NF------PFCTIDPNTARVNVPDERFDWLCKHFKPKS 81 (390)
T ss_pred CcEEEE---ECCCCCChHHHHHHHhcCc-ccc----c-----CC------CCCcccceEEEEecccchhhHHHHHcCCcc
Confidence 468888 9999999999999993221 111 1 00 223444444444443100 00000011111
Q ss_pred CCceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCC
Q 003804 87 GNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 124 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~ 124 (794)
.-...+.++||||-.. +.......++.+|++++|||+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1245689999999542 3345677889999999999984
No 338
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.73 E-value=1.2e-05 Score=73.00 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=57.8
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH---hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~---~~~~~~iv~iNKiD~~ 155 (794)
+++..++.+|||+|+..|.+-+-...|.+|+.+++.|....-....-+.| .++. ++.+..+++.||.|+.
T Consensus 43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 45678999999999999999999999999999999999877666666555 3333 4556788999999984
No 339
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.71 E-value=0.00032 Score=65.63 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=82.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (794)
.+.++|.+ .|.-++|||.+++.|+|-+..+... ..-||.-.. .+++..
T Consensus 7 Gk~~kVvV---cG~k~VGKTaileQl~yg~~~~~~e----------------~~pTiEDiY~~svet~------------ 55 (198)
T KOG3883|consen 7 GKVCKVVV---CGMKSVGKTAILEQLLYGNHVPGTE----------------LHPTIEDIYVASVETD------------ 55 (198)
T ss_pred CcceEEEE---ECCccccHHHHHHHHHhccCCCCCc----------------cccchhhheeEeeecC------------
Confidence 35678888 9999999999999999877665432 112332221 222221
Q ss_pred cCCCceEEEEEcCCCccchHHHHH-HhhhccCceEEEEeCCCCcchhHHHHHHHHH-----hcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVT-AALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~-~~l~~~D~ailvvda~~gv~~qt~~~~~~~~-----~~~~~~iv~iNKiD~~ 155 (794)
.+-...+.|-||.|-.+.-.|.. +++..+|+-+||.|..+--..|-..++..-. +..+|++++.||.|+.
T Consensus 56 -rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 56 -RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred -CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 11235688999999988755554 5668899999999999887777766664332 2346888999999995
No 340
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.71 E-value=6.7e-05 Score=72.35 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=41.7
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD 153 (794)
.++.+.||||||.. ......++.+|-+|+|+....+-.....+. .-...--+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~----~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA----GIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh----hHhhhcCEEEEeCCC
Confidence 47899999999964 344569999999999998874443333322 112234589999998
No 341
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0004 Score=73.87 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=56.9
Q ss_pred eEEEEEcCCCc-----------cchHHHHHHhhhccCceEEEEeCCC-CcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGH-----------VDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh-----------~df~~e~~~~l~~~D~ailvvda~~-gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..|++|||||. -||.+-...-+..+|.++|++|+-. .+...+++++.++..+.-++=||+||.|.+
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQV 224 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEecccccc
Confidence 47999999995 3687777788889999999999975 578889999999888877888999999987
No 342
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.69 E-value=0.00042 Score=73.66 Aligned_cols=106 Identities=21% Similarity=0.135 Sum_probs=65.7
Q ss_pred cccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCceEEE
Q 003804 14 GPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 93 (794)
Q Consensus 14 ~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 93 (794)
|. +|-+++|||||+..+-...=. .+ ||.- .|+..+.-.+... .+..|.
T Consensus 163 GL-VG~PNaGKSTlls~vS~AkPK-----Ia-----dYpF------TTL~PnLGvV~~~---------------~~~sfv 210 (369)
T COG0536 163 GL-VGLPNAGKSTLLSAVSAAKPK-----IA-----DYPF------TTLVPNLGVVRVD---------------GGESFV 210 (369)
T ss_pred cc-ccCCCCcHHHHHHHHhhcCCc-----cc-----CCcc------ccccCcccEEEec---------------CCCcEE
Confidence 44 999999999999999321111 11 1110 1332222222221 256799
Q ss_pred EEcCCCcc-----------chHHHHHHhhhccCceEEEEeCCCCc----chhHHHHHHHHHhc-----CCccEEEEecCc
Q 003804 94 LIDSPGHV-----------DFSSEVTAALRITDGALVVVDCIEGV----CVQTETVLRQALGE-----RIRPVLTVNKMD 153 (794)
Q Consensus 94 lIDTPGh~-----------df~~e~~~~l~~~D~ailvvda~~gv----~~qt~~~~~~~~~~-----~~~~iv~iNKiD 153 (794)
+-|-||-. +|...++++ -..+.|||.+.-- ..+-..++..+.++ +.|.+|++||||
T Consensus 211 ~ADIPGLIEGAs~G~GLG~~FLrHIERt----~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 211 VADIPGLIEGASEGVGLGLRFLRHIERT----RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred EecCcccccccccCCCccHHHHHHHHhh----heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 99999964 477776665 6678899987432 23334455555443 568999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
.+
T Consensus 287 ~~ 288 (369)
T COG0536 287 LP 288 (369)
T ss_pred CC
Confidence 76
No 343
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.69 E-value=0.00027 Score=66.80 Aligned_cols=113 Identities=21% Similarity=0.233 Sum_probs=75.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCccc---ccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~---~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
.+++.+ +|..-+|||+|+..+ +.|.... +-.| .|+. .|-|-+.
T Consensus 8 qfrliv---igdstvgkssll~~f--t~gkfaelsdptvg----vdff----arlie~~--------------------- 53 (213)
T KOG0091|consen 8 QFRLIV---IGDSTVGKSSLLRYF--TEGKFAELSDPTVG----VDFF----ARLIELR--------------------- 53 (213)
T ss_pred EEEEEE---EcCCcccHHHHHHHH--hcCcccccCCCccc----hHHH----HHHHhcC---------------------
Confidence 456777 899999999999887 4443221 1112 1111 1111111
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCC-----c-cEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-----R-PVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~-----~-~iv~iNKiD~~ 155 (794)
.+...++.||||+|+..|.+-+....|.+=|+++|.|.+..-...-.+.|-.-.+..+ + ..+|..|.|+.
T Consensus 54 -pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 54 -PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred -CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 1124678999999999999999999999999999999997766665666632222222 2 33788999986
No 344
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.67 E-value=7.3e-05 Score=80.94 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=42.1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..++.+.||||||...- ....+..+|.++++.+...|..-+.. ... -.++|.++++||+|+.
T Consensus 123 ~~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~el~~~---~~~-l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 123 DAAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDDLQGI---KAG-LMEIADIYVVNKADGE 185 (300)
T ss_pred HhCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHHHHHH---HHH-HhhhccEEEEEccccc
Confidence 345889999999996532 23356778998888765544322211 111 1357889999999997
No 345
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.66 E-value=8.3e-05 Score=78.84 Aligned_cols=90 Identities=22% Similarity=0.190 Sum_probs=52.4
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcc---ccccCCCceEEE
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY---RGERQGNEYLIN 93 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~in 93 (794)
+|.+++|||||.++|....-.+. + -.+.|++.....+.+.. .+.+.+ .+....-...+.
T Consensus 4 vG~PN~GKSTLfn~Lt~~~~~~~----------n------~pftTi~p~~g~v~v~d--~r~~~l~~~~~~~k~~~~~i~ 65 (274)
T cd01900 4 VGLPNVGKSTLFNALTKAGAEAA----------N------YPFCTIEPNVGIVPVPD--ERLDKLAEIVKPKKIVPATIE 65 (274)
T ss_pred eCCCCCcHHHHHHHHhCCCCccc----------c------ccccchhceeeeEEecc--chhhhHHHHhCCceeeeeEEE
Confidence 99999999999999932221111 0 02345544444444431 001000 001111134699
Q ss_pred EEcCCCccc-------hHHHHHHhhhccCceEEEEeCC
Q 003804 94 LIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 124 (794)
Q Consensus 94 lIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~ 124 (794)
++||||-.+ +.......++.+|+++.|||+.
T Consensus 66 lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 66 FVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 999999543 3335667789999999999985
No 346
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.64 E-value=0.00034 Score=69.20 Aligned_cols=63 Identities=22% Similarity=0.144 Sum_probs=50.4
Q ss_pred EEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccc
Q 003804 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (794)
Q Consensus 91 ~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~ 155 (794)
.+.+|||||..+. ....++..+|.+|+|+++...-...+...++.+...+.+. .+++|++|..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 6899999987553 5677889999999999998777677777777777666654 4899999865
No 347
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.64 E-value=0.00015 Score=79.54 Aligned_cols=95 Identities=21% Similarity=0.208 Sum_probs=56.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcc---cccc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY---RGER 85 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~---~~~~ 85 (794)
++|+| +|.+++|||||.++|....-.+ + + -.+.|++.....+.+... +.+.+ .++.
T Consensus 3 ~~vgI---VG~PNvGKSTLfnaLt~~~~~v-----~-----n------ypftTi~p~~G~~~v~d~--r~~~l~~~~~p~ 61 (364)
T PRK09601 3 LKCGI---VGLPNVGKSTLFNALTKAGAEA-----A-----N------YPFCTIEPNVGVVPVPDP--RLDKLAEIVKPK 61 (364)
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCCCCee-----c-----c------cccccccceEEEEEeccc--cchhhHHhcCCc
Confidence 56778 9999999999999994322111 1 1 123455544444443310 01000 1111
Q ss_pred CCCceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCC
Q 003804 86 QGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 124 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~ 124 (794)
..-...+.|+||||-.+ +.......++.+|+++.|||+.
T Consensus 62 ~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 62 KIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred cccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11234699999999543 3335667789999999999995
No 348
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.61 E-value=0.00072 Score=72.74 Aligned_cols=124 Identities=19% Similarity=0.306 Sum_probs=76.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|-+ +|..|.||||+++.|+...- .+. .+ .-+..+.-...++.|..+...+.- ++
T Consensus 23 ~f~im~---~G~sG~GKttfiNtL~~~~l-~~~--~~---~~~~~~~~~~~~~~i~~~~~~l~e--------------~~ 79 (373)
T COG5019 23 DFTIMV---VGESGLGKTTFINTLFGTSL-VDE--TE---IDDIRAEGTSPTLEIKITKAELEE--------------DG 79 (373)
T ss_pred ceEEEE---ecCCCCchhHHHHhhhHhhc-cCC--CC---ccCcccccCCcceEEEeeeeeeec--------------CC
Confidence 578888 99999999999999987621 111 00 001111102333334333333221 22
Q ss_pred CceEEEEEcCCCccchHHH--------------HHHhh-------h-------ccCceEEEEeCC-CCcchhHHHHHHHH
Q 003804 88 NEYLINLIDSPGHVDFSSE--------------VTAAL-------R-------ITDGALVVVDCI-EGVCVQTETVLRQA 138 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e--------------~~~~l-------~-------~~D~ailvvda~-~gv~~qt~~~~~~~ 138 (794)
-...+|+|||||..||... -...+ | .+++|+.-+-++ +|+.+......+.+
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~l 159 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRL 159 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 3567999999998875432 01111 1 257899989876 78999888777665
Q ss_pred HhcCCccEEEEecCccc
Q 003804 139 LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 139 ~~~~~~~iv~iNKiD~~ 155 (794)
. ..+-.|=||-|.|..
T Consensus 160 s-~~vNlIPVI~KaD~l 175 (373)
T COG5019 160 S-KRVNLIPVIAKADTL 175 (373)
T ss_pred h-cccCeeeeeeccccC
Confidence 3 345667789999976
No 349
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.59 E-value=0.00028 Score=79.07 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCccc----hHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCC-ccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~d----f~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~-~~iv~iNKiD~~ 155 (794)
.++.+.||||||... ...|+....+ ..|-++||+|+.-|-... ...+... ..+ +.-+++||+|..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~--~~a~~F~-~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE--AQAKAFK-DSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH--HHHHHHH-hccCCcEEEEECccCC
Confidence 468899999999764 3344444333 357899999998774331 1222221 223 456899999975
No 350
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.59 E-value=0.00026 Score=69.04 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=40.3
Q ss_pred ceEEEEEcCCCccchHHH--------HHHhhhccCceEEEEeCCCCcchh--HHHHHHHHHhcCCccEEEEecCcc
Q 003804 89 EYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQ--TETVLRQALGERIRPVLTVNKMDR 154 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e--------~~~~l~~~D~ailvvda~~gv~~q--t~~~~~~~~~~~~~~iv~iNKiD~ 154 (794)
...+.+|||||-.+-..- ...+.-.+|+++.+||+......- ......|+.... ++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad---~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC---EEEEecccC
Confidence 467789999998652211 223445689999999987543211 122335554443 789999996
No 351
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.52 E-value=0.00027 Score=70.81 Aligned_cols=119 Identities=21% Similarity=0.227 Sum_probs=78.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
-+|.+ +|..|+|||++=..+...-..- +-+.-|-||+....++.|- .
T Consensus 5 kKvlL---MGrsGsGKsSmrsiiF~ny~a~---------------D~~rlg~tidveHsh~Rfl---------------G 51 (295)
T KOG3886|consen 5 KKVLL---MGRSGSGKSSMRSIIFANYIAR---------------DTRRLGATIDVEHSHVRFL---------------G 51 (295)
T ss_pred ceEEE---eccCCCCccccchhhhhhhhhh---------------hhhccCCcceeeehhhhhh---------------h
Confidence 46777 9999999999866553111111 1123356777776666664 3
Q ss_pred ceEEEEEcCCCccchHHHHHH-----hhhccCceEEEEeCCCCcchhH----HHHHHHHHhc--CCccEEEEecCccchh
Q 003804 89 EYLINLIDSPGHVDFSSEVTA-----ALRITDGALVVVDCIEGVCVQT----ETVLRQALGE--RIRPVLTVNKMDRCFL 157 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~-----~l~~~D~ailvvda~~gv~~qt----~~~~~~~~~~--~~~~iv~iNKiD~~~~ 157 (794)
+..+|+||+-|+..|+.+..+ .++..+..+.|+|+..--.... +..++...+. ..+..+++.|||+.
T Consensus 52 nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv-- 129 (295)
T KOG3886|consen 52 NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV-- 129 (295)
T ss_pred hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc--
Confidence 578999999999888776544 5678999999999875422222 2233333332 23566889999998
Q ss_pred ccCCCHH
Q 003804 158 ELQVDGE 164 (794)
Q Consensus 158 ~~~~~~~ 164 (794)
..+..
T Consensus 130 --~~d~r 134 (295)
T KOG3886|consen 130 --QEDAR 134 (295)
T ss_pred --ccchH
Confidence 66533
No 352
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.50 E-value=0.00035 Score=70.85 Aligned_cols=58 Identities=24% Similarity=0.372 Sum_probs=36.8
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc--EEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP--VLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~--iv~iNKiD~~ 155 (794)
+....+|+|-|-. ...... ...+|.+|+|+|+.+|...+.. . ..++.. ++++||+|+.
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLA 150 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhcc
Confidence 4567889999931 111111 2247999999999988663321 0 123333 8999999997
No 353
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.48 E-value=0.00025 Score=77.04 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCc----cchHH---HHHHhhhccCceEEEEeCCC
Q 003804 88 NEYLINLIDSPGH----VDFSS---EVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 88 ~~~~inlIDTPGh----~df~~---e~~~~l~~~D~ailvvda~~ 125 (794)
+...+.+|||||. ..+.+ .....++.||++++|||+..
T Consensus 67 ~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 67 RYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 3467999999997 33333 45567999999999999974
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.47 E-value=0.00051 Score=73.14 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCccchHHHHH-------Hhhh-----ccCceEEEEeCCCCcchhHHHHHHHHHhcCC-ccEEEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVT-------AALR-----ITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~-------~~l~-----~~D~ailvvda~~gv~~qt~~~~~~~~~~~~-~~iv~iNKiD~ 154 (794)
+++.+.||||||......... +... .+|..++|+|+..|-. +........ ..+ ..-+++||+|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~-~~~~~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFN-EAVGLTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHH-hhCCCCEEEEEccCC
Confidence 568899999999864333322 2222 3899999999986532 221111111 122 34589999997
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 230 ~ 230 (272)
T TIGR00064 230 T 230 (272)
T ss_pred C
Confidence 5
No 355
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0011 Score=71.77 Aligned_cols=123 Identities=17% Similarity=0.288 Sum_probs=75.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.+++-+ +|..|.|||||+|+|+...- .|. +..+..+.+..+..++......+. .++
T Consensus 21 ~ftlmv---vG~sGlGKsTfiNsLf~~~l------~~~-~~~~~~~~~~~~t~~i~~~~~~ie--------------e~g 76 (366)
T KOG2655|consen 21 DFTLMV---VGESGLGKSTFINSLFLTDL------SGN-REVPGASERIKETVEIESTKVEIE--------------ENG 76 (366)
T ss_pred ceEEEE---ecCCCccHHHHHHHHHhhhc------cCC-cccCCcccCccccceeeeeeeeec--------------CCC
Confidence 477777 99999999999999976511 111 001112222222333333332222 122
Q ss_pred CceEEEEEcCCCccchHHH--------------HHH-----------hhh--ccCceEEEEeCC-CCcchhHHHHHHHHH
Q 003804 88 NEYLINLIDSPGHVDFSSE--------------VTA-----------ALR--ITDGALVVVDCI-EGVCVQTETVLRQAL 139 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e--------------~~~-----------~l~--~~D~ailvvda~-~gv~~qt~~~~~~~~ 139 (794)
-...+|+|||||..|+... -.. ... .+++|+.-|.+. +|+.+......+.+
T Consensus 77 ~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l- 155 (366)
T KOG2655|consen 77 VKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL- 155 (366)
T ss_pred eEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH-
Confidence 3567899999998774321 111 111 467899999876 67888887766654
Q ss_pred hcCCccEEEEecCccc
Q 003804 140 GERIRPVLTVNKMDRC 155 (794)
Q Consensus 140 ~~~~~~iv~iNKiD~~ 155 (794)
..++..|=||-|.|..
T Consensus 156 ~~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 156 SKKVNLIPVIAKADTL 171 (366)
T ss_pred hccccccceeeccccC
Confidence 4467778889999976
No 356
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.42 E-value=0.00026 Score=71.63 Aligned_cols=66 Identities=24% Similarity=0.226 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCccchHH----HHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSS----EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~----e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+++.+.||||||...... ++..-++ ..+-++||+|+..+-... ..+.......++. =++++|+|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL-EQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTC-EEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH-HHHHHHhhcccCc-eEEEEeecCC
Confidence 457799999999765433 3322222 457799999999774332 2333333333433 4669999986
No 357
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00049 Score=75.54 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCccc----hHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcC-Cc-cEEEEecCccc
Q 003804 89 EYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~d----f~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~-~~-~iv~iNKiD~~ 155 (794)
++.+.||||||... ...+....++ ..|-++||+|++-+- ..+..++..++ ++ -=++++|+|-.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~----~d~~~i~~~F~~~~idglI~TKLDET 390 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS----KDMIEIITNFKDIHIDGIVFTKFDET 390 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh----HHHHHHHHHhcCCCCCEEEEEcccCC
Confidence 57899999999754 3344444443 346789999987432 22223333322 23 23889999986
No 358
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.41 E-value=0.0012 Score=62.84 Aligned_cols=79 Identities=14% Similarity=0.226 Sum_probs=53.6
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc--CCccEEEEecCccchhccCCCHHHHH
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCFLELQVDGEEAY 167 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~--~~~~iv~iNKiD~~~~~~~~~~~~~~ 167 (794)
+.+.+||||+..+ .....++..+|.+++|+++...-...+...++.+... ..+..+++|+.+.. ...++.+
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-----~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-----KEGKKVF 117 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-----HHHHHHH
Confidence 6789999998754 4557889999999999999865555556666655433 23556999999754 2234445
Q ss_pred HHHHHHHH
Q 003804 168 QTFQKVIE 175 (794)
Q Consensus 168 ~~~~~~~~ 175 (794)
+++.+..+
T Consensus 118 ~~~~~~~~ 125 (139)
T cd02038 118 KRLSNVSN 125 (139)
T ss_pred HHHHHHHH
Confidence 55544443
No 359
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.40 E-value=0.00047 Score=77.84 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.6
Q ss_pred eEEEEEcCCCccchHHHH------HHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc--CCcc-EEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEV------TAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRP-VLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~------~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~--~~~~-iv~iNKiD~~ 155 (794)
+.+.||||||......+. ...+..+|.+++|+|+..|- ..++++... .++. -+++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 478999999976544332 24455789999999998872 223333332 3444 3889999964
No 360
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.40 E-value=0.00039 Score=77.84 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCC
Q 003804 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 89 ~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (794)
...+.++||||-.+ +.......++.+|++++|||+..
T Consensus 71 ~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 46789999999532 33356677999999999999974
No 361
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.40 E-value=0.0014 Score=56.32 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=48.7
Q ss_pred CeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE
Q 003804 367 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (794)
Q Consensus 367 plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai 446 (794)
||.+.|..++... |. +..+||.+|+++.||.|++.+.+ . ..+|.+|... ..++++|.|||.+++
T Consensus 1 plr~~I~~v~~~~--g~-vv~G~v~~G~i~~G~~v~i~P~~----~-----~~~V~si~~~----~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKDM--GT-VVLGKVESGTIKKGDKLLVMPNK----T-----QVEVLSIYNE----DVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEcC--CE-EEEEEEeeeEEecCCEEEEeCCC----c-----EEEEEEEEEC----CEECCEECCCCEEEE
Confidence 4556666665432 55 89999999999999999986532 2 2578887642 478999999999988
Q ss_pred e
Q 003804 447 V 447 (794)
Q Consensus 447 ~ 447 (794)
.
T Consensus 65 ~ 65 (82)
T cd04089 65 R 65 (82)
T ss_pred E
Confidence 4
No 362
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.39 E-value=0.00016 Score=70.35 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
.++|++ +|.+|+|||||+|+|+...
T Consensus 102 ~~~v~~---~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGF---IGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEE---EeCCCCChHHHHHHHhcCC
Confidence 467888 9999999999999996543
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.39 E-value=0.00053 Score=74.54 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCccch----HHHHHHhhh--------ccCceEEEEeCCCCcchhHHHHHHHHHhcCC-ccEEEEecCcc
Q 003804 88 NEYLINLIDSPGHVDF----SSEVTAALR--------ITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df----~~e~~~~l~--------~~D~ailvvda~~gv~~qt~~~~~~~~~~~~-~~iv~iNKiD~ 154 (794)
+++.+.||||||.... +.|.....+ ..|..++|+|++.|-..-. .. +... ..+ +.-+++||+|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a-~~f~-~~~~~~giIlTKlD~ 271 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QA-KAFH-EAVGLTGIILTKLDG 271 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HH-HHHH-hhCCCCEEEEECCCC
Confidence 5788999999997542 234333333 3577899999997643222 11 1111 122 34599999996
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 272 t 272 (318)
T PRK10416 272 T 272 (318)
T ss_pred C
Confidence 5
No 364
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.36 E-value=0.00015 Score=70.23 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.4
Q ss_pred ccCCCCChhHHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~ 34 (794)
+|+.|+|||||+|+|+..
T Consensus 41 ~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 41 LGQSGVGKSSLINALLPE 58 (161)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 899999999999999754
No 365
>PRK14974 cell division protein FtsY; Provisional
Probab=97.35 E-value=0.00063 Score=74.27 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCccc----hHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhc--CC-ccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGE--RI-RPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~d----f~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~--~~-~~iv~iNKiD~~ 155 (794)
.++.+.||||||... +..+...-.+ ..|..++|+|+..|- ..++++... .+ .--+++||+|..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 456799999999763 3444333222 468999999998762 222333321 12 345899999985
No 366
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.00024 Score=65.86 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=72.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
...+-+ +|-.|+||||..-+| ..|..+. ...|+..+...+.|
T Consensus 18 e~rili---lgldGaGkttIlyrl--qvgevvt-----------------tkPtigfnve~v~y---------------- 59 (182)
T KOG0072|consen 18 EMRILI---LGLDGAGKTTILYRL--QVGEVVT-----------------TKPTIGFNVETVPY---------------- 59 (182)
T ss_pred ceEEEE---eeccCCCeeEEEEEc--ccCcccc-----------------cCCCCCcCcccccc----------------
Confidence 345556 788888888876555 2222211 11244444444444
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh--HHHHHHHHHh---cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ--TETVLRQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q--t~~~~~~~~~---~~~~~iv~iNKiD~~ 155 (794)
++-+++++|.-|......-....+...|.+|.|||+.+-.+-. -.++...+.+ .+-..++|.||+|..
T Consensus 60 KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~ 132 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYS 132 (182)
T ss_pred ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccch
Confidence 4889999999999888888888899999999999998753322 2223222222 334667899999987
No 367
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.33 E-value=0.00054 Score=77.21 Aligned_cols=66 Identities=23% Similarity=0.401 Sum_probs=38.5
Q ss_pred CCceEEEEEcCCCccch----HHHHHH--hhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDF----SSEVTA--ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df----~~e~~~--~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
..++.+.||||||.... ..++.. .....|.+++|+|+..|- ......+.. ...++.- +++||+|..
T Consensus 180 ~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq--~~~~~a~~f-~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ--DAVNTAKTF-NERLGLTGVVLTKLDGD 252 (428)
T ss_pred hcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH--HHHHHHHHH-HhhCCCCEEEEeCccCc
Confidence 35678999999996432 222211 122478899999998541 222222221 1234433 789999954
No 368
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.33 E-value=0.00063 Score=76.73 Aligned_cols=121 Identities=19% Similarity=0.144 Sum_probs=78.0
Q ss_pred CCccc-eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhh
Q 003804 1 MSSYC-FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (794)
Q Consensus 1 ~~~~~-~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 79 (794)
|++-. .+.++|++ +|.-|+|||||+-+|+...=.-.- -+.++ -|||=+..
T Consensus 1 ~~~~~t~kdVRIvl---iGD~G~GKtSLImSL~~eef~~~V-----P~rl~--------~i~IPadv------------- 51 (625)
T KOG1707|consen 1 MSDDETLKDVRIVL---IGDEGVGKTSLIMSLLEEEFVDAV-----PRRLP--------RILIPADV------------- 51 (625)
T ss_pred CCCccCccceEEEE---ECCCCccHHHHHHHHHhhhccccc-----cccCC--------ccccCCcc-------------
Confidence 44443 45789999 999999999999999643221000 01111 13332111
Q ss_pred ccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCC-----CcchhHHHHHHHHH--hcCCccEEEEecC
Q 003804 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----GVCVQTETVLRQAL--GERIRPVLTVNKM 152 (794)
Q Consensus 80 ~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~-----gv~~qt~~~~~~~~--~~~~~~iv~iNKi 152 (794)
........++||+-..+-...+..-++.||.+.+|.++.+ +++..=..++++.. -.++|+|+|.||.
T Consensus 52 ------tPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~ 125 (625)
T KOG1707|consen 52 ------TPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKS 125 (625)
T ss_pred ------CcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeecc
Confidence 1124458899999877766677888999999999997664 33332233444432 2567999999999
Q ss_pred ccch
Q 003804 153 DRCF 156 (794)
Q Consensus 153 D~~~ 156 (794)
|...
T Consensus 126 d~~~ 129 (625)
T KOG1707|consen 126 DNGD 129 (625)
T ss_pred CCcc
Confidence 9863
No 369
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.31 E-value=0.00027 Score=73.02 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH--HHHHHHhcCCccEEEEecCccchhccCCCHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~--~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~ 164 (794)
.-++.+.||-|-|--. .|+. -...+|..++|+-+..|..-|..+ +++. .=|+||||.|+. ++ +
T Consensus 119 aaG~D~IiiETVGvGQ--sE~~-I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD~~----gA--~ 183 (266)
T PF03308_consen 119 AAGFDVIIIETVGVGQ--SEVD-IADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKADRP----GA--D 183 (266)
T ss_dssp HTT-SEEEEEEESSST--HHHH-HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--SHH----HH--H
T ss_pred HcCCCEEEEeCCCCCc--cHHH-HHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCChH----HH--H
Confidence 3578899999998654 2332 367899999999999888777654 3333 348999999998 54 3
Q ss_pred HHHHHHHHHHH
Q 003804 165 EAYQTFQKVIE 175 (794)
Q Consensus 165 ~~~~~~~~~~~ 175 (794)
.+...++..+.
T Consensus 184 ~~~~~l~~~l~ 194 (266)
T PF03308_consen 184 RTVRDLRSMLH 194 (266)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44555555544
No 370
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0015 Score=74.92 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=82.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCccc------------ccCCc--eeecCChhhHhhhCc-----------
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ------------EVAGD--VRMTDTRQDEAERGI----------- 60 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~------------~~~G~--~~~~D~~~~E~~rgi----------- 60 (794)
.+..+|+| .|...+||||++++||...=.-.. ...|. ...+|- ..|..--.
T Consensus 107 r~~mKV~i---fGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~-s~ek~d~~ti~~~~haL~~ 182 (749)
T KOG0448|consen 107 RRHMKVAI---FGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEG-SEEKIDMKTINQLAHALKP 182 (749)
T ss_pred hcccEEEE---eCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCC-CcccccHHHHhHHHHhcCc
Confidence 35679999 999999999999999875422111 01222 111111 00110000
Q ss_pred ---ccccceEEEEeecchhhhhccccccCCCceEEEEEcCCCc---cchHHHHHHhhhccCceEEEEeCCCCcchhHHHH
Q 003804 61 ---TIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGH---VDFSSEVTAALRITDGALVVVDCIEGVCVQTETV 134 (794)
Q Consensus 61 ---Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh---~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~ 134 (794)
+-..+.+.+.|+.. .|.+-.+ .+.+||.||- ..+...+..-.-.+|..|+|++|-.-.+-..+..
T Consensus 183 ~~~~~~~sLlrV~~p~~-------~csLLrn--DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~F 253 (749)
T KOG0448|consen 183 DKDLGAGSLLRVFWPDD-------KCSLLRN--DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQF 253 (749)
T ss_pred ccccCcceEEEEEecCc-------cchhhhc--cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHH
Confidence 12234455566521 1122112 6889999995 3466777777788999999999876655444555
Q ss_pred HHHHHhcCCccE-EEEecCccc
Q 003804 135 LRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 135 ~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
++.+.+. +|.| |+.||+|..
T Consensus 254 f~~vs~~-KpniFIlnnkwDas 274 (749)
T KOG0448|consen 254 FHKVSEE-KPNIFILNNKWDAS 274 (749)
T ss_pred HHHhhcc-CCcEEEEechhhhh
Confidence 5555444 6766 678899986
No 371
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.28 E-value=0.0012 Score=65.05 Aligned_cols=66 Identities=18% Similarity=0.052 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCccchHHHHHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
.++.+.+||||+... .+....+ ..+|.+++|+.+..--...+...++.+.+.+.+.+ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 478899999999753 3334343 68999999999887777788888899888898876 889999864
No 372
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.28 E-value=0.0011 Score=71.83 Aligned_cols=150 Identities=24% Similarity=0.208 Sum_probs=82.7
Q ss_pred ccCCCCChhHHHHHHHHHcC-----CcccccCCceeecC---ChhhHhhhCcccccceEEEEeecch-hhhhccccccCC
Q 003804 17 ANSTFAGKSTLTDSLVAAAG-----IIAQEVAGDVRMTD---TRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQG 87 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g-----~i~~~~~G~~~~~D---~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~ 87 (794)
-|=-|||||||+++||.... .|.+ +.|+. -.| .....-+.-..+...++.+...... ..+..+.. ..
T Consensus 7 tGFLGsGKTTlL~~lL~~~~g~kiAVIVN-EfGEv-gID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~-~~- 82 (323)
T COG0523 7 TGFLGSGKTTLLNHLLANRDGKKIAVIVN-EFGEV-GIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR-RR- 82 (323)
T ss_pred eecCCCCHHHHHHHHHhccCCCcEEEEEe-cCccc-cccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh-cc-
Confidence 47789999999999997654 1111 13321 111 1111111122333344443322111 11111122 12
Q ss_pred CceEEEEEcCCCccc-------hHH-HHHHhhhccCceEEEEeCCCCcchhH---HHHHHHHHhcCCccEEEEecCccch
Q 003804 88 NEYLINLIDSPGHVD-------FSS-EVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGERIRPVLTVNKMDRCF 156 (794)
Q Consensus 88 ~~~~inlIDTPGh~d-------f~~-e~~~~l~~~D~ailvvda~~gv~~qt---~~~~~~~~~~~~~~iv~iNKiD~~~ 156 (794)
......+|-|-|-.+ |.. ......-..|++|-||||........ .....|+.... ++++||.|+.
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD---~ivlNK~Dlv- 158 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD---VIVLNKTDLV- 158 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc---EEEEecccCC-
Confidence 236677899999765 222 23334446799999999997655332 33445555444 8999999998
Q ss_pred hccCCCHHHHHHHHHHHHHHhhhh
Q 003804 157 LELQVDGEEAYQTFQKVIENANVI 180 (794)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~ 180 (794)
+.++ .+.++..+.++|..
T Consensus 159 -----~~~~-l~~l~~~l~~lnp~ 176 (323)
T COG0523 159 -----DAEE-LEALEARLRKLNPR 176 (323)
T ss_pred -----CHHH-HHHHHHHHHHhCCC
Confidence 5444 66677777776643
No 373
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.23 E-value=0.00031 Score=70.01 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=50.3
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHH-HHHHh--cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
++.+.+.||||.|+.||..-..-+++.+|..+++++...--.... ..-| ..+.. .++|+|+|.+|.|+-
T Consensus 50 g~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 50 GKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred CCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 567889999999999998755567889999998888765433332 2223 22222 468999999999985
No 374
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.00022 Score=67.03 Aligned_cols=67 Identities=27% Similarity=0.192 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH----hcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~----~~~~~~iv~iNKiD~~ 155 (794)
..++.||||+|+..|.+-+..-.|.|-|-+|++|-+..-..-..+-| .|+. .++--+|++.||.|+.
T Consensus 66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~ 137 (219)
T KOG0081|consen 66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE 137 (219)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh
Confidence 35678999999999999999999999999999998865544444444 3332 2343467899999997
No 375
>PRK10867 signal recognition particle protein; Provisional
Probab=97.17 E-value=0.0011 Score=74.76 Aligned_cols=64 Identities=27% Similarity=0.391 Sum_probs=38.5
Q ss_pred CCceEEEEEcCCCccc----hHHHHHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHh--cCCcc-EEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVD----FSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALG--ERIRP-VLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d----f~~e~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~--~~~~~-iv~iNKiD~~ 155 (794)
..++.+.||||||... ...+...-. ...|.+++|+|+..| | ...+++.. ..++. -+++||+|-.
T Consensus 181 ~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred hcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 3567899999999643 333322222 246788999999754 2 12233322 23443 3888999964
No 376
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.11 E-value=0.00053 Score=67.87 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.+.|++ +|.+++|||||+++|+.
T Consensus 117 ~~~~~~---vG~pnvGKSslin~l~~ 139 (172)
T cd04178 117 SITVGV---VGFPNVGKSSLINSLKR 139 (172)
T ss_pred CcEEEE---EcCCCCCHHHHHHHHhC
Confidence 368888 99999999999999964
No 377
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.10 E-value=0.003 Score=59.37 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=79.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|.+ +|....|||||.-... |. -.| ...++..|+..--..+++. +
T Consensus 20 slkv~l---lGD~qiGKTs~mvkYV-----------~~--~~d-e~~~q~~GvN~mdkt~~i~----------------~ 66 (205)
T KOG1673|consen 20 SLKVGL---LGDAQIGKTSLMVKYV-----------QN--EYD-EEYTQTLGVNFMDKTVSIR----------------G 66 (205)
T ss_pred EEEEEe---ecccccCceeeehhhh-----------cc--hhH-HHHHHHhCccceeeEEEec----------------c
Confidence 567777 9999999999977662 21 001 1223344443333333222 1
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHhcCC--ccEEEEecCccch
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGERI--RPVLTVNKMDRCF 156 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~~~~--~~iv~iNKiD~~~ 156 (794)
-...+.+||.-|..+|.....-+-..+-++++++|-+...+-....-| +|+...+. -+|++.+|.|..+
T Consensus 67 t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi 138 (205)
T KOG1673|consen 67 TDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFI 138 (205)
T ss_pred eEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhh
Confidence 256788999999999998888887888888999998876555554444 77777665 4679999999864
No 378
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0037 Score=71.35 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCccchHHHHH------HhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVT------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~------~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.++.+.||||||......... .+.. ....++|+++..+..... .+++..... .+.-+++||+|..
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 357899999999754322211 1222 345788899886533322 233333322 2456999999985
No 379
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0016 Score=71.49 Aligned_cols=64 Identities=22% Similarity=0.057 Sum_probs=35.9
Q ss_pred CceEEEEEcCCCccc----hHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcC-Cc-cEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~d----f~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~-~~-~iv~iNKiD~~ 155 (794)
+++.+.||||||... ...++..... ..|..++|+++.. ..+ .+...+..+. ++ --+++||+|..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~--d~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSA--DVMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHH--HHHHHHHhcCcCCCCEEEEEcccCC
Confidence 357899999999843 3334333333 2356677777632 221 1222222222 32 34889999986
No 380
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.05 E-value=0.0042 Score=54.05 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=46.9
Q ss_pred EEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 372 VSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 372 VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
|..++..+..|. +..+||.+|++++||.+++.+.+ .+ .+...+|..|.. ...++++|.|||.+++.
T Consensus 5 I~~vf~v~g~Gt-Vv~G~v~~G~v~~g~~v~~~P~~--~g---~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~ 70 (87)
T cd03694 5 IDEIYSVPGVGT-VVGGTVSKGVIRLGDTLLLGPDQ--DG---SFRPVTVKSIHR----NRSPVRVVRAGQSASLA 70 (87)
T ss_pred EEeEEEcCCcce-EEEEEEecCEEeCCCEEEECCCC--CC---CEeEEEEEEEEE----CCeECCEECCCCEEEEE
Confidence 333333355676 89999999999999999986531 01 112367888764 36779999999998873
No 381
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.00 E-value=0.00095 Score=64.80 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
...+++ +|++++|||||+++|+...
T Consensus 100 ~~~~~~---~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 100 SITVGV---IGYPNVGKSSVINALLNKL 124 (155)
T ss_pred CcEEEE---EccCCCCHHHHHHHHHccc
Confidence 456788 9999999999999997543
No 382
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=96.99 E-value=0.0012 Score=73.02 Aligned_cols=68 Identities=26% Similarity=0.296 Sum_probs=41.7
Q ss_pred CCceEEEEEcCCCccch------HHH--HHHhhhcc-CceEEEEeCCC--C--cchhHHHHHHHHH--hcCCccEEEEec
Q 003804 87 GNEYLINLIDSPGHVDF------SSE--VTAALRIT-DGALVVVDCIE--G--VCVQTETVLRQAL--GERIRPVLTVNK 151 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df------~~e--~~~~l~~~-D~ailvvda~~--g--v~~qt~~~~~~~~--~~~~~~iv~iNK 151 (794)
++-.+|.+|||||..|= .-| .+.|+.-. -+++++.|-++ | +..|- .++..+. -.+.|.|+|+||
T Consensus 212 ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 212 YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeec
Confidence 34668999999996551 112 33444433 35677888764 3 33332 2334332 246789999999
Q ss_pred Cccc
Q 003804 152 MDRC 155 (794)
Q Consensus 152 iD~~ 155 (794)
+|..
T Consensus 291 ~D~m 294 (620)
T KOG1490|consen 291 IDAM 294 (620)
T ss_pred cccc
Confidence 9986
No 383
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.99 E-value=0.00087 Score=63.99 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
++++ +|.+|+|||||+++|+.
T Consensus 85 ~~~~---~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGL---VGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEE---ECCCCCCHHHHHHHHhC
Confidence 6777 99999999999999963
No 384
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.99 E-value=0.0019 Score=61.64 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=44.1
Q ss_pred HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc--CCccEEEEecCccc
Q 003804 105 SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 105 ~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~--~~~~iv~iNKiD~~ 155 (794)
+++.+++..+|.+++|+|+.++...+...+.+.+... ++|.++++||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 5788999999999999999998887777777776655 88999999999986
No 385
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.97 E-value=0.0014 Score=65.00 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=72.3
Q ss_pred ccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc--------eEEEEeecch----------hhh
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--------GISLYYEMTD----------AAL 78 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~--------~~~~~~~~~~----------~~~ 78 (794)
+|+.||||||.+.++....-.+.+. -..-.+|...+--..-.|++.. .--+.+..++ .++
T Consensus 9 ~GpAgSGKSTyC~~~~~h~e~~gRs--~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~Nl 86 (273)
T KOG1534|consen 9 MGPAGSGKSTYCSSMYEHCETVGRS--VHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLENL 86 (273)
T ss_pred EccCCCCcchHHHHHHHHHHhhCce--eEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHHHHH
Confidence 7999999999999997655443221 0011233222222222222211 1111111111 111
Q ss_pred hccccccCCCceEEEEEcCCCccc------hHHHHHHhhhccC---ceEEEEeCCCCcc-----hhHHHHHHHHHhcCCc
Q 003804 79 KSYRGERQGNEYLINLIDSPGHVD------FSSEVTAALRITD---GALVVVDCIEGVC-----VQTETVLRQALGERIR 144 (794)
Q Consensus 79 ~~~~~~~~~~~~~inlIDTPGh~d------f~~e~~~~l~~~D---~ailvvda~~gv~-----~qt~~~~~~~~~~~~~ 144 (794)
+-+.....+-.-.+.++||||+.. -.....+.+.+-+ +++.++|+.--+. ......+..+....+|
T Consensus 87 dwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P 166 (273)
T KOG1534|consen 87 DWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVP 166 (273)
T ss_pred HHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 111222233344577899999654 4556667776644 5777777753211 1122234455677899
Q ss_pred cEEEEecCccc
Q 003804 145 PVLTVNKMDRC 155 (794)
Q Consensus 145 ~iv~iNKiD~~ 155 (794)
.|=+++|||+.
T Consensus 167 ~INvlsKMDLl 177 (273)
T KOG1534|consen 167 HINVLSKMDLL 177 (273)
T ss_pred chhhhhHHHHh
Confidence 99999999997
No 386
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.95 E-value=0.0029 Score=65.70 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=46.9
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH------hcCCccEEEEecCc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL------GERIRPVLTVNKMD 153 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~------~~~~~~iv~iNKiD 153 (794)
+.+.+.||||||+.+ ..+..++..+|.+|+.+.+..-....+...+..+. ..+++..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999875 55777899999999999887544444444443322 34667779999987
No 387
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=96.94 E-value=0.0043 Score=54.02 Aligned_cols=64 Identities=19% Similarity=0.372 Sum_probs=45.8
Q ss_pred EEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 372 VSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 372 VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
|..++..+..|. +..+||.+|+++.||.|.+++.+. +. ..+|.+|.. +..++++|.|||.+++.
T Consensus 5 V~~v~~~~g~G~-vv~G~v~~G~v~~gd~v~~~p~~~--~~-----~~~V~si~~----~~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 5 IEDVFSIPGRGT-VVTGRIERGTIKVGDEVEIVGFGE--TL-----KTTVTGIEM----FRKTLDEAEAGDNVGVL 68 (87)
T ss_pred EEEEEeCCCcEE-EEEEEECCCCCccCCEEEEeCCCC--Cc-----eEEEEEEEE----CCcCCCEECCCCEEEEE
Confidence 333333345565 889999999999999999875321 11 257888764 35678999999999884
No 388
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.91 E-value=0.0024 Score=64.71 Aligned_cols=68 Identities=24% Similarity=0.232 Sum_probs=48.2
Q ss_pred cCCCceEEEEEcCC-CccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccc
Q 003804 85 RQGNEYLINLIDSP-GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTP-Gh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~ 155 (794)
...+.+.+.++||= |-.=|. ....+.+|.+|+|+|++.---...+++-+.+.+.+++. .+++||+|..
T Consensus 129 l~~~~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 129 LILNRYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred HhcccCcEEEEecccchhhhc---cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 34455788899985 433344 23456789999999998554455567778888889654 4899999854
No 389
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.90 E-value=0.0031 Score=57.07 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=45.2
Q ss_pred EEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCC----ccEEEEec
Q 003804 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI----RPVLTVNK 151 (794)
Q Consensus 91 ~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~----~~iv~iNK 151 (794)
.+.+||||+..+ .....++..+|.+++|+++...-...+...++.+.+.+. +..+++|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 688999999765 445678899999999999987766677777777666554 34478885
No 390
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0023 Score=71.23 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCccchHH----HHHHhhhc-----cCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSS----EVTAALRI-----TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~----e~~~~l~~-----~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+++.+.||||||...... ++..-++. ..-.+||+||+.|-... ..+++.-...+ .-=++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCC-CCEEEEEcccCC
Confidence 567889999999753222 22222222 23578999999774222 22222221222 234889999975
No 391
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.88 E-value=0.0011 Score=66.87 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=65.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.+||.+ +|+.|.|||||++.|.. +...++ .+ .|.. .|.-+ -|+....++-... .++
T Consensus 46 ~FNIMV---VgqSglgkstlinTlf~-s~v~~~--s~----~~~~-~~p~p-kT~eik~~thvie------------E~g 101 (336)
T KOG1547|consen 46 DFNIMV---VGQSGLGKSTLINTLFK-SHVSDS--SS----SDNS-AEPIP-KTTEIKSITHVIE------------EKG 101 (336)
T ss_pred ceEEEE---EecCCCCchhhHHHHHH-HHHhhc--cC----CCcc-cCccc-ceEEEEeeeeeee------------ecc
Confidence 589999 99999999999999853 332222 01 1110 11111 1222222221111 122
Q ss_pred CceEEEEEcCCCccchHH-------------H-HHHhh----------h----ccCceEEEEeCC-CCcchhHHHHHHHH
Q 003804 88 NEYLINLIDSPGHVDFSS-------------E-VTAAL----------R----ITDGALVVVDCI-EGVCVQTETVLRQA 138 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~-------------e-~~~~l----------~----~~D~ailvvda~-~gv~~qt~~~~~~~ 138 (794)
-..++|+|||||+.|++. + -...| + .+++|+.-|.++ +...+-..+.++.+
T Consensus 102 VklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrL 181 (336)
T KOG1547|consen 102 VKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRL 181 (336)
T ss_pred eEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHH
Confidence 346799999999877432 1 11111 1 346788888776 33445555554433
Q ss_pred HhcCCccEEEEecCccc
Q 003804 139 LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 139 ~~~~~~~iv~iNKiD~~ 155 (794)
.+ =+-+|=||-|.|-.
T Consensus 182 t~-vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 182 TE-VVNVVPVIAKADTL 197 (336)
T ss_pred hh-hheeeeeEeecccc
Confidence 21 22445578899976
No 392
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0018 Score=72.68 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCccchHHHHH---Hhhh---ccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVT---AALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~---~~l~---~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~ 155 (794)
+++.+.+|||+|......+.. ..+. ..+-.+||+|++-+-..- ..+++... .++ -=++++|+|-.
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~-~~~~~~f~--~~~~~~~I~TKlDEt 339 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL-DEVISAYQ--GHGIHGCIITKVDEA 339 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH-HHHHHHhc--CCCCCEEEEEeeeCC
Confidence 466789999999754333222 2222 234578999998543211 12222211 233 23889999986
No 393
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0074 Score=63.46 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=51.6
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHH--HHHHHhcCCccEEEEecCccchhccCCCH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV--LRQALGERIRPVLTVNKMDRCFLELQVDG 163 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~--~~~~~~~~~~~iv~iNKiD~~~~~~~~~~ 163 (794)
+.-++.+.||.|-|--.- | ..-...+|..++|.=+.-|...|..+. ++. -=|+||||.|+. ++
T Consensus 140 dAaG~DvIIVETVGvGQs--e-v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi------aDi~vINKaD~~----~A-- 204 (323)
T COG1703 140 DAAGYDVIIVETVGVGQS--E-VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI------ADIIVINKADRK----GA-- 204 (323)
T ss_pred HhcCCCEEEEEecCCCcc--h-hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh------hheeeEeccChh----hH--
Confidence 445788999999986442 2 223457899999988888888887643 333 238999999987 44
Q ss_pred HHHHHHHHHHHHH
Q 003804 164 EEAYQTFQKVIEN 176 (794)
Q Consensus 164 ~~~~~~~~~~~~~ 176 (794)
+..+..++..+..
T Consensus 205 ~~a~r~l~~al~~ 217 (323)
T COG1703 205 EKAARELRSALDL 217 (323)
T ss_pred HHHHHHHHHHHHh
Confidence 3445555555443
No 394
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.83 E-value=0.0013 Score=66.18 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
..+.+ +|.+|+|||||+++|+...
T Consensus 128 ~~~~~---~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYV---VGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEE---EcCCCCCHHHHHHHHHHhc
Confidence 46777 9999999999999997654
No 395
>PRK12288 GTPase RsgA; Reviewed
Probab=96.82 E-value=0.00082 Score=73.96 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.2
Q ss_pred EEEcccccCCCCChhHHHHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
+++ +|++|+|||||+|+|+..
T Consensus 208 ~~~---vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 208 SIF---VGQSGVGKSSLINALLPE 228 (347)
T ss_pred EEE---ECCCCCCHHHHHHHhccc
Confidence 456 899999999999999754
No 396
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.81 E-value=0.0045 Score=61.19 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=33.9
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccC-ceEEEEeCCCCcchhHHHHHHHHHhcCCc-----cEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITD-GALVVVDCIEGVCVQTETVLRQALGERIR-----PVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D-~ailvvda~~gv~~qt~~~~~~~~~~~~~-----~iv~iNKiD~~ 155 (794)
..+.||-+-| ++. ...+....| .-|+|+|..+|...--+ +-| =+++|||.|+.
T Consensus 97 ~Dll~iEs~G--NL~--~~~sp~L~d~~~v~VidvteGe~~P~K---------~gP~i~~aDllVInK~DLa 155 (202)
T COG0378 97 LDLLFIESVG--NLV--CPFSPDLGDHLRVVVIDVTEGEDIPRK---------GGPGIFKADLLVINKTDLA 155 (202)
T ss_pred CCEEEEecCc--cee--cccCcchhhceEEEEEECCCCCCCccc---------CCCceeEeeEEEEehHHhH
Confidence 5788899999 221 112333456 78999999998532211 112 26899999985
No 397
>PHA02518 ParA-like protein; Provisional
Probab=96.79 E-value=0.0037 Score=63.62 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=43.1
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHH---HHHHHh--cCCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV---LRQALG--ERIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~---~~~~~~--~~~~~i-v~iNKiD~ 154 (794)
+.+.+.||||||..+ ..+..++..+|.+|+++.+..--...+..+ ++.... .+.+.+ ++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 468899999999754 557789999999999999875433333333 333221 245554 66777654
No 398
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.76 E-value=0.0058 Score=64.75 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCccch----HHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcC-Cc-cEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df----~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~-~~-~iv~iNKiD~~ 155 (794)
.++.+.||||||.... ..++...++ ..|-.+||+|++.+-. .+..++..++ ++ -=++++|+|-.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~----d~~~~~~~f~~~~~~~~I~TKlDet 224 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK----DMIEIITNFKDIHIDGIVFTKFDET 224 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH----HHHHHHHHhCCCCCCEEEEEeecCC
Confidence 3578999999998643 333333333 3456899999874321 1222333322 22 33889999986
No 399
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0033 Score=69.24 Aligned_cols=139 Identities=16% Similarity=0.149 Sum_probs=74.0
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecC---ChhhHhhhCcccccceEEEEeecchhhh----hc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTD---TRQDEAERGITIKSTGISLYYEMTDAAL----KS 80 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D---~~~~E~~rgiTi~~~~~~~~~~~~~~~~----~~ 80 (794)
+..|-+ +|-.||||||.+..|..+-.. .....+ .-..| ....||-+...-....-.|.- ..++.+ ++
T Consensus 100 P~vImm---vGLQGsGKTTt~~KLA~~lkk-~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v~~f~~-~~~~~Pv~Iak~ 173 (451)
T COG0541 100 PTVILM---VGLQGSGKTTTAGKLAKYLKK-KGKKVL-LVAADTYRPAAIEQLKQLAEQVGVPFFGS-GTEKDPVEIAKA 173 (451)
T ss_pred CeEEEE---EeccCCChHhHHHHHHHHHHH-cCCceE-EEecccCChHHHHHHHHHHHHcCCceecC-CCCCCHHHHHHH
Confidence 445666 899999999999998543322 110011 11122 112333333322222221211 111111 11
Q ss_pred cccccCCCceEEEEEcCCCccc----hHHHHH--HhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCc
Q 003804 81 YRGERQGNEYLINLIDSPGHVD----FSSEVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 153 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~d----f~~e~~--~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD 153 (794)
-....+...+.+.||||+|... +..|+. ...-..|=+++|+||.-|- .......+....+++- ++++|+|
T Consensus 174 al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---dA~~~A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 174 ALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---DAVNTAKAFNEALGITGVILTKLD 250 (451)
T ss_pred HHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---HHHHHHHHHhhhcCCceEEEEccc
Confidence 1223444567899999999532 444433 3344568899999999763 2222233344556655 8999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
-.
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 74
No 400
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.73 E-value=0.0031 Score=61.25 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=39.6
Q ss_pred HHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh--cCCccEEEEecCccc
Q 003804 107 VTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 107 ~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~--~~~~~iv~iNKiD~~ 155 (794)
+..++..+|.+++|+|+......+...+.+.+.. .++|+++++||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 5678999999999999998766666666666554 348999999999986
No 401
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.71 E-value=0.0019 Score=69.53 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHH
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
+.+++++ +|.+|+|||||+++|..
T Consensus 120 ~~~~~~~---~G~pnvGKSsliN~l~~ 143 (287)
T PRK09563 120 RAIRAMI---IGIPNVGKSTLINRLAG 143 (287)
T ss_pred CceEEEE---ECCCCCCHHHHHHHHhc
Confidence 4578888 99999999999999964
No 402
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.71 E-value=0.0043 Score=66.00 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
..-|.| +|.+|+|||||+++|+..
T Consensus 104 ~~~v~l---~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 104 QLVLNL---VSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHH
Confidence 455666 999999999999999865
No 403
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=96.70 E-value=0.0091 Score=51.40 Aligned_cols=63 Identities=27% Similarity=0.432 Sum_probs=46.3
Q ss_pred EEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 371 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 371 ~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
.|..++..+..|. +..+||.+|++++|+.+.+++.+ . ..+|.+|.. ...++++|.|||-+++.
T Consensus 4 ~i~~~~~~~~~g~-vv~G~v~sG~i~~g~~v~~~p~~----~-----~~~V~sI~~----~~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 4 PIDRVFTVKGQGT-VVTGTVLSGSVKVGDKVEILPLG----E-----ETRVRSIQV----HGKDVEEAKAGDRVALN 66 (83)
T ss_pred EEEEEEEcCCcEE-EEEEEEeecEEeCCCEEEECCCC----c-----eEEEEEEEE----CCcCcCEEcCCCEEEEE
Confidence 3444443345565 88999999999999999986532 1 257888764 35778999999999884
No 404
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.70 E-value=0.0012 Score=65.69 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCccchHHH-----HHHhhhccCceEEEEeCCCCcch-hHHH-HHHHHHhcCCccEEEEecCccchhccCC
Q 003804 89 EYLINLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIEGVCV-QTET-VLRQALGERIRPVLTVNKMDRCFLELQV 161 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e-----~~~~l~~~D~ailvvda~~gv~~-qt~~-~~~~~~~~~~~~iv~iNKiD~~~~~~~~ 161 (794)
.....||-|.|-.+...- .....-..+.+|.|||+..-... .... +..|+. .-=++++||+|+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~---~ADvIvlnK~D~~------ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA---FADVIVLNKIDLV------ 154 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC---T-SEEEEE-GGGH------
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch---hcCEEEEeccccC------
Confidence 456778999996653322 22223356899999999653211 2222 223332 3448999999998
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 003804 162 DGEEAYQTFQKVIENANV 179 (794)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~ 179 (794)
+.++..+++++.+.++|.
T Consensus 155 ~~~~~i~~~~~~ir~lnp 172 (178)
T PF02492_consen 155 SDEQKIERVREMIRELNP 172 (178)
T ss_dssp HHH--HHHHHHHHHHH-T
T ss_pred ChhhHHHHHHHHHHHHCC
Confidence 434344667777776654
No 405
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.68 E-value=0.003 Score=67.55 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHH
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
+.+++++ +|.+|+|||||+++|..
T Consensus 117 ~~~~~~~---vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 117 RPIRAMI---VGIPNVGKSTLINRLAG 140 (276)
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHhC
Confidence 4578888 99999999999999953
No 406
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.67 E-value=0.0018 Score=67.95 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.+++ +|++|+|||||+++|+..
T Consensus 122 ~~~~---~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVF---AGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEE---ECCCCCCHHHHHHHHhhh
Confidence 3456 899999999999999754
No 407
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.65 E-value=0.004 Score=67.98 Aligned_cols=68 Identities=13% Similarity=0.096 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-----------chhHHHHHHHHHh----cCCccEEEEecC
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKM 152 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-----------~~qt~~~~~~~~~----~~~~~iv~iNKi 152 (794)
++..+.++|++|+..+..-....+..++++++|||.++-- ...+...++.+.. .+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 4788999999999998988999999999999999998631 2233444554443 467999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 239 D~f 241 (317)
T cd00066 239 DLF 241 (317)
T ss_pred HHH
Confidence 986
No 408
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.61 E-value=0.012 Score=50.45 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=40.3
Q ss_pred eEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 385 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 385 l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
...+||.+|+++.||.|++++.+ . ..+|..|.. +..+++.|.|||.+++.
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~----~-----~~~V~si~~----~~~~~~~a~aGd~v~l~ 66 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG----K-----TSRVKSIET----FDGELDEAGAGESVTLT 66 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC----C-----eEEEEEEEE----CCcEeCEEcCCCEEEEE
Confidence 68999999999999999987532 1 257888874 34679999999999883
No 409
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.60 E-value=0.011 Score=53.06 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=56.5
Q ss_pred CCCeEEEEEEeeecC--------CCCcceEEEEEEeeeecCCCEEEEcCCCC--CCCCcc-ccceeeeceEEEEecCcee
Q 003804 365 EGPLMLYVSKMIPAS--------DKGRFFAFGRVFSGKVATGLKVRIMGPNY--VPGEKK-DLYVKSVQRTVIWMGKKQE 433 (794)
Q Consensus 365 ~~plva~VfK~~~~~--------~~g~~l~~~RV~sG~L~~g~~l~v~~~n~--~~~~~~-~~~~~kv~~l~~~~g~~~~ 433 (794)
+.|+.++|...+..+ -+|. ++-++|.+|+|+.||+|-+..--. ..++.. .....+|..|+. ...
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~Gg-VigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~----~~~ 77 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGG-VAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKA----ENN 77 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceee-EEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEe----cCc
Confidence 456777777776644 3344 899999999999999997642100 000100 112345666654 446
Q ss_pred eeCcccCCCEEEE-eccccccccce
Q 003804 434 TVEDVPCGNTVAM-VGLDQYITKNA 457 (794)
Q Consensus 434 ~v~~a~AGdI~ai-~gl~~~~~~tg 457 (794)
.+++|.||+.++| ++|+..+++.+
T Consensus 78 ~l~~a~pGgliGvgT~Ldpsltk~D 102 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLDPTLTKAD 102 (113)
T ss_pred cccEEeCCCeEEEccccCccccccc
Confidence 7999999999988 56776655543
No 410
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.59 E-value=0.0072 Score=64.25 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=42.8
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH----hcCCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~----~~~~~~i-v~iNKiD~ 154 (794)
+.|.+.||||||.... ..+..++..||.+|+++.+..---..+..+++.+. ..+++.. +++|++|.
T Consensus 114 ~~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 114 EEYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred ccCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 3688999999987532 12445689999999999886433233333333322 2355544 78999874
No 411
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=96.56 E-value=0.0048 Score=63.87 Aligned_cols=90 Identities=21% Similarity=0.193 Sum_probs=50.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+-.-|+| +|..++|||||+|+|+....... .| +.. .-.-+||-+... .+ .
T Consensus 5 ~~v~vvsv---~G~~~sGKS~llN~l~~~~~~f~---~~-----~~~-~~~T~gi~~~~~----~~-------------~ 55 (224)
T cd01851 5 FPVAVVSV---FGPQSSGKSFLLNHLFGTLSGFD---VM-----DTS-QQTTKGIWMWSV----PF-------------K 55 (224)
T ss_pred CCEEEEEE---ECCCCCCHHHHHHHHhCCCCCeE---ec-----CCC-CCCccceEEEec----cc-------------c
Confidence 34456777 99999999999999965421111 11 100 000122221111 11 0
Q ss_pred CCCceEEEEEcCCCccch------HHHHHHhhhc--cCceEEEEeCC
Q 003804 86 QGNEYLINLIDSPGHVDF------SSEVTAALRI--TDGALVVVDCI 124 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df------~~e~~~~l~~--~D~ailvvda~ 124 (794)
.+.+..+.++||||..+- ......++.. +|..|+.++..
T Consensus 56 ~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 56 LGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred CCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 123578999999997542 2234455555 88888777765
No 412
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.55 E-value=0.0024 Score=67.76 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.7
Q ss_pred ccCCCCChhHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~ 33 (794)
+|++|+|||||+|+|+-
T Consensus 170 ~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 170 LGQSGVGKSTLINALLP 186 (301)
T ss_pred ECCCCCcHHHHHHhhCc
Confidence 79999999999999964
No 413
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.52 E-value=0.0068 Score=66.79 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-----------cchhHHHHHHHHHh----cCCccEEEEecC
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----------VCVQTETVLRQALG----ERIRPVLTVNKM 152 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-----------v~~qt~~~~~~~~~----~~~~~iv~iNKi 152 (794)
++..+.++|..|+..+..-....+..++++|+|||.++- ....+..+|+.+.. .+.|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 378899999999999999999999999999999999863 22344455655543 457999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|..
T Consensus 262 D~~ 264 (342)
T smart00275 262 DLF 264 (342)
T ss_pred HhH
Confidence 986
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.51 E-value=0.0057 Score=69.75 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCccchHHHHHHhhh-ccC-----ceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALR-ITD-----GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~-~~D-----~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.++.+.+|||+|.......+...+. ..+ -.+||+|+..+-.. ...+++.....+ .--+++||+|-.
T Consensus 333 ~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 333 RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCC-CCEEEEeCCCCc
Confidence 3557889999994432222222221 112 26899999865411 112222222222 234788999975
No 415
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.51 E-value=0.01 Score=53.21 Aligned_cols=45 Identities=24% Similarity=0.163 Sum_probs=32.8
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR 136 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~ 136 (794)
+.+.+||||+..+ .....++..+|.+++++++...-...+..+++
T Consensus 40 ~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 5688999999765 34558889999999999987544444444443
No 416
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.49 E-value=0.0032 Score=62.16 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
+++++ +|..++|||||+++|+.
T Consensus 116 ~~~~~---~G~~~vGKstlin~l~~ 137 (171)
T cd01856 116 IRAMV---VGIPNVGKSTLINRLRG 137 (171)
T ss_pred eEEEE---ECCCCCCHHHHHHHHhC
Confidence 57888 99999999999999964
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.45 E-value=0.0094 Score=67.53 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCccchH----HHHHHhhh---ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFS----SEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~----~e~~~~l~---~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.+.||||||+..+. .++...+. .-+-+.+|++++.+. .....+++.....++ --++++|+|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 5789999999986543 23333333 223568899987543 222334444333332 24889999985
No 418
>PRK12289 GTPase RsgA; Reviewed
Probab=96.44 E-value=0.0023 Score=70.53 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.7
Q ss_pred EEEcccccCCCCChhHHHHHHHHHc
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
+++ +|++|+|||||+|+|+...
T Consensus 175 ~v~---iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVV---AGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEE---EeCCCCCHHHHHHHHcCcc
Confidence 566 8999999999999997443
No 419
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.41 E-value=0.0045 Score=59.97 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=41.2
Q ss_pred HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 105 SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 105 ~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
....+.++.+|.+|+|+|+.++...+...+.+.+...+.|+++++||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 345566777999999999998877776666666666788999999999985
No 420
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.37 E-value=0.0036 Score=68.32 Aligned_cols=58 Identities=29% Similarity=0.321 Sum_probs=39.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
++++|.+ +|-+++|||||+|+|+....+...... |.|-....+.+
T Consensus 131 ~~~~v~v---vG~PNVGKSslIN~L~~k~~~~~s~~P---------------G~Tk~~q~i~~----------------- 175 (322)
T COG1161 131 RKIRVGV---VGYPNVGKSTLINRLLGKKVAKTSNRP---------------GTTKGIQWIKL----------------- 175 (322)
T ss_pred cceEEEE---EcCCCCcHHHHHHHHhcccceeeCCCC---------------ceecceEEEEc-----------------
Confidence 3577888 999999999999999765553332222 45554443332
Q ss_pred CCceEEEEEcCCCcc
Q 003804 87 GNEYLINLIDSPGHV 101 (794)
Q Consensus 87 ~~~~~inlIDTPGh~ 101 (794)
+..+.|+||||..
T Consensus 176 --~~~i~LlDtPGii 188 (322)
T COG1161 176 --DDGIYLLDTPGII 188 (322)
T ss_pred --CCCeEEecCCCcC
Confidence 3458999999964
No 421
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.37 E-value=0.0074 Score=66.38 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=68.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCccc-ccCCceeecCCh---hhHhhh------CcccccceEEEEeecchhh
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTR---QDEAER------GITIKSTGISLYYEMTDAA 77 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~-~~~G~~~~~D~~---~~E~~r------giTi~~~~~~~~~~~~~~~ 77 (794)
.-.|++ +|+.|+||||.+-.|......... ...| -..+|+. ..||-+ |+++......-++..
T Consensus 203 ~~vi~L---VGPTGVGKTTTlAKLAar~~~~~~~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~---- 274 (407)
T COG1419 203 KRVIAL---VGPTGVGKTTTLAKLAARYVMLKKKKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAE---- 274 (407)
T ss_pred CcEEEE---ECCCCCcHHHHHHHHHHHHHhhccCcceE-EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHH----
Confidence 446777 999999999999999655442221 1112 1244433 234322 232222111000100
Q ss_pred hhccccccCCCceEEEEEcCCCccchH----HHHHHhhhcc--CceEEEEeCCCCcchhHHHHHHHHHhcCCccE--EEE
Q 003804 78 LKSYRGERQGNEYLINLIDSPGHVDFS----SEVTAALRIT--DGALVVVDCIEGVCVQTETVLRQALGERIRPV--LTV 149 (794)
Q Consensus 78 ~~~~~~~~~~~~~~inlIDTPGh~df~----~e~~~~l~~~--D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i--v~i 149 (794)
.. ..-+++.+.||||.|+.-.. .++...+..+ .-.-||++++. +.+.+-+....++.-.+ +.+
T Consensus 275 ---ai--~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~----K~~dlkei~~~f~~~~i~~~I~ 345 (407)
T COG1419 275 ---AI--EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT----KYEDLKEIIKQFSLFPIDGLIF 345 (407)
T ss_pred ---HH--HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc----chHHHHHHHHHhccCCcceeEE
Confidence 00 01135689999999976433 3444444433 34567788763 33333344444444323 789
Q ss_pred ecCccc
Q 003804 150 NKMDRC 155 (794)
Q Consensus 150 NKiD~~ 155 (794)
+|+|-.
T Consensus 346 TKlDET 351 (407)
T COG1419 346 TKLDET 351 (407)
T ss_pred Eccccc
Confidence 999986
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.019 Score=63.99 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCccch----HHHHHHhhhcc--C-ceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDF----SSEVTAALRIT--D-GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df----~~e~~~~l~~~--D-~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+++.+.||||||..-. ..++..-+..+ + -.+||+||+.|-... ..+++.....+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCC
Confidence 4678999999997532 23444444433 3 588999999873322 23443332222 334889999975
No 423
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.34 E-value=0.03 Score=56.55 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=95.0
Q ss_pred CCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeee
Q 003804 630 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 709 (794)
Q Consensus 630 g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 709 (794)
+..+.||.+.|+..- .-...+.+-++.|=..|..+|+..|+..-..|...++|.+|-+.+|.+...|.+..+.|.+.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T TIGR00257 89 GSDLGDIGAVVVRYF---GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKS 165 (204)
T ss_pred HCCCCcEEEEEEEec---CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEee
Confidence 567888888877432 12345566677888899999999999999999999999999999999999999999999888
Q ss_pred eccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEee
Q 003804 710 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 747 (794)
Q Consensus 710 ~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~ 747 (794)
+..+ .++++..+|..+.-.+...|..+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 166 NFSN---NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7743 5899999999999999999999999987653
No 424
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.32 E-value=0.01 Score=62.61 Aligned_cols=111 Identities=27% Similarity=0.234 Sum_probs=68.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
-|++ +|-.|+|||||+++|- .+....+. + + =-|.+.+.-+...+ ++
T Consensus 180 viav---VGYTNaGKsTLikaLT-~Aal~p~d-----r-L---------FATLDpT~h~a~Lp---------------sg 225 (410)
T KOG0410|consen 180 VIAV---VGYTNAGKSTLIKALT-KAALYPND-----R-L---------FATLDPTLHSAHLP---------------SG 225 (410)
T ss_pred eEEE---EeecCccHHHHHHHHH-hhhcCccc-----h-h---------heeccchhhhccCC---------------CC
Confidence 4566 9999999999999994 22221110 0 0 01222222222232 46
Q ss_pred eEEEEEcCCCccc---------hHHHHHHhhhccCceEEEEeCCCC-cchhHHHHHHHHHhcCCcc-------EEEEecC
Q 003804 90 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIRP-------VLTVNKM 152 (794)
Q Consensus 90 ~~inlIDTPGh~d---------f~~e~~~~l~~~D~ailvvda~~g-v~~qt~~~~~~~~~~~~~~-------iv~iNKi 152 (794)
..+.+.||-|+.. |. .+..-..-+|..+-|+|.++. ...|-..++.-+...++|. |=|=||+
T Consensus 226 ~~vlltDTvGFisdLP~~LvaAF~-ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnki 304 (410)
T KOG0410|consen 226 NFVLLTDTVGFISDLPIQLVAAFQ-ATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKI 304 (410)
T ss_pred cEEEEeechhhhhhCcHHHHHHHH-HHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccc
Confidence 7888999999642 22 223334568999999999875 4567777888887888752 2355666
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|..
T Consensus 305 D~e 307 (410)
T KOG0410|consen 305 DYE 307 (410)
T ss_pred ccc
Confidence 653
No 425
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.26 E-value=0.026 Score=62.15 Aligned_cols=63 Identities=22% Similarity=0.117 Sum_probs=39.8
Q ss_pred ceEEEEEcCCCccchHHHHHHhh--------hccCceEEEEeCCCCcchh------------------------HHHHHH
Q 003804 89 EYLINLIDSPGHVDFSSEVTAAL--------RITDGALVVVDCIEGVCVQ------------------------TETVLR 136 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l--------~~~D~ailvvda~~gv~~q------------------------t~~~~~ 136 (794)
.....+|.|.|-.+-..- ...+ -..|++|-|||+....... .....+
T Consensus 92 ~~d~IvIEtsG~a~P~~i-~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (341)
T TIGR02475 92 RPDHILIETSGLALPKPL-VQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFED 170 (341)
T ss_pred CCCEEEEeCCCCCCHHHH-HHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHH
Confidence 356678999998875432 2222 2568999999998543210 011234
Q ss_pred HHHhcCCccEEEEecCccc
Q 003804 137 QALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 137 ~~~~~~~~~iv~iNKiD~~ 155 (794)
|+... =+|++||+|+.
T Consensus 171 Qi~~A---D~IvlnK~Dl~ 186 (341)
T TIGR02475 171 QLACA---DLVILNKADLL 186 (341)
T ss_pred HHHhC---CEEEEeccccC
Confidence 44333 48999999987
No 426
>PRK11568 hypothetical protein; Provisional
Probab=96.18 E-value=0.042 Score=55.59 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=94.9
Q ss_pred CCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeee
Q 003804 630 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 709 (794)
Q Consensus 630 g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 709 (794)
+..+.|+.+.++-.- .-...+.+-++.|=..|.++|+.+|+.+-..|...+.|.++-+.+|.+...|.+..+.|.+.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T PRK11568 89 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVNS 165 (204)
T ss_pred HCCCccEEEEEEEEc---CCcccccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEcc
Confidence 667888888887431 12345566677888899999999999999999999999999999999999999999999888
Q ss_pred eccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEee
Q 003804 710 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 747 (794)
Q Consensus 710 ~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~ 747 (794)
+..+ .+++...+|..+.-.|...|..+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 166 EYQA---FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred eecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7743 5889999999999999999999999987654
No 427
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.18 E-value=0.0052 Score=66.09 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.+++ +|+.|+|||||++.|+..
T Consensus 163 ~~~~---~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 163 TSVL---VGQSGVGKSTLINALLPD 184 (287)
T ss_pred eEEE---ECCCCCCHHHHHHHHhch
Confidence 4666 999999999999999643
No 428
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.15 E-value=0.0062 Score=59.02 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
..++++ +|..++|||||+++|+
T Consensus 101 ~~~~~~---ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 101 EGKVGV---VGYPNVGKSSIINALK 122 (156)
T ss_pred CcEEEE---ECCCCCCHHHHHHHHh
Confidence 356777 9999999999999996
No 429
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.07 E-value=0.03 Score=61.02 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=66.6
Q ss_pred ccCCCCChhHHHHHHHHHcC-----CcccccCCceeecCChhhHhh--hCcccccceEEEEeecch-hhhhccccccC--
Q 003804 17 ANSTFAGKSTLTDSLVAAAG-----IIAQEVAGDVRMTDTRQDEAE--RGITIKSTGISLYYEMTD-AALKSYRGERQ-- 86 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g-----~i~~~~~G~~~~~D~~~~E~~--rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~-- 86 (794)
.|-.|||||||+++|+.... .+.+ +.|+. -.|..-.+.. .-.++...++.+...... ..+..+.....
T Consensus 10 tGFLGaGKTTll~~ll~~~~~~riaVi~N-EfG~v-~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~~~~~ 87 (318)
T PRK11537 10 TGFLGAGKTTLLRHILNEQHGYKIAVIEN-EFGEV-SVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKG 87 (318)
T ss_pred EECCCCCHHHHHHHHHhcccCCccccccc-CcCCc-cccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHHHhcc
Confidence 58899999999999996532 1212 24431 2222111110 112233333333221100 11111111111
Q ss_pred CCceEEEEEcCCCccchHHHHHHhh---------hccCceEEEEeCCCCcchhH--HHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAAL---------RITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l---------~~~D~ailvvda~~gv~~qt--~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.......+|-|-|-.+-. .+...+ -..|++|.|||+..+..... .....|+... =+|++||+|+.
T Consensus 88 ~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D~IvlnK~Dl~ 163 (318)
T PRK11537 88 NIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---DRILLTKTDVA 163 (318)
T ss_pred CCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---CEEEEeccccC
Confidence 113456789999988733 222222 23589999999986532211 1122444433 38999999987
No 430
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.04 E-value=0.022 Score=62.76 Aligned_cols=96 Identities=23% Similarity=0.184 Sum_probs=56.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC-CcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc---cccc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS---YRGE 84 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g-~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~---~~~~ 84 (794)
.+++| +|-+++|||||.++|-.... .+.. + . -.|+......+.+.. .+.+. +.+.
T Consensus 3 lk~Gi---vGlPn~GKSTlfnaLT~~~~~~~a~-------y-p--------ftTi~p~~g~v~v~d--~r~d~L~~~~~~ 61 (368)
T TIGR00092 3 LSGGI---VGLPNVGKSTLFAATTNLLGNEAAN-------P-P--------FTTIEPNAGVVNPSD--PRLDLLAIYIKP 61 (368)
T ss_pred ceEEE---ECCCCCChHHHHHHHhCCCccccCC-------C-C--------CCCCCCceeEEEech--hHHHHHHHHhCC
Confidence 56777 99999999999999932222 1111 0 0 012333332222221 11111 1112
Q ss_pred cCCCceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCC
Q 003804 85 RQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (794)
.......+.++|.||-.. +......-+|.+|+.+.|||+-+
T Consensus 62 ~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 62 EKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 222455789999999654 44467788999999999999953
No 431
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.03 E-value=0.012 Score=62.83 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=44.6
Q ss_pred CCccc-hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 98 PGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 98 PGh~d-f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
|||.. ...++...+..+|.+++|+|+..........+.+.+ .+.|.|+|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 88864 567889999999999999999877665555554443 367999999999985
No 432
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.97 E-value=0.0096 Score=59.79 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=42.0
Q ss_pred CCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 98 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 98 PGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
|.+..|...+...++.+|++++|+|+.+........++. ...+.|+++++||+|+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLL 74 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcC
Confidence 444457888889999999999999998755433343422 23567999999999986
No 433
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.94 E-value=0.02 Score=68.58 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=35.5
Q ss_pred CceEEEEEcCCCccchHHHHHHhh------hccCceEEEEeCCCCcchhHHHHHHHHHhc-CCc-cEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGE-RIR-PVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l------~~~D~ailvvda~~gv~~qt~~~~~~~~~~-~~~-~iv~iNKiD~~ 155 (794)
+++.+.||||||......++..-+ ...+-.+||+|++.+-.. -..+++..... +.+ -=++++|+|-.
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~-l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT-LNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH-HHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 356799999999432222222222 234568999999853211 11122221111 112 23889999976
No 434
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.92 E-value=0.022 Score=60.57 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=40.6
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH----hcCCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~----~~~~~~i-v~iNKiD~ 154 (794)
+.|.+.||||||...-. .+..++..+|.+|+++.+.---...+..+++.+. ..+++.. +++|+.|.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 46899999999864311 1234688999999998764322223333333322 2345543 78999875
No 435
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.021 Score=62.10 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=56.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc----cccc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS----YRGE 84 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~----~~~~ 84 (794)
++++| +|-+++|||||.++|-.....+.+ | .+ .||+.......... .+... ..|.
T Consensus 3 l~~GI---VGlPNVGKSTlFnAlT~~~a~~aN-------Y-PF--------~TIePN~Giv~v~d--~rl~~L~~~~~c~ 61 (372)
T COG0012 3 LKIGI---VGLPNVGKSTLFNALTKAGAEIAN-------Y-PF--------CTIEPNVGVVYVPD--CRLDELAEIVKCP 61 (372)
T ss_pred ceeEE---ecCCCCcHHHHHHHHHcCCccccC-------C-Cc--------ccccCCeeEEecCc--hHHHHHHHhcCCC
Confidence 56777 999999999999999433321111 0 00 23333333332221 11111 1112
Q ss_pred cCCCceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCC
Q 003804 85 RQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (794)
..-....+.|+|.+|-+. +-.....-+|.+|+.+.||||.+
T Consensus 62 ~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 62 PKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 222355789999999654 33345677899999999999983
No 436
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.90 E-value=0.018 Score=61.66 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=69.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHH---cCCcccccCCceeecCChhhHh--hhCcccccceEEEEeecchhh--hh
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAA---AGIIAQEVAGDVRMTDTRQDEA--ERGITIKSTGISLYYEMTDAA--LK 79 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~---~g~i~~~~~G~~~~~D~~~~E~--~rgiTi~~~~~~~~~~~~~~~--~~ 79 (794)
+++-+.+ +|-.|+||||.+..|.+. .|.-.--.+|.+. -...-|| ..|-..+...++-....+... .+
T Consensus 138 ~p~Vil~---vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTF--RAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafD 212 (340)
T COG0552 138 KPFVILF---VGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF--RAAAIEQLEVWGERLGVPVISGKEGADPAAVAFD 212 (340)
T ss_pred CcEEEEE---EecCCCchHhHHHHHHHHHHHCCCeEEEEecchH--HHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHH
Confidence 3566677 999999999999998543 2211000122110 0001111 111111222222111111100 01
Q ss_pred ccccccCCCceEEEEEcCCCc----cchHHHHHHhhhc---cCc-----eEEEEeCCCCcchhH-HHHHHHHHhcCCcc-
Q 003804 80 SYRGERQGNEYLINLIDSPGH----VDFSSEVTAALRI---TDG-----ALVVVDCIEGVCVQT-ETVLRQALGERIRP- 145 (794)
Q Consensus 80 ~~~~~~~~~~~~inlIDTPGh----~df~~e~~~~l~~---~D~-----ailvvda~~gv~~qt-~~~~~~~~~~~~~~- 145 (794)
. ..+...+++.+.||||+|. .+++.|...-.|+ .+. .++|+||+-|-..-. .+++..+ ++.
T Consensus 213 A-i~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ea----v~l~ 287 (340)
T COG0552 213 A-IQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEA----VGLD 287 (340)
T ss_pred H-HHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHh----cCCc
Confidence 1 1233446889999999993 4577775555443 344 778889998743211 1122222 232
Q ss_pred EEEEecCcc
Q 003804 146 VLTVNKMDR 154 (794)
Q Consensus 146 iv~iNKiD~ 154 (794)
=++++|+|-
T Consensus 288 GiIlTKlDg 296 (340)
T COG0552 288 GIILTKLDG 296 (340)
T ss_pred eEEEEeccc
Confidence 388999995
No 437
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.88 E-value=0.068 Score=55.80 Aligned_cols=64 Identities=30% Similarity=0.293 Sum_probs=41.3
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh--cCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~--~~~~~iv~iNKiD~~ 155 (794)
+.+.+||||+.. ...+..++..+|.+|+++.+..--...+. .+.+.... ...+.-+++|+.|..
T Consensus 115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 479999999954 35677889999999999988532112222 12222221 223455899999864
No 438
>PRK13796 GTPase YqeH; Provisional
Probab=95.87 E-value=0.0087 Score=66.60 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
.++.+ +|.+|+|||||+|+|+...
T Consensus 161 ~~v~v---vG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYV---VGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEE---EcCCCCcHHHHHHHHHhhc
Confidence 36777 9999999999999998643
No 439
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.87 E-value=0.011 Score=60.07 Aligned_cols=83 Identities=29% Similarity=0.318 Sum_probs=54.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
-+|++ +|-+.+|||||+..+-...... ++ .|. .|...-.-.+.| +
T Consensus 63 aRVal---IGfPSVGKStlLs~iT~T~Sea----A~---------yeF---TTLtcIpGvi~y----------------~ 107 (364)
T KOG1486|consen 63 ARVAL---IGFPSVGKSTLLSKITSTHSEA----AS---------YEF---TTLTCIPGVIHY----------------N 107 (364)
T ss_pred eEEEE---ecCCCccHHHHHHHhhcchhhh----hc---------eee---eEEEeecceEEe----------------c
Confidence 37888 9999999999999883221111 00 000 112222222333 4
Q ss_pred ceEEEEEcCCCccchH-------HHHHHhhhccCceEEEEeCCCC
Q 003804 89 EYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEG 126 (794)
Q Consensus 89 ~~~inlIDTPGh~df~-------~e~~~~l~~~D~ailvvda~~g 126 (794)
+-.|.++|.||...=. .+++...|.||.++.|.||..+
T Consensus 108 ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 108 GANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred CceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 8899999999975422 2477888999999999999865
No 440
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.81 E-value=0.06 Score=46.47 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=46.8
Q ss_pred EEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 370 LYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 370 a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
..+|+. +..|. ++.+||-+|++++|+.+.+++.+ +.++.-+|..|... ..++++|.+|+-|.|.
T Consensus 6 ~~vf~~---~~~g~-vag~kV~~G~l~~g~~v~vlr~~------~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 6 RAVFKI---SKVGN-IAGCYVTDGKIKRNAKVRVLRNG------EVIYEGKISSLKRF----KDDVKEVKKGYECGIT 69 (84)
T ss_pred EEEEEC---CCCcE-EEEEEEEECEEeCCCEEEEEcCC------CEEEEEEEEEEEEc----CcccCEECCCCEEEEE
Confidence 345543 34455 99999999999999999998632 11233577777753 6789999999999884
No 441
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.78 E-value=0.066 Score=60.20 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.5
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGII 38 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i 38 (794)
+.+|+| +|+.++|||||+++|....|..
T Consensus 219 ~~~IvI---~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 219 VRTVAI---LGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CcEEEE---EcCCCCCHHHHHHHHHHHhCCC
Confidence 468999 9999999999999998876654
No 442
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.73 E-value=0.038 Score=58.81 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH----hcCCccE-EEEecCc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMD 153 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~----~~~~~~i-v~iNKiD 153 (794)
..|.+.||||||...-. .+..++..||.+|+++.+..--...+..+++.+. ..+++.. +++|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 46899999999874321 2445688999999999875432223333333322 3455554 7899965
No 443
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.68 E-value=0.029 Score=60.46 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh----cCCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~----~~~~~i-v~iNKiD~ 154 (794)
+.|.+.||||||.... .....++..||.+|+++++..--...+..+++.+.. .+++.. +++|+.|.
T Consensus 114 ~~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 114 YEYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred ccCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 3588999999987421 223456788999999998864322333334333322 234444 88998873
No 444
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.68 E-value=0.013 Score=65.19 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.+|.+ +|.+|+|||||+++|+...+
T Consensus 155 ~~v~~---vG~~nvGKStliN~l~~~~~ 179 (360)
T TIGR03597 155 KDVYV---VGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHhhcc
Confidence 36788 99999999999999987543
No 445
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=95.61 E-value=0.012 Score=58.05 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=43.8
Q ss_pred CCCcc-chHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 97 SPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 97 TPGh~-df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
-|||. .-..++..++..+|.+++|+|+.++.......+.... .+.|.++++||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 37774 3566788999999999999999987665555444432 357899999999986
No 446
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.57 E-value=0.044 Score=56.16 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=44.6
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchh---HHHHHHHH---HhcCCccEEEEecCcc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ---TETVLRQA---LGERIRPVLTVNKMDR 154 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~q---t~~~~~~~---~~~~~~~iv~iNKiD~ 154 (794)
..++.+.||||+|-.. ..+..++..+|.+|+..-.+.-.-.+ |...++.. ....+|.-|+.|++.-
T Consensus 81 ~~~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 81 ASGFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred hcCCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 3467899999999654 23566777899999988776543333 33333322 2456788899999863
No 447
>PRK10818 cell division inhibitor MinD; Provisional
Probab=95.54 E-value=0.038 Score=58.76 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc---------CCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---------RIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~---------~~~~iv~iNKiD~~ 155 (794)
..+.+.|||||+... .....++..+|.+|+|+++...-...+..+++.+... ..+..+++|++|..
T Consensus 112 ~~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 112 MDFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred cCCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 468999999998875 4566778999999999998855445555566654321 12346889999864
No 448
>PRK00098 GTPase RsgA; Reviewed
Probab=95.53 E-value=0.013 Score=63.28 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.+++ +|++|+|||||+++|+.
T Consensus 166 ~~~~---~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 166 VTVL---AGQSGVGKSTLLNALAP 186 (298)
T ss_pred eEEE---ECCCCCCHHHHHHHHhC
Confidence 3556 89999999999999964
No 449
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.35 E-value=0.031 Score=55.31 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=33.2
Q ss_pred CceEEEEeCCCCcchhHHHHHHH--HHhcCCccEEEEecCccc
Q 003804 115 DGALVVVDCIEGVCVQTETVLRQ--ALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 115 D~ailvvda~~gv~~qt~~~~~~--~~~~~~~~iv~iNKiD~~ 155 (794)
|.+++|+|+..........+.+. +...+.|.|+++||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999998877766666666 334568999999999997
No 450
>PRK13695 putative NTPase; Provisional
Probab=95.26 E-value=0.06 Score=53.20 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=29.8
Q ss_pred CceEEEEe---CCCCcchhHHHHHHHHHhcCCccEEEEecC
Q 003804 115 DGALVVVD---CIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (794)
Q Consensus 115 D~ailvvd---a~~gv~~qt~~~~~~~~~~~~~~iv~iNKi 152 (794)
+.=++++| +.+....+....+..+.+.+.|+|+++||-
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 34447899 667777777788888888899999999984
No 451
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.15 E-value=0.031 Score=60.09 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=44.4
Q ss_pred CCCccc-hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 97 SPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 97 TPGh~d-f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
=|||.. -..++...+..+|.+|+|+|+..........+.... . +.|.++++||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-~-~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKII-G-NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-C-CCCEEEEEEchhcC
Confidence 389864 446788899999999999999887766655554433 2 78999999999985
No 452
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.15 E-value=0.041 Score=70.33 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=28.1
Q ss_pred hccCceEEEEeCCCCcch---hHHHH-------HH---HHHhcCCccEEEEecCccc
Q 003804 112 RITDGALVVVDCIEGVCV---QTETV-------LR---QALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 112 ~~~D~ailvvda~~gv~~---qt~~~-------~~---~~~~~~~~~iv~iNKiD~~ 155 (794)
+-.||+|++||+.+=... +-..+ +. .....++|+-|+++|+|+.
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 468999999999854321 11111 11 1223456888999999986
No 453
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=95.09 E-value=0.053 Score=55.08 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
+.+.+.|||||+... ..+....++.+|++|+|+++...-........+.+.+.+.+.+ +++||.|..
T Consensus 126 ~~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 468899999997322 2233445567999999999987777777888888888888866 899999875
No 454
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.09 E-value=0.12 Score=44.73 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=30.9
Q ss_pred EEEEEcCCCccchHHH-HHHhhhccCceEEEEeCCCCcchhHHHH
Q 003804 91 LINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETV 134 (794)
Q Consensus 91 ~inlIDTPGh~df~~e-~~~~l~~~D~ailvvda~~gv~~qt~~~ 134 (794)
.+.++|+||..+.... ....+..+|.+++++++...........
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 4678999997653321 2567788999999999886654444444
No 455
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.05 E-value=0.078 Score=54.24 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCccchHHHHHHh--hhccCceEEEEeCCCCcchhHHHHHHHHHhc----CCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGE----RIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~--l~~~D~ailvvda~~gv~~qt~~~~~~~~~~----~~~~i-v~iNKiD~ 154 (794)
..|.+.||||||......- ... ++.||.+++|+++..--......+++.+... +.+.. +++||.|.
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 4689999999987531111 112 3489999999987632222233344444332 44443 89999984
No 456
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.078 Score=57.51 Aligned_cols=69 Identities=16% Similarity=0.296 Sum_probs=41.6
Q ss_pred ccCCCceEEEEEcCCCccc----hHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccc
Q 003804 84 ERQGNEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh~d----f~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~ 155 (794)
..+..++.+.|+||.|... +..|+..... ..|-+|+|+||.-|-.... ...+.+..+-+ -++++|+|--
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~---Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA---QARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH---HHHHHHHhhccceEEEEecccC
Confidence 3455678999999999543 3334333332 3599999999997743221 11122222322 3789999963
No 457
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.00 E-value=0.053 Score=52.51 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=32.7
Q ss_pred CceEEEEeCCCCcchhHHHHH-HHHHhcCCccEEEEecCccc
Q 003804 115 DGALVVVDCIEGVCVQTETVL-RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 115 D~ailvvda~~gv~~qt~~~~-~~~~~~~~~~iv~iNKiD~~ 155 (794)
|.+++|+|+.++.......+. ..+...++|+|+++||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999887666655554 35566788999999999986
No 458
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=95.00 E-value=0.11 Score=45.97 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=49.4
Q ss_pred EEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccc
Q 003804 371 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 450 (794)
Q Consensus 371 ~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~ 450 (794)
+|.-...++..|. ++.+-|.+|+|+.||.+..-. . . -||..|+-..| .++++|.||+.+-|.|++
T Consensus 4 ~VlE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G~-~--~--------gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~ 68 (95)
T cd03702 4 VVIESKLDKGRGP-VATVLVQNGTLKVGDVLVAGT-T--Y--------GKVRAMFDENG---KRVKEAGPSTPVEILGLK 68 (95)
T ss_pred EEEEEEecCCCCc-cEEEEEEcCeEeCCCEEEEcc-c--c--------cEEEEEECCCC---CCCCEECCCCcEEEcCCC
Confidence 3444444566676 889999999999999997521 1 1 26666665544 679999999999999987
Q ss_pred cc
Q 003804 451 QY 452 (794)
Q Consensus 451 ~~ 452 (794)
+.
T Consensus 69 ~~ 70 (95)
T cd03702 69 GV 70 (95)
T ss_pred CC
Confidence 65
No 459
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.86 E-value=0.2 Score=49.42 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=77.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCC-cccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~-i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+.| +|.++|||||+++.|....+. ..- .. ..+...+|-+..|... ...+
T Consensus 3 ~ili---~G~~~sGKS~~a~~l~~~~~~~~~~--ia---t~~~~~~e~~~ri~~h---------------------~~~R 53 (170)
T PRK05800 3 LILV---TGGARSGKSRFAERLAAQSGLQVLY--IA---TAQPFDDEMAARIAHH---------------------RQRR 53 (170)
T ss_pred EEEE---ECCCCccHHHHHHHHHHHcCCCcEe--Cc---CCCCChHHHHHHHHHH---------------------HhcC
Confidence 3556 899999999999999876441 100 11 1112222322222111 1112
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcch-----h-----HH---HHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-----Q-----TE---TVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~-----q-----t~---~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..|..+.+|.+. .+..... ...+-+++||+..+... + .. .+.+.+.+.+...|++-|=...-
T Consensus 54 ~~~w~t~E~~~~l---~~~i~~~-~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~g 129 (170)
T PRK05800 54 PAHWQTVEEPLDL---AELLRAD-AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVGMG 129 (170)
T ss_pred CCCCeEecccccH---HHHHHhh-cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCccc
Confidence 4457778888652 2222221 12345788998755311 1 11 12233345566777777766554
Q ss_pred hhccCCCHHHHHHHHHHHHHHhhhhhhccc
Q 003804 156 FLELQVDGEEAYQTFQKVIENANVIMATYE 185 (794)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (794)
....+..-..+++.+..+|+.+....
T Consensus 130 ----~vp~~~~~r~~~d~lG~lnq~la~~a 155 (170)
T PRK05800 130 ----IVPEYRLGRHFRDIAGRLNQQLAAAA 155 (170)
T ss_pred ----ccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 34556677889999999999887543
No 460
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.85 E-value=0.037 Score=58.53 Aligned_cols=64 Identities=25% Similarity=0.273 Sum_probs=42.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc-cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~-~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...+|-+ +|-+|+|||||++++-.......+. ..| -+.|+|+..+.......
T Consensus 142 ~~~~vmV---vGvPNVGKSsLINa~r~~~Lrk~k~a~vG-----------~~pGVT~~V~~~iri~~------------- 194 (335)
T KOG2485|consen 142 SEYNVMV---VGVPNVGKSSLINALRNVHLRKKKAARVG-----------AEPGVTRRVSERIRISH------------- 194 (335)
T ss_pred CceeEEE---EcCCCCChHHHHHHHHHHHhhhccceecc-----------CCCCceeeehhheEecc-------------
Confidence 5678888 9999999999999984433222110 123 14578887765332222
Q ss_pred CCCceEEEEEcCCCc
Q 003804 86 QGNEYLINLIDSPGH 100 (794)
Q Consensus 86 ~~~~~~inlIDTPGh 100 (794)
.-.+.+|||||-
T Consensus 195 ---rp~vy~iDTPGi 206 (335)
T KOG2485|consen 195 ---RPPVYLIDTPGI 206 (335)
T ss_pred ---CCceEEecCCCc
Confidence 345899999994
No 461
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=94.79 E-value=0.32 Score=54.69 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=61.4
Q ss_pred hCcccccceEEEEeecchhhhhccccccCCCceEEEEEcCCCccc-------------hHHHHHHhhhccCceEEEEeCC
Q 003804 58 RGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCI 124 (794)
Q Consensus 58 rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~d-------------f~~e~~~~l~~~D~ailvvda~ 124 (794)
-|.|+....+++..+. ..-.+..++|.||-.. ........+....++||+|.-.
T Consensus 393 ~GkTVSnEvIsltVKG-------------PgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG 459 (980)
T KOG0447|consen 393 EGCTVSPETISLNVKG-------------PGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG 459 (980)
T ss_pred CCcccccceEEEeecC-------------CCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC
Confidence 4778877777776642 2235789999999632 2223344556677777776421
Q ss_pred --CCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHH
Q 003804 125 --EGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 175 (794)
Q Consensus 125 --~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~ 175 (794)
+.-...-..+..++.-.|...|+|++|.|+.--. -++|+. +++|++
T Consensus 460 SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn-lA~PdR----I~kIle 507 (980)
T KOG0447|consen 460 SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN-VASPSR----IQQIIE 507 (980)
T ss_pred CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhc-cCCHHH----HHHHHh
Confidence 1111222234567777888999999999986211 256664 555655
No 462
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.60 E-value=0.11 Score=55.22 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCccchHHH-HHHhhhccCceEEEEeCCC
Q 003804 88 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIE 125 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e-~~~~l~~~D~ailvvda~~ 125 (794)
..|.+.||||||+.....- ...++..+|.+|+++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 4689999999987531111 1123347999999998864
No 463
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=94.55 E-value=0.37 Score=50.77 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=48.0
Q ss_pred eEEEEEcCCCccc-------hH-HHHHHhhhccCceEEEEeCCCCcc--------hhHHHHHHHHHhcCCccEEEEecCc
Q 003804 90 YLINLIDSPGHVD-------FS-SEVTAALRITDGALVVVDCIEGVC--------VQTETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 90 ~~inlIDTPGh~d-------f~-~e~~~~l~~~D~ailvvda~~gv~--------~qt~~~~~~~~~~~~~~iv~iNKiD 153 (794)
....+|.|-|-++ |- .+-..+---.||+|-||||..... ..--+..+|+.- .=-+.+||.|
T Consensus 146 fD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~---AD~II~NKtD 222 (391)
T KOG2743|consen 146 FDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIAL---ADRIIMNKTD 222 (391)
T ss_pred cceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhh---hheeeecccc
Confidence 5567899999876 22 122222235799999999985411 111111122211 1247899999
Q ss_pred cchhccCCCHHHHHHHHHHHHHHhhhhhh
Q 003804 154 RCFLELQVDGEEAYQTFQKVIENANVIMA 182 (794)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (794)
+. . ++..+.+++.+..+|.+..
T Consensus 223 li----~---~e~~~~l~q~I~~INslA~ 244 (391)
T KOG2743|consen 223 LV----S---EEEVKKLRQRIRSINSLAQ 244 (391)
T ss_pred cc----C---HHHHHHHHHHHHHhhhHHH
Confidence 98 2 2445567777777776543
No 464
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.53 E-value=0.04 Score=55.83 Aligned_cols=68 Identities=24% Similarity=0.208 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCccch------HHHHHHhhhccCceEEEEeCCCCc---ch-hHH----HHHHHHHhcCCccEEEEecCc
Q 003804 88 NEYLINLIDSPGHVDF------SSEVTAALRITDGALVVVDCIEGV---CV-QTE----TVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 88 ~~~~inlIDTPGh~df------~~e~~~~l~~~D~ailvvda~~gv---~~-qt~----~~~~~~~~~~~~~iv~iNKiD 153 (794)
...++.++||||+++| ...+.+-++..|.-+.+|.-++.. .+ +-. ..+.-+.....|.|=++.|+|
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhH
Confidence 4567889999998764 334666676677655555444321 11 111 112333456778888999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 85
No 465
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.34 E-value=0.029 Score=60.64 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.5
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHH
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~L 31 (794)
+.+.++|++ +|-+++|||+++|.|
T Consensus 304 dkkqISVGf---iGYPNvGKSSiINTL 327 (572)
T KOG2423|consen 304 DKKQISVGF---IGYPNVGKSSIINTL 327 (572)
T ss_pred Cccceeeee---ecCCCCchHHHHHHH
Confidence 346788988 999999999999999
No 466
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=94.09 E-value=0.15 Score=54.64 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=55.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecch-hhhhccccccC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQ 86 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~ 86 (794)
.++++| ||-+++|||||.++|-. .... +++ +- =.||+.........+.. ..+..+.....
T Consensus 20 ~lkiGI---VGlPNvGKST~fnalT~--~~a~---~~N--fP---------F~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~ 80 (391)
T KOG1491|consen 20 NLKIGI---VGLPNVGKSTFFNALTK--SKAG---AAN--FP---------FCTIDPNEARVEVPDSRFDLLCPIYGPKS 80 (391)
T ss_pred cceeeE---eeCCCCchHHHHHHHhc--CCCC---ccC--CC---------cceeccccceeecCchHHHHHHHhcCCcc
Confidence 456766 99999999999999932 1110 111 00 12444433333222111 00011111222
Q ss_pred CCceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCC
Q 003804 87 GNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (794)
...-.+++.|.+|-.. +-.....-+|.+|+.+-||++-+
T Consensus 81 ~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 81 KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 3345799999999643 22235567789999999999864
No 467
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.97 E-value=0.14 Score=54.54 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCccchH-HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH---hcCCccE-EEEecCc
Q 003804 88 NEYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPV-LTVNKMD 153 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~-~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~---~~~~~~i-v~iNKiD 153 (794)
.+|.+.||||||..-.. .....++..||.+|+|+.+..--......+++.+. ..+++.. +++|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 45889999999864211 01122345899999999875332222223333333 3355554 7888754
No 468
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=0.11 Score=64.92 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=40.9
Q ss_pred ceEEEEEcCCCc------cchHHH-----------HHHhhhccCceEEEEeCCCCcc--hhHH-HH----------HHHH
Q 003804 89 EYLINLIDSPGH------VDFSSE-----------VTAALRITDGALVVVDCIEGVC--VQTE-TV----------LRQA 138 (794)
Q Consensus 89 ~~~inlIDTPGh------~df~~e-----------~~~~l~~~D~ailvvda~~gv~--~qt~-~~----------~~~~ 138 (794)
...-.+|||.|- .++... -.+..+..||+|+.+|..+=.+ ++.. .+ +++.
T Consensus 173 ~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t 252 (1188)
T COG3523 173 TDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET 252 (1188)
T ss_pred ccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999992 112211 2244567899999999875322 2222 11 1222
Q ss_pred HhcCCccEEEEecCccc
Q 003804 139 LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 139 ~~~~~~~iv~iNKiD~~ 155 (794)
....+|+-+++||+|+.
T Consensus 253 L~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 253 LHARLPVYLVLTKADLL 269 (1188)
T ss_pred hccCCceEEEEeccccc
Confidence 34567989999999985
No 469
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=0.12 Score=52.66 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=46.5
Q ss_pred eEEEEEcCCCccchHH---HHHHhhhccCceEEEEeCCCCc-chhHHHHHHHHHhcCC-c---cEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSS---EVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-R---PVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~---e~~~~l~~~D~ailvvda~~gv-~~qt~~~~~~~~~~~~-~---~iv~iNKiD~~ 155 (794)
..+.+||-||+.+|.. .-+.-.+.+.+.|+||||.+.- .+-++.+...+.++++ | .=++|-|.|-+
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 3567899999988654 3456678889999999998653 3444444455555554 3 33899999965
No 470
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.71 E-value=0.26 Score=52.73 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCccchHH-HHHHhhhccCceEEEEeCCC
Q 003804 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~-e~~~~l~~~D~ailvvda~~ 125 (794)
..|.+.||||||..-... .+..++..||.+|+++.+..
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~ 153 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP 153 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchH
Confidence 368999999998532111 12234567999999999874
No 471
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.64 Score=44.87 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHH
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
....+|.| -|++|+|||||+..+.
T Consensus 3 ~~~mki~I---TG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFI---TGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEE---eCCCCccHHHHHHHHH
Confidence 45678988 9999999999999884
No 472
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.44 E-value=0.21 Score=53.24 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCccchHHH-HHHhhhccCceEEEEeCCCCcchhHHHHHH---HHH-hcCCccE-EEEec
Q 003804 88 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLR---QAL-GERIRPV-LTVNK 151 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e-~~~~l~~~D~ailvvda~~gv~~qt~~~~~---~~~-~~~~~~i-v~iNK 151 (794)
+.|.+.||||||+.-...- ...++..+|.+|+++.+..--......+++ .+. ..+++.. ++.|+
T Consensus 114 ~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 114 DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 3589999999986521110 112345789999999887533333333332 222 2355544 45554
No 473
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=93.30 E-value=0.25 Score=39.05 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=26.9
Q ss_pred HHHHhhh-ccCceEEEEeCCCCcc--hhHH-HHHHHHHhc--CCccEEEEecCc
Q 003804 106 EVTAALR-ITDGALVVVDCIEGVC--VQTE-TVLRQALGE--RIRPVLTVNKMD 153 (794)
Q Consensus 106 e~~~~l~-~~D~ailvvda~~gv~--~qt~-~~~~~~~~~--~~~~iv~iNKiD 153 (794)
..+.|++ ..+.+++++|.++... .... .+++.+... +.|.++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4566776 5577889999986432 2222 244555443 789999999998
No 474
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=93.19 E-value=0.21 Score=52.20 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
+++.+.|||||+..+ ..+..++..+|.+|+|+++...-...+....+.+...+.+.+ +++|+.+..
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 468999999999765 456778889999999999875444455555556666677654 899999864
No 475
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.09 E-value=0.15 Score=54.41 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.6
Q ss_pred EEEcccccCCCCChhHHHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
|+| +|..|+|||||+.+|+.
T Consensus 4 i~i---~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 4 LSI---VGYKATGKTTLVERLVD 23 (274)
T ss_pred EEE---ECCCCCCHHHHHHHHHH
Confidence 566 89999999999999964
No 476
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=92.92 E-value=0.25 Score=55.00 Aligned_cols=54 Identities=19% Similarity=0.036 Sum_probs=38.8
Q ss_pred ccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 100 HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 100 h~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+|...+....+.+|.+++|+|+.+-...-...+.+.+ .+.|+++++||+|+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl 103 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLL 103 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhC
Confidence 446777666666889999999999876544333343332 267889999999986
No 477
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=92.92 E-value=0.51 Score=49.91 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=52.4
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCC-CcchhHHHHHHHHHhcCCcc---EEEEecCccchhccCCCHHH
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRP---VLTVNKMDRCFLELQVDGEE 165 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~-gv~~qt~~~~~~~~~~~~~~---iv~iNKiD~~~~~~~~~~~~ 165 (794)
+.+.|||||+-.. .++..++..+|.+|+|....- +++ .+....+.+.+.+.+. .+++|+++-. .+..+
T Consensus 113 ~D~iliD~~aGl~--~~~~~~~~~sd~~viVt~pe~~si~-~A~~~i~~~~~~~~~~~~~~vV~N~v~~~-----~e~~~ 184 (262)
T COG0455 113 YDYILIDTGAGLS--RDTLSFILSSDELVIVTTPEPTSIT-DAYKTIKILSKLGLDLLGRRVVLNRVRST-----KEGVD 184 (262)
T ss_pred CCEEEEeCCCCcc--HHHHHHHHhcCcEEEEeCCCcchHH-HHHHHHHHHHHcCCccccceEEEEecccc-----cchhH
Confidence 4789999998643 567777878899999988753 333 3444557777777764 3899999832 33344
Q ss_pred HHHHHHHHHHH
Q 003804 166 AYQTFQKVIEN 176 (794)
Q Consensus 166 ~~~~~~~~~~~ 176 (794)
....+.+...+
T Consensus 185 ~~~~~~~~~~~ 195 (262)
T COG0455 185 VAALLIQVVKQ 195 (262)
T ss_pred HHHHHHHHHHh
Confidence 44445544443
No 478
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=92.62 E-value=0.23 Score=38.90 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=49.9
Q ss_pred EEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCc
Q 003804 685 IQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 743 (794)
Q Consensus 685 I~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~ 743 (794)
|.+|-...|.|-..|.+..+.|.+.+..+ .+.+...+|..+.-.|...|..+|+|+
T Consensus 1 i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~---~V~~~v~v~~~~~~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 1 ISCDYSQYGKVERLLEQNGIEIVDEDYTD---DVTLTVAVPEEEVEEFKAQLTDLTSGR 56 (56)
T ss_dssp EEE-CCCHHHHHHHHHHTTTEEEEEEECT---TEEEEEEEECCCHHHHHHHHHHHTTT-
T ss_pred CEechhhHHHHHHHHHHCCCEEEcceecc---eEEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 57888999999999999999999988754 589999999999999999999999996
No 479
>KOG2484 consensus GTPase [General function prediction only]
Probab=92.50 E-value=0.14 Score=55.87 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=22.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
+.+.|+| +|-+++||||++++|.....
T Consensus 251 ~sIrvGV---iG~PNVGKSSvINsL~~~k~ 277 (435)
T KOG2484|consen 251 TSIRVGI---IGYPNVGKSSVINSLKRRKA 277 (435)
T ss_pred cceEeee---ecCCCCChhHHHHHHHHhcc
Confidence 4466666 99999999999999976554
No 480
>PRK12289 GTPase RsgA; Reviewed
Probab=92.49 E-value=0.32 Score=53.74 Aligned_cols=46 Identities=26% Similarity=0.191 Sum_probs=35.6
Q ss_pred hhhccCceEEEEeCCCCc-ch-hHHHHHHHHHhcCCccEEEEecCccc
Q 003804 110 ALRITDGALVVVDCIEGV-CV-QTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 110 ~l~~~D~ailvvda~~gv-~~-qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+++.+|.+++|+|+.+.. .. +..+.+..+...++|+++|+||+|+.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 578899999999998543 33 33445556667899999999999986
No 481
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=92.37 E-value=0.77 Score=40.60 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=49.8
Q ss_pred EEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccc
Q 003804 371 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 450 (794)
Q Consensus 371 ~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~ 450 (794)
+|.-.-.++..|. ++-+=|++|+|+.||.+.+.. . . -||..++- ..-..+++|.+|+.+-+.|++
T Consensus 4 ~ViE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G~-~--~--------GkVr~~~d---~~g~~v~~a~Ps~~v~i~g~~ 68 (95)
T cd03701 4 TVIESKLDKGRGP-VATVIVQNGTLKKGDVIVAGG-T--Y--------GKIRTMVD---ENGKALLEAGPSTPVEILGLK 68 (95)
T ss_pred EEEEEEecCCCCe-eEEEEEEcCeEecCCEEEECC-c--c--------ceEEEEEC---CCCCCccccCCCCCEEEeeec
Confidence 3333334566676 899999999999999997521 1 1 25555554 445579999999999999987
Q ss_pred cccccce
Q 003804 451 QYITKNA 457 (794)
Q Consensus 451 ~~~~~tg 457 (794)
+. ...|
T Consensus 69 ~~-p~aG 74 (95)
T cd03701 69 DV-PKAG 74 (95)
T ss_pred CC-ccCC
Confidence 75 3444
No 482
>PRK01889 GTPase RsgA; Reviewed
Probab=92.35 E-value=0.17 Score=56.19 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
.+++ +|++|+|||||++.|+...
T Consensus 197 ~~~l---vG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVAL---LGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEE---ECCCCccHHHHHHHHHHhc
Confidence 5677 9999999999999997543
No 483
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=92.31 E-value=0.87 Score=48.50 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCccchHH-HHHHhhhccCceEEEEeCCCCcchhHHHHH---HHHH-hcCCccE-EEEecC
Q 003804 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVL---RQAL-GERIRPV-LTVNKM 152 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~-e~~~~l~~~D~ailvvda~~gv~~qt~~~~---~~~~-~~~~~~i-v~iNKi 152 (794)
+.|.+.||||||..-... ....++..||.+|+++.+..--......++ +... ..++... +++||.
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 468999999998642111 112234489999999977543222223333 3332 2344433 678864
No 484
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=92.16 E-value=0.11 Score=58.38 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
+.|++ ||-+|+||||++|+|..
T Consensus 315 vtVG~---VGYPNVGKSSTINaLvG 336 (562)
T KOG1424|consen 315 VTVGF---VGYPNVGKSSTINALVG 336 (562)
T ss_pred eEEEe---ecCCCCchhHHHHHHhc
Confidence 45555 99999999999999943
No 485
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.14 E-value=0.15 Score=41.23 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.3
Q ss_pred ccCCCCChhHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~ 33 (794)
.|+.|+|||||++++.+
T Consensus 29 ~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAIQT 45 (62)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999999843
No 486
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=92.13 E-value=0.018 Score=56.10 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=76.4
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
+++-| +|..++|||++..+-+.++--.+-. --|.++...-.+.|+. ..
T Consensus 26 ~k~lV---ig~~~vgkts~i~ryv~~nfs~~yR----------------AtIgvdfalkVl~wdd-------------~t 73 (229)
T KOG4423|consen 26 FKVLV---IGDLGVGKTSSIKRYVHQNFSYHYR----------------ATIGVDFALKVLQWDD-------------KT 73 (229)
T ss_pred hhhhe---eeeccccchhHHHHHHHHHHHHHHH----------------HHHhHHHHHHHhccCh-------------HH
Confidence 46666 8999999999999876543211100 0011122222334541 11
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc------C--CccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE------R--IRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~------~--~~~iv~iNKiD~~ 155 (794)
-.+..|||..|+..|...+--..+.+.++.+|+|.+.........-|.+-+.. + +|+++..||.|..
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 34678999999999988888888999999999999877665555556554322 2 3678899999986
No 487
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=92.11 E-value=0.24 Score=51.96 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred HhhhccCceEEEEeCCCCc-chhHH-HHHHHHHhcCCccEEEEecCccc
Q 003804 109 AALRITDGALVVVDCIEGV-CVQTE-TVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 109 ~~l~~~D~ailvvda~~gv-~~qt~-~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..++.+|++++|+|+.+.. ..... +.+..+...++|+++++||+|+.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 4688999999999998644 33333 33345556789999999999986
No 488
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.06 E-value=0.36 Score=52.73 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=61.4
Q ss_pred hhCcccccceEEEEeecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc---------
Q 003804 57 ERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--------- 127 (794)
Q Consensus 57 ~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv--------- 127 (794)
-|--|.+...+.|.++ +..+-++|.+|+.-=..-.....-.++++|++|+-++--
T Consensus 178 ~R~~T~GI~e~~F~~k----------------~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~ 241 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIK----------------GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETT 241 (354)
T ss_pred hccCcCCeeEEEEEeC----------------CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccch
Confidence 4566666666666664 789999999999776777888999999999999987531
Q ss_pred --chhHHHHHHHHHh----cCCccEEEEecCccc
Q 003804 128 --CVQTETVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 128 --~~qt~~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
...+..++..+.. .+.++|+|+||+|+.
T Consensus 242 NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 242 NRMHESLKLFESICNNKWFANTSIILFLNKKDLF 275 (354)
T ss_pred hHHHHHHHHHHHHhcCcccccCcEEEEeecHHHH
Confidence 2233444554443 245889999999986
No 489
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=91.97 E-value=0.64 Score=48.63 Aligned_cols=67 Identities=21% Similarity=0.156 Sum_probs=43.0
Q ss_pred ccCCCceEEEEEcCCCc-cchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEe
Q 003804 84 ERQGNEYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVN 150 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh-~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iN 150 (794)
..+.....+.+||||.- .|-.-.+...++.+||||+|=-..+--....++-...+.+.++|++ ++-|
T Consensus 151 ~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVEN 219 (300)
T KOG3022|consen 151 DVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVEN 219 (300)
T ss_pred cCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEec
Confidence 45556678889999863 3433345666777799888754333222233455678889999988 4554
No 490
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=91.72 E-value=0.33 Score=51.02 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCC-ccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~-~~iv~iNKiD~~ 155 (794)
.+.+.|||||+..+ ..+..++..+|.+|+|+.+...-...+..+++.+...+. +..+++|+++..
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCch
Confidence 58899999999764 355678899999999999886666666777777766665 455899999753
No 491
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=91.68 E-value=0.89 Score=41.16 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=48.1
Q ss_pred ecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecC-------ceeeeCccc--CCCEEEEe
Q 003804 377 PASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGK-------KQETVEDVP--CGNTVAMV 447 (794)
Q Consensus 377 ~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~-------~~~~v~~a~--AGdI~ai~ 447 (794)
.++..|. .+-+=||+|+|+.||.+.+.+.+ | ...-||..|+...+. +...++++. +|=-+.+.
T Consensus 10 ~~~G~G~-t~dvIl~~GtL~~GD~Iv~g~~~---G----pi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 10 EEEGLGT-TIDVILYDGTLREGDTIVVCGLN---G----PIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred EcCCCce-EEEEEEECCeEecCCEEEEccCC---C----CceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 3566676 88889999999999999875422 1 112378888877774 345677777 67767777
Q ss_pred ccccc
Q 003804 448 GLDQY 452 (794)
Q Consensus 448 gl~~~ 452 (794)
||++.
T Consensus 82 gL~~v 86 (110)
T cd03703 82 DLEKA 86 (110)
T ss_pred CCccc
Confidence 78776
No 492
>PRK01889 GTPase RsgA; Reviewed
Probab=91.56 E-value=0.43 Score=53.00 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=38.0
Q ss_pred hhccCceEEEEeCCCCcch-hHHHHHHHHHhcCCccEEEEecCccc
Q 003804 111 LRITDGALVVVDCIEGVCV-QTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 111 l~~~D~ailvvda~~gv~~-qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+|.+++|+++...... ...+.+..+...++++++++||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4678999999999877666 45567778888999999999999996
No 493
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=91.49 E-value=0.45 Score=49.73 Aligned_cols=64 Identities=19% Similarity=0.092 Sum_probs=53.8
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
-.+.|||||.-.- ..+..++..+|.||+|--.+.--....+++++.+...++|..+++||-+.-
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 4789999996432 568999999999999999886555677888899999999999999999543
No 494
>PRK00098 GTPase RsgA; Reviewed
Probab=91.28 E-value=0.42 Score=51.67 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=33.9
Q ss_pred hhhccCceEEEEeCCCCcch-h-HHHHHHHHHhcCCccEEEEecCccc
Q 003804 110 ALRITDGALVVVDCIEGVCV-Q-TETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 110 ~l~~~D~ailvvda~~gv~~-q-t~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.++.+|.+++|+|+.+.... . ..+.+..+...++|+++++||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 46889999999999754321 2 1334445667889999999999985
No 495
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.22 E-value=0.18 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.3
Q ss_pred EEEcccccCCCCChhHHHHHHHHHcC
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
|+| .|.+||||||++..|....|
T Consensus 2 I~I---~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 III---SGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEE---EESTTSSHHHHHHHHHHHHT
T ss_pred EEE---ECCCCCCHHHHHHHHHHHHC
Confidence 556 89999999999999966544
No 496
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.14 E-value=0.27 Score=45.22 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.1
Q ss_pred EEEcccccCCCCChhHHHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
|++ .|..|+||||++..|..
T Consensus 2 i~~---~GkgG~GKTt~a~~la~ 21 (116)
T cd02034 2 IAI---TGKGGVGKTTIAALLAR 21 (116)
T ss_pred EEE---ECCCCCCHHHHHHHHHH
Confidence 566 89999999999998854
No 497
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.00 E-value=2.2 Score=40.76 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=16.8
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|+|||||++.|
T Consensus 28 ~~~i---~G~nGsGKStLl~~l 46 (144)
T cd03221 28 RIGL---VGRNGAGKSTLLKLI 46 (144)
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4456 899999999999999
No 498
>CHL00175 minD septum-site determining protein; Validated
Probab=90.97 E-value=0.43 Score=51.04 Aligned_cols=65 Identities=23% Similarity=0.180 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~ 155 (794)
.+.+.|||||+..+ ..+..++..+|.+++|+++...-...+..+++.+...+.+ .-+++|+.+..
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 68899999999754 4567788899999999998765555666666777666664 44889998753
No 499
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.83 E-value=0.21 Score=49.64 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=22.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIA 39 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~ 39 (794)
+|.| +|++||||||++..|....+..+
T Consensus 2 riii---lG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILI---LGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhCCcE
Confidence 5778 99999999999999987766544
No 500
>KOG2484 consensus GTPase [General function prediction only]
Probab=90.73 E-value=0.6 Score=51.18 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=47.6
Q ss_pred EEEEcCCCcc-chHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH-hcC-CccEEEEecCccc
Q 003804 92 INLIDSPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-GER-IRPVLTVNKMDRC 155 (794)
Q Consensus 92 inlIDTPGh~-df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~-~~~-~~~iv~iNKiD~~ 155 (794)
.+-.|-+++. -|..|....+..+|.+|-|+||.+........+=++.. ..| ...|+|+||+|++
T Consensus 124 ~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLV 190 (435)
T KOG2484|consen 124 ENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLV 190 (435)
T ss_pred hhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccC
Confidence 4456666664 37788889999999999999999876554444444443 344 7889999999998
Done!