Query 003804
Match_columns 794
No_of_seqs 300 out of 2366
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 04:36:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 1E-144 5E-149 1310.7 76.9 782 7-794 18-842 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 5E-120 2E-124 1081.6 56.8 658 6-760 11-700 (709)
3 2rdo_7 EF-G, elongation factor 100.0 3E-113 1E-117 1018.4 68.3 663 6-773 8-701 (704)
4 2xex_A Elongation factor G; GT 100.0 5E-111 2E-115 999.4 58.3 655 6-774 8-690 (693)
5 1dar_A EF-G, elongation factor 100.0 2E-111 6E-116 1003.1 53.9 654 6-772 10-689 (691)
6 3j25_A Tetracycline resistance 100.0 7E-115 3E-119 1024.0 17.8 597 8-765 2-621 (638)
7 2dy1_A Elongation factor G; tr 100.0 9E-104 3E-108 933.9 61.0 634 1-775 1-662 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 9.7E-78 3.3E-82 694.3 33.6 463 7-582 30-523 (548)
9 2ywe_A GTP-binding protein LEP 100.0 1.2E-74 4.2E-79 669.6 45.8 489 6-776 4-522 (600)
10 3cb4_D GTP-binding protein LEP 100.0 3.7E-72 1.3E-76 650.5 43.6 485 7-776 3-517 (599)
11 2h5e_A Peptide chain release f 100.0 7.6E-62 2.6E-66 559.4 33.0 441 7-563 12-477 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 1.3E-60 4.3E-65 548.6 31.6 440 7-563 12-476 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 4.3E-39 1.5E-43 340.7 20.2 196 445-762 2-209 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 2E-29 7E-34 284.6 27.8 286 6-464 15-328 (439)
15 1d2e_A Elongation factor TU (E 100.0 6.2E-30 2.1E-34 285.6 19.2 284 7-463 2-290 (397)
16 1g7s_A Translation initiation 100.0 5.4E-30 1.9E-34 297.6 19.1 330 7-503 4-373 (594)
17 2c78_A Elongation factor TU-A; 100.0 4.8E-29 1.6E-33 279.4 25.5 293 6-463 9-308 (405)
18 1jny_A EF-1-alpha, elongation 100.0 3.9E-29 1.3E-33 282.4 19.1 289 6-464 4-318 (435)
19 3mca_A HBS1, elongation factor 100.0 1.1E-28 3.7E-33 287.7 15.0 288 6-464 175-490 (592)
20 3p26_A Elongation factor 1 alp 100.0 6.1E-27 2.1E-31 267.9 27.6 297 7-464 32-363 (483)
21 1r5b_A Eukaryotic peptide chai 99.9 5.9E-27 2E-31 266.5 24.5 288 6-464 41-357 (467)
22 3avx_A Elongation factor TS, e 99.9 4E-27 1.4E-31 283.0 22.8 284 6-463 294-581 (1289)
23 1f60_A Elongation factor EEF1A 99.9 1.2E-26 4.2E-31 263.3 24.6 298 6-463 5-328 (458)
24 1zun_B Sulfate adenylate trans 99.9 1.7E-26 6E-31 260.7 24.2 286 7-464 23-327 (434)
25 1kk1_A EIF2gamma; initiation o 99.9 8E-26 2.7E-30 253.6 28.1 133 6-155 8-150 (410)
26 2elf_A Protein translation elo 99.9 2.2E-26 7.5E-31 253.6 21.5 101 10-154 23-125 (370)
27 3izq_1 HBS1P, elongation facto 99.9 2E-26 6.8E-31 269.3 21.0 294 7-464 166-497 (611)
28 1s0u_A EIF-2-gamma, translatio 99.9 1.1E-24 3.6E-29 244.2 24.9 133 6-155 6-148 (408)
29 1zo1_I IF2, translation initia 99.9 1E-26 3.6E-31 263.7 5.0 301 7-513 3-334 (501)
30 1wb1_A Translation elongation 99.9 3.1E-25 1E-29 253.0 13.7 121 7-155 18-138 (482)
31 3sjy_A Translation initiation 99.9 1E-23 3.4E-28 235.9 22.9 133 6-155 6-142 (403)
32 3izy_P Translation initiation 99.9 2.3E-25 7.7E-30 254.8 7.1 257 7-464 3-260 (537)
33 1wf3_A GTP-binding protein; GT 99.6 2.2E-14 7.6E-19 153.5 15.3 116 6-155 5-130 (301)
34 2lkc_A Translation initiation 99.5 8.6E-15 2.9E-19 143.1 8.2 117 4-155 4-120 (178)
35 2xtp_A GTPase IMAP family memb 99.5 8.9E-14 3.1E-18 145.6 14.7 115 7-155 21-152 (260)
36 3iev_A GTP-binding protein ERA 99.5 1E-13 3.4E-18 149.1 15.1 117 6-155 8-135 (308)
37 2hjg_A GTP-binding protein ENG 99.5 3.1E-14 1.1E-18 160.6 11.3 115 7-155 174-299 (436)
38 1ega_A Protein (GTP-binding pr 99.5 4.9E-14 1.7E-18 151.0 10.8 115 6-155 6-129 (301)
39 3lxw_A GTPase IMAP family memb 99.5 3.5E-13 1.2E-17 140.2 13.9 123 7-167 20-160 (247)
40 4dcu_A GTP-binding protein ENG 99.5 1.7E-13 5.9E-18 155.4 12.6 115 7-155 194-319 (456)
41 4dhe_A Probable GTP-binding pr 99.5 1.7E-13 5.8E-18 139.5 10.6 116 7-155 28-157 (223)
42 3qq5_A Small GTP-binding prote 99.4 9E-14 3.1E-18 155.1 7.2 114 7-155 33-153 (423)
43 2dyk_A GTP-binding protein; GT 99.4 7.4E-13 2.5E-17 126.9 12.4 113 9-155 2-121 (161)
44 1ky3_A GTP-binding protein YPT 99.4 5.8E-13 2E-17 130.3 11.7 123 1-155 1-131 (182)
45 3tw8_B RAS-related protein RAB 99.4 4.3E-13 1.5E-17 131.1 8.0 122 1-155 2-126 (181)
46 2bme_A RAB4A, RAS-related prot 99.4 1.2E-12 4.2E-17 128.8 11.2 122 1-155 3-128 (186)
47 1vg8_A RAS-related protein RAB 99.4 7.4E-13 2.5E-17 132.8 9.3 122 1-155 1-130 (207)
48 4bas_A ADP-ribosylation factor 99.4 1.6E-12 5.5E-17 129.4 11.5 114 6-155 15-140 (199)
49 1r8s_A ADP-ribosylation factor 99.4 4E-12 1.4E-16 122.3 13.6 109 9-155 1-114 (164)
50 2hxs_A RAB-26, RAS-related pro 99.4 3.3E-12 1.1E-16 124.6 12.8 118 6-155 4-128 (178)
51 1z0f_A RAB14, member RAS oncog 99.4 6.3E-12 2.1E-16 122.5 14.8 116 7-155 14-133 (179)
52 3t1o_A Gliding protein MGLA; G 99.4 1.2E-12 4.3E-17 129.7 9.8 128 6-155 12-148 (198)
53 2il1_A RAB12; G-protein, GDP, 99.4 1.9E-12 6.5E-17 128.8 11.1 116 7-155 25-144 (192)
54 1upt_A ARL1, ADP-ribosylation 99.4 1.7E-12 5.8E-17 125.7 10.5 112 6-155 5-121 (171)
55 1svi_A GTP-binding protein YSX 99.4 2.2E-12 7.5E-17 128.1 11.6 113 7-155 22-147 (195)
56 1zd9_A ADP-ribosylation factor 99.4 4.7E-12 1.6E-16 125.4 13.9 113 6-155 20-137 (188)
57 1ek0_A Protein (GTP-binding pr 99.4 3E-12 1E-16 123.5 12.1 116 7-155 2-121 (170)
58 1wms_A RAB-9, RAB9, RAS-relate 99.4 5.1E-12 1.7E-16 123.1 13.4 117 6-155 5-129 (177)
59 3bc1_A RAS-related protein RAB 99.4 4.8E-12 1.7E-16 125.0 13.4 124 6-155 9-140 (195)
60 3kkq_A RAS-related protein M-R 99.4 2.3E-12 7.8E-17 126.6 10.9 116 6-155 16-136 (183)
61 2g6b_A RAS-related protein RAB 99.3 3.1E-12 1.1E-16 125.0 11.6 118 6-155 8-129 (180)
62 2efe_B Small GTP-binding prote 99.3 2.2E-12 7.4E-17 126.3 10.4 117 6-155 10-130 (181)
63 1m2o_B GTP-binding protein SAR 99.3 4.1E-12 1.4E-16 126.3 12.5 112 6-155 21-137 (190)
64 2fh5_B SR-beta, signal recogni 99.3 8.6E-12 2.9E-16 126.0 15.0 131 6-176 5-146 (214)
65 2fu5_C RAS-related protein RAB 99.3 8.4E-13 2.9E-17 129.7 7.1 122 1-155 1-126 (183)
66 3clv_A RAB5 protein, putative; 99.3 7.9E-12 2.7E-16 124.3 14.3 65 90-154 93-159 (208)
67 3tkl_A RAS-related protein RAB 99.3 1.7E-12 5.7E-17 129.0 9.3 117 6-155 14-134 (196)
68 1mky_A Probable GTP-binding pr 99.3 2.9E-12 1E-16 144.5 12.2 112 10-155 3-123 (439)
69 1x3s_A RAS-related protein RAB 99.3 6.3E-12 2.2E-16 124.5 13.3 118 5-155 12-134 (195)
70 2fn4_A P23, RAS-related protei 99.3 2.9E-12 9.8E-17 125.2 10.5 120 1-155 2-127 (181)
71 1u8z_A RAS-related protein RAL 99.3 1E-11 3.5E-16 119.3 14.1 114 7-155 3-122 (168)
72 1f6b_A SAR1; gtpases, N-termin 99.3 4E-12 1.4E-16 127.3 11.2 112 6-155 23-139 (198)
73 1r2q_A RAS-related protein RAB 99.3 3.9E-12 1.3E-16 122.7 10.8 117 6-155 4-124 (170)
74 3llu_A RAS-related GTP-binding 99.3 7.5E-12 2.6E-16 124.9 13.1 117 6-155 18-142 (196)
75 3def_A T7I23.11 protein; chlor 99.3 3.6E-12 1.2E-16 133.7 11.3 115 7-155 35-164 (262)
76 3k53_A Ferrous iron transport 99.3 1.4E-12 4.8E-17 137.5 8.1 111 8-155 3-122 (271)
77 2h57_A ADP-ribosylation factor 99.3 3.9E-12 1.3E-16 126.0 10.9 114 6-155 19-139 (190)
78 1z2a_A RAS-related protein RAB 99.3 3.6E-12 1.2E-16 122.9 10.3 114 7-155 4-122 (168)
79 2bcg_Y Protein YP2, GTP-bindin 99.3 2.2E-12 7.5E-17 129.6 9.0 122 1-155 1-126 (206)
80 3i8s_A Ferrous iron transport 99.3 2.1E-12 7.1E-17 136.4 9.2 111 8-155 3-125 (274)
81 2hup_A RAS-related protein RAB 99.3 9.4E-12 3.2E-16 124.8 13.6 114 7-155 28-147 (201)
82 2fg5_A RAB-22B, RAS-related pr 99.3 6.3E-12 2.1E-16 124.9 12.1 116 7-155 22-141 (192)
83 2p5s_A RAS and EF-hand domain 99.3 2.7E-12 9.2E-17 128.3 9.5 116 7-155 27-146 (199)
84 1kao_A RAP2A; GTP-binding prot 99.3 5E-12 1.7E-16 121.4 10.9 114 7-155 2-121 (167)
85 2gj8_A MNME, tRNA modification 99.3 5.2E-12 1.8E-16 123.4 11.1 115 7-155 3-128 (172)
86 1zbd_A Rabphilin-3A; G protein 99.3 2.9E-12 9.9E-17 128.3 9.4 116 7-155 7-126 (203)
87 1ksh_A ARF-like protein 2; sma 99.3 4.3E-12 1.5E-16 125.0 10.5 112 6-155 16-132 (186)
88 1z08_A RAS-related protein RAB 99.3 4.9E-12 1.7E-16 122.3 10.6 117 6-155 4-124 (170)
89 2y8e_A RAB-protein 6, GH09086P 99.3 4.8E-12 1.6E-16 123.3 10.5 116 7-155 13-132 (179)
90 1c1y_A RAS-related protein RAP 99.3 6.7E-12 2.3E-16 120.8 11.4 115 7-155 2-121 (167)
91 3pqc_A Probable GTP-binding pr 99.3 9E-12 3.1E-16 123.3 12.6 111 8-155 23-146 (195)
92 2oil_A CATX-8, RAS-related pro 99.3 5.8E-12 2E-16 125.0 11.1 116 7-155 24-143 (193)
93 1g16_A RAS-related protein SEC 99.3 4.6E-12 1.6E-16 122.3 10.0 116 7-155 2-121 (170)
94 3iby_A Ferrous iron transport 99.3 2.7E-12 9.3E-17 134.1 8.8 109 10-155 3-123 (256)
95 2hjg_A GTP-binding protein ENG 99.3 1.5E-12 5E-17 146.9 7.2 113 9-155 4-124 (436)
96 2erx_A GTP-binding protein DI- 99.3 7.4E-12 2.5E-16 121.0 11.2 115 7-155 2-122 (172)
97 4dsu_A GTPase KRAS, isoform 2B 99.3 6.9E-12 2.4E-16 123.4 11.1 115 7-155 3-122 (189)
98 1mky_A Probable GTP-binding pr 99.3 8.8E-12 3E-16 140.6 13.5 115 7-155 179-305 (439)
99 3a1s_A Iron(II) transport prot 99.3 5.3E-12 1.8E-16 132.1 10.8 112 7-155 4-123 (258)
100 1zj6_A ADP-ribosylation factor 99.3 5.7E-12 2E-16 124.5 10.5 112 6-155 14-130 (187)
101 1z0j_A RAB-22, RAS-related pro 99.3 6E-12 2.1E-16 121.5 10.4 116 7-155 5-124 (170)
102 1fzq_A ADP-ribosylation factor 99.3 1E-11 3.4E-16 122.4 12.2 112 6-155 14-130 (181)
103 2h17_A ADP-ribosylation factor 99.3 3.6E-12 1.2E-16 125.3 8.9 111 7-155 20-135 (181)
104 2b6h_A ADP-ribosylation factor 99.3 4.5E-12 1.6E-16 126.1 9.7 112 6-155 27-143 (192)
105 2a9k_A RAS-related protein RAL 99.3 2E-11 6.9E-16 119.7 14.2 115 6-155 16-136 (187)
106 2gf9_A RAS-related protein RAB 99.3 3.9E-12 1.3E-16 125.9 9.1 116 7-155 21-140 (189)
107 2ce2_X GTPase HRAS; signaling 99.3 1.1E-11 3.8E-16 118.6 12.1 113 8-155 3-121 (166)
108 2a5j_A RAS-related protein RAB 99.3 5E-12 1.7E-16 125.4 9.8 117 6-155 19-139 (191)
109 2wji_A Ferrous iron transport 99.3 9.8E-12 3.4E-16 120.4 11.6 111 8-155 3-121 (165)
110 1z06_A RAS-related protein RAB 99.3 8.2E-12 2.8E-16 123.6 11.0 116 7-155 19-140 (189)
111 2ew1_A RAS-related protein RAB 99.3 8.9E-12 3.1E-16 125.2 11.2 114 7-155 25-144 (201)
112 3r7w_A Gtpase1, GTP-binding pr 99.3 1.7E-11 5.8E-16 131.6 14.0 116 7-155 2-128 (307)
113 3t5g_A GTP-binding protein RHE 99.3 4.9E-12 1.7E-16 123.9 9.0 115 6-155 4-124 (181)
114 2yc2_C IFT27, small RAB-relate 99.3 7.2E-12 2.5E-16 125.4 10.3 117 6-155 18-145 (208)
115 1mh1_A RAC1; GTP-binding, GTPa 99.3 6E-12 2E-16 123.6 9.5 114 7-155 4-122 (186)
116 3dz8_A RAS-related protein RAB 99.3 5.7E-12 2E-16 125.0 9.3 117 6-155 21-141 (191)
117 2nzj_A GTP-binding protein REM 99.3 8.4E-12 2.9E-16 121.2 9.8 115 7-155 3-124 (175)
118 3cph_A RAS-related protein SEC 99.3 4.6E-12 1.6E-16 127.6 8.1 116 7-155 19-138 (213)
119 2bov_A RAla, RAS-related prote 99.3 3.5E-11 1.2E-15 120.3 14.5 114 7-155 13-132 (206)
120 3reg_A RHO-like small GTPase; 99.3 1.5E-11 5.3E-16 122.1 11.7 116 6-155 21-140 (194)
121 3con_A GTPase NRAS; structural 99.3 1.5E-11 5.3E-16 121.5 11.7 114 7-155 20-139 (190)
122 3l0i_B RAS-related protein RAB 99.3 1.1E-12 3.6E-17 131.3 3.1 117 6-155 31-151 (199)
123 4dcu_A GTP-binding protein ENG 99.3 2.4E-12 8.2E-17 146.0 6.4 114 8-155 23-144 (456)
124 3t5d_A Septin-7; GTP-binding p 99.3 2.8E-11 9.7E-16 127.7 14.2 123 7-155 7-157 (274)
125 2o52_A RAS-related protein RAB 99.3 5.3E-12 1.8E-16 126.5 8.1 116 7-155 24-143 (200)
126 2atx_A Small GTP binding prote 99.3 1.6E-11 5.4E-16 121.9 11.5 115 6-155 16-135 (194)
127 1moz_A ARL1, ADP-ribosylation 99.3 6.1E-12 2.1E-16 123.4 8.3 112 6-155 16-132 (183)
128 2x77_A ADP-ribosylation factor 99.3 5.9E-12 2E-16 124.5 8.0 112 6-155 20-136 (189)
129 1nrj_B SR-beta, signal recogni 99.3 2.9E-11 9.9E-16 122.4 13.1 111 6-155 10-133 (218)
130 3lxx_A GTPase IMAP family memb 99.3 1.9E-11 6.5E-16 126.2 11.8 115 7-155 28-158 (239)
131 3gee_A MNME, tRNA modification 99.3 8.5E-12 2.9E-16 141.4 9.9 112 8-155 233-356 (476)
132 2f7s_A C25KG, RAS-related prot 99.3 5.5E-12 1.9E-16 127.7 7.6 126 7-155 24-154 (217)
133 1h65_A Chloroplast outer envel 99.3 3.3E-11 1.1E-15 126.8 13.7 115 7-155 38-167 (270)
134 1jwy_B Dynamin A GTPase domain 99.3 1E-11 3.5E-16 133.5 10.0 67 89-155 130-211 (315)
135 2j0v_A RAC-like GTP-binding pr 99.3 2.4E-11 8.1E-16 122.5 12.0 116 6-155 7-126 (212)
136 4gzl_A RAS-related C3 botulinu 99.2 8.5E-12 2.9E-16 125.4 8.5 116 6-155 28-147 (204)
137 3cpj_B GTP-binding protein YPT 99.2 1E-11 3.5E-16 126.6 9.1 116 7-155 12-131 (223)
138 3geh_A MNME, tRNA modification 99.2 9E-12 3.1E-16 140.7 9.5 113 7-155 223-343 (462)
139 2wjg_A FEOB, ferrous iron tran 99.2 1.6E-11 5.5E-16 121.0 10.1 112 7-155 6-125 (188)
140 1gwn_A RHO-related GTP-binding 99.2 1.5E-11 5E-16 124.0 9.8 121 1-155 21-145 (205)
141 3gj0_A GTP-binding nuclear pro 99.2 6.7E-12 2.3E-16 127.6 7.4 116 6-155 13-132 (221)
142 2qu8_A Putative nucleolar GTP- 99.2 4.8E-11 1.6E-15 122.1 13.8 115 6-155 27-155 (228)
143 3oes_A GTPase rhebl1; small GT 99.2 1.5E-11 5.3E-16 123.0 9.7 115 7-155 23-142 (201)
144 2gco_A H9, RHO-related GTP-bin 99.2 1.9E-11 6.5E-16 122.4 10.2 115 6-155 23-142 (201)
145 1m7b_A RND3/RHOE small GTP-bin 99.2 3.5E-11 1.2E-15 118.5 11.9 117 5-155 4-124 (184)
146 3bwd_D RAC-like GTP-binding pr 99.2 4.5E-12 1.5E-16 124.1 5.3 116 6-155 6-125 (182)
147 4djt_A GTP-binding nuclear pro 99.2 6.4E-12 2.2E-16 127.3 6.5 118 6-155 9-130 (218)
148 2gf0_A GTP-binding protein DI- 99.2 2.5E-11 8.6E-16 120.7 10.5 116 6-155 6-127 (199)
149 3q72_A GTP-binding protein RAD 99.2 9.8E-12 3.3E-16 119.8 6.8 113 8-155 2-119 (166)
150 3q85_A GTP-binding protein REM 99.2 2.4E-11 8.1E-16 117.4 9.2 115 8-155 2-122 (169)
151 3o47_A ADP-ribosylation factor 99.2 2.1E-11 7.1E-16 132.2 9.7 111 7-155 164-279 (329)
152 2fv8_A H6, RHO-related GTP-bin 99.2 2.4E-11 8.1E-16 122.3 9.4 114 7-155 24-142 (207)
153 2ged_A SR-beta, signal recogni 99.2 2E-11 6.7E-16 121.1 8.6 128 7-177 47-188 (193)
154 3q3j_B RHO-related GTP-binding 99.2 5.6E-11 1.9E-15 120.4 12.1 115 7-155 26-144 (214)
155 1xzp_A Probable tRNA modificat 99.2 2.4E-11 8.3E-16 137.8 10.1 112 8-155 243-363 (482)
156 3c5c_A RAS-like protein 12; GD 99.2 1.1E-10 3.7E-15 115.5 12.9 115 6-155 19-140 (187)
157 2atv_A RERG, RAS-like estrogen 99.2 1.7E-10 5.8E-15 114.8 14.2 114 6-155 26-145 (196)
158 2q3h_A RAS homolog gene family 99.2 2.8E-11 9.5E-16 120.9 8.4 115 6-155 18-137 (201)
159 2j1l_A RHO-related GTP-binding 99.2 3.2E-11 1.1E-15 122.1 8.9 114 7-155 33-151 (214)
160 2p67_A LAO/AO transport system 99.2 2.4E-11 8.2E-16 132.4 8.4 61 88-155 147-207 (341)
161 3b1v_A Ferrous iron uptake tra 99.2 2.4E-11 8.3E-16 127.9 7.8 110 8-155 3-120 (272)
162 3ihw_A Centg3; RAS, centaurin, 99.2 1.5E-10 5.2E-15 114.2 12.9 110 6-155 18-132 (184)
163 4dkx_A RAS-related protein RAB 99.2 2.3E-10 7.7E-15 116.3 14.2 116 7-155 12-131 (216)
164 2qpt_A EH domain-containing pr 99.2 5.2E-11 1.8E-15 137.6 9.8 66 90-155 154-231 (550)
165 2aka_B Dynamin-1; fusion prote 99.1 1.5E-10 5.2E-15 123.3 11.7 67 89-155 124-205 (299)
166 3lvq_E ARF-GAP with SH3 domain 99.1 1.1E-10 3.9E-15 133.7 11.3 111 7-155 321-436 (497)
167 3cbq_A GTP-binding protein REM 99.1 1.3E-10 4.4E-15 116.0 10.2 116 7-155 22-143 (195)
168 2iwr_A Centaurin gamma 1; ANK 99.1 2.9E-10 9.9E-15 110.9 12.4 109 6-155 5-121 (178)
169 3th5_A RAS-related C3 botulinu 98.7 9.6E-12 3.3E-16 124.7 0.0 115 6-155 28-147 (204)
170 2cxx_A Probable GTP-binding pr 99.1 2.7E-10 9.3E-15 112.1 9.6 108 9-155 2-135 (190)
171 2zej_A Dardarin, leucine-rich 99.0 8.6E-10 3E-14 108.6 9.9 120 8-155 2-125 (184)
172 2j69_A Bacterial dynamin-like 99.0 9.4E-10 3.2E-14 130.6 11.0 66 90-155 174-243 (695)
173 2wkq_A NPH1-1, RAS-related C3 99.0 6E-10 2E-14 120.2 8.3 114 7-155 154-272 (332)
174 2g3y_A GTP-binding protein GEM 99.0 2.1E-09 7E-14 108.8 11.2 117 7-155 36-158 (211)
175 3r7w_B Gtpase2, GTP-binding pr 99.0 1.7E-09 5.7E-14 115.7 10.7 110 10-155 1-119 (331)
176 1lnz_A SPO0B-associated GTP-bi 98.9 6.7E-10 2.3E-14 120.5 6.8 112 10-155 160-287 (342)
177 2f9l_A RAB11B, member RAS onco 98.9 1.6E-09 5.5E-14 108.0 8.7 116 7-155 4-123 (199)
178 2qag_A Septin-2, protein NEDD5 98.9 2.7E-09 9.2E-14 117.0 11.0 124 7-155 36-187 (361)
179 2cjw_A GTP-binding protein GEM 98.9 3.3E-09 1.1E-13 105.4 10.5 118 6-155 4-127 (192)
180 2qtf_A Protein HFLX, GTP-bindi 98.9 1E-08 3.6E-13 112.2 14.8 111 10-155 181-305 (364)
181 1pui_A ENGB, probable GTP-bind 98.9 4.8E-09 1.7E-13 105.2 11.0 113 7-155 25-150 (210)
182 2x2e_A Dynamin-1; nitration, h 98.9 2.5E-09 8.6E-14 117.0 9.2 67 89-155 129-210 (353)
183 3dpu_A RAB family protein; roc 98.9 2.7E-09 9.3E-14 123.3 9.7 123 6-155 39-163 (535)
184 2e87_A Hypothetical protein PH 98.9 9.1E-09 3.1E-13 112.7 12.3 114 7-155 166-293 (357)
185 3t34_A Dynamin-related protein 98.8 5E-09 1.7E-13 114.9 9.8 67 89-155 135-216 (360)
186 1oix_A RAS-related protein RAB 98.8 1.1E-08 3.8E-13 101.4 9.0 116 7-155 28-147 (191)
187 1wxq_A GTP-binding protein; st 98.8 7.4E-09 2.5E-13 114.7 7.7 38 89-126 70-114 (397)
188 3zvr_A Dynamin-1; hydrolase, D 98.7 4.5E-08 1.5E-12 115.6 10.7 67 89-155 149-230 (772)
189 3p32_A Probable GTPase RV1496/ 98.7 1.7E-08 5.8E-13 110.4 6.4 61 88-155 170-230 (355)
190 4a9a_A Ribosome-interacting GT 98.6 5.3E-08 1.8E-12 106.5 8.5 111 9-155 73-195 (376)
191 2j37_W Signal recognition part 98.6 3.1E-08 1E-12 112.5 6.3 134 7-155 100-253 (504)
192 2wsm_A Hydrogenase expression/ 98.6 2.9E-08 1E-12 100.4 4.5 132 8-155 30-167 (221)
193 3c5h_A Glucocorticoid receptor 98.5 7E-08 2.4E-12 100.5 5.7 43 113-155 162-211 (255)
194 1yrb_A ATP(GTP)binding protein 98.5 1.1E-07 3.7E-12 98.9 6.4 66 89-155 108-184 (262)
195 1udx_A The GTP-binding protein 98.4 5.6E-07 1.9E-11 99.9 10.2 112 10-155 159-282 (416)
196 2www_A Methylmalonic aciduria 98.4 6.7E-07 2.3E-11 97.4 10.1 61 88-155 165-225 (349)
197 2qag_C Septin-7; cell cycle, c 98.4 1.5E-06 5.1E-11 96.6 12.6 122 8-155 31-180 (418)
198 3sop_A Neuronal-specific septi 98.4 2.1E-06 7.2E-11 89.9 12.3 123 8-155 2-153 (270)
199 1jal_A YCHF protein; nucleotid 98.3 5.2E-07 1.8E-11 98.1 7.3 96 9-125 3-108 (363)
200 4fid_A G protein alpha subunit 98.3 2.2E-06 7.7E-11 92.2 10.7 68 88-155 159-241 (340)
201 3ohm_A Guanine nucleotide-bind 98.2 3.1E-06 1E-10 90.8 10.3 68 88-155 165-247 (327)
202 2dby_A GTP-binding protein; GD 98.2 9.2E-06 3.1E-10 88.7 14.1 96 9-125 2-111 (368)
203 2qag_B Septin-6, protein NEDD5 98.2 4.4E-06 1.5E-10 92.5 10.4 39 116-155 151-189 (427)
204 2qnr_A Septin-2, protein NEDD5 98.2 7.2E-06 2.5E-10 87.3 11.6 123 8-155 18-168 (301)
205 2ohf_A Protein OLA1, GTP-bindi 97.9 6.4E-06 2.2E-10 90.4 6.0 98 7-125 21-128 (396)
206 3ec1_A YQEH GTPase; atnos1, at 97.9 9.9E-07 3.4E-11 96.8 -0.7 115 9-155 163-287 (369)
207 2xxa_A Signal recognition part 97.9 1.5E-05 5.1E-10 89.0 8.2 65 88-155 182-253 (433)
208 3kl4_A SRP54, signal recogniti 97.9 9.9E-06 3.4E-10 90.1 6.6 66 88-155 178-251 (433)
209 2v3c_C SRP54, signal recogniti 97.9 1.6E-05 5.3E-10 88.8 7.9 65 88-155 179-251 (432)
210 1j8m_F SRP54, signal recogniti 97.9 2.2E-05 7.4E-10 83.3 8.0 65 88-155 179-252 (297)
211 3dm5_A SRP54, signal recogniti 97.8 2.5E-05 8.7E-10 86.8 8.6 65 88-155 181-252 (443)
212 2qm8_A GTPase/ATPase; G protei 97.8 3E-06 1E-10 91.8 0.9 61 88-155 146-206 (337)
213 1cip_A Protein (guanine nucleo 97.8 2.2E-05 7.5E-10 85.3 7.4 67 89-155 192-273 (353)
214 3h2y_A GTPase family protein; 97.8 3.3E-06 1.1E-10 92.6 0.4 115 9-155 161-286 (368)
215 1zcb_A G alpha I/13; GTP-bindi 97.7 4.2E-05 1.4E-09 83.4 6.7 68 88-155 199-281 (362)
216 2hf9_A Probable hydrogenase ni 97.6 0.0001 3.4E-09 74.4 8.4 60 88-155 117-177 (226)
217 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 0.00012 4.2E-09 80.3 9.2 98 8-125 20-127 (392)
218 4dzz_A Plasmid partitioning pr 97.6 0.00014 4.9E-09 72.0 8.7 64 89-155 75-143 (206)
219 3e1y_E Eukaryotic peptide chai 97.5 0.00011 3.8E-09 73.4 6.0 85 364-464 3-90 (204)
220 1f5n_A Interferon-induced guan 97.5 5.9E-05 2E-09 87.0 4.5 107 5-140 35-147 (592)
221 1azs_C GS-alpha; complex (lyas 97.5 0.00012 4E-09 80.7 6.5 67 89-155 216-297 (402)
222 3cwq_A Para family chromosome 97.3 0.00058 2E-08 68.3 9.2 66 88-155 66-133 (209)
223 1zu4_A FTSY; GTPase, signal re 97.1 0.00044 1.5E-08 74.0 5.9 63 88-155 190-267 (320)
224 1tq4_A IIGP1, interferon-induc 97.1 0.00086 2.9E-08 74.1 8.2 117 8-157 69-190 (413)
225 2xtz_A Guanine nucleotide-bind 97.1 0.00031 1.1E-08 76.2 4.5 68 88-155 181-263 (354)
226 2ffh_A Protein (FFH); SRP54, s 97.0 0.0005 1.7E-08 76.2 6.0 65 88-155 179-250 (425)
227 3szr_A Interferon-induced GTP- 97.0 0.0016 5.6E-08 75.9 10.0 66 90-155 147-227 (608)
228 1u0l_A Probable GTPase ENGC; p 96.9 0.00078 2.7E-08 71.5 5.9 63 91-155 64-128 (301)
229 2yhs_A FTSY, cell division pro 96.9 0.0011 3.9E-08 74.3 6.7 65 88-155 374-451 (503)
230 1puj_A YLQF, conserved hypothe 96.8 0.00075 2.6E-08 70.9 4.4 24 7-33 119-142 (282)
231 3e70_C DPA, signal recognition 96.7 0.0011 3.6E-08 71.3 5.0 65 89-155 211-281 (328)
232 3kjh_A CO dehydrogenase/acetyl 96.7 0.00084 2.9E-08 68.5 4.1 65 88-154 130-195 (254)
233 1rj9_A FTSY, signal recognitio 96.6 0.0019 6.5E-08 68.6 6.0 63 90-155 185-260 (304)
234 1vma_A Cell division protein F 96.5 0.0021 7.3E-08 68.2 5.6 65 88-155 185-262 (306)
235 1ls1_A Signal recognition part 96.4 0.0029 1E-07 66.8 5.5 65 88-155 179-250 (295)
236 2cve_A Hypothetical protein TT 96.4 0.01 3.4E-07 57.8 8.7 110 630-746 80-190 (191)
237 3cnl_A YLQF, putative uncharac 96.3 0.0014 4.9E-08 68.0 2.7 21 9-32 100-120 (262)
238 1puj_A YLQF, conserved hypothe 96.3 0.0053 1.8E-07 64.4 6.9 59 95-155 4-63 (282)
239 3end_A Light-independent proto 96.3 0.0044 1.5E-07 65.6 6.3 66 88-154 155-225 (307)
240 2px0_A Flagellar biosynthesis 96.2 0.0041 1.4E-07 65.7 5.8 64 88-155 181-252 (296)
241 3k9g_A PF-32 protein; ssgcid, 96.2 0.011 3.9E-07 60.9 8.9 66 88-155 143-210 (267)
242 1vi7_A Hypothetical protein YI 96.2 0.012 4.2E-07 58.3 8.3 112 630-747 92-203 (217)
243 3q5d_A Atlastin-1; G protein, 95.9 0.023 7.9E-07 63.2 9.8 26 6-34 65-90 (447)
244 3ec1_A YQEH GTPase; atnos1, at 95.2 0.02 6.9E-07 62.4 6.1 62 91-155 50-111 (369)
245 2ph1_A Nucleotide-binding prot 95.2 0.033 1.1E-06 57.4 7.4 67 88-154 127-194 (262)
246 3cnl_A YLQF, putative uncharac 95.0 0.0092 3.1E-07 61.8 2.8 54 98-155 5-59 (262)
247 3b9q_A Chloroplast SRP recepto 95.0 0.031 1.1E-06 59.1 6.9 63 90-155 184-259 (302)
248 2yv5_A YJEQ protein; hydrolase 94.6 0.028 9.5E-07 59.4 5.3 56 100-155 66-123 (302)
249 2og2_A Putative signal recogni 94.3 0.046 1.6E-06 59.1 6.1 63 90-155 241-316 (359)
250 1g3q_A MIND ATPase, cell divis 93.8 0.055 1.9E-06 54.4 5.2 66 88-155 110-176 (237)
251 3h2y_A GTPase family protein; 93.7 0.054 1.8E-06 58.9 5.3 58 95-155 52-109 (368)
252 1wcv_1 SOJ, segregation protei 93.5 0.14 4.7E-06 52.4 7.7 66 88-155 110-182 (257)
253 3la6_A Tyrosine-protein kinase 93.5 0.091 3.1E-06 55.0 6.5 66 89-155 201-267 (286)
254 3lh2_S 4E10_1VI7A_S0_002_N (T8 93.4 0.062 2.1E-06 44.2 3.9 63 681-746 8-70 (76)
255 1hyq_A MIND, cell division inh 93.4 0.059 2E-06 55.2 4.7 66 88-155 109-175 (263)
256 3l82_B F-box only protein 4; T 93.1 0.1 3.4E-06 51.8 5.5 65 91-155 97-176 (227)
257 3bfv_A CAPA1, CAPB2, membrane 92.8 0.12 4E-06 53.7 5.9 66 89-155 191-257 (271)
258 1xe1_A Hypothetical protein PF 92.7 0.34 1.1E-05 42.9 7.7 50 382-447 48-97 (116)
259 3cio_A ETK, tyrosine-protein k 92.5 0.2 6.9E-06 52.6 7.4 67 88-155 212-279 (299)
260 2oze_A ORF delta'; para, walke 92.2 0.17 5.7E-06 52.9 6.2 66 88-155 153-225 (298)
261 1t9h_A YLOQ, probable GTPase E 92.1 0.055 1.9E-06 57.2 2.4 20 10-32 175-194 (307)
262 1bif_A 6-phosphofructo-2-kinas 92.1 0.11 3.7E-06 58.4 4.9 26 7-35 38-63 (469)
263 1t9h_A YLOQ, probable GTPase E 92.0 0.21 7E-06 52.8 6.6 47 109-155 82-130 (307)
264 2yv5_A YJEQ protein; hydrolase 91.2 0.21 7.2E-06 52.6 5.8 20 10-32 167-186 (302)
265 3q9l_A Septum site-determining 91.0 0.16 5.6E-06 51.6 4.6 65 89-155 113-186 (260)
266 3ea0_A ATPase, para family; al 90.9 0.16 5.6E-06 51.1 4.4 65 89-155 118-185 (245)
267 2xj4_A MIPZ; replication, cell 90.5 0.11 3.7E-06 54.3 2.7 35 88-124 102-136 (286)
268 1byi_A Dethiobiotin synthase; 89.9 0.81 2.8E-05 45.2 8.5 68 88-155 107-180 (224)
269 1kgd_A CASK, peripheral plasma 89.6 0.17 5.9E-06 48.7 3.0 22 10-34 7-28 (180)
270 1ye8_A Protein THEP1, hypothet 89.5 0.18 6.2E-06 48.7 3.1 24 10-36 2-25 (178)
271 3zvl_A Bifunctional polynucleo 89.3 0.84 2.9E-05 50.2 8.7 22 9-33 259-280 (416)
272 3l2o_B F-box only protein 4; s 89.1 0.39 1.3E-05 49.9 5.4 57 99-155 196-261 (312)
273 1u0l_A Probable GTPase ENGC; p 89.0 0.26 9E-06 51.8 4.2 20 10-32 171-190 (301)
274 1knq_A Gluconate kinase; ALFA/ 88.9 0.23 7.9E-06 47.2 3.4 26 9-37 9-34 (175)
275 1lvg_A Guanylate kinase, GMP k 88.9 0.19 6.6E-06 49.2 2.9 22 10-34 6-27 (198)
276 4ido_A Atlastin-1; GTPase, GTP 88.6 1.2 4.2E-05 49.2 9.3 26 6-34 65-90 (457)
277 3c8u_A Fructokinase; YP_612366 88.3 0.24 8E-06 48.9 3.1 22 8-32 22-43 (208)
278 1c9k_A COBU, adenosylcobinamid 88.3 0.71 2.4E-05 44.6 6.3 49 133-185 117-165 (180)
279 3a00_A Guanylate kinase, GMP k 88.3 0.21 7.3E-06 48.2 2.7 21 11-34 4-24 (186)
280 3tr0_A Guanylate kinase, GMP k 88.1 0.24 8.1E-06 48.3 2.9 22 10-34 9-30 (205)
281 1znw_A Guanylate kinase, GMP k 88.0 0.24 8.3E-06 48.7 2.9 22 10-34 22-43 (207)
282 1uf9_A TT1252 protein; P-loop, 87.3 0.33 1.1E-05 47.2 3.4 30 2-34 2-31 (203)
283 1htw_A HI0065; nucleotide-bind 87.0 0.31 1.1E-05 46.0 2.9 22 10-34 35-56 (158)
284 1z6g_A Guanylate kinase; struc 87.0 0.29 1E-05 48.7 2.9 22 10-34 25-46 (218)
285 4gp7_A Metallophosphoesterase; 86.7 0.29 1E-05 46.6 2.6 19 10-31 11-29 (171)
286 3lw7_A Adenylate kinase relate 86.7 0.36 1.2E-05 45.3 3.2 24 10-37 3-26 (179)
287 1s96_A Guanylate kinase, GMP k 86.6 0.32 1.1E-05 48.6 2.9 23 10-35 18-40 (219)
288 3kb2_A SPBC2 prophage-derived 86.6 0.37 1.3E-05 45.3 3.3 24 10-36 3-26 (173)
289 3ney_A 55 kDa erythrocyte memb 86.6 0.34 1.2E-05 47.6 3.0 23 10-35 21-43 (197)
290 4eun_A Thermoresistant glucoki 86.6 0.37 1.3E-05 47.0 3.4 26 10-38 31-56 (200)
291 3tau_A Guanylate kinase, GMP k 86.5 0.31 1.1E-05 48.0 2.8 23 10-35 10-32 (208)
292 4g1u_C Hemin import ATP-bindin 86.4 0.42 1.4E-05 49.3 3.8 19 10-31 39-57 (266)
293 1zp6_A Hypothetical protein AT 86.4 0.31 1.1E-05 46.9 2.6 20 10-32 11-30 (191)
294 1kag_A SKI, shikimate kinase I 86.3 0.39 1.3E-05 45.3 3.2 24 10-36 6-29 (173)
295 1np6_A Molybdopterin-guanine d 86.1 0.39 1.3E-05 46.2 3.1 22 10-34 8-29 (174)
296 1mv5_A LMRA, multidrug resista 86.1 0.51 1.7E-05 47.9 4.1 24 10-39 30-53 (243)
297 1ex7_A Guanylate kinase; subst 86.1 0.38 1.3E-05 46.8 3.0 22 11-35 4-25 (186)
298 2bbw_A Adenylate kinase 4, AK4 86.0 0.39 1.3E-05 48.6 3.3 28 9-39 28-55 (246)
299 3asz_A Uridine kinase; cytidin 85.9 0.34 1.2E-05 47.6 2.6 23 9-34 7-29 (211)
300 2wbm_A MTHSBDS, ribosome matur 85.8 1.4 4.9E-05 44.4 7.1 66 680-747 184-249 (252)
301 2j41_A Guanylate kinase; GMP, 85.4 0.41 1.4E-05 46.6 3.0 21 10-33 8-28 (207)
302 2wwf_A Thymidilate kinase, put 85.2 0.41 1.4E-05 46.9 2.8 26 6-34 8-33 (212)
303 3tif_A Uncharacterized ABC tra 85.2 0.37 1.3E-05 48.7 2.6 19 10-31 33-51 (235)
304 1xjc_A MOBB protein homolog; s 85.1 0.46 1.6E-05 45.4 3.0 21 10-33 6-26 (169)
305 3t61_A Gluconokinase; PSI-biol 85.0 0.5 1.7E-05 46.1 3.3 25 10-37 20-44 (202)
306 2pcj_A ABC transporter, lipopr 84.7 0.38 1.3E-05 48.2 2.4 18 11-31 33-50 (224)
307 2bdt_A BH3686; alpha-beta prot 84.7 0.5 1.7E-05 45.4 3.2 21 10-33 4-24 (189)
308 2qor_A Guanylate kinase; phosp 84.3 0.51 1.7E-05 46.2 3.1 24 9-35 13-36 (204)
309 3vaa_A Shikimate kinase, SK; s 84.3 0.57 2E-05 45.6 3.5 24 10-36 27-50 (199)
310 1t95_A Hypothetical protein AF 84.3 1.7 5.8E-05 43.6 6.8 67 680-748 169-235 (240)
311 2jeo_A Uridine-cytidine kinase 84.3 0.49 1.7E-05 47.9 3.0 26 9-37 26-51 (245)
312 3fb4_A Adenylate kinase; psych 84.2 0.54 1.9E-05 46.2 3.2 25 10-37 2-26 (216)
313 2onk_A Molybdate/tungstate ABC 84.2 0.46 1.6E-05 48.2 2.7 19 10-31 26-44 (240)
314 3dl0_A Adenylate kinase; phosp 84.2 0.58 2E-05 46.1 3.5 25 10-37 2-26 (216)
315 3b85_A Phosphate starvation-in 84.1 0.48 1.6E-05 46.9 2.8 21 10-33 24-44 (208)
316 2jaq_A Deoxyguanosine kinase; 84.1 0.58 2E-05 45.3 3.4 24 10-36 2-25 (205)
317 3ec2_A DNA replication protein 84.0 0.6 2E-05 44.5 3.4 22 9-33 39-60 (180)
318 4f4c_A Multidrug resistance pr 83.9 0.88 3E-05 57.7 5.7 20 10-32 1107-1126(1321)
319 2pt7_A CAG-ALFA; ATPase, prote 83.7 5.2 0.00018 42.4 10.9 20 10-32 173-192 (330)
320 1ly1_A Polynucleotide kinase; 83.7 0.55 1.9E-05 44.4 2.9 22 9-33 3-24 (181)
321 1cke_A CK, MSSA, protein (cyti 83.7 0.61 2.1E-05 46.2 3.4 25 9-36 6-30 (227)
322 1tev_A UMP-CMP kinase; ploop, 83.6 0.67 2.3E-05 44.4 3.6 25 9-36 4-28 (196)
323 1jjv_A Dephospho-COA kinase; P 83.6 0.57 2E-05 45.7 3.1 21 9-32 3-23 (206)
324 3trf_A Shikimate kinase, SK; a 83.6 0.65 2.2E-05 44.3 3.4 25 9-36 6-30 (185)
325 2i3b_A HCR-ntpase, human cance 83.5 0.59 2E-05 45.5 3.1 20 11-33 4-23 (189)
326 2f1r_A Molybdopterin-guanine d 83.5 0.31 1.1E-05 46.7 1.1 21 10-33 4-24 (171)
327 2eyu_A Twitching motility prot 83.5 0.61 2.1E-05 47.9 3.4 21 10-33 27-47 (261)
328 3aez_A Pantothenate kinase; tr 83.4 0.53 1.8E-05 49.7 2.9 22 8-32 90-111 (312)
329 3cm0_A Adenylate kinase; ATP-b 83.4 0.78 2.7E-05 43.8 3.9 25 9-36 5-29 (186)
330 1b0u_A Histidine permease; ABC 83.3 0.49 1.7E-05 48.7 2.5 18 11-31 35-52 (262)
331 1g6h_A High-affinity branched- 83.3 0.49 1.7E-05 48.4 2.6 19 10-31 35-53 (257)
332 2cbz_A Multidrug resistance-as 83.3 0.54 1.8E-05 47.5 2.8 19 10-31 33-51 (237)
333 2pze_A Cystic fibrosis transme 83.2 0.54 1.9E-05 47.2 2.8 19 10-31 36-54 (229)
334 3tqc_A Pantothenate kinase; bi 83.1 0.55 1.9E-05 49.8 2.9 25 7-34 91-115 (321)
335 3gfo_A Cobalt import ATP-bindi 83.1 0.5 1.7E-05 48.9 2.5 23 11-39 37-59 (275)
336 2d2e_A SUFC protein; ABC-ATPas 83.0 0.54 1.9E-05 47.9 2.7 20 10-32 31-50 (250)
337 1sgw_A Putative ABC transporte 82.9 0.53 1.8E-05 46.8 2.5 18 11-31 38-55 (214)
338 1ji0_A ABC transporter; ATP bi 82.9 0.53 1.8E-05 47.7 2.6 19 10-31 34-52 (240)
339 3hr8_A Protein RECA; alpha and 82.9 1.1 3.8E-05 48.1 5.3 18 17-34 67-84 (356)
340 2if2_A Dephospho-COA kinase; a 82.9 0.55 1.9E-05 45.8 2.6 21 10-33 3-23 (204)
341 2v9p_A Replication protein E1; 82.8 0.61 2.1E-05 49.0 3.1 21 10-33 128-148 (305)
342 2ehv_A Hypothetical protein PH 82.8 0.55 1.9E-05 47.1 2.7 20 10-32 32-51 (251)
343 2ff7_A Alpha-hemolysin translo 82.8 0.57 2E-05 47.7 2.8 19 10-31 37-55 (247)
344 4fcw_A Chaperone protein CLPB; 82.6 2.3 7.8E-05 44.1 7.5 23 9-34 48-70 (311)
345 2rcn_A Probable GTPase ENGC; Y 82.5 2.9 9.9E-05 44.9 8.3 44 110-155 127-173 (358)
346 2rcn_A Probable GTPase ENGC; Y 82.5 0.61 2.1E-05 50.2 2.9 20 10-32 217-236 (358)
347 2rhm_A Putative kinase; P-loop 82.4 0.76 2.6E-05 44.0 3.4 25 9-36 6-30 (193)
348 3lnc_A Guanylate kinase, GMP k 82.3 0.43 1.5E-05 47.7 1.6 20 10-32 29-48 (231)
349 2ghi_A Transport protein; mult 82.3 0.61 2.1E-05 47.9 2.8 24 10-39 48-71 (260)
350 2olj_A Amino acid ABC transpor 82.3 0.57 1.9E-05 48.2 2.5 18 11-31 53-70 (263)
351 4a74_A DNA repair and recombin 82.1 0.62 2.1E-05 46.0 2.7 21 10-33 27-47 (231)
352 1odf_A YGR205W, hypothetical 3 82.0 0.75 2.5E-05 48.0 3.4 23 7-32 30-52 (290)
353 1qhx_A CPT, protein (chloramph 81.9 0.76 2.6E-05 43.5 3.2 24 10-36 5-28 (178)
354 1vpl_A ABC transporter, ATP-bi 81.8 0.6 2.1E-05 47.8 2.5 19 10-31 43-61 (256)
355 2zu0_C Probable ATP-dependent 81.8 0.63 2.2E-05 47.9 2.7 20 10-32 48-67 (267)
356 3tlx_A Adenylate kinase 2; str 81.7 0.84 2.9E-05 46.1 3.6 28 7-37 28-55 (243)
357 2qi9_C Vitamin B12 import ATP- 81.7 0.66 2.3E-05 47.3 2.8 25 10-40 28-52 (249)
358 1nks_A Adenylate kinase; therm 81.6 0.66 2.3E-05 44.4 2.6 23 10-35 3-25 (194)
359 2vhj_A Ntpase P4, P4; non- hyd 81.5 1.3 4.6E-05 46.7 5.1 18 17-34 129-146 (331)
360 3pg5_A Uncharacterized protein 81.5 1.2 4.2E-05 47.9 5.0 35 89-125 153-187 (361)
361 3kta_A Chromosome segregation 81.4 0.77 2.6E-05 43.8 3.0 20 17-36 32-51 (182)
362 2ixe_A Antigen peptide transpo 81.4 0.69 2.4E-05 47.8 2.8 24 10-39 47-70 (271)
363 2yz2_A Putative ABC transporte 81.3 0.65 2.2E-05 47.8 2.6 20 17-39 39-58 (266)
364 1via_A Shikimate kinase; struc 81.3 0.75 2.6E-05 43.6 2.9 24 10-36 6-29 (175)
365 2kjq_A DNAA-related protein; s 81.2 0.81 2.8E-05 42.5 3.0 21 10-33 38-58 (149)
366 1qf9_A UMP/CMP kinase, protein 81.2 0.97 3.3E-05 43.1 3.7 25 9-36 7-31 (194)
367 2plr_A DTMP kinase, probable t 81.1 0.93 3.2E-05 44.1 3.6 25 9-36 5-29 (213)
368 1kht_A Adenylate kinase; phosp 81.1 0.76 2.6E-05 43.9 2.8 24 9-35 4-27 (192)
369 3uie_A Adenylyl-sulfate kinase 81.0 0.69 2.4E-05 45.1 2.6 23 9-34 26-48 (200)
370 1d1n_A Initiation factor 2; be 81.0 2.9 0.0001 35.8 6.1 64 373-447 12-75 (99)
371 2ihy_A ABC transporter, ATP-bi 81.0 0.72 2.5E-05 47.9 2.8 19 10-31 49-67 (279)
372 2cdn_A Adenylate kinase; phosp 80.9 0.87 3E-05 44.2 3.3 27 7-36 19-45 (201)
373 2nq2_C Hypothetical ABC transp 80.9 0.67 2.3E-05 47.3 2.5 18 11-31 34-51 (253)
374 2qt1_A Nicotinamide riboside k 80.8 0.77 2.6E-05 44.9 2.8 23 8-33 21-43 (207)
375 3io5_A Recombination and repai 80.6 3.5 0.00012 43.4 7.9 18 17-34 34-51 (333)
376 2c95_A Adenylate kinase 1; tra 80.5 0.43 1.5E-05 46.0 0.8 26 8-36 9-34 (196)
377 4e22_A Cytidylate kinase; P-lo 80.5 0.97 3.3E-05 45.9 3.5 27 9-38 28-54 (252)
378 2afh_E Nitrogenase iron protei 80.4 2 6.8E-05 44.4 6.0 67 88-154 117-189 (289)
379 1rz3_A Hypothetical protein rb 80.0 0.73 2.5E-05 45.0 2.4 22 9-33 23-44 (201)
380 3ez9_A Para; DNA binding, wing 79.9 1.5 5E-05 47.9 5.0 65 88-154 246-322 (403)
381 1uj2_A Uridine-cytidine kinase 79.9 1.1 3.6E-05 45.6 3.6 27 7-36 21-47 (252)
382 3of5_A Dethiobiotin synthetase 79.9 3.8 0.00013 40.9 7.7 66 88-155 109-182 (228)
383 1vht_A Dephospho-COA kinase; s 79.8 0.94 3.2E-05 44.6 3.1 23 8-33 4-26 (218)
384 2pt5_A Shikimate kinase, SK; a 79.7 1.1 3.7E-05 42.0 3.3 24 10-36 2-25 (168)
385 2v54_A DTMP kinase, thymidylat 79.7 0.87 3E-05 44.1 2.8 22 9-33 5-26 (204)
386 1y63_A LMAJ004144AAA protein; 79.7 1.1 3.8E-05 43.0 3.5 24 8-34 10-33 (184)
387 3n70_A Transport activator; si 79.6 2.5 8.6E-05 38.7 5.8 23 8-33 24-46 (145)
388 1e4v_A Adenylate kinase; trans 79.5 0.96 3.3E-05 44.5 3.1 25 10-37 2-26 (214)
389 1ukz_A Uridylate kinase; trans 79.5 1.2 4.2E-05 43.2 3.8 27 8-37 15-41 (203)
390 3jvv_A Twitching mobility prot 79.5 0.99 3.4E-05 48.6 3.4 21 10-33 125-145 (356)
391 1aky_A Adenylate kinase; ATP:A 79.4 0.99 3.4E-05 44.6 3.1 26 8-36 4-29 (220)
392 1sq5_A Pantothenate kinase; P- 79.4 0.83 2.8E-05 48.0 2.7 23 9-34 81-103 (308)
393 2b8t_A Thymidine kinase; deoxy 79.4 1.9 6.4E-05 43.1 5.1 42 114-155 88-129 (223)
394 2pjz_A Hypothetical protein ST 79.3 0.88 3E-05 46.7 2.8 19 10-31 32-50 (263)
395 1f2t_A RAD50 ABC-ATPase; DNA d 79.0 1 3.5E-05 41.9 2.9 18 17-34 29-46 (149)
396 3iij_A Coilin-interacting nucl 78.8 1 3.5E-05 42.9 2.9 25 9-36 12-36 (180)
397 2ze6_A Isopentenyl transferase 78.8 1.1 3.6E-05 45.7 3.2 24 10-36 3-26 (253)
398 3r20_A Cytidylate kinase; stru 78.7 1.1 3.7E-05 45.2 3.1 27 8-37 9-35 (233)
399 1zuh_A Shikimate kinase; alpha 78.7 1.2 4.2E-05 41.7 3.4 24 10-36 9-32 (168)
400 2gza_A Type IV secretion syste 78.6 0.78 2.7E-05 49.5 2.2 20 10-32 177-196 (361)
401 3sr0_A Adenylate kinase; phosp 78.5 1.1 3.7E-05 44.2 3.0 27 10-39 2-28 (206)
402 1cp2_A CP2, nitrogenase iron p 78.4 2.1 7.3E-05 43.5 5.4 67 88-154 114-186 (269)
403 2bwj_A Adenylate kinase 5; pho 78.3 1.1 3.9E-05 43.0 3.1 25 9-36 13-37 (199)
404 1zd8_A GTP:AMP phosphotransfer 78.3 1.2 4.1E-05 44.2 3.4 25 9-36 8-32 (227)
405 2z0h_A DTMP kinase, thymidylat 78.3 1.2 4E-05 42.8 3.2 22 10-34 2-23 (197)
406 3ug7_A Arsenical pump-driving 78.3 4 0.00014 43.5 7.7 42 114-155 237-279 (349)
407 2bbs_A Cystic fibrosis transme 78.2 0.94 3.2E-05 47.3 2.6 19 10-31 66-84 (290)
408 2pbr_A DTMP kinase, thymidylat 78.2 1.1 3.6E-05 43.0 2.9 21 10-33 2-22 (195)
409 1lw7_A Transcriptional regulat 78.1 0.89 3E-05 49.0 2.4 23 9-34 171-193 (365)
410 1gtv_A TMK, thymidylate kinase 78.0 0.53 1.8E-05 46.1 0.6 22 10-34 2-23 (214)
411 3fvq_A Fe(3+) IONS import ATP- 78.0 0.93 3.2E-05 48.8 2.6 18 11-31 33-50 (359)
412 2ewv_A Twitching motility prot 77.9 1.1 3.9E-05 48.4 3.2 21 10-33 138-158 (372)
413 3tui_C Methionine import ATP-b 77.9 0.99 3.4E-05 48.7 2.7 15 17-31 60-74 (366)
414 1ak2_A Adenylate kinase isoenz 77.8 1.2 4E-05 44.6 3.2 27 7-36 15-41 (233)
415 2iyv_A Shikimate kinase, SK; t 77.8 1.2 4.2E-05 42.3 3.2 24 10-36 4-27 (184)
416 1z47_A CYSA, putative ABC-tran 77.8 1 3.5E-05 48.4 2.7 19 10-31 43-61 (355)
417 2kdo_A Ribosome maturation pro 77.6 0.94 3.2E-05 45.8 2.3 66 680-748 173-238 (252)
418 1e6c_A Shikimate kinase; phosp 77.6 1.3 4.4E-05 41.6 3.2 24 10-36 4-27 (173)
419 2x8a_A Nuclear valosin-contain 77.6 1.2 4.2E-05 45.9 3.3 23 11-36 47-69 (274)
420 2yyz_A Sugar ABC transporter, 77.5 1 3.5E-05 48.5 2.7 18 11-31 32-49 (359)
421 2yvu_A Probable adenylyl-sulfa 77.5 1.3 4.4E-05 42.4 3.2 24 8-34 13-36 (186)
422 2chg_A Replication factor C sm 77.5 8 0.00027 37.0 9.1 22 10-34 40-61 (226)
423 3nh6_A ATP-binding cassette SU 77.3 0.73 2.5E-05 48.5 1.4 20 10-32 82-101 (306)
424 2v1u_A Cell division control p 77.2 5.5 0.00019 42.3 8.5 24 8-34 44-67 (387)
425 2vli_A Antibiotic resistance p 77.1 1.2 4.2E-05 42.2 2.9 25 9-36 6-30 (183)
426 2it1_A 362AA long hypothetical 77.0 1.1 3.7E-05 48.4 2.7 18 11-31 32-49 (362)
427 2w0m_A SSO2452; RECA, SSPF, un 76.9 1.3 4.4E-05 43.7 3.1 21 10-33 25-45 (235)
428 1g29_1 MALK, maltose transport 76.8 1.1 3.8E-05 48.5 2.7 18 11-31 32-49 (372)
429 2vp4_A Deoxynucleoside kinase; 76.6 0.83 2.8E-05 45.7 1.6 21 9-32 21-41 (230)
430 1gvn_B Zeta; postsegregational 76.6 1.4 4.8E-05 45.8 3.4 25 8-35 33-57 (287)
431 1nn5_A Similar to deoxythymidy 76.6 1.1 3.6E-05 43.9 2.3 24 8-34 9-32 (215)
432 1v43_A Sugar-binding transport 76.5 1.1 3.9E-05 48.4 2.7 18 11-31 40-57 (372)
433 3cmu_A Protein RECA, recombina 76.5 5.4 0.00018 52.1 9.2 23 10-35 1429-1451(2050)
434 3rlf_A Maltose/maltodextrin im 76.5 1.1 3.9E-05 48.5 2.7 18 11-31 32-49 (381)
435 2xb4_A Adenylate kinase; ATP-b 76.4 1.4 4.8E-05 43.7 3.3 24 10-36 2-25 (223)
436 1hqc_A RUVB; extended AAA-ATPa 76.4 7.8 0.00027 40.2 9.3 24 9-35 39-62 (324)
437 3pfi_A Holliday junction ATP-d 76.3 6.9 0.00024 41.1 8.8 23 9-34 56-78 (338)
438 2grj_A Dephospho-COA kinase; T 76.2 1.8 6.2E-05 42.1 3.9 26 8-36 12-37 (192)
439 2pez_A Bifunctional 3'-phospho 76.1 1.3 4.5E-05 42.1 2.8 22 9-33 6-27 (179)
440 1nij_A Hypothetical protein YJ 76.1 1.1 3.6E-05 47.5 2.3 18 17-34 10-27 (318)
441 3syl_A Protein CBBX; photosynt 75.8 4.9 0.00017 41.5 7.4 23 9-34 68-90 (309)
442 2axn_A 6-phosphofructo-2-kinas 75.7 2.2 7.5E-05 48.3 5.0 25 8-35 35-59 (520)
443 1xp8_A RECA protein, recombina 75.7 8.2 0.00028 41.5 9.3 18 17-34 80-97 (366)
444 1p9r_A General secretion pathw 75.6 1.5 5E-05 48.3 3.4 22 10-34 169-190 (418)
445 1zak_A Adenylate kinase; ATP:A 75.2 1.5 5.1E-05 43.3 3.0 26 9-37 6-31 (222)
446 2p5t_B PEZT; postsegregational 75.1 1.3 4.4E-05 45.0 2.6 26 8-36 32-57 (253)
447 1jbk_A CLPB protein; beta barr 75.0 1.7 5.9E-05 40.9 3.3 23 9-34 44-66 (195)
448 1ixz_A ATP-dependent metallopr 74.9 1.6 5.4E-05 44.1 3.2 22 11-35 52-73 (254)
449 2cvh_A DNA repair and recombin 74.6 1.5 5.2E-05 42.8 2.9 20 11-33 23-42 (220)
450 1a7j_A Phosphoribulokinase; tr 74.4 0.88 3E-05 47.5 1.1 23 8-33 5-27 (290)
451 1sxj_A Activator 1 95 kDa subu 74.1 11 0.00037 42.5 10.2 25 9-36 78-102 (516)
452 3nwj_A ATSK2; P loop, shikimat 74.1 1.6 5.4E-05 44.5 2.9 24 10-36 50-73 (250)
453 2oap_1 GSPE-2, type II secreti 74.0 1.1 3.7E-05 50.8 1.8 20 10-32 262-281 (511)
454 3d31_A Sulfate/molybdate ABC t 73.9 0.99 3.4E-05 48.4 1.4 19 10-31 28-46 (348)
455 3be4_A Adenylate kinase; malar 73.8 1.8 6.2E-05 42.6 3.2 25 9-36 6-30 (217)
456 3gd7_A Fusion complex of cysti 73.7 1.4 4.8E-05 47.9 2.6 20 10-32 49-68 (390)
457 3a4m_A L-seryl-tRNA(SEC) kinas 73.0 2.2 7.6E-05 43.4 3.8 23 9-34 5-27 (260)
458 3ake_A Cytidylate kinase; CMP 72.8 2 7E-05 41.5 3.3 24 10-36 4-27 (208)
459 3qf7_A RAD50; ABC-ATPase, ATPa 72.7 1.7 5.8E-05 46.9 2.9 18 17-34 29-46 (365)
460 2f6r_A COA synthase, bifunctio 72.3 1.7 5.7E-05 45.0 2.6 22 8-32 75-96 (281)
461 2npi_A Protein CLP1; CLP1-PCF1 72.3 1.6 5.6E-05 48.6 2.7 21 10-33 140-160 (460)
462 3umf_A Adenylate kinase; rossm 72.2 2 6.8E-05 42.7 3.1 22 17-38 35-56 (217)
463 1cr0_A DNA primase/helicase; R 72.2 1.8 6.1E-05 44.9 2.9 20 11-33 38-57 (296)
464 1iy2_A ATP-dependent metallopr 72.1 2 6.9E-05 44.1 3.2 22 11-35 76-97 (278)
465 1n0w_A DNA repair protein RAD5 71.8 1.9 6.5E-05 42.8 2.9 21 10-33 26-46 (243)
466 1in4_A RUVB, holliday junction 71.6 1.8 6.3E-05 45.8 2.9 24 10-36 53-76 (334)
467 3zq6_A Putative arsenical pump 71.5 7 0.00024 41.1 7.4 41 115-155 223-264 (324)
468 1oxx_K GLCV, glucose, ABC tran 71.5 1 3.4E-05 48.5 0.7 18 11-31 34-51 (353)
469 2w58_A DNAI, primosome compone 71.2 2.3 8E-05 41.0 3.3 23 9-34 55-77 (202)
470 3co5_A Putative two-component 71.2 3.7 0.00013 37.5 4.5 20 9-31 28-47 (143)
471 3d3q_A TRNA delta(2)-isopenten 71.2 2.5 8.6E-05 45.0 3.7 25 9-36 8-32 (340)
472 1m7g_A Adenylylsulfate kinase; 70.9 2 7E-05 42.0 2.8 22 9-33 26-47 (211)
473 1q57_A DNA primase/helicase; d 70.4 5.1 0.00017 45.0 6.3 19 17-35 248-266 (503)
474 1lv7_A FTSH; alpha/beta domain 70.2 2.5 8.5E-05 42.7 3.3 23 10-35 47-69 (257)
475 2bjv_A PSP operon transcriptio 69.7 9.9 0.00034 38.3 7.8 24 9-35 30-53 (265)
476 2obl_A ESCN; ATPase, hydrolase 69.5 2.4 8E-05 45.4 3.1 23 10-35 73-95 (347)
477 2p65_A Hypothetical protein PF 69.5 2.1 7.1E-05 40.2 2.4 23 9-34 44-66 (187)
478 3qks_A DNA double-strand break 69.4 2.4 8.1E-05 41.5 2.9 20 17-36 29-48 (203)
479 3bos_A Putative DNA replicatio 69.4 2.6 9.1E-05 41.4 3.3 23 9-34 53-75 (242)
480 3euj_A Chromosome partition pr 69.2 2.2 7.6E-05 47.7 2.9 21 10-33 31-51 (483)
481 4eaq_A DTMP kinase, thymidylat 69.1 2.9 0.0001 41.7 3.6 25 8-35 26-50 (229)
482 1q3t_A Cytidylate kinase; nucl 69.1 2.8 9.7E-05 41.8 3.4 27 8-37 16-42 (236)
483 1nlf_A Regulatory protein REPA 68.5 2.3 8E-05 43.6 2.7 21 10-33 32-52 (279)
484 3crm_A TRNA delta(2)-isopenten 68.1 3.3 0.00011 43.8 3.8 24 10-36 7-30 (323)
485 1svm_A Large T antigen; AAA+ f 67.9 2.6 9.1E-05 45.6 3.1 22 10-34 171-192 (377)
486 3pvs_A Replication-associated 67.6 12 0.0004 41.5 8.3 24 10-36 52-75 (447)
487 3tqf_A HPR(Ser) kinase; transf 67.5 2.6 8.8E-05 40.4 2.5 17 17-33 22-38 (181)
488 1ltq_A Polynucleotide kinase; 67.4 2.7 9.1E-05 43.5 2.9 22 10-34 4-25 (301)
489 3b5x_A Lipid A export ATP-bind 67.4 2.5 8.4E-05 48.6 2.9 20 10-32 371-390 (582)
490 3ez2_A Plasmid partition prote 67.3 4.3 0.00015 44.1 4.7 35 88-124 243-277 (398)
491 1ojl_A Transcriptional regulat 67.1 10 0.00036 39.4 7.5 24 9-35 26-49 (304)
492 3qkt_A DNA double-strand break 66.7 2.7 9.3E-05 44.6 2.9 17 17-33 29-45 (339)
493 3gmt_A Adenylate kinase; ssgci 66.7 3.3 0.00011 41.5 3.3 28 7-37 7-34 (230)
494 2dpy_A FLII, flagellum-specifi 66.6 2.9 9.8E-05 46.3 3.1 23 10-35 159-181 (438)
495 2qmh_A HPR kinase/phosphorylas 66.5 2.9 9.8E-05 41.0 2.7 22 10-34 36-57 (205)
496 3b60_A Lipid A export ATP-bind 66.2 2.5 8.5E-05 48.6 2.6 19 10-31 371-389 (582)
497 2dr3_A UPF0273 protein PH0284; 65.8 3 0.0001 41.4 2.9 17 17-33 29-45 (247)
498 2woj_A ATPase GET3; tail-ancho 65.8 5.4 0.00018 42.7 5.0 41 113-153 234-275 (354)
499 2h92_A Cytidylate kinase; ross 65.4 3 0.0001 40.9 2.7 25 9-36 4-28 (219)
500 2ocp_A DGK, deoxyguanosine kin 65.4 3 0.0001 41.7 2.7 24 9-35 3-26 (241)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=1.4e-144 Score=1310.74 Aligned_cols=782 Identities=61% Similarity=1.011 Sum_probs=692.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
...||+| +||+|||||||+++|++.+|.+.+...|.++++|++++|++||+|+.++..++.|........++....+
T Consensus 18 ~~rnI~I---iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 18 NVRNMSV---IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp GEEEEEE---ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred cccEEEE---ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 4679999 9999999999999999999988775556678999999999999999999999998621111111111234
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++++.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|+++...++|+++|+||+|+...+++++++++
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~ 174 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDL 174 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~ 246 (794)
+..+++++++++..+..|.+...|++.+.|..++++|+|+.+||+|++++|++.|.++|+++...+.+++||++||++++
T Consensus 175 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~ 254 (842)
T 1n0u_A 175 YQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKT 254 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTT
T ss_pred HHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCC
Confidence 99999999999999877665555666788999999999999999999999999999999999999999999999998877
Q ss_pred CceeecC--CCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHH
Q 003804 247 RKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (794)
Q Consensus 247 ~~~~~~~--~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (794)
++|...+ .++...++.|++++++|+|+|++++++.|+++|++||+++|++++.++++.+.++|+++++++|+|++++|
T Consensus 255 ~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~L 334 (842)
T 1n0u_A 255 KKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADAL 334 (842)
T ss_dssp TEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHH
T ss_pred CeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHH
Confidence 6776543 22344578999999999999999999999999999999999999999988788999999999999999999
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
||+|++|+|||.+++.++...+|.|+.+++....++.|++++|++|+|||+..+++.|++++|+|||||+|++|+.|+++
T Consensus 335 Ld~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~ 414 (842)
T 1n0u_A 335 LEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQ 414 (842)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEE
T ss_pred HHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEec
Confidence 99999999999999888887777765443334456789999999999999999999997799999999999999999999
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCCcccccccccCCCceEEEE
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVA 484 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~a 484 (794)
++++++++.+++..+||++|++++|+++++|++|.|||||+|.||+++.+++||||+... +..+.++.++.+|+++++
T Consensus 415 ~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~--~~~l~~~~~~~~Pv~~~a 492 (842)
T 1n0u_A 415 GPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET--AHNMKVMKFSVSPVVQVA 492 (842)
T ss_dssp CTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTT--CCCBCCCCCCCSCCEEEE
T ss_pred cccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCC--ccccccCCCCCCceEEEE
Confidence 888776655444468999999999999999999999999999999998778889998776 778889998767999999
Q ss_pred EEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeeccccc
Q 003804 485 VQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS 564 (794)
Q Consensus 485 Iep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi~~~~ 564 (794)
|+|+++.|++||.+||++|++|||+|++.++||||++|+|||||||||+++||+++| +|+++++++|+|+|||||++++
T Consensus 493 vep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f-~~vev~~~~P~V~yrETi~~~~ 571 (842)
T 1n0u_A 493 VEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDH-AGVPLKISPPVVAYRETVESES 571 (842)
T ss_dssp EEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTT-SCSCEEEECCCCCCEEEESSCC
T ss_pred EEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHh-cCCceEecCcEEEEEEeecccc
Confidence 999999999999999999999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred ceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCC-----------------------------------------C
Q 003804 565 CRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-----------------------------------------D 603 (794)
Q Consensus 565 ~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~-----------------------------------------~ 603 (794)
+..++.+++++|+++++++||++.++...++.|.+... .
T Consensus 572 ~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~~f~~~~~ 651 (842)
T 1n0u_A 572 SQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTK 651 (842)
T ss_dssp SSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSEEEEECCC
T ss_pred ccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCcEEEecCC
Confidence 88888888999999999999999877666666643110 0
Q ss_pred CccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEE
Q 003804 604 DPKYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLV 683 (794)
Q Consensus 604 ~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~ 683 (794)
+..|+++++++|++||+||+++|||||+||+||+|+|+||++|.|+++++++||++|+++||++|+++|+|+||||||+|
T Consensus 652 g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~LLEPi~~v 731 (842)
T 1n0u_A 652 AVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLV 731 (842)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEEEEEEEEE
T ss_pred CccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeEEeeEEEE
Confidence 12388899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCC
Q 003804 684 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEP 763 (794)
Q Consensus 684 eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~ 763 (794)
+|+||++++|+|++||++|||+|+++++.+|+++++|+|++|++|||||+++|||+|+|+|+|+|+|+||++||++|+++
T Consensus 732 eI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp~~~~~~ 811 (842)
T 1n0u_A 732 EIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDP 811 (842)
T ss_dssp EEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSCTTCT
T ss_pred EEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCCCCccch
Confidence 99999999999999999999999999987766789999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003804 764 GSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 794 (794)
Q Consensus 764 ~~~~~~~~~~~r~rkGl~~~~~~~~~~~~~l 794 (794)
+|+|+++|+++|+||||++++|.+++|+|+|
T Consensus 812 ~~~a~~~~~~~R~rKGl~~~~p~~~~~~d~~ 842 (842)
T 1n0u_A 812 TSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842 (842)
T ss_dssp TSHHHHHHHHHHHHTTCCSSCCCGGGGCCCC
T ss_pred hhHHHHHHHHHHHhCCCCCCCCCHHHhccCC
Confidence 9999999999999999999999999999997
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.4e-120 Score=1081.65 Aligned_cols=658 Identities=26% Similarity=0.378 Sum_probs=526.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc--cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~--~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (794)
.+..|||| +||+|||||||+++||+.+|.+++. ..+..+++|++++||+|||||+++.+++.|.. .
T Consensus 11 ~~IRNi~I---iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~---------~ 78 (709)
T 4fn5_A 11 NRYRNIGI---CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKG---------S 78 (709)
T ss_dssp GGEEEEEE---ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECC---------T
T ss_pred HHCeEEEE---EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEecc---------C
Confidence 34679999 9999999999999999999988762 11225799999999999999999999999962 1
Q ss_pred ccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCH
Q 003804 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~ 163 (794)
..++++++|||||||||.||..|+.++|+++||||+||||++|+++||+.+|++|.++++|+|+|||||||. ++++
T Consensus 79 ~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~----~a~~ 154 (709)
T 4fn5_A 79 RGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ----GANF 154 (709)
T ss_dssp TSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST----TCCH
T ss_pred cCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc----CccH
Confidence 123457999999999999999999999999999999999999999999999999999999999999999999 8885
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccC--ccceeeehhhHHHHHhhhcCCChHhHHHHhhcccc
Q 003804 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (794)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~ 241 (794)
..+ +++++..+.. .+...++|++++ +.|+ +|+.++..++|++..
T Consensus 155 ~~~-------~~ei~~~l~~-----------~~~~~~~pi~~~~~~~g~----------------vd~~~~~~~~~~~~~ 200 (709)
T 4fn5_A 155 LRV-------VEQIKKRLGH-----------TPVPVQLAIGAEENFVGQ----------------VDLIKMKAIYWNDDD 200 (709)
T ss_dssp HHH-------HHHHHHHHCS-----------CEEESEEEESSSTTCCEE----------------EETTTTEEEEEEC--
T ss_pred HHH-------HHHhhhhccc-----------ceeeeecccCchhccceE----------------EEEeeeeEEEeeccc
Confidence 544 4444444321 122235566544 3343 344455556665421
Q ss_pred cCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc
Q 003804 242 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 320 (794)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 320 (794)
. ...+... +....+.+.....+..+++.+++.|++++++|+++ .+++.+++. ..+.+... .+++|+
T Consensus 201 ~---g~~~~~~-----~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~--~~~~~~~~~---~~l~~~~~~~~~~pv 267 (709)
T 4fn5_A 201 K---GMTYREE-----EIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEE--GELSEAEIK---EGLRLRTLACEIVPA 267 (709)
T ss_dssp C---CCEEEEC-----CCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH--SCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred C---Cceeccc-----cccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCccHHHHH---HHHHHhhhhceeeee
Confidence 1 1122222 23355666666778889999999999999999998 778888776 44555444 567775
Q ss_pred ----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEE
Q 003804 321 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 390 (794)
Q Consensus 321 ----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV 390 (794)
++.|||+|++++|+|.+++..+... .+++.....++||+++|++++|||+.++++.|+ ++|+||
T Consensus 268 ~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~-----~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV 341 (709)
T 4fn5_A 268 VCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVS-----PDDETVEDERHADDNEPFSSLAFKIATDPFVGT-LTFARV 341 (709)
T ss_dssp EECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBC-----CC-CCSCCEECSCTTSCCEEEEEECCCBTTTBC-CCEEEE
T ss_pred eeeecccCCchHHHHHHHHhhCCCCcccccccccC-----CccccccccccCCccCcceEEEEEeecccCCCc-eEEEec
Confidence 7899999999999998876554322 123334566789999999999999999999887 999999
Q ss_pred EeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccc
Q 003804 391 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHP 469 (794)
Q Consensus 391 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~ 469 (794)
|||+|++||.|+ |.+++++ +++++|+.++|+++++|+++.|||||+|.|++++ .+| ||++.+. +..
T Consensus 342 ~sGtl~~G~~v~----~~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~--~~gdTl~~~~~--~~~ 408 (709)
T 4fn5_A 342 YSGVLSSGDSVL----NSVKGKK-----ERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV--TTGDTLCSIEK--PII 408 (709)
T ss_dssp EESCEETTCBCB----CTTTCCC-----CBCCCEECCCSSCCCEESEECTTCEEEECSCSSC--CTTCEEECSSS--CCB
T ss_pred cCCCCCCCCEEE----EecCCcE-----EeecceeEeecceeeEeeeecCCCeeeecCCCcC--ccCCEecCCCc--ccc
Confidence 999999999999 4445554 6999999999999999999999999999999987 566 9998877 677
Q ss_pred ccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeE
Q 003804 470 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEII 548 (794)
Q Consensus 470 ~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~ 548 (794)
++++.++ +|+++++|+|.++.|++||.+||++|++|||+|+++.+ +|||++|+||||||||||++||+++| |++++
T Consensus 409 ~~~~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~--gvev~ 485 (709)
T 4fn5_A 409 LERMDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEAN 485 (709)
T ss_dssp CC----C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT--CCCBC
T ss_pred CCCCCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh--CceEE
Confidence 8888886 99999999999999999999999999999999999875 89999999999999999999999999 99999
Q ss_pred EcCcEEEEEeecccccce-----eEeecCCCceeEEEEEEeeCCc----------cchhhhccCCCCCCCCccchHHhHH
Q 003804 549 KSDPVVSFRETVLEKSCR-----TVMSKSPNKHNRLYMEARPLEE----------GLAEAIDDGRIGPRDDPKYLNEIKD 613 (794)
Q Consensus 549 ~~~p~V~yrETi~~~~~~-----~~~~~~~~~~~~v~~~~ePl~~----------~~~~~i~~g~i~~~~~~~~~~~i~~ 613 (794)
+++|+|+|||||++.+.. ..+..+.++++.+|++++|++. .|.+.+.+|.+|.+ |+ +
T Consensus 486 vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~----~~----~ 557 (709)
T 4fn5_A 486 IGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKE----YI----P 557 (709)
T ss_dssp CBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGG----GH----H
T ss_pred EeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHH----HH----H
Confidence 999999999999875431 2345566778899999999752 24556666666544 55 5
Q ss_pred HHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcch
Q 003804 614 SVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALG 693 (794)
Q Consensus 614 ~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g 693 (794)
+|++||+||+++||||||||+||+|+|.|+++|.+.++. ..|..|+++||++|+++|+|+||||||.|+|+||++++|
T Consensus 558 ~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~--~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G 635 (709)
T 4fn5_A 558 AIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNE--MAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMG 635 (709)
T ss_dssp HHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCH--HHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHH
T ss_pred HHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCCh--HHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHH
Confidence 899999999999999999999999999999999733333 235679999999999999999999999999999999999
Q ss_pred hHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCC
Q 003804 694 GIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 760 (794)
Q Consensus 694 ~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~ 760 (794)
+|+++|++|||+|.+++..++ ..+|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+|+
T Consensus 636 ~V~~~L~~RRG~i~~~~~~~~--~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~ 700 (709)
T 4fn5_A 636 DVMGDLNRRRGLIQGMEDTVS--GKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNI 700 (709)
T ss_dssp HHHHHHGGGTCEEEEEEECSS--EEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHH
T ss_pred HHHHHHHhcCCEEeceEecCC--CEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCH
Confidence 999999999999999988654 67899999999999999999999999999999999999999975
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=3.3e-113 Score=1018.40 Aligned_cols=663 Identities=27% Similarity=0.366 Sum_probs=559.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc---cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~---~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (794)
.+..+|+| +||+|||||||+++|++.+|.+... +.| .+++|+++.|++||+|+.++..++.|...
T Consensus 8 ~~~~~I~I---iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~-------- 75 (704)
T 2rdo_7 8 ARYRNIGI---SAHIDAGKTTTTERILFYTGVNHKIGEVHDG-AATMDWMEQEQERGITITSAATTAFWSGM-------- 75 (704)
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHHhcCCcccccccCCC-ceeecChhhHHhcCceeeeceEEEEECCc--------
Confidence 34679999 9999999999999999999877652 122 47899999999999999999999988510
Q ss_pred cccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCC
Q 003804 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (794)
Q Consensus 83 ~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~ 162 (794)
..+++.+.+||||||||.||..++.++++.+|+||+|||+++|++.||+.+|+++...++|+++|+||+|+. .++
T Consensus 76 -~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~----~~~ 150 (704)
T 2rdo_7 76 -AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM----GAN 150 (704)
T ss_pred -cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc----ccc
Confidence 012345999999999999999999999999999999999999999999999999999999999999999998 777
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccC--ccceeeehhhHHHHHhhhcCCChHhHHHHhhccc
Q 003804 163 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 240 (794)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~ 240 (794)
++++.+.+++ .+.. .+...++|++.+ +.|+ +|+..+..++|.+.
T Consensus 151 ~~~~~~~l~~-------~l~~-----------~~~~~~~Pi~~~~~f~g~----------------~dl~~~~~~~~~~~ 196 (704)
T 2rdo_7 151 FLKVVNQIKT-------RLGA-----------NPVPLQLAIGAEEHFTGV----------------VDLVKMKAINWNDA 196 (704)
T ss_pred HHHHHHHHHH-------HhCC-----------CceeEEccccccccccce----------------eehhhhhhhcccCc
Confidence 5555444443 3321 011123444332 2222 66777777777421
Q ss_pred ccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hcccc
Q 003804 241 FFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLP 319 (794)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P 319 (794)
..+..+...+ .+..+.+++.+++++|+|.+++.|+++|++||++ ++++.+++. +++++.++ ++|+|
T Consensus 197 ---~~g~~~~~~~-----~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~--~~l~~~~l~---~~l~~~~~~~~~~P 263 (704)
T 2rdo_7 197 ---DQGVTFEYED-----IPADMVELANEWHQNLIESAAEASEELMEKYLGG--EELTEAEIK---GALRQRVLNNEIIL 263 (704)
T ss_pred ---cCCcceEEec-----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeE
Confidence 0012233222 2356788899999999999999999999999996 889999987 56666665 57999
Q ss_pred c----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEE
Q 003804 320 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 389 (794)
Q Consensus 320 ~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~R 389 (794)
+ ++.|||+|++++|+|.+++.++. +. +..+. ....+.|++++|++|+|||++.+++.|+ ++|+|
T Consensus 264 v~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~-~~~~~-~~~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~R 337 (704)
T 2rdo_7 264 VTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING---IL-DDGKD-TPAERHASDDEPFSALAFKIATDPFVGN-LTFFR 337 (704)
T ss_pred EEEeecccCccHHHHHHHHHHHCCChhhcccccc---cC-Ccccc-cccccccCCCCceEEEEEEEEEcCCCce-EEEEE
Confidence 7 69999999999999988765443 11 10111 1245678899999999999999999998 99999
Q ss_pred EEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcc
Q 003804 390 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAH 468 (794)
Q Consensus 390 V~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~ 468 (794)
||||+|++||.|++. +++++ ++|++|+.++|+++++|++|.|||||+|.|++++ .+| ||++... +.
T Consensus 338 V~sG~l~~g~~v~~~----~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~--~~GdTl~~~~~--~~ 404 (704)
T 2rdo_7 338 VYSGVVNSGDTVLNS----VKAAR-----ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV--TTGDTLCDPDA--PI 404 (704)
T ss_pred EEeeeecCCCEEEeC----CCCcE-----EEeceEEEEeCCCceEcceeCCCCEEEEeCcccC--ccCCEEeCCCc--cc
Confidence 999999999999953 33433 7999999999999999999999999999999987 677 9998776 67
Q ss_pred cccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeee
Q 003804 469 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 547 (794)
Q Consensus 469 ~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v 547 (794)
.++++.++ .|+++++|+|.++.|++||.+||++|++|||+|++.++ +|||++|+|||||||||+++||+++| |+++
T Consensus 405 ~l~~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f--~v~v 481 (704)
T 2rdo_7 405 ILERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF--NVEA 481 (704)
T ss_pred ccCCCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceE
Confidence 88899986 89999999999999999999999999999999999997 89999999999999999999999999 9999
Q ss_pred EEcCcEEEEEeeccccc-ceeEe----ecCCCceeEEEEEEeeC---Cc----cchhhhccCCCCCCCCccchHHhHHHH
Q 003804 548 IKSDPVVSFRETVLEKS-CRTVM----SKSPNKHNRLYMEARPL---EE----GLAEAIDDGRIGPRDDPKYLNEIKDSV 615 (794)
Q Consensus 548 ~~~~p~V~yrETi~~~~-~~~~~----~~~~~~~~~v~~~~ePl---~~----~~~~~i~~g~i~~~~~~~~~~~i~~~i 615 (794)
.+++|+|+|||||++++ +.... +++.++|++++++++|+ +. .|.+.+.+|.+| .+++++|
T Consensus 482 ~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~g~~~p--------~~~~~~v 553 (704)
T 2rdo_7 482 NVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIP--------GEYIPAV 553 (704)
T ss_pred EEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEEEeccCCcCc--------HHHHHHH
Confidence 99999999999999877 54433 34578889999999999 54 355666667654 4566799
Q ss_pred HHHHHHHHHcCCcCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchh
Q 003804 616 VAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGG 694 (794)
Q Consensus 616 ~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~ 694 (794)
++||+||+++||||||||+||+|+|+|+++|. ||++. +|+.|+++||++|+++|+|+||||||+|+|+||++++|+
T Consensus 554 ~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~ 630 (704)
T 2rdo_7 554 DKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSEL---AFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGD 630 (704)
T ss_pred HHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHH---HHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhH
Confidence 99999999999999999999999999999996 55544 588999999999999999999999999999999999999
Q ss_pred HHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHHHH
Q 003804 695 IYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLD 773 (794)
Q Consensus 695 v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~~~ 773 (794)
|+++|++|||+|++++..+ +++.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ +++++++
T Consensus 631 v~~~l~~rrG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~i~~~ 701 (704)
T 2rdo_7 631 VIGDLSRRRGMLKGQESEV--TGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNV------AQAVIEA 701 (704)
T ss_pred HHHHHHhCCceEeCceecC--CeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccH------HHHHHHH
Confidence 9999999999999999876 479999999999999999999999999999999999999999987 8898876
No 4
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.7e-111 Score=999.36 Aligned_cols=655 Identities=26% Similarity=0.369 Sum_probs=532.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc---cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~---~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (794)
....+|+| +||+|||||||+++|++.+|.+.+. ..| .+++|+.+.|++||+|+.+....+.|.
T Consensus 8 ~~~~~I~I---vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~-~~~~D~~~~e~~~giTi~~~~~~~~~~---------- 73 (693)
T 2xex_A 8 EKTRNIGI---MAHIDAGKTTTTERILYYTGRIHKIGETHEG-ASQMDWMEQEQDRGITITSAATTAAWE---------- 73 (693)
T ss_dssp TTEEEEEE---ECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEET----------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHHhcCCccccccccCC-ceecccchhhhhcCceEeeeeEEEEEC----------
Confidence 34689999 9999999999999999988877541 112 468999999999999999999988885
Q ss_pred cccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCC
Q 003804 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (794)
Q Consensus 83 ~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~ 162 (794)
++.++|||||||.+|..++.++++.+|++|+|||+++|++.++..+|+++...++|+++|+||+|+. +++
T Consensus 74 ------~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~----~~~ 143 (693)
T 2xex_A 74 ------GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL----GAN 143 (693)
T ss_dssp ------TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCC
T ss_pred ------CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc----ccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999998 776
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeecc--CccceeeehhhHHHHHhhhcCCChHhHHHHhhccc
Q 003804 163 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 240 (794)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~ 240 (794)
..++.+.++ ..+.. .+....+|++. ++.|+ +|... +..|
T Consensus 144 ~~~~~~~l~-------~~l~~-----------~~~~~~ipisa~~~~~~l----------------~d~l~--~~~~--- 184 (693)
T 2xex_A 144 FEYSVSTLH-------DRLQA-----------NAAPIQLPIGAEDEFEAI----------------IDLVE--MKCF--- 184 (693)
T ss_dssp HHHHHHHHH-------HHHCC-----------CEEESEEEECCGGGCCEE----------------EETTT--TEEE---
T ss_pred hHHHHHHHH-------HHhCC-----------CceeEEeecccCCCccee----------------eeeec--ceeE---
Confidence 544444433 33321 01111344432 23333 12211 1222
Q ss_pred ccC-CCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccc
Q 003804 241 FFD-PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWL 318 (794)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~ 318 (794)
+|+ .....+... ..+..|.+....++.++++.+++.|+++|++||++ .+++.+++. +++++.+. .+++
T Consensus 185 ~~~~~~~~~~~~~-----~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~--~~~~~~~~~---~~l~~~~~~~~~~ 254 (693)
T 2xex_A 185 KYTNDLGTEIEEI-----EIPEDHLDRAEEARASLIEAVAETSDELMEKYLGD--EEISVSELK---EAIRQATTNVEFY 254 (693)
T ss_dssp ECCSSSSCSCEEE-----CCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--CCCCHHHHH---HHHHHHHHTTSCE
T ss_pred EeccCCCceeEEe-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCee
Confidence 333 211112222 12356777888899999999999999999999996 789988886 45666655 5788
Q ss_pred cc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEE
Q 003804 319 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFG 388 (794)
Q Consensus 319 P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~ 388 (794)
|+ ++.|||+|++|+|+|.+++.++. +. +.++. ....+.|++++|++|+|||++++++.|+ ++|+
T Consensus 255 Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~-~~~~~-~~~~~~~~~~~p~~a~VfK~~~d~~~g~-~~~~ 328 (693)
T 2xex_A 255 PVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG---HR-ASNPE-EEVIAKADDSAEFAALAFKVMTDPYVGK-LTFF 328 (693)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEE---EE-TTEEE-EEEEECSCTTSCCEEEEEEEEEETTTEE-EEEE
T ss_pred eEEEeecccCcCHHHHHHHHHHHCCCchhcccccc---cC-CCccc-cceeecCCCCCceEEEEEEeeecCCCce-EEEE
Confidence 86 68999999999999988655432 11 11111 2346678999999999999999999887 9999
Q ss_pred EEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCc
Q 003804 389 RVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA 467 (794)
Q Consensus 389 RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~ 467 (794)
|||||+|++||.|++ .++++ .++|++|+.++|+++++|++|.|||||++.|++++ .+| |||+... +
T Consensus 329 RV~sG~l~~g~~v~~----~~~~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdTl~~~~~--~ 395 (693)
T 2xex_A 329 RVYSGTMTSGSYVKN----STKGK-----RERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT--GTGDTLCGEKN--D 395 (693)
T ss_dssp EEEESEEETTEEEEE----TTTTE-----EEEECCEEEECSSCEEECSEEETTCEEEEESCSSC--CTTCEEEETTC--C
T ss_pred EEEeeeEecCCEEEe----cCCCc-----eEEeceEEEEeCCCceEccccCcCCEEEEeCcccC--ccCCEEecCCC--c
Confidence 999999999999995 33443 37999999999999999999999999999999997 667 9999876 6
Q ss_pred ccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCee
Q 003804 468 HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAE 546 (794)
Q Consensus 468 ~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~ 546 (794)
.+++++.++ +|+++++|+|.++.|++||.+||++|++|||+|++.++ +|||++|+|||||||||+++||+++| |++
T Consensus 396 ~~~~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~--~v~ 472 (693)
T 2xex_A 396 IILESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVE 472 (693)
T ss_dssp EECCCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHS--CCC
T ss_pred cccCCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--Cce
Confidence 788999987 89999999999999999999999999999999999986 89999999999999999999999999 999
Q ss_pred eEEcCcEEEEEeecccccceeEee----cCCCceeEEEEEEeeCCcc----chhhhccCCCCCCCCccchHHhHHHHHHH
Q 003804 547 IIKSDPVVSFRETVLEKSCRTVMS----KSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKYLNEIKDSVVAG 618 (794)
Q Consensus 547 v~~~~p~V~yrETi~~~~~~~~~~----~~~~~~~~v~~~~ePl~~~----~~~~i~~g~i~~~~~~~~~~~i~~~i~~g 618 (794)
+.+++|+|+|||||+++++....+ ++.++|++++++++|++.+ |.+.+.+|.+|. +++++|++|
T Consensus 473 v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~--------~~~~~v~~g 544 (693)
T 2xex_A 473 CNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR--------EYIPSVEAG 544 (693)
T ss_dssp EEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCG--------GGHHHHHHH
T ss_pred EEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCH--------HHHHHHHHH
Confidence 999999999999999887764433 4567889999999999864 666677777654 445689999
Q ss_pred HHHHHHcCCcCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHH
Q 003804 619 FQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYS 697 (794)
Q Consensus 619 ~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~ 697 (794)
|+||+++|||||+||+||+|+|+|+++|. ||++. +|+.|+++||++|+++|+|+||||||+|+|+||++++|+|++
T Consensus 545 ~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~ 621 (693)
T 2xex_A 545 LKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEM---AFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMG 621 (693)
T ss_dssp HHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHH---HHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHH
T ss_pred HHHHHhcCCccCCceeeEEEEEEeccccCCCCCHH---HHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHH
Confidence 99999999999999999999999999997 66654 478999999999999999999999999999999999999999
Q ss_pred HhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHHHHH
Q 003804 698 VLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDI 774 (794)
Q Consensus 698 ~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~ 774 (794)
+|++|||+|+++++.+ +++.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ +++++++.
T Consensus 622 ~l~~rrG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~i~~~~ 690 (693)
T 2xex_A 622 DVTSRRGRVDGMEPRG--NAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSI------AEDIIKKN 690 (693)
T ss_dssp HHHHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHH------HHHHHHHH
T ss_pred HHHhCCcEeecccccC--CeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhH------HHHHHHHh
Confidence 9999999999999876 479999999999999999999999999999999999999999986 88998773
No 5
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.6e-111 Score=1003.06 Aligned_cols=654 Identities=27% Similarity=0.396 Sum_probs=490.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc--cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~--~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (794)
.+..+|+| +||+|||||||+++|++.+|.+.+. ..+..+++|+++.|++||+|+.+...++.|.
T Consensus 10 ~~~~~I~I---vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~----------- 75 (691)
T 1dar_A 10 KRLRNIGI---AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK----------- 75 (691)
T ss_dssp GGEEEEEE---EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET-----------
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC-----------
Confidence 45789999 9999999999999999988877542 0112468999999999999999999998885
Q ss_pred ccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCH
Q 003804 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~ 163 (794)
++.++|||||||.+|..++.++++.+|++|+|||+++|++.||..+|+++...++|+++|+||+|+. ++++
T Consensus 76 -----~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~~ 146 (691)
T 1dar_A 76 -----DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT----GADL 146 (691)
T ss_dssp -----TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCH
T ss_pred -----CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc----cCCH
Confidence 7999999999999999999999999999999999999999999999999999999999999999998 7774
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccC
Q 003804 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (794)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~ 243 (794)
+++ +++++..+... ..|...++..++++.||...+. +..| +|+
T Consensus 147 ~~~-------~~~l~~~l~~~---------~~~~~~Pi~~~~~~~g~~d~~~------------------~~~~---~~~ 189 (691)
T 1dar_A 147 WLV-------IRTMQERLGAR---------PVVMQLPIGREDTFSGIIDVLR------------------MKAY---TYG 189 (691)
T ss_dssp HHH-------HHHHHHTTCCC---------EEECEEEESCGGGCCEEEETTT------------------TEEE---EEC
T ss_pred HHH-------HHHHHHHhCCC---------ccceeccccCCCcccchhhhhc------------------ceee---Eec
Confidence 444 44444443210 1111112223455667754332 1222 233
Q ss_pred -CCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc-
Q 003804 244 -PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA- 320 (794)
Q Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 320 (794)
.....+... .....|.+++.+++.+|++.+++.|+++|++||++ .+++.+++. +++++.+. .+++|+
T Consensus 190 ~~~g~~~~~~-----~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~--~~~~~~~~~---~~~~~~~~~~~~~Pv~ 259 (691)
T 1dar_A 190 NDLGTDIREI-----PIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEG--EEPTEEELV---AAIRKGTIDLKITPVF 259 (691)
T ss_dssp STTSCCEEEE-----CCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEEEE
T ss_pred cCCCceeEEe-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCcEeEEE
Confidence 111112222 22356888889999999999999999999999996 889998886 45555555 578886
Q ss_pred ---------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEE
Q 003804 321 ---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVF 391 (794)
Q Consensus 321 ---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~ 391 (794)
++.|||+|++++|+|.+++.++... + ++ ....+.|++++|++|+|||+..+++.|+ ++|+|||
T Consensus 260 ~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~----~-~~--~~~~~~~~~~~p~~~~Vfk~~~d~~~G~-~~~~RV~ 331 (691)
T 1dar_A 260 LGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTT----P-EG--EVVEIHPDPNGPLAALAFKIMADPYVGR-LTFIRVY 331 (691)
T ss_dssp ECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEEC----S-SS--CEEEECCCTTSCCEEEEEEEEEETTTEE-EEEEEEE
T ss_pred EeecccCcCHHHHHHHHHHhCCChhhcccccccC----C-Cc--cccccccCCCCCcEEEEEEEEEcCCCCc-EEEEEEe
Confidence 6899999999999998875544321 1 11 1245678999999999999999999887 9999999
Q ss_pred eeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCc-cc
Q 003804 392 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA-HP 469 (794)
Q Consensus 392 sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~-~~ 469 (794)
||+|++||.|++. ++++ .++|++|+.++|++++++++|.|||||++.|++++ .+| ||++... + ..
T Consensus 332 sG~l~~g~~v~~~----~~~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~~--~~~~ 398 (691)
T 1dar_A 332 SGTLTSGSYVYNT----TKGR-----KERVARLLRMHANHREEVEELKAGDLGAVVGLKET--ITGDTLVGEDA--PRVI 398 (691)
T ss_dssp ESEEESSCEEEET----TTTE-----EEECCEEEEECSSCEEEESEEETTCEEEEECCSSC--CTTCEEEETTC--CCCB
T ss_pred eeeEecCCEEEec----CCCc-----EEEEceEEEEeCCCceEcceecCCCEEEEeCcccC--ccCCEEecCCC--cccc
Confidence 9999999999953 3343 37999999999999999999999999999999997 577 9998776 5 78
Q ss_pred ccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeE
Q 003804 470 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEII 548 (794)
Q Consensus 470 ~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~ 548 (794)
++++.++ .|+++++|+|.++.|++||.+||++|++|||+|++.++ +|||++|+|||||||||+++||+++| |+++.
T Consensus 399 l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~--~v~v~ 475 (691)
T 1dar_A 399 LESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF--KVDAN 475 (691)
T ss_dssp CC---------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCE--EEBTT
T ss_pred cCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh--CceEE
Confidence 8899987 89999999999999999999999999999999999987 89999999999999999999999999 99999
Q ss_pred EcCcEEEEEeecccccceeEe----ecCCCceeEEEEEEeeCCcc----chhhhccCCCCCCCCccchHHhHHHHHHHHH
Q 003804 549 KSDPVVSFRETVLEKSCRTVM----SKSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQ 620 (794)
Q Consensus 549 ~~~p~V~yrETi~~~~~~~~~----~~~~~~~~~v~~~~ePl~~~----~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~ 620 (794)
+++|+|+|||||+++++.... +++.++|++++++++|++.+ |.+.+.+|.+|++ |+ ++|++||+
T Consensus 476 ~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~----~~----~~v~~g~~ 547 (691)
T 1dar_A 476 VGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKE----YI----PAVQKGIE 547 (691)
T ss_dssp TBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTT----TH----HHHHHHHH
T ss_pred EeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHH----HH----HHHHHHHH
Confidence 999999999999988776433 34567889999999999864 6677777887655 55 48999999
Q ss_pred HHHHcCCcCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHh
Q 003804 621 WASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVL 699 (794)
Q Consensus 621 ~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L 699 (794)
||+++|||||+||+||+|+|+|+++|. ||++. +|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|
T Consensus 548 ~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l 624 (691)
T 1dar_A 548 EAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEM---AFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDL 624 (691)
T ss_dssp HHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHH---HHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHH
T ss_pred HHHhcCCccCCceeeEEEEEEeeeccccCcchH---HHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHH
Confidence 999999999999999999999999997 66655 47899999999999999999999999999999999999999999
Q ss_pred hhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHHH
Q 003804 700 NQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVL 772 (794)
Q Consensus 700 ~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~~ 772 (794)
++|||+|+++++.+ +++.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ ++++++
T Consensus 625 ~~rrG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~i~~ 689 (691)
T 1dar_A 625 NARRGQILGMEPRG--NAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQV------QEKLIK 689 (691)
T ss_dssp HHTTCCEEEEEEET--TEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHH------HHHHHC
T ss_pred HHCCceeecceecC--CeEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhH------HHHHHh
Confidence 99999999999876 479999999999999999999999999999999999999999986 778764
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=7.4e-115 Score=1024.01 Aligned_cols=597 Identities=21% Similarity=0.280 Sum_probs=505.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCc----eeecCChhhHhhhCcccccceEEEEeecchhhhhcccc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (794)
..||+| +||+|||||||+++||+++|.+++ .|+ .+++|++++||+|||||+++.+++.|+
T Consensus 2 IRNi~I---iaHvD~GKTTL~e~LL~~~G~i~~--~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~----------- 65 (638)
T 3j25_A 2 IINIGV---LAHVDAGKTTLTESLLYNSGAITE--LGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE----------- 65 (638)
T ss_dssp CCCCEE---ECCSTTSSHHHHHHHHHHHTCCSS--CSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS-----------
T ss_pred eeEEEE---EcCCCCCHHHHHHHHHHHcCCCcc--ccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC-----------
Confidence 458999 999999999999999999999987 333 579999999999999999999999996
Q ss_pred ccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCH
Q 003804 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~ 163 (794)
+++|||||||||.||..|+.++++++|+||+||||++|+++||+.+|++|.++++|+|+|||||||+ ++++
T Consensus 66 -----~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~----~a~~ 136 (638)
T 3j25_A 66 -----NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN----GIDL 136 (638)
T ss_dssp -----SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS----SCCS
T ss_pred -----CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc----cCCH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 8886
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccC
Q 003804 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (794)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~ 243 (794)
..+.+.+++ .+.. ++.+..... +|.+..
T Consensus 137 ~~~~~~i~~-------~l~~----------------~~~~~~~~~---------------------------~~~~~~-- 164 (638)
T 3j25_A 137 STVYQDIKE-------KLSA----------------EIVIKQKVE---------------------------LYPNVC-- 164 (638)
T ss_dssp HHHHHHHHH-------TTCC----------------CCCCCCCCC---------------------------SCGGGC--
T ss_pred HHHHHHHHH-------HhCC----------------CccccceeE---------------------------eecccc--
Confidence 655544433 2211 011100000 010000
Q ss_pred CCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hccccc--
Q 003804 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 320 (794)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 320 (794)
...+. ..++.+.+++.|++++++|+++ ..++..++.. .+...+. ..++|+
T Consensus 165 --~~~~~--------------------~~~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~~---~~~~~~~~~~~~Pv~~ 217 (638)
T 3j25_A 165 --VTNFT--------------------ESEQWDTVIEGNDDLLEKYMSG--KSLEALELEQ---EESIRFQNCSLFPLYH 217 (638)
T ss_dssp --CCCCC--------------------CHHHHHHHHHHHCHHHHHHHHH--CCCCSHHHHH---HHHHHHHHTSCCCCCC
T ss_pred --ccccc--------------------hhhhhhhhhcccHHHHhhhccC--CccchHHHHH---HHhhhhcccccccccc
Confidence 00000 0134677888899999999998 6777777652 3333333 467886
Q ss_pred --------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEe
Q 003804 321 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 392 (794)
Q Consensus 321 --------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~s 392 (794)
+++|||+|++++|+|.+ ++++|++++|||+..+++.|+ ++|+||||
T Consensus 218 gSa~~~~Gv~~LLd~i~~~~p~p~~-------------------------~~~~~~~~~Vfk~~~d~~~G~-la~~RV~s 271 (638)
T 3j25_A 218 GSAKSNIGIDNLIEVITNKFYSSTH-------------------------RGPSELCGNVFKIEYTKKRQR-LAYIRLYS 271 (638)
T ss_dssp CCSTTCCSHHHHHHHHHHSCCCSGG-------------------------GSCCCCCBEEBCCCCCSTTCC-CCBCCBSS
T ss_pred cccccCCCchhHhhhhhccccCccc-------------------------chhhhhcceeeeeeeeccCce-EEEEEEEc
Confidence 79999999999999953 235789999999999999997 99999999
Q ss_pred eeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccccc
Q 003804 393 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 471 (794)
Q Consensus 393 G~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~~~~~~~ 471 (794)
|+|++||.|++.+ . ++ +++.+++.++|.++++++++.|||||++.|. .. ++| |+++... .+.+.
T Consensus 272 G~l~~g~~v~~~~----~-~~-----~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~-~~--~~~~tl~d~~~--~~~~~ 336 (638)
T 3j25_A 272 GVLHLRDSVRVSE----K-EK-----IKVTEMYTSINGELCKIDRAYSGEIVILQNE-FL--KLNSVLGDTKL--LPQRK 336 (638)
T ss_dssp BCCCSCCCSSSCC----C-CC-----SSBCCCCSSCCCCBSCCCTTBCCCCSCCCSS-SC--SSEECSSSSSS--GGGCS
T ss_pred CcccCCCcccccc----C-cc-----eeEEeeecccccccccccccccceEEEEecc-cc--ccCceecCCCC--ccccc
Confidence 9999999998532 2 22 5899999999999999999999999999883 33 556 7877665 55667
Q ss_pred ccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEc
Q 003804 472 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 550 (794)
Q Consensus 472 ~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~ 550 (794)
++.+| +|+++++|+|.++.|++||.+||++|++|||+++++.+ +|||++|+|||||||||+++||+++| |+++.++
T Consensus 337 ~i~~p-~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef--gvev~~~ 413 (638)
T 3j25_A 337 KIENP-HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY--HVEIELK 413 (638)
T ss_dssp CCCCC-CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT--CCCCEEE
T ss_pred CccCC-CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh--CCcEEEe
Confidence 77765 99999999999999999999999999999999999987 89999999999999999999999999 9999999
Q ss_pred CcEEEEEeecccccceeE--eecCCCceeEEEEEEeeCCcc----chhhhccCCCCCCCCccchHHhHHHHHHHHHHHHH
Q 003804 551 DPVVSFRETVLEKSCRTV--MSKSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASK 624 (794)
Q Consensus 551 ~p~V~yrETi~~~~~~~~--~~~~~~~~~~v~~~~ePl~~~----~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~ 624 (794)
+|+|+|||||+++++... +.+..+++++|+++++|++.+ |.+.+.+|.+| .++.++|++||+||++
T Consensus 414 ~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~~~g~~f~~~~~~~~~~--------~~~~~av~~g~~~~~~ 485 (638)
T 3j25_A 414 EPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLN--------QSFQNAVMEGIRYGCE 485 (638)
T ss_dssp CCCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCSSCCCCCCCCCCSSSTT--------HHHHHHHHHHHHHHHH
T ss_pred CCceeEEEEecccceEEEEEecCCCCceEEEEEEEecccCCCCcEEEeeeecccch--------hhhhhHHhhhHHHHHh
Confidence 999999999999887543 334556678999999999864 45556666654 4455689999999999
Q ss_pred cCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhccc
Q 003804 625 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG 704 (794)
Q Consensus 625 ~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg 704 (794)
+| |+|+||+|++|+|+|+++|. .++...+|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||
T Consensus 486 ~G-l~g~pv~~v~v~l~dg~~h~--~~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG 562 (638)
T 3j25_A 486 QG-LYGWNVTDCKICFKYGLYYS--PVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCA 562 (638)
T ss_dssp SS-SSCCCCCSCCCCCCCCCCSS--CSCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTC
T ss_pred cc-ccCCcccceEEEEEECcccC--CCCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCc
Confidence 99 99999999999999999995 2344456889999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCCh
Q 003804 705 HVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGS 765 (794)
Q Consensus 705 ~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~ 765 (794)
+|++++..+ +.++|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+||++.+.
T Consensus 563 ~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp~~~~~ 621 (638)
T 3j25_A 563 NIVDTQLKN--NEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPR 621 (638)
T ss_dssp CCCCCCCCT--TEEEEECCCSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCCSCCCC
T ss_pred EEeCeEecC--CeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEEECceEECCCCcccccc
Confidence 999988765 57899999999999999999999999999999999999999999998643
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=8.8e-104 Score=933.88 Aligned_cols=634 Identities=23% Similarity=0.322 Sum_probs=538.6
Q ss_pred CCccc-eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCc----eeecCChhhHhhhCcccccceEEEEeecch
Q 003804 1 MSSYC-FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTD 75 (794)
Q Consensus 1 ~~~~~-~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~ 75 (794)
|.+.. .+..+|+| +||+|||||||+++|++..+.+.. .|+ .+.+|+.+.|++||+|+.+....+.|.
T Consensus 1 ~~s~~~~~~~~i~I---iG~~gaGKTTLl~~L~~~~~~~~~--~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--- 72 (665)
T 2dy1_A 1 MGTEGGAMIRTVAL---VGHAGSGKTTLTEALLYKTGAKER--RGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--- 72 (665)
T ss_dssp -----CCCEEEEEE---EESTTSSHHHHHHHHHHHTTSSSS--CCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET---
T ss_pred CCCCccCCCcEEEE---ECCCCChHHHHHHHHHHhcCCCCc--cceecCCcccccCCHHHHhcCCeEEecceEEeeC---
Confidence 45554 34578999 999999999999999988876544 232 468899999999999999998888885
Q ss_pred hhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 76 AALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 76 ~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.+||||||||.+|..++.++++.+|++++|+|+.+|+..||+.+|+++...++|+++|+||+|+.
T Consensus 73 -------------~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 -------------GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp -------------TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred -------------CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 7899999999999999999999999999999999999999999999999999999999999999985
Q ss_pred hhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeec--cCccceeeehhhHHHHHhhhcCCChHhHH
Q 003804 156 FLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMM 233 (794)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~id~~~l~ 233 (794)
...++..+.+++.+. + ..| .++|++ +++.||. |...
T Consensus 140 -----~~~~~~~~~l~~~l~--~---------------~~~--~~~Pi~~~~~~~g~~----------------d~~~-- 177 (665)
T 2dy1_A 140 -----GDYYALLEDLRSTLG--P---------------ILP--IDLPLYEGGKWVGLI----------------DVFH-- 177 (665)
T ss_dssp -----CCHHHHHHHHHHHHC--S---------------EEE--CEEEEEETTEEEEEE----------------ETTT--
T ss_pred -----hhHHHHHHHHHHHhC--C---------------cce--EEeeecCCCcccchh----------------hhhh--
Confidence 233343333333221 0 011 133333 3333442 2222
Q ss_pred HHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHH
Q 003804 234 ERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRV 313 (794)
Q Consensus 234 ~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i 313 (794)
.+.| ||++. .+...+ .+..|.+++.+++++|++.+++.|++++++|+++ .+++.+++. .++++.+
T Consensus 178 ~~~~---~~~~g--~~~~~~-----~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~--~~l~~~~~~---~~~~~~~ 242 (665)
T 2dy1_A 178 GKAY---RYENG--EEREAE-----VPPEERERVQRFRQEVLEAIVETDEGLLEKYLEG--EEVTGEALE---KAFHEAV 242 (665)
T ss_dssp TEEE---EEETT--EEEEEC-----CCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHH
T ss_pred hhee---ecCCC--ceeEec-----CCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHH
Confidence 2334 34432 243322 2457888899999999999999999999999996 889999887 4566665
Q ss_pred H-hccccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003804 314 M-QTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (794)
Q Consensus 314 ~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g 382 (794)
+ .+|+|+ ++.|||+|++++|+|.+. ++++|++++|||+..+++.|
T Consensus 243 ~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------------~~~~p~~~~V~k~~~d~~~G 298 (665)
T 2dy1_A 243 RRGLLYPVALASGEREIGVLPLLELILEALPSPTER------------------------FGDGPPLAKVFKVQVDPFMG 298 (665)
T ss_dssp HTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH------------------------HCSCSCEEEEEEEEEETTTE
T ss_pred HhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc------------------------CCCCCeEEEEEEEEEcCCCC
Confidence 5 468885 689999999999999642 14579999999999999988
Q ss_pred cceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeec
Q 003804 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTN 461 (794)
Q Consensus 383 ~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~ 461 (794)
+ ++|+|||||+|++||.|++.+ + .++|++|+.++|++.+++++|.|||||++.|++++ .+| ||++
T Consensus 299 ~-~~~~rV~sG~l~~g~~v~~~~------~-----~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~--~~Gdtl~~ 364 (665)
T 2dy1_A 299 Q-VAYLRLYRGRLKPGDSLQSEA------G-----QVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL--HRGMVLWQ 364 (665)
T ss_dssp E-EEEEEEEESEECTTEEEBCTT------S-----CEEESSEEEEETTEEEEESCEETTCEEEESSCTTC--CTTCEEES
T ss_pred e-EEEEEEcccEEecCCEEEcCC------C-----eEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccC--ccCCEEec
Confidence 7 999999999999999999431 2 27999999999999999999999999999999987 577 9998
Q ss_pred CCCCCc--ccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHH
Q 003804 462 EKEVDA--HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQ 538 (794)
Q Consensus 462 ~~~~~~--~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~ 538 (794)
... + .+++++.++ .|+++++|+|.++.|.+||.++|++|++|||+|++.++ +|||++|+|||||||||+++||+
T Consensus 365 ~~~--~~~~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~ 441 (665)
T 2dy1_A 365 GEK--PESEEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ 441 (665)
T ss_dssp SSC--CCGGGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCC--ccccccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH
Confidence 766 5 678889987 89999999999999999999999999999999999997 89999999999999999999999
Q ss_pred hhccCCeeeEEcCcEEEEEeecccccceeEe----ecCCCceeEEEEEEeeCC-ccchhhhccCCCCCCCCccchHHhHH
Q 003804 539 DDFMGGAEIIKSDPVVSFRETVLEKSCRTVM----SKSPNKHNRLYMEARPLE-EGLAEAIDDGRIGPRDDPKYLNEIKD 613 (794)
Q Consensus 539 ~~f~~~v~v~~~~p~V~yrETi~~~~~~~~~----~~~~~~~~~v~~~~ePl~-~~~~~~i~~g~i~~~~~~~~~~~i~~ 613 (794)
+| |+++.+++|+|+|||||+++++.... +++.+++++++++++|++ ..|.+.+.+|.+|++ |+ +
T Consensus 442 -~~--~v~v~~~~p~V~yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~g~~f~~~~~~g~~~~~----~~----~ 510 (665)
T 2dy1_A 442 -DY--GVEVEFSVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSK----YQ----E 510 (665)
T ss_dssp -HT--TCCEEEECCCCCCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECSSCEEEECCCTTSSCGG----GH----H
T ss_pred -HC--CceEEEeCCEEEEEEeeccceeeeeecccccCCCcceEEEEEEEEECCCCEEeeeccCCcchHH----HH----H
Confidence 99 99999999999999999988765433 344567789999999996 678888888988765 65 4
Q ss_pred HHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecc-cccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcc
Q 003804 614 SVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQAL 692 (794)
Q Consensus 614 ~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~ 692 (794)
+|++||+||+++|||||+||+||+|+|+|+++|. ||++. +|+.|+++||++|+++|+|+||||||+|+|+||++++
T Consensus 511 ~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~ 587 (665)
T 2dy1_A 511 AIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDL---AFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERV 587 (665)
T ss_dssp HHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHH---HHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGH
T ss_pred HHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCCCCCHH---HHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHH
Confidence 8999999999999999999999999999999997 76655 4779999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccccccCCCCCCCChhHHHHHH
Q 003804 693 GGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVL 772 (794)
Q Consensus 693 g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y~~~~~~~~~~~~~~~~~~~ 772 (794)
|+|+++|++|||+|.++++.+ +++.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ ++++++
T Consensus 588 g~v~~~l~~rrG~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~~~~ 659 (665)
T 2dy1_A 588 GDVLSDLQARRGRILGMEQEG--ALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHL------AQRIVQ 659 (665)
T ss_dssp HHHHHHHHHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHH------HHHHHH
T ss_pred HHHHHHHHHCCCEEeCcEecC--CeEEEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccH------HHHHHH
Confidence 999999999999999999875 589999999999999999999999999999999999999999986 899998
Q ss_pred HHH
Q 003804 773 DIR 775 (794)
Q Consensus 773 ~~r 775 (794)
+.+
T Consensus 660 ~~~ 662 (665)
T 2dy1_A 660 ERA 662 (665)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=9.7e-78 Score=694.33 Aligned_cols=463 Identities=21% Similarity=0.271 Sum_probs=327.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc---cCC---ceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE---VAG---DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~---~~G---~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
+..||+| +||+|||||||+++||+++|.|.+. ..| ..+++|++++||+|||||.++.+++.|+
T Consensus 30 r~RNiaI---iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~-------- 98 (548)
T 3vqt_A 30 RRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR-------- 98 (548)
T ss_dssp TEEEEEE---ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--------
T ss_pred ccceEEE---EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--------
Confidence 5689999 9999999999999999999998762 111 2479999999999999999999999996
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccC
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 160 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~ 160 (794)
+++|||||||||.||..|+.++|+++|+||+||||++|+++||+.+|++|.++++|+|+|||||||. +
T Consensus 99 --------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~----~ 166 (548)
T 3vqt_A 99 --------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE----A 166 (548)
T ss_dssp --------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC----C
T ss_pred --------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch----h
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeec--cCccceeeehhhHHHHHhhhcCCChHhHHHHhhc
Q 003804 161 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLWG 238 (794)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg 238 (794)
+++.++.+.+++.+.. ...|. ++|++ +.+.|+...+ ....++|.
T Consensus 167 ad~~~~~~~i~~~l~~----------------~~~p~--~~Pig~~~~f~g~vdl~----------------~~~~~~~~ 212 (548)
T 3vqt_A 167 LHPLDVMADIEQHLQI----------------ECAPM--TWPIGMGSSFKGTYDLL----------------HKQLHLFS 212 (548)
T ss_dssp CCHHHHHHHHHHHHTS----------------EEEES--EEEESCGGGCCEEEETT----------------TTEEEECC
T ss_pred cchhHhhhhhhhhcCC----------------ceEeE--EeeeecCCcccceEeee----------------eeeeeecc
Confidence 9977766655554431 12233 44444 4455554433 32233332
Q ss_pred ccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccc
Q 003804 239 ENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWL 318 (794)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~ 318 (794)
... .+.............+.+.+. .+...+...+.++.+ .+.+.+...+ +.+ -.+++
T Consensus 213 ~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~-~~~~~~~~~e-------~~~---~g~~~ 269 (548)
T 3vqt_A 213 ATH----GGRIQSGIVIHGADDPQLDEY--------LGDQAEQLRMDLALL-EEAGTPFDEE-------RYL---KGELT 269 (548)
T ss_dssp -----------CCCEECCSTTCTHHHHH--------HGGGHHHHHHHHHHH-HHHCCCCCHH-------HHH---TTSEE
T ss_pred ccc----CCcccccccccccchHHHHHH--------HHHHHHHhhhHHHHH-hhccCchhHH-------HHH---hCCcc
Confidence 110 000000000000000111110 000000001111111 1111222211 111 14677
Q ss_pred cc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeec---CCCCcce
Q 003804 319 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPA---SDKGRFF 385 (794)
Q Consensus 319 P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~---~~~g~~l 385 (794)
|+ +++|||+|++|+|+|.+..... . ...+.+.|++|+|||+..+ ++.|+ +
T Consensus 270 PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~---------------~-~~~~~~~p~~a~vfKi~~~~~~~~~Gr-l 332 (548)
T 3vqt_A 270 PVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT---------------R-VVEPGEEAFTGVVFKIQANMDKAHRDR-M 332 (548)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS---------------S-EECTTCSSCEEEEEEEECC-------C-E
T ss_pred eeeecccccCcCHHHHHHHHHHhCCCCCCccccc---------------c-ccCCCCcCceEEEEEEEccCCcCCCCe-E
Confidence 75 7999999999999996532110 0 0123467999999999876 67787 9
Q ss_pred EEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCC
Q 003804 386 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE 464 (794)
Q Consensus 386 ~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~ 464 (794)
+|+|||||+|++|+.|++ .+++++ +|+++++.++|.++++|++|.|||||+|.|++++ .+| |||+.+.
T Consensus 333 a~~RV~sG~l~~g~~v~~----~~~~~~-----~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GDTl~~~~~ 401 (548)
T 3vqt_A 333 AFLRICSGTFTRGMRLKH----HRTGKD-----VTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI--KIGDTFTESKE 401 (548)
T ss_dssp EEEEEEESCEETTCEEEE----TTTTEE-----EECTTCEECCCSSCCSSCEECTTCEEEEECSSCC--CTTCEEESSSS
T ss_pred EEEEEecceecCCCEEEe----eccccc-----cccchhhhhccccccccCEEecCCEEEecCCccC--ccCCEecCCCC
Confidence 999999999999999995 344443 7999999999999999999999999999999998 677 9999876
Q ss_pred CCcccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEecchhHHHHHHHHHHhhccCC
Q 003804 465 VDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGG 544 (794)
Q Consensus 465 ~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~ 544 (794)
+..+++++++ +|+++++|+|+++.|.++|.++|++|+++||+..++.++|||++|+|||||||||+++||+++| |
T Consensus 402 --~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey--~ 476 (548)
T 3vqt_A 402 --VLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEY--G 476 (548)
T ss_dssp --CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHH--C
T ss_pred --ccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHh--C
Confidence 6778888886 9999999999999999999999999999999665554599999999999999999999999999 9
Q ss_pred eeeE-----EcCcEEEEEeecccccceeEe----ecCCCceeEEEEE
Q 003804 545 AEII-----KSDPVVSFRETVLEKSCRTVM----SKSPNKHNRLYME 582 (794)
Q Consensus 545 v~v~-----~~~p~V~yrETi~~~~~~~~~----~~~~~~~~~v~~~ 582 (794)
+++. ++.|+|+|||||+..++.... ....++++.+++.
T Consensus 477 vev~~e~v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~ 523 (548)
T 3vqt_A 477 VDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLA 523 (548)
T ss_dssp CCEEEEECSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEE
T ss_pred CCEEEeeccccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEe
Confidence 9965 578999999999987765432 2334556677763
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.2e-74 Score=669.61 Aligned_cols=489 Identities=25% Similarity=0.398 Sum_probs=378.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+..||+| +||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+.+..+.+.|.. .
T Consensus 4 ~~irnI~I---iGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGITI~~~~~~~~~~~-----------~ 68 (600)
T 2ywe_A 4 KNVRNFCI---IAHVDHGKSTLADRLLEYTGAISEREKR-EQLLDTLDVERERGITVKMQAVRMFYKA-----------K 68 (600)
T ss_dssp GGEEEEEE---ECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEEC-----------T
T ss_pred cCceEEEE---ECCCCCCHHHHHHHHHhccCCccccccc-ccccccchhhhcccceeeeeEEEEEEEc-----------C
Confidence 34679999 9999999999999999999988764233 5789999999999999999999998862 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~ 165 (794)
+++.+.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|.++...++|+++|+||+|+. ++++++
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~----~a~~~~ 144 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLP----SADVDR 144 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHH
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcc----ccCHHH
Confidence 2346899999999999999999999999999999999999999999999999999999999999999998 777554
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCC
Q 003804 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (794)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~ 245 (794)
+.+.+++ .+. +.+ ..+.++|+..|.
T Consensus 145 v~~el~~-------~lg-----------~~~--~~vi~vSAktg~----------------------------------- 169 (600)
T 2ywe_A 145 VKKQIEE-------VLG-----------LDP--EEAILASAKEGI----------------------------------- 169 (600)
T ss_dssp HHHHHHH-------TSC-----------CCG--GGCEECBTTTTB-----------------------------------
T ss_pred HHHHHHH-------hhC-----------CCc--ccEEEEEeecCC-----------------------------------
Confidence 4332222 111 000 013333332111
Q ss_pred CCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHH
Q 003804 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (794)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (794)
.++.||
T Consensus 170 --------------------------------------------------------------------------GI~~Ll 175 (600)
T 2ywe_A 170 --------------------------------------------------------------------------GIEEIL 175 (600)
T ss_dssp --------------------------------------------------------------------------SHHHHH
T ss_pred --------------------------------------------------------------------------CchHHH
Confidence 024588
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcC
Q 003804 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (794)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~ 405 (794)
+++++++|+|. .++++|+.++|||+..+++.|. ++++||++|+|++||.|+++.
T Consensus 176 e~I~~~lp~p~-------------------------~~~~~pl~~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~I~~~~ 229 (600)
T 2ywe_A 176 EAIVNRIPPPK-------------------------GDPQKPLKALIFDSYYDPYRGA-VAFVRIFDGEVKPGDKIMLMS 229 (600)
T ss_dssp HHHHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEECTTCEEEETT
T ss_pred HHHHHhccccc-------------------------ccccCCcceeEEEEeecccceE-EEEEEEEeCEEecCCEEEecc
Confidence 88999999983 1356899999999999998887 999999999999999999754
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe-c---cccccccce-eeecCCCCCcccccccccCCCce
Q 003804 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPV 480 (794)
Q Consensus 406 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~-g---l~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv 480 (794)
.++ .++|.+++.+.+ +.++++++.||||+++. | ++++ ++| ||++.......+++++.++ +|+
T Consensus 230 ----~~~-----~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~ 296 (600)
T 2ywe_A 230 ----TGK-----EYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDI--RIGDTITHAKNPTKEPVPGFQPA-KPM 296 (600)
T ss_dssp ----TTE-----EEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSS--CTTCEEEESSSCCSSCCSCCCCC-CCC
T ss_pred ----ccc-----eEeeecccccCC-CceECCEEecCceeeeeccccchhhc--cCCCEEEeCCCccccccCCCCCC-CcE
Confidence 232 369999998887 58899999999999885 5 4455 667 9998765111467888875 999
Q ss_pred EEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEe-----cchhHHHHHHHHHHhhccCCeeeEEcCcEEE
Q 003804 481 VRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVS 555 (794)
Q Consensus 481 ~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g-----~GelHLei~~~~L~~~f~~~v~v~~~~p~V~ 555 (794)
++++|+|.++.|.++|.+||++|.+|||+|++. .+|+|.++.| ||||||||+++||+++| |+++.+++|+|+
T Consensus 297 v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~--~~~v~~~~P~V~ 373 (600)
T 2ywe_A 297 VYAGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY--GVKIITTAPNVI 373 (600)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS--CCCEEECCCEEC
T ss_pred EEEEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc--CceEEEEeeeEE
Confidence 999999999999999999999999999999997 4677766666 99999999999999999 999999999999
Q ss_pred EEeecccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeee
Q 003804 556 FRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRG 635 (794)
Q Consensus 556 yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~ 635 (794)
|||||++.. + +++++ + .+++|+.|
T Consensus 374 yreti~~~g----------~----~~~~~-------------~-----------------------------p~~~p~~~ 397 (600)
T 2ywe_A 374 YRVKKKFTD----------E----VIEVR-------------N-----------------------------PMDFPDNA 397 (600)
T ss_dssp EEEEETTCS----------S----CEEES-------------S-----------------------------GGGSCSCG
T ss_pred EEEEecCCC----------c----EEEEe-------------C-----------------------------hhhCCCCC
Confidence 999997521 1 11111 0 13466554
Q ss_pred EEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCC
Q 003804 636 ICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGT 715 (794)
Q Consensus 636 v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~ 715 (794)
+ +. +.||||||+++|.+|++|+|+|+++|++|||++.+++..++
T Consensus 398 ----------~----~~---------------------~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~- 441 (600)
T 2ywe_A 398 ----------G----LI---------------------EYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP- 441 (600)
T ss_dssp ----------G----GE---------------------EEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET-
T ss_pred ----------c----cc---------------------ccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC-
Confidence 0 01 25999999999999999999999999999999999998543
Q ss_pred CcEEEEEEechhhh-hCchHHHhhhcCCceEeeeEecccccc---------CCCCCCC----------ChhHHHHHHHHH
Q 003804 716 PLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDMM---------SSDPLEP----------GSQASQLVLDIR 775 (794)
Q Consensus 716 ~~~~I~a~vP~~e~-~~y~~~Lrs~T~G~g~~~~~f~~y~~~---------~~~~~~~----------~~~~~~~~~~~r 775 (794)
++..|+|.+|++|| +||.++|||+|+|+|+|+++|+||+++ ++++.|. ....++++++.+
T Consensus 442 ~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~ 521 (600)
T 2ywe_A 442 NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLR 521 (600)
T ss_dssp TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHH
T ss_pred CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHH
Confidence 58999999999999 899999999999999999999999999 8887763 235677777765
Q ss_pred H
Q 003804 776 K 776 (794)
Q Consensus 776 ~ 776 (794)
.
T Consensus 522 ~ 522 (600)
T 2ywe_A 522 E 522 (600)
T ss_dssp H
T ss_pred h
Confidence 3
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=3.7e-72 Score=650.50 Aligned_cols=485 Identities=24% Similarity=0.364 Sum_probs=368.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
...||+| +||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+.+..+.+.|.. .+
T Consensus 3 ~irnI~I---iGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGiTi~~~~~~~~~~~-----------~~ 67 (599)
T 3cb4_D 3 NIRNFSI---IAHIDHGKSTLSDRIIQICGGLSDREME-AQVLDSMDLERERGITIKAQSVTLDYKA-----------SD 67 (599)
T ss_dssp TEEEEEE---ECCC----CCHHHHHHHHTTC---------------------------CEEEEEEEC-----------TT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHhcCCccccccc-ccccccchhhhcccceeeeeEEEEEEec-----------CC
Confidence 3578999 9999999999999999999988764333 5789999999999999999999999862 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++++.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|..+...++|+|+|+||+|+. +++++++
T Consensus 68 g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~----~a~~~~v 143 (599)
T 3cb4_D 68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLP----AADPERV 143 (599)
T ss_dssp SCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHH
T ss_pred CCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcc----cccHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999999999998 7775554
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~ 246 (794)
.+.+.+. +.. .+ ..+.++|+..|.
T Consensus 144 ~~ei~~~-------lg~-----------~~--~~vi~vSAktg~------------------------------------ 167 (599)
T 3cb4_D 144 AEEIEDI-------VGI-----------DA--TDAVRCSAKTGV------------------------------------ 167 (599)
T ss_dssp HHHHHHH-------TCC-----------CC--TTCEEECTTTCT------------------------------------
T ss_pred HHHHHHH-------hCC-----------Cc--ceEEEeecccCC------------------------------------
Confidence 4333221 110 00 012233331110
Q ss_pred CceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHH
Q 003804 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (794)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (794)
.++.|++
T Consensus 168 -------------------------------------------------------------------------GI~~Ll~ 174 (599)
T 3cb4_D 168 -------------------------------------------------------------------------GVQDVLE 174 (599)
T ss_dssp -------------------------------------------------------------------------THHHHHH
T ss_pred -------------------------------------------------------------------------CchhHHH
Confidence 0245888
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCC
Q 003804 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (794)
Q Consensus 327 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 406 (794)
++++++|+|. .++++|+.++||++..+++.|. ++++||++|+|++||.+++..
T Consensus 175 ~I~~~lp~p~-------------------------~~~~~p~~alI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~~~~- 227 (599)
T 3cb4_D 175 RLVRDIPPPE-------------------------GDPEGPLQALIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVKVMS- 227 (599)
T ss_dssp HHHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESCEESSCEEEETT-
T ss_pred HHhhcCCCcc-------------------------ccccCCceeeeeeccccccccE-EEEEEEEeCEEecCCEEEecc-
Confidence 8999999983 1356899999999999999887 999999999999999999754
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe-c---cccccccce-eeecCCCCCcccccccccCCCceE
Q 003804 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVV 481 (794)
Q Consensus 407 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~-g---l~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~ 481 (794)
+++ .++|.+++.+.+. .++++++.||||+++. | ++++ ++| |+++.......+++++.++ +|++
T Consensus 228 ---~~~-----~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~v 295 (599)
T 3cb4_D 228 ---TGQ-----TYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGA--PVGDTLTLARNPAEKALPGFKKV-KPQV 295 (599)
T ss_dssp ---TCC-----EEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGS--CTTCEEEESSSCCSSCCTTCCCC-CCCE
T ss_pred ---ccc-----eeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccC--ccCCEeeecCCccccccccccCC-Ccce
Confidence 233 2699999988875 8899999999999884 4 4455 567 9998765112567778875 9999
Q ss_pred EEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEcCCCcEEEEe-----cchhHHHHHHHHHHhhccCCeeeEEcCcEEEE
Q 003804 482 RVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSF 556 (794)
Q Consensus 482 ~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g-----~GelHLei~~~~L~~~f~~~v~v~~~~p~V~y 556 (794)
+++++|.+..|.++|.++|.+|.++||+|.+. .+|+|.++.| ||||||||+++||+++| |+++.+++|+|+|
T Consensus 296 ~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~--~~~~~~~~P~V~y 372 (599)
T 3cb4_D 296 YAGLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY--DLDLITTAPTVVY 372 (599)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS--CCCEEECCCEECE
T ss_pred EEEEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc--CceEEEEeeeEEE
Confidence 99999999999999999999999999999997 5678776666 99999999999999999 9999999999999
Q ss_pred EeecccccceeEeecCCCceeEEEEEEeeCCccchhhhccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeeeE
Q 003804 557 RETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRGI 636 (794)
Q Consensus 557 rETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v 636 (794)
||||++.... . |.+ | . ++ |..+
T Consensus 373 reti~~g~~~---------------~-------~~~-------p-~----~~-----------------------p~~~- 394 (599)
T 3cb4_D 373 EVETTSREVI---------------Y-------VDS-------P-S----KL-----------------------PAVN- 394 (599)
T ss_dssp EEEESSSCEE---------------E-------ESS-------G-G----GS-----------------------CCGG-
T ss_pred EEEecCCceE---------------E-------ecC-------h-h----hC-----------------------CCcc-
Confidence 9999753210 0 100 0 1 11 1100
Q ss_pred EEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCC
Q 003804 637 CFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTP 716 (794)
Q Consensus 637 ~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~ 716 (794)
. -+.||||||+++|.+|++|+|+|+++|++|||++.+++..+ +
T Consensus 395 --------------~---------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~--~ 437 (599)
T 3cb4_D 395 --------------N---------------------IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG--N 437 (599)
T ss_dssp --------------G---------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT--T
T ss_pred --------------c---------------------cchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC--C
Confidence 0 02599999999999999999999999999999999999865 3
Q ss_pred cEEEEEEechhhh-hCchHHHhhhcCCceEeeeEecccccc---------CCCCCCC----------ChhHHHHHHHHHH
Q 003804 717 LYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDMM---------SSDPLEP----------GSQASQLVLDIRK 776 (794)
Q Consensus 717 ~~~I~a~vP~~e~-~~y~~~Lrs~T~G~g~~~~~f~~y~~~---------~~~~~~~----------~~~~~~~~~~~r~ 776 (794)
+..|+|.+|++|| +||.++|||+|+|+|+|+|+|+||+++ ++++.|. ....++++.+.+.
T Consensus 438 ~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (599)
T 3cb4_D 438 QVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKD 517 (599)
T ss_dssp EEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred eEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEecccccccccCCcEecccceeccHHHHHHHHHHHHHHHHh
Confidence 8999999999999 899999999999999999999999999 6666552 2356777777653
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=7.6e-62 Score=559.39 Aligned_cols=441 Identities=19% Similarity=0.252 Sum_probs=308.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc------cCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~------~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
+..+|++ +||+|||||||+++|++..|.+... .....+.+|+.+.|++||+|+.++...+.|.
T Consensus 12 ~~~~I~I---iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-------- 80 (529)
T 2h5e_A 12 KRRTFAI---ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH-------- 80 (529)
T ss_dssp TEEEEEE---EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--------
T ss_pred CCCEEEE---ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--------
Confidence 4689999 9999999999999999988876441 0111457899999999999999999999885
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccC
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 160 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~ 160 (794)
++.++|||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+.+...++|+++|+||+|+. +
T Consensus 81 --------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~----~ 148 (529)
T 2h5e_A 81 --------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD----I 148 (529)
T ss_dssp --------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC----C
T ss_pred --------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc----c
Confidence 8999999999999999999999999999999999999999999999999998999999999999998 7
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhccc
Q 003804 161 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 240 (794)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~ 240 (794)
.++.++.+.+++. +.. ...| .++|++|+..+.++ .|+.....+.|
T Consensus 149 ~~~~~~~~~i~~~-------l~~---------~~~~--~~~pi~sa~~~~Gv--------------~dl~~~~~~~~--- 193 (529)
T 2h5e_A 149 RDPMELLDEVENE-------LKI---------GCAP--ITWPIGCGKLFKGV--------------YHLYKDETYLY--- 193 (529)
T ss_dssp SCHHHHHHHHHHH-------HCC---------EEEE--SEEEESCGGGCCEE--------------EETTTTEEEEC---
T ss_pred ccHHHHHHHHHHH-------hCC---------Cccc--eecceecccCccee--------------eehhhhhHhhh---
Confidence 7755444433332 211 1122 24666777544432 11111112222
Q ss_pred ccCCCCCc-eee-cCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hcc
Q 003804 241 FFDPATRK-WTS-RNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTW 317 (794)
Q Consensus 241 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~ 317 (794)
....+. +.. .+.+ ...+. ++.+. .+++++++|+++ .++..++.. ..+.+++. ..+
T Consensus 194 --~~~~g~~~~~~~~i~--~~~~~----------~l~e~---~~~~~~~~~~e~--~~l~~~~~~---~~~~~~~~~~~~ 251 (529)
T 2h5e_A 194 --QSGKGHTIQEVRIVK--GLNNP----------DLDAA---VGEDLAQQLRDE--LELVKGASN---EFDKELFLAGEI 251 (529)
T ss_dssp --CTTCCSSCCCCCEEC--CSSCH----------HHHHH---HCHHHHHHHHHH--HHHHHHHSC---CCCHHHHHTTSE
T ss_pred --cccCCCcccccccCC--CCCHH----------HHHHh---hCHHHHHHhhcc--cchhhhhhh---hhhHHHHHhCce
Confidence 110000 000 0000 00000 11222 145667777776 333222221 11122333 456
Q ss_pred ccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCC-CCCeEEEEEEeee---cCCCCc
Q 003804 318 LPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIP---ASDKGR 383 (794)
Q Consensus 318 ~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~plva~VfK~~~---~~~~g~ 383 (794)
+|+ ++.|||++++++|+|.+++.. ...+++ ++||+|+|||+.. +++.|+
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~-----------------~~~~~~~~~~~~~~vfKi~~~~d~~~~G~ 314 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD-----------------TRTVEASEDKFTGFVFKIQANMDPKHRDR 314 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS-----------------SCEECTTCCSCEEEEEEECSSCCSSSSCC
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCCCCCccccc-----------------ccccCCCCCCeEEEEEEEeeccCcCCCce
Confidence 775 689999999999999643210 001222 6899999999976 355787
Q ss_pred ceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecC
Q 003804 384 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNE 462 (794)
Q Consensus 384 ~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~ 462 (794)
++|+|||||+|++||.|++.+ .++ .+||++++.++|.+++++++|.|||||++.|++++ ++| |||+.
T Consensus 315 -i~~~RV~sG~l~~g~~v~~~~----~~~-----~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~--~~Gdtl~~~ 382 (529)
T 2h5e_A 315 -VAFMRVVSGKYEKGMKLRQVR----TAK-----DVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI--QIGDTFTQG 382 (529)
T ss_dssp -CEEEEEEESCEETTCEEEETT----TTE-----EEECSCEECCCC-----CCEECTTCEEEECCSSCC--CTTCEEESS
T ss_pred -EEEEEEecCeEcCCCEEEEee----CCC-----EEEeceeeEEeCCCceEcceECCCCEEEEeccCCC--ccCCEeecC
Confidence 999999999999999999643 333 37999999999999999999999999999999987 677 99986
Q ss_pred CCCCcccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhc
Q 003804 463 KEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDF 541 (794)
Q Consensus 463 ~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f 541 (794)
+ ...++++.++ .|+++++|+|+++.|.++|.+||++|++||| +++.++ +|||++|+|||||||||+++||+++|
T Consensus 383 ~---~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey 457 (529)
T 2h5e_A 383 E---MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEY 457 (529)
T ss_dssp C---CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHS
T ss_pred C---ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHh
Confidence 5 3467788876 8999999999999999999999999999998 778776 89999999999999999999999999
Q ss_pred cCCeeeEEcCcEEEEEeecccc
Q 003804 542 MGGAEIIKSDPVVSFRETVLEK 563 (794)
Q Consensus 542 ~~~v~v~~~~p~V~yrETi~~~ 563 (794)
|+++.+++|+|+|||||...
T Consensus 458 --~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 458 --NVEAVYESVNVATARWVECA 477 (529)
T ss_dssp --SCCEEEECCCCSEEEEEECS
T ss_pred --CcEEEEecCceeEEEEEcCC
Confidence 99999999999999999644
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.3e-60 Score=548.59 Aligned_cols=440 Identities=20% Similarity=0.276 Sum_probs=331.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc---C---CceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV---A---GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~---~---G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
+..+|+| +||+|||||||+++|++.+|.+.... . .....+|+.+.|++||+|+.++...+.|.
T Consensus 12 ~~r~IaI---iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-------- 80 (528)
T 3tr5_A 12 MRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK-------- 80 (528)
T ss_dssp TEEEEEE---EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--------
T ss_pred cCCEEEE---ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--------
Confidence 4679999 99999999999999999999885420 0 11357899999999999999999999985
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccC
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 160 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~ 160 (794)
++.++|||||||.+|..++.++++.+|+||+|||+.+|++.|+..+|+++...++|+++|+||+|+. +
T Consensus 81 --------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~----~ 148 (528)
T 3tr5_A 81 --------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD----T 148 (528)
T ss_dssp --------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC----C
T ss_pred --------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc----c
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcC--CChHhHHHHhhc
Q 003804 161 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWG 238 (794)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~--id~~~l~~~~wg 238 (794)
.++.+..+.+++.+. . ...| .++|++++ ..|. +|+.....+.|.
T Consensus 149 ~~~~~~l~ei~~~l~---~-------------~~~~--~~~pig~~----------------~~f~gv~dl~~~~~~~~~ 194 (528)
T 3tr5_A 149 RPSIELLDEIESILR---I-------------HCAP--VTWPIGMG----------------KYFKGIYHLIEDAIYLYQ 194 (528)
T ss_dssp SCHHHHHHHHHHHHC---C-------------EEEE--SEEEESCG----------------GGCCEEEETTTTEEEECC
T ss_pred ccHHHHHHHHHHhhC---C-------------Ccee--eecccccC----------------CceeEEEEeecCEEEEec
Confidence 876655444433221 1 0112 24555544 2221 344444344442
Q ss_pred ccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHH-hcc
Q 003804 239 ENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTW 317 (794)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~ 317 (794)
+. ........+ ..... -++ +++..+. ++ +++|+++ +++..++... ..++++. .++
T Consensus 195 ~~----~~~~~~~~~-----~~~~~----~~~---~~~~~l~--~~-~~~~~e~--~~l~~~~~~~---~~~~~~~~~~~ 250 (528)
T 3tr5_A 195 PG----KHERVGESE-----RIEGI----NNP---ELDKKLG--DL-ASELRNE--IELVKGASHP---FEREGYLKGEL 250 (528)
T ss_dssp TT----SSSSTTCSC-----EEECT----TCH---HHHHHHT--HH-HHHHHHH--HHHHHHHSCC---CCHHHHHTTSE
T ss_pred CC----CCCcccccc-----ccccc----chH---HHHHHHH--HH-HHHHhhh--cchhhhhhhH---HHHHHHhcCce
Confidence 11 000010000 00000 011 1111111 11 5666665 2222111110 0022322 467
Q ss_pred ccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccC-CCCCeEEEEEEeee--cC-CCCc
Q 003804 318 LPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD-PEGPLMLYVSKMIP--AS-DKGR 383 (794)
Q Consensus 318 ~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~plva~VfK~~~--~~-~~g~ 383 (794)
+|+ ++.|||++++++|+|.+..... ..++ .++|++|+|||+.. ++ +.|+
T Consensus 251 ~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~-----------------~~~~~~~~~~~~~VFKi~~~~dp~~~g~ 313 (528)
T 3tr5_A 251 TPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS-----------------RLVKPEEEKFSGFVFKIQANMDPGHRDR 313 (528)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS-----------------SCBCTTSSSCEEEEEEEEECCC-CCCCE
T ss_pred eEEEeccccCCccHHHHHHHHHHhCCCCCcccccc-----------------eeeCCCcccceeEEEEEecccCccCCce
Confidence 775 7999999999999996532110 0112 36899999999985 66 7787
Q ss_pred ceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecC
Q 003804 384 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNE 462 (794)
Q Consensus 384 ~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~ 462 (794)
++|+|||||+|++|+.|++. +++++ +||++++.++|+++++|++|.|||||++.|++++ ++| |||+.
T Consensus 314 -l~~~RV~sG~l~~g~~v~~~----~~~~~-----~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~--~~GDtl~~~ 381 (528)
T 3tr5_A 314 -IAFLRIASGQYQKGMKAYHV----RLKKE-----IQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI--QIGDTFTQG 381 (528)
T ss_dssp -EEEEEEEESCEETTEEEEET----TTTEE-----EEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC--CTTCEEESS
T ss_pred -EEEEEEecCeEcCCCEEEec----CCCce-----EEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC--ccCCEEcCC
Confidence 99999999999999999953 34443 7999999999999999999999999999999987 778 99984
Q ss_pred CCCCcccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEEEc-CCCcEEEEecchhHHHHHHHHHHhhc
Q 003804 463 KEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDF 541 (794)
Q Consensus 463 ~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f 541 (794)
. ...+.++.++ .|+++++|+|+++.|.++|.+||++|++|||+ ++..+ +|||++|+|||||||||+++||+++|
T Consensus 382 ~---~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey 456 (528)
T 3tr5_A 382 E---RFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEY 456 (528)
T ss_dssp C---CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHH
T ss_pred C---CcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHh
Confidence 3 4567778876 89999999999999999999999999999997 66666 89999999999999999999999999
Q ss_pred cCCeeeEEcCcEEEEEeecccc
Q 003804 542 MGGAEIIKSDPVVSFRETVLEK 563 (794)
Q Consensus 542 ~~~v~v~~~~p~V~yrETi~~~ 563 (794)
|+++.+++|+|+|+|+|...
T Consensus 457 --~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 457 --NVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp --CCCEEEECCSCCEEEEEECS
T ss_pred --CcEEEEecCceEEEEEecCC
Confidence 99999999999999999753
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=4.3e-39 Score=340.69 Aligned_cols=196 Identities=22% Similarity=0.389 Sum_probs=159.0
Q ss_pred EEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEeCCC----CC-----HhHHHHHHHHHHhcCCcEEEEE
Q 003804 445 AMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVA----SD-----LPKLVEGLKRLAKSDPMVVCSM 514 (794)
Q Consensus 445 ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~----~d-----~~kl~~aL~~L~~eDPsl~v~~ 514 (794)
|++||+++ .+| |||+... +.+++++.++ +|+++++|+|.+. .| ..+|.++|.+|.++||+|+|..
T Consensus 2 av~Gl~~~--~iGDTl~~~~~--p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGEL--KISDTICAQNA--VEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCC--ccCCEEcCCCC--cccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 57899887 678 9999876 6778888886 9999999999987 55 6799999999999999999999
Q ss_pred c-CCCcEEEEecchhHHHHHHHHHHhhccCCeeeEEcCcEEEEEeecccccceeEeecCCCceeEEEEEEeeCCccchhh
Q 003804 515 E-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEA 593 (794)
Q Consensus 515 ~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~ 593 (794)
+ +++|++|+|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE---g~ev~v~~P~V~YrEt--~------------------------------- 120 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE---GFELAVSRPEVIIXEE--D------------------------------- 120 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH---TBCEEECCCEECCEEE--T-------------------------------
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc---CceEEEeCCEEEEEEE--C-------------------------------
Confidence 8 8999999999999999999999999 9999999999999996 0
Q ss_pred hccCCCCCCCCccchHHhHHHHHHHHHHHHHcCCcCCCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcC
Q 003804 594 IDDGRIGPRDDPKYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 673 (794)
Q Consensus 594 i~~g~i~~~~~~~~~~~i~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~ 673 (794)
|
T Consensus 121 ---G---------------------------------------------------------------------------- 121 (332)
T 3e3x_A 121 ---G---------------------------------------------------------------------------- 121 (332)
T ss_dssp ---T----------------------------------------------------------------------------
T ss_pred ---C----------------------------------------------------------------------------
Confidence 1
Q ss_pred CceecCeEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeeeEeccc
Q 003804 674 PRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHW 753 (794)
Q Consensus 674 ~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~~f~~y 753 (794)
+||||||+++|.||++++|+|+++|++|||.|.+++..++ +++.|+|.+|+++|+||.++|||+|+|+|+|++.|+||
T Consensus 122 -~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~-g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y 199 (332)
T 3e3x_A 122 -QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGK-GRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHY 199 (332)
T ss_dssp -EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSS-SEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEE
T ss_pred -EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECCC-CeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCc
Confidence 3899999999999999999999999999999999988643 58899999999999999999999999999999999999
Q ss_pred ccc-CCCCCC
Q 003804 754 DMM-SSDPLE 762 (794)
Q Consensus 754 ~~~-~~~~~~ 762 (794)
+++ |+++-.
T Consensus 200 ~p~~pg~i~~ 209 (332)
T 3e3x_A 200 GPHXGGNIGQ 209 (332)
T ss_dssp EECCCCSCSC
T ss_pred eEcCCCcccc
Confidence 999 898743
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=2e-29 Score=284.57 Aligned_cols=286 Identities=19% Similarity=0.284 Sum_probs=207.7
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc----------CCc-----eeecCChhhHhhhCcccccceEEEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----------~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (794)
.+.++|++ +||+|+|||||+++|++.+|.+.... .|+ .+.+|..++|++||+|++.....+.
T Consensus 15 k~~~~i~i---iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 15 KEHVNVVF---IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CceeEEEE---EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 35689999 99999999999999999999886542 221 3578999999999999999988887
Q ss_pred eecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcc-------hhHHHHHHHHHhcCC
Q 003804 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERI 143 (794)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~-------~qt~~~~~~~~~~~~ 143 (794)
+. ++.++|||||||.+|...+..+++.+|++|+|||+.+|+. +||++++..+...++
T Consensus 92 ~~----------------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v 155 (439)
T 3j2k_7 92 TE----------------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV 155 (439)
T ss_pred cC----------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCC
Confidence 75 7899999999999999999999999999999999999986 799999999999999
Q ss_pred c-cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeecc-CceeeeccCccceeeehhhHHHHH
Q 003804 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPE-KGTVAFSAGLHGWAFTLTNFAKMY 221 (794)
Q Consensus 144 ~-~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~v~~~s~~~g~~~~~~~~a~~~ 221 (794)
| .|+++||||+. ..++. .++++++.+++...+..+. +.|. ..++...|++.|++..-
T Consensus 156 ~~iIvviNK~Dl~----~~~~~--~~~~~~i~~~~~~~l~~~g--------~~~~~~~~~i~iSA~~G~ni~~------- 214 (439)
T 3j2k_7 156 KHLIVLINKMDDP----TVNWS--NERYEECKEKLVPFLKKVG--------FNPKKDIHFMPCSGLTGANLKE------- 214 (439)
T ss_pred CeEEEEeecCCCc----ccchH--HHHHHHHHHHHHHHHHHhc--------ccccCCeeEEEeeccCCccccc-------
Confidence 9 78999999996 44322 1234444444444443211 1111 12455567777664310
Q ss_pred hhhcCCChHhHHH-HhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHH
Q 003804 222 ASKFGVDESKMME-RLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSE 300 (794)
Q Consensus 222 ~~~~~id~~~l~~-~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~ 300 (794)
+.. .-| |+ +
T Consensus 215 ----------l~~~~~w----~~------------------------------------------------g-------- 224 (439)
T 3j2k_7 215 ----------QSDFCPW----YI------------------------------------------------G-------- 224 (439)
T ss_pred ----------ccccccc----cC------------------------------------------------c--------
Confidence 000 011 00 0
Q ss_pred HHHHhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCC
Q 003804 301 EKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 380 (794)
Q Consensus 301 el~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~ 380 (794)
..|++.+ +.+|.|. .+.++|+.+.|..++. +
T Consensus 225 ---------------------~~L~~~l-~~i~~~~-------------------------~~~~~p~r~~v~~~~~--~ 255 (439)
T 3j2k_7 225 ---------------------LPFIPYL-DNLPNFN-------------------------RSVDGPIRLPIVDKYK--D 255 (439)
T ss_pred ---------------------hHHHHHH-HhCCCCc-------------------------cCCCCCeEEEEEEEEc--C
Confidence 1244433 3355552 1245788888888764 4
Q ss_pred CCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEE--Eeccccccccce-
Q 003804 381 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA--MVGLDQYITKNA- 457 (794)
Q Consensus 381 ~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~a--i~gl~~~~~~tg- 457 (794)
.|. +..+||.+|+|++||.|.+++.+ . ..+|.+|+. ...++++|.|||+|+ +.|++..-.+.|
T Consensus 256 ~G~-v~~G~v~~G~l~~Gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~ 321 (439)
T 3j2k_7 256 MGT-VVLGKLESGSIFKGQQLVMMPNK----H-----NVEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGF 321 (439)
T ss_pred CCe-EEEEEEEeeEEecCCEEEEccCC----c-----eEEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcE
Confidence 566 99999999999999999986532 2 258888875 457899999999999 667775544667
Q ss_pred eeecCCC
Q 003804 458 TLTNEKE 464 (794)
Q Consensus 458 Tl~~~~~ 464 (794)
+++++++
T Consensus 322 vl~~~~~ 328 (439)
T 3j2k_7 322 ILCDPSN 328 (439)
T ss_pred EecCCCC
Confidence 7887654
No 15
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.97 E-value=6.2e-30 Score=285.60 Aligned_cols=284 Identities=20% Similarity=0.263 Sum_probs=199.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +||+|||||||+++|+...........-..+.+|..+.|+++|+|++.+...+.+.
T Consensus 2 ~~~~I~i---iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 64 (397)
T 1d2e_A 2 PHVNVGT---IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-------------- 64 (397)
T ss_dssp CEEEEEE---ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------------
T ss_pred CeEEEEE---EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------------
Confidence 4689999 99999999999999986431100000000224788889999999999877666553
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccchhccCCCHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGEE 165 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~~~~~~~~~~~ 165 (794)
++.++|||||||.+|..++..+++.+|++|+|||+.+|+..||+++|..+...++|. ++++||+|+. . +. +
T Consensus 65 --~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~----~-~~-~ 136 (397)
T 1d2e_A 65 --ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV----Q-DS-E 136 (397)
T ss_dssp --SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC----S-CH-H
T ss_pred --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC----C-CH-H
Confidence 789999999999999999999999999999999999999999999999999999995 7899999997 4 32 2
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCC
Q 003804 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (794)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~ 245 (794)
. ++.+.+++...+..+. +.+...++...|++.|++- + ..-|
T Consensus 137 ~---~~~~~~~~~~~l~~~~--------~~~~~~~~i~~SA~~g~n~---------------~-----~~~~-------- 177 (397)
T 1d2e_A 137 M---VELVELEIRELLTEFG--------YKGEETPIIVGSALCALEQ---------------R-----DPEL-------- 177 (397)
T ss_dssp H---HHHHHHHHHHHHHHTT--------SCTTTSCEEECCHHHHHTT---------------C-----CTTT--------
T ss_pred H---HHHHHHHHHHHHHHcC--------CCcccCcEEEeehhhcccc---------------c-----CCCc--------
Confidence 2 2222233333332211 0111113344444332200 0 0000
Q ss_pred CCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccc-hHHH
Q 003804 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA-SSAL 324 (794)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~-~~~L 324 (794)
... +..|
T Consensus 178 ------------------------------------------------------------------------~~g~i~~L 185 (397)
T 1d2e_A 178 ------------------------------------------------------------------------GLKSVQKL 185 (397)
T ss_dssp ------------------------------------------------------------------------THHHHHHH
T ss_pred ------------------------------------------------------------------------cCCcHHHH
Confidence 000 2458
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
++++.+++|.|.. +.++|+.+.|++++..++.|. ++++||++|+|+.||.|.++
T Consensus 186 l~~l~~~~p~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 186 LDAVDTYIPVPTR-------------------------DLEKPFLLPVESVYSIPGRGT-VVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp HHHHHHHSCCCCC-------------------------CTTSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEE
T ss_pred HHHHHHhCCCCCC-------------------------CCCCcEEEEEEEEEEeCCceE-EEEEEEeeceEeCCCEEEEe
Confidence 8999999998831 245789999999998888887 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eeecCC
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~--gl~~~~~~tg-Tl~~~~ 463 (794)
+.+ . ....+|.+|... ..++++|.|||++++. |++..-...| +|+++.
T Consensus 240 ~~~----~---~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 240 GHS----K---NIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp ETT----E---EEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred CCC----C---CeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 532 0 123688888653 3789999999999876 6643323567 888754
No 16
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.97 E-value=5.4e-30 Score=297.62 Aligned_cols=330 Identities=17% Similarity=0.175 Sum_probs=218.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc--c
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--E 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~ 84 (794)
+..+|++ +||+|||||||+++|+..... ++ ..+|+|.......+.|............ .
T Consensus 4 r~~~V~I---vGh~d~GKTTLl~~L~~~~v~------------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~ 64 (594)
T 1g7s_A 4 RSPIVSV---LGHVDHGKTTLLDHIRGSAVA------------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKFS 64 (594)
T ss_dssp CCCEEEE---ECSTTSSHHHHHHHHHHHHHS------------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCG
T ss_pred CCcEEEE---ECCCCCcHHHHHHHHhcccCc------------cc----cCCceecccCeEEEeechhhhhccccccccc
Confidence 4578999 999999999999999754321 11 0145666655544444310000000000 0
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchh---ccC-
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL---ELQ- 160 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~---~~~- 160 (794)
.+.+...++|||||||.+|..++.++++.+|++|+|||+.+|+++||.++|+++...++|+++|+||+|+.-. +.+
T Consensus 65 v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 65 IRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp GGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTC
T ss_pred cccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCC
Confidence 1112346999999999999999999999999999999999999999999999999999999999999999610 000
Q ss_pred -------CCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeecc----------CceeeeccCccceeeehhhHHHHHhh
Q 003804 161 -------VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPE----------KGTVAFSAGLHGWAFTLTNFAKMYAS 223 (794)
Q Consensus 161 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------~~~v~~~s~~~g~~~~~~~~a~~~~~ 223 (794)
...+.+.+.+.+.+.++...+.... +.+. ..++...|+..|
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g--------l~~e~~~~l~~~~~~vpvv~vSA~tG-------------- 202 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEG--------FESERFDRVTDFASQVSIIPISAITG-------------- 202 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT--------CEEEEGGGCSCTTTEEEEEECCTTTC--------------
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--------cchHHHHHHHhccCcceEEEEeccCC--------------
Confidence 0123333444444433322221100 0000 000111111100
Q ss_pred hcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHH
Q 003804 224 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 303 (794)
Q Consensus 224 ~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 303 (794)
+
T Consensus 203 ------------------------------------------------------------~------------------- 203 (594)
T 1g7s_A 203 ------------------------------------------------------------E------------------- 203 (594)
T ss_dssp ------------------------------------------------------------T-------------------
T ss_pred ------------------------------------------------------------C-------------------
Confidence 0
Q ss_pred HhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCc
Q 003804 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 383 (794)
Q Consensus 304 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~ 383 (794)
.++.||+++..++|+|.+. ...+++++|+.++|||+..+++.|.
T Consensus 204 ----------------GI~eLl~~I~~~~~~~~~~--------------------~l~~~~~~p~~~~V~~~~~d~g~G~ 247 (594)
T 1g7s_A 204 ----------------GIPELLTMLMGLAQQYLRE--------------------QLKIEEDSPARGTILEVKEETGLGM 247 (594)
T ss_dssp ----------------THHHHHHHHHHHHHHHCSG--------------------GGEECTTSBCEEEEEEEEEETTEEE
T ss_pred ----------------CchhHHHHHHhhccccchh--------------------hhccccCCCceeEEEEEEEeCCcEE
Confidence 1245677777777665321 0123567899999999999998887
Q ss_pred ceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEe--------cCceeeeCccc--CCCEEEEecccccc
Q 003804 384 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM--------GKKQETVEDVP--CGNTVAMVGLDQYI 453 (794)
Q Consensus 384 ~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~--------g~~~~~v~~a~--AGdI~ai~gl~~~~ 453 (794)
++++||++|+|+.||.|++.+. +.. ...+|.+|+.+. +.+..++++|. ||+++++.||+++
T Consensus 248 -v~~~rV~~G~Lk~Gd~v~~~~~----~~~---~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~- 318 (594)
T 1g7s_A 248 -TIDAVIYDGILRKDDTIAMMTS----KDV---ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV- 318 (594)
T ss_dssp -EEEEEEEESEEETTCEEEEEBS----SSE---EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB-
T ss_pred -EEEEEEeeCEEeeCCEEEECCC----CCc---eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC-
Confidence 9999999999999999997542 221 135999999873 67788999998 9999999999987
Q ss_pred ccce-eeecCCCCC------cccccccccCCCceEEEEEEeCCCCCHhHHHHHHHHH
Q 003804 454 TKNA-TLTNEKEVD------AHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 503 (794)
Q Consensus 454 ~~tg-Tl~~~~~~~------~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L 503 (794)
.+| ||+...+.. ...+..+... .+.+.+.|.+...+..++|.++|.++
T Consensus 319 -~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 319 -MAGSPLRVVTDPEKVREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp -CTTCEEEECSSHHHHHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred -CCCCEEEecCCHHHHHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHHHHhC
Confidence 677 887765310 0012233333 66788899999999999999999987
No 17
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.97 E-value=4.8e-29 Score=279.36 Aligned_cols=293 Identities=23% Similarity=0.319 Sum_probs=203.1
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHH---cCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAA---AGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~---~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (794)
...++|++ +||+|||||||+++|+.. .|.... .-....+|..+.|+++|+|++.....+.+.
T Consensus 9 ~~~~~I~i---iG~~~~GKSTLi~~L~~~~~~~g~~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------- 73 (405)
T 2c78_A 9 KPHVNVGT---IGHVDHGKTTLTAALTYVAAAENPNVE--VKDYGDIDKAPEERARGITINTAHVEYETA---------- 73 (405)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHHHHHSCTTSC--CCCHHHHSCSHHHHHHTCCCSCEEEEEECS----------
T ss_pred CCeEEEEE---EcCCCCCHHHHHHHHHhhhhhcCcccc--ccchhhccCCHHHHHcCCCEEeeeeEeccC----------
Confidence 34689999 999999999999999874 221000 001235899999999999999877766653
Q ss_pred cccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccchhccCC
Q 003804 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQV 161 (794)
Q Consensus 83 ~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~~~~~~~ 161 (794)
++.++|||||||.+|..++.++++.+|++|+|||+.+|...||+++|..+...++| +++++||+|+. .
T Consensus 74 ------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~----~- 142 (405)
T 2c78_A 74 ------KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV----D- 142 (405)
T ss_dssp ------SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC----C-
T ss_pred ------CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc----C-
Confidence 78999999999999999999999999999999999999999999999999999999 67999999997 4
Q ss_pred CHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccc
Q 003804 162 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (794)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~ 241 (794)
+.+ .+ +.+.+++...+..+. +.+...++...|+..|++.. +. .+
T Consensus 143 ~~~-~~---~~~~~~~~~~l~~~~--------~~~~~~~~i~~SA~~g~~v~--------------------~~--~~-- 186 (405)
T 2c78_A 143 DPE-LL---DLVEMEVRDLLNQYE--------FPGDEVPVIRGSALLALEQM--------------------HR--NP-- 186 (405)
T ss_dssp CHH-HH---HHHHHHHHHHHHHTT--------SCTTTSCEEECCHHHHHHHH--------------------HH--CT--
T ss_pred cHH-HH---HHHHHHHHHHHHHhc--------ccccCCCEEEccHHHhhhhh--------------------cc--cc--
Confidence 322 22 222223333332211 01111234455554443110 00 00
Q ss_pred cCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccch
Q 003804 242 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPAS 321 (794)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 321 (794)
.+. ++ .. .|.+.+
T Consensus 187 ------~~~----~~-------------------------~~--------------------------------~~~~~i 199 (405)
T 2c78_A 187 ------KTR----RG-------------------------EN--------------------------------EWVDKI 199 (405)
T ss_dssp ------TCC----TT-------------------------SC--------------------------------HHHHHH
T ss_pred ------ccc----cC-------------------------CC--------------------------------cccccH
Confidence 000 00 00 011112
Q ss_pred HHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEE
Q 003804 322 SALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKV 401 (794)
Q Consensus 322 ~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l 401 (794)
..|++++.+++|.|.. +.++|+.+.|..++..++.|. ++++||++|+|+.||.|
T Consensus 200 ~~Ll~~l~~~lp~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v 253 (405)
T 2c78_A 200 WELLDAIDEYIPTPVR-------------------------DVDKPFLMPVEDVFTITGRGT-VATGRIERGKVKVGDEV 253 (405)
T ss_dssp HHHHHHHHHHSCCCCC-------------------------CCSSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEE
T ss_pred HHHHHHHHhhcCCCCC-------------------------CCCCCcEEEEEEEEEcCCCce-EEEEEEecccccCCCEE
Confidence 4589999999998831 245789999888888888887 99999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eeecCC
Q 003804 402 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (794)
Q Consensus 402 ~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~--gl~~~~~~tg-Tl~~~~ 463 (794)
.+++.+ .. ....+|.+|... ..++++|.|||++++. |++..-...| +|+++.
T Consensus 254 ~~~~~~----~~--~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 254 EIVGLA----PE--TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EEESSS----SS--CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred EEeCCC----CC--eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 987532 10 123688888643 3789999999999886 6533223567 888754
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=3.9e-29 Score=282.37 Aligned_cols=289 Identities=23% Similarity=0.342 Sum_probs=188.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (794)
.+.++|++ +||+|||||||+++|++..|.+... ..|+ ++.+|..++|++||+|++.+...+.
T Consensus 4 k~~~~I~i---iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 4 KPHLNLIV---IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp CCEEEEEE---EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCEEEEEE---EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 45689999 9999999999999999988776532 1121 1468999999999999999887777
Q ss_pred eecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-------cchhHHHHHHHHHhcCC
Q 003804 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (794)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-------v~~qt~~~~~~~~~~~~ 143 (794)
+. ++.++|||||||.+|..++..+++.+|++|+|||+.+| +..||++++..+...++
T Consensus 81 ~~----------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~ 144 (435)
T 1jny_A 81 TK----------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGL 144 (435)
T ss_dssp CS----------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTC
T ss_pred cC----------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC
Confidence 64 78999999999999999999999999999999999999 88899999999998998
Q ss_pred c-cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHh
Q 003804 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (794)
Q Consensus 144 ~-~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~ 222 (794)
| +++++||||+. ..+.++ ++++.+.+++...+..+. +.+...++...|+..|.+.
T Consensus 145 ~~iivviNK~Dl~----~~~~~~--~~~~~~~~~i~~~~~~~~--------~~~~~~~~i~iSA~~g~~v---------- 200 (435)
T 1jny_A 145 DQLIVAVNKMDLT----EPPYDE--KRYKEIVDQVSKFMRSYG--------FNTNKVRFVPVVAPSGDNI---------- 200 (435)
T ss_dssp TTCEEEEECGGGS----SSTTCH--HHHHHHHHHHHHHHHHTT--------CCCTTCEEEECBTTTTBTT----------
T ss_pred CeEEEEEEcccCC----CccccH--HHHHHHHHHHHHHHHHcC--------CCcCCceEEEeecccCccc----------
Confidence 5 67899999998 532110 123333444444443211 1111123444566544321
Q ss_pred hhcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHH
Q 003804 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (794)
Q Consensus 223 ~~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el 302 (794)
+ + .+ +. + +|+++
T Consensus 201 -----~--e------------------------------~~-------------------~~-~-~~~~g---------- 212 (435)
T 1jny_A 201 -----T--H------------------------------KS-------------------EN-M-KWYNG---------- 212 (435)
T ss_dssp -----T--B------------------------------CC-------------------SS-C-TTCCS----------
T ss_pred -----c--c------------------------------cc-------------------cc-c-ccccc----------
Confidence 0 0 00 00 0 01110
Q ss_pred HHhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003804 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (794)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g 382 (794)
..||+++.. +|.|.. +.+.|+.+.|..++..++.|
T Consensus 213 -------------------~~Ll~~l~~-~~~p~~-------------------------~~~~~~~~~v~~v~~~~~~G 247 (435)
T 1jny_A 213 -------------------PTLEEYLDQ-LELPPK-------------------------PVDKPLRIPIQDVYSISGVG 247 (435)
T ss_dssp -------------------CCHHHHHTT-CCCCCC-------------------------GGGSCCBEEEEEEEEETTTE
T ss_pred -------------------hhHHHHHhc-cCCCCC-------------------------CCCCCeEEEEEEEEEeCCCc
Confidence 126777544 444521 01245555555555556777
Q ss_pred cceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-ee
Q 003804 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TL 459 (794)
Q Consensus 383 ~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~--gl~~~~~~tg-Tl 459 (794)
. ++++||+||+|++||.|++.+. +. ..+|++|... ..++++|.|||++++. |++..-++.| +|
T Consensus 248 ~-v~~g~v~~G~l~~gd~v~~~p~----~~-----~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l 313 (435)
T 1jny_A 248 T-VPVGRVESGVLKVGDKIVFMPA----GK-----VGEVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDIKRGDVV 313 (435)
T ss_dssp E-EEEEECCBSCEETTCEEEEETT----TE-----EEEEEEEEET----TEEESEECTTCEEEEEEESSCGGGCCTTCEE
T ss_pred E-EEEEEEecCeEEcCCEEEECCc----ee-----EEEEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHcCCccEe
Confidence 6 9999999999999999997642 22 3689999652 4789999999999984 5432223667 88
Q ss_pred ecCCC
Q 003804 460 TNEKE 464 (794)
Q Consensus 460 ~~~~~ 464 (794)
+++..
T Consensus 314 ~~~~~ 318 (435)
T 1jny_A 314 GHPNN 318 (435)
T ss_dssp ECTTS
T ss_pred cCCCC
Confidence 87643
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.1e-28 Score=287.67 Aligned_cols=288 Identities=20% Similarity=0.250 Sum_probs=173.1
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (794)
.+.++|++ +||+|||||||+++|++..+.+... ..|+ .+.+|..+.|+++|+|++.....+.
T Consensus 175 k~~~~I~i---iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 175 KPVVHLVV---TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp CCEEEEEE---ECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred CCccEEEE---EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 35689999 9999999999999999988877543 1222 4588999999999999999988877
Q ss_pred eecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-------chhHHHHHHHHHhcCC
Q 003804 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERI 143 (794)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-------~~qt~~~~~~~~~~~~ 143 (794)
+. ++.++|||||||.+|...+..+++.+|++|+|||+.+|. ..||+.++..+...++
T Consensus 252 ~~----------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgi 315 (592)
T 3mca_A 252 SD----------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGI 315 (592)
T ss_dssp -----------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSC
T ss_pred eC----------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC
Confidence 74 789999999999999999999999999999999999864 8999999999999999
Q ss_pred c-cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhh-hcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHH
Q 003804 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (794)
Q Consensus 144 ~-~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 221 (794)
| +|+|+||||+. .++.+. +..+.+++...+ ..+. +.+...++...|+..|++..-..
T Consensus 316 p~iIvviNKiDl~----~~~~~~----~~~i~~el~~~l~~~~g--------~~~~~~~ii~iSA~~G~gI~e~~----- 374 (592)
T 3mca_A 316 SEIVVSVNKLDLM----SWSEDR----FQEIKNIVSDFLIKMVG--------FKTSNVHFVPISAISGTNLIQKD----- 374 (592)
T ss_dssp CCEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHTTTSC--------CCGGGEEEEEECSSSCSSSCSCC-----
T ss_pred CeEEEEEeccccc----cccHHH----HHHHHHHHHHHHHHhhC--------CCccceEEEEEecccCccccccc-----
Confidence 8 77899999998 666443 334444444444 2111 12222245667887776431000
Q ss_pred hhhcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHH
Q 003804 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (794)
Q Consensus 222 ~~~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~e 301 (794)
... ..-|
T Consensus 375 -------~~~--~~~w---------------------------------------------------------------- 381 (592)
T 3mca_A 375 -------SSD--LYKW---------------------------------------------------------------- 381 (592)
T ss_dssp -------CCG--GGGT----------------------------------------------------------------
T ss_pred -------ccc--cccc----------------------------------------------------------------
Confidence 000 0001
Q ss_pred HHHhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCC
Q 003804 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (794)
Q Consensus 302 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~ 381 (794)
+-. ..|++++..++|.+ .+.++|+.+.|..++.. ..
T Consensus 382 ----------------~~g-~~Lle~l~~~~pp~--------------------------~~~~~p~r~~v~~v~~~-~~ 417 (592)
T 3mca_A 382 ----------------YKG-PTLLSALDQLVPPE--------------------------KPYRKPLRLSIDDVYRS-PR 417 (592)
T ss_dssp ----------------CCS-CCHHHHHHTSCCCS--------------------------CTTTSCCEEEEEEEEEE-TT
T ss_pred ----------------cch-HHHHHHHHhhcccc--------------------------ccccccchheeeEEEec-CC
Confidence 000 13677777777732 12457888888888877 65
Q ss_pred CcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeC-cccCCCEEEE--eccccccccce-
Q 003804 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE-DVPCGNTVAM--VGLDQYITKNA- 457 (794)
Q Consensus 382 g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~-~a~AGdI~ai--~gl~~~~~~tg- 457 (794)
|. +..+||.+|+|++||.|.+++.+ . ..+|..|.. ...+++ +|.|||+|++ .|++..-++.|
T Consensus 418 g~-v~~G~v~~G~l~~Gd~v~i~p~~----~-----~~~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~ 483 (592)
T 3mca_A 418 SV-TVTGRVEAGNVQVNQVLYDVSSQ----E-----DAYVKNVIR----NSDPSSTWAVAGDTVTLQLADIEVNQLRPGD 483 (592)
T ss_dssp EE-EEEEEEEESEEETTCEEEETTTT----E-----EEEEEEEEC----SSSCSCCEEETTCEEEEEESSSCGGGCCTTC
T ss_pred eE-EEEEEEeeeeEccCCEEEEccCC----c-----eEEEEEEEE----cCccCcceecCCCEEEEEEccccccccceEE
Confidence 65 88999999999999999986532 2 258888885 346899 9999999985 57665434667
Q ss_pred eeecCCC
Q 003804 458 TLTNEKE 464 (794)
Q Consensus 458 Tl~~~~~ 464 (794)
+|+++..
T Consensus 484 vl~~~~~ 490 (592)
T 3mca_A 484 ILSNYEN 490 (592)
T ss_dssp EEECSSS
T ss_pred EeccCCC
Confidence 8887653
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=6.1e-27 Score=267.89 Aligned_cols=297 Identities=20% Similarity=0.308 Sum_probs=191.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEEEe
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYY 71 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~~ 71 (794)
+.++|++ +||+|+|||||+++|++..+.+... ..|+ .+.+|....|+++|+|++.....+.+
T Consensus 32 ~~~ki~i---iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 108 (483)
T 3p26_A 32 PHLSFVV---LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 108 (483)
T ss_dssp CEEEEEE---ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec
Confidence 5689999 9999999999999999998877542 1221 35789999999999999999888776
Q ss_pred ecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-------cchhHHHHHHHHHhcCCc
Q 003804 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR 144 (794)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-------v~~qt~~~~~~~~~~~~~ 144 (794)
. ++.++|||||||.+|...+..+++.+|++|+|||+.+| +..||++++..+...+++
T Consensus 109 ~----------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~ 172 (483)
T 3p26_A 109 H----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 172 (483)
T ss_dssp S----------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCC
T ss_pred C----------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCC
Confidence 4 78999999999999999999999999999999999998 678999999999888876
Q ss_pred -cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhh
Q 003804 145 -PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 223 (794)
Q Consensus 145 -~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 223 (794)
+|+++||+|+. .++... +.++.+++...+..+. +.+...++...|+..|++..-
T Consensus 173 ~iIvviNK~Dl~----~~~~~~----~~~i~~~~~~~l~~~g--------~~~~~~~~i~iSA~~g~gi~e--------- 227 (483)
T 3p26_A 173 NLIIAMNKMDNV----DWSQQR----FEEIKSKLLPYLVDIG--------FFEDNINWVPISGFSGEGVYK--------- 227 (483)
T ss_dssp CEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHHHHT--------CCGGGEEEEECCSSSCTTSSS---------
T ss_pred cEEEEEECcCcc----cchHHH----HHHHHHHHHHHHHHcC--------CCcccceEEEEeeecCCCccc---------
Confidence 77899999998 655332 2333333333332211 111122455567766653210
Q ss_pred hcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHH
Q 003804 224 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 303 (794)
Q Consensus 224 ~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 303 (794)
.. .......| |..
T Consensus 228 -l~---~~~~~~~w----y~g----------------------------------------------------------- 240 (483)
T 3p26_A 228 -IE---YTDEVRQW----YNG----------------------------------------------------------- 240 (483)
T ss_dssp -SC---CCHHHHHH----CCS-----------------------------------------------------------
T ss_pred -cC---cccccccc----cCC-----------------------------------------------------------
Confidence 00 00000112 000
Q ss_pred HhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecC---C
Q 003804 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS---D 380 (794)
Q Consensus 304 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~---~ 380 (794)
|....+|+.+...+|.+. + ..+.+.|+.+.|..++..+ .
T Consensus 241 ---------------~~L~~~L~~i~~~~~~~~-----------p------------~~~~~~p~r~~v~~v~~~~~~~g 282 (483)
T 3p26_A 241 ---------------PNLMSTLENAAFKISKEN-----------E------------GINKDDPFLFSVLEIIPSKKTSN 282 (483)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHH-----------T------------TCCSSSCCEEEEEEEEC---CCS
T ss_pred ---------------CCHHHHHHHHHhhccccc-----------c------------cccCCCceEEEEEEEEccCCcCC
Confidence 001224555555444410 0 0124578888888887655 2
Q ss_pred CCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCceeeeCcccCCCEEEEe--c--cccc
Q 003804 381 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAMV--G--LDQY 452 (794)
Q Consensus 381 ~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~v~~a~AGdI~ai~--g--l~~~ 452 (794)
.|. +..+||.+|+|++||.|.+++.+ . ..+|.+|.... |....++++|.|||+|++. + .+++
T Consensus 283 ~g~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~di 352 (483)
T 3p26_A 283 DLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDI 352 (483)
T ss_dssp CCE-EEEEEEEESEECTTCEEEEETTT----E-----EEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGGGC
T ss_pred Cce-EEEEEEecceEccCCEEEEeCCC----C-----eEEEEEEEEcCccccccccccccEECCCCEEEEEEEecccccC
Confidence 455 89999999999999999986532 2 25888888653 4557899999999999982 3 3444
Q ss_pred cccce-eeecCCC
Q 003804 453 ITKNA-TLTNEKE 464 (794)
Q Consensus 453 ~~~tg-Tl~~~~~ 464 (794)
..| +|++++.
T Consensus 353 --~rG~vl~~~~~ 363 (483)
T 3p26_A 353 --QNGDLAASVDY 363 (483)
T ss_dssp --CTTCEEECTTC
T ss_pred --CceEEEEcCCC
Confidence 556 8887643
No 21
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.95 E-value=5.9e-27 Score=266.49 Aligned_cols=288 Identities=20% Similarity=0.299 Sum_probs=168.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (794)
...++|++ +||+|||||||+++|++.+|.+... ..|+ .+.+|..+.|++||+|++.....+.
T Consensus 41 k~~~~i~i---iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~ 117 (467)
T 1r5b_A 41 KEHVNIVF---IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE 117 (467)
T ss_dssp CEEEEEEE---EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE
T ss_pred CCeeEEEE---EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence 35689999 9999999999999999998877531 1232 3578999999999999999887777
Q ss_pred eecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-------chhHHHHHHHHHhcCC
Q 003804 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERI 143 (794)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-------~~qt~~~~~~~~~~~~ 143 (794)
+. +++++|||||||.+|..++.++++.+|++|+|||+.+|+ ..||++++..+...++
T Consensus 118 ~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~v 181 (467)
T 1r5b_A 118 TE----------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGI 181 (467)
T ss_dssp CS----------------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred cC----------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCC
Confidence 64 789999999999999999999999999999999999997 3799999999999999
Q ss_pred c-cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcc-cCCCCCCceeec-cCceeeeccCccceeeehhhHHHH
Q 003804 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY-EDPLLGDVQVYP-EKGTVAFSAGLHGWAFTLTNFAKM 220 (794)
Q Consensus 144 ~-~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p-~~~~v~~~s~~~g~~~~~~~~a~~ 220 (794)
| +|+++||||+. ..++++ ++++.+.+++...+..+ . +.+ ...++...|++.|++..
T Consensus 182 p~iivviNK~Dl~----~~~~~~--~~~~~i~~e~~~~l~~~~g--------~~~~~~~~~i~vSA~~g~~i~------- 240 (467)
T 1r5b_A 182 NHLVVVINKMDEP----SVQWSE--ERYKECVDKLSMFLRRVAG--------YNSKTDVKYMPVSAYTGQNVK------- 240 (467)
T ss_dssp SSEEEEEECTTST----TCSSCH--HHHHHHHHHHHHHHHHHHC--------CCHHHHEEEEECBTTTTBTTS-------
T ss_pred CEEEEEEECccCC----CccccH--HHHHHHHHHHHHHHHHhcC--------CCccCCceEEecccccccccc-------
Confidence 8 78999999996 433211 12333333343333221 0 000 01134445666554320
Q ss_pred HhhhcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHH
Q 003804 221 YASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSE 300 (794)
Q Consensus 221 ~~~~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~ 300 (794)
.+ ++...
T Consensus 241 ----------~l---------~~~~~------------------------------------------------------ 247 (467)
T 1r5b_A 241 ----------DR---------VDSSV------------------------------------------------------ 247 (467)
T ss_dssp ----------SC---------CCTTT------------------------------------------------------
T ss_pred ----------cc---------ccccc------------------------------------------------------
Confidence 00 00000
Q ss_pred HHHHhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCC
Q 003804 301 EKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 380 (794)
Q Consensus 301 el~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~ 380 (794)
..|+.. ..|++.+ +.+|.|.. +.++|+.+.|..++. .
T Consensus 248 --------------~~w~~g-~~L~~~l-~~i~~~~~-------------------------~~~~p~~~~v~~~~~--~ 284 (467)
T 1r5b_A 248 --------------CPWYQG-PSLLEYL-DSMTHLER-------------------------KVNAPFIMPIASKYK--D 284 (467)
T ss_dssp --------------CSSCCS-CCHHHHH-HHCCCCHH-------------------------HHTSCCEEECCEEEE--S
T ss_pred --------------Cccccc-hhHHHHH-HhCCCCcC-------------------------CCCCCcEEEEEEEEe--C
Confidence 001100 0134433 33666631 124678888887765 3
Q ss_pred CCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--ec-cccccccce
Q 003804 381 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VG-LDQYITKNA 457 (794)
Q Consensus 381 ~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai--~g-l~~~~~~tg 457 (794)
.|. +.++||.+|+|+.||.|.+++.+ . ..+|.+|+.. ...++++|.|||++++ .| .++. +.|
T Consensus 285 ~G~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~~i--~rG 349 (467)
T 1r5b_A 285 LGT-ILEGKIEAGSIKKNSNVLVMPIN----Q-----TLEVTAIYDE---ADEEISSSICGDQVRLRVRGDDSDV--QTG 349 (467)
T ss_dssp SSE-EEEEECCBSEEETTEEEEEETTT----E-----EEEEEEEECT---TCCEESEEETTCEEEEEEESCCTTC--CTT
T ss_pred CCe-EEEEEEeeeEEeeCCEEEEccCC----e-----eEEEEEEecc---CCcEeeEEcCCCEEEEEEeccHhhC--Cce
Confidence 565 99999999999999999986522 1 2578777642 3578999999999988 56 3343 566
Q ss_pred -eeecCCC
Q 003804 458 -TLTNEKE 464 (794)
Q Consensus 458 -Tl~~~~~ 464 (794)
+|+++..
T Consensus 350 ~vl~~~~~ 357 (467)
T 1r5b_A 350 YVLTSTKN 357 (467)
T ss_dssp CEEECSSS
T ss_pred EEEeCCCC
Confidence 7887643
No 22
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.95 E-value=4e-27 Score=283.04 Aligned_cols=284 Identities=19% Similarity=0.292 Sum_probs=185.7
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +||+|||||||+++|+...........-..+.+|..+.|+++|+|++...+.+.+.
T Consensus 294 k~~lnIvI---IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~------------- 357 (1289)
T 3avx_A 294 KPHVNVGT---IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP------------- 357 (1289)
T ss_dssp CCEEEEEE---EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-------------
T ss_pred CCeeEEEE---EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-------------
Confidence 34689999 99999999999999986421000000000135788899999999999987766653
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccchhccCCCHH
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 164 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~~~~~~~~~~ 164 (794)
++.++|||||||.+|..++..+++.+|++|+|||+.+|+..||+++|..+...++| +|+++||||+. . +.
T Consensus 358 ---~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv----~-d~- 428 (1289)
T 3avx_A 358 ---TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV----D-DE- 428 (1289)
T ss_dssp ---SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC----C-CH-
T ss_pred ---CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc----c-ch-
Confidence 78999999999999999999999999999999999999999999999999889999 57899999997 4 22
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCC
Q 003804 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~ 244 (794)
+. ++.+.+++...+..+. +.+...++...|++.||.
T Consensus 429 e~---le~i~eEi~elLk~~G--------~~~~~vp~IpvSAktG~n--------------------------------- 464 (1289)
T 3avx_A 429 EL---LELVEMEVRELLSQYD--------FPGDDTPIVRGSALKALE--------------------------------- 464 (1289)
T ss_dssp HH---HHHHHHHHHHHHHHTT--------SCTTTCCEEECCSTTTTT---------------------------------
T ss_pred hh---HHHHHHHHHHHHHhcc--------ccccceeEEEEEeccCCC---------------------------------
Confidence 22 2222233333332211 011112344455544320
Q ss_pred CCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHH
Q 003804 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (794)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (794)
+ .+-| + + .+..|
T Consensus 465 -----------g------------~~~w--~---------------e----------------------------GI~eL 476 (1289)
T 3avx_A 465 -----------G------------DAEW--E---------------A----------------------------KILEL 476 (1289)
T ss_dssp -----------C------------CHHH--H---------------H----------------------------HHHHH
T ss_pred -----------C------------Cccc--c---------------c----------------------------cchhh
Confidence 0 0000 0 0 02458
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEc
Q 003804 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (794)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 404 (794)
++++.+++|.|.. +.++|+.+.|..++..++.|. ++++||++|+|++||.|.+.
T Consensus 477 leaL~~~Ip~P~r-------------------------~~d~Pfr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~V~I~ 530 (1289)
T 3avx_A 477 AGFLDSYIPEPER-------------------------AIDKPFLLPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIV 530 (1289)
T ss_dssp HHHHHHTSCCCCC-------------------------GGGSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEE
T ss_pred HhHHhhhcCCCcc-------------------------ccccceeeeccccccccCCcE-EEEEEEeccEEecCCEEEEe
Confidence 8899999998831 135788888888887788887 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eeecCC
Q 003804 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (794)
Q Consensus 405 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~--gl~~~~~~tg-Tl~~~~ 463 (794)
+.+ .. ...+|..|... ..++++|.|||++++. |++..-...| +|+++.
T Consensus 531 ps~----~~---~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 531 GIK----ET---QKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp SSS----SC---EEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred cCC----Cc---eeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 532 10 13688888542 3679999999998875 6643333567 888654
No 23
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.95 E-value=1.2e-26 Score=263.27 Aligned_cols=298 Identities=23% Similarity=0.339 Sum_probs=205.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEEE
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (794)
.+.++|++ +||+|||||||+++|++..|.++.. ..|+ .+.+|..++|+++|+|++.....+.
T Consensus 5 ~~~~~i~i---iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~ 81 (458)
T 1f60_A 5 KSHINVVV---IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (458)
T ss_dssp CEEEEEEE---EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE
T ss_pred CceeEEEE---EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe
Confidence 45689999 9999999999999999987766431 1232 2357889999999999999988776
Q ss_pred eecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcch-------hHHHHHHHHHhcCC
Q 003804 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-------QTETVLRQALGERI 143 (794)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~-------qt~~~~~~~~~~~~ 143 (794)
+. ++.++|||||||.+|..++..+++.+|++|+|||+.+|... ||+++|..+...++
T Consensus 82 ~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v 145 (458)
T 1f60_A 82 TP----------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV 145 (458)
T ss_dssp CS----------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC
T ss_pred cC----------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCC
Confidence 64 78999999999999999999999999999999999999766 99999999888999
Q ss_pred c-cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHh
Q 003804 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (794)
Q Consensus 144 ~-~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~ 222 (794)
| +|+++||+|+. .++.+. +..+.+++...+..+. +.+...++...|++.|++..-
T Consensus 146 ~~iivviNK~Dl~----~~~~~~----~~~i~~~~~~~l~~~g--------~~~~~~~~i~vSA~~g~nv~~-------- 201 (458)
T 1f60_A 146 RQLIVAVNKMDSV----KWDESR----FQEIVKETSNFIKKVG--------YNPKTVPFVPISGWNGDNMIE-------- 201 (458)
T ss_dssp CEEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHHHHT--------CCGGGCCEEECCTTTCBTTTB--------
T ss_pred CeEEEEEEccccc----cCCHHH----HHHHHHHHHHHHHHcC--------CCccCceEEEeecccCcCccc--------
Confidence 7 77899999998 655433 2333333333332211 111112455667877764210
Q ss_pred hhcCCChHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHH
Q 003804 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (794)
Q Consensus 223 ~~~~id~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el 302 (794)
... ..-| |.. |......+ .++
T Consensus 202 ------~~~--~~~~----~~~----~~~~~~tg---------------------------------------~~~---- 222 (458)
T 1f60_A 202 ------ATT--NAPW----YKG----WEKETKAG---------------------------------------VVK---- 222 (458)
T ss_dssp ------CCS--SCTT----CCC----EEEECSSS---------------------------------------EEE----
T ss_pred ------ccc--cCch----hhc----cccccccc---------------------------------------ccc----
Confidence 000 0012 110 11000000 000
Q ss_pred HHhHHHHHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003804 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (794)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g 382 (794)
...|++++.. +|.|. .+.+.|+.+.|..++..++.|
T Consensus 223 ------------------~~~Ll~~l~~-~~~p~-------------------------~~~~~p~r~~i~~v~~~~g~G 258 (458)
T 1f60_A 223 ------------------GKTLLEAIDA-IEQPS-------------------------RPTDKPLRLPLQDVYKIGGIG 258 (458)
T ss_dssp ------------------ESSHHHHHHT-SCCCC-------------------------CCTTSCCEEEEEEEEEETTTE
T ss_pred ------------------hHHHHHHhhc-cCCCc-------------------------ccCCCCcEEEEEEEEEeCCCc
Confidence 0135666544 45552 024578888888888888888
Q ss_pred cceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-ee
Q 003804 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TL 459 (794)
Q Consensus 383 ~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~--gl~~~~~~tg-Tl 459 (794)
. +.++||.+|+++.||.|.+++.+ . ..+|.+|.. ...++++|.|||++++. |++..-.+.| +|
T Consensus 259 ~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl 324 (458)
T 1f60_A 259 T-VPVGRVETGVIKPGMVVTFAPAG----V-----TTEVKSVEM----HHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVC 324 (458)
T ss_dssp E-EEEEECCBSCBCTTCEEEEETTT----E-----EEEEEEEEE----TTEECSCBCTTCEEEEEESSCCTTTSCTTCEE
T ss_pred E-EEEEEEeCCeEcCCCEEEECCCC----c-----eEEEeEEEE----CCeEEEEEcCCCEEEEEEcCCcccccCceeEE
Confidence 7 99999999999999999987532 1 258888875 23689999999998874 6643222556 78
Q ss_pred ecCC
Q 003804 460 TNEK 463 (794)
Q Consensus 460 ~~~~ 463 (794)
++++
T Consensus 325 ~~~~ 328 (458)
T 1f60_A 325 GDAK 328 (458)
T ss_dssp EETT
T ss_pred ecCC
Confidence 7754
No 24
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.95 E-value=1.7e-26 Score=260.71 Aligned_cols=286 Identities=21% Similarity=0.222 Sum_probs=188.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCccccc----------CCc-------eeecCChhhHhhhCcccccceEEE
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGISL 69 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~----------~G~-------~~~~D~~~~E~~rgiTi~~~~~~~ 69 (794)
..++|++ +||+|||||||+++|++..+.+.... .|. ...+|..++|++||+|++.+...+
T Consensus 23 ~~~~i~i---iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 23 EMLRFLT---CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp EEEEEEE---ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred CceEEEE---EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 4689999 99999999999999999887654321 121 124788899999999999887776
Q ss_pred EeecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEE
Q 003804 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLT 148 (794)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~ 148 (794)
.+. ++.++|||||||.+|..++..+++.+|++|+|||+.+|...||++++..+...++| .|++
T Consensus 100 ~~~----------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvv 163 (434)
T 1zun_B 100 STA----------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVA 163 (434)
T ss_dssp ECS----------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecC----------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEE
Confidence 664 78999999999999999999999999999999999999999999999998888886 6789
Q ss_pred EecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCC
Q 003804 149 VNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVD 228 (794)
Q Consensus 149 iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id 228 (794)
+||+|+. .++.+. +..+.+++...+..+.. .....++...|+..|++..- .+.
T Consensus 164 iNK~Dl~----~~~~~~----~~~i~~~~~~~~~~~g~--------~~~~~~~i~vSA~~g~gi~~---------~~~-- 216 (434)
T 1zun_B 164 INKMDLN----GFDERV----FESIKADYLKFAEGIAF--------KPTTMAFVPMSALKGDNVVN---------KSE-- 216 (434)
T ss_dssp EECTTTT----TSCHHH----HHHHHHHHHHHHHTTTC--------CCSEEEEEECCTTTCTTTSS---------CCT--
T ss_pred EEcCcCC----cccHHH----HHHHHHHHHHHHHHhCC--------CccCceEEEEeccCCCCccc---------ccc--
Confidence 9999998 655432 22333333333322110 00011344556665543100 000
Q ss_pred hHhHHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHH
Q 003804 229 ESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKA 308 (794)
Q Consensus 229 ~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~ 308 (794)
..-| |+. .
T Consensus 217 -----~~~w----~~g--------------------------------------------------~------------- 224 (434)
T 1zun_B 217 -----RSPW----YAG--------------------------------------------------Q------------- 224 (434)
T ss_dssp -----TCTT----CCS--------------------------------------------------C-------------
T ss_pred -----cCcc----ccC--------------------------------------------------c-------------
Confidence 0001 000 0
Q ss_pred HHHHHHhccccchHHHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEE
Q 003804 309 LMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFG 388 (794)
Q Consensus 309 l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~ 388 (794)
.|++. .+.+|.|.. +.+.|+.+.|..++.....++ ...+
T Consensus 225 --------------~L~~~-l~~i~~~~~-------------------------~~~~~~~~~v~~v~~~~~~~~-g~~G 263 (434)
T 1zun_B 225 --------------SLMEI-LETVEIASD-------------------------RNYTDLRFPVQYVNRPNLNFR-GFAG 263 (434)
T ss_dssp --------------CTTHH-HHHSCCTTC-------------------------CCSSSCEEECCEEECSSSSCC-EEEE
T ss_pred --------------hHHHH-HhcCCCccc-------------------------CCCCCcEEEEEEEeccCCCce-EEEE
Confidence 01221 122455421 234677777776655444454 6789
Q ss_pred EEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCC
Q 003804 389 RVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE 464 (794)
Q Consensus 389 RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~ 464 (794)
||.+|+|++||.|.+++. +. ..+|.+|.... .++++|.|||++++...+..-.+.| +|+++..
T Consensus 264 ~v~~G~l~~gd~v~~~p~----~~-----~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 264 TLASGIVHKGDEIVVLPS----GK-----SSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVHADN 327 (434)
T ss_dssp ECCBSCEETTCEEEETTT----CC-----EEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEETTS
T ss_pred EEecceEeCCCEEEEecC----Ce-----EEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEECCCC
Confidence 999999999999998652 22 26889988653 4799999999999986543222456 7887654
No 25
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.94 E-value=8e-26 Score=253.56 Aligned_cols=133 Identities=26% Similarity=0.310 Sum_probs=103.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc-
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE- 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~- 84 (794)
...++|++ +||+|||||||+++|+ | ..+|..++|++||+|++.....+.+....... ++...
T Consensus 8 ~~~~~I~i---iG~~~~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~-~y~~~~ 70 (410)
T 1kk1_A 8 QAEVNIGM---VGHVDHGKTTLTKALT-----------G--VWTDTHSEELRRGITIKIGFADAEIRRCPNCG-RYSTSP 70 (410)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHH-----------T--CCCC--CGGGGSCSSSCCEEEEEEEEECTTTC-CEESSS
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHh-----------C--CccccChhhhcCCcEEEEeeeeeecccccccc-cccccc
Confidence 45689999 9999999999999993 3 24567789999999999887766653110000 00000
Q ss_pred -cC--CC----ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-chhHHHHHHHHHhcCC-ccEEEEecCccc
Q 003804 85 -RQ--GN----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 155 (794)
Q Consensus 85 -~~--~~----~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-~~qt~~~~~~~~~~~~-~~iv~iNKiD~~ 155 (794)
.. +. ...++|||||||.+|..++.++++.+|++|+|||+.+|+ +.||.+++..+...++ |+++++||+|+.
T Consensus 71 ~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 71 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp BCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 00 11 278999999999999999999999999999999999998 9999999988887787 466889999997
No 26
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.94 E-value=2.2e-26 Score=253.63 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=93.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +||+|||||||+++|+ +||+|++.+...+.+. +
T Consensus 23 ~i~i---iG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~----------------~ 59 (370)
T 2elf_A 23 NVAI---IGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKE----------------G 59 (370)
T ss_dssp EEEE---EESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSS----------------S
T ss_pred EEEE---ECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecC----------------C
Confidence 8888 9999999999999993 5789999888777664 7
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEe-cCcc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVN-KMDR 154 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iN-KiD~ 154 (794)
+.++|||||||.+|..++..+++.+|+||+||| .+|+..||+++|..+...++|. |+++| |||+
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 789999999999999999999999999999999 9999999999999999999998 89999 9997
No 27
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-26 Score=269.34 Aligned_cols=294 Identities=20% Similarity=0.296 Sum_probs=203.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhhhCcccccceEEEEe
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYY 71 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~----------~~G~-----~~~~D~~~~E~~rgiTi~~~~~~~~~ 71 (794)
+.++|++ +||+|+|||||+++|++..+.+... ..|+ .+.+|..+.|+++|+|+......+.+
T Consensus 166 ~~lkV~i---vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 166 PHLSFVV---LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCEEEE---ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred CceEEEE---EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 4689999 9999999999999999887776542 1232 35688899999999999999888877
Q ss_pred ecchhhhhccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCC-------cchhHHHHHHHHHhcCCc
Q 003804 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR 144 (794)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~g-------v~~qt~~~~~~~~~~~~~ 144 (794)
. ++.++|||||||.+|...+..+++.+|++|+|||+.+| +..||+.++..+...++|
T Consensus 243 ~----------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~ 306 (611)
T 3izq_1 243 H----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 306 (611)
T ss_dssp S----------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCC
T ss_pred C----------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCC
Confidence 4 78999999999999999999999999999999999987 578999999999998987
Q ss_pred -cEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhh
Q 003804 145 -PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 223 (794)
Q Consensus 145 -~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 223 (794)
+|+|+||+|+. .++... +.++.+.+...+..+. +.+...++...|+..|.+..-
T Consensus 307 ~iIVVvNKiDl~----~~~~~~----~~ei~~~l~~~l~~~g--------~~~~~~~~i~vSA~tG~gI~e--------- 361 (611)
T 3izq_1 307 NLIIAMNKMDNV----DWSQQR----FEEIKSKLLPYLVDIG--------FFEDNINWVPISGFSGEGVYK--------- 361 (611)
T ss_dssp EEEEEEECTTTT----TTCHHH----HHHHHHHHHHHHHHHT--------CCGGGCEEEECCTTTCTTTSS---------
T ss_pred eEEEEEeccccc----chhHHH----HHHHHHHHHHHHHhhc--------ccccCccEEeeecccCCCccc---------
Confidence 77899999998 654322 2333333333332211 111122455567766643200
Q ss_pred hcCCChHh-HHHHhhcccccCCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHH
Q 003804 224 KFGVDESK-MMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (794)
Q Consensus 224 ~~~id~~~-l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el 302 (794)
+.. ....-| |. .+
T Consensus 362 -----l~~~~~~~~W----y~--------g~------------------------------------------------- 375 (611)
T 3izq_1 362 -----IEYTDEVRQW----YN--------GP------------------------------------------------- 375 (611)
T ss_dssp -----CTTSCTTCCS----CC--------SC-------------------------------------------------
T ss_pred -----cCcccccccc----cc--------CC-------------------------------------------------
Confidence 000 000001 10 00
Q ss_pred HHhHHHHHHHHHhccccchHHHHHHHHhcCCC--hhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecC-
Q 003804 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPS--PATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS- 379 (794)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPs--P~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~- 379 (794)
....+|+.+...+|. |. ...+.|+.+.|..++..+
T Consensus 376 -----------------~L~~~L~~l~~~~p~~~p~-------------------------~~~~~p~r~~V~~v~~~~~ 413 (611)
T 3izq_1 376 -----------------NLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIPSKK 413 (611)
T ss_dssp -----------------CHHHHHTTSCCCCCCSSSC-------------------------CSCCSCCEEECCEEECCSS
T ss_pred -----------------cHHHHHHHHhhcccccCcc-------------------------cccccchhhheeeeeccCc
Confidence 011234433334443 21 124578888888877655
Q ss_pred --CCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCceeeeCcccCCCEEEE--ecc--
Q 003804 380 --DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAM--VGL-- 449 (794)
Q Consensus 380 --~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~v~~a~AGdI~ai--~gl-- 449 (794)
..|. +..+||.+|+|++||.|.+++.+ . ..+|.+|.... |..+.++++|.|||+|++ .|+
T Consensus 414 ~~g~g~-v~~G~V~~G~lk~Gd~v~~~p~~----~-----~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~ 483 (611)
T 3izq_1 414 TSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 483 (611)
T ss_dssp SCSSSS-EEEEEEEESEECTTCEEEETTTT----E-----EEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCT
T ss_pred cCCCee-EEEEEEEeceeccCCEEEEecCC----c-----eEEEEEEEEcccccccccccccceecCCCcceEEeeeccH
Confidence 3455 89999999999999999986532 2 25888888652 556789999999999998 344
Q ss_pred ccccccce-eeecCCC
Q 003804 450 DQYITKNA-TLTNEKE 464 (794)
Q Consensus 450 ~~~~~~tg-Tl~~~~~ 464 (794)
+++ ..| +|+++..
T Consensus 484 ~di--~rGdvl~~~~~ 497 (611)
T 3izq_1 484 EDI--QNGDLAASVDY 497 (611)
T ss_dssp TSC--CTTCEEBCSTT
T ss_pred hhC--cceEEccCCCC
Confidence 444 566 8887543
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.93 E-value=1.1e-24 Score=244.21 Aligned_cols=133 Identities=23% Similarity=0.285 Sum_probs=97.4
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc-
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE- 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~- 84 (794)
.+.++|++ +||+|||||||+++|. | ...|....|+++|+|++.....+.+....... ++...
T Consensus 6 ~~~~~I~i---iG~~d~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~-~y~~~~ 68 (408)
T 1s0u_A 6 QAEVNIGM---VGHVDHGKTSLTKALT-----------G--VWTDRHSEELRRGISIRLGYADCEIRKCPQCG-TYTTKP 68 (408)
T ss_dssp CCCEEEEE---ESCTTSSHHHHHHHHH-----------S--CCCCC-------CCCCCCEEEEEEEEECTTTC-CEESSS
T ss_pred CCceEEEE---EcCCCCCHHHHHHHHh-----------C--CccccCcccccCCcEEEecccccccccccccc-cccccc
Confidence 34689999 9999999999999993 3 24567788999999998876655542100000 00000
Q ss_pred -cC--C----CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-chhHHHHHHHHHhcCC-ccEEEEecCccc
Q 003804 85 -RQ--G----NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 155 (794)
Q Consensus 85 -~~--~----~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-~~qt~~~~~~~~~~~~-~~iv~iNKiD~~ 155 (794)
.. + ..+.++|||||||.+|..++.++++.+|++|+|||+.+|. ..||.+++..+...++ |+++++||+|+.
T Consensus 69 ~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 69 RCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp BCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 00 1 1278999999999999999999999999999999999998 8999999988887887 567999999997
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.92 E-value=1e-26 Score=263.68 Aligned_cols=301 Identities=20% Similarity=0.252 Sum_probs=199.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+..+|++ +||+|||||||+++|+...- . .+ ..+|+|+......+.|.
T Consensus 3 R~~~V~I---vGhvd~GKTTLl~~L~~~~v--~---~~-----------e~~GIT~~i~~~~v~~~-------------- 49 (501)
T 1zo1_I 3 RAPVVTI---MGHVDHGKTSLLEYIRSTKV--A---SG-----------EAGGITQHIGAYHVETE-------------- 49 (501)
T ss_dssp CCCCEEE---EESTTSSSHHHHHHHHHHHH--S---BT-----------TBCCCCCCSSCCCCCTT--------------
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHcCCC--c---cc-----------cCCCeeEeEEEEEEEEC--------------
Confidence 4568888 99999999999999964321 0 11 13678888776555543
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
+..++|||||||.+|...+.++++.+|++|+|||+.+|+.+||.++|..+...++|+++++||+|+. ++++++
T Consensus 50 --~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~----~~~~~~- 122 (501)
T 1zo1_I 50 --NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKP----EADPDR- 122 (501)
T ss_dssp --SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSS----TTCCCC-
T ss_pred --CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEecccc----ccCHHH-
Confidence 6789999999999999999999999999999999999999999999999999999999999999998 554321
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeecc----CceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhccccc
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPE----KGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~ 242 (794)
+...+..+ + +.|. ..++...|+..|++
T Consensus 123 ----------v~~~l~~~-----~---~~~~~~~~~~~~v~vSAktG~g------------------------------- 153 (501)
T 1zo1_I 123 ----------VKNELSQY-----G---ILPEEWGGESQFVHVSAKAGTG------------------------------- 153 (501)
T ss_dssp ----------TTCCCCCC-----C---CCTTCCSSSCEEEECCTTTCTT-------------------------------
T ss_pred ----------HHHHHHHh-----h---hhHHHhCCCccEEEEeeeeccC-------------------------------
Confidence 11111000 0 0000 01222233322211
Q ss_pred CCCCCceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchH
Q 003804 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASS 322 (794)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~ 322 (794)
+ .
T Consensus 154 ----------------------------------------------------I--------------------------~ 155 (501)
T 1zo1_I 154 ----------------------------------------------------I--------------------------D 155 (501)
T ss_dssp ----------------------------------------------------C--------------------------T
T ss_pred ----------------------------------------------------c--------------------------c
Confidence 0 1
Q ss_pred HHHHHHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEE
Q 003804 323 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 402 (794)
Q Consensus 323 ~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~ 402 (794)
.|++.+......+. ...+++.|+.+.|++.+.+++.|. ++++||++|+|+.||.|.
T Consensus 156 eLle~I~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~d~g~G~-v~~~~V~~Gtlk~Gd~v~ 211 (501)
T 1zo1_I 156 ELLDAILLQAEVLE-----------------------LKAVRKGMASGAVIESFLDKGRGP-VATVLVREGTLHKGDIVL 211 (501)
T ss_dssp THHHHTTTTCCCST-----------------------TTSCCCSBCEEEEEEEEECSSSSE-EEEEEEEESBCCTTCEEE
T ss_pred hhhhhhhhhhhhhc-----------------------cccccccccccceEEEEEeCCcEE-EEEEEEEeeEEecCCEEE
Confidence 12222221110000 012356788999999999888887 999999999999999998
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCC-Ccc------------
Q 003804 403 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV-DAH------------ 468 (794)
Q Consensus 403 v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~~-~~~------------ 468 (794)
+.+ .. .+|..| .+..-.++++|.||+.+.+.|+++. ...| +++...+. .+.
T Consensus 212 ~g~------~~-----~kVr~i---~~~~g~~v~~a~~g~~V~i~gl~~~-~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~ 276 (501)
T 1zo1_I 212 CGF------EY-----GRVRAM---RNELGQEVLEAGPSIPVEILGLSGV-PAAGDEVTVVRDEKKAREVALYRQGKFRE 276 (501)
T ss_dssp EEB------SS-----CEEEEE---CCTTTTSEEEECCSSCSSSEEECSC-CCTTEEEEEECSSCTTBCSSCBTTCCCCS
T ss_pred Ecc------ce-----eEEEEE---EecCCCcCcEeccCCcEEEeCCCCC-CCCCCEEEecCCHHHHHHHHHHHHHHHHH
Confidence 621 01 245444 4444467899999999999998874 2345 44322110 000
Q ss_pred ---------cccc----cccCCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCcEEEE
Q 003804 469 ---------PIRA----MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCS 513 (794)
Q Consensus 469 ---------~~~~----~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~ 513 (794)
.+.. +.....+.+.+.|.+...+..++|.++|.+|..+++.+.+.
T Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~ 334 (501)
T 1zo1_I 277 VKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKII 334 (501)
T ss_dssp HHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCC
T ss_pred HHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEE
Confidence 1111 21112456778888888888999999999888777666553
No 30
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.92 E-value=3.1e-25 Score=253.05 Aligned_cols=121 Identities=31% Similarity=0.379 Sum_probs=92.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +||+|||||||+++|+... ....+|..+.|+++|+|++.....+.+.
T Consensus 18 ~~~~I~i---iG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~-------------- 71 (482)
T 1wb1_A 18 KNINLGI---FGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLE-------------- 71 (482)
T ss_dssp EEEEEEE---EECTTSSHHHHHHHHHTTC-----------------------------CCCEEEET--------------
T ss_pred CCCEEEE---ECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEEC--------------
Confidence 4689999 9999999999999995211 1235788899999999999988887774
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.++|||||||.+|..++..+++.+|++|+|||+.+|++.||.+++..+...++|.++++||+|+.
T Consensus 72 --~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 72 --NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp --TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSS
T ss_pred --CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999997
No 31
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=1e-23 Score=235.90 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=94.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCc--eeecCChhhHhhhCcccccceEEEEeecchhhhhcccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD--VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~--~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (794)
.+.++|++ +||+|||||||+++|+....... .|. .........+..++++.......+.+.
T Consensus 6 ~~~~~I~v---vG~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 68 (403)
T 3sjy_A 6 QPEVNIGV---VGHVDHGKTTLVQAITGIWTSKK---LGYAETNIGVCESCKKPEAYVTEPSCKSCGSD----------- 68 (403)
T ss_dssp CCCCEEEE---ECSTTSSHHHHHHHHHSCCCCSS---SEEEEEEEEECTTSCTTTTEESSSCCGGGTCC-----------
T ss_pred CCCcEEEE---ECCCCCCHHHHHHHHhCcccccc---cCccccceeeccccccccceeccccccccccc-----------
Confidence 35689999 99999999999999954211110 111 111111223334555544332211111
Q ss_pred ccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-chhHHHHHHHHHhcCC-ccEEEEecCccc
Q 003804 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 155 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-~~qt~~~~~~~~~~~~-~~iv~iNKiD~~ 155 (794)
........++|||||||.+|..++..+++.+|++|+|||+.+|. ..||++++..+...++ |.++++||+|+.
T Consensus 69 ~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 00112378999999999999999999999999999999999998 8999999998888887 677999999997
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.91 E-value=2.3e-25 Score=254.79 Aligned_cols=257 Identities=21% Similarity=0.261 Sum_probs=175.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+..+|++ +||+|||||||+++|....-. .+..+|+|.......+.+.
T Consensus 3 r~pkV~I---vG~~~vGKTSLl~~L~~~~~~----------------~~~~~giT~~i~~~~v~~~-------------- 49 (537)
T 3izy_P 3 RSPVVTI---MGHVDHGKTTLLDKLRKTQVA----------------AMEAGGITQHIGAFLVSLP-------------- 49 (537)
T ss_dssp CCCBCEE---EESTTTTHHHHHHHHHHHHHH----------------HSSSCCBCCCTTSCCBCSS--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCcc----------------cccCCceeEEEeEEEEEeC--------------
Confidence 3567888 999999999999999643211 1123466776665544442
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchhccCCCHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~ 166 (794)
++..++|||||||.+|...+.++++.+|++|+|||+.+|+.+||.++|..+...++|+++++||+|+. .++++.+
T Consensus 50 -~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~----~~~~~~v 124 (537)
T 3izy_P 50 -SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKA----EADPEKV 124 (537)
T ss_dssp -CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGT----TTSCCSS
T ss_pred -CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEeccccc----ccchHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999998 5543322
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCceeeccCceeeeccCccceeeehhhHHHHHhhhcCCChHhHHHHhhcccccCCCC
Q 003804 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~id~~~l~~~~wg~~~~~~~~ 246 (794)
.+.+ .........|. + ..++...|+..|++.
T Consensus 125 ~~~l----~~~~~~~e~~~----~-------~~~iv~vSAktG~GI---------------------------------- 155 (537)
T 3izy_P 125 KKEL----LAYDVVCEDYG----G-------DVQAVHVSALTGENM---------------------------------- 155 (537)
T ss_dssp SSHH----HHTTSCCCCSS----S-------SEEECCCCSSSSCSS----------------------------------
T ss_pred HHHH----HhhhhhHHhcC----C-------CceEEEEECCCCCCc----------------------------------
Confidence 1111 11110000000 0 002222333222210
Q ss_pred CceeecCCCCCcchhhHhHHhhchHHHHHHHHhccChhhHHHHHhhcCCcCCHHHHHHhHHHHHHHHHhccccchHHHHH
Q 003804 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (794)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~p~~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (794)
..|++
T Consensus 156 ---------------------------------------------------------------------------~eLle 160 (537)
T 3izy_P 156 ---------------------------------------------------------------------------MALAE 160 (537)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------hhHHH
Confidence 11233
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCC
Q 003804 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (794)
Q Consensus 327 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 406 (794)
.+..+++.+. ...++++|+.+.|++...+++.|. ++.+||++|+|++||.+. .+
T Consensus 161 ~I~~l~~~~~-----------------------~~~~~~~~~~~~V~e~~~~~g~G~-V~~g~V~~G~l~~Gd~v~-~g- 214 (537)
T 3izy_P 161 ATIALAEMLE-----------------------LKADPTGAVEGTVIESFTDKGRGP-VTTAIIQRGTLRKGSILV-AG- 214 (537)
T ss_dssp HHHHHHTTCC-----------------------CCCCSSSSEEEEEEEECCCTTCCC-CEEEEEEEECCSSEEEEC-CS-
T ss_pred HHHHhhhccc-----------------------ccCCCCCCcceeEEEEEEeCCCce-EEEEEEecCEEEcCCEEE-eC-
Confidence 3333222210 012456899999999999999887 999999999999999985 22
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCC
Q 003804 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE 464 (794)
Q Consensus 407 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~gl~~~~~~tg-Tl~~~~~ 464 (794)
.. ..+|..|+...| .++++|.|||+|+|.|+++. ...| +|+...+
T Consensus 215 -----~~----~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~-~~~Gd~l~~~~~ 260 (537)
T 3izy_P 215 -----KS----WAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDL-PSAGDEILEVES 260 (537)
T ss_dssp -----SC----CEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEE-EEEESSCCSCCS
T ss_pred -----Cc----eEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCC-CCCCCEEEecCC
Confidence 11 147777665444 67999999999999999975 3456 7776543
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.56 E-value=2.2e-14 Score=153.51 Aligned_cols=116 Identities=24% Similarity=0.177 Sum_probs=89.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.++.+|++ +|++|+|||||+++|+.....+.....+ .|.......+.+
T Consensus 5 ~~~g~V~i---vG~~nvGKSTLln~l~g~~~~ivs~~~~---------------tTr~~i~~i~~~-------------- 52 (301)
T 1wf3_A 5 TYSGFVAI---VGKPNVGKSTLLNNLLGVKVAPISPRPQ---------------TTRKRLRGILTE-------------- 52 (301)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHTSCCSCCCSSSC---------------CCCSCEEEEEEE--------------
T ss_pred ccCCEEEE---ECCCCCCHHHHHHHHhCCceeeecCCCC---------------ceeEEEEEEEEe--------------
Confidence 45678999 9999999999999997544333221122 122211112223
Q ss_pred CCCceEEEEEcCCCccc--------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc--CCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~d--------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~--~~~~iv~iNKiD~~ 155 (794)
++..++||||||+.+ |...+..+++.+|++++|+|+.++...++..+++++... ++|.++|+||+|+.
T Consensus 53 --~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 53 --GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp --TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred --CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 378999999999987 778888999999999999999999888888888888776 89999999999997
No 34
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.53 E-value=8.6e-15 Score=143.12 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=92.0
Q ss_pred cceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc
Q 003804 4 YCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (794)
Q Consensus 4 ~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (794)
...+.++|++ +|+.|+|||||+++|+... ... ....++|.......+.+.
T Consensus 4 ~~~~~~~i~v---~G~~~~GKssl~~~l~~~~--~~~--------------~~~~~~~~~~~~~~~~~~----------- 53 (178)
T 2lkc_A 4 MVERPPVVTI---MGHVDHGKTTLLDAIRHSK--VTE--------------QEAGGITQHIGAYQVTVN----------- 53 (178)
T ss_dssp TCCCCCEEEE---ESCTTTTHHHHHHHHHTTC--SSC--------------SSCCSSSTTCCCCEEEET-----------
T ss_pred cCCCCCEEEE---ECCCCCCHHHHHHHHhCCc--ccc--------------CCCCceeEeeeEEEEEeC-----------
Confidence 4456789999 9999999999999995321 111 001233444444444443
Q ss_pred ccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.+|.......++.+|++++|+|+.++...++...+..+...++|.++++||+|+.
T Consensus 54 -----~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 54 -----DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKP 120 (178)
T ss_dssp -----TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSS
T ss_pred -----CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCC
Confidence 6789999999999998888888899999999999999988888888888877899999999999998
No 35
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.51 E-value=8.9e-14 Score=145.58 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=86.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+.....+... + .+++|.......+.|.
T Consensus 21 ~~~~I~l---vG~~g~GKStl~n~l~~~~~~~~~~--~------------~~~~t~~~~~~~~~~~-------------- 69 (260)
T 2xtp_A 21 SELRIIL---VGKTGTGKSAAGNSILRKQAFESKL--G------------SQTLTKTCSKSQGSWG-------------- 69 (260)
T ss_dssp CCEEEEE---EECTTSCHHHHHHHHHTSCCSCCCT--T------------SCCCCCSCEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHhCCCCcccCC--C------------CCceeeeeEEEEEEeC--------------
Confidence 4689999 9999999999999997655433221 1 1224555555555664
Q ss_pred CCceEEEEEcCCCccchH-----------HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc-----CCccEEEEe
Q 003804 87 GNEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVN 150 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~-----------~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~-----~~~~iv~iN 150 (794)
++.++||||||+.++. ..+..+++.+|++|+|+|+.. +..+...+|+.+.+. +.|+++++|
T Consensus 70 --~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~ 146 (260)
T 2xtp_A 70 --NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFT 146 (260)
T ss_dssp --TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred --CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEE
Confidence 7899999999998863 223347788999999999985 777888888877665 678888888
Q ss_pred -cCccc
Q 003804 151 -KMDRC 155 (794)
Q Consensus 151 -KiD~~ 155 (794)
|+|+.
T Consensus 147 nK~Dl~ 152 (260)
T 2xtp_A 147 HKEDLN 152 (260)
T ss_dssp CGGGGT
T ss_pred cccccC
Confidence 99997
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.51 E-value=1e-13 Score=149.07 Aligned_cols=117 Identities=22% Similarity=0.208 Sum_probs=88.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.-.|++ +|++|+|||||+++|+...-.+.... .+.|.......+.+.
T Consensus 8 ~~~g~v~i---vG~~nvGKSTLin~l~g~~~~i~s~~---------------~~tT~~~~~~~~~~~------------- 56 (308)
T 3iev_A 8 MKVGYVAI---VGKPNVGKSTLLNNLLGTKVSIISPK---------------AGTTRMRVLGVKNIP------------- 56 (308)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHTSCCSCCCSS---------------SCCCCSCEEEEEEET-------------
T ss_pred CCCCEEEE---ECCCCCcHHHHHHHHhCCCccccCCC---------------CCceeeEEEEEEecC-------------
Confidence 45678999 99999999999999975433222211 123333332222231
Q ss_pred CCCceEEEEEcCCCccchH----------HHHHHhhhccCceEEEEeCCCCcchhHHHH-HHHHHhcCCccEEEEecCcc
Q 003804 86 QGNEYLINLIDSPGHVDFS----------SEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALGERIRPVLTVNKMDR 154 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~----------~e~~~~l~~~D~ailvvda~~gv~~qt~~~-~~~~~~~~~~~iv~iNKiD~ 154 (794)
.++.++||||||+.++. ..+..+++.+|++++|+|+.++...++..+ +..+...++|.++|+||+|+
T Consensus 57 --~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl 134 (308)
T 3iev_A 57 --NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDK 134 (308)
T ss_dssp --TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGG
T ss_pred --CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccC
Confidence 27899999999997644 677889999999999999999999999988 56667778999999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 135 ~ 135 (308)
T 3iev_A 135 I 135 (308)
T ss_dssp S
T ss_pred C
Confidence 6
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.51 E-value=3.1e-14 Score=160.60 Aligned_cols=115 Identities=24% Similarity=0.338 Sum_probs=86.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++|+|||||+++|+.....+.. ...|+|.+.....+.+.
T Consensus 174 ~~~ki~l---vG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~-------------- 221 (436)
T 2hjg_A 174 EVIQFCL---IGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYN-------------- 221 (436)
T ss_dssp TCEEEEE---ECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEEEET--------------
T ss_pred cCcEEEE---EcCCCCCHHHHHHHHhCCCceeec---------------CCCCceeeeeEEEEEEC--------------
Confidence 4589999 999999999999999643322111 13456777666666664
Q ss_pred CCceEEEEEcCCCccc----------hHHH-HHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVD----------FSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d----------f~~e-~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..++||||||+.+ |... ...+++.+|++|+|+|+.+|...|+..++..+...++|+++++||+|+.
T Consensus 222 --~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 222 --QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp --TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred --CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 67899999999843 4332 3468889999999999999999999988888888999999999999997
No 38
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.49 E-value=4.9e-14 Score=150.98 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=85.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+..+|+| +||+|+|||||+++|+...-.+..... +.|.......+.+
T Consensus 6 ~r~~~VaI---vG~~nvGKSTLln~L~g~~~~i~s~~~---------------~tTr~~~~gi~~~-------------- 53 (301)
T 1ega_A 6 SYCGFIAI---VGRPNVGKSTLLNKLLGQKISITSRKA---------------QTTRHRIVGIHTE-------------- 53 (301)
T ss_dssp CEEEEEEE---ECSSSSSHHHHHHHHHTCSEEECCCCS---------------SCCSSCEEEEEEE--------------
T ss_pred ccCCEEEE---ECCCCCCHHHHHHHHHCCCccccCCCC---------------CcceeeEEEEEEE--------------
Confidence 45668999 999999999999999754322111111 1222111112333
Q ss_pred CCCceEEEEEcCCCcc---------chHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHV---------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~---------df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++..++++||||+. +|...+..+++.+|++++|+|+.+ +..+++.+++.+...+.|.++++||+|+.
T Consensus 54 --~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 54 --GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp --TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred --CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 37899999999998 344456678899999999999988 99999989988887889999999999997
No 39
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.46 E-value=3.5e-13 Score=140.15 Aligned_cols=123 Identities=17% Similarity=0.129 Sum_probs=89.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++|+|||||+++|+.....+... ...+.|.......+.+.
T Consensus 20 ~~l~I~l---vG~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~-------------- 68 (247)
T 3lxw_A 20 STRRLIL---VGRTGAGKSATGNSILGQRRFFSRL--------------GATSVTRACTTGSRRWD-------------- 68 (247)
T ss_dssp CEEEEEE---ESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCcHHHHHHHHhCCCCccccC--------------CCCCccccEEEEEEEEC--------------
Confidence 5689999 9999999999999997544333221 01234555555555553
Q ss_pred CCceEEEEEcCCCc--------cchHHHHHHhh----hccCceEEEEeCCCCcchhHHHHHHHHHhc------CCccEEE
Q 003804 87 GNEYLINLIDSPGH--------VDFSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE------RIRPVLT 148 (794)
Q Consensus 87 ~~~~~inlIDTPGh--------~df~~e~~~~l----~~~D~ailvvda~~gv~~qt~~~~~~~~~~------~~~~iv~ 148 (794)
+..++||||||. .+|..++.+++ +.+|++|+|+|+.. ....+..+++.+.+. +.|+|+|
T Consensus 69 --~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv 145 (247)
T 3lxw_A 69 --KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVF 145 (247)
T ss_dssp --TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred --CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEE
Confidence 789999999997 56777787777 89999999999974 666677777766653 6789999
Q ss_pred EecCccchhccCCCHHHHH
Q 003804 149 VNKMDRCFLELQVDGEEAY 167 (794)
Q Consensus 149 iNKiD~~~~~~~~~~~~~~ 167 (794)
.||+|+. +.+.++..
T Consensus 146 ~nK~Dl~----~~~~~~~l 160 (247)
T 3lxw_A 146 TRKEDLA----GGSLHDYV 160 (247)
T ss_dssp ECGGGGT----TCCHHHHH
T ss_pred EchHhcC----CCCHHHHH
Confidence 9999997 66655443
No 40
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.46 E-value=1.7e-13 Score=155.41 Aligned_cols=115 Identities=24% Similarity=0.344 Sum_probs=89.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++|+|||||+++|+.....+... ..|+|.+.....+.+.
T Consensus 194 ~~~ki~i---vG~~~vGKSslin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~-------------- 241 (456)
T 4dcu_A 194 EVIQFCL---IGRPNVGKSSLVNAMLGEERVIVSN---------------VAGTTRDAVDTSFTYN-------------- 241 (456)
T ss_dssp TCEEEEE---ECSTTSSHHHHHHHHHTSTTEEECC---------------------CTTSEEEEET--------------
T ss_pred ccceeEE---ecCCCCCHHHHHHHHhCCCccccCC---------------CCCeEEEEEEEEEEEC--------------
Confidence 4589999 9999999999999996433222111 2346666666666664
Q ss_pred CCceEEEEEcCCC----------ccchHHH-HHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPG----------HVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPG----------h~df~~e-~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..++|||||| +..|... ...+++.+|++|+|+|+.++...|+..++..+...++|+++|+||+|+.
T Consensus 242 --~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 242 --QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp --TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred --CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 67999999999 5566654 3458899999999999999999999999999999999999999999987
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.45 E-value=1.7e-13 Score=139.46 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=81.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCC-cccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~-i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
..++|++ +|+.|+|||||+++|+..... .... ..|.|.......+.+
T Consensus 28 ~~~~i~v---~G~~~~GKSslin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~~~-------------- 75 (223)
T 4dhe_A 28 VQPEIAF---AGRSNAGKSTAINVLCNQKRLAFASK---------------TPGRTQHINYFSVGP-------------- 75 (223)
T ss_dssp CSCEEEE---EESCHHHHHHHHHHHTTCSSSSCTTC---------------CCCSCCCEEEEEESC--------------
T ss_pred CCCEEEE---EcCCCCCHHHHHHHHhCCCcceeecC---------------CCCcccceEEEEecC--------------
Confidence 3578999 999999999999999543211 1110 123344333222221
Q ss_pred CCCceEEEEEcCCCccc----------hHH---HHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecC
Q 003804 86 QGNEYLINLIDSPGHVD----------FSS---EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~d----------f~~---e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKi 152 (794)
.++..++||||||+.+ |.. ...+....+|++++|+|+.++.......+++.+...++|.++|+||+
T Consensus 76 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~ 154 (223)
T 4dhe_A 76 -AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKC 154 (223)
T ss_dssp -TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECG
T ss_pred -CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecc
Confidence 2367899999999733 233 33334445888999999999988888888888888899999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 155 Dl~ 157 (223)
T 4dhe_A 155 DKL 157 (223)
T ss_dssp GGS
T ss_pred ccC
Confidence 987
No 42
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.43 E-value=9e-14 Score=155.05 Aligned_cols=114 Identities=21% Similarity=0.197 Sum_probs=87.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+.... ...+..+|+|++.....+.+.
T Consensus 33 ~~~kI~I---vG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~-------------- 80 (423)
T 3qq5_A 33 FRRYIVV---AGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELH-------------- 80 (423)
T ss_dssp CCEEEEE---ECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEET--------------
T ss_pred CCEEEEE---ECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEEC--------------
Confidence 4689999 99999999999999832211 122345678888887777774
Q ss_pred CCceEEEEEcCCCccchHH-------HHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~-------e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
....++|||||||.+|.. .+..+++.+|++|+|+|+ +...++..++..+.+.++|.++|+||+|+.
T Consensus 81 -~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 81 -PIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp -TTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred -CCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 234899999999998753 356788899999999999 888999999999999999999999999998
No 43
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.42 E-value=7.4e-13 Score=126.89 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=82.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+|++ +|+.|+|||||+++|+....... +...+.|.......+.+.
T Consensus 2 ~ki~v---~G~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~---------------- 47 (161)
T 2dyk_A 2 HKVVI---VGRPNVGKSSLFNRLLKKRSAVV---------------ADVPGVTRDLKEGVVETD---------------- 47 (161)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEET----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCCeeec---------------cCCCCceecceEEEEEeC----------------
Confidence 47888 99999999999999964331111 111233444443444442
Q ss_pred ceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+.+ +.......++.+|++++|+|+..+.......+++.+...++|.++++||+|+.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 67899999999987 45567778899999999999999887777777777777889999999999987
No 44
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.42 E-value=5.8e-13 Score=130.26 Aligned_cols=123 Identities=20% Similarity=0.145 Sum_probs=72.1
Q ss_pred CCccceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 1 ~~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
|++...+.++|++ +|+.|+|||||+++|+...-.... ...++.......+.+.
T Consensus 1 Ms~~~~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~-------- 53 (182)
T 1ky3_A 1 MSSRKKNILKVII---LGDSGVGKTSLMHRYVNDKYSQQY----------------KATIGADFLTKEVTVD-------- 53 (182)
T ss_dssp ------CEEEEEE---ECCTTSSHHHHHHHHHHSCCCTTC-------------------CCCSCEEEEECCS--------
T ss_pred CCcccCceEEEEE---ECCCCCCHHHHHHHHHhCcCCccc----------------CCccceEEEEEEEEEc--------
Confidence 6665667899999 999999999999999643211000 0111122222222221
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHh-------cCCccEEEEecC
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG-------ERIRPVLTVNKM 152 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~-------~~~~~iv~iNKi 152 (794)
++....+.+|||||+.+|.......++.+|++|+|+|+.+....+....|. .+.. .++|+++++||+
T Consensus 54 -----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 54 -----GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp -----SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred -----CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 124578999999999999988889999999999999999876554444332 2221 577999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 129 Dl~ 131 (182)
T 1ky3_A 129 DAE 131 (182)
T ss_dssp TSC
T ss_pred ccc
Confidence 985
No 45
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.38 E-value=4.3e-13 Score=131.06 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=83.1
Q ss_pred CCccceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 1 ~~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
|+......++|++ +|+.|+|||||+++|+ +... ..+....++.......+.+.
T Consensus 2 m~~~~~~~~~i~v---~G~~~~GKssl~~~l~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~-------- 54 (181)
T 3tw8_B 2 MARDYDHLFKLLI---IGDSGVGKSSLLLRFA-----------DNTF-----SGSYITTIGVDFKIRTVEIN-------- 54 (181)
T ss_dssp ----CCEEEEEEE---ECCTTSCHHHHHHHHC-----------SCC--------CCTTTBSEEEEEEEEEET--------
T ss_pred CccccCcceEEEE---ECCCCCCHHHHHHHHh-----------cCCC-----CCccCCCceeEEEEEEEEEC--------
Confidence 4444567799999 9999999999999993 2100 01111223333333333332
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh--cCCccEEEEecCccc
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
+..+.+++|||||+.+|.......++.+|++|+|+|+.++...+....| ..+.. .++|.++|+||+|+.
T Consensus 55 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 55 ------GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp ------TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred ------CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 2347899999999999988888899999999999999987555554433 23322 357889999999986
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.38 E-value=1.2e-12 Score=128.76 Aligned_cols=122 Identities=20% Similarity=0.144 Sum_probs=84.1
Q ss_pred CCccceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 1 ~~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
|+.-..+.++|++ +|+.|+|||||+++|+...-.... ...++.......+.+
T Consensus 3 m~~~~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------- 54 (186)
T 2bme_A 3 MSETYDFLFKFLV---IGNAGTGKSCLLHQFIEKKFKDDS----------------NHTIGVEFGSKIINV--------- 54 (186)
T ss_dssp -CCCCSEEEEEEE---EESTTSSHHHHHHHHHHSSCCTTC----------------CCCSEEEEEEEEEEE---------
T ss_pred cccccccceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEE---------
Confidence 4433356799999 999999999999999643221110 011122222222222
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHH---HhcCCccEEEEecCccc
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~---~~~~~~~iv~iNKiD~~ 155 (794)
+++...+.||||||+.+|.......++.+|++|+|+|+.+....+....| ..+ ...++|+++++||+|+.
T Consensus 55 -----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 55 -----GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp -----TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -----CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 22347899999999999999999999999999999999986655544444 222 23577899999999986
No 47
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.38 E-value=7.4e-13 Score=132.83 Aligned_cols=122 Identities=20% Similarity=0.129 Sum_probs=81.4
Q ss_pred CCccceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 1 ~~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
|++.....++|++ +|+.|+|||||+++|+...-.... ...++.......+.+
T Consensus 1 M~~~~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------- 52 (207)
T 1vg8_A 1 MTSRKKVLLKVII---LGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVMV--------- 52 (207)
T ss_dssp ------CEEEEEE---ECCTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEES---------
T ss_pred CCcccCcceEEEE---ECcCCCCHHHHHHHHHcCCCCCCC----------------CCcccceEEEEEEEE---------
Confidence 6665667899999 999999999999999653321110 001122222222222
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HHh-------cCCccEEEEecC
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG-------ERIRPVLTVNKM 152 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~~-------~~~~~iv~iNKi 152 (794)
++..+.+.||||||+.+|.......++.+|++|+|+|+.++...+....|.. +.. .++|+++++||+
T Consensus 53 -----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (207)
T 1vg8_A 53 -----DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127 (207)
T ss_dssp -----SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred -----CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 2345789999999999998888888999999999999998765544443322 221 477999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 128 Dl~ 130 (207)
T 1vg8_A 128 DLE 130 (207)
T ss_dssp TSS
T ss_pred CCc
Confidence 986
No 48
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.37 E-value=1.6e-12 Score=129.41 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=82.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
....+|++ +|+.|+|||||+++|+...-.. .+ ...|+......+.+
T Consensus 15 ~~~~ki~v---~G~~~~GKSsl~~~l~~~~~~~----------~~-------~~~t~~~~~~~~~~-------------- 60 (199)
T 4bas_A 15 KTKLQVVM---CGLDNSGKTTIINQVKPAQSSS----------KH-------ITATVGYNVETFEK-------------- 60 (199)
T ss_dssp -CEEEEEE---ECCTTSCHHHHHHHHSCCC--------------C-------CCCCSSEEEEEEEE--------------
T ss_pred CCCcEEEE---ECCCCCCHHHHHHHHhcCCCcc----------cc-------cccccceeEEEEEe--------------
Confidence 35689999 9999999999999993211000 01 11244433333333
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHhc-----------CCccEEEEecCc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE-----------RIRPVLTVNKMD 153 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~~-----------~~~~iv~iNKiD 153 (794)
.++.++||||||+.+|.......++.+|++|+|+|+.++...+.. ..|..+... ++|+++|+||+|
T Consensus 61 --~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D 138 (199)
T 4bas_A 61 --GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD 138 (199)
T ss_dssp --TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred --CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence 478999999999999998888999999999999999987654443 334444443 889999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 139 l~ 140 (199)
T 4bas_A 139 AA 140 (199)
T ss_dssp ST
T ss_pred CC
Confidence 97
No 49
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.37 E-value=4e-12 Score=122.25 Aligned_cols=109 Identities=20% Similarity=0.145 Sum_probs=79.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|+.|+|||||+++|+...- .. . ..|+......+.+ +
T Consensus 1 ~ki~~---~G~~~~GKssl~~~l~~~~~--~~----------~-------~~t~~~~~~~~~~----------------~ 42 (164)
T 1r8s_A 1 MRILM---VGLDAAGKTTILYKLKLGEI--VT----------T-------IPTIGFNVETVEY----------------K 42 (164)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHHHHCS--SC----------C-------CCCSSCCEEEEEC----------------S
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCCc--Cc----------c-------cCcCceeEEEEEE----------------C
Confidence 47888 99999999999999964321 00 0 1133322233333 3
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++.+++|||||+.+|.......++.+|++++|+|+.+.-..... ..+..+.. .+.|+++++||+|+.
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 78999999999999998888899999999999999976443332 23333333 378999999999997
No 50
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.36 E-value=3.3e-12 Score=124.64 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=81.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...- ..+....++++.....+.+.
T Consensus 4 ~~~~ki~v---~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~------------- 51 (178)
T 2hxs_A 4 MRQLKIVV---LGDGASGKTSLTTCFAQETF----------------GKQYKQTIGLDFFLRRITLP------------- 51 (178)
T ss_dssp CCEEEEEE---ECCTTSSHHHHHHHHHGGGT----------------THHHHHTTTSSEEEEEEEET-------------
T ss_pred CceEEEEE---ECcCCCCHHHHHHHHHhCcC----------------CCCCCCceeEEEEEEEEEeC-------------
Confidence 35689999 99999999999999953210 01111222222333333332
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh-----cCCc-cEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIR-PVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~-----~~~~-~iv~iNKiD~~ 155 (794)
++....+++|||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .+.| +++++||+|+.
T Consensus 52 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 52 GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred CCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 11247899999999999998889999999999999999987554444333 23322 2567 57899999986
No 51
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.36 E-value=6.3e-12 Score=122.47 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=81.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+........ .. ..+.+.. ...+.+ +
T Consensus 14 ~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~--~~~~~~--------------~ 60 (179)
T 1z0f_A 14 YIFKYII---IGDMGVGKSCLLHQFTEKKFMADC--PH------------TIGVEFG--TRIIEV--------------S 60 (179)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHHSCCCSSC--TT------------SCCCCEE--EEEEEE--------------T
T ss_pred cceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceEEE--EEEEEE--------------C
Confidence 4689999 999999999999999653321110 00 0011111 112222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH---hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~---~~~~~~iv~iNKiD~~ 155 (794)
+....+.||||||+.+|.......++.+|++|+|+|+.++...+....| ..+. ..++|+++++||+|+.
T Consensus 61 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 61 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp TEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 2367899999999999999999999999999999999987555444433 2232 2577899999999985
No 52
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.36 E-value=1.2e-12 Score=129.70 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=83.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|+.|+|||||++.|........ .+... .. ..+...|+......... ...
T Consensus 12 ~~~~ki~v---vG~~~~GKssL~~~l~~~~~~~~---~~~~~-~~----~~~~~~t~~~~~~~~~~-----------~~~ 69 (198)
T 3t1o_A 12 EINFKIVY---YGPGLSGKTTNLKWIYSKVPEGR---KGEMV-SL----ATEDERTLFFDFLPLDI-----------GEV 69 (198)
T ss_dssp EEEEEEEE---ECSTTSSHHHHHHHHHHTSCGGG---BCCCE-EE----ECSSCEEEEEEECCSSC-----------CCS
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHhhccccc---ccccc-cc----ccccccceeeeeccccc-----------ccc
Confidence 45789999 99999999999965522111000 00000 00 00001122111110000 023
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh---------cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---------ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~---------~~~~~iv~iNKiD~~ 155 (794)
+++.+.++||||||+.+|.......++.+|++|+|+|+.++...+....+..+.. .++|+++|+||+|+.
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 70 KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 4457899999999999999999999999999999999998776666655544432 578999999999987
No 53
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=128.77 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=81.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+...- ..+....++.......+.+.
T Consensus 25 ~~~ki~v---vG~~~~GKSsLi~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~-------------- 71 (192)
T 2il1_A 25 FKLQVII---IGSRGVGKTSLMERFTDDTF----------------CEACKSTVGVDFKIKTVELR-------------- 71 (192)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHhcCCC----------------CcCCCCccceeEEEEEEEEC--------------
Confidence 4689999 99999999999999932110 00111122222222233332
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHH---hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~---~~~~~~iv~iNKiD~~ 155 (794)
+..+.+.||||||+.+|.......++.+|++|+|+|+.++...+....|. .+. ..++|+++|+||+|+.
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 72 GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 23578999999999999999999999999999999999876665544442 222 2467899999999986
No 54
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.36 E-value=1.7e-12 Score=125.68 Aligned_cols=112 Identities=19% Similarity=0.133 Sum_probs=82.1
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+... ... ...|+......+.+.
T Consensus 5 ~~~~~i~v---~G~~~~GKssl~~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~------------- 49 (171)
T 1upt_A 5 TREMRILI---LGLDGAGKTTILYRLQVGE--VVT-----------------TIPTIGFNVETVTYK------------- 49 (171)
T ss_dssp SSCEEEEE---ECSTTSSHHHHHHHHHHSS--CCC-----------------CCCCSSEEEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCC--CCC-----------------cCCcCccceEEEEEC-------------
Confidence 35689999 9999999999999995321 110 112333333344443
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+.+|.......++.+|++++|+|+.+.-..... ..+..+.. .++|+++++||+|+.
T Consensus 50 ---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 50 ---NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp ---TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 78999999999999988888899999999999999987544332 23333333 478999999999997
No 55
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.36 E-value=2.2e-12 Score=128.10 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=78.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+...- ... + ....|.|..... +.+
T Consensus 22 ~~~~i~v---~G~~~~GKSsli~~l~~~~~-~~~-------~------~~~~~~t~~~~~--~~~--------------- 67 (195)
T 1svi_A 22 GLPEIAL---AGRSNVGKSSFINSLINRKN-LAR-------T------SSKPGKTQTLNF--YII--------------- 67 (195)
T ss_dssp CCCEEEE---EEBTTSSHHHHHHHHHTC---------------------------CCEEE--EEE---------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCC-ccc-------c------CCCCCceeeEEE--EEE---------------
Confidence 4689999 99999999999999963210 000 0 001122332221 111
Q ss_pred CCceEEEEEcCCC----------ccchHHHHHHhhhcc---CceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCc
Q 003804 87 GNEYLINLIDSPG----------HVDFSSEVTAALRIT---DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 87 ~~~~~inlIDTPG----------h~df~~e~~~~l~~~---D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD 153 (794)
+..+++||||| +..|...+...++.+ |++++|+|+..+...+...+++.+...++|.++++||+|
T Consensus 68 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 145 (195)
T 1svi_A 68 --NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKAD 145 (195)
T ss_dssp --TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred --CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 23689999999 555555555556555 999999999999888888788888888999999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 146 l~ 147 (195)
T 1svi_A 146 KI 147 (195)
T ss_dssp GS
T ss_pred cC
Confidence 97
No 56
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.36 E-value=4.7e-12 Score=125.39 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=82.4
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...-. . ....|+......+.+
T Consensus 20 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~-------------- 64 (188)
T 1zd9_A 20 KEEMELTL---VGLQYSGKTTFVNVIASGQFN--E----------------DMIPTVGFNMRKITK-------------- 64 (188)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHHSCCC--C----------------SCCCCCSEEEEEEEE--------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHHcCCCC--C----------------ccCCCCceeEEEEEe--------------
Confidence 35789999 999999999999999642211 0 011233333333333
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+++.++||||||+.+|.......++.+|++|+|+|+.+.-..+.. ..+..+.. .++|+++|+||+|+.
T Consensus 65 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 65 --GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp --TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred --CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 378999999999999998889999999999999999876444332 23333333 578999999999997
No 57
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=3e-12 Score=123.53 Aligned_cols=116 Identities=21% Similarity=0.181 Sum_probs=80.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... ...++.......+.+ +
T Consensus 2 ~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~ 48 (170)
T 1ek0_A 2 TSIKLVL---LGEAAVGKSSIVLRFVSNDFAENK----------------EPTIGAAFLTQRVTI--------------N 48 (170)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHHSCCCTTC----------------CCCSSEEEEEEEEEE--------------T
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEE--------------C
Confidence 4689999 999999999999999643211000 000111111122222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....+.+|||||+.+|.......++.+|++++|+|+.+....+....| ..+.. .++|+++++||+|+.
T Consensus 49 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 49 EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 2367899999999999999999999999999999999987554444333 23322 467888999999986
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.35 E-value=5.1e-12 Score=123.13 Aligned_cols=117 Identities=21% Similarity=0.175 Sum_probs=81.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 5 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~------------- 52 (177)
T 1wms_A 5 SSLFKVIL---LGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVD------------- 52 (177)
T ss_dssp EEEEEEEE---ECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEET-------------
T ss_pred cceeEEEE---ECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEEC-------------
Confidence 45689999 9999999999999996422110 001112222222222232
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH---h----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---G----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~---~----~~~~~iv~iNKiD~~ 155 (794)
+....+.||||||+.+|.......++.+|++++|+|+.++...+....| ..+. . .++|.++++||+|+.
T Consensus 53 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 53 -GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp -TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred -CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 2357899999999999999888999999999999999987655443333 2222 1 567999999999986
No 59
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.35 E-value=4.8e-12 Score=124.96 Aligned_cols=124 Identities=19% Similarity=0.065 Sum_probs=81.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceE---EEEeecchhhhhccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI---SLYYEMTDAALKSYR 82 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~---~~~~~~~~~~~~~~~ 82 (794)
...++|++ +|+.|+|||||+++|+...- .. ....|+..... .+.+.. .. ..
T Consensus 9 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~--~~----------------~~~~t~~~~~~~~~~~~~~~--~~---~~ 62 (195)
T 3bc1_A 9 DYLIKFLA---LGDSGVGKTSVLYQYTDGKF--NS----------------KFITTVGIDFREKRVVYRAN--GP---DG 62 (195)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCC--CC----------------SCCCCCSEEEEEEEEEECTT--SC---CC
T ss_pred ceeEEEEE---ECCCCCCHHHHHHHHhcCCC--Cc----------------CcccccceeeeeEEEEEecC--Cc---cc
Confidence 45789999 99999999999999964221 10 00112221111 111110 00 00
Q ss_pred cccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 83 ~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
.........++||||||+.+|.......++.+|++|+|+|+......+....| ..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp SSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred ccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 00011257899999999999999999999999999999999987655543333 33332 578999999999986
No 60
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.35 E-value=2.3e-12 Score=126.60 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=79.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+... .... + ..|+...... .+. .
T Consensus 16 ~~~~ki~v---~G~~~~GKSsl~~~l~~~~--~~~~---------~-------~~t~~~~~~~-~~~------------~ 61 (183)
T 3kkq_A 16 LPTYKLVV---VGDGGVGKSALTIQFFQKI--FVDD---------Y-------DPTIEDSYLK-HTE------------I 61 (183)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHSC--CCSC---------C-------CTTCCEEEEE-EEE------------E
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHhCC--CCCC---------C-------CCCccceeEE-EEE------------e
Confidence 45789999 9999999999999997431 1110 0 0122111111 111 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-----HHHHhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-----~~~~~~~~~~iv~iNKiD~~ 155 (794)
++..+.+++|||||+.+|.......++.+|++++|+|+.+....+...-| +.....++|+++++||+|+.
T Consensus 62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 23456788899999999998899999999999999999986443332222 22234678999999999986
No 61
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=3.1e-12 Score=125.04 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=74.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...-..... ...++.......+.+
T Consensus 8 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~~---------------~~t~~~~~~~~~~~~-------------- 55 (180)
T 2g6b_A 8 DVAFKVML---VGDSGVGKTCLLVRFKDGAFLAGTF---------------ISTVGIDFRNKVLDV-------------- 55 (180)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCCCCCCC---------------CCCCSCEEEEEEEEE--------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHhCCCCCCCc---------------CCceeeEEEEEEEEE--------------
Confidence 46789999 9999999999999996533211110 011122221112222
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
++..+.+++|||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++++||+|+.
T Consensus 56 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 56 DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp TTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 22356899999999999998889999999999999999986554443333 33332 578999999999986
No 62
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.35 E-value=2.2e-12 Score=126.27 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=81.7
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...-... ....++.......+.+
T Consensus 10 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~-------------- 56 (181)
T 2efe_B 10 SINAKLVL---LGDVGAGKSSLVLRFVKDQFVEF----------------QESTIGAAFFSQTLAV-------------- 56 (181)
T ss_dssp CEEEEEEE---ECCTTSCHHHHHHHHHHCCCTTT----------------SCCCSCCSEEEEEEEE--------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHHcCCCCCc----------------CCCCceeEEEEEEEEE--------------
Confidence 35689999 99999999999999964321100 0111222222222222
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHHhc---CCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALGE---RIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~~~---~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.......++.+|++|+|+|+.+....+... .+..+... ++|+++++||+|+.
T Consensus 57 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 57 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp TTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 223678999999999999998999999999999999999876544433 33444433 67889999999986
No 63
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.35 E-value=4.1e-12 Score=126.26 Aligned_cols=112 Identities=19% Similarity=0.138 Sum_probs=80.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|.... ... ...|+......+.+.
T Consensus 21 ~~~~ki~~---vG~~~vGKSsli~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~------------- 65 (190)
T 1m2o_B 21 NKHGKLLF---LGLDNAGKTTLLHMLKNDR--LAT-----------------LQPTWHPTSEELAIG------------- 65 (190)
T ss_dssp ---CEEEE---EESTTSSHHHHHHHHHHSC--CCC-----------------CCCCCSCEEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCC--CCc-----------------cccCCCCCeEEEEEC-------------
Confidence 45679999 9999999999999996422 110 112343433444453
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.+|.......++.+|++++|+|+.++...+... .+..+.. .++|.++++||+|+.
T Consensus 66 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 66 ---NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp ---TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 689999999999998887788899999999999999876544333 2333332 578999999999997
No 64
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.34 E-value=8.6e-12 Score=125.99 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=84.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+... ... ...|+......+.+.
T Consensus 5 ~~~~ki~v---vG~~~~GKTsli~~l~~~~--~~~-----------------~~~~~~~~~~~~~~~------------- 49 (214)
T 2fh5_B 5 SSQRAVLF---VGLCDSGKTLLFVRLLTGQ--YRD-----------------TQTSITDSSAIYKVN------------- 49 (214)
T ss_dssp ---CEEEE---ECSTTSSHHHHHHHHHHSC--CCC-----------------BCCCCSCEEEEEECS-------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhCCC--ccc-----------------ccCCcceeeEEEEec-------------
Confidence 45689999 9999999999999996433 111 011222222223332
Q ss_pred CCCceEEEEEcCCCccchHH-HHHHhhhccCceEEEEeCCCCcchhHH---HHHHHHH------hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTE---TVLRQAL------GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~-e~~~~l~~~D~ailvvda~~gv~~qt~---~~~~~~~------~~~~~~iv~iNKiD~~ 155 (794)
+.+++.++||||||+.+|.. .....++.+|++|+|+|+.. ...+.. ..|.... ..++|+++|+||+|+.
T Consensus 50 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 50 NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred CCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence 11267899999999999988 56667899999999999986 222222 2333221 2367999999999997
Q ss_pred hhccCC-CHHHHHHHHHHHHHH
Q 003804 156 FLELQV-DGEEAYQTFQKVIEN 176 (794)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~ 176 (794)
.. ..+...+.+++.+..
T Consensus 129 ----~~~~~~~~~~~l~~~l~~ 146 (214)
T 2fh5_B 129 ----MAKSAKLIQQQLEKELNT 146 (214)
T ss_dssp ----TCCCHHHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHHHHHHHHH
Confidence 43 455555666655553
No 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.34 E-value=8.4e-13 Score=129.72 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCccceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 1 ~~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
|+.-....++|++ +|+.|+|||||+++|+...- ..+....++.......+.+.
T Consensus 1 M~~~~~~~~ki~v---~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~-------- 53 (183)
T 2fu5_C 1 MAKTYDYLFKLLL---IGDSGVGKTCVLFRFSEDAF----------------NSTFISTIGIDFKIRTIELD-------- 53 (183)
T ss_dssp --CCCSEEEEEEE---ECCCCC--------------------------------CHHHHHCEEEEEEEEEET--------
T ss_pred CCcccCCceEEEE---ECCCCCCHHHHHHHHHhCCC----------------CCCCCCcccceeEEEEEEEC--------
Confidence 5443456799999 99999999999999952110 00111122222222233332
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+..+.++||||||+.+|.......++.+|++|+|+|+.+....+...-| ..+.. .++|+++|+||+|+.
T Consensus 54 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 54 ------GKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp ------TEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred ------CEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 2357899999999999988888889999999999999986544433323 33333 367899999999986
No 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.34 E-value=7.9e-12 Score=124.32 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=53.5
Q ss_pred eEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH-hcCCccEEEEecCcc
Q 003804 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-GERIRPVLTVNKMDR 154 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~-~~~~~~iv~iNKiD~ 154 (794)
..+.||||||+.+|.......++.+|++|+|+|+.++...+....| ..+. ..+.|+++|+||+|.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 8899999999999999999999999999999999987655554433 3333 256888999999993
No 67
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.34 E-value=1.7e-12 Score=128.97 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=82.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|+.|+|||||+++|+...-.... ...++.......+.+.
T Consensus 14 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~------------- 61 (196)
T 3tkl_A 14 DYLFKLLL---IGDSGVGKSCLLLRFADDTYTESY----------------ISTIGVDFKIRTIELD------------- 61 (196)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCCCSCC----------------CCCSSEEEEEEEEEET-------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHHcCCCCCCC----------------CCcccceEEEEEEEEC-------------
Confidence 35689999 999999999999999642211110 1122333333333332
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+..+.+.||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++++||+|+.
T Consensus 62 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 -GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp -TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred -CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 2347899999999999999999999999999999999986554443333 33322 377999999999986
No 68
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.34 E-value=2.9e-12 Score=144.53 Aligned_cols=112 Identities=24% Similarity=0.305 Sum_probs=84.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|++|+|||||+++|+.....+.. -..|+|.+.....+.|. +
T Consensus 3 ~v~i---vG~pnvGKStL~nrl~~~~~~~v~---------------~~~g~T~d~~~~~~~~~----------------~ 48 (439)
T 1mky_A 3 TVLI---VGRPNVGKSTLFNKLVKKKKAIVE---------------DEEGVTRDPVQDTVEWY----------------G 48 (439)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEET----------------T
T ss_pred EEEE---ECCCCCCHHHHHHHHhCCCCceec---------------CCCCCccceeeEEEEEC----------------C
Confidence 6888 999999999999999633222211 12356776666677775 7
Q ss_pred eEEEEEcCCCccc---------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~d---------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+.+|||||... +...+..+++.+|++|+|+|+..|.......+.+.+...++|.++++||+|+.
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 8899999999764 34567788999999999999999998888777777777899999999999976
No 69
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=6.3e-12 Score=124.50 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=81.9
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
..+.++|++ +|+.++|||||+++|+...-.... ...++.......+.+
T Consensus 12 ~~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~------------- 59 (195)
T 1x3s_A 12 VLTTLKILI---IGESGVGKSSLLLRFTDDTFDPEL----------------AATIGVDFKVKTISV------------- 59 (195)
T ss_dssp EEEEEEEEE---ECSTTSSHHHHHHHHHHSCCCTTC----------------CCCCSEEEEEEEEEE-------------
T ss_pred CCCceEEEE---ECCCCCCHHHHHHHHHcCCCCccC----------------CCccceEEEEEEEEE-------------
Confidence 346789999 999999999999999643211000 000111111112222
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.......++.+|++|+|+|+...........| ..+.. .++|+++++||+|+.
T Consensus 60 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 60 -DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp -TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred -CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 22467899999999999998899999999999999999987555444444 33333 367889999999985
No 70
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.34 E-value=2.9e-12 Score=125.15 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=81.0
Q ss_pred CCccceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhh
Q 003804 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALK 79 (794)
Q Consensus 1 ~~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~ 79 (794)
|+....+.++|++ +|+.|+|||||+++|+...- ..... .|+.... ..+.+
T Consensus 2 m~~~~~~~~~i~v---~G~~~~GKssli~~l~~~~~--~~~~~----------------~t~~~~~~~~~~~-------- 52 (181)
T 2fn4_A 2 MDPPPSETHKLVV---VGGGGVGKSALTIQFIQSYF--VSDYD----------------PTIEDSYTKICSV-------- 52 (181)
T ss_dssp --CCSSCEEEEEE---EECTTSSHHHHHHHHHHSSC--CSSCC----------------TTCCEEEEEEEEE--------
T ss_pred CCCCCCCceEEEE---ECCCCCCHHHHHHHHHhCcC--ccccC----------------CCcCceEEEEEEE--------
Confidence 4444566799999 99999999999999975421 11000 1111111 11222
Q ss_pred ccccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHH----HhcCCccEEEEecCcc
Q 003804 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQA----LGERIRPVLTVNKMDR 154 (794)
Q Consensus 80 ~~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~----~~~~~~~iv~iNKiD~ 154 (794)
++....++||||||+.+|.......++.+|++++|+|+.+........ .+..+ ...++|+++++||+|+
T Consensus 53 ------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 53 ------DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp ------TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred ------CCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 223578999999999999888888999999999999999754333222 22222 2457899999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 127 ~ 127 (181)
T 2fn4_A 127 E 127 (181)
T ss_dssp G
T ss_pred c
Confidence 6
No 71
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.33 E-value=1e-11 Score=119.31 Aligned_cols=114 Identities=23% Similarity=0.258 Sum_probs=76.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~ 85 (794)
+.++|++ +|+.|+|||||+++|+... ......+ |.... ...+.+
T Consensus 3 ~~~~i~v---~G~~~~GKssl~~~l~~~~--~~~~~~~----------------t~~~~~~~~~~~-------------- 47 (168)
T 1u8z_A 3 ALHKVIM---VGSGGVGKSALTLQFMYDE--FVEDYEP----------------TKADSYRKKVVL-------------- 47 (168)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHSC--CCSCCCT----------------TCCEEEEEEEEE--------------
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHHhCc--cCCCCCC----------------CcceEEEEEEEE--------------
Confidence 4689999 9999999999999997532 1110000 11111 111222
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH----hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~----~~~~~~iv~iNKiD~~ 155 (794)
++..+.+.+|||||+.+|.......++.+|++++|+|+.+.........| ..+. ..++|.++++||+|+.
T Consensus 48 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 22357899999999999999999999999999999999976443333222 2222 2378999999999986
No 72
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.33 E-value=4e-12 Score=127.28 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=77.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|. +.. .. ....|+......+.+.
T Consensus 23 ~~~~ki~l---vG~~~vGKSsLi~~l~-----------~~~-~~-------~~~~t~~~~~~~~~~~------------- 67 (198)
T 1f6b_A 23 KKTGKLVF---LGLDNAGKTTLLHMLK-----------DDR-LG-------QHVPTLHPTSEELTIA------------- 67 (198)
T ss_dssp TCCEEEEE---EEETTSSHHHHHHHHS-----------CC--------------CCCCCSCEEEEET-------------
T ss_pred CCCcEEEE---ECCCCCCHHHHHHHHh-----------cCC-CC-------ccCCCCCceeEEEEEC-------------
Confidence 45689999 9999999999999993 210 00 0112444444444553
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.+|.......++.+|++++|+|+.+....+... .+..+.. .++|.++|+||+|+.
T Consensus 68 ---~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 68 ---GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp ---TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred ---CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 689999999999998887778899999999999999875444332 2333332 478999999999997
No 73
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.33 E-value=3.9e-12 Score=122.69 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=80.4
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...-.... +...+.+.. ...+.+
T Consensus 4 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~--------------~~~~~~~~~--~~~~~~-------------- 50 (170)
T 1r2q_A 4 ICQFKLVL---LGESAVGKSSLVLRFVKGQFHEFQ--------------ESTIGAAFL--TQTVCL-------------- 50 (170)
T ss_dssp EEEEEEEE---ECSTTSSHHHHHHHHHHSCCCTTC--------------CCCSSEEEE--EEEEEE--------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceEEE--EEEEEE--------------
Confidence 45789999 999999999999999642211000 000111111 112222
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
++.++.+++|||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++++||+|+.
T Consensus 51 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 51 DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 22367899999999999999999999999999999999987554443333 33333 366788999999986
No 74
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.33 E-value=7.5e-12 Score=124.86 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=78.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|..|+|||||++++.. ..... ...+.+.........+.
T Consensus 18 ~~~~ki~~---vG~~~vGKTsLi~~l~~--~~~~~---------------~~~~~~~~~~~~~~~~~------------- 64 (196)
T 3llu_A 18 GSKPRILL---MGLRRSGKSSIQKVVFH--KMSPN---------------ETLFLESTNKIYKDDIS------------- 64 (196)
T ss_dssp --CCEEEE---EESTTSSHHHHHHHHHS--CCCGG---------------GGGGCCCCCSCEEEEEC-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHHh--cCCCc---------------ceeeeccccceeeeecc-------------
Confidence 35689999 99999999999997732 11000 01112222222222221
Q ss_pred CCCceEEEEEcCCCccchHHHH---HHhhhccCceEEEEeCCCCcchhHHHHHHHHH-----hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~---~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~-----~~~~~~iv~iNKiD~~ 155 (794)
+++.+.++||||||+.+|.... ...++.+|++|+|+|+.+........+...+. ..++|+++|+||+|+.
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 65 NSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp CTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 2346899999999999998777 78999999999999999873223233333332 2478999999999987
No 75
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.33 E-value=3.6e-12 Score=133.68 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=77.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|++|+|||||+++|+........ + ..+.|.......+.+.
T Consensus 35 ~~~~I~l---vG~~g~GKSSLin~l~~~~~~~~~---------~------~~~~t~~~~~~~~~~~-------------- 82 (262)
T 3def_A 35 NSMTVLV---LGKGGVGKSSTVNSLIGEQVVRVS---------P------FQAEGLRPVMVSRTMG-------------- 82 (262)
T ss_dssp CEEEEEE---EECTTSSHHHHHHHHHTSCCSCCC---------S------SCC-CCCCEEEEEEET--------------
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHhCCCCcccC---------C------CCCcceeeEEEEEEEC--------------
Confidence 5789999 999999999999999754332111 1 1234555555555553
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhh---------ccCceEEEEeCCC-CcchhHHHHHHHHHhc-C----CccEEEEec
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALR---------ITDGALVVVDCIE-GVCVQTETVLRQALGE-R----IRPVLTVNK 151 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~---------~~D~ailvvda~~-gv~~qt~~~~~~~~~~-~----~~~iv~iNK 151 (794)
+..++|||||||.+|.......++ .+|++++|+|... ........+++.+... + .|.++++||
T Consensus 83 --~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 83 --GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp --TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred --CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 789999999999887543222222 7899999988764 3333344555554432 2 378899999
Q ss_pred Cccc
Q 003804 152 MDRC 155 (794)
Q Consensus 152 iD~~ 155 (794)
+|+.
T Consensus 161 ~Dl~ 164 (262)
T 3def_A 161 AQFS 164 (262)
T ss_dssp TTCC
T ss_pred cccC
Confidence 9984
No 76
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.33 E-value=1.4e-12 Score=137.47 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=83.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|.... .. .| ...|+|+......+.|.
T Consensus 3 ~~~i~l---vG~~g~GKTTL~n~l~g~~---~~--~~-----------~~~~~t~~~~~~~~~~~--------------- 48 (271)
T 3k53_A 3 LKTVAL---VGNPNVGKTTIFNALTGLR---QH--VG-----------NWPGVTVEKKEGIMEYR--------------- 48 (271)
T ss_dssp CEEEEE---EECSSSSHHHHHHHHHTTC---EE--EE-----------ECTTSSCEEEEEEEEET---------------
T ss_pred eeEEEE---ECCCCCCHHHHHHHHhCCC---cc--cC-----------CCCCeEEEeeEEEEEEC---------------
Confidence 578999 9999999999999994211 11 11 12456777766666664
Q ss_pred CceEEEEEcCCCccchHHH------HHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcC-CccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e------~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~-~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.+|... ....+ ..+|++++|+|+..+ .+....+.++...+ +|+++++||+|+.
T Consensus 49 -~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 49 -EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp -TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred -CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 778999999999887652 22223 569999999999975 35566677777888 9999999999975
No 77
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.33 E-value=3.9e-12 Score=125.98 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=80.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+....... ....|+......+.+
T Consensus 19 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~-----------------~~~~t~~~~~~~~~~-------------- 64 (190)
T 2h57_A 19 SKEVHVLC---LGLDNSGKTTIINKLKPSNAQSQ-----------------NILPTIGFSIEKFKS-------------- 64 (190)
T ss_dssp --CEEEEE---EECTTSSHHHHHHHTSCGGGCCS-----------------SCCCCSSEEEEEEEC--------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCCCCCC-----------------CcCCccceeEEEEEE--------------
Confidence 35689999 99999999999999942211010 112344433333444
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh------cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG------ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~------~~~~~iv~iNKiD~~ 155 (794)
++..+.||||||+.+|.......++.+|++|+|+|+.+....+.. ..+..+.. .++|+++|+||+|+.
T Consensus 65 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 65 --SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp --SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred --CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 268999999999999998888999999999999999976433332 23333333 478999999999997
No 78
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.32 E-value=3.6e-12 Score=122.86 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=79.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc--cceEEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~ 84 (794)
..++|++ +|+.|+|||||+++|+... .... ...|+. .....+.+
T Consensus 4 ~~~~i~v---~G~~~~GKssl~~~l~~~~--~~~~----------------~~~t~~~~~~~~~~~~------------- 49 (168)
T 1z2a_A 4 VAIKMVV---VGNGAVGKSSMIQRYCKGI--FTKD----------------YKKTIGVDFLERQIQV------------- 49 (168)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHCC--CCCC----------------SSCCCSSSEEEEEEEE-------------
T ss_pred eeEEEEE---ECcCCCCHHHHHHHHHcCC--CCCC----------------CCCceEEEEEEEEEEE-------------
Confidence 4689999 9999999999999996421 1110 011222 11222222
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh--cCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
++....+.+|||||+.+|.......++.+|++++|+|+.+....+....| ..+.. .+.|.++++||+|+.
T Consensus 50 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 50 -NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp -TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred -CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 22357899999999999988888899999999999999986544433333 33322 478999999999986
No 79
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.32 E-value=2.2e-12 Score=129.58 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=83.5
Q ss_pred CCccceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 1 ~~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
|+.-....++|++ +|+.|+|||||+++|+...-.... ...++.......+.+.
T Consensus 1 M~~~~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~-------- 53 (206)
T 2bcg_Y 1 MNSEYDYLFKLLL---IGNSGVGKSCLLLRFSDDTYTNDY----------------ISTIGVDFKIKTVELD-------- 53 (206)
T ss_dssp --CCCSEEEEEEE---EESTTSSHHHHHHHHHHCCCCTTC----------------CCSSCCCEEEEEEEET--------
T ss_pred CCcccCcceEEEE---ECCCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------
Confidence 5543355789999 999999999999999642211000 0112222222233332
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+..+.+.||||||+.+|.......++.+|++|+|+|+......+....| ..+.. .++|.++|+||+|+.
T Consensus 54 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 54 ------GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp ------TEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ------CEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 2357899999999999988888899999999999999987655554444 33332 457889999999986
No 80
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.32 E-value=2.1e-12 Score=136.44 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=81.0
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|....- ...+ ..|+|+......+.+.
T Consensus 3 ~~~I~l---vG~~n~GKSTLin~l~g~~~----------~v~~------~~g~t~~~~~~~~~~~--------------- 48 (274)
T 3i8s_A 3 KLTIGL---IGNPNSGKTTLFNQLTGSRQ----------RVGN------WAGVTVERKEGQFSTT--------------- 48 (274)
T ss_dssp CEEEEE---EECTTSSHHHHHHHHHTTCE----------EEEE------CTTSSSEEEEEEEECS---------------
T ss_pred ccEEEE---ECCCCCCHHHHHHHHhCCCc----------ccCC------CCCeeEEEEEEEEEeC---------------
Confidence 578999 99999999999999943211 0111 2356776665555553
Q ss_pred CceEEEEEcCCCccchHH---------HHHH---hhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSS---------EVTA---ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~---------e~~~---~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..++||||||+.+|.. .+.+ ..+.+|++|+|+|+.. ......++.++...++|+++|+||+|+.
T Consensus 49 -~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 49 -DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp -SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred -CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 67899999999988762 1122 2368999999999986 2344455677777899999999999986
No 81
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.32 E-value=9.4e-12 Score=124.81 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=79.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc--cceEEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~ 84 (794)
..++|++ +|+.|+|||||+++|+... ... ....|+. .....+.+.
T Consensus 28 ~~~ki~v---vG~~~vGKSsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~------------ 74 (201)
T 2hup_A 28 FLFKLVL---VGDASVGKTCVVQRFKTGA--FSE----------------RQGSTIGVDFTMKTLEIQ------------ 74 (201)
T ss_dssp EEEEEEE---EECTTSSHHHHHHHHHHSC--C--------------------------CEEEEEEEET------------
T ss_pred cceEEEE---ECcCCCCHHHHHHHHhhCC--CCC----------------CCCCCcceEEEEEEEEEC------------
Confidence 4689999 9999999999999995322 100 0112222 222223332
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....++||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 75 --~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 75 --GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp --TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred --CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 2357899999999999999999999999999999999876544433333 33333 467899999999986
No 82
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=6.3e-12 Score=124.91 Aligned_cols=116 Identities=21% Similarity=0.138 Sum_probs=81.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... ..|+........+. .+
T Consensus 22 ~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~------------~~ 68 (192)
T 2fg5_A 22 RELKVCL---LGDTGVGKSSIVCRFVQDHFDHNI------------------SPTIGASFMTKTVP------------CG 68 (192)
T ss_dssp EEEEEEE---EECTTSSHHHHHHHHHHCCCCTTC------------------CCCSSEEEEEEEEE------------CS
T ss_pred CceEEEE---ECcCCCCHHHHHHHHhcCCCCCCc------------------CCCcceeEEEEEEE------------eC
Confidence 5789999 999999999999999643210000 01111111111111 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
.....+.||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 69 NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 3468899999999999999999999999999999999987655544434 33333 367899999999986
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.32 E-value=2.7e-12 Score=128.34 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=78.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...- ... . ....|.+... ..+.+ +
T Consensus 27 ~~~ki~v---~G~~~~GKSsli~~l~~~~~--~~~-~-----------~~t~~~~~~~--~~~~~--------------~ 73 (199)
T 2p5s_A 27 KAYKIVL---AGDAAVGKSSFLMRLCKNEF--REN-I-----------SATLGVDFQM--KTLIV--------------D 73 (199)
T ss_dssp -CEEEEE---ESSTTSSHHHHHHHHHHCCC--C----------------------CEE--EEEEE--------------T
T ss_pred CCeEEEE---ECcCCCCHHHHHHHHHhCCC--Ccc-C-----------CCCccceeEE--EEEEE--------------C
Confidence 4689999 99999999999999964221 000 0 0001112211 12222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....++||||||+.+|.......++.+|++|+|+|+.++...+....|. .+.. .++|+++|+||+|+.
T Consensus 74 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 74 GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 23578999999999999999999999999999999999876655544442 2222 378999999999986
No 84
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.32 E-value=5e-12 Score=121.39 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=78.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~ 85 (794)
+.++|++ +|+.|+|||||+++|+...-.... . .|+... ...+.+
T Consensus 2 ~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~--~----------------~~~~~~~~~~~~~-------------- 46 (167)
T 1kao_A 2 REYKVVV---LGSGGVGKSALTVQFVTGTFIEKY--D----------------PTIEDFYRKEIEV-------------- 46 (167)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHHSCCCSCC--C----------------TTCCEEEEEEEEE--------------
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHHcCCCcccC--C----------------CCcceeEEEEEEE--------------
Confidence 3589999 999999999999999643211000 0 011110 111122
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHH----hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
++....+.+|||||+.+|.......++.+|++++|+|+.+....+.. ..+..+. ..++|.++++||+|+.
T Consensus 47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 47 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 22356799999999999999889999999999999999976443332 2222332 2478999999999986
No 85
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.32 E-value=5.2e-12 Score=123.45 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=77.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+..+|++ +|+.|+|||||+++|.......... ..+.|.+.....+.+.
T Consensus 3 ~~~ki~i---vG~~g~GKStLl~~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~-------------- 50 (172)
T 2gj8_A 3 HGMKVVI---AGRPNAGKSSLLNALAGREAAIVTD---------------IAGTTRDVLREHIHID-------------- 50 (172)
T ss_dssp -CEEEEE---EESTTSSHHHHHHHHHTSCCSCCCS---------------STTCCCSCEEEEEEET--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCcceeeC---------------CCCceeceeeEEEEEC--------------
Confidence 3578999 9999999999999995432111110 1223433333334442
Q ss_pred CCceEEEEEcCCCccchHH--------HHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~--------e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+.++.. .+...++.+|++++|+|+.+.........|..+.. .++|.++|+||+|+.
T Consensus 51 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 51 --GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp --TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred --CeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 56799999999876421 13346789999999999998776655555555443 268999999999986
No 86
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.32 E-value=2.9e-12 Score=128.27 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=80.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+...-.... . + ..|.+.. ...+.+ +
T Consensus 7 ~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--~---------~---t~~~~~~--~~~~~~--------------~ 53 (203)
T 1zbd_A 7 YMFKILI---IGNSSVGKTSFLFRYADDSFTPAF--V---------S---TVGIDFK--VKTIYR--------------N 53 (203)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHTCCCCSCC--C---------C---CCSEEEE--EEEEEE--------------T
T ss_pred eeeEEEE---ECCCCCCHHHHHHHHhcCCCCCCc--C---------C---ccceeEE--EEEEEE--------------C
Confidence 5689999 999999999999999532210000 0 0 0011111 112222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....+.||||||+.+|.......++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+.
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 54 DKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred CeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 2467899999999999999999999999999999999987554443333 33333 477899999999986
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.32 E-value=4.3e-12 Score=125.02 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=81.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+... .. + ...|+......+.+
T Consensus 16 ~~~~~i~v---~G~~~~GKssl~~~l~~~~--~~----------~-------~~~t~~~~~~~~~~-------------- 59 (186)
T 1ksh_A 16 ERELRLLM---LGLDNAGKTTILKKFNGED--VD----------T-------ISPTLGFNIKTLEH-------------- 59 (186)
T ss_dssp -CCEEEEE---ECSTTSSHHHHHHHHTTCC--CS----------S-------CCCCSSEEEEEEEE--------------
T ss_pred CCeeEEEE---ECCCCCCHHHHHHHHhcCC--CC----------c-------ccccCccceEEEEE--------------
Confidence 35789999 9999999999999995322 11 0 11233333333444
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..+++|||||+.+|.......++.+|++++|+|+.+....+.. ..+..+.. .++|.++++||+|+.
T Consensus 60 --~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 60 --RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp --TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred --CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 278999999999999988888899999999999999987554432 33344433 468999999999997
No 88
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.31 E-value=4.9e-12 Score=122.28 Aligned_cols=117 Identities=19% Similarity=0.174 Sum_probs=74.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...-.... ..|+........+. .
T Consensus 4 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~------------~ 50 (170)
T 1z08_A 4 AYSFKVVL---LGEGCVGKTSLVLRYCENKFNDKH------------------ITTLGASFLTKKLN------------I 50 (170)
T ss_dssp CEEEEEEE---ECCTTSCHHHHHHHHHHCCCCSSC------------------CCCCSCEEEEEEEE------------S
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHcCCCCcCC------------------CCccceEEEEEEEE------------E
Confidence 35689999 999999999999999643211000 01222111111222 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHH---HhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~---~~~~~~~iv~iNKiD~~ 155 (794)
++..+.+.+|||||+.+|.......++.+|++++|+|+.+....+....| ..+ ...++|+++++||+|+.
T Consensus 51 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 51 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 23467899999999999988888889999999999999986554443333 222 23578899999999986
No 89
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.31 E-value=4.8e-12 Score=123.28 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=80.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... ...+++......+.+ +
T Consensus 13 ~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~ 59 (179)
T 2y8e_A 13 RKFKLVF---LGEQSVGKTSLITRFMYDSFDNTY----------------QATIGIDFLSKTMYL--------------E 59 (179)
T ss_dssp EEEEEEE---EESTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEEE--------------T
T ss_pred cceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC----------------CCceeeEEEEEEEEE--------------C
Confidence 4589999 999999999999999743211100 011222222222222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH---hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~---~~~~~~iv~iNKiD~~ 155 (794)
+..+.+.+|||||+.+|.......++.+|++++|+|+.+....+....| ..+. ..++|+++++||+|+.
T Consensus 60 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 2357899999999999999889999999999999999876443333333 2222 2478899999999986
No 90
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.31 E-value=6.7e-12 Score=120.78 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=78.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+... .... ...|+..... ..+. .+
T Consensus 2 ~~~ki~v---~G~~~~GKssli~~l~~~~--~~~~----------------~~~t~~~~~~-~~~~------------~~ 47 (167)
T 1c1y_A 2 REYKLVV---LGSGGVGKSALTVQFVQGI--FVEK----------------YDPTIEDSYR-KQVE------------VD 47 (167)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHCC--CCCS----------------CCCCSEEEEE-EEEE------------SS
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHcCC--CCCC----------------CCCCccceEE-EEEE------------EC
Confidence 3589999 9999999999999996421 1110 0011111111 1111 23
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHH----hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+..+.+.+|||||+.+|.......++.+|++++|+|+.+....+... .+..+. ..++|.++++||+|+.
T Consensus 48 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 34678999999999999988889999999999999998754333322 222232 2478999999999986
No 91
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.31 E-value=9e-12 Score=123.26 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=78.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|+...-..... ..|.|.... +...
T Consensus 23 ~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~~---------------~~~~t~~~~---~~~~--------------- 66 (195)
T 3pqc_A 23 KGEVAF---VGRSNVGKSSLLNALFNRKIAFVSK---------------TPGKTRSIN---FYLV--------------- 66 (195)
T ss_dssp TCEEEE---EEBTTSSHHHHHHHHHTSCCSCCCS---------------SCCCCCCEE---EEEE---------------
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHcCccccccC---------------CCCCccCeE---EEEE---------------
Confidence 478999 9999999999999996443111110 012222211 1111
Q ss_pred CceEEEEEcCCC----------ccchHHHHHHhh---hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCcc
Q 003804 88 NEYLINLIDSPG----------HVDFSSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPG----------h~df~~e~~~~l---~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~ 154 (794)
+..+.+||||| +..|.......+ ..+|++++|+|+..+.......+++.+...++|.++|+||+|+
T Consensus 67 -~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 67 -NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145 (195)
T ss_dssp -TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred -CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 44688999999 334444444444 4559999999999988888888888888889999999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 146 ~ 146 (195)
T 3pqc_A 146 V 146 (195)
T ss_dssp S
T ss_pred C
Confidence 7
No 92
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.31 E-value=5.8e-12 Score=124.98 Aligned_cols=116 Identities=18% Similarity=0.090 Sum_probs=80.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... ..|+........+. .+
T Consensus 24 ~~~ki~v---~G~~~~GKSsLi~~l~~~~~~~~~------------------~~t~~~~~~~~~~~------------~~ 70 (193)
T 2oil_A 24 FVFKVVL---IGESGVGKTNLLSRFTRNEFSHDS------------------RTTIGVEFSTRTVM------------LG 70 (193)
T ss_dssp EEEEEEE---ESSTTSSHHHHHHHHHHSCCCSSC------------------CCCSSEEEEEEEEE------------ET
T ss_pred cceEEEE---ECcCCCCHHHHHHHHhcCCCCCCC------------------CCccceeEEEEEEE------------EC
Confidence 4689999 999999999999999653321111 01111111111111 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....+.||||||+.+|.......++.+|++|+|+|+......+....| ..+.. .++|+++++||+|+.
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 2467899999999999998889999999999999999986554433333 34433 367889999999986
No 93
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.31 E-value=4.6e-12 Score=122.31 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=79.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+...-. . +....++.......+.+ +
T Consensus 2 ~~~~i~v---~G~~~~GKssli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~ 48 (170)
T 1g16_A 2 SIMKILL---IGDSGVGKSCLLVRFVEDKFN--P--------------SFITTIGIDFKIKTVDI--------------N 48 (170)
T ss_dssp CEEEEEE---EESTTSSHHHHHHHHHHCCCC--C---------------------CCEEEEEEES--------------S
T ss_pred CceEEEE---ECcCCCCHHHHHHHHHhCCCC--C--------------CCCCccceeEEEEEEEE--------------C
Confidence 3589999 999999999999999642210 0 00111222222222222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+..+.+.||||||+.+|.......++.+|++++|+|+.+....+....| ..+.. .++|+++++||+|+.
T Consensus 49 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 49 GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 3457899999999999988888899999999999999976554443333 33332 377899999999984
No 94
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.31 E-value=2.7e-12 Score=134.10 Aligned_cols=109 Identities=22% Similarity=0.255 Sum_probs=80.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|++|+|||||+++|.... ....+ ..|+|+......+.+. +
T Consensus 3 kI~l---vG~~n~GKSTL~n~L~g~~----------~~v~~------~pg~Tv~~~~~~~~~~----------------~ 47 (256)
T 3iby_A 3 HALL---IGNPNCGKTTLFNALTNAN----------QRVGN------WPGVTVEKKTGEFLLG----------------E 47 (256)
T ss_dssp EEEE---EESTTSSHHHHHHHHHTTS----------EEEEE------CTTSSSEEEEEEEEET----------------T
T ss_pred EEEE---ECCCCCCHHHHHHHHHCCC----------CCccC------CCCceEEEEEEEEEEC----------------C
Confidence 6888 9999999999999994221 01111 1367777666666664 6
Q ss_pred eEEEEEcCCCccchHHH----------HHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSE----------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e----------~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..++||||||+.+|... ....+ +.+|++|+|+|+.. ......++.++...++|+++++||+|+.
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 79999999999887641 22334 78999999999987 2344556677778899999999999986
No 95
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.30 E-value=1.5e-12 Score=146.86 Aligned_cols=113 Identities=27% Similarity=0.301 Sum_probs=79.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+|++ +|++|+|||||+++|+...-.+ + +...|.|.+.....+.|.
T Consensus 4 ~~V~i---vG~~nvGKStL~n~l~~~~~~~---------v------~~~~g~T~d~~~~~~~~~---------------- 49 (436)
T 2hjg_A 4 PVVAI---VGRPNVGKSTIFNRIAGERISI---------V------EDTPGVTRDRIYSSAEWL---------------- 49 (436)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTC----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCCcee---------e------cCCCCCccceEEEEEEEC----------------
Confidence 57889 9999999999999994211111 1 112356655544444443
Q ss_pred ceEEEEEcCCCcc--------chHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~--------df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+. .|...+..+++.+|++|+|+|+.+|.......+++.+...++|.++++||+|+.
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 6789999999986 567778889999999999999999999988888887778899999999999986
No 96
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=7.4e-12 Score=120.96 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=78.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+... .... ...|+....... +. .+
T Consensus 2 ~~~~i~v---~G~~~~GKssli~~l~~~~--~~~~----------------~~~t~~~~~~~~-~~------------~~ 47 (172)
T 2erx_A 2 NDYRVAV---FGAGGVGKSSLVLRFVKGT--FRES----------------YIPTVEDTYRQV-IS------------CD 47 (172)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHTCC--CCSS----------------CCCCSCEEEEEE-EE------------ET
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHcCC--CCCC----------------CCCCccccEEEE-EE------------EC
Confidence 3589999 9999999999999996321 1100 001111111111 11 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHHHHHHh-----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG-----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~~~~~~-----~~~~~iv~iNKiD~~ 155 (794)
...+.+.+|||||+.+|.......++.+|++++|+|+.+...... ...+..+.. .++|+++++||+|+.
T Consensus 48 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 48 KSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 235789999999999999999999999999999999987543332 334444433 368999999999986
No 97
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.30 E-value=6.9e-12 Score=123.44 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=76.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... .+ .+.......+.+ +
T Consensus 3 ~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--~~---------------t~~~~~~~~~~~--------------~ 48 (189)
T 4dsu_A 3 TEYKLVV---VGADGVGKSALTIQLIQNHFVDEY--DP---------------TIEDSYRKQVVI--------------D 48 (189)
T ss_dssp EEEEEEE---ECCTTSSHHHHHHHHHHSSCCCCC--CT---------------TCCEEEEEEEEE--------------T
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHHhCCCCCCC--CC---------------CchheEEEEEEE--------------C
Confidence 5789999 999999999999999743311110 11 010111111112 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH----hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+..+.++||||||+.+|.......++.+|++++|+|+.+....+....| ..+. ..++|.++++||+|+.
T Consensus 49 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 49 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp TEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred CcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 2356789999999999999899999999999999999976544433333 2222 2478999999999986
No 98
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.30 E-value=8.8e-12 Score=140.62 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=82.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++|+|||||+++|+.....+... ..|+|.+.....+.+.
T Consensus 179 ~~~kvai---vG~~gvGKSTLln~l~g~~~~~v~~---------------~~gtT~d~~~~~i~~~-------------- 226 (439)
T 1mky_A 179 DAIKVAI---VGRPNVGKSTLFNAILNKERALVSP---------------IPGTTRDPVDDEVFID-------------- 226 (439)
T ss_dssp SCEEEEE---ECSTTSSHHHHHHHHHTSTTEEECC---------------CC------CCEEEEET--------------
T ss_pred cCceEEE---ECCCCCCHHHHHHHHhCCcccccCC---------------CCCCcCCceEEEEEEC--------------
Confidence 3589999 9999999999999996433221111 1234555555556664
Q ss_pred CCceEEEEEcCCCccchHH------------HHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCcc
Q 003804 87 GNEYLINLIDSPGHVDFSS------------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~------------e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~ 154 (794)
+..+.+|||||...+.. .+..+++.+|++++|+|+..+...+...++..+...+.|+++++||+|+
T Consensus 227 --g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 227 --GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDL 304 (439)
T ss_dssp --TEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred --CEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccC
Confidence 67899999999854332 2356788999999999999999888888888888889999999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 305 ~ 305 (439)
T 1mky_A 305 V 305 (439)
T ss_dssp S
T ss_pred C
Confidence 7
No 99
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.30 E-value=5.3e-12 Score=132.09 Aligned_cols=112 Identities=24% Similarity=0.368 Sum_probs=82.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|++|+|||||+++|.... ....+ ..|+|+......+.+.
T Consensus 4 ~~~kI~l---vG~~nvGKTsL~n~l~g~~----------~~~~~------~pg~tv~~~~~~~~~~-------------- 50 (258)
T 3a1s_A 4 HMVKVAL---AGCPNVGKTSLFNALTGTK----------QYVAN------WPGVTVEKKEGVFTYK-------------- 50 (258)
T ss_dssp EEEEEEE---ECCTTSSHHHHHHHHHTTC----------EEEEE------CTTSCCEEEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHCCC----------CcccC------CCCceEEEEEEEEEEC--------------
Confidence 5689999 9999999999999994211 01111 1367777666666553
Q ss_pred CCceEEEEEcCCCccchHH-----HH-HHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSS-----EV-TAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~-----e~-~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+.||||||+.+|.. .+ ...+ ..+|++++|+|+.... .....+.++...++|+++++||+|+.
T Consensus 51 --~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 51 --GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp --TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred --CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 78999999999987753 12 2223 4799999999998743 23446677778899999999999985
No 100
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=5.7e-12 Score=124.45 Aligned_cols=112 Identities=19% Similarity=0.145 Sum_probs=78.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...-. . ...|+......+.+.
T Consensus 14 ~~~~~i~v---~G~~~~GKssl~~~l~~~~~~--~-----------------~~~t~~~~~~~~~~~------------- 58 (187)
T 1zj6_A 14 HQEHKVII---VGLDNAGKTTILYQFSMNEVV--H-----------------TSPTIGSNVEEIVIN------------- 58 (187)
T ss_dssp TSCEEEEE---EESTTSSHHHHHHHHHTTSCE--E-----------------EECCSCSSCEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCCCC--c-----------------CcCCCccceEEEEEC-------------
Confidence 35789999 999999999999999521110 0 011333333344443
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+.+|.......++.+|++|+|+|+.++...+.. ..+..+.. .+.|.++|+||+|+.
T Consensus 59 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 59 ---NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp ---TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 68999999999999988888899999999999999987544433 33344443 478999999999997
No 101
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.30 E-value=6e-12 Score=121.50 Aligned_cols=116 Identities=21% Similarity=0.174 Sum_probs=80.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... . ...|.+.. ...+.+ .
T Consensus 5 ~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~--~------------~~~~~~~~--~~~~~~--------------~ 51 (170)
T 1z0j_A 5 RELKVCL---LGDTGVGKSSIMWRFVEDSFDPNI--N------------PTIGASFM--TKTVQY--------------Q 51 (170)
T ss_dssp EEEEEEE---ECCTTSSHHHHHHHHHHSCCCTTC--C------------CCCSEEEE--EEEEEE--------------T
T ss_pred cceEEEE---ECcCCCCHHHHHHHHHcCCCCCCC--C------------CceeEEEE--EEEEEE--------------C
Confidence 5689999 999999999999999643211000 0 00111111 112222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....+.+|||||+.+|.......++.+|++++|+|+.+....+....| ..+.. .++|+++++||+|+.
T Consensus 52 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 52 NELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred CeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 2357899999999999998889999999999999999987655554333 33333 356778899999986
No 102
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.30 E-value=1e-11 Score=122.35 Aligned_cols=112 Identities=19% Similarity=0.145 Sum_probs=80.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|. +.. .. ....|+......+.+
T Consensus 14 ~~~~ki~i---vG~~~vGKSsL~~~l~-----------~~~-~~-------~~~~t~g~~~~~~~~-------------- 57 (181)
T 1fzq_A 14 DQEVRILL---LGLDNAGKTTLLKQLA-----------SED-IS-------HITPTQGFNIKSVQS-------------- 57 (181)
T ss_dssp SSCEEEEE---EESTTSSHHHHHHHHC-----------CSC-CE-------EEEEETTEEEEEEEE--------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHh-----------cCC-CC-------cccCcCCeEEEEEEE--------------
Confidence 35689999 9999999999999993 210 00 001123322223334
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..+.+|||||+.+|.......++.+|++++|+|+.+.-..+... .+..+.. .++|+++++||+|+.
T Consensus 58 --~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 58 --QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp --TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred --CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 2789999999999999988899999999999999999765444322 2333322 467999999999997
No 103
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.30 E-value=3.6e-12 Score=125.30 Aligned_cols=111 Identities=19% Similarity=0.135 Sum_probs=81.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...- . ....|+......+.+.
T Consensus 20 ~~~~i~v---~G~~~~GKSsli~~l~~~~~--~-----------------~~~~t~~~~~~~~~~~-------------- 63 (181)
T 2h17_A 20 QEHKVII---VGLDNAGKTTILYQFSMNEV--V-----------------HTSPTIGSNVEEIVIN-------------- 63 (181)
T ss_dssp -CEEEEE---EEETTSSHHHHHHHHHTTSC--E-----------------EEECCSSSSCEEEEET--------------
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHhcCCC--C-----------------ccCCcCceeeEEEEEC--------------
Confidence 5689999 99999999999999953211 0 0112222223334443
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+.+|.......++.+|++|+|+|+.+....+.. ..+..+.. .++|+++++||+|+.
T Consensus 64 --~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 64 --NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp --TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred --CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 68999999999999988888899999999999999987544433 33444443 578899999999997
No 104
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.30 E-value=4.5e-12 Score=126.14 Aligned_cols=112 Identities=20% Similarity=0.143 Sum_probs=76.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+ +.. ..+ ...|+......+.+
T Consensus 27 ~~~~ki~v---~G~~~vGKSsLi~~l~-----------~~~-~~~-------~~~t~~~~~~~~~~-------------- 70 (192)
T 2b6h_A 27 KKQMRILM---VGLDAAGKTTILYKLK-----------LGE-IVT-------TIPTIGFNVETVEY-------------- 70 (192)
T ss_dssp TSCEEEEE---EESTTSSHHHHHHHHC-----------SSC-CEE-------EEEETTEEEEEEEE--------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHH-----------hCC-ccc-------cCCcCceeEEEEEE--------------
Confidence 35789999 9999999999999993 110 000 01244333333444
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..+++|||||+.+|.......++.+|++|+|+|+.+....+.. ..+..+.. .++|+++|+||+|+.
T Consensus 71 --~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 71 --KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp --TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred --CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 378999999999999988888899999999999999987544433 23333333 378999999999997
No 105
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.30 E-value=2e-11 Score=119.73 Aligned_cols=115 Identities=23% Similarity=0.262 Sum_probs=79.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~ 84 (794)
.+.++|++ +|+.|+|||||+++|+... ......+ |.... ...+.+
T Consensus 16 ~~~~ki~v---~G~~~~GKSsli~~l~~~~--~~~~~~~----------------t~~~~~~~~~~~------------- 61 (187)
T 2a9k_A 16 LALHKVIM---VGSGGVGKSALTLQFMYDE--FVEDYEP----------------TKADSYRKKVVL------------- 61 (187)
T ss_dssp -CEEEEEE---ECSTTSSHHHHHHHHHHSC--CCCSCCT----------------TCCEEEEEEEEE-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHhhCC--CCCcCCC----------------ccceEEEEEEEE-------------
Confidence 35689999 9999999999999997533 1110000 11111 111222
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH----hcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~----~~~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.......++.+|++++|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 62 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 62 -DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp -TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred -CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 22356899999999999999999999999999999999975443333222 2222 2378999999999986
No 106
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.30 E-value=3.9e-12 Score=125.89 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=80.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+...-.... . ...|.+... ..+.+ +
T Consensus 21 ~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~------------~t~~~~~~~--~~~~~--------------~ 67 (189)
T 2gf9_A 21 YMFKLLL---IGNSSVGKTSFLFRYADDSFTPAF--V------------STVGIDFKV--KTVYR--------------H 67 (189)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHHSCCCCSC--C------------CCCCCEEEE--EEEEE--------------T
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHcCCCCCCc--C------------CceeEEEEE--EEEEE--------------C
Confidence 4689999 999999999999999643211100 0 001122211 11222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
++...++||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 68 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp TEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 2467899999999999988888999999999999999876544443333 44443 378999999999986
No 107
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.30 E-value=1.1e-11 Score=118.65 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=77.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhccccccC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~ 86 (794)
.++|++ +|+.|+|||||+++|+...- .....+ |+... ...+.+ +
T Consensus 3 ~~~i~v---~G~~~~GKssl~~~l~~~~~--~~~~~~----------------~~~~~~~~~~~~--------------~ 47 (166)
T 2ce2_X 3 EYKLVV---VGAGGVGKSALTIQLIQNHF--VDECDP----------------TIEDSYRKQVVI--------------D 47 (166)
T ss_dssp EEEEEE---EESTTSSHHHHHHHHHHSSC--CSCCCT----------------TCCEEEEEEEEE--------------T
T ss_pred eeEEEE---ECCCCCCHHHHHHHHHhCcC--ccccCC----------------ccceEEEEEEEE--------------C
Confidence 578999 99999999999999964321 110000 11111 111112 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+..+.+.+|||||+.+|.......++.+|++++|+|+.+....+... .+..+.. .++|.++++||+|+.
T Consensus 48 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 48 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp TEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred CEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 24578999999999999988889999999999999998764433322 2233322 378999999999987
No 108
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.30 E-value=5e-12 Score=125.43 Aligned_cols=117 Identities=20% Similarity=0.134 Sum_probs=80.7
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|+.|+|||||+++|+...-.... ...++.......+.+
T Consensus 19 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~-------------- 65 (191)
T 2a5j_A 19 SYLFKYII---IGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVNI-------------- 65 (191)
T ss_dssp CEEEEEEE---ESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEEEE--------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEE--------------
Confidence 35789999 999999999999999643211100 001111122222222
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+++...++||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 66 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 22357899999999999988888999999999999999986554443333 33333 377899999999986
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.30 E-value=9.8e-12 Score=120.39 Aligned_cols=111 Identities=20% Similarity=0.225 Sum_probs=74.5
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|....- . .+ ...++|+......+.+.
T Consensus 3 ~~~v~l---vG~~gvGKStL~~~l~~~~~---~--~~-----------~~~~~t~~~~~~~~~~~--------------- 48 (165)
T 2wji_A 3 SYEIAL---IGNPNVGKSTIFNALTGENV---Y--IG-----------NWPGVTVEKKEGEFEYN--------------- 48 (165)
T ss_dssp EEEEEE---ECSTTSSHHHHHHHHHCCSS---S--CC----------------CCCCCEEEEEET---------------
T ss_pred ccEEEE---ECCCCCCHHHHHHHHhCCCe---e--cc-----------CCCCcceeeeEEEEEEC---------------
Confidence 578999 99999999999999942110 0 01 01244554444444443
Q ss_pred CceEEEEEcCCCccchH------HHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~------~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+.+|. .-....++ .+|++++|+|+... ......+..+...++|.++++||+|+.
T Consensus 49 -~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 49 -GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp -TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred -CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 6789999999998874 12233343 78999999999862 122334455566789999999999986
No 110
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.29 E-value=8.2e-12 Score=123.56 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=79.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... ...++.......+.+ +
T Consensus 19 ~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~ 65 (189)
T 1z06_A 19 RIFKIIV---IGDSNVGKTCLTYRFCAGRFPDRT----------------EATIGVDFRERAVDI--------------D 65 (189)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHHSSCCSSC----------------CCCCSCCEEEEEEEE--------------T
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHHcCCCCCCC----------------CCCcceEEEEEEEEE--------------C
Confidence 4689999 999999999999999642211000 011122222222222 2
Q ss_pred CCceEEEEEcCCCccchH-HHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH----hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~-~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+....++||||||+.+|. ......++.+|++|+|+|+.+....+...-| ..+. ..++|+++++||+|+.
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 66 GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 235789999999999988 6677889999999999999976544333323 2222 3568999999999986
No 111
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=8.9e-12 Score=125.20 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=80.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc--cceEEEEeecchhhhhccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~ 84 (794)
..++|++ +|+.|+|||||+++|+... ... ..+.|+. .....+.+
T Consensus 25 ~~~ki~l---vG~~~vGKSsLi~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~------------- 70 (201)
T 2ew1_A 25 FLFKIVL---IGNAGVGKTCLVRRFTQGL--FPP----------------GQGATIGVDFMIKTVEI------------- 70 (201)
T ss_dssp EEEEEEE---EESTTSSHHHHHHHHHHSS--CCT----------------TCCCCCSEEEEEEEEEE-------------
T ss_pred cceEEEE---ECcCCCCHHHHHHHHHhCC--CCC----------------CCCCccceeEEEEEEEE-------------
Confidence 4689999 9999999999999996422 110 0112222 22222233
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH---hcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~---~~~~~~iv~iNKiD~~ 155 (794)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....+...-| ..+. ..++|+++|+||+|+.
T Consensus 71 -~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 71 -NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp -TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 22357899999999999999899999999999999999976554443333 2222 2467889999999986
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.29 E-value=1.7e-11 Score=131.61 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=85.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|..|+|||||+++|+...... .....+.|++.....+.+.
T Consensus 2 ~~~KI~l---vG~~~vGKSSLi~~l~~~~~~~---------------~~~~~~~Ti~~~~~~~~~~-------------- 49 (307)
T 3r7w_A 2 LGSKLLL---MGRSGSGKSSMRSIIFSNYSAF---------------DTRRLGATIDVEHSHLRFL-------------- 49 (307)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHSCCCTG---------------GGGGCCCCCSEEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHhCCCCc---------------cccCcCCccceEEEEEEeC--------------
Confidence 3578999 9999999999999985321111 1123456776666555542
Q ss_pred CCceEEEEEcCCCccch-----HHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHH----H--hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDF-----SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----L--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df-----~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~----~--~~~~~~iv~iNKiD~~ 155 (794)
+++.+++|||||+.+| .......++.+|++|+|+|+.+....+....|... . ..++|+++++||+|+.
T Consensus 50 -~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 50 -GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp -TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred -CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 3789999999999998 44566677899999999999988766655444322 2 2378999999999987
No 113
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.29 E-value=4.9e-12 Score=123.93 Aligned_cols=115 Identities=21% Similarity=0.178 Sum_probs=76.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (794)
.+.++|++ +|+.|+|||||+++|+...- .....+ |+.... ..+.+
T Consensus 4 ~~~~ki~~---~G~~~~GKSsli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~------------- 49 (181)
T 3t5g_A 4 SKSRKIAI---LGYRSVGKSSLTIQFVEGQF--VDSYDP----------------TIENTFTKLITV------------- 49 (181)
T ss_dssp EEEEEEEE---EESTTSSHHHHHHHHHHSSC--CSCCCT----------------TCCEEEEEEEEE-------------
T ss_pred CceEEEEE---ECcCCCCHHHHHHHHHcCCC--CCCCCC----------------CccccEEEEEEE-------------
Confidence 46789999 99999999999999964321 110000 111111 11112
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-----HHHHhcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-----~~~~~~~~~~iv~iNKiD~~ 155 (794)
++..+.++||||||+.+|.......++.+|++++|+|+.+....+....| +.....++|+++++||+|+.
T Consensus 50 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 50 -NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp -TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred -CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 22357889999999999987777888999999999999975444333222 22223478999999999985
No 114
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.29 E-value=7.2e-12 Score=125.44 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=61.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccc--cceEEEEeecchhhhhcccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRG 83 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~ 83 (794)
...++|++ +|+.|+|||||+++|+........ + ...|+. .....+.+.
T Consensus 18 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~---------~-------~~~t~~~~~~~~~~~~~----------- 67 (208)
T 2yc2_C 18 TLRCKVAV---VGEATVGKSALISMFTSKGSKFLK---------D-------YAMTSGVEVVVAPVTIP----------- 67 (208)
T ss_dssp EEEEEEEE---C--------------------------------------------------CEEEECT-----------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHhCCCcccC---------C-------CCCccceEEEEEEEEEC-----------
Confidence 35689999 999999999999999543111110 0 011221 222223332
Q ss_pred ccCCC--ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh------cCCccEEEEecCcc
Q 003804 84 ERQGN--EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDR 154 (794)
Q Consensus 84 ~~~~~--~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~------~~~~~iv~iNKiD~ 154 (794)
+. .+.+.||||||+.+|.......++.+|++|+|+|+.++...+....| ..+.. .++|+++|+||+|+
T Consensus 68 ---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 144 (208)
T 2yc2_C 68 ---DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDL 144 (208)
T ss_dssp ---TSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--
T ss_pred ---CcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECccc
Confidence 23 57899999999999998888999999999999999987654444333 33333 47899999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 145 ~ 145 (208)
T 2yc2_C 145 P 145 (208)
T ss_dssp -
T ss_pred c
Confidence 7
No 115
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.29 E-value=6e-12 Score=123.55 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=79.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~ 85 (794)
+.++|++ +|+.|+|||||+++|+... ...... .|+... ...+.+
T Consensus 4 ~~~~i~~---~G~~~~GKssl~~~l~~~~--~~~~~~----------------~t~~~~~~~~~~~-------------- 48 (186)
T 1mh1_A 4 QAIKCVV---VGDGAVGKTCLLISYTTNA--FPGEYI----------------PTVFDNYSANVMV-------------- 48 (186)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHHSS--CCSSCC----------------CCSCCEEEEEEEE--------------
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHHcCC--CCCCcC----------------CcccceeEEEEEE--------------
Confidence 4689999 9999999999999996422 111000 011111 111112
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HH-HHHHhc--CCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~-~~~~~~--~~~~iv~iNKiD~~ 155 (794)
++....+.+|||||+.+|.......++.+|++++|+|+.++...+... .| ..+... ++|+++++||+|+.
T Consensus 49 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence 234678889999999999888888899999999999999876555443 33 333332 78999999999997
No 116
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=5.7e-12 Score=125.00 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=81.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|+.|+|||||+++|+...-..... . ..|++... ..+.+
T Consensus 21 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~~-----~---------t~~~~~~~--~~~~~-------------- 67 (191)
T 3dz8_A 21 DYMFKLLI---IGNSSVGKTSFLFRYADDTFTPAFV-----S---------TVGIDFKV--KTVYR-------------- 67 (191)
T ss_dssp EECEEEEE---EESTTSSHHHHHHHHHHHTTCCCEE-----E---------EETTTEEE--EEEEE--------------
T ss_pred CeeeEEEE---ECCCCcCHHHHHHHHhcCCCCcccC-----C---------CeeeEEEE--EEEEE--------------
Confidence 35689999 9999999999999997543211100 0 00112211 12222
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
++....+.||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 23478899999999999999999999999999999999976544433333 33333 477899999999985
No 117
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.27 E-value=8.4e-12 Score=121.22 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=71.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... ...|.+... ..+.+ +
T Consensus 3 ~~~ki~i---~G~~~vGKSsl~~~l~~~~~~~~~---------------~~~~~~~~~--~~~~~--------------~ 48 (175)
T 2nzj_A 3 ALYRVVL---LGDPGVGKTSLASLFAGKQERDLH---------------EQLGEDVYE--RTLTV--------------D 48 (175)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHCC-----C---------------CCSSSSEEE--EEEEE--------------T
T ss_pred eEEEEEE---ECCCCccHHHHHHHHhcCCCcccc---------------CccccceeE--EEEEE--------------C
Confidence 4689999 999999999999999521111000 011222221 12222 2
Q ss_pred CCceEEEEEcCCCccc--hHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHhc----CCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVD--FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE----RIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d--f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~~----~~~~iv~iNKiD~~ 155 (794)
+....+.+|||||+.+ +.......++.+|++++|+|+.+....+....| ..+... ++|+++++||+|+.
T Consensus 49 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 49 GEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp TEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred CEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 2356899999999988 445556677889999999999876544433333 344433 78999999999986
No 118
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.27 E-value=4.6e-12 Score=127.63 Aligned_cols=116 Identities=20% Similarity=0.155 Sum_probs=79.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.++|||||+++|+...-.. . ....++.......+.+.
T Consensus 19 ~~~~i~v---~G~~~~GKSsli~~l~~~~~~~-~---------------~~~~~~~~~~~~~~~~~-------------- 65 (213)
T 3cph_A 19 SIMKILL---IGDSGVGKSCLLVRFVEDKFNP-S---------------FITTIGIDFKIKTVDIN-------------- 65 (213)
T ss_dssp -CEEEEE---ECSTTSSHHHHHHHHHHCCCCC-S---------------SSCCCSCCEEEEEEEET--------------
T ss_pred cceEEEE---ECCCCCCHHHHHHHHHhCCCCc-c---------------cCCcccceEEEEEEEEC--------------
Confidence 3689999 9999999999999996422110 0 00112222222233332
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+..+.+.||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 66 GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 2347899999999999988888999999999999999976544443333 33332 367899999999984
No 119
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.27 E-value=3.5e-11 Score=120.30 Aligned_cols=114 Identities=23% Similarity=0.237 Sum_probs=79.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~ 85 (794)
+.++|++ +|+.|+|||||+++|+...- .....+ |+... ...+.+
T Consensus 13 ~~~ki~v---~G~~~~GKSsli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~-------------- 57 (206)
T 2bov_A 13 ALHKVIM---VGSGGVGKSALTLQFMYDEF--VEDYEP----------------TKADSYRKKVVL-------------- 57 (206)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHSCC--CTTCCT----------------TCCEEEEEEEEE--------------
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHHhCCC--CCCCCC----------------ccceEEEEEEEE--------------
Confidence 4689999 99999999999999964331 110001 11111 112222
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++++||+|+.
T Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 22356899999999999999999999999999999999976544333333 22222 378999999999986
No 120
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.27 E-value=1.5e-11 Score=122.11 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=80.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+... ...... .|+...... .+. .
T Consensus 21 ~~~~ki~~---vG~~~~GKSsl~~~l~~~~--~~~~~~----------------~t~~~~~~~-~~~------------~ 66 (194)
T 3reg_A 21 KKALKIVV---VGDGAVGKTCLLLAFSKGE--IPTAYV----------------PTVFENFSH-VMK------------Y 66 (194)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHHSC--CCSSCC----------------CCSEEEEEE-EEE------------E
T ss_pred ceeeEEEE---ECcCCCCHHHHHHHHhcCC--CCCccC----------------CeeeeeeEE-EEE------------E
Confidence 35689999 9999999999999996432 111000 111111111 111 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHH-HHHh--cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~-~~~~--~~~~~iv~iNKiD~~ 155 (794)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....... ..|. .+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 23467789999999999998888999999999999999987555442 3343 3322 367999999999986
No 121
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.27 E-value=1.5e-11 Score=121.47 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=69.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~ 85 (794)
+.++|++ +|+.|+|||||+++|+...- .....+ |.... ...+.+
T Consensus 20 ~~~ki~v---vG~~~~GKSsli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~-------------- 64 (190)
T 3con_A 20 TEYKLVV---VGAGGVGKSALTIQLIQNHF--VDEYDP----------------TIEDSYRKQVVI-------------- 64 (190)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHHSSC--CSCCCT----------------TCCEEEEEEEEE--------------
T ss_pred ceeEEEE---ECcCCCCHHHHHHHHHcCCC--ccccCC----------------ccceEEEEEEEE--------------
Confidence 5689999 99999999999999974321 110011 11111 111222
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.......++.+|++++|+|+.+....+....| ..+.. .++|.++++||+|+.
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 65 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp TTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 22357799999999999998889999999999999999987554443333 22222 378999999999986
No 122
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=131.33 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=79.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|+.|+|||||+++|+ +.. ...+....++.......+.+.
T Consensus 31 ~~~~ki~v---vG~~~~GKSsli~~l~-----------~~~-----~~~~~~~~~~~~~~~~~~~~~------------- 78 (199)
T 3l0i_B 31 DYLFKLLL---IGDSGVGKSCLLLRFA-----------DDT-----YTESYISTIGVDFKIRTIELD------------- 78 (199)
T ss_dssp SEEEEEEE---ECCTTSCCTTTTTSSB-----------CCC-----CCCHHHHHHCCSEEEEEEEET-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHh-----------cCC-----CCCCcCCcccceEEEEEEEEC-------------
Confidence 45789999 9999999999999983 210 011122233333333333332
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHhc---CCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE---RIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~~---~~~~iv~iNKiD~~ 155 (794)
+..+.++||||||+.+|.......++.+|++|+|+|+.+....+....|. .+... ++|+++|+||+|+.
T Consensus 79 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 79 -GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp -TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred -CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 23478999999999999888888899999999999999876655544443 33332 67889999999986
No 123
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.27 E-value=2.4e-12 Score=145.98 Aligned_cols=114 Identities=26% Similarity=0.308 Sum_probs=84.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
..+|++ +|++|+|||||+++|+...-.+ + +...|.|.+.....+.|
T Consensus 23 ~~~V~l---vG~~nvGKSTL~n~l~~~~~~~---------v------~~~~g~t~~~~~~~~~~---------------- 68 (456)
T 4dcu_A 23 KPVVAI---VGRPNVGKSTIFNRIAGERISI---------V------EDTPGVTRDRIYSSAEW---------------- 68 (456)
T ss_dssp CCEEEE---ECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTT----------------
T ss_pred CCEEEE---ECCCCCcHHHHHHHHhCCCCcc---------c------CCCCCcceeEEEEEEEE----------------
Confidence 458899 9999999999999993211100 1 11245666555544444
Q ss_pred CceEEEEEcCCC--------ccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPG--------HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPG--------h~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+..+++||||| +..|...+..+++.+|++|+|+|+.+|.......+++.+.+.++|+++|+||+|+.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 377899999999 66777888899999999999999999999999999999888899999999999986
No 124
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.27 E-value=2.8e-11 Score=127.69 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=75.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+......... .+ ........+++......+.+ +
T Consensus 7 ~~~~I~v---vG~~g~GKSTLin~L~~~~~~~~~~-~~-------~~~~~~~t~~~~~~~~~~~~--------------~ 61 (274)
T 3t5d_A 7 FEFTLMV---VGESGLGKSTLINSLFLTDLYSPEY-PG-------PSHRIKKTVQVEQSKVLIKE--------------G 61 (274)
T ss_dssp CEEEEEE---EECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC---------------
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHhCCCccccCC-CC-------cccccCCceEEEEEEEEEec--------------C
Confidence 3689999 9999999999999994222111110 00 00111233333333333332 2
Q ss_pred CCceEEEEEcCCCccchH-------HHH-------HHhhhc-------------cCceEEEEeCC-CCcchhHHHHHHHH
Q 003804 87 GNEYLINLIDSPGHVDFS-------SEV-------TAALRI-------------TDGALVVVDCI-EGVCVQTETVLRQA 138 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~-------~e~-------~~~l~~-------------~D~ailvvda~-~gv~~qt~~~~~~~ 138 (794)
+....++||||||+.++. ..+ ...++. +|+++++|++. .+.......+++.+
T Consensus 62 ~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l 141 (274)
T 3t5d_A 62 GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL 141 (274)
T ss_dssp -CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH
T ss_pred CeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 234689999999985431 111 223332 67899998665 58888888888887
Q ss_pred HhcCCccEEEEecCccc
Q 003804 139 LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 139 ~~~~~~~iv~iNKiD~~ 155 (794)
.. ++|.|+|+||+|+.
T Consensus 142 ~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 142 HE-KVNIIPLIAKADTL 157 (274)
T ss_dssp TT-TSCEEEEESSGGGS
T ss_pred hc-cCCEEEEEeccCCC
Confidence 66 89999999999986
No 125
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.27 E-value=5.3e-12 Score=126.47 Aligned_cols=116 Identities=20% Similarity=0.175 Sum_probs=78.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+...-.. +....++.......+.+ +
T Consensus 24 ~~~ki~v---~G~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~--------------~ 70 (200)
T 2o52_A 24 FLFKFLV---IGSAGTGKSCLLHQFIENKFKQ----------------DSNHTIGVEFGSRVVNV--------------G 70 (200)
T ss_dssp EEEEEEE---EESTTSSHHHHHHHHHC----------------------------CCEEEEEEEE--------------T
T ss_pred cceEEEE---ECcCCCCHHHHHHHHHhCCCCc----------------cCCCcccceeEEEEEEE--------------C
Confidence 4689999 9999999999999995321100 00111122222222222 2
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHH---hcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~---~~~~~~iv~iNKiD~~ 155 (794)
+....++||||||+.+|.......++.+|++|+|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 71 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 71 GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp TEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred CeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 2357899999999998888888899999999999999987655544333 2332 2477899999999986
No 126
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=1.6e-11 Score=121.94 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=81.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (794)
.+.++|++ +|+.|+|||||+++|+... ...... .|+.... ..+.+
T Consensus 16 ~~~~ki~v---~G~~~~GKssli~~l~~~~--~~~~~~----------------~t~~~~~~~~~~~------------- 61 (194)
T 2atx_A 16 ALMLKCVV---VGDGAVGKTCLLMSYANDA--FPEEYV----------------PTVFDHYAVSVTV------------- 61 (194)
T ss_dssp EEEEEEEE---EECTTSSHHHHHHHHHHSS--CCCSCC----------------CSSCCCEEEEEES-------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCC--CCCCCC----------------CcccceeEEEEEE-------------
Confidence 35789999 9999999999999997532 111000 1111111 11222
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HH-HHHHhc--CCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~-~~~~~~--~~~~iv~iNKiD~~ 155 (794)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....+... .| ..+... ++|+++++||+|+.
T Consensus 62 -~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 62 -GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp -SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred -CCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 234578999999999999888888999999999999999865544432 33 444443 78999999999987
No 127
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.26 E-value=6.1e-12 Score=123.39 Aligned_cols=112 Identities=20% Similarity=0.123 Sum_probs=78.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+ +... . ....|+......+.+.
T Consensus 16 ~~~~~i~v---~G~~~~GKssli~~l~-----------~~~~-~-------~~~~t~~~~~~~~~~~------------- 60 (183)
T 1moz_A 16 NKELRILI---LGLDGAGKTTILYRLQ-----------IGEV-V-------TTKPTIGFNVETLSYK------------- 60 (183)
T ss_dssp SSCEEEEE---EEETTSSHHHHHHHTC-----------CSEE-E-------EECSSTTCCEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHh-----------cCCc-C-------ccCCcCccceEEEEEC-------------
Confidence 35789999 9999999999999993 1110 0 1123444333444443
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHH----hcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
+..+.+|||||+.+|.......++.+|++++|+|+.+....+.. ..+..+. ..++|.++++||+|+.
T Consensus 61 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 61 ---NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp ---TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 68999999999999888888889999999999999887544432 3334443 2567899999999987
No 128
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.26 E-value=5.9e-12 Score=124.49 Aligned_cols=112 Identities=20% Similarity=0.142 Sum_probs=81.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+. +.. .+ ...|+......+.+.
T Consensus 20 ~~~~~i~v---~G~~~~GKssli~~l~~--~~~----------~~-------~~~t~~~~~~~~~~~------------- 64 (189)
T 2x77_A 20 DRKIRVLM---LGLDNAGKTSILYRLHL--GDV----------VT-------TVPTVGVNLETLQYK------------- 64 (189)
T ss_dssp TSCEEEEE---EEETTSSHHHHHHHTCC--SCC----------EE-------ECSSTTCCEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHc--CCC----------CC-------cCCCCceEEEEEEEC-------------
Confidence 46799999 99999999999999931 111 00 112343333344443
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.+|.......++.+|++|+|+|+.+.-..+.. ..+..+.. .++|+++++||+|+.
T Consensus 65 ---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 65 ---NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp ---TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 78999999999999887777888999999999999987544332 23333333 378999999999997
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.26 E-value=2.9e-11 Score=122.45 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=74.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...-.... .. ...|+.. .+
T Consensus 10 ~~~~~i~~---~G~~g~GKTsl~~~l~~~~~~~~~--~~-------------~~~~~~~-----~~-------------- 52 (218)
T 1nrj_B 10 SYQPSIII---AGPQNSGKTSLLTLLTTDSVRPTV--VS-------------QEPLSAA-----DY-------------- 52 (218)
T ss_dssp CCCCEEEE---ECSTTSSHHHHHHHHHHSSCCCBC--CC-------------SSCEEET-----TG--------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhcCCCCCee--ee-------------cCceEEE-----Ee--------------
Confidence 45689999 999999999999999643211000 00 0001100 01
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhc----cCceEEEEeCC-C--CcchhHHHHHHHHH------hcCCccEEEEecC
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-E--GVCVQTETVLRQAL------GERIRPVLTVNKM 152 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~----~D~ailvvda~-~--gv~~qt~~~~~~~~------~~~~~~iv~iNKi 152 (794)
....+++|||||+.+|.......++. +|++|+|+|+. . ........+..... ..++|.++++||+
T Consensus 53 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 130 (218)
T 1nrj_B 53 --DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 130 (218)
T ss_dssp --GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECT
T ss_pred --eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEch
Confidence 25689999999999998888888876 89999999998 3 22222222222221 1578999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 131 Dl~ 133 (218)
T 1nrj_B 131 ELF 133 (218)
T ss_dssp TST
T ss_pred Hhc
Confidence 997
No 130
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=126.15 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=74.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+...-... ....+++|.......+.|.
T Consensus 28 ~~~~i~l---vG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~-------------- 76 (239)
T 3lxx_A 28 SQLRIVL---VGKTGAGKSATGNSILGRKVFHS--------------GTAAKSITKKCEKRSSSWK-------------- 76 (239)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHcCCCcCcc--------------CCCCCceeeeEEEEEEEeC--------------
Confidence 4689999 99999999999999963222110 1112345666555556664
Q ss_pred CCceEEEEEcCCCccc-----------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH-----hcCCccEEEEe
Q 003804 87 GNEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVN 150 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d-----------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~-----~~~~~~iv~iN 150 (794)
+..++||||||+.+ |...+..+.+.+|++|+|+|+..... .....+..+. ....|.++|+|
T Consensus 77 --~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~n 153 (239)
T 3lxx_A 77 --ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFT 153 (239)
T ss_dssp --TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred --CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEe
Confidence 78999999999754 33334445566799999999875433 3333333332 23458899999
Q ss_pred cCccc
Q 003804 151 KMDRC 155 (794)
Q Consensus 151 KiD~~ 155 (794)
|+|+.
T Consensus 154 K~D~~ 158 (239)
T 3lxx_A 154 RKDDL 158 (239)
T ss_dssp CGGGC
T ss_pred CCccC
Confidence 99986
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.25 E-value=8.5e-12 Score=141.41 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=66.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|++|+|||||+++|+.....+... ..|+|.+.....+.+.
T Consensus 233 ~~kV~i---vG~~nvGKSSLln~L~~~~~a~vs~---------------~~gtT~d~~~~~i~~~--------------- 279 (476)
T 3gee_A 233 GVSTVI---AGKPNAGKSTLLNTLLGQERAIVSH---------------MPGTTRDYIEECFIHD--------------- 279 (476)
T ss_dssp CEEEEE---ECCTTSSHHHHHHHCC---------------------------------CEEEEET---------------
T ss_pred CCEEEE---ECCCCCCHHHHHHHHhCCCCcccCC---------------CCCceEEEEEEEEEEC---------------
Confidence 578999 9999999999999995443222211 1245555554555553
Q ss_pred CceEEEEEcCCCccchHHHH--------HHhhhccCceEEEEeCCCCcch----hHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEV--------TAALRITDGALVVVDCIEGVCV----QTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~--------~~~l~~~D~ailvvda~~gv~~----qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.++||||||+.++...+ ...++.+|++|+|+|+.++... ....++..+. ++|.++|+||+|+.
T Consensus 280 -g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 280 -KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRA 356 (476)
T ss_dssp -TEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSC
T ss_pred -CeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCC
Confidence 7899999999998876443 3367899999999999998876 3333433332 68999999999997
No 132
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.25 E-value=5.5e-12 Score=127.72 Aligned_cols=126 Identities=18% Similarity=0.117 Sum_probs=79.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.++|||||+++|+... ... . ....+++......+.+...... ....+
T Consensus 24 ~~~ki~v---vG~~~~GKSsLi~~l~~~~--~~~----~----------~~~t~~~~~~~~~~~~~~~~~~----~~~~~ 80 (217)
T 2f7s_A 24 YLIKLLA---LGDSGVGKTTFLYRYTDNK--FNP----K----------FITTVGIDFREKRVVYNAQGPN----GSSGK 80 (217)
T ss_dssp EEEEEEE---ESCTTSSHHHHHHHHHCSC--CCC----E----------EEEEEEEEEEEEEEEEEC-----------CC
T ss_pred eeEEEEE---ECcCCCCHHHHHHHHhcCC--CCc----C----------CCCceeEEEEEEEEEECCcccc----ccccC
Confidence 4689999 9999999999999995211 100 0 0000111111122222210000 00001
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH-HHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~-~~~----~~~~~iv~iNKiD~~ 155 (794)
.....++||||||+.+|.......++.+|++|+|+|+.+....+....|.. +.. .++|+++|+||+|+.
T Consensus 81 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred ceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 115789999999999999999999999999999999998655554443322 221 467889999999986
No 133
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.25 E-value=3.3e-11 Score=126.84 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=75.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+...-..... ..+.|.......+.+
T Consensus 38 ~~~~I~v---vG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~--------------- 84 (270)
T 1h65_A 38 NSLTILV---MGKGGVGKSSTVNSIIGERVVSISP---------------FQSEGPRPVMVSRSR--------------- 84 (270)
T ss_dssp CEEEEEE---EESTTSSHHHHHHHHHTSCCSCCCS---------------SSCCCSSCEEEEEEE---------------
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHhCCCcccccC---------------CCCcceeeEEEEEee---------------
Confidence 5789999 9999999999999997433211111 122343333344444
Q ss_pred CCceEEEEEcCCCccchH---HHHHHhh------hccCceEEEEeCCC-CcchhHHHHHHHHHhc-C----CccEEEEec
Q 003804 87 GNEYLINLIDSPGHVDFS---SEVTAAL------RITDGALVVVDCIE-GVCVQTETVLRQALGE-R----IRPVLTVNK 151 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~---~e~~~~l------~~~D~ailvvda~~-gv~~qt~~~~~~~~~~-~----~~~iv~iNK 151 (794)
++..++||||||+.+|. ......+ +.+|++|+|+|... .........++.+... + .|.++++||
T Consensus 85 -~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 85 -AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp -TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred -CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence 37899999999998764 2222222 36899999988754 3444444555555432 3 588999999
Q ss_pred Cccc
Q 003804 152 MDRC 155 (794)
Q Consensus 152 iD~~ 155 (794)
+|+.
T Consensus 164 ~Dl~ 167 (270)
T 1h65_A 164 AQFS 167 (270)
T ss_dssp CSCC
T ss_pred cccC
Confidence 9985
No 134
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.25 E-value=1e-11 Score=133.52 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCccc-------------hHHHHHHhhhccCceEEEEeC-CCCcchhH-HHHHHHHHhcCCccEEEEecCc
Q 003804 89 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDC-IEGVCVQT-ETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 89 ~~~inlIDTPGh~d-------------f~~e~~~~l~~~D~ailvvda-~~gv~~qt-~~~~~~~~~~~~~~iv~iNKiD 153 (794)
...++||||||+.+ |...+..+++.+|++++|+|+ ..+...+. ..+++.+...+.|.++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 57899999999864 666788899999999999997 56665444 3677777778899999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 210 l~ 211 (315)
T 1jwy_B 210 LM 211 (315)
T ss_dssp SS
T ss_pred cC
Confidence 87
No 135
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.25 E-value=2.4e-11 Score=122.54 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=79.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+... ...... .|+.... ...+. .
T Consensus 7 ~~~~ki~i---~G~~~~GKTsli~~l~~~~--~~~~~~----------------~t~~~~~-~~~~~------------~ 52 (212)
T 2j0v_A 7 SKFIKCVT---VGDGAVGKTCMLICYTSNK--FPTDYI----------------PTVFDNF-SANVA------------V 52 (212)
T ss_dssp CCEEEEEE---EESTTSSHHHHHHHHHHSC--CCSSCC----------------CSSCCCE-EEEEE------------C
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCC--CCccCC----------------CccceeE-EEEEE------------E
Confidence 45789999 9999999999999996422 111000 1111111 11111 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HH-HHHHhc--CCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~-~~~~~~--~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.......++.+|++|+|+|+.+....+... .| ..+... ++|+++++||+|+.
T Consensus 53 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp SSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred CCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 234679999999999999888888999999999999999765544432 33 333332 78999999999986
No 136
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.25 E-value=8.5e-12 Score=125.43 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=80.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+...-.-.. .+ |+... ....+. .
T Consensus 28 ~~~~ki~v---vG~~~~GKSsLi~~l~~~~~~~~~--~~----------------t~~~~-~~~~~~------------~ 73 (204)
T 4gzl_A 28 GQAIKCVV---VGDGAVGKTCLLISYTTNAFPGEY--IP----------------TVFDN-YSANVM------------V 73 (204)
T ss_dssp --CEEEEE---EESTTSSHHHHHHHHHHSCCCC-C--CC----------------CSEEE-EEEEEE------------C
T ss_pred CCeEEEEE---ECcCCCCHHHHHHHHHhCCCCCCc--CC----------------eecce-eEEEEE------------E
Confidence 35689999 999999999999999643211000 11 11110 111111 2
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HH-HHHHhc--CCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~-~~~~~~--~~~~iv~iNKiD~~ 155 (794)
++..+.++||||||+.+|.......++.+|++|+|+|+.++...+... .| ..+... ++|+++|+||+|+.
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 74 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp C-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 334677889999999999988888999999999999999876665543 34 333333 78999999999997
No 137
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1e-11 Score=126.64 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=78.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.++|||||+++|+...-.... ...++.......+.+.
T Consensus 12 ~~~ki~v---~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~-------------- 58 (223)
T 3cpj_B 12 LLFKIVL---IGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFATRTLEIE-------------- 58 (223)
T ss_dssp EEEEEEE---ESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEET--------------
T ss_pred eeeEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------------
Confidence 4689999 999999999999999643211110 0111222222223332
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+..+.+.||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 59 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 59 GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp TEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred CEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 2347899999999999988888899999999999999987655554333 33333 367889999999986
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.25 E-value=9e-12 Score=140.66 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=77.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|++|+|||||+++|+.....+.....| +|.+.....+.+.
T Consensus 223 ~~~kV~i---vG~~nvGKSSLln~L~~~~~a~v~~~~g---------------tT~d~~~~~i~~~-------------- 270 (462)
T 3geh_A 223 TGLKVAI---VGRPNVGKSSLLNAWSQSDRAIVTDLPG---------------TTRDVVESQLVVG-------------- 270 (462)
T ss_dssp HCEEEEE---EECTTSSHHHHHHHHHHHHBSCCSCCTT---------------CCHHHHHHEEEET--------------
T ss_pred CCCEEEE---EcCCCCCHHHHHHHHhCCCcccccCCCC---------------eeEEEEEEEEEEC--------------
Confidence 3578999 9999999999999998766544332222 3444333344443
Q ss_pred CCceEEEEEcCCCccchHHHHH--------HhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVT--------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~--------~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.++||||||+.++...+. ..++.+|++|+|+|+.++...+...+++.+. ..|.++|+||+|+.
T Consensus 271 --g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~ 343 (462)
T 3geh_A 271 --GIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLV 343 (462)
T ss_dssp --TEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSS
T ss_pred --CEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCC
Confidence 78899999999987654433 3578899999999999998888877777654 36899999999987
No 139
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.24 E-value=1.6e-11 Score=121.03 Aligned_cols=112 Identities=20% Similarity=0.231 Sum_probs=77.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+... ... +...++|+......+.+.
T Consensus 6 ~~~~i~l---vG~~gvGKStL~~~l~~~~----------~~~------~~~~~~t~~~~~~~~~~~-------------- 52 (188)
T 2wjg_A 6 KSYEIAL---IGNPNVGKSTIFNALTGEN----------VYI------GNWPGVTVEKKEGEFEYN-------------- 52 (188)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHTTC----------EEE------EECTTSCCEEEEEEEEET--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCC----------ccc------cCCCCeeccceEEEEEeC--------------
Confidence 5689999 9999999999999995211 000 011245555544445553
Q ss_pred CCceEEEEEcCCCccchH------HHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~------~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.+|. ......++ .+|++++|+|+... ......+..+...+.|.++++||+|+.
T Consensus 53 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 53 --GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp --TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred --CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 6899999999998874 12233333 48999999998751 223344566667788999999999986
No 140
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.24 E-value=1.5e-11 Score=124.00 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=79.8
Q ss_pred CCccceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhc
Q 003804 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (794)
Q Consensus 1 ~~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (794)
|+.-....++|++ +|..|+|||||+++|+...-... ...|+.... ...+.
T Consensus 21 m~~~~~~~~ki~v---vG~~~vGKSsLi~~l~~~~~~~~------------------~~~t~~~~~-~~~~~-------- 70 (205)
T 1gwn_A 21 MDPNQNVKCKIVV---VGDSQCGKTALLHVFAKDCFPEN------------------YVPTVFENY-TASFE-------- 70 (205)
T ss_dssp ------CEEEEEE---EESTTSSHHHHHHHHHHSCCCSS------------------CCCCSEEEE-EEEEE--------
T ss_pred CCcccceeeEEEE---ECCCCCCHHHHHHHHhcCCCCCC------------------cCCccceeE-EEEEE--------
Confidence 4443456789999 99999999999999964221100 001221111 11111
Q ss_pred cccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHH-HHHHh--cCCccEEEEecCccc
Q 003804 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 81 ~~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
.++....+.||||||+.+|.......++.+|++|+|+|+......... ..| ..+.. .++|+++|+||+|+.
T Consensus 71 ----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 71 ----IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp ----SSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred ----ECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 123468899999999999988778889999999999999976544443 334 33333 367899999999987
No 141
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.24 E-value=6.7e-12 Score=127.64 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=81.9
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHc-CCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAA-GIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~-g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
.+.++|++ +|+.|+|||||+++|+... ...... ..|.|..... +.
T Consensus 13 ~~~~ki~v---~G~~~~GKSsli~~~~~~~~~~~~~~---------------t~~~~~~~~~----~~------------ 58 (221)
T 3gj0_A 13 QVQFKLVL---VGDGGTGKTTFVKRHLTGEFEKKYVA---------------TLGVEVHPLV----FH------------ 58 (221)
T ss_dssp CCEEEEEE---EECTTSSHHHHHTTBHHHHHTCEEET---------------TTTEEEEEEE----EE------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHcCCCCCCCCC---------------ccceeEEEEE----EE------------
Confidence 45789999 9999999999999965321 110000 0122222222 21
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHH-h--cCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~-~--~~~~~iv~iNKiD~~ 155 (794)
.+...+.++||||||+.+|.......++.+|++|+|+|+.++...+....|.... . .++|+++|+||+|+.
T Consensus 59 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 59 TNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp ETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred ECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 1224688999999999999888888999999999999999876665554453332 2 378999999999986
No 142
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.24 E-value=4.8e-11 Score=122.10 Aligned_cols=115 Identities=19% Similarity=0.205 Sum_probs=73.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|..|+|||||+++|+... . ...+ ..+.|.......+.+
T Consensus 27 ~~~~kI~v---vG~~~vGKSsLin~l~~~~--~--------~~~~------~~~~t~~~~~~~~~~-------------- 73 (228)
T 2qu8_A 27 PHKKTIIL---SGAPNVGKSSFMNIVSRAN--V--------DVQS------YSFTTKNLYVGHFDH-------------- 73 (228)
T ss_dssp TTSEEEEE---ECSTTSSHHHHHHHHTTTC--E--------EEEC------C-----CEEEEEEEE--------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhCCC--C--------ccCC------CCCcceeeeeeeeec--------------
Confidence 35689999 9999999999999994211 0 0011 012233332222223
Q ss_pred CCCceEEEEEcCCCccch---------HHHHHHhhhccCceEEEEeCCCCcchh---HHHHHHHHHhc--CCccEEEEec
Q 003804 86 QGNEYLINLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIEGVCVQ---TETVLRQALGE--RIRPVLTVNK 151 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df---------~~e~~~~l~~~D~ailvvda~~gv~~q---t~~~~~~~~~~--~~~~iv~iNK 151 (794)
++..+.||||||+.++ ...+....+.+|++|+|+|+.+....+ ....+..+... ++|.++|+||
T Consensus 74 --~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK 151 (228)
T 2qu8_A 74 --KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNK 151 (228)
T ss_dssp --TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEEC
T ss_pred --CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeC
Confidence 3678999999999431 112233467889999999999875533 22344555554 7899999999
Q ss_pred Cccc
Q 003804 152 MDRC 155 (794)
Q Consensus 152 iD~~ 155 (794)
+|+.
T Consensus 152 ~Dl~ 155 (228)
T 2qu8_A 152 IDKC 155 (228)
T ss_dssp GGGC
T ss_pred cccC
Confidence 9986
No 143
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=122.98 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=78.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... . .|+.... ...+. .+
T Consensus 23 ~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~----------------~t~~~~~-~~~~~------------~~ 68 (201)
T 3oes_A 23 RYRKVVI---LGYRCVGKTSLAHQFVEGEFSEGY--D----------------PTVENTY-SKIVT------------LG 68 (201)
T ss_dssp CEEEEEE---EESTTSSHHHHHHHHHHSCCCSCC--C----------------CCSEEEE-EEEEC--------------
T ss_pred CcEEEEE---ECCCCcCHHHHHHHHHhCCCCCCC--C----------------CccceEE-EEEEE------------EC
Confidence 5789999 999999999999999643211100 0 1111111 11111 12
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+..+.++||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp --CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 3478899999999999988888999999999999999976554444333 33322 367999999999986
No 144
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.23 E-value=1.9e-11 Score=122.40 Aligned_cols=115 Identities=14% Similarity=0.047 Sum_probs=79.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (794)
...++|++ +|+.|+|||||+++|+...-.... . .|+.... ..+.+
T Consensus 23 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~----------------~t~~~~~~~~~~~------------- 68 (201)
T 2gco_A 23 AIRKKLVI---VGDGACGKTCLLIVFSKDQFPEVY--V----------------PTVFENYIADIEV------------- 68 (201)
T ss_dssp CEEEEEEE---EESTTSSHHHHHHHHHHSSCCSSC--C----------------CSSCCCCEEEEEE-------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHhCcCCccc--C----------------CcccceEEEEEEE-------------
Confidence 35689999 999999999999999643221100 0 0111111 11222
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHH-HHHHhc--CCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~-~~~~~~--~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.......++.+|++|+|+|+......+.. ..| ..+... ++|+++|+||+|+.
T Consensus 69 -~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 69 -DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp -TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred -CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 22357899999999999988888899999999999999875444333 233 333333 78999999999997
No 145
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.23 E-value=3.5e-11 Score=118.55 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=79.6
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
..+.++|++ +|+.|+|||||+++|+...-.... ..|+.... ...+.
T Consensus 4 ~~~~~ki~v---~G~~~vGKSsli~~l~~~~~~~~~------------------~~t~~~~~-~~~~~------------ 49 (184)
T 1m7b_A 4 QNVKCKIVV---VGDSQCGKTALLHVFAKDCFPENY------------------VPTVFENY-TASFE------------ 49 (184)
T ss_dssp --CEEEEEE---EESTTSSHHHHHHHHHHSCCCSSC------------------CCCSEEEE-EEEEE------------
T ss_pred CceEEEEEE---ECCCCCCHHHHHHHHhcCCCCCCC------------------CCccceeE-EEEEE------------
Confidence 345789999 999999999999999653211000 01111111 11111
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHH-HHHHh--cCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
.++....+.||||||+.+|.......++.+|++|+|+|+......+.. ..| ..+.. .+.|+++++||+|+.
T Consensus 50 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 50 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp CSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred ECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 123467899999999999988788889999999999999976554443 334 33332 478999999999986
No 146
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.23 E-value=4.5e-12 Score=124.13 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=73.6
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|+.|+|||||+++|+... ......+ |+.... ...+. .
T Consensus 6 ~~~~ki~v---~G~~~~GKssl~~~~~~~~--~~~~~~~----------------t~~~~~-~~~~~------------~ 51 (182)
T 3bwd_D 6 SRFIKCVT---VGDGAVGKTCLLISYTSNT--FPTDYVP----------------TVFDNF-SANVV------------V 51 (182)
T ss_dssp -CCCEEEE---ECSTTSSHHHHHHHHHHSC--CC--------------------------C-BCCCC-------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCC--CCCCCCC----------------eeeeeE-EEEEE------------E
Confidence 45689999 9999999999999996432 1110000 110000 00000 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHH-HHHh--cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLR-QALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~-~~~~--~~~~~iv~iNKiD~~ 155 (794)
++....+.||||||+.+|.......++.+|++++|+|+.+....+... .|. .+.. .++|+++++||+|+.
T Consensus 52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp ------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 223567889999999999988888999999999999998765554433 343 3332 278999999999987
No 147
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.23 E-value=6.4e-12 Score=127.31 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=81.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|+.|+|||||+++|+... .. .....|+........+.. .
T Consensus 9 ~~~~ki~v---vG~~~~GKSsli~~l~~~~--~~----------------~~~~~t~~~~~~~~~~~~-----------~ 56 (218)
T 4djt_A 9 ELTYKICL---IGDGGVGKTTYINRVLDGR--FE----------------KNYNATVGAVNHPVTFLD-----------D 56 (218)
T ss_dssp -CEEEEEE---ECCTTSSHHHHHCBCTTCS--TT----------------CEEETTTTEEEEEEEEEB-----------T
T ss_pred cCccEEEE---ECCCCCCHHHHHHHHhcCC--CC----------------CCCCCccceeeEEEEEEe-----------C
Confidence 35689999 9999999999999984211 00 011123333333333321 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HH---HHhcCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQ---ALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~---~~~~~~~~iv~iNKiD~~ 155 (794)
++..+.++||||||+.+|.......++.+|++|+|+|+.++...+....| .. ....++|+++|+||+|+.
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 12237899999999999888888889999999999999988766655333 22 233468999999999986
No 148
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=2.5e-11 Score=120.66 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=78.7
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|+.|+|||||+++|+...- ... ...|+....... +. .
T Consensus 6 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~--~~~----------------~~~t~~~~~~~~-~~------------~ 51 (199)
T 2gf0_A 6 SNDYRVVV---FGAGGVGKSSLVLRFVKGTF--RDT----------------YIPTIEDTYRQV-IS------------C 51 (199)
T ss_dssp CCCEEEEE---EECTTSSHHHHHHHHHHSCC--CCT----------------TSCCCCEEEEEE-EE------------E
T ss_pred CCeeEEEE---ECCCCCcHHHHHHHHHcCCC--CCc----------------ccCccccceeEE-EE------------E
Confidence 34689999 99999999999999964211 100 001111111111 11 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh-----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG-----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~-----~~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.......++.+|++|+|+|+.+....+.. ..|..+.. .++|+++|+||+|+.
T Consensus 52 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 52 DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 22367899999999999998888999999999999999875443332 23333322 367999999999986
No 149
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.22 E-value=9.8e-12 Score=119.75 Aligned_cols=113 Identities=18% Similarity=0.111 Sum_probs=62.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|+ |.... ......|.+.. ..+.+ ++
T Consensus 2 ~~ki~~---vG~~~~GKSsli~~l~-----------~~~~~----~~~~~~~~~~~---~~~~~--------------~~ 46 (166)
T 3q72_A 2 VYKVLL---LGAPGVGKSALARIFG-----------GVEDG----PEAEAAGHTYD---RSIVV--------------DG 46 (166)
T ss_dssp CCEEEE---EESTTSSHHHHHHHHC-----------CC--------------CEEE---EEEEE--------------TT
T ss_pred eEEEEE---ECCCCCCHHHHHHHHc-----------Ccccc----CCCCccccceE---EEEEE--------------CC
Confidence 578999 9999999999999993 21000 00001112211 11112 23
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHHh----cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
....+.+|||||+.+|.......++.+|++++|+|+.+....+... .+..+.. .++|.++++||+|+.
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 4678999999999999888888999999999999999764433332 3344433 368999999999986
No 150
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.21 E-value=2.4e-11 Score=117.40 Aligned_cols=115 Identities=19% Similarity=0.141 Sum_probs=68.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|+........ ....+.......+.+ ++
T Consensus 2 ~~ki~i---vG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~~ 48 (169)
T 3q85_A 2 VFKVML---VGESGVGKSTLAGTFGGLQGDHAH----------------EMENSEDTYERRIMV--------------DK 48 (169)
T ss_dssp EEEEEE---ECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEE--------------TT
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHhccCcccc----------------cCCCcCCeeeEEEEE--------------CC
Confidence 478999 999999999999999522211100 000111122222222 23
Q ss_pred CceEEEEEcCCCccchHH-HHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHHh----cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~-e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
..+.+.+|||||+.+|.. .....++.+|++++|+|+.+....+... .+..+.. .++|.++++||+|+.
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 467899999999998876 3445578899999999998754433322 2233333 278999999999986
No 151
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=132.22 Aligned_cols=111 Identities=20% Similarity=0.132 Sum_probs=76.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+ +... ... ..|+......+.+
T Consensus 164 ~~~kI~i---vG~~~vGKSsLl~~l~-----------~~~~-~~~-------~pT~~~~~~~~~~--------------- 206 (329)
T 3o47_A 164 KEMRILM---VGLDAAGKTTILYKLK-----------LGEI-VTT-------IPTIGFNVETVEY--------------- 206 (329)
T ss_dssp CSEEEEE---EESTTSSHHHHHHHTC-----------SSCC-EEE-------EEETTEEEEEEEE---------------
T ss_pred CcceEEE---ECCCCccHHHHHHHHh-----------CCCC-CCc-------ccccceEEEEEec---------------
Confidence 4579999 9999999999999993 2110 000 1245444444554
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHHHHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..++||||||+.+|.......++.+|++|+|+|+.+....... ..|..+.. .++|+++|+||+|+.
T Consensus 207 -~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 207 -KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp -TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred -CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 378999999999999999899999999999999999865444332 23333322 378899999999997
No 152
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=2.4e-11 Score=122.29 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=77.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~ 85 (794)
..++|++ +|+.|+|||||+++|+...-.... ..|+.... ..+.+
T Consensus 24 ~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~-------------- 68 (207)
T 2fv8_A 24 IRKKLVV---VGDGACGKTCLLIVFSKDEFPEVY------------------VPTVFENYVADIEV-------------- 68 (207)
T ss_dssp EEEEEEE---EECTTSSHHHHHHHHHHSSCC-------------------------CCEEEEEEEE--------------
T ss_pred cCcEEEE---ECcCCCCHHHHHHHHhcCCCCCcC------------------CCcccceEEEEEEE--------------
Confidence 4689999 999999999999999643211000 00111111 11122
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHH-HHH-HHHHhc--CCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~-~~~-~~~~~~--~~~~iv~iNKiD~~ 155 (794)
++....+.||||||+.+|.......++.+|++|+|+|+......+.. ..| ..+... ++|+++|+||+|+.
T Consensus 69 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 22357899999999999988888889999999999999875443333 233 333333 78999999999997
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.21 E-value=2e-11 Score=121.05 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=80.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|+.|+|||||+++|+...-.... .+ ...+++. .+
T Consensus 47 ~~~~i~v---vG~~g~GKSsll~~l~~~~~~~~~--~~-----------~~~~~~~-------~~--------------- 88 (193)
T 2ged_A 47 YQPSIII---AGPQNSGKTSLLTLLTTDSVRPTV--VS-----------QEPLSAA-------DY--------------- 88 (193)
T ss_dssp CCCEEEE---ECCTTSSHHHHHHHHHHSSCC--------------------------------CC---------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhcCCCCccc--cc-----------CCCceee-------ee---------------
Confidence 4578999 999999999999999643211000 00 0000110 11
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhc----cCceEEEEeCCCCcch-hH-HHHHHHHHh-------cCCccEEEEecCc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCIEGVCV-QT-ETVLRQALG-------ERIRPVLTVNKMD 153 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~----~D~ailvvda~~gv~~-qt-~~~~~~~~~-------~~~~~iv~iNKiD 153 (794)
....+.+|||||+.+|.......++. +|++|+|+|+...... .. ...+..+.. .++|.++|+||+|
T Consensus 89 -~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 167 (193)
T 2ged_A 89 -DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 167 (193)
T ss_dssp -CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred -cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchH
Confidence 25678999999999887666666665 8999999999832221 11 122222221 4789999999999
Q ss_pred cchhccC-CCHHHHHHHHHHHHHHh
Q 003804 154 RCFLELQ-VDGEEAYQTFQKVIENA 177 (794)
Q Consensus 154 ~~~~~~~-~~~~~~~~~~~~~~~~~ 177 (794)
+. . ...+++.+.+++.++.+
T Consensus 168 l~----~~~~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 168 LF----TARPPSKIKDALESEIQKV 188 (193)
T ss_dssp ST----TCCCHHHHHHHHHHHHHHH
T ss_pred hc----CCCCHHHHHHHHHHHHHHH
Confidence 97 4 34566666666555543
No 154
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.21 E-value=5.6e-11 Score=120.42 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=79.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|..++|||||+++|+...-.... ..|+.... ..... .+
T Consensus 26 ~~~ki~v---vG~~~vGKSsL~~~l~~~~~~~~~------------------~~t~~~~~-~~~~~------------~~ 71 (214)
T 3q3j_B 26 ARCKLVL---VGDVQCGKTAMLQVLAKDCYPETY------------------VPTVFENY-TACLE------------TE 71 (214)
T ss_dssp -CEEEEE---ECSTTSSHHHHHHHHHHSCCCSSC------------------CCCSEEEE-EEEEE------------C-
T ss_pred ceEEEEE---ECcCCCCHHHHHHHHhcCCCCCCc------------------CCeeeeeE-EEEEE------------EC
Confidence 4689999 999999999999999643211000 01121111 11111 22
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhH-HHHH-HHHHh--cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt-~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
+..+.+.||||||+.+|.......++.+|++|+|+|+.+...... ...| ..+.. .++|+++|+||+|+.
T Consensus 72 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 72 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred CEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 346889999999999998888889999999999999998765554 3344 33333 378999999999986
No 155
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.20 E-value=2.4e-11 Score=137.75 Aligned_cols=112 Identities=19% Similarity=0.297 Sum_probs=86.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|.+|+|||||+++|+.....+..... |+|.+.....+.+.
T Consensus 243 ~~kV~i---vG~pnvGKSSLln~L~~~~~a~vs~~~---------------gTT~d~~~~~i~~~--------------- 289 (482)
T 1xzp_A 243 GLRMVI---VGKPNVGKSTLLNRLLNEDRAIVTDIP---------------GTTRDVISEEIVIR--------------- 289 (482)
T ss_dssp CEEEEE---ECCHHHHTCHHHHHHHHHTBCCCCCSS---------------CCSSCSCCEEEEET---------------
T ss_pred CCEEEE---ECcCCCcHHHHHHHHHCCCCCccCCCC---------------CeeeeeEEEEEecC---------------
Confidence 478999 999999999999999876543332222 34555544555553
Q ss_pred CceEEEEEcCCCcc-chH--------HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHV-DFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~-df~--------~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..++||||||+. ++. ..+...++.+|++|+|+|+.++...+...+|+.+ .++|.++|+||+|+.
T Consensus 290 -g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 290 -GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp -TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred -CeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 7889999999998 653 2356778999999999999998877777777665 478999999999996
No 156
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.19 E-value=1.1e-10 Score=115.49 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=74.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|..|+|||||+++|+... .... + ..|+.... ...+. .
T Consensus 19 ~~~~ki~v---vG~~~vGKTsLi~~l~~~~--~~~~---------~-------~~t~~~~~-~~~~~------------~ 64 (187)
T 3c5c_A 19 PLEVNLAI---LGRRGAGKSALTVKFLTKR--FISE---------Y-------DPNLEDTY-SSEET------------V 64 (187)
T ss_dssp -CEEEEEE---ECCTTSSHHHHHHHHHHSS--CCSC---------C-------CTTCCEEE-EEEEE------------E
T ss_pred CceEEEEE---ECCCCCcHHHHHHHHHhCC--CCcc---------c-------CCCcccee-eEEEE------------E
Confidence 35689999 9999999999999996432 1110 0 01221111 01111 1
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh------cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~------~~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.. +...++.+|++|+|+|+.+....+....| ..+.. .++|+++++||+|+.
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 65 DHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp TTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 23467899999999988865 46788999999999999976544443333 33332 478999999999986
No 157
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=1.7e-10 Score=114.77 Aligned_cols=114 Identities=17% Similarity=0.155 Sum_probs=76.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (794)
.+.++|++ +|+.|+|||||+++|+...-.... . .|+.... ..+.+
T Consensus 26 ~~~~ki~v---~G~~~vGKSsli~~l~~~~~~~~~--~----------------~t~~~~~~~~~~~------------- 71 (196)
T 2atv_A 26 SAEVKLAI---FGRAGVGKSALVVRFLTKRFIWEY--D----------------PTLESTYRHQATI------------- 71 (196)
T ss_dssp -CCEEEEE---ECCTTSSHHHHHHHHHHSCCCSCC--C----------------TTCCEEEEEEEEE-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHhCCCCccc--C----------------CCCCceEEEEEEE-------------
Confidence 34689999 999999999999999653211000 0 1111111 11112
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHH----hcCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~----~~~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+ .......++.+|++++|+|+.+.-...... .+..+. ..++|+++++||+|+.
T Consensus 72 -~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 72 -DDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp -TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred -CCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 22467899999999988 667788889999999999998743332222 222222 3578999999999986
No 158
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.18 E-value=2.8e-11 Score=120.86 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=77.1
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (794)
.+.++|++ +|+.|+|||||+++|+... .... ...|+.... ..+.+
T Consensus 18 ~~~~ki~~---~G~~~~GKssl~~~l~~~~--~~~~----------------~~~t~~~~~~~~~~~------------- 63 (201)
T 2q3h_A 18 GRGVKCVL---VGDGAVGKTSLVVSYTTNG--YPTE----------------YIPTAFDNFSAVVSV------------- 63 (201)
T ss_dssp --CEEEEE---ECSTTSSHHHHHHHHHC--------------------------CCSSEEEEEEEEE-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHHhCC--CCCC----------------CCCcccceeEEEEEE-------------
Confidence 35689999 9999999999999995322 1100 001221111 11222
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HH-HHHHh--cCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|.......++.+|++|+|+|+.+....+... .| ..+.. .++|+++|+||+|+.
T Consensus 64 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 64 -DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp -TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred -CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 223568889999999998887778899999999999999765554432 33 33333 378999999999987
No 159
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.18 E-value=3.2e-11 Score=122.10 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=64.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~ 85 (794)
+.++|++ +|+.|+|||||+++|+... ... + ...|+... ...+.+
T Consensus 33 ~~~ki~v---vG~~~vGKSsli~~l~~~~--~~~---------~-------~~~t~~~~~~~~~~~-------------- 77 (214)
T 2j1l_A 33 RSVKVVL---VGDGGCGKTSLLMVFADGA--FPE---------S-------YTPTVFERYMVNLQV-------------- 77 (214)
T ss_dssp CEEEEEE---EECTTSSHHHHHHHHHC-------------------------CCCCCEEEEEEEEE--------------
T ss_pred ceEEEEE---ECcCCCCHHHHHHHHHcCC--CCC---------C-------CCCccceeEEEEEEE--------------
Confidence 4689999 9999999999999995211 100 0 00111111 111122
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HH-HHHHh--cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....+... .| ..+.. .++|+++|+||+|+.
T Consensus 78 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 78 KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp TTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 224578999999999999988888999999999999999765544432 33 23322 378999999999997
No 160
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.18 E-value=2.4e-11 Score=132.36 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=42.7
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+++.++||||||+.++... ..+.+|++++|+|+..|...+.... ...++|.++|+||+|+.
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGD 207 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTT
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCC
Confidence 4788999999999887654 3589999999999987754332211 11256889999999987
No 161
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.17 E-value=2.4e-11 Score=127.93 Aligned_cols=110 Identities=19% Similarity=0.223 Sum_probs=75.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|++|+|||||+++|....-. .| ++ .|.|+......+ +.
T Consensus 3 ~~kI~l---vG~~nvGKSTL~n~L~g~~~~-----v~-----~~------pg~tv~~~~~~~----------------~~ 47 (272)
T 3b1v_A 3 MTEIAL---IGNPNSGKTSLFNLITGHNQR-----VG-----NW------PGVTVERKSGLV----------------KK 47 (272)
T ss_dssp CEEEEE---ECCTTSSHHHHHHHHHCCCCC-----CC-----SS------SCCCCSCEEEEC----------------TT
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHCCCCc-----cc-----CC------CCCcEEEEEEEE----------------ec
Confidence 478999 999999999999999421100 11 11 255655433221 12
Q ss_pred CceEEEEEcCCCccchH------HHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~------~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+++|||||+.+|. .-....++ .+|++++|+|++.. ......+.++...++|+++++||+|+.
T Consensus 48 -~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 48 -NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp -CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred -CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 5679999999998875 22333444 59999999999863 223344466677899999999999986
No 162
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.17 E-value=1.5e-10 Score=114.23 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=75.5
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
.+.++|++ +|..|+|||||+++|+...- .. ++. .|.......+.+
T Consensus 18 ~~~~ki~i---vG~~~vGKSsL~~~~~~~~~--~~---------~~~-------~t~~~~~~~~~~-------------- 62 (184)
T 3ihw_A 18 GPELKVGI---VGNLSSGKSALVHRYLTGTY--VQ---------EES-------PEGGRFKKEIVV-------------- 62 (184)
T ss_dssp CCEEEEEE---ECCTTSCHHHHHHHHHHSSC--CC---------CCC-------TTCEEEEEEEEE--------------
T ss_pred CCeeEEEE---ECCCCCCHHHHHHHHhcCCC--CC---------CcC-------CCcceEEEEEEE--------------
Confidence 35789999 99999999999999964221 10 000 011111112222
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++..+.+.||||||+.+|. .++.+|++++|+|+.+....+....| ..+.. .++|++++.||+|+.
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2245788999999999886 77889999999999987666653334 44443 367889999999984
No 163
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.16 E-value=2.3e-10 Score=116.33 Aligned_cols=116 Identities=20% Similarity=0.181 Sum_probs=79.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|..++|||||+.+++.. .... ....|+.......... .+
T Consensus 12 k~~Kivl---vGd~~VGKTsLi~r~~~~--~f~~----------------~~~~Tig~d~~~k~~~------------~~ 58 (216)
T 4dkx_A 12 RKFKLVF---LGEQSVGKTSLITRFMYD--SFDN----------------TYQATIGIDFLSKTMY------------LE 58 (216)
T ss_dssp -CEEEEE---ECSTTSSHHHHHHHHHHS--CCC--------------------------CEEEEEE------------CS
T ss_pred CcEEEEE---ECcCCcCHHHHHHHHHhC--CCCC----------------CcCCccceEEEEEEEE------------ec
Confidence 4689999 999999999999999631 1110 0112333222222222 23
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHH---HhcCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~---~~~~~~~iv~iNKiD~~ 155 (794)
+..+.+.||||+|+.+|.......++.+|++++|+|...........-| ..+ ...++|++||.||+|+.
T Consensus 59 ~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 4568899999999999999999999999999999999976555444333 222 23567889999999986
No 164
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.15 E-value=5.2e-11 Score=137.55 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=58.1
Q ss_pred eEEEEEcCCCccc-----------hHHHHHHhhhccCceEEEEeCCC-CcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~d-----------f~~e~~~~l~~~D~ailvvda~~-gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..++||||||+.+ |...+..+++.+|++|+|+|+.. +...++..+++.+...+.|.++|+||+|+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 4689999999986 77788889999999999999987 677888888888777788999999999987
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.13 E-value=1.5e-10 Score=123.25 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCcc-------------chHHHHHHhhhccCceE-EEEeCCCCcchhHH-HHHHHHHhcCCccEEEEecCc
Q 003804 89 EYLINLIDSPGHV-------------DFSSEVTAALRITDGAL-VVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 89 ~~~inlIDTPGh~-------------df~~e~~~~l~~~D~ai-lvvda~~gv~~qt~-~~~~~~~~~~~~~iv~iNKiD 153 (794)
...++||||||+. .+...+..+++.+|.+| +|+|+..+...+.. .+++.+...+.|.++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999964 35556777888888877 68999998877764 466776667889999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 204 l~ 205 (299)
T 2aka_B 204 LM 205 (299)
T ss_dssp GS
T ss_pred cC
Confidence 97
No 166
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.13 E-value=1.1e-10 Score=133.73 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=84.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+.++|++ +|..++|||||+++|+... +.. ...|+......+.+
T Consensus 321 ~~~ki~l---vG~~nvGKSsLl~~l~~~~--~~~-----------------~~~T~~~~~~~~~~--------------- 363 (497)
T 3lvq_E 321 KEMRILM---LGLDAAGKTTILYKLKLGQ--SVT-----------------TIPTVGFNVETVTY--------------- 363 (497)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHSS--CCC-----------------CCCCSSEEEEEEES---------------
T ss_pred cceeEEE---EcCCCCCHHHHHHHHhcCC--CCC-----------------cCCccceeEEEEEe---------------
Confidence 4689999 9999999999999996433 111 01244444444444
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HHHHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+++.++||||||+.+|.......++.+|++|+|+|+++....+... .|..+.. .++|+|+|+||+|+.
T Consensus 364 -~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 364 -KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp -SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred -CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 3789999999999999988889999999999999999876555433 2333333 478999999999997
No 167
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=115.98 Aligned_cols=116 Identities=18% Similarity=0.108 Sum_probs=76.6
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|..|+|||||+++|....+... ....++.......+.+ +
T Consensus 22 ~~~ki~v---vG~~~vGKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~ 68 (195)
T 3cbq_A 22 GIFKVML---VGESGVGKSTLAGTFGGLQGDSA----------------HEPENPEDTYERRIMV--------------D 68 (195)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHTCCEECCGG----------------GTTTSCTTEEEEEEEE--------------T
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHHhccCCcc----------------CCCCcccceEEEEEEE--------------C
Confidence 4689999 99999999999999932111110 0112222222222223 2
Q ss_pred CCceEEEEEcCCCccchHH-HHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~-e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+....+.+|||||+.+|.. .....++.+|++|+|+|+.+........-| ..+.. .++|++++.||+|+.
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 2457889999999988765 445667889999999999875443333223 33332 378999999999986
No 168
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.12 E-value=2.9e-10 Score=110.88 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=73.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccce-EEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (794)
.+.++|++ +|..|+|||||+++|+...-. . + ..|+.... ..+.+
T Consensus 5 ~~~~ki~~---vG~~~vGKTsli~~l~~~~~~--~----------~-------~~t~~~~~~~~~~~------------- 49 (178)
T 2iwr_A 5 IPELRLGV---LGDARSGKSSLIHRFLTGSYQ--V----------L-------EKTESEQYKKEMLV------------- 49 (178)
T ss_dssp CCEEEEEE---ECCGGGCHHHHHHHHHHSCCC--C----------C-------SSCSSSEEEEEEEE-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHhCCCC--C----------c-------CCCcceeEEEEEEE-------------
Confidence 46789999 999999999999999642211 0 0 01221111 11122
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHH---h---cCCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---G---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~---~---~~~~~iv~iNKiD~~ 155 (794)
++....+++|||||+.+ ...++.+|++|+|+|+.+....+....|. .+. . .++|+++++||+|+.
T Consensus 50 -~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 50 -DGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp -TTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred -CCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 22357899999999987 35678899999999999876555544432 222 2 367899999999984
No 169
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.68 E-value=9.6e-12 Score=124.73 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=79.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCccccc-ceEEEEeecchhhhhccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-TGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~ 84 (794)
.+.++|++ +|+.|+|||||+++|+... ....... |+.. ....+.
T Consensus 28 ~~~~ki~v---~G~~~~GKSsli~~l~~~~--~~~~~~~----------------t~~~~~~~~~~-------------- 72 (204)
T 3th5_A 28 GQAIKCVV---VGDGAVGKTCLLISYTTNA--FPGEYIP----------------TVFDNYSANVM-------------- 72 (204)
Confidence 35789999 9999999999999995321 1110000 1100 000111
Q ss_pred cCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HH-HHHHhc--CCccEEEEecCccc
Q 003804 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~-~~~~~~--~~~~iv~iNKiD~~ 155 (794)
.++..+.+.||||||+.+|.......++.+|++|+|+|+.+....+... .| ..+... ++|+++|+||+|+.
T Consensus 73 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 73 VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 1224567889999999999988888999999999999998876555442 33 333333 78999999999987
No 170
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.07 E-value=2.7e-10 Score=112.13 Aligned_cols=108 Identities=24% Similarity=0.309 Sum_probs=66.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
++|++ +|+.|+|||||+++|+... ... + ...++|.... .+.+
T Consensus 2 ~ki~v---~G~~~~GKSsli~~l~~~~--~~~---~-----------~~~~~t~~~~--~~~~----------------- 43 (190)
T 2cxx_A 2 ATIIF---AGRSNVGKSTLIYRLTGKK--VRR---G-----------KRPGVTRKII--EIEW----------------- 43 (190)
T ss_dssp CEEEE---EEBTTSSHHHHHHHHHSCC--CSS---S-----------SSTTCTTSCE--EEEE-----------------
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCcC--Ccc---C-----------CCCCccceeE--EEec-----------------
Confidence 57888 9999999999999995321 100 0 1124444322 2222
Q ss_pred ceEEEEEcCCC-----------ccchHHHHHHhhhc----cCceEEEEeCCCC-----------cchhHHHHHHHHHhcC
Q 003804 89 EYLINLIDSPG-----------HVDFSSEVTAALRI----TDGALVVVDCIEG-----------VCVQTETVLRQALGER 142 (794)
Q Consensus 89 ~~~inlIDTPG-----------h~df~~e~~~~l~~----~D~ailvvda~~g-----------v~~qt~~~~~~~~~~~ 142 (794)
. .+++||||| +..|.......++. ++.++.|+|+... ...++..++..+...+
T Consensus 44 ~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
T 2cxx_A 44 K-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122 (190)
T ss_dssp T-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred C-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence 1 689999999 44555555555544 4555556665431 1122334555566678
Q ss_pred CccEEEEecCccc
Q 003804 143 IRPVLTVNKMDRC 155 (794)
Q Consensus 143 ~~~iv~iNKiD~~ 155 (794)
+|.++++||+|+.
T Consensus 123 ~piilv~nK~Dl~ 135 (190)
T 2cxx_A 123 IPTIVAVNKLDKI 135 (190)
T ss_dssp CCEEEEEECGGGC
T ss_pred CceEEEeehHhcc
Confidence 9999999999997
No 171
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.00 E-value=8.6e-10 Score=108.60 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=71.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|..|+|||||+++|+...... .+ ....|+........+.. ...++
T Consensus 2 ~~kv~i---vG~~gvGKStLl~~l~~~~~~~----~~------------~~~~t~g~~~~~~~~~~---------~~~~~ 53 (184)
T 2zej_A 2 RMKLMI---VGNTGSGKTTLLQQLMKTKKSD----LG------------MQSATVGIDVKDWPIQI---------RDKRK 53 (184)
T ss_dssp -CEEEE---ESCTTSSHHHHHHHHTCC---------------------------CSEEEEEEEC----------------
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhcCCCcc----CC------------CcceeccEEeEEeeecc---------ccCCC
Confidence 468999 9999999999999994210000 00 00112221111111110 00012
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-chhHHHHH-HHHHh--cCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-~~qt~~~~-~~~~~--~~~~~iv~iNKiD~~ 155 (794)
+...+.+|||||+.+|.......++.+|++++|+|.+++. .......| ..+.. .+.|+++|.||+|+.
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 4678999999999888776677788899999999998763 22222223 22222 367888999999987
No 172
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.98 E-value=9.4e-10 Score=130.57 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=53.8
Q ss_pred eEEEEEcCCCccc---hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHH-HHHhcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVD---FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~d---f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~-~~~~~~~~~iv~iNKiD~~ 155 (794)
..++||||||+.+ ....+...++.+|++|+|+|+..+........|. .+...+.|.++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999765 3455667888999999999999988877777775 4445678989999999986
No 173
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.97 E-value=6e-10 Score=120.18 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=79.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccc-eEEEEeecchhhhhcccccc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~ 85 (794)
..++|++ +|..|+|||||+++|.... ......+ |+... ...+..
T Consensus 154 ~~~~i~i---~G~~~~GKssli~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~-------------- 198 (332)
T 2wkq_A 154 ELIKCVV---VGDGAVGKTCLLISYTTNA--FPGEYIP----------------TVFDNYSANVMV-------------- 198 (332)
T ss_dssp TCEEEEE---EESTTSSHHHHHHHHHHSC--CCCSCCC----------------CSEEEEEEEEEE--------------
T ss_pred ceeEEEE---ECCCCCChHHHHHHHHhCC--CCcccCC----------------cccceeEEEEEE--------------
Confidence 3589999 9999999999999996422 1110011 11111 111111
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHH-HH-HHHHhc--CCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~-~~-~~~~~~--~~~~iv~iNKiD~~ 155 (794)
++....++||||||+.+|.......++.+|++++|+|+.+....+... .| ..+... ++|+++++||+|+.
T Consensus 199 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 224567889999999999888888899999999999999876555432 33 333333 78999999999987
No 174
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.96 E-value=2.1e-09 Score=108.81 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=73.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|..|+|||||+++|+.....+... . . .++.+.....+.+ +
T Consensus 36 ~~~kVvl---vG~~~vGKSSLl~r~~~~~~~~~~~---------~-----~-~~g~d~~~~~i~~--------------~ 83 (211)
T 2g3y_A 36 TYYRVVL---IGEQGVGKSTLANIFAGVHDSMDSD---------C-----E-VLGEDTYERTLMV--------------D 83 (211)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHCCCCTTCCC------------------CCTTEEEEEEEE--------------T
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHhCCCCCCCc---------C-----C-ccceeeEEEEEEE--------------C
Confidence 4689999 9999999999999995322221110 0 0 0111111112222 2
Q ss_pred CCceEEEEEcCCCccc-hHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d-f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
+....+.++||+|... +.......++.+|++|+|+|..+--..+...-| ..+.. .++|+++|.||+|+.
T Consensus 84 ~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 84 GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp TEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred CeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 2356788999999876 333334456789999999999865444333333 33332 368999999999986
No 175
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.96 E-value=1.7e-09 Score=115.67 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=75.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|..|+|||||+.++. .+.... +....+.|+......+ . ..
T Consensus 1 KIvl---lGdsgvGKTSLl~~~~--~~~~~~-------------~~~~~~~Tig~~~~~v--~---------------~~ 45 (331)
T 3r7w_B 1 MVLL---MGVRRCGKSSICKVVF--HNMQPL-------------DTLYLESTSNPSLEHF--S---------------TL 45 (331)
T ss_dssp CEEE---ECSTTSSTTHHHHHHH--SCCCSG-------------GGTTCCCCCSCCCEEE--C---------------SS
T ss_pred CEEE---ECCCCCCHHHHHHHHH--cCCCCC-------------ccceecCeeeeeeEEE--c---------------cE
Confidence 4677 9999999999998652 221110 0011244555544332 1 25
Q ss_pred eEEEEEcCCCccchHH---HHHHhhhccCceEEEEeCCCCcchhHHHHHHHH----H--hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSS---EVTAALRITDGALVVVDCIEGVCVQTETVLRQA----L--GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~---e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~----~--~~~~~~iv~iNKiD~~ 155 (794)
.+++||||||+.+|.. .....++.++++|+|+|+++. ......-|... . ..++|+++++||+|+.
T Consensus 46 v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp SCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 7899999999999964 457788999999999999986 33444444322 1 2478899999999987
No 176
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.94 E-value=6.7e-10 Score=120.54 Aligned_cols=112 Identities=19% Similarity=0.151 Sum_probs=74.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
+|++ +|.+++|||||+++|....- ...++ ...|+......+.+. ..
T Consensus 160 ~V~l---vG~~nvGKSTLln~L~~~~~----------~i~~~------~ftTl~p~~g~v~~~---------------~~ 205 (342)
T 1lnz_A 160 DVGL---VGFPSVGKSTLLSVVSSAKP----------KIADY------HFTTLVPNLGMVETD---------------DG 205 (342)
T ss_dssp CEEE---ESSTTSSHHHHHHHSEEECC----------EESST------TSSCCCCCEEEEECS---------------SS
T ss_pred eeee---eCCCCCCHHHHHHHHHcCCC----------ccccC------CccccCceEEEEEeC---------------CC
Confidence 5778 99999999999999832110 11111 123555444444443 23
Q ss_pred eEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCC---CcchhH-HHHHHHHHh-----cCCccEEEEecCc
Q 003804 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---GVCVQT-ETVLRQALG-----ERIRPVLTVNKMD 153 (794)
Q Consensus 90 ~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~---gv~~qt-~~~~~~~~~-----~~~~~iv~iNKiD 153 (794)
..+.|+||||+.+ +..+..+.+..+|++|+|||++. .-..+. ..++..+.. .++|.++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 7899999999754 44556666777999999999976 222222 333444444 3679999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 286 l~ 287 (342)
T 1lnz_A 286 MP 287 (342)
T ss_dssp ST
T ss_pred CC
Confidence 87
No 177
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.93 E-value=1.6e-09 Score=108.05 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=77.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+...-.... ...++.......+.+.
T Consensus 4 ~~~kv~l---vG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~-------------- 50 (199)
T 2f9l_A 4 YLFKVVL---IGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVD-------------- 50 (199)
T ss_dssp EEEEEEE---ESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEET--------------
T ss_pred ceEEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEEC--------------
Confidence 3588999 999999999999999543211100 0011111222233332
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....+.+|||||+..|.......++.+|++++|+|.......+....| ..+.. .+.|.++++||+|+.
T Consensus 51 g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 51 GKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp TEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 2356788999999998877677778889999999999876554443333 23322 467888999999986
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=2.7e-09 Score=116.98 Aligned_cols=124 Identities=17% Similarity=0.240 Sum_probs=61.1
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+.. +... .+ ..+....+..+.+++. ...+.+. ..
T Consensus 36 ~~~~I~v---vG~~g~GKSTLln~L~~~-~~~~---~~---~~~~~~~~~~~ti~~~--~~~~~~~------------~~ 91 (361)
T 2qag_A 36 FEFTLMV---VGESGLGKSTLINSLFLT-DLYP---ER---VIPGAAEKIERTVQIE--ASTVEIE------------ER 91 (361)
T ss_dssp CEECEEE---CCCTTSCHHHHHHHHTTC-CC---------------------CEEEE--EEEEC----------------
T ss_pred CCEEEEE---EcCCCCCHHHHHHHHhCC-CCCC---CC---cccCCCcccCCceeEE--EEEEEee------------cC
Confidence 3578999 999999999999998422 1110 01 1111111222222222 2222221 11
Q ss_pred CCceEEEEEcCCCccchHHH-------HH-------Hhhhcc-------------CceEEEEeC-CCCcchhHHHHHHHH
Q 003804 87 GNEYLINLIDSPGHVDFSSE-------VT-------AALRIT-------------DGALVVVDC-IEGVCVQTETVLRQA 138 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e-------~~-------~~l~~~-------------D~ailvvda-~~gv~~qt~~~~~~~ 138 (794)
+....+++|||||+.|+... +. ..++.+ |+++++|++ ..+.......+++.+
T Consensus 92 ~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l 171 (361)
T 2qag_A 92 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 171 (361)
T ss_dssp CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT
T ss_pred CcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh
Confidence 12357999999999554321 11 333332 357777876 556665555554443
Q ss_pred HhcCCccEEEEecCccc
Q 003804 139 LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 139 ~~~~~~~iv~iNKiD~~ 155 (794)
..++|+|+|+||+|+.
T Consensus 172 -~~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 172 -HNKVNIVPVIAKADTL 187 (361)
T ss_dssp -CS-SCEEEEEECCSSS
T ss_pred -ccCCCEEEEEECCCCC
Confidence 4678999999999987
No 179
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.92 E-value=3.3e-09 Score=105.35 Aligned_cols=118 Identities=21% Similarity=0.181 Sum_probs=72.3
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|..|+|||||+++|+.....+... .. .++.+.....+.+
T Consensus 4 ~~~~kv~l---vG~~~vGKSsL~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~-------------- 51 (192)
T 2cjw_A 4 MTYYRVVL---IGEQGVGKSTLANIFAGVHDSMDSD--------------XE-VLGEDTYERTLMV-------------- 51 (192)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHHSCCC------------------G-GGCTTEEEEEEEE--------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCcCCcCcc--------------cc-ccceeEEEEEEEE--------------
Confidence 34689999 9999999999999997544432210 00 0111111122222
Q ss_pred CCCceEEEEEcCCCccc-hHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh----cCCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~d-f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~----~~~~~iv~iNKiD~~ 155 (794)
++....+.++||+|... +.......++.+|++++|+|.++--..+...-| ..+.. .++|++++.||+|+.
T Consensus 52 ~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 52 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp TTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred CCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 22356778999999765 222234456789999999999875444433333 33322 368999999999985
No 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.90 E-value=1e-08 Score=112.23 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=70.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.|++ +|++|+|||||+++|....- . .+-..+.|.+.....+.+. +
T Consensus 181 ~V~l---vG~~naGKSTLln~L~~~~~-~---------------~~~~~~~T~d~~~~~i~~~----------------g 225 (364)
T 2qtf_A 181 SIGI---VGYTNSGKTSLFNSLTGLTQ-K---------------VDTKLFTTMSPKRYAIPIN----------------N 225 (364)
T ss_dssp EEEE---ECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEET----------------T
T ss_pred EEEE---ECCCCCCHHHHHHHHHCCCc-c---------------ccCCcccccCCEEEEEEEC----------------C
Confidence 3888 99999999999999942110 0 0112345655555556664 6
Q ss_pred eEEEEEcCCCccc-----h---HHHHHHhhhccCceEEEEeCCCCc--chhHHHHH-HHHH---hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVD-----F---SSEVTAALRITDGALVVVDCIEGV--CVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~d-----f---~~e~~~~l~~~D~ailvvda~~gv--~~qt~~~~-~~~~---~~~~~~iv~iNKiD~~ 155 (794)
..+.++||||+.+ + ...+...++.+|++++|+|+.+.. .......| ..+. ..++|.++|.||+|+.
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 7899999999732 1 123445678999999999998764 22222222 2222 2467899999999987
No 181
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.90 E-value=4.8e-09 Score=105.20 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=71.9
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
+..+|++ +|+.|+|||||+++|+ |....... ....|.|.... .+.+.
T Consensus 25 ~~~~v~l---vG~~g~GKSTLl~~l~-----------g~~~~~~~---~~~~G~~~~~~--~~~~~-------------- 71 (210)
T 1pui_A 25 TGIEVAF---AGRSNAGKSSALNTLT-----------NQKSLART---SKTPGRTQLIN--LFEVA-------------- 71 (210)
T ss_dssp CSEEEEE---EECTTSSHHHHHTTTC-----------CC----------------CCEE--EEEEE--------------
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHh-----------CCCccccc---cCCCccceeeE--EEEec--------------
Confidence 3468888 9999999999999993 21000000 00123332211 12222
Q ss_pred CCceEEEEEcCCCccc----------hHHHHH---HhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCc
Q 003804 87 GNEYLINLIDSPGHVD----------FSSEVT---AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 87 ~~~~~inlIDTPGh~d----------f~~e~~---~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD 153 (794)
+ .+.++||||+.+ |...+. ...+.+|++++++|+..+.......+++.+...++|.+++.||+|
T Consensus 72 --~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D 148 (210)
T 1pui_A 72 --D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKAD 148 (210)
T ss_dssp --T-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred --C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEeccc
Confidence 2 578999999853 222222 233578999999999988776666666777778899999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 149 ~~ 150 (210)
T 1pui_A 149 KL 150 (210)
T ss_dssp GS
T ss_pred CC
Confidence 86
No 182
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.89 E-value=2.5e-09 Score=116.97 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCccc-------------hHHHHHHhhhccC-ceEEEEeCCCCcchhHH-HHHHHHHhcCCccEEEEecCc
Q 003804 89 EYLINLIDSPGHVD-------------FSSEVTAALRITD-GALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 89 ~~~inlIDTPGh~d-------------f~~e~~~~l~~~D-~ailvvda~~gv~~qt~-~~~~~~~~~~~~~iv~iNKiD 153 (794)
...++||||||..+ +...+...++.++ .+++|+|+..+...+.. .+++.+...+.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46899999999642 3344555665555 45557788777776665 366777677889999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 209 l~ 210 (353)
T 2x2e_A 209 LM 210 (353)
T ss_dssp GS
T ss_pred cc
Confidence 97
No 183
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.88 E-value=2.7e-09 Score=123.32 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=78.8
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccccc
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (794)
...++|++ +|..|+|||||+++|.... ... ....|+.....+..... ...+.-..
T Consensus 39 ~~~~kV~l---vG~~~vGKSSLl~~l~~~~--~~~----------------~~~~t~g~~~~~~~~~~----~~~v~~~~ 93 (535)
T 3dpu_A 39 LQEIKVHL---IGDGMAGKTSLLKQLIGET--FDP----------------KESQTHGLNVVTKQAPN----IKGLENDD 93 (535)
T ss_dssp CCEEEEEE---ESSSCSSHHHHHHHHHC-----------------------------CCCEEEEEGGG----SGGGTTCS
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHhcCC--CCC----------------CCCCccceEEEEecccc----ccceeecC
Confidence 34689999 9999999999999995211 000 01112222221111000 00001112
Q ss_pred CCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc--CCccEEEEecCccc
Q 003804 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~--~~~~iv~iNKiD~~ 155 (794)
++++..++++||||+..|.......++.+|++|+|+|+..+ ......+..+... +.|.|+|+||+|+.
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp TTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred CCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 33578999999999999888778888999999999999865 3334445555554 48999999999986
No 184
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.86 E-value=9.1e-09 Score=112.67 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=72.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|+... . ...+ ..+.|.......+.+
T Consensus 166 ~~~~v~l---vG~~gvGKSTLin~L~~~~---~-------~~~~------~~~~t~~~~~~~~~~--------------- 211 (357)
T 2e87_A 166 EIPTVVI---AGHPNVGKSTLLKALTTAK---P-------EIAS------YPFTTRGINVGQFED--------------- 211 (357)
T ss_dssp SSCEEEE---ECSTTSSHHHHHHHHCSSC---C-------EEEC------CTTCSSCEEEEEEEE---------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCC---C-------ccCC------CCCeeeceeEEEEEe---------------
Confidence 4578889 9999999999999993211 0 0000 112333333333333
Q ss_pred CCceEEEEEcCCCccchH--------HHHHHhh-hccCceEEEEeCCCCc--chhHH-HHHHHHHh--cCCccEEEEecC
Q 003804 87 GNEYLINLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGV--CVQTE-TVLRQALG--ERIRPVLTVNKM 152 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~--------~e~~~~l-~~~D~ailvvda~~gv--~~qt~-~~~~~~~~--~~~~~iv~iNKi 152 (794)
.+..+.+|||||+.++. .....++ ..+|++++|+|+..+. ..+.. ..+..+.. .+.|.++++||+
T Consensus 212 -~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~ 290 (357)
T 2e87_A 212 -GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKI 290 (357)
T ss_dssp -TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCT
T ss_pred -cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 26789999999986642 1222233 3689999999987643 33332 33344433 278999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 291 Dl~ 293 (357)
T 2e87_A 291 DVA 293 (357)
T ss_dssp TTC
T ss_pred ccC
Confidence 987
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.85 E-value=5e-09 Score=114.88 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCccch-------------HHHHHHhhhccCceEEEEeCCC-Ccc-hhHHHHHHHHHhcCCccEEEEecCc
Q 003804 89 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVDCIE-GVC-VQTETVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 89 ~~~inlIDTPGh~df-------------~~e~~~~l~~~D~ailvvda~~-gv~-~qt~~~~~~~~~~~~~~iv~iNKiD 153 (794)
...+.||||||..++ ...+..+++.+|++|+|||+.. ... .....+++.+...+.|.|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567999999998877 5567788899999999998753 222 2224455555566789999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 215 l~ 216 (360)
T 3t34_A 215 LM 216 (360)
T ss_dssp GC
T ss_pred cC
Confidence 87
No 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.78 E-value=1.1e-08 Score=101.36 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=76.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (794)
..++|++ +|+.|+|||||+++|....-.... ...++.......+.+.
T Consensus 28 ~~~kv~l---vG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~-------------- 74 (191)
T 1oix_A 28 YLFKVVL---IGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVD-------------- 74 (191)
T ss_dssp EEEEEEE---EECTTSSHHHHHHHHHHSCCCCSC----------------CCCCSEEEEEEEEEET--------------
T ss_pred cceEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEEC--------------
Confidence 4689999 999999999999999543211110 0011111122223332
Q ss_pred CCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHH-HHHHh---cCCccEEEEecCccc
Q 003804 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (794)
Q Consensus 87 ~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~-~~~~~---~~~~~iv~iNKiD~~ 155 (794)
+....+.++||||+..|...+...++.+|++++|+|.......+....| ..+.. .+.|.++++||+|+.
T Consensus 75 g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 75 GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp TEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 2345677899999998887777788889999999999875443332223 22222 356888999999986
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.76 E-value=7.4e-09 Score=114.71 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCccchHH-------HHHHhhhccCceEEEEeCCCC
Q 003804 89 EYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEG 126 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~-------e~~~~l~~~D~ailvvda~~g 126 (794)
...++||||||+.++.. .....++.+|++++|+|+.++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 46799999999865321 222457899999999999876
No 188
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.67 E-value=4.5e-08 Score=115.56 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCccc-------------hHHHHHHhh-hccCceEEEEeCCCCcchhHH-HHHHHHHhcCCccEEEEecCc
Q 003804 89 EYLINLIDSPGHVD-------------FSSEVTAAL-RITDGALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 153 (794)
Q Consensus 89 ~~~inlIDTPGh~d-------------f~~e~~~~l-~~~D~ailvvda~~gv~~qt~-~~~~~~~~~~~~~iv~iNKiD 153 (794)
...+.||||||... +...+...+ ..+|.+++|+|+..+...+.. .+++.+...+.|.|+|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 45799999999654 222333444 478999999999998887776 678888888899999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 229 lv 230 (772)
T 3zvr_A 229 LM 230 (772)
T ss_dssp SS
T ss_pred cC
Confidence 87
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.66 E-value=1.7e-08 Score=110.43 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=44.6
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.++.+.||||||... .....+..+|.+|+|+|+..+...+... .. ...+|.++|+||+|+.
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~~--~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--KG--VLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--TT--SGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--Hh--HhhcCCEEEEECCCCc
Confidence 478899999999654 2234458999999999998776554322 11 1235899999999987
No 190
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.61 E-value=5.3e-08 Score=106.48 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=77.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
..|+| +|.+++|||||.++|....-.+. + ..+.|++.....+.+.
T Consensus 73 a~V~i---vG~PNvGKSTL~n~Lt~~~~~v~----------~------~pftT~~~~~g~~~~~---------------- 117 (376)
T 4a9a_A 73 ASVGF---VGFPSVGKSTLLSKLTGTESEAA----------E------YEFTTLVTVPGVIRYK---------------- 117 (376)
T ss_dssp EEEEE---ECCCCHHHHHHHHHHHSBCCCGG----------G------TCSSCCCEEEEEEEET----------------
T ss_pred CeEEE---ECCCCCCHHHHHHHHhCCCCccc----------C------CCCceeeeeeEEEEeC----------------
Confidence 47888 99999999999999943221111 1 1245666666666664
Q ss_pred ceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh-----cCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~-----~~~~~iv~iNKiD~~ 155 (794)
+..|.|+||||..+ ....+...++.||.+++|||+.+.+. +-..+...+.. ...|.++++||+|+.
T Consensus 118 ~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 118 GAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp TEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 78999999999754 23457788899999999999987542 22223333333 245889999999984
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.59 E-value=3.1e-08 Score=112.48 Aligned_cols=134 Identities=17% Similarity=0.173 Sum_probs=73.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCc-ee--ecCC---------hhhHhhhCcccccceEEEEeecc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD-VR--MTDT---------RQDEAERGITIKSTGISLYYEMT 74 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~-~~--~~D~---------~~~E~~rgiTi~~~~~~~~~~~~ 74 (794)
+...|++ +|+.|+|||||+++|++.... .|. +. ..|. .......++++..... ..+
T Consensus 100 ~~~vI~i---vG~~GvGKTTl~~kLA~~l~~-----~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~----~~d 167 (504)
T 2j37_W 100 KQNVIMF---VGLQGSGKTTTCSKLAYYYQR-----KGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYT----EMD 167 (504)
T ss_dssp --EEEEE---ECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCC----CSC
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEeccccchhHHHHHHHHhhccCceEEccCC----CCC
Confidence 3567888 999999999999999865321 121 00 1111 0111233443221100 000
Q ss_pred h-hhhhccccccCCCceEEEEEcCCCcc----chHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-E
Q 003804 75 D-AALKSYRGERQGNEYLINLIDSPGHV----DFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-V 146 (794)
Q Consensus 75 ~-~~~~~~~~~~~~~~~~inlIDTPGh~----df~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-i 146 (794)
. .............++.++||||||.. ++..++....+ .+|.+++|||+..|.. ....++.... .+|+ +
T Consensus 168 p~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~g 244 (504)
T 2j37_W 168 PVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVAS 244 (504)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCC
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceE
Confidence 0 00000000111146789999999986 34455443333 7899999999999854 2223333222 2674 7
Q ss_pred EEEecCccc
Q 003804 147 LTVNKMDRC 155 (794)
Q Consensus 147 v~iNKiD~~ 155 (794)
+++||+|..
T Consensus 245 vVlNK~D~~ 253 (504)
T 2j37_W 245 VIVTKLDGH 253 (504)
T ss_dssp EEEECTTSC
T ss_pred EEEeCCccc
Confidence 999999986
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.56 E-value=2.9e-08 Score=100.43 Aligned_cols=132 Identities=16% Similarity=0.139 Sum_probs=68.9
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCccc-----ccCCceeecCChhhHhh-hCcccccceEEEEeecchhhhhcc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ-----EVAGDVRMTDTRQDEAE-RGITIKSTGISLYYEMTDAALKSY 81 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~-----~~~G~~~~~D~~~~E~~-rgiTi~~~~~~~~~~~~~~~~~~~ 81 (794)
..+|++ +|+.|+|||||+++|+...+...+ .+.|. ..| ....+ .|+++..-.....+..........
T Consensus 30 ~~~i~i---~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (221)
T 2wsm_A 30 TVAVNI---MGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KAD--YERVRRFGIKAEAISTGKECHLDAHMIYHR 102 (221)
T ss_dssp CEEEEE---EECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHH--HHHHHTTTCEEEECCCTTCSSCCHHHHHTT
T ss_pred ceEEEE---EcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chh--HHHHHhCCCcEEEecCCceeecccHHHHHH
Confidence 468888 999999999999999876432111 01110 111 11111 133210000000000000000000
Q ss_pred ccccCCCceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 82 ~~~~~~~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.. ...+..+.+|||||..+--.. .-...+.+++|+|+..+... .|......+.|.++++||+|+.
T Consensus 103 ~~--~~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 103 LK--KFSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GG--GGTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred HH--hcCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 00 224678999999995221100 01246789999999887532 3333334568999999999986
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.51 E-value=7e-08 Score=100.45 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=29.8
Q ss_pred ccCceEEEEeCCCC--cchhHHHHH-HHH----HhcCCccEEEEecCccc
Q 003804 113 ITDGALVVVDCIEG--VCVQTETVL-RQA----LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 113 ~~D~ailvvda~~g--v~~qt~~~~-~~~----~~~~~~~iv~iNKiD~~ 155 (794)
.+|++|+|+|+.+. -.......| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 68999999999876 444433223 222 23578999999999986
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.48 E-value=1.1e-07 Score=98.95 Aligned_cols=66 Identities=20% Similarity=0.075 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCccchHH------HHHHhhhccCceEEEEeCCCCcchhHHH-HH----HHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVCVQTET-VL----RQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~------e~~~~l~~~D~ailvvda~~gv~~qt~~-~~----~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+.+.||||||..++.. .+..++.. +.+|+|+|+..+....... .+ ......++|.++++||+|+.
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 46899999999987642 23345555 8888899987665544322 11 22234578999999999986
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.41 E-value=5.6e-07 Score=99.88 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=67.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.|++ +|+.|+|||||+++|. +... ...++ ...|+......+.+. ..
T Consensus 159 ~VgL---VG~~gAGKSTLL~~Ls---g~~~-------~i~~~------~ftTl~p~~G~V~~~---------------~~ 204 (416)
T 1udx_A 159 DVGL---VGYPNAGKSSLLAAMT---RAHP-------KIAPY------PFTTLSPNLGVVEVS---------------EE 204 (416)
T ss_dssp SEEE---ECCGGGCHHHHHHHHC---SSCC-------EECCC------TTCSSCCEEEEEECS---------------SS
T ss_pred EEEE---ECCCCCcHHHHHHHHH---cCCc-------cccCc------ccceecceeeEEEec---------------Cc
Confidence 3567 9999999999999993 2110 11111 112333333333332 13
Q ss_pred eEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh-----cCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~-----~~~~~iv~iNKiD~~ 155 (794)
..++++||||+.+ +.....+.+..+|.++.|+|+......+....+++... ...|.++++||+|..
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 6899999999854 22334455667999999999972111122222233322 256999999999987
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.39 E-value=6.7e-07 Score=97.37 Aligned_cols=61 Identities=21% Similarity=0.144 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.++.+.||||||..+-. ......+|.+++|+|+..|...+... .. -...|.++++||+|+.
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~~--il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--RG--IIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--HH--HHhcCCEEEEeeecCC
Confidence 46789999999964322 23357899999999998875333211 11 1356889999999987
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.38 E-value=1.5e-06 Score=96.56 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=61.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||++.|+...-.... .|.. ..+. .-|+....+.+.+. ..+
T Consensus 31 sf~I~l---vG~sGaGKSTLln~L~g~~~~~~~--~~~~-~~~~-------~~t~~~~~i~~v~q------------~~~ 85 (418)
T 2qag_C 31 EFTLMV---VGESGLGKSTLINSLFLTDLYSPE--YPGP-SHRI-------KKTVQVEQSKVLIK------------EGG 85 (418)
T ss_dssp CEEEEE---ECCTTSSHHHHHHHHTTCCCCCCC--CCSC-C------------CCEEEEEECC-----------------
T ss_pred CEEEEE---ECCCCCcHHHHHHHHhCCCCCCCC--CCCc-ccCC-------ccceeeeeEEEEEe------------cCC
Confidence 467888 999999999999999421110000 1100 0000 01221111111111 011
Q ss_pred CceEEEEEcCCCccchHH------HH--------H----------Hh-hhcc--CceEEEEeCC-CCcchhHHHHHHHHH
Q 003804 88 NEYLINLIDSPGHVDFSS------EV--------T----------AA-LRIT--DGALVVVDCI-EGVCVQTETVLRQAL 139 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~------e~--------~----------~~-l~~~--D~ailvvda~-~gv~~qt~~~~~~~~ 139 (794)
....++++||||..++.. .+ . ++ ++.+ |.+|++++++ .|..+....+++.+.
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~ 165 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH 165 (418)
T ss_dssp -CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT
T ss_pred cccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh
Confidence 234789999999876531 11 1 11 1223 3355666665 688777766666654
Q ss_pred hcCCccEEEEecCccc
Q 003804 140 GERIRPVLTVNKMDRC 155 (794)
Q Consensus 140 ~~~~~~iv~iNKiD~~ 155 (794)
.++++|+|+||+|+.
T Consensus 166 -~~v~iIlVinK~Dll 180 (418)
T 2qag_C 166 -EKVNIIPLIAKADTL 180 (418)
T ss_dssp -TTSEEEEEEESTTSS
T ss_pred -ccCcEEEEEEcccCc
Confidence 488999999999986
No 198
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.35 E-value=2.1e-06 Score=89.94 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=70.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.+++++ +|+.|+|||||++.|+...... .|+...... +. .-+.....+.+.+.. ..
T Consensus 2 ~f~v~l---vG~nGaGKSTLln~L~g~~~~~----~G~i~~~g~-~i----~~~~~~~~i~~v~q~------------~~ 57 (270)
T 3sop_A 2 DFNIMV---VGQSGLGKSTLVNTLFKSQVSR----KASSWNREE-KI----PKTVEIKAIGHVIEE------------GG 57 (270)
T ss_dssp EEEEEE---EESSSSSHHHHHHHHHHHHC-----------------C----CCCCSCCEEEESCC---------------
T ss_pred eeEEEE---ECCCCCCHHHHHHHHhCCCCCC----CCccccCCc-cc----CcceeeeeeEEEeec------------CC
Confidence 478888 9999999999999996543211 222111000 00 001111112222210 00
Q ss_pred CceEEEEEcCCCccch-------------HH-----HHHHh----------hhccCceEEEEeCC-CCcchhHHHHHHHH
Q 003804 88 NEYLINLIDSPGHVDF-------------SS-----EVTAA----------LRITDGALVVVDCI-EGVCVQTETVLRQA 138 (794)
Q Consensus 88 ~~~~inlIDTPGh~df-------------~~-----e~~~~----------l~~~D~ailvvda~-~gv~~qt~~~~~~~ 138 (794)
-...++++|+||..+. .. ..... +..++.+++++|.. +|..+....+++.+
T Consensus 58 ~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L 137 (270)
T 3sop_A 58 VKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHL 137 (270)
T ss_dssp -CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHH
T ss_pred CcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHH
Confidence 1236899999996431 11 11111 12357889999955 89999998888888
Q ss_pred HhcCCccEEEEecCccc
Q 003804 139 LGERIRPVLTVNKMDRC 155 (794)
Q Consensus 139 ~~~~~~~iv~iNKiD~~ 155 (794)
... ++.|+++||+|..
T Consensus 138 ~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 138 SKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HTT-SEEEEEETTGGGS
T ss_pred Hhc-CcEEEEEeccccC
Confidence 776 8999999999987
No 199
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.33 E-value=5.2e-07 Score=98.07 Aligned_cols=96 Identities=24% Similarity=0.161 Sum_probs=56.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcc---cccc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY---RGER 85 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~---~~~~ 85 (794)
++|++ +|.+|+|||||+++|....-.+.. ..+.|+......+.++. .+...+ ....
T Consensus 3 ~kI~I---VG~pnvGKSTL~n~Lt~~~~~v~~----------------~p~tTi~p~~g~v~~~~--~r~~~l~~~~~~~ 61 (363)
T 1jal_A 3 FKCGI---VGLPNVGKSTLFNALTKAGIEAAN----------------YPFCTIEPNTGVVPMPD--PRLDALAEIVKPE 61 (363)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCC--HHHHHHHHHHCCS
T ss_pred CEEEE---ECCCCCCHHHHHHHHHCCCCcccC----------------CCCceECceEEEEecCC--cccceeeeeeccc
Confidence 57888 999999999999999653311110 01123333222223321 000000 0000
Q ss_pred CCCceEEEEEcCCCccchHH-------HHHHhhhccCceEEEEeCCC
Q 003804 86 QGNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 86 ~~~~~~inlIDTPGh~df~~-------e~~~~l~~~D~ailvvda~~ 125 (794)
......++||||||..++.. .....++.+|++++|+|+.+
T Consensus 62 ~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 62 RILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 01135799999999988753 24556799999999999987
No 200
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.28 E-value=2.2e-06 Score=92.23 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCC----------Cc-chhHHHHHHHHHh----cCCccEEEEecC
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------GV-CVQTETVLRQALG----ERIRPVLTVNKM 152 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~----------gv-~~qt~~~~~~~~~----~~~~~iv~iNKi 152 (794)
++..+.+|||+|+..|.......++.++++|+|+|.++ -- .......|..+.. .++|+++|.||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 46889999999999999999999999999999999972 11 1122344555443 467899999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 239 DL~ 241 (340)
T 4fid_A 239 DLF 241 (340)
T ss_dssp HHH
T ss_pred hhh
Confidence 986
No 201
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.23 E-value=3.1e-06 Score=90.82 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCC-------CCcc----hhHHHHHHHHHh----cCCccEEEEecC
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI-------EGVC----VQTETVLRQALG----ERIRPVLTVNKM 152 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~-------~gv~----~qt~~~~~~~~~----~~~~~iv~iNKi 152 (794)
++..+.+|||+|+..|..-....++.++++|+|+|.+ +.-. ......|+.+.. .++|+++|.||.
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 4688999999999999999999999999999999765 2111 123344555543 467899999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 245 DL~ 247 (327)
T 3ohm_A 245 DLL 247 (327)
T ss_dssp HHH
T ss_pred hhh
Confidence 986
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.22 E-value=9.2e-06 Score=88.73 Aligned_cols=96 Identities=21% Similarity=0.198 Sum_probs=56.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcccc--ccC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--ERQ 86 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~ 86 (794)
++|++ +|.+|+|||||+++|....-.+... . +.|+........+.. .++..... ...
T Consensus 2 ~~v~I---VG~pnvGKSTL~n~L~~~~~~v~~~-p---------------~~Ti~pn~g~~~v~~--~~l~~~~~~~~~~ 60 (368)
T 2dby_A 2 LAVGI---VGLPNVGKSTLFNALTRANALAANY-P---------------FATIDKNVGVVPLED--ERLYALQRTFAKG 60 (368)
T ss_dssp CSEEE---ECCSSSSHHHHHHHHHHHHTTCSSC-C---------------GGGGSTTEEEEECCC--HHHHHHHHHHCBT
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCCCCcccCC-C---------------CceeccceeeEecCh--HHHHHHHHHhccc
Confidence 35778 9999999999999997653111110 0 113333222222210 00000000 000
Q ss_pred -----CCceEEEEEcCCCccchH-------HHHHHhhhccCceEEEEeCCC
Q 003804 87 -----GNEYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 87 -----~~~~~inlIDTPGh~df~-------~e~~~~l~~~D~ailvvda~~ 125 (794)
..+..+.||||||..++. ......++.+|++++|+|+.+
T Consensus 61 ~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 124689999999997752 345677899999999999986
No 203
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.17 E-value=4.4e-06 Score=92.46 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=29.5
Q ss_pred ceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 116 GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 116 ~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++++|+|+.+|.......+++.+. .++|+|+++||+|.+
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAI 189 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGS
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhcc
Confidence 366788888999888887777764 788999999999987
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.17 E-value=7.2e-06 Score=87.31 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=60.9
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.++|++ +|+.|+|||||+++|+... +.. ..| ... +..+ .. .|+......+.+. ..+
T Consensus 18 ~~~I~l---vG~nG~GKSTLl~~L~g~~--~~~-~~g-i~~-~g~~--~~--~t~~~~~~~~~~q------------~~~ 73 (301)
T 2qnr_A 18 EFTLMV---VGESGLGKSTLINSLFLTD--LYP-ERV-ISG-AAEK--IE--RTVQIEASTVEIE------------ERG 73 (301)
T ss_dssp CEEEEE---EEETTSSHHHHHHHHHC---------------------------------CEEEEC---------------
T ss_pred CEEEEE---ECCCCCCHHHHHHHHhCCC--ccC-CCC-ccc-CCcc--cC--CcceEeeEEEEec------------CCC
Confidence 478888 9999999999999984221 110 011 000 0000 00 0111111222221 112
Q ss_pred CceEEEEEcCCCc-------cchHHHHH-------HhhhccC-------------ceEEEEeCCC-CcchhHHHHHHHHH
Q 003804 88 NEYLINLIDSPGH-------VDFSSEVT-------AALRITD-------------GALVVVDCIE-GVCVQTETVLRQAL 139 (794)
Q Consensus 88 ~~~~inlIDTPGh-------~df~~e~~-------~~l~~~D-------------~ailvvda~~-gv~~qt~~~~~~~~ 139 (794)
....++++||||. ..|...+. ..++.+. .+++++++.. |..+....+++.+
T Consensus 74 ~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l- 152 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI- 152 (301)
T ss_dssp CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH-
T ss_pred cccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH-
Confidence 2468999999998 33322221 3333322 2555566544 5777666565554
Q ss_pred hcCCccEEEEecCccc
Q 003804 140 GERIRPVLTVNKMDRC 155 (794)
Q Consensus 140 ~~~~~~iv~iNKiD~~ 155 (794)
..+++.++++||.|+.
T Consensus 153 ~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 153 HNKVNIVPVIAKADTL 168 (301)
T ss_dssp TTTSCEEEEECCGGGS
T ss_pred HhcCCEEEEEEeCCCC
Confidence 3467899999999987
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.95 E-value=6.4e-06 Score=90.40 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=50.8
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcc---cc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY---RG 83 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~---~~ 83 (794)
...+|++ +|.+|+|||||+++|....-.+. ...+.|+......+.+.. .+...+ ..
T Consensus 21 ~~~kvgI---VG~pnvGKSTL~n~Ltg~~~~~~----------------~~p~tTi~p~~g~v~v~~--~r~~~l~~~~~ 79 (396)
T 2ohf_A 21 TSLKIGI---VGLPNVGKSTFFNVLTNSQASAE----------------NFPFCTIDPNESRVPVPD--ERFDFLCQYHK 79 (396)
T ss_dssp SCCCEEE---ECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCC--HHHHHHHHHHC
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHHCCCcccc----------------CCCccccCceeEEEEECC--ccceeeccccC
Confidence 3467888 99999999999999953211000 012234444433333321 000000 00
Q ss_pred ccCCCceEEEEEcCCCccchHH-------HHHHhhhccCceEEEEeCCC
Q 003804 84 ERQGNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 84 ~~~~~~~~inlIDTPGh~df~~-------e~~~~l~~~D~ailvvda~~ 125 (794)
....-...+.+|||||...+.. .....++.+|++++|||+.+
T Consensus 80 p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 80 PASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 0001134699999999987654 46678899999999999974
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.94 E-value=9.9e-07 Score=96.77 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=66.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+|++ +|.+|+|||||+|+|+.....-.. .....+ ..|.|..... +.+
T Consensus 163 ~~i~~---vG~~nvGKStliN~L~~~~~~~~~----~~~~~~------~~gtT~~~~~--~~~----------------- 210 (369)
T 3ec1_A 163 GDVYV---VGCTNVGKSTFINRIIEEATGKGN----VITTSY------FPGTTLDMIE--IPL----------------- 210 (369)
T ss_dssp SCEEE---ECCTTSSHHHHHHHHHHHHHHTTC----CCEEEE------CTTSSCEEEE--EEC-----------------
T ss_pred CcEEE---EcCCCCchHHHHHHHHhhccCCcc----ceeecC------CCCeEEeeEE--EEe-----------------
Confidence 46788 999999999999999865210000 000111 1234443322 222
Q ss_pred ceEEEEEcCCCccchH-------HHHHHhh---hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFS-------SEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~-------~e~~~~l---~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..++++||||..+.. .+....+ +..|.+++++|+...........+.++...+.|.++++||+|..
T Consensus 211 ~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 211 ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccc
Confidence 2237999999975422 1222333 67899999999953211111111233344577889999999986
No 207
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.91 E-value=1.5e-05 Score=89.03 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=42.6
Q ss_pred CceEEEEEcCCCccchHHHHHHh------hhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~------l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~ 155 (794)
.++.+.||||||...+...+..+ +..+|.+++|+|+..|.. .....+.. ..+++. -+++||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f-~~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAF-NEALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHH-HHHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHH-hccCCCeEEEEecCCCC
Confidence 46789999999987654444333 346789999999987732 22222221 223553 4899999975
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.90 E-value=9.9e-06 Score=90.07 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=43.4
Q ss_pred CceEEEEEcCCCccc------hHHHHHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVD------FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~d------f~~e~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.++.+.||||||... +..++....+ ..|.+++|+|+..|-.. ..+.+.....-.+..+++||+|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc
Confidence 467899999999644 5555554333 35899999999977332 223333222223566999999975
No 209
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.89 E-value=1.6e-05 Score=88.84 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=42.7
Q ss_pred CceEEEEEcCCCccch----HHHHHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCC-c-cEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDF----SSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERI-R-PVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df----~~e~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~-~-~iv~iNKiD~~ 155 (794)
.++.+.||||||.... ..++.... ..+|.+++|+|+..|. ......+. ...++ + ..+++||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKA-FKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHH-HHTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHH-HhhcccCCeEEEEeCCCCc
Confidence 4678999999997653 33332222 2579999999998774 22222222 23346 6 56999999975
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.86 E-value=2.2e-05 Score=83.35 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=43.4
Q ss_pred CceEEEEEcCCCccc--hHHHHH------HhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVD--FSSEVT------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~d--f~~e~~------~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~ 155 (794)
+++.+.||||||... ...... ..+..+|.+++|+|+..| .+.....+.... .++ ..+++||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 467899999999876 332222 345578999999999865 223333333322 467 45899999975
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.85 E-value=2.5e-05 Score=86.82 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCccc----hHHHHH--HhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccc
Q 003804 88 NEYLINLIDSPGHVD----FSSEVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~d----f~~e~~--~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~ 155 (794)
.++.+.||||||... ...++. .....+|.+++|+||..|... ....+.. ...+++ .+++||+|..
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f-~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAF-KEATPIGSIIVTKLDGS 252 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHH-HHSCTTEEEEEECCSSC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHH-HhhCCCeEEEEECCCCc
Confidence 457899999999643 233322 223357999999999976322 2222322 223444 5899999986
No 212
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.84 E-value=3e-06 Score=91.79 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.++.+.||||||..+-.. .....+|.+++|+|+..|...+. +...+ ..++.++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhcc
Confidence 467899999999764221 23468999999999875532111 00001 123678889999975
No 213
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.82 E-value=2.2e-05 Score=85.31 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-----------chhHHHHHHHHHh----cCCccEEEEecCc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 153 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-----------~~qt~~~~~~~~~----~~~~~iv~iNKiD 153 (794)
+..+.+|||+|+..|.......++.+|++|+|+|.++-. .......|..+.. .++|+|+|.||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 789999999999999999999999999999999998732 1223344555544 4679999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 272 L~ 273 (353)
T 1cip_A 272 LF 273 (353)
T ss_dssp HH
T ss_pred ch
Confidence 85
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.80 E-value=3.3e-06 Score=92.57 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=64.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCc-ccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i-~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
.+|++ +|.+|+|||||+|+|+.....- ... ....+ ..|.|..... +.+
T Consensus 161 ~~i~~---vG~~nvGKStliN~L~~~~~~~~~~~----~~~~~------~~gtT~~~~~--~~~---------------- 209 (368)
T 3h2y_A 161 KDVYV---VGCTNVGKSTFINRMIKEFSDETENV----ITTSH------FPGTTLDLID--IPL---------------- 209 (368)
T ss_dssp SCEEE---EEBTTSSHHHHHHHHHHHHTTSCSSC----CEEEC------CC----CEEE--EES----------------
T ss_pred ceEEE---ecCCCCChhHHHHHHHhhhccccccc----eecCC------CCCeecceEE--EEe----------------
Confidence 46778 9999999999999998763211 110 00111 1234433222 222
Q ss_pred CceEEEEEcCCCccchH-------HHHHHh---hhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFS-------SEVTAA---LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~-------~e~~~~---l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..+.++||||..+.. .+.... ....+.+++++|+...........+.++...+.|.++++||+|..
T Consensus 210 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 210 -DEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp -SSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred -cCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccc
Confidence 1238899999975422 222222 356789999999843211111111223334577899999999986
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.67 E-value=4.2e-05 Score=83.36 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc----------c-hhHHHHHHHHHh----cCCccEEEEecC
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV----------C-VQTETVLRQALG----ERIRPVLTVNKM 152 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv----------~-~qt~~~~~~~~~----~~~~~iv~iNKi 152 (794)
++..+.+|||+|+..|.......++.++++|+|+|.++-. . ......|..+.. .++|+|+|+||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 3689999999999999999999999999999999999721 1 122345555543 367999999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 279 DL~ 281 (362)
T 1zcb_A 279 DLL 281 (362)
T ss_dssp HHH
T ss_pred hhh
Confidence 985
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.63 E-value=0.0001 Score=74.40 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCccchHHHHHHhh-hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAAL-RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l-~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+..+.++||+|..... ..+ ...+..+.|+|+..+....... ....+.|.++++||+|+.
T Consensus 117 ~~~d~~~id~~g~i~~~----~s~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP----ADFDLGTHKRIVVISTTEGDDTIEKH----PGIMKTADLIVINKIDLA 177 (226)
T ss_dssp GGCSEEEEECCSCSSGG----GGCCCSCSEEEEEEEGGGCTTTTTTC----HHHHTTCSEEEEECGGGH
T ss_pred CCCCEEEEeCCCCccCc----chhhhccCcEEEEEecCcchhhHhhh----hhHhhcCCEEEEeccccC
Confidence 34578999999953211 111 2345567888875543222111 112367899999999986
No 217
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.60 E-value=0.00012 Score=80.31 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=56.9
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhcc---ccc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY---RGE 84 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~---~~~ 84 (794)
..+|++ +|+.|+|||||+++|....-..... ..+.|+......+.+... +.+.+ ...
T Consensus 20 g~~vgi---VG~pnaGKSTL~n~Ltg~~~a~~~~---------------~p~tTi~p~~G~v~v~~~--r~~~l~~~~~~ 79 (392)
T 1ni3_A 20 NLKTGI---VGMPNVGKSTFFRAITKSVLGNPAN---------------YPYATIDPEEAKVAVPDE--RFDWLCEAYKP 79 (392)
T ss_dssp CCEEEE---EECSSSSHHHHHHHHHHSTTTSTTC---------------CSSCCCCTTEEEEEECCH--HHHHHHHHHCC
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHCCCcccccC---------------CCceeecceeeeeeeCCc--chhhhhhhccc
Confidence 457888 9999999999999996532211110 012233333333333210 00000 000
Q ss_pred cCCCceEEEEEcCCCccc-------hHHHHHHhhhccCceEEEEeCCC
Q 003804 85 RQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (794)
...-+..+.++||||... +.......++.+|+++.|+|+.+
T Consensus 80 ~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 000124689999999654 34466778899999999999975
No 218
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.58 E-value=0.00014 Score=71.99 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcC-----CccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-----IRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~-----~~~iv~iNKiD~~ 155 (794)
.|.+.|||||+.. ...+..++..+|.+|+++.+...- ..+...++.+...+ ++..+++|+.|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5889999999986 356778889999999999998777 77777877776543 4667999999853
No 219
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.47 E-value=0.00011 Score=73.42 Aligned_cols=85 Identities=16% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCCCeEEEEEEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCE
Q 003804 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT 443 (794)
Q Consensus 364 ~~~plva~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI 443 (794)
.++||.+.|..++. +.|. +..+||.+|++++||.|.+++.+ . ..+|++|+.. .+++++|.|||.
T Consensus 3 ~~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~~I~~~----~~~~~~A~aGd~ 66 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPNK----H-----NVEVLGILSD----DVETDTVAPGEN 66 (204)
T ss_dssp ----CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTTT----E-----EEEEEEECSS----SSCBSEECTTSE
T ss_pred CCCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCCC----C-----EEEEEEEEEC----CEEeEEECCCCE
Confidence 35788888877765 4566 89999999999999999987532 2 2588888753 368999999999
Q ss_pred EEE--eccccccccce-eeecCCC
Q 003804 444 VAM--VGLDQYITKNA-TLTNEKE 464 (794)
Q Consensus 444 ~ai--~gl~~~~~~tg-Tl~~~~~ 464 (794)
+++ .|++..-...| +|+++.+
T Consensus 67 V~l~L~gi~~~di~rG~vl~~~~~ 90 (204)
T 3e1y_E 67 LKIRLKGIEEEEILPGFILCDPNN 90 (204)
T ss_dssp EEEEEEESSSSCCCTTCEEBCSSS
T ss_pred EEEEEcCCCHHHCccceEEECCCC
Confidence 999 67764333556 8887654
No 220
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.46 E-value=5.9e-05 Score=86.98 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=60.8
Q ss_pred ceeeEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccc
Q 003804 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (794)
Q Consensus 5 ~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (794)
..+...|+| +|.+++|||||+|+|+.....+.. .|.+ ++.|. ....|.. +.
T Consensus 35 ~~~~~~Vai---vG~pnvGKStLiN~L~g~~~~~~~--~~tt-----------~~~T~----gi~~~~~---------~~ 85 (592)
T 1f5n_A 35 TQPMVVVAI---VGLYRTGKSYLMNKLAGKKKGFSL--GSTV-----------QSHTK----GIWMWCV---------PH 85 (592)
T ss_dssp CSBEEEEEE---EEBTTSSHHHHHHHHTTCSSCSCC--CCSS-----------SCCCC----SEEEEEE---------EC
T ss_pred cCCCcEEEE---ECCCCCCHHHHHHhHcCCCCcccc--CCCC-----------CCcee----EEEEeec---------cc
Confidence 345678888 999999999999999543221211 1100 11121 1122310 00
Q ss_pred cCCCceEEEEEcCCCccchHH------HHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh
Q 003804 85 RQGNEYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG 140 (794)
Q Consensus 85 ~~~~~~~inlIDTPGh~df~~------e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~ 140 (794)
....+..+.||||||..+... ....++...-..++|+|+..++..+...++..+..
T Consensus 86 ~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 86 PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHT
T ss_pred ccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHH
Confidence 112367899999999765322 12222333233478888888888887776665543
No 221
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.46 E-value=0.00012 Score=80.69 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCC----------Ccchh-HHHHHHHHHh----cCCccEEEEecCc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------GVCVQ-TETVLRQALG----ERIRPVLTVNKMD 153 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~----------gv~~q-t~~~~~~~~~----~~~~~iv~iNKiD 153 (794)
+..+.||||+|+..|.......++.++++|+|+|.++ --..+ ....|..+.. .++|++||.||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 6899999999999999999999999999999999987 22222 2334444443 3578999999999
Q ss_pred cc
Q 003804 154 RC 155 (794)
Q Consensus 154 ~~ 155 (794)
+.
T Consensus 296 L~ 297 (402)
T 1azs_C 296 LL 297 (402)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 222
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.31 E-value=0.00058 Score=68.33 Aligned_cols=66 Identities=11% Similarity=-0.039 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCc-cchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhc-CCccEEEEecCccc
Q 003804 88 NEYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-RIRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh-~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~-~~~~iv~iNKiD~~ 155 (794)
..+.+.+||||+. .. ..+..++..+|.+|+++.+...-...+...++.+... +.+..+++|+.|..
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 3678999999997 54 2456788899999999998866556666677776663 66777999999875
No 223
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.09 E-value=0.00044 Score=73.99 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=39.2
Q ss_pred CceEEEEEcCCCccchHHHHHHhh------------hccCceEEEEeCCCCcchhHHHHHHHHHh--cCCccE-EEEecC
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAAL------------RITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPV-LTVNKM 152 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l------------~~~D~ailvvda~~gv~~qt~~~~~~~~~--~~~~~i-v~iNKi 152 (794)
+++.+.||||||...........+ ..+|.+++|+|+..| ..+ +.++.. ..++.. +++||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~---l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNG---VIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHH---HHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHH---HHHHHHHhhcCCCcEEEEeCC
Confidence 468899999999765432222211 237899999999855 122 233322 234444 899999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|..
T Consensus 265 d~~ 267 (320)
T 1zu4_A 265 DST 267 (320)
T ss_dssp GGC
T ss_pred CCC
Confidence 975
No 224
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.08 E-value=0.00086 Score=74.13 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=67.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCCcccccCCceeecCChhhHhhhCcccccceEEEEeecchhhhhccccccCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~~~~G~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (794)
...+++ +|+.|+|||||++.|+. .+.. ..|+.. .+..+..+ ++ +.+.. .
T Consensus 69 ~~~val---vG~nGaGKSTLln~L~G---l~~p-~~GsI~-~~g~~~t~-~~---------~v~q~-------------~ 117 (413)
T 1tq4_A 69 VLNVAV---TGETGSGKSSFINTLRG---IGNE-EEGAAK-TGVVEVTM-ER---------HPYKH-------------P 117 (413)
T ss_dssp CEEEEE---EECTTSSHHHHHHHHHT---CCTT-STTSCC-CCC----C-CC---------EEEEC-------------S
T ss_pred CeEEEE---ECCCCCcHHHHHHHHhC---CCCc-cCceEE-ECCeecce-eE---------Eeccc-------------c
Confidence 457888 99999999999999953 2221 123211 11111101 01 11210 0
Q ss_pred CceEEEEEcCCCccch---HHHHHHh--hhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccchh
Q 003804 88 NEYLINLIDSPGHVDF---SSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 157 (794)
Q Consensus 88 ~~~~inlIDTPGh~df---~~e~~~~--l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~~~ 157 (794)
....++++|+||...- ..+.... +...|..++ +++.. .+.|...+.+.+...+.|.++++||.|..++
T Consensus 118 ~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence 1225789999996421 2233332 233344443 66654 4667777777777889999999999998643
No 225
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.07 E-value=0.00031 Score=76.23 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCC----------CCcc-hhHHHHHHHHHh----cCCccEEEEecC
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI----------EGVC-VQTETVLRQALG----ERIRPVLTVNKM 152 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~----------~gv~-~qt~~~~~~~~~----~~~~~iv~iNKi 152 (794)
+...+.+|||+|+..|.......++.+|++|+|+|.+ .--. ......|+.+.. .++|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4688999999999999999999999999999999987 1111 122334444443 467899999999
Q ss_pred ccc
Q 003804 153 DRC 155 (794)
Q Consensus 153 D~~ 155 (794)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 985
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.05 E-value=0.0005 Score=76.21 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCccch----HHHHH--HhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDF----SSEVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df----~~e~~--~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~~ 155 (794)
.++.+.||||||.... ..++. ..+..+|.+++|+|+..|. ......+... ..++ .-+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~-~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFD-EKVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHH-HHTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHH-hcCCceEEEEeCcCCc
Confidence 4678999999997543 23322 2223589999999998652 2222222221 2344 45899999975
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.00 E-value=0.0016 Score=75.85 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=39.1
Q ss_pred eEEEEEcCCCccc------------hHHHHHHh-hhcc-CceEEEEeCCCCcchh-HHHHHHHHHhcCCccEEEEecCcc
Q 003804 90 YLINLIDSPGHVD------------FSSEVTAA-LRIT-DGALVVVDCIEGVCVQ-TETVLRQALGERIRPVLTVNKMDR 154 (794)
Q Consensus 90 ~~inlIDTPGh~d------------f~~e~~~~-l~~~-D~ailvvda~~gv~~q-t~~~~~~~~~~~~~~iv~iNKiD~ 154 (794)
-.+.|+|.||... -..++... +..- ..+++++++......+ ...+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 4589999997532 11122333 3322 4566666665444322 234555555668899999999998
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 227 v 227 (608)
T 3szr_A 227 V 227 (608)
T ss_dssp S
T ss_pred c
Confidence 7
No 228
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.92 E-value=0.00078 Score=71.48 Aligned_cols=63 Identities=16% Similarity=0.045 Sum_probs=49.8
Q ss_pred EEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCc-chhHH-HHHHHHHhcCCccEEEEecCccc
Q 003804 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTE-TVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 91 ~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv-~~qt~-~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+.+||| +..|..-...+++.+|++|+|+|+.+.. ..... ..+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 8888877788999999999999999754 33322 23344455789999999999986
No 229
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.85 E-value=0.0011 Score=74.29 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCccc----hHHH---HHHhhh-----ccCceEEEEeCCCCcchhHHHHHHHHH-hcCCccEEEEecCcc
Q 003804 88 NEYLINLIDSPGHVD----FSSE---VTAALR-----ITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~d----f~~e---~~~~l~-----~~D~ailvvda~~gv~~qt~~~~~~~~-~~~~~~iv~iNKiD~ 154 (794)
+++.+.||||+|... +..+ +.+.++ ..+-++||+|+..|-.. ....+... ..+ ...+++||+|.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~-itgvIlTKLD~ 450 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVG-LTGITLTKLDG 450 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTC-CSEEEEECGGG
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcC-CCEEEEEcCCC
Confidence 345688999999743 2222 222222 13567999999877221 12222222 223 34689999997
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 451 t 451 (503)
T 2yhs_A 451 T 451 (503)
T ss_dssp C
T ss_pred c
Confidence 4
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.78 E-value=0.00075 Score=70.89 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHH
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
+.++|++ +|.+|+|||||+++|+.
T Consensus 119 ~~~~v~~---vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALI---IGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEE---EESTTSSHHHHHHHHHT
T ss_pred CCceEEE---EecCCCchHHHHHHHhc
Confidence 4578999 99999999999999963
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.73 E-value=0.0011 Score=71.26 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCccc----hHHHHHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVD----FSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~d----f~~e~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++.+.+|||+|... +..+..... -..|-.++++|+..|- +.....+...+.--..++++||+|..
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 35567899999643 333332211 2468899999988762 22233333332222457999999974
No 232
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.72 E-value=0.00084 Score=68.47 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~ 154 (794)
..|.+.|||||+.... .+..++..+|.+|+|+++...-...+..+.+.+...+++.+ +++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4688999999987653 56678899999999999875444455566666667777654 89999984
No 233
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.62 E-value=0.0019 Score=68.55 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=36.9
Q ss_pred eEEEEEcCCCccchH----HHHH-------Hhhh-ccCceEEEEeCCCCcchhHHHHHHHHH-hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFS----SEVT-------AALR-ITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~----~e~~-------~~l~-~~D~ailvvda~~gv~~qt~~~~~~~~-~~~~~~iv~iNKiD~~ 155 (794)
+.+.++||+|..+.. .+.. +++. ..+.+++++|+..|.... ..++... ..+ ..++++||.|..
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~--~~~~~~~~~~~-~t~iivTh~d~~ 260 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL--EQAKKFHEAVG-LTGVIVTKLDGT 260 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH--HHHHHHHHHHC-CSEEEEECTTSS
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH--HHHHHHHHHcC-CcEEEEECCccc
Confidence 456799999965322 2211 1111 256688999998774322 2223322 234 468999999975
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.51 E-value=0.0021 Score=68.17 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCccchHHHH-------HHhh-----hccCceEEEEeCCCCcchhHHHHHHHHHhcCCc-cEEEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEV-------TAAL-----RITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~-------~~~l-----~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~-~iv~iNKiD~ 154 (794)
.++.+.||||||......+. ...+ ...|.+++|+|+..|. ......+...+ ..+ .-+++||+|.
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~-~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKE-AVNVTGIILTKLDG 261 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHH-HSCCCEEEEECGGG
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHh-cCCCCEEEEeCCCC
Confidence 35678999999964433222 1222 1368889999997431 11111222222 233 3478899997
Q ss_pred c
Q 003804 155 C 155 (794)
Q Consensus 155 ~ 155 (794)
.
T Consensus 262 ~ 262 (306)
T 1vma_A 262 T 262 (306)
T ss_dssp C
T ss_pred c
Confidence 5
No 235
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.36 E-value=0.0029 Score=66.82 Aligned_cols=65 Identities=23% Similarity=0.306 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCccch----HHHHHHhh--hccCceEEEEeCCCCcchhHHHHHHHHHhcCCcc-EEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDF----SSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df----~~e~~~~l--~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~-iv~iNKiD~~ 155 (794)
.++.+.||||||.... ..++.... ..+|.+++|+|+..+ ..+....+... ..++. -+++||+|..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~-~~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHH-HHTCCCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHh-hcCCCCEEEEECCCCC
Confidence 3678999999986433 22222222 257899999998754 22222222222 13443 3899999975
No 236
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.36 E-value=0.01 Score=57.78 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=92.8
Q ss_pred CCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeee
Q 003804 630 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 709 (794)
Q Consensus 630 g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 709 (794)
+..+.||.|.|+.+- .-...+++-++.|-..|.++||..++.+-..|...+.|.++-..+|+|...|.+.. .|.+.
T Consensus 80 ~~~l~nv~vVVtRyf---GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~ 155 (191)
T 2cve_A 80 AQGLDRVAVLVVRYF---GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEE 155 (191)
T ss_dssp HTTBCSEEEEEEEEC---CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEE
T ss_pred HcCCCcEEEEEEEEe---CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceecc
Confidence 566888888887542 12345555566788899999999999999999999999999999999999999988 99888
Q ss_pred eccCCCCc-EEEEEEechhhhhCchHHHhhhcCCceEe
Q 003804 710 MQRPGTPL-YNIKAYLPVVESFGFSSTLRAATSGQAFP 746 (794)
Q Consensus 710 ~~~~~~~~-~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~ 746 (794)
+..+ . +.++..+|..+.-.|...|..+|+|++.+
T Consensus 156 ~y~~---~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 156 TYTP---EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEET---TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEcC---CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 7753 4 88999999999999999999999999754
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.31 E-value=0.0014 Score=67.97 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
+++++ +|.+|+|||||+++|.
T Consensus 100 ~~v~~---vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLI---VGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEE---EESTTSSHHHHHHHHH
T ss_pred hheEE---eCCCCCCHHHHHHHHh
Confidence 47888 9999999999999996
No 238
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.28 E-value=0.0053 Score=64.38 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=43.2
Q ss_pred EcCCCcc-chHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 95 IDSPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 95 IDTPGh~-df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
=+-|||. ....++...+..+|+++.|+||..........+-+.+ .++|.++++||+|+.
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGS
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccC
Confidence 3569997 5678899999999999999999987766543332222 578999999999997
No 239
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.27 E-value=0.0044 Score=65.63 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh----cCCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~----~~~~~i-v~iNKiD~ 154 (794)
..|.+.|||||+..... .+..++..+|.+|+|+++...-...+..+++.+.. .+++.+ +++|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46889999999865422 23467889999999998765434455555666554 345555 89999984
No 240
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.24 E-value=0.0041 Score=65.68 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCccchHHH----HHHhhh--ccCceEEEEeCCCCcchhHHHHHHHHHhcC-Cc-cEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSE----VTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e----~~~~l~--~~D~ailvvda~~gv~~qt~~~~~~~~~~~-~~-~iv~iNKiD~~ 155 (794)
.++.+.||||||....... +...+. ..|.+++|+|+..+.. .+.+.+.... ++ .-+++||+|..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 3678999999997654332 223333 3577899999986631 1222222221 22 23778999975
No 241
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.20 E-value=0.011 Score=60.89 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcC--CccEEEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER--IRPVLTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~--~~~iv~iNKiD~~ 155 (794)
..|.+.|||||+... ..+..++..+|.+|+|+.+...-......+.+.+...+ ++..+++|+.++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 468899999999764 45677888899999999987544444555666666653 4666999999654
No 242
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=96.15 E-value=0.012 Score=58.31 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=93.9
Q ss_pred CCCeeeEEEEEEeeeecccccccCcCchHHHHHHHHHHHHHhcCCceecCeEEEEEEeccCcchhHHHHhhhcccceeee
Q 003804 630 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 709 (794)
Q Consensus 630 g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~llEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 709 (794)
+..+.||.|.|+.+- .-...+++-+..|-..|.++||.+|+.+-..|...+.|.++-..+|+|...|.+..+.|.+.
T Consensus 92 ~~~l~nv~vVVtRyf---GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~ 168 (217)
T 1vi7_A 92 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINS 168 (217)
T ss_dssp HHTCCSEEEECCEEC---CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCCEEEEEEEEe---CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEce
Confidence 345778888776542 12345555566788899999999999999999999999999999999999999999999988
Q ss_pred eccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEee
Q 003804 710 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 747 (794)
Q Consensus 710 ~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~ 747 (794)
+..+ .+.++..+|..+.-.|...|..+|+|++.+.
T Consensus 169 ~y~~---~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 169 DYQA---FVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp EESS---SEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 8753 5889999999999999999999999998543
No 243
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.85 E-value=0.023 Score=63.22 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.2
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.+..-|+| +|..++|||||+|+|+..
T Consensus 65 ~~v~vVsV---~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSV---AGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEE---EESTTSSHHHHHHHHHHH
T ss_pred CceEEEEE---ECCCCCcHHHHHHHHhhh
Confidence 35567777 999999999999999875
No 244
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.16 E-value=0.02 Score=62.36 Aligned_cols=62 Identities=16% Similarity=-0.012 Sum_probs=40.0
Q ss_pred EEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 91 ~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+.-+|+| +.+|........+.+|++++|||+.+........+-+. -.+.|+++|+||+|+.
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~--l~~~piilV~NK~DLl 111 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRF--AADNPILLVGNKADLL 111 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHH--CTTSCEEEEEECGGGS
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHH--hCCCCEEEEEEChhcC
Confidence 34445655 77898888888899999999999997653332222222 1367999999999996
No 245
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.16 E-value=0.033 Score=57.39 Aligned_cols=67 Identities=21% Similarity=0.045 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~ 154 (794)
..|.+.|||||+..........++..+|.+|+|+.+.......+...++.+...+++.+ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56889999999976533223334457899999999887766677777888888888877 89999984
No 246
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.04 E-value=0.0092 Score=61.80 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=38.8
Q ss_pred CCccchH-HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 98 PGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 98 PGh~df~-~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
|||.... .++...+..+|.++.|+||..........+ .. . ++|+++++||+|+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~l-l--~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DF-S--RKETIILLNKVDIA 59 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CC-T--TSEEEEEEECGGGS
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hh-c--CCCcEEEEECccCC
Confidence 8997544 588899999999999999998765543222 11 1 88999999999997
No 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.03 E-value=0.031 Score=59.08 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=37.1
Q ss_pred eEEEEEcCCCccchHHH----H---HHhh-----hccCceEEEEeCCCCcchhHHHHHHHHH-hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSE----V---TAAL-----RITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e----~---~~~l-----~~~D~ailvvda~~gv~~qt~~~~~~~~-~~~~~~iv~iNKiD~~ 155 (794)
....++||.|...+... . ..++ ...+-.++|+|++.|....+. .+... ..+ ..+++++|+|-.
T Consensus 184 ~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g-~t~iiiThlD~~ 259 (302)
T 3b9q_A 184 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVG-ITGLILTKLDGS 259 (302)
T ss_dssp CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTC-CCEEEEECCSSC
T ss_pred CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcC-CCEEEEeCCCCC
Confidence 34678999997543221 1 1111 124456999998888655433 23333 334 457889999864
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.63 E-value=0.028 Score=59.43 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=40.7
Q ss_pred ccchHHHHHHhhhccCceEEEEeCCCCc-chhH-HHHHHHHHhcCCccEEEEecCccc
Q 003804 100 HVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 100 h~df~~e~~~~l~~~D~ailvvda~~gv-~~qt-~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
+..|..-....++.+|++++|+|+.+.. ..+. .+.+..+...++|+++++||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 3444433445789999999999999764 4443 334455667889999999999987
No 249
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.29 E-value=0.046 Score=59.10 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=36.8
Q ss_pred eEEEEEcCCCccchHHHH-------HH----hh-hccCceEEEEeCCCCcchhHHHHHHHHH-hcCCccEEEEecCccc
Q 003804 90 YLINLIDSPGHVDFSSEV-------TA----AL-RITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPVLTVNKMDRC 155 (794)
Q Consensus 90 ~~inlIDTPGh~df~~e~-------~~----~l-~~~D~ailvvda~~gv~~qt~~~~~~~~-~~~~~~iv~iNKiD~~ 155 (794)
+...++||.|...+.... .. ++ ...+-.++|+|++.|...... .+... ..+ ..+++++|+|-.
T Consensus 241 ~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g-~t~iiiThlD~~ 316 (359)
T 2og2_A 241 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVG-ITGLILTKLDGS 316 (359)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTC-CCEEEEESCTTC
T ss_pred CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcC-CeEEEEecCccc
Confidence 345789999975432211 11 11 124456999998877655433 22222 334 457889999864
No 250
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.78 E-value=0.055 Score=54.40 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
..|.+.|||||+... ..+..++..+|.+|+|+++...-...+...++.+...+.+.+ +++||.|..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 468899999998755 567788899999999999876555566667777777777655 899999864
No 251
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.69 E-value=0.054 Score=58.91 Aligned_cols=58 Identities=16% Similarity=0.029 Sum_probs=38.2
Q ss_pred EcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 95 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 95 IDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
++. ...+|........+.+|++++|+|+.+-....... ++.. ..++|+++|+||+|+.
T Consensus 52 v~~-~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~-l~~~-~~~~p~ilV~NK~DL~ 109 (368)
T 3h2y_A 52 VSL-TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPG-LHRF-VGNNKVLLVGNKADLI 109 (368)
T ss_dssp -----CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTT-HHHH-SSSSCEEEEEECGGGS
T ss_pred CCC-CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHH-HHHH-hCCCcEEEEEEChhcC
Confidence 443 34678888888888999999999998632111111 1221 1377999999999996
No 252
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=93.52 E-value=0.14 Score=52.42 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh------cCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~------~~~~~i-v~iNKiD~~ 155 (794)
..|.+.|||||+.... .+..++..+|.+|+|+.+...-...+..+++.+.. .+++.+ +++|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 5788999999997653 35667789999999999875443334444433322 255665 899999864
No 253
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.51 E-value=0.091 Score=54.97 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
.|.+.|||||+..... +.....+.+|++|+|+.+...-.......++.+...+.+.+ +|+||+|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 4779999999976542 34556678999999999988777777788888888888876 899999865
No 254
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=93.37 E-value=0.062 Score=44.18 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=54.5
Q ss_pred EEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEe
Q 003804 681 YLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 746 (794)
Q Consensus 681 ~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~ 746 (794)
-+..+.++-..+|+|...|.+..+.|.+.+..+ .+.+...+|..+.-.|...|+.+|+|++.+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~---~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQA---FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE---EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEcccccC---eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 356789999999999999999999999988753 589999999999999999999999999854
No 255
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.36 E-value=0.059 Score=55.20 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
..|.+.|||||+... ..+..++..+|.+|+|+.+...-...+...++.+...+.+.+ +++|+.|..
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 357899999998765 567788899999999998875555566666677666676655 899999864
No 256
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.06 E-value=0.1 Score=51.77 Aligned_cols=65 Identities=5% Similarity=-0.034 Sum_probs=35.7
Q ss_pred EEEEEcCC------CccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHH---HH-h----cCCccEEEEecC-ccc
Q 003804 91 LINLIDSP------GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ---AL-G----ERIRPVLTVNKM-DRC 155 (794)
Q Consensus 91 ~inlIDTP------Gh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~---~~-~----~~~~~iv~iNKi-D~~ 155 (794)
++..--+| |+..+..-...++..+|++|+|||+++.-....+.-+.. +. . .++|.+|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 45555666 566666678889999999999999987632224333321 11 1 467899999995 676
No 257
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.77 E-value=0.12 Score=53.68 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
.+.+.|||||+..... +....++.+|++|+|+.+...-..+.....+.+...+.+.+ +++|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5789999999975432 33444568999999999988777777777788888888877 899999865
No 258
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=92.66 E-value=0.34 Score=42.91 Aligned_cols=50 Identities=24% Similarity=0.332 Sum_probs=37.5
Q ss_pred CcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 382 g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
++ +..+||.+|+|++|+.| . + + + ...+|.+|.. +.+++++|.|||-|++.
T Consensus 48 gp-vivGrVe~G~LK~G~~V--P--g----~-~--~vg~VkSIE~----~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 48 KD-VIIGTVESGMIGVGFKV--K--G----P-S--GIGGIVRIER----NREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EE-EEEEEEEEEEEETTCEE--E--C----S-S--CEEEEEEEEE----TTEEESEEETTCEEEEE
T ss_pred CC-eeEEEEeEEEEcCCCCc--C--C----C-c--eEEEEEEEEE----CCcCcCCcCCCCEEEEE
Confidence 45 77889999999999999 2 2 1 0 0145666664 55789999999999885
No 259
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.50 E-value=0.2 Score=52.62 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
..+.+.|||||+..... +.....+.+|++|+|+.+......+....++.+...+++.+ +++|+.|..
T Consensus 212 ~~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 212 DHYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HHCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred hCCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 35779999999976533 33445578999999999988777788888888888888877 899999864
No 260
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.18 E-value=0.17 Score=52.93 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh------cCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~------~~~~~i-v~iNKiD~~ 155 (794)
..|.+.|||||+.... .+..++..+|.+|+|+.+...-...+...++.+.. .+++.+ +++|+.|..
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 4688999999997653 34567778999999999876655555555554433 366655 899999864
No 261
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.12 E-value=0.055 Score=57.19 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=17.5
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.+++ +|+.|+|||||++.|+
T Consensus 175 ~~~l---vG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 175 TTVF---AGQSGVGKSSLLNAIS 194 (307)
T ss_dssp EEEE---EESHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHhc
Confidence 4566 9999999999999993
No 262
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.05 E-value=0.11 Score=58.41 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=21.5
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
....|.+ +|..|+||||++.+|....
T Consensus 38 ~~~~Ivl---vGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVM---VGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEE---ECCCCCCHHHHHHHHHHHH
Confidence 3567888 9999999999999996543
No 263
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.97 E-value=0.21 Score=52.76 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=36.8
Q ss_pred HhhhccCceEEEEeCCCCcchhH--HHHHHHHHhcCCccEEEEecCccc
Q 003804 109 AALRITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 109 ~~l~~~D~ailvvda~~gv~~qt--~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
..+..+|.+++|+|+.++..... .+.+..+...++|+++++||+|+.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccC
Confidence 36889999999999997654433 334455567899999999999997
No 264
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.25 E-value=0.21 Score=52.58 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.6
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.+++ +|+.|+|||||++.|+
T Consensus 167 i~~l---~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICIL---AGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 3466 8999999999999996
No 265
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=91.01 E-value=0.16 Score=51.55 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcC---------CccEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER---------IRPVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~---------~~~iv~iNKiD~~ 155 (794)
.|.+.|||||+... ..+..++..+|.+|+|+++...-...+..+++.+...+ .+.-+++|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 68899999999654 46778889999999999987554455555666655443 3455899999864
No 266
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.91 E-value=0.16 Score=51.05 Aligned_cols=65 Identities=14% Similarity=0.029 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCC--c-cEEEEecCccc
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI--R-PVLTVNKMDRC 155 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~--~-~iv~iNKiD~~ 155 (794)
.|.+.|||||+..+ ..+..++..+|.+|+|+.+...-...+..+++.+...+. + .-+++|+.|..
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 68899999999764 356678899999999999875555566667777776663 3 44899999864
No 267
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.55 E-value=0.11 Score=54.26 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCC
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 124 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~ 124 (794)
..|.+.|||||+.. ...+..++..+|.+|+|+.+.
T Consensus 102 ~~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 102 AECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HHCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred hcCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 35789999999975 466788999999999999886
No 268
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.92 E-value=0.81 Score=45.21 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=43.5
Q ss_pred CceEEEEEcCCCccc--hH---HHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHVD--FS---SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~d--f~---~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
+.|.+.||||||... .. ....-+....+.+|+|+++..+-..++...++.+...+++.+ +++|+.|..
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 357899999997643 11 111111122245888888865544556666677767788866 899999864
No 269
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.57 E-value=0.17 Score=48.66 Aligned_cols=22 Identities=14% Similarity=0.378 Sum_probs=18.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.++| +|+.|||||||++.|+..
T Consensus 7 ~i~i---~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVL---LGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 4566 899999999999999764
No 270
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.51 E-value=0.18 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
++++ +|+.|+|||||+..|....+
T Consensus 2 ~i~l---~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIII---TGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHHG
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5677 99999999999999965443
No 271
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.27 E-value=0.84 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=18.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.-|.+ +|.+||||||++..|..
T Consensus 259 ~lIil---~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVA---VGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEE---ESCTTSSHHHHHHHHTG
T ss_pred EEEEE---ECCCCCCHHHHHHHHHH
Confidence 44566 89999999999999953
No 272
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=89.14 E-value=0.39 Score=49.89 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=40.0
Q ss_pred CccchHHHHHHhhhccCceEEEEeCCCCcchhHHHH-------HHHHH-hcCCccEEEEec-Cccc
Q 003804 99 GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-------LRQAL-GERIRPVLTVNK-MDRC 155 (794)
Q Consensus 99 Gh~df~~e~~~~l~~~D~ailvvda~~gv~~qt~~~-------~~~~~-~~~~~~iv~iNK-iD~~ 155 (794)
|+..+.......+..+|++|+|||+++......+.- +.... ..++|.+|+.|| -|.+
T Consensus 196 GQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 196 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp -CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 667778888999999999999999987532223221 21212 257899999997 5776
No 273
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.02 E-value=0.26 Score=51.77 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.3
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.+++ +|+.|+|||||++.|+
T Consensus 171 iv~l---~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 171 ISTM---AGLSGVGKSSLLNAIN 190 (301)
T ss_dssp EEEE---ECSTTSSHHHHHHHHS
T ss_pred eEEE---ECCCCCcHHHHHHHhc
Confidence 3566 8999999999999993
No 274
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.89 E-value=0.23 Score=47.21 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=21.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
..|++ +|..|||||||+..|....|.
T Consensus 9 ~~i~l---~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 9 HIYVL---MGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp EEEEE---ECSTTSCHHHHHHHHHHHHTC
T ss_pred cEEEE---EcCCCCCHHHHHHHHHHhhCc
Confidence 45777 999999999999999655554
No 275
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.88 E-value=0.19 Score=49.20 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=18.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.++| +|+.|+|||||++.|+..
T Consensus 6 ~i~l---vGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVL---SGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 4667 999999999999999753
No 276
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=88.62 E-value=1.2 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=21.1
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.+..-|+| +|..++|||+|++.|+..
T Consensus 65 ~~v~vvsv---~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 65 KEVVAVSV---AGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp SBEEEEEE---EEBTTSSHHHHHHHHHHH
T ss_pred CceEEEEE---ECCCCCchhHHHHHHHHH
Confidence 34556777 999999999999988754
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.34 E-value=0.24 Score=48.87 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.1
Q ss_pred eEEEEEcccccCCCCChhHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
...|+| +|+.|||||||+..|.
T Consensus 22 g~~v~I---~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 22 RQLVAL---SGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CEEEEE---ECCTTSCTHHHHHHHH
T ss_pred CeEEEE---ECCCCCCHHHHHHHHH
Confidence 356778 9999999999999984
No 278
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.29 E-value=0.71 Score=44.58 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCccEEEEecCccchhccCCCHHHHHHHHHHHHHHhhhhhhccc
Q 003804 133 TVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE 185 (794)
Q Consensus 133 ~~~~~~~~~~~~~iv~iNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (794)
.++..+.+...+.|+|-|-+-.- .......-..|++.+..+|..+....
T Consensus 117 ~ll~~l~~~~~~~vlVsNEVG~G----iVP~~~~~R~frD~~G~lnq~lA~~a 165 (180)
T 1c9k_A 117 ILIAACQRCPAKVVLVTNEVGMG----IVPENRLARHFRDIAGRVNQRLAAAA 165 (180)
T ss_dssp HHHHHHHHCCSEEEEECCCCCSS----CCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCCCEEEEEccccCC----CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 34455556666788888877654 34556677889999999999887543
No 279
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.28 E-value=0.21 Score=48.24 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.0
Q ss_pred EEEcccccCCCCChhHHHHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
+++ +|+.|||||||++.|+..
T Consensus 4 i~l---~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVI---SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEE---ESSSSSSHHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHhh
Confidence 456 899999999999999754
No 280
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=88.10 E-value=0.24 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=18.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.+++ +|+.|||||||+..|...
T Consensus 9 ii~l---~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFII---SAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHH
T ss_pred EEEE---ECcCCCCHHHHHHHHHhh
Confidence 4566 999999999999999654
No 281
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.97 E-value=0.24 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=18.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
-++| +|+.|||||||++.|...
T Consensus 22 i~~l---~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVL---SGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 3566 899999999999999543
No 282
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.28 E-value=0.33 Score=47.17 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=22.2
Q ss_pred CccceeeEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 2 SSYCFTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 2 ~~~~~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
-+...+...|+| .|..||||||++..|...
T Consensus 2 ~~~~~~~~~I~i---~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 2 GHEAKHPIIIGI---TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ----CCCEEEEE---EECTTSCHHHHHHHHHHT
T ss_pred CCcccCceEEEE---ECCCCCCHHHHHHHHHHC
Confidence 334445677888 999999999999999654
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.01 E-value=0.31 Score=46.05 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.+++ +|+.|+|||||+..|...
T Consensus 35 ~v~L---~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYL---NGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHh
Confidence 4667 999999999999999654
No 284
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.01 E-value=0.29 Score=48.69 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.++| +|+.|+|||||++.|+..
T Consensus 25 ~~~l---vGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVI---CGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 4566 999999999999999653
No 285
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.73 E-value=0.29 Score=46.63 Aligned_cols=19 Identities=37% Similarity=0.357 Sum_probs=16.5
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
-+++ +|+.|||||||++.+
T Consensus 11 i~~l---~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVL---IGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEE---ECCTTSCHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4566 899999999999986
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.70 E-value=0.36 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=19.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
.|++ .|.+||||||++..| ...|.
T Consensus 3 ~I~l---~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 3 VILI---TGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp EEEE---ECCTTSCHHHHHHHH-HHTTC
T ss_pred EEEE---ECCCCCCHHHHHHHH-HHCCC
Confidence 4666 899999999999999 55553
No 287
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=86.65 E-value=0.32 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
-++| +|+.|||||||++.|+...
T Consensus 18 ii~l---~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIV---SAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHhccC
Confidence 4566 8999999999999997643
No 288
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.59 E-value=0.37 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|++ .|.+||||||++..|....|
T Consensus 3 ~i~l---~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIIL---EGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEE---ECSSSSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4667 89999999999999966555
No 289
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.57 E-value=0.34 Score=47.56 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
-|+| +|+.|+|||||++.|+...
T Consensus 21 ~ivl---~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVL---IGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHC
T ss_pred EEEE---ECcCCCCHHHHHHHHHhhC
Confidence 4667 8999999999999998654
No 290
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=86.57 E-value=0.37 Score=47.01 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=21.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGII 38 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i 38 (794)
.|++ +|..|||||||+..|....|.+
T Consensus 31 ~i~l---~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 31 HVVV---MGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhhCCe
Confidence 5677 8999999999999997655543
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.51 E-value=0.31 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
-|++ +|+.|+|||||+..|+...
T Consensus 10 ~i~l---~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVL---SGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHST
T ss_pred EEEE---ECcCCCCHHHHHHHHHhhC
Confidence 4667 8999999999999997543
No 292
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.43 E-value=0.42 Score=49.28 Aligned_cols=19 Identities=42% Similarity=0.384 Sum_probs=16.7
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|||||||++.|
T Consensus 39 ~~~l---iG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 39 MVAI---IGPNGAGKSTLLRLL 57 (266)
T ss_dssp EEEE---ECCTTSCHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 3455 999999999999999
No 293
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.41 E-value=0.31 Score=46.89 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.6
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.+++ +|+.|||||||+..|.
T Consensus 11 ~i~l---~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 11 ILLL---SGHPGSGKSTIAEALA 30 (191)
T ss_dssp EEEE---EECTTSCHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 4666 8999999999999994
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.30 E-value=0.39 Score=45.34 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=19.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|++ +|..|||||||+..|....|
T Consensus 6 ~i~l---~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFL---VGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEE---ECCTTSCHHHHHHHHHHHTT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4677 99999999999999965444
No 295
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=86.11 E-value=0.39 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
-+++ +|..|+|||||+++|+..
T Consensus 8 ~i~i---~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAF---AAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHH
T ss_pred EEEE---EeCCCCCHHHHHHHHHHh
Confidence 4566 899999999999999653
No 296
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.09 E-value=0.51 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.2
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIA 39 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~ 39 (794)
.++| +|+.|+|||||++.| +|.+.
T Consensus 30 ~~~i---~G~nGsGKSTLl~~l---~Gl~~ 53 (243)
T 1mv5_A 30 IIAF---AGPSGGGKSTIFSLL---ERFYQ 53 (243)
T ss_dssp EEEE---ECCTTSSHHHHHHHH---TTSSC
T ss_pred EEEE---ECCCCCCHHHHHHHH---hcCCC
Confidence 4566 999999999999999 45443
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.06 E-value=0.38 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.0
Q ss_pred EEEcccccCCCCChhHHHHHHHHHc
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
|+| +|++|+|||||+++|+...
T Consensus 4 IVi---~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVI---SGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEE---ECCTTSSHHHHHHHHHHHC
T ss_pred EEE---ECCCCCCHHHHHHHHHHhC
Confidence 566 8999999999999998653
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.03 E-value=0.39 Score=48.59 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=22.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCcc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIA 39 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~ 39 (794)
..|+| +|+.|||||||+..|...-|...
T Consensus 28 ~~i~l---~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVI---LGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHHhCCeE
Confidence 46788 99999999999999976656543
No 299
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.85 E-value=0.34 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
..|+| +|+.|||||||++.|...
T Consensus 7 ~~i~i---~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGI---AGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEE---EESTTSSHHHHHHHHHHH
T ss_pred EEEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 999999999999999553
No 300
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=85.79 E-value=1.4 Score=44.41 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=52.9
Q ss_pred eEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEee
Q 003804 680 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 747 (794)
Q Consensus 680 i~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~ 747 (794)
-|++.|.+|.++.+++++.|.+ -|.|..++..++ +...+.+.+|-----.+...|++.|+|+|.+.
T Consensus 184 ~m~l~v~ip~~~~~~~~~~l~~-~~~v~~ee~~~d-gs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 184 KVRVAIKIPGEMAGSAYGVISN-FGKITNEEWQND-GSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp EEEEEEEECGGGHHHHHHHHHH-HCEEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 4788999999999999999954 488877665432 34667789998766678899999999999764
No 301
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=85.39 E-value=0.41 Score=46.59 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.|++ +|+.|||||||++.|..
T Consensus 8 ~i~l---~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 8 LIVL---SGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 5667 99999999999999854
No 302
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.16 E-value=0.41 Score=46.87 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=21.0
Q ss_pred eeeEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 6 FTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 6 ~~~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.+...|++ .|..||||||++..|...
T Consensus 8 ~~~~~I~l---~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVF---EGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEE---EESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEE---EcCCCCCHHHHHHHHHHH
Confidence 34456888 999999999999999543
No 303
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.15 E-value=0.37 Score=48.67 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.7
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|||||||+..|
T Consensus 33 ~~~i---iG~nGsGKSTLl~~l 51 (235)
T 3tif_A 33 FVSI---MGPSGSGKSTMLNII 51 (235)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 3456 999999999999999
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.09 E-value=0.46 Score=45.41 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.+++ +|..|+|||||+.+|+.
T Consensus 6 ~i~i---~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQV---VGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4566 89999999999999964
No 305
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=85.00 E-value=0.5 Score=46.08 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
.|+| .|..|||||||+..|....|.
T Consensus 20 ~I~l---~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 20 SIVV---MGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp CEEE---ECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 5777 999999999999999765553
No 306
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=84.72 E-value=0.38 Score=48.17 Aligned_cols=18 Identities=39% Similarity=0.390 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
++| +|+.|||||||++.|
T Consensus 33 ~~i---iG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 33 VSI---IGASGSGKSTLLYIL 50 (224)
T ss_dssp EEE---EECTTSCHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHH
Confidence 455 999999999999998
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=84.68 E-value=0.5 Score=45.43 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=17.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.+++ +|+.|||||||+..|..
T Consensus 4 ii~l---~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYII---TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHhc
Confidence 3556 89999999999999964
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.33 E-value=0.51 Score=46.19 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
..|++ +|++|||||||++.|....
T Consensus 13 ~~i~l---~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVV---CGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEE---ECCTTSCHHHHHHHHHHHC
T ss_pred CEEEE---ECCCCCCHHHHHHHHHHhC
Confidence 35667 8999999999999997654
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.32 E-value=0.57 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|++ +|..||||||++..|....|
T Consensus 27 ~i~l---~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 27 RIFL---TGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred EEEE---EcCCCCCHHHHHHHHHHHcC
Confidence 6777 99999999999999976555
No 310
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=84.31 E-value=1.7 Score=43.59 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=53.0
Q ss_pred eEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeee
Q 003804 680 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 748 (794)
Q Consensus 680 i~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~ 748 (794)
-|++.|.+|.++.|++++.|. .-|.|..++..++ +.....+.+|-.---.+...|++.|+|+|.+..
T Consensus 169 ~m~~~v~vp~~~~~~~~~~l~-~~~~v~~ee~~~d-gs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 169 EMEIAIKIPPEHTGRAISALY-NFGGVTREEWQRD-GSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp EEEEEEEECGGGHHHHHHHHH-HHCCEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEEcHHHHHHHHHHHH-hhCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 478889999999999999994 4578877765432 346677899987666788999999999997654
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=84.28 E-value=0.49 Score=47.85 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
..|+| +|+.|||||||+..|...-|.
T Consensus 26 ~iigI---~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 26 FLIGV---SGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEE---ECCCCCCHHHHHHHHHHHhch
Confidence 45677 999999999999999654453
No 312
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.20 E-value=0.54 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
+|++ .|.+||||||++..|....|.
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVL---MGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 5777 999999999999999766554
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.20 E-value=0.46 Score=48.21 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=17.0
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.+++ +|+.|||||||+..|
T Consensus 26 ~~~l---iG~nGsGKSTLl~~l 44 (240)
T 2onk_A 26 YCVL---LGPTGAGKSVFLELI 44 (240)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4566 999999999999998
No 314
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.16 E-value=0.58 Score=46.06 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
+|+| .|.+||||||++..|....|.
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVL---MGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 5777 999999999999999766553
No 315
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.13 E-value=0.48 Score=46.92 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=18.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.+++ +|+.|+|||||+..|..
T Consensus 24 ~~~l---iG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFG---LGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEE---ECCTTSSTTHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHhc
Confidence 3567 99999999999999854
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.12 E-value=0.58 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|+| .|..||||||++..|...-|
T Consensus 2 ~I~i---~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAI---FGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHC
T ss_pred EEEE---ECCCccCHHHHHHHHHHhcC
Confidence 4677 99999999999999976555
No 317
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=84.04 E-value=0.6 Score=44.54 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
-.+.+ .|+.|+|||||+.++..
T Consensus 39 ~~~~l---~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTF---VGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEE---CCSSSSSHHHHHHHHHH
T ss_pred CEEEE---ECCCCCCHHHHHHHHHH
Confidence 35677 99999999999999854
No 318
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.86 E-value=0.88 Score=57.69 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=18.1
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
+|+| +|+.|||||||+..|+
T Consensus 1107 ~vaI---VG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1107 TLAL---VGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp EEEE---ECSTTSSTTSHHHHHT
T ss_pred EEEE---ECCCCChHHHHHHHHh
Confidence 6777 9999999999999994
No 319
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.71 E-value=5.2 Score=42.36 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=17.9
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.++| +|+.|||||||++.|+
T Consensus 173 ~v~i---~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 173 NVIV---CGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CEEE---EESTTSCHHHHHHHGG
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 5677 9999999999999994
No 320
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=83.67 E-value=0.55 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
..|++ .|.+||||||++..|..
T Consensus 3 ~~I~i---~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILT---IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHH
T ss_pred eEEEE---ecCCCCCHHHHHHHHHh
Confidence 34667 89999999999999965
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=83.67 E-value=0.61 Score=46.15 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.0
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|+| +|..||||||++..|...-|
T Consensus 6 ~~i~i---~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITI---DGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46788 99999999999999965555
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.65 E-value=0.67 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.0
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|++ .|..||||||++..|....|
T Consensus 4 ~~I~l---~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFV---LGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46777 99999999999999976555
No 323
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.59 E-value=0.57 Score=45.75 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
..|++ +|..||||||++..|.
T Consensus 3 ~~i~l---~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 3 YIVGL---TGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEE---ECSTTSCHHHHHHHHH
T ss_pred cEEEE---ECCCCCCHHHHHHHHH
Confidence 35777 9999999999999994
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.59 E-value=0.65 Score=44.35 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.+|++ +|..||||||++..|....|
T Consensus 6 ~~i~l---~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYL---IGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 36777 99999999999999966555
No 325
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.55 E-value=0.59 Score=45.52 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=17.5
Q ss_pred EEEcccccCCCCChhHHHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
+++ +|+.|+|||||+..|..
T Consensus 4 i~i---~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 4 VFL---TGPPGVGKTTLIHKASE 23 (189)
T ss_dssp EEE---ESCCSSCHHHHHHHHHH
T ss_pred EEE---ECCCCChHHHHHHHHHh
Confidence 566 99999999999999854
No 326
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.53 E-value=0.31 Score=46.69 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|..|+|||||++.|+.
T Consensus 4 ~v~I---vG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSI---VGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEE---EESCHHHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4677 99999999999999953
No 327
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=83.50 E-value=0.61 Score=47.90 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|+.|||||||+..|+.
T Consensus 27 ~v~i---~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILV---TGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEE---ECSTTCSHHHHHHHHHH
T ss_pred EEEE---ECCCCccHHHHHHHHHH
Confidence 5677 99999999999999864
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=83.43 E-value=0.53 Score=49.73 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=18.9
Q ss_pred eEEEEEcccccCCCCChhHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
..-|+| +|+.|||||||++.|.
T Consensus 90 g~ivgI---~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 90 PFIIGV---AGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CEEEEE---ECCTTSCHHHHHHHHH
T ss_pred CEEEEE---ECCCCchHHHHHHHHH
Confidence 456777 9999999999999984
No 329
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.35 E-value=0.78 Score=43.79 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=20.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|++ .|..||||||++..|....|
T Consensus 5 ~~I~l---~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIF---LGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46777 99999999999999965555
No 330
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=83.33 E-value=0.49 Score=48.65 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
++| +|+.|||||||+..|
T Consensus 35 ~~l---iG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 35 ISI---IGSSGSGKSTFLRCI 52 (262)
T ss_dssp EEE---ECCTTSSHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHH
Confidence 455 999999999999998
No 331
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=83.32 E-value=0.49 Score=48.45 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.9
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|||||||++.|
T Consensus 35 ~~~l---iG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 35 VTLI---IGPNGSGKSTLINVI 53 (257)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3556 999999999999999
No 332
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.30 E-value=0.54 Score=47.54 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.8
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|+|||||++.|
T Consensus 33 ~~~i---~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 33 LVAV---VGQVGCGKSSLLSAL 51 (237)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3556 999999999999999
No 333
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=83.19 E-value=0.54 Score=47.21 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=16.8
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|+|||||++.|
T Consensus 36 ~~~i---~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 36 LLAV---AGSTGAGKTSLLMMI 54 (229)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3556 999999999999999
No 334
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.15 E-value=0.55 Score=49.77 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=20.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
+++-|+| +|+.|||||||+..|...
T Consensus 91 ~p~iigI---~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGI---AGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEE---ECCCCCCHHHHHHHHHHH
Confidence 3466777 999999999999998543
No 335
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=83.08 E-value=0.5 Score=48.95 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEcccccCCCCChhHHHHHHHHHcCCcc
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIA 39 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~ 39 (794)
++| +|+.|||||||+..| +|.+.
T Consensus 37 ~~i---iGpnGsGKSTLl~~l---~Gl~~ 59 (275)
T 3gfo_A 37 TAI---LGGNGVGKSTLFQNF---NGILK 59 (275)
T ss_dssp EEE---ECCTTSSHHHHHHHH---TTSSC
T ss_pred EEE---ECCCCCCHHHHHHHH---HcCCC
Confidence 455 999999999999999 45443
No 336
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.02 E-value=0.54 Score=47.90 Aligned_cols=20 Identities=40% Similarity=0.326 Sum_probs=17.1
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.++| +|+.|+|||||++.|.
T Consensus 31 ~~~l---~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 31 VHAL---MGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 3456 9999999999999994
No 337
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=82.95 E-value=0.53 Score=46.84 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
++| +|+.|+|||||++.|
T Consensus 38 ~~i---iG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 38 VNF---HGPNGIGKTTLLKTI 55 (214)
T ss_dssp EEE---ECCTTSSHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHH
Confidence 455 999999999999999
No 338
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.93 E-value=0.53 Score=47.70 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=16.7
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|+|||||++.|
T Consensus 34 ~~~l---~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 34 IVTL---IGANGAGKTTTLSAI 52 (240)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3556 999999999999999
No 339
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.92 E-value=1.1 Score=48.10 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=16.2
Q ss_pred ccCCCCChhHHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~ 34 (794)
.|++|+|||||+.+++..
T Consensus 67 ~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 67 FGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 799999999999998754
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.86 E-value=0.55 Score=45.76 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.|+| +|..||||||++..|..
T Consensus 3 ~i~i---~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGL---TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEE---EECTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCcCHHHHHHHHHH
Confidence 5777 99999999999999965
No 341
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.85 E-value=0.61 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|+.|+|||||+..|+.
T Consensus 128 ~vaI---vGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAF---IGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEE---ECSSSSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHhh
Confidence 5677 99999999999999964
No 342
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.84 E-value=0.55 Score=47.09 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.3
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.+++ +|+.|||||||+..|+
T Consensus 32 ~~~l---~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLL---TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---EeCCCCCHHHHHHHHH
Confidence 4566 8999999999999885
No 343
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.81 E-value=0.57 Score=47.66 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.9
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|||||||++.|
T Consensus 37 ~~~i---~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 37 VIGI---VGRSGSGKSTLTKLI 55 (247)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3556 999999999999999
No 344
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.61 E-value=2.3 Score=44.14 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
-.+.+ .|++|+|||||+..+...
T Consensus 48 ~~~ll---~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLF---LGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEE---ESCSSSSHHHHHHHHHHH
T ss_pred eEEEE---ECCCCcCHHHHHHHHHHH
Confidence 46777 999999999999998553
No 345
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=82.55 E-value=2.9 Score=44.89 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=30.2
Q ss_pred hhhccCceEEEEeCCCCcchhHHH---HHHHHHhcCCccEEEEecCccc
Q 003804 110 ALRITDGALVVVDCIEGVCVQTET---VLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 110 ~l~~~D~ailvvda~~gv~~qt~~---~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
.+..+|.+++| |+.. ....... .+..+...++|+++|+||+|+.
T Consensus 127 i~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~ 173 (358)
T 2rcn_A 127 IAANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLL 173 (358)
T ss_dssp EEECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGC
T ss_pred HHhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 36788998876 5544 3333322 3344566899999999999987
No 346
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=82.45 E-value=0.61 Score=50.19 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.7
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.+++ +|+.|+|||||++.|+
T Consensus 217 ~~~l---vG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 217 ISIF---AGQSGVGKSSLLNALL 236 (358)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCccHHHHHHHHh
Confidence 4566 9999999999999995
No 347
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.35 E-value=0.76 Score=44.04 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=20.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|++ .|..||||||++..|....|
T Consensus 6 ~~I~l---~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 6 ALIIV---TGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEE---EESTTSSHHHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 45777 89999999999999965544
No 348
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=82.35 E-value=0.43 Score=47.73 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=13.6
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
-+++ +|+.|||||||++.|.
T Consensus 29 ii~l---~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVL---SSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEE---ECSCC----CHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 4566 9999999999999996
No 349
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.33 E-value=0.61 Score=47.86 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=19.2
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIA 39 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~ 39 (794)
.++| +|+.|+|||||+..| +|.+.
T Consensus 48 ~~~i---~G~nGsGKSTLl~~l---~Gl~~ 71 (260)
T 2ghi_A 48 TCAL---VGHTGSGKSTIAKLL---YRFYD 71 (260)
T ss_dssp EEEE---ECSTTSSHHHHHHHH---TTSSC
T ss_pred EEEE---ECCCCCCHHHHHHHH---hccCC
Confidence 4566 999999999999999 45543
No 350
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=82.26 E-value=0.57 Score=48.20 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
++| +|+.|+|||||++.|
T Consensus 53 ~~l---iG~NGsGKSTLlk~l 70 (263)
T 2olj_A 53 VVV---IGPSGSGKSTFLRCL 70 (263)
T ss_dssp EEE---ECCTTSSHHHHHHHH
T ss_pred EEE---EcCCCCcHHHHHHHH
Confidence 455 999999999999998
No 351
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.12 E-value=0.62 Score=46.03 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=17.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|+.|+|||||+..|+.
T Consensus 27 ~~~l---~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEV---FGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEE---EESTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4566 89999999999999954
No 352
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.03 E-value=0.75 Score=48.04 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=19.7
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHH
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
+...|+| +|++|||||||+..|.
T Consensus 30 ~~~ii~I---~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 30 CPLFIFF---SGPQGSGKSFTSIQIY 52 (290)
T ss_dssp SCEEEEE---ECCTTSSHHHHHHHHH
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHH
Confidence 3567788 9999999999999884
No 353
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.89 E-value=0.76 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|.+ .|.+||||||++..|....+
T Consensus 5 ~i~l---~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIIL---NGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHSS
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 4666 89999999999999966544
No 354
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.83 E-value=0.6 Score=47.79 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=16.7
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|||||||++.|
T Consensus 43 i~~l---~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 43 IFGL---IGPNGAGKTTTLRII 61 (256)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3455 999999999999999
No 355
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=81.82 E-value=0.63 Score=47.93 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.1
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.++| +|+.|+|||||++.|.
T Consensus 48 ~~~l---~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 48 VHAI---MGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 3456 9999999999999993
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=81.71 E-value=0.84 Score=46.13 Aligned_cols=28 Identities=14% Similarity=0.008 Sum_probs=23.4
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
+...|++ .|.+||||||++..|...-|.
T Consensus 28 ~~~~I~l---~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIF---LGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 4567888 999999999999999765554
No 357
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=81.69 E-value=0.66 Score=47.27 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCccc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ 40 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~~ 40 (794)
.++| +|+.|+|||||++.| +|.+..
T Consensus 28 ~~~l---iG~NGsGKSTLlk~l---~Gl~~p 52 (249)
T 2qi9_C 28 ILHL---VGPNGAGKSTLLARM---AGMTSG 52 (249)
T ss_dssp EEEE---ECCTTSSHHHHHHHH---TTSSCC
T ss_pred EEEE---ECCCCCcHHHHHHHH---hCCCCC
Confidence 3566 999999999999998 454433
No 358
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=81.65 E-value=0.66 Score=44.36 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=19.2
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
.|++ .|..|+||||++..|...-
T Consensus 3 ~I~i---~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIV---TGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEE---EECTTSCHHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHH
Confidence 4677 8999999999999996543
No 359
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=81.52 E-value=1.3 Score=46.71 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=16.5
Q ss_pred ccCCCCChhHHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~ 34 (794)
.|++|+|||||+-++.+.
T Consensus 129 ~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 129 TGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ECSCSSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHh
Confidence 899999999999999765
No 360
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=81.46 E-value=1.2 Score=47.89 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCC
Q 003804 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 125 (794)
Q Consensus 89 ~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~ 125 (794)
.|.+.|||||+... .....++..+|.+|+++.+..
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCCh
Confidence 68899999998654 456778888999999999864
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=81.44 E-value=0.77 Score=43.75 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.4
Q ss_pred ccCCCCChhHHHHHHHHHcC
Q 003804 17 ANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g 36 (794)
+|+.|+|||||+++|.+..+
T Consensus 32 ~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 32 VGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EECTTSSHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999976543
No 362
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.38 E-value=0.69 Score=47.78 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=19.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIA 39 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~ 39 (794)
.++| +|+.|+|||||++.| +|.+.
T Consensus 47 ~~~i---~G~nGsGKSTLlk~l---~Gl~~ 70 (271)
T 2ixe_A 47 VTAL---VGPNGSGKSTVAALL---QNLYQ 70 (271)
T ss_dssp EEEE---ECSTTSSHHHHHHHH---TTSSC
T ss_pred EEEE---ECCCCCCHHHHHHHH---hcCCC
Confidence 3556 999999999999999 45443
No 363
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=81.34 E-value=0.65 Score=47.83 Aligned_cols=20 Identities=50% Similarity=0.601 Sum_probs=17.0
Q ss_pred ccCCCCChhHHHHHHHHHcCCcc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGIIA 39 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i~ 39 (794)
+|+.|+|||||++.| +|.+.
T Consensus 39 iG~nGsGKSTLl~~i---~Gl~~ 58 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIV---AGLIE 58 (266)
T ss_dssp ECSTTSSHHHHHHHH---TTSSC
T ss_pred ECCCCCcHHHHHHHH---hCCCC
Confidence 999999999999998 45543
No 364
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=81.33 E-value=0.75 Score=43.60 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=20.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
+|+| +|..||||||++..|....|
T Consensus 6 ~i~i---~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVF---IGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred EEEE---EcCCCCCHHHHHHHHHHHcC
Confidence 4777 99999999999999965544
No 365
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=81.22 E-value=0.81 Score=42.55 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=18.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.+++ +|+.|+|||||+..+..
T Consensus 38 ~~~l---~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYV---WGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEE---ESSSTTTTCHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4666 89999999999999954
No 366
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=81.17 E-value=0.97 Score=43.14 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=20.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|++ .|..||||||++..|....|
T Consensus 7 ~~I~l---~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFV---LGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEE---EESTTSSHHHHHHHHHHHHC
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46777 99999999999999966545
No 367
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=81.07 E-value=0.93 Score=44.07 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|++ .|..||||||++..|....+
T Consensus 5 ~~I~i---~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAF---EGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEE---EcCCCCCHHHHHHHHHHHHh
Confidence 46777 99999999999999965544
No 368
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.05 E-value=0.76 Score=43.91 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=19.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
..|++ .|..||||||++..|....
T Consensus 4 ~~I~i---~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVV---TGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEE---ECCTTSCHHHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHH
Confidence 35777 9999999999999996543
No 369
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=81.03 E-value=0.69 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=19.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
..|++ +|..|+|||||+..|...
T Consensus 26 ~~i~l---~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWV---TGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 999999999999998543
No 370
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=81.01 E-value=2.9 Score=35.84 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=48.1
Q ss_pred EEeeecCCCCcceEEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003804 373 SKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (794)
Q Consensus 373 fK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI~ai~ 447 (794)
-+++..+..|. +|=|+|-+|+++++..++++..+ ..++.-++.+|-. ...+|+++.+|.=|+|.
T Consensus 12 r~vF~isk~g~-IAGc~V~~G~i~r~~~vRv~Rd~------~vI~eG~i~SLkr----~KddV~EV~~G~ECGi~ 75 (99)
T 1d1n_A 12 RQTFKVSKVGT-IAGCYVTDGKITRDSKVRLIRQG------IVVYEGEIDSLKR----YKDDVREVAQGYECGLT 75 (99)
T ss_dssp CCCCCCSSSCC-CEEEEECSSBCCSSSEEEEECSS------SEEEEEECSEEEC----SSSCCSCCBTTCEEEEE
T ss_pred EEEEEcCCceE-EEEEEEEcCEEEcCCeEEEEECC------EEEEEeEEhhhcc----cccccceECCCcEEEEE
Confidence 33334455676 99999999999999999997632 2344456777664 56789999999999985
No 371
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=80.99 E-value=0.72 Score=47.88 Aligned_cols=19 Identities=37% Similarity=0.267 Sum_probs=16.8
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|+|||||++.|
T Consensus 49 ~~~l---iG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 49 KWIL---YGLNGAGKTTLLNIL 67 (279)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 3556 999999999999999
No 372
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=80.92 E-value=0.87 Score=44.23 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=22.2
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
+...|++ .|..|+||||++..|....|
T Consensus 19 ~~~~I~l---~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLL---LGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 3457888 99999999999999966555
No 373
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=80.91 E-value=0.67 Score=47.35 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=16.4
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
++| +|+.|+|||||++.|
T Consensus 34 ~~l---~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 34 LAV---LGQNGCGKSTLLDLL 51 (253)
T ss_dssp EEE---ECCSSSSHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHH
Confidence 456 999999999999999
No 374
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=80.80 E-value=0.77 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
...|+| +|.+|+|||||++.|..
T Consensus 21 ~~~i~i---~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGI---SGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEE---EESTTSSHHHHHHHHHT
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHH
Confidence 356777 99999999999999953
No 375
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=80.63 E-value=3.5 Score=43.41 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.7
Q ss_pred ccCCCCChhHHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~ 34 (794)
.|++|+|||||+-+++..
T Consensus 34 ~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 34 AGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EESSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 899999999999888643
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=80.52 E-value=0.43 Score=45.98 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=21.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
...|++ .|..||||||++..|....|
T Consensus 9 ~~~I~l---~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFV---VGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEE---EECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 346778 99999999999999965555
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=80.47 E-value=0.97 Score=45.94 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=21.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCCc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGII 38 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i 38 (794)
..|+| +|+.|||||||+..|...-|..
T Consensus 28 ~~I~I---~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 28 PVITV---DGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHTTCE
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHhcCCC
Confidence 36788 9999999999999997555543
No 378
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=80.42 E-value=2 Score=44.38 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCccchHH-HHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh----cCCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~-e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~----~~~~~i-v~iNKiD~ 154 (794)
..|.+.||||||...... ........+|.+|+|+.+...-...+..+++.+.. .+++.+ +++|+.+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 468899999999642111 11123367999999998764333333333343332 356644 78999863
No 379
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=80.05 E-value=0.73 Score=44.99 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
..|+| +|..|+|||||+..|..
T Consensus 23 ~~i~i---~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGI---DGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEE---EECTTSSHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHH
Confidence 45777 99999999999999854
No 380
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=79.95 E-value=1.5 Score=47.94 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCCCCcc-------hhHHHHHHHHHhcCCc-----cEEEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR-----PVLTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~~gv~-------~qt~~~~~~~~~~~~~-----~iv~iNKiD~ 154 (794)
..|.+.|||||+... ..+..++..+|.+|+|+.+..-.. .....+++.+...+.+ .+.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 468899999999775 457778889999999998742211 1223344555555443 2458899874
No 381
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=79.93 E-value=1.1 Score=45.55 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
+.+.|+| .|.+||||||++..|....|
T Consensus 21 ~~~iI~I---~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGV---SGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEE---ECCCCCCHHHHHHHHHHHhh
Confidence 3467778 99999999999999966555
No 382
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=79.89 E-value=3.8 Score=40.93 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCcc-----c--hHHHHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 88 NEYLINLIDSPGHV-----D--FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 88 ~~~~inlIDTPGh~-----d--f~~e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
+.+.+.+||+||.. + ...++.. .....+|+|+++..|-..++...++.+...+++.. +++|+++..
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~--~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIK--ALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHH--HHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHH--HcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 46789999999742 1 1222222 23356899999998877777777777778888877 899999754
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=79.79 E-value=0.94 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.5
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
...|+| .|..||||||++..|..
T Consensus 4 ~~~I~i---~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVAL---TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEE---ECCTTSCHHHHHHHHHH
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHH
Confidence 356778 99999999999999843
No 384
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=79.68 E-value=1.1 Score=41.96 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
+|++ .|..||||||++..|....|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYL---IGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEE---ESCTTSCHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4677 99999999999999965544
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=79.67 E-value=0.87 Score=44.12 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
..|++ .|..||||||+++.|..
T Consensus 5 ~~I~l---~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVF---EGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHH
T ss_pred cEEEE---EcCCCCCHHHHHHHHHH
Confidence 46788 99999999999999954
No 386
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.65 E-value=1.1 Score=42.96 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
..+|++ +|..|+||||++..|...
T Consensus 10 ~~~I~l---~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILI---TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHHh
Confidence 356788 999999999999999655
No 387
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=79.64 E-value=2.5 Score=38.69 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
..+|.+ .|..|+|||+|+..+..
T Consensus 24 ~~~vll---~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWL---YGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEE---ESSTTSSHHHHHHHHHH
T ss_pred CCCEEE---ECCCCCCHHHHHHHHHH
Confidence 346777 99999999999999843
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=79.54 E-value=0.96 Score=44.49 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
+|++ .|..||||||++..|....|.
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIIL---LGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHHHCC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 5777 999999999999999765553
No 389
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=79.50 E-value=1.2 Score=43.15 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
...|++ .|..||||||++..|....|.
T Consensus 15 ~~~I~l---~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 15 VSVIFV---LGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp CEEEEE---ECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHHHcCc
Confidence 356777 999999999999999766553
No 390
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.48 E-value=0.99 Score=48.56 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|+.|||||||+..|+.
T Consensus 125 ~i~I---~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLV---TGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHh
Confidence 6777 99999999999999864
No 391
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.45 E-value=0.99 Score=44.56 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=21.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
...|++ .|..||||||++..|....|
T Consensus 4 ~~~I~l---~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVL---IGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 356888 99999999999999976555
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=79.44 E-value=0.83 Score=48.02 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
..|+| +|+.|||||||+..|...
T Consensus 81 ~iigI---~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISI---AGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEE---EECTTSSHHHHHHHHHHH
T ss_pred EEEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 999999999999999543
No 393
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=79.41 E-value=1.9 Score=43.12 Aligned_cols=42 Identities=5% Similarity=-0.077 Sum_probs=28.3
Q ss_pred cCceEEEEeCCCCcchhHHHHHHHHHhcCCccEEEEecCccc
Q 003804 114 TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (794)
Q Consensus 114 ~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~iv~iNKiD~~ 155 (794)
-+.-+++||-..-......+.++.+...+++.|++.-..|-.
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 356788999776554443345555556788988888777754
No 394
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=79.32 E-value=0.88 Score=46.74 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.8
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|+|||||+..|
T Consensus 32 ~~~i---~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 32 KVII---LGPNGSGKTTLLRAI 50 (263)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3556 999999999999999
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.00 E-value=1 Score=41.85 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=16.1
Q ss_pred ccCCCCChhHHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~ 34 (794)
+|+.|+|||||+++|.+.
T Consensus 29 ~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 799999999999999653
No 396
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.81 E-value=1 Score=42.85 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|.+ .|..|+||||++..|....|
T Consensus 12 ~~i~i---~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILL---TGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEE---EeCCCCCHHHHHHHHHHHhC
Confidence 35777 89999999999999965544
No 397
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=78.78 E-value=1.1 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|+| +|..|||||||+..|....+
T Consensus 3 li~I---~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLI---YGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCcCHHHHHHHHHhcCC
Confidence 3566 89999999999999976655
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=78.74 E-value=1.1 Score=45.22 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
.+.|+| .|+.|+||||++..|....|.
T Consensus 9 ~~~i~i---~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 9 SLVVAV---DGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CCEEEE---ECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 457888 999999999999999655553
No 399
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=78.71 E-value=1.2 Score=41.70 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
+|++ .|..||||||++..|....|
T Consensus 9 ~i~l---~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVL---IGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEE---ESCTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 6777 89999999999999865545
No 400
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=78.59 E-value=0.78 Score=49.46 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.++| +|+.|||||||++.|+
T Consensus 177 ~i~i---vG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 177 VIVV---AGETGSGKTTLMKALM 196 (361)
T ss_dssp CEEE---EESSSSCHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 6777 9999999999999995
No 401
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=78.47 E-value=1.1 Score=44.23 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcCCcc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIA 39 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g~i~ 39 (794)
.|.+ +|++||||+|.+..|...-|..+
T Consensus 2 ~Iil---~GpPGsGKgTqa~~La~~~g~~~ 28 (206)
T 3sr0_A 2 ILVF---LGPPGAGKGTQAKRLAKEKGFVH 28 (206)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHHCCeE
Confidence 4667 89999999999999987777543
No 402
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=78.36 E-value=2.1 Score=43.46 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCccchHH-HHHHhhhccCceEEEEeCCCCcchhHHHHHHHHHh----cCCccE-EEEecCcc
Q 003804 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 154 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~-e~~~~l~~~D~ailvvda~~gv~~qt~~~~~~~~~----~~~~~i-v~iNKiD~ 154 (794)
+.|.+.||||||...... ........+|.+|+|+.+...-...+..+++.+.. .+++.+ +++|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 458899999999643211 01112357999999998865433344444444433 255644 89999864
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=78.34 E-value=1.1 Score=43.04 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|++ .|..||||||++..|....|
T Consensus 13 ~~I~l---~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFI---IGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEE---EECTTSSHHHHHHHHHHHHT
T ss_pred CEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46778 99999999999999976555
No 404
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=78.34 E-value=1.2 Score=44.23 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=21.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|++ .|..||||||++..|....|
T Consensus 8 ~~I~l---~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVI---MGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEE---EECTTSSHHHHHHHHHHHSS
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 56788 99999999999999976555
No 405
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=78.29 E-value=1.2 Score=42.83 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=18.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.|++ .|..||||||+++.|...
T Consensus 2 ~I~l---~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITF---EGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 3666 899999999999999543
No 406
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=78.27 E-value=4 Score=43.55 Aligned_cols=42 Identities=17% Similarity=0.015 Sum_probs=35.1
Q ss_pred cCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 114 TDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 114 ~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
.+++++|.-+..-....+++.+..+.+.++|.. +|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 467888888877777788889999999999987 899998754
No 407
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=78.24 E-value=0.94 Score=47.26 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=16.9
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.++| +|+.|+|||||++.|
T Consensus 66 ~~~i---~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 66 LLAV---AGSTGAGKTSLLMMI 84 (290)
T ss_dssp EEEE---EESTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 4566 999999999999998
No 408
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=78.22 E-value=1.1 Score=42.96 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.|++ .|..||||||++..|..
T Consensus 2 ~I~l---~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAF---EGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 3667 89999999999999954
No 409
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=78.06 E-value=0.89 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
-+++| +|+.|+|||||+..|...
T Consensus 171 ~k~~I---vG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAI---LGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEE---ECCTTSHHHHHHHHHHHH
T ss_pred CeEEE---ECCCCCCHHHHHHHHHHH
Confidence 46788 999999999999999543
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=78.02 E-value=0.53 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.|+| .|..||||||+++.|...
T Consensus 2 ~I~i---~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAI---EGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEE---EEEEEEEHHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHHH
Confidence 3567 899999999999999543
No 411
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=78.01 E-value=0.93 Score=48.77 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
+++ +|+.|||||||++.|
T Consensus 33 ~~l---lGpsGsGKSTLLr~i 50 (359)
T 3fvq_A 33 LFI---IGASGCGKTTLLRCL 50 (359)
T ss_dssp EEE---EESTTSSHHHHHHHH
T ss_pred EEE---ECCCCchHHHHHHHH
Confidence 455 999999999999999
No 412
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.95 E-value=1.1 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|+.|||||||+..|+.
T Consensus 138 ~i~i---vG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILV---TGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEE---ECSSSSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHh
Confidence 5777 99999999999999964
No 413
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=77.87 E-value=0.99 Score=48.66 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=14.6
Q ss_pred ccCCCCChhHHHHHH
Q 003804 17 ANSTFAGKSTLTDSL 31 (794)
Q Consensus 17 vG~~~~GKTTL~~~L 31 (794)
+|+.|||||||+..|
T Consensus 60 iGpnGaGKSTLlr~i 74 (366)
T 3tui_C 60 IGASGAGKSTLIRCV 74 (366)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred EcCCCchHHHHHHHH
Confidence 999999999999998
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=77.84 E-value=1.2 Score=44.56 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=22.3
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
+..+|++ .|..|+||||++..|...-|
T Consensus 15 ~~~~I~l---~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVL---LGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 3457888 99999999999999976555
No 415
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=77.82 E-value=1.2 Score=42.33 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|++ .|.+||||||++..|....|
T Consensus 4 ~I~l---~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVL---VGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEE---ECSTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 3677 89999999999999965555
No 416
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=77.76 E-value=1 Score=48.45 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.7
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.+++ +|+.|||||||++.|
T Consensus 43 ~~~l---lGpnGsGKSTLLr~i 61 (355)
T 1z47_A 43 MVGL---LGPSGSGKTTILRLI 61 (355)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 3456 999999999999998
No 417
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=77.60 E-value=0.94 Score=45.84 Aligned_cols=66 Identities=9% Similarity=-0.034 Sum_probs=55.0
Q ss_pred eEEEEEEeccCcchhHHHHhhhcccceeeeeccCCCCcEEEEEEechhhhhCchHHHhhhcCCceEeee
Q 003804 680 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 748 (794)
Q Consensus 680 i~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~~y~~~Lrs~T~G~g~~~~ 748 (794)
-|++.|.+|.++.|++++.|.+..|.|.+++-.+ + ..+.+.+|-----.+.+.|++.|+|+|.+..
T Consensus 173 ~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~--~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 173 HMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQ--Q-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp CCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSS--B-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred eEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccC--C-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 4678899999999999999999889988776543 3 6678899988777889999999999997544
No 418
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=77.58 E-value=1.3 Score=41.61 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=19.8
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|++ .|..||||||++..|....|
T Consensus 4 ~I~l---~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFM---VGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEE---ESCTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4667 89999999999999965545
No 419
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.56 E-value=1.2 Score=45.86 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEcccccCCCCChhHHHHHHHHHcC
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
+++ +|+.|+|||||+.+|....+
T Consensus 47 vlL---~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLL---AGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEE---ESSTTSCHHHHHHHHHHHTT
T ss_pred EEE---ECCCCCcHHHHHHHHHHHcC
Confidence 777 99999999999999965443
No 420
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=77.52 E-value=1 Score=48.46 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
+++ +|+.|||||||++.|
T Consensus 32 ~~l---lGpnGsGKSTLLr~i 49 (359)
T 2yyz_A 32 VAL---LGPSGCGKTTTLLML 49 (359)
T ss_dssp EEE---ECSTTSSHHHHHHHH
T ss_pred EEE---EcCCCchHHHHHHHH
Confidence 455 999999999999999
No 421
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=77.47 E-value=1.3 Score=42.41 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.8
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
...|++ .|..|+||||++..|...
T Consensus 13 ~~~i~l---~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWL---TGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEE---ECCTTSSHHHHHHHHHHH
T ss_pred CcEEEE---EcCCCCCHHHHHHHHHHH
Confidence 356777 999999999999998543
No 422
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=77.45 E-value=8 Score=37.03 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
++.+ .|+.|+|||||+..+...
T Consensus 40 ~~ll---~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLF---SGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEE---ECSTTSSHHHHHHHHHHH
T ss_pred eEEE---ECCCCCCHHHHHHHHHHH
Confidence 3677 899999999999998543
No 423
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=77.27 E-value=0.73 Score=48.48 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=17.4
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.++| +|+.|||||||+..|+
T Consensus 82 ~vai---vG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 82 TLAL---VGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEE---ESSSCHHHHHHHHHHT
T ss_pred EEEE---ECCCCchHHHHHHHHH
Confidence 4666 9999999999999883
No 424
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=77.23 E-value=5.5 Score=42.33 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=19.7
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.-++.| .|+.|+|||||+..+...
T Consensus 44 ~~~vll---~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALL---YGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEE---CBCTTSSHHHHHHHHHHH
T ss_pred CCcEEE---ECCCCCCHHHHHHHHHHH
Confidence 346777 999999999999999643
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=77.15 E-value=1.2 Score=42.20 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=16.4
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|.+ .|..||||||++..|....|
T Consensus 6 ~~I~l---~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWI---NGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEE---ECCC----CHHHHHHHHHST
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 35677 89999999999999965544
No 426
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=76.99 E-value=1.1 Score=48.36 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
+++ +|+.|||||||++.|
T Consensus 32 ~~l---lGpnGsGKSTLLr~i 49 (362)
T 2it1_A 32 MAL---LGPSGSGKSTLLYTI 49 (362)
T ss_dssp EEE---ECCTTSSHHHHHHHH
T ss_pred EEE---ECCCCchHHHHHHHH
Confidence 455 999999999999999
No 427
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=76.86 E-value=1.3 Score=43.66 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.+++ +|+.|+|||||+..|+.
T Consensus 25 ~~~i---~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIAL---TGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHH
Confidence 3556 89999999999999863
No 428
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=76.77 E-value=1.1 Score=48.48 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
+++ +|+.|||||||++.|
T Consensus 32 ~~l---lGpnGsGKSTLLr~i 49 (372)
T 1g29_1 32 MIL---LGPSGCGKTTTLRMI 49 (372)
T ss_dssp EEE---ECSTTSSHHHHHHHH
T ss_pred EEE---ECCCCcHHHHHHHHH
Confidence 455 999999999999999
No 429
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=76.60 E-value=0.83 Score=45.68 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.4
Q ss_pred EEEEEcccccCCCCChhHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
..|+| .|..|||||||++.|.
T Consensus 21 ~~i~i---~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 21 FTVLI---EGNIGSGKTTYLNHFE 41 (230)
T ss_dssp EEEEE---ECSTTSCHHHHHHTTG
T ss_pred eEEEE---ECCCCCCHHHHHHHHH
Confidence 46777 9999999999999983
No 430
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=76.60 E-value=1.4 Score=45.82 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.6
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
...|.+ .|.+|||||||+..|....
T Consensus 33 ~~livl---~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLL---GGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEE---ECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHHh
Confidence 345666 8999999999999997654
No 431
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=76.60 E-value=1.1 Score=43.85 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=19.9
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
...|++ .|..||||||++..|...
T Consensus 9 ~~~I~l---~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVL---EGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEE---EESTTSSHHHHHHHHHHH
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHHH
Confidence 346778 999999999999999543
No 432
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=76.50 E-value=1.1 Score=48.38 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=16.2
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
+++ +|+.|||||||++.|
T Consensus 40 ~~l---lGpnGsGKSTLLr~i 57 (372)
T 1v43_A 40 LVL---LGPSGCGKTTTLRMI 57 (372)
T ss_dssp EEE---ECCTTSSHHHHHHHH
T ss_pred EEE---ECCCCChHHHHHHHH
Confidence 455 999999999999998
No 433
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.49 E-value=5.4 Score=52.06 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=19.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
+|.+ .|++|+|||+|+-+++..+
T Consensus 1429 ~vll---~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1429 IVEI---YGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHH
Confidence 5666 8999999999999997654
No 434
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=76.47 E-value=1.1 Score=48.47 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
+++ +|+.|||||||+..|
T Consensus 32 ~~l---lGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 32 VVF---VGPSGCGKSTLLRMI 49 (381)
T ss_dssp EEE---ECCTTSSHHHHHHHH
T ss_pred EEE---EcCCCchHHHHHHHH
Confidence 456 999999999999999
No 435
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=76.43 E-value=1.4 Score=43.70 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=20.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|++ .|..||||||++..|....|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILI---FGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4677 99999999999999966555
No 436
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.39 E-value=7.8 Score=40.23 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=19.6
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
..|.+ .|+.|+|||||+.++....
T Consensus 39 ~~vll---~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLL---FGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEE---ECCTTCCCHHHHHHHHHHH
T ss_pred CcEEE---ECCCCCCHHHHHHHHHHHh
Confidence 45677 8999999999999995443
No 437
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=76.27 E-value=6.9 Score=41.06 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.+|.+ .|.+|+|||+|+.++...
T Consensus 56 ~~vll---~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILF---SGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CeEEE---ECcCCCCHHHHHHHHHHH
Confidence 35777 899999999999999544
No 438
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=76.21 E-value=1.8 Score=42.06 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
...|++ .|..||||||++..|....|
T Consensus 12 ~~iIgl---tG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 12 HMVIGV---TGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 466777 99999999999999865434
No 439
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.08 E-value=1.3 Score=42.05 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=18.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
..|++ .|..||||||++..|..
T Consensus 6 ~~i~l---~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWL---TGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHH
T ss_pred cEEEE---ECCCCCCHHHHHHHHHH
Confidence 35667 89999999999999854
No 440
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=76.08 E-value=1.1 Score=47.49 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=16.5
Q ss_pred ccCCCCChhHHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~ 34 (794)
+|..|||||||++.|+..
T Consensus 10 ~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EESSSSSCHHHHHHHHHS
T ss_pred EecCCCCHHHHHHHHHhh
Confidence 799999999999999854
No 441
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=75.82 E-value=4.9 Score=41.54 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.++.+ .|++|+|||+|+.++...
T Consensus 68 ~~vll---~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 68 LHMSF---TGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CEEEE---EECTTSSHHHHHHHHHHH
T ss_pred ceEEE---ECCCCCCHHHHHHHHHHH
Confidence 46778 999999999999987543
No 442
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=75.74 E-value=2.2 Score=48.35 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=20.2
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
...|.+ +|.+|+||||++..|....
T Consensus 35 ~~lIvl---vGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVM---VGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEE---ECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHHH
Confidence 345667 8999999999999996544
No 443
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=75.69 E-value=8.2 Score=41.48 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=16.1
Q ss_pred ccCCCCChhHHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~ 34 (794)
.|++|+|||||+-+++..
T Consensus 80 ~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 80 YGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EcCCCCChHHHHHHHHHH
Confidence 799999999999998754
No 444
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=75.65 E-value=1.5 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.0
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.++| +|+.|||||||+.+|+..
T Consensus 169 ii~I---~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILV---TGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHHH
T ss_pred eEEE---ECCCCCCHHHHHHHHHhh
Confidence 4667 899999999999999754
No 445
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=75.21 E-value=1.5 Score=43.32 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=21.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
..|++ +|..||||||++..|....|.
T Consensus 6 ~~I~l---~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMI---SGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEE---EESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 46777 999999999999999766553
No 446
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=75.07 E-value=1.3 Score=44.97 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.4
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
...|.+ +|.+||||||++..|....+
T Consensus 32 ~~~i~l---~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILL---GGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEE---ESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 356777 99999999999999976544
No 447
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=74.99 E-value=1.7 Score=40.85 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
-++.+ .|+.|+|||||+..+...
T Consensus 44 ~~~ll---~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVL---IGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEE---ECCTTSCHHHHHHHHHHH
T ss_pred CceEE---ECCCCCCHHHHHHHHHHH
Confidence 45677 899999999999999643
No 448
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.91 E-value=1.6 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.8
Q ss_pred EEEcccccCCCCChhHHHHHHHHHc
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
+.+ +|++|+|||||+..+....
T Consensus 52 ~ll---~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLL---VGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEE---ECCTTSSHHHHHHHHHHHT
T ss_pred EEE---ECCCCCCHHHHHHHHHHHh
Confidence 677 9999999999999995443
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.64 E-value=1.5 Score=42.81 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=17.5
Q ss_pred EEEcccccCCCCChhHHHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
+++ +|+.|+|||||+..|+.
T Consensus 23 ~~i---~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQV---YGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEE---ECSTTSSHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHH
Confidence 455 89999999999999965
No 450
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=74.36 E-value=0.88 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=16.3
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
..-|+| .|.+||||||++..|..
T Consensus 5 ~~iIgI---tG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISV---TGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEE---ESCC---CCTHHHHHHH
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHH
Confidence 345777 89999999999999954
No 451
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.14 E-value=11 Score=42.49 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
-.+.+ .|++|+|||||+.++....|
T Consensus 78 ~~lLL---~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 78 RAAML---YGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SEEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 35666 89999999999999976664
No 452
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=74.11 E-value=1.6 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.3
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
+|+| +|..|+||||++..|....|
T Consensus 50 ~i~l---~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 50 SMYL---VGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CEEE---ECSTTSCHHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 5777 99999999999999965555
No 453
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=74.00 E-value=1.1 Score=50.76 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=17.8
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
+++| +|+.|||||||+++|+
T Consensus 262 ~i~I---~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 262 SAIV---VGETASGKTTTLNAIM 281 (511)
T ss_dssp CEEE---EESTTSSHHHHHHHHG
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 4777 9999999999999994
No 454
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=73.94 E-value=0.99 Score=48.41 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.8
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.+++ +|+.|||||||++.|
T Consensus 28 ~~~l---lGpnGsGKSTLLr~i 46 (348)
T 3d31_A 28 YFVI---LGPTGAGKTLFLELI 46 (348)
T ss_dssp EEEE---ECCCTHHHHHHHHHH
T ss_pred EEEE---ECCCCccHHHHHHHH
Confidence 3556 999999999999999
No 455
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=73.85 E-value=1.8 Score=42.63 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|++ .|..||||||++..|....|
T Consensus 6 ~~I~l---~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLIL---IGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEE---EECTTSSHHHHHHHHHHHHC
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46788 99999999999999966555
No 456
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=73.65 E-value=1.4 Score=47.95 Aligned_cols=20 Identities=40% Similarity=0.421 Sum_probs=17.1
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.++| +|+.|||||||+..|.
T Consensus 49 ~~~l---lGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 49 RVGL---LGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEE---EESTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCChHHHHHHHHh
Confidence 3556 9999999999999983
No 457
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=73.01 E-value=2.2 Score=43.39 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
..|++ .|.+||||||++..|...
T Consensus 5 ~lIvl---~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIIL---TGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEEE---EcCCCCCHHHHHHHHHHH
Confidence 35777 899999999999999654
No 458
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=72.82 E-value=2 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|+| .|..||||||++..|....|
T Consensus 4 ~i~i---~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTI---DGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 5677 99999999999999966555
No 459
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=72.67 E-value=1.7 Score=46.88 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=16.0
Q ss_pred ccCCCCChhHHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~ 34 (794)
+|+.|||||||++++.+.
T Consensus 29 ~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 899999999999998643
No 460
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=72.28 E-value=1.7 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.5
Q ss_pred eEEEEEcccccCCCCChhHHHHHHH
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
...|+| .|..||||||++..|.
T Consensus 75 ~~iI~I---~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGL---TGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEE---EECTTSCHHHHHHHHH
T ss_pred CEEEEE---ECCCCCCHHHHHHHHH
Confidence 467888 9999999999999996
No 461
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=72.25 E-value=1.6 Score=48.55 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=18.2
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|+.|||||||+..|+.
T Consensus 140 ~v~I---vGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVI---VGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEE---EESTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHhC
Confidence 4667 99999999999999954
No 462
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=72.24 E-value=2 Score=42.71 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.2
Q ss_pred ccCCCCChhHHHHHHHHHcCCc
Q 003804 17 ANSTFAGKSTLTDSLVAAAGII 38 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g~i 38 (794)
+|++||||+|.+..|...-|..
T Consensus 35 lGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 35 LGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp ECCTTCCHHHHHHHHHHHHCCE
T ss_pred ECCCCCCHHHHHHHHHHHHCCc
Confidence 8999999999999997766654
No 463
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=72.22 E-value=1.8 Score=44.88 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.1
Q ss_pred EEEcccccCCCCChhHHHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
++| +|+.|+|||||+..|+.
T Consensus 38 ~~i---~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 38 IMV---TSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEE---EESTTSSHHHHHHHHHH
T ss_pred EEE---EeCCCCCHHHHHHHHHH
Confidence 456 89999999999999853
No 464
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.07 E-value=2 Score=44.08 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.8
Q ss_pred EEEcccccCCCCChhHHHHHHHHHc
Q 003804 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
+.+ +|+.|+|||||+..+....
T Consensus 76 vll---~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLL---VGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEE---ECCTTSSHHHHHHHHHHHT
T ss_pred EEE---ECCCcChHHHHHHHHHHHc
Confidence 777 9999999999999996443
No 465
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=71.85 E-value=1.9 Score=42.83 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=17.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|+.|+|||||+..|+.
T Consensus 26 ~~~i---~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEM---FGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHHH
Confidence 3456 89999999999999964
No 466
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=71.63 E-value=1.8 Score=45.83 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.1
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.+++ .|++|+|||||+..+....+
T Consensus 53 ~~ll---~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 53 HVLL---AGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CEEE---ESSTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCcHHHHHHHHHHHhC
Confidence 4667 89999999999999976554
No 467
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=71.54 E-value=7 Score=41.12 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=34.1
Q ss_pred CceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCccc
Q 003804 115 DGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (794)
Q Consensus 115 D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD~~ 155 (794)
+++++|.-+..-....+++.++.+.+.++|.. +|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 48888888876667788888999999999987 899998754
No 468
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=71.45 E-value=1 Score=48.47 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=16.3
Q ss_pred EEEcccccCCCCChhHHHHHH
Q 003804 11 VCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 11 v~i~~~vG~~~~GKTTL~~~L 31 (794)
+++ +|+.|||||||++.|
T Consensus 34 ~~l---lGpnGsGKSTLLr~i 51 (353)
T 1oxx_K 34 FGI---LGPSGAGKTTFMRII 51 (353)
T ss_dssp EEE---ECSCHHHHHHHHHHH
T ss_pred EEE---ECCCCCcHHHHHHHH
Confidence 456 999999999999998
No 469
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=71.24 E-value=2.3 Score=41.03 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.5
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
..+.+ .|++|+|||||+.++...
T Consensus 55 ~~~~l---~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYL---HGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CeEEE---ECCCCCCHHHHHHHHHHH
Confidence 56777 899999999999998643
No 470
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=71.24 E-value=3.7 Score=37.47 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=17.6
Q ss_pred EEEEEcccccCCCCChhHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.+|.+ .|..|+|||+++..+
T Consensus 28 ~~vll---~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 28 SPVFL---TGEAGSPFETVARYF 47 (143)
T ss_dssp SCEEE---EEETTCCHHHHHGGG
T ss_pred CcEEE---ECCCCccHHHHHHHH
Confidence 46777 899999999999988
No 471
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.20 E-value=2.5 Score=44.99 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=20.9
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|+| +|+.|||||||+..|...-+
T Consensus 8 ~lI~I---~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVI---VGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEE---ECCCcCcHHHHHHHHHHHcC
Confidence 35677 99999999999999976654
No 472
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=70.91 E-value=2 Score=42.01 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=18.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
..|++ .|..|+||||++..|..
T Consensus 26 ~~i~~---~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWL---TGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHH
T ss_pred CEEEE---ECCCCCCHHHHHHHHHH
Confidence 46777 89999999999999843
No 473
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.36 E-value=5.1 Score=45.02 Aligned_cols=19 Identities=11% Similarity=-0.122 Sum_probs=16.6
Q ss_pred ccCCCCChhHHHHHHHHHc
Q 003804 17 ANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~ 35 (794)
.|.+|+|||||+-.++...
T Consensus 248 ~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 248 TSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp EESSCHHHHHHHHHHHHHH
T ss_pred eecCCCCchHHHHHHHHHH
Confidence 7999999999999987643
No 474
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=70.21 E-value=2.5 Score=42.71 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
.+.+ .|++|+|||||+.++....
T Consensus 47 ~vll---~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLM---VGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHH
T ss_pred eEEE---ECcCCCCHHHHHHHHHHHc
Confidence 5777 9999999999999995443
No 475
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=69.69 E-value=9.9 Score=38.30 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=19.8
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
.+|.+ .|.+|+|||+|+.++....
T Consensus 30 ~~vll---~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLI---IGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEE---ECCTTSCHHHHHHHHHHTS
T ss_pred CCEEE---ECCCCCcHHHHHHHHHHhc
Confidence 46677 8999999999999996543
No 476
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=69.54 E-value=2.4 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
.++| +|+.|+|||||+..|....
T Consensus 73 ~~gI---iG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGI---FAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEE---EECTTSSHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHhcCC
Confidence 5677 9999999999999997654
No 477
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=69.49 E-value=2.1 Score=40.22 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.2
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
-++.+ .|+.|+|||||+..+...
T Consensus 44 ~~vll---~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPIL---LGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEE---ESCGGGCHHHHHHHHHHH
T ss_pred CceEE---ECCCCCCHHHHHHHHHHH
Confidence 45677 899999999999999543
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=69.40 E-value=2.4 Score=41.51 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.8
Q ss_pred ccCCCCChhHHHHHHHHHcC
Q 003804 17 ANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~~~g 36 (794)
+|+.|+||||+++++.+..+
T Consensus 29 ~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 29 IGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp ECCTTSSHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHhc
Confidence 79999999999999865433
No 479
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=69.39 E-value=2.6 Score=41.43 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.3
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHH
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
-.+.+ .|+.|+|||||+..+...
T Consensus 53 ~~~ll---~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYL---WGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CeEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 899999999999999543
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=69.16 E-value=2.2 Score=47.69 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=17.9
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|+.|+|||||+..|..
T Consensus 31 ~~~l---iG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTL---SGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHH
T ss_pred eEEE---ECCCCCcHHHHHHHHhc
Confidence 4566 99999999999999854
No 481
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=69.12 E-value=2.9 Score=41.71 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=20.6
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
-..|++ .|..|+||||++..|...-
T Consensus 26 g~~i~i---~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITF---EGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEE---ECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEE---EcCCCCCHHHHHHHHHHHH
Confidence 356777 9999999999999996544
No 482
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=69.12 E-value=2.8 Score=41.80 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=21.9
Q ss_pred eEEEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 8 ~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
...|+| +|..|+||||++..|....|.
T Consensus 16 ~~~i~i---~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 16 TIQIAI---DGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CCEEEE---ECSSCSSHHHHHHHHHHHHCC
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHHHcCC
Confidence 356778 999999999999999665553
No 483
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=68.50 E-value=2.3 Score=43.65 Aligned_cols=21 Identities=38% Similarity=0.262 Sum_probs=17.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~ 33 (794)
.++| +|+.|+|||||+..++.
T Consensus 32 i~~i---~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGAL---VSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEE---EESTTSSHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHH
Confidence 3455 89999999999999864
No 484
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=68.08 E-value=3.3 Score=43.77 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
.|+| +|+.|+|||||+..|....+
T Consensus 7 ~i~i---~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFL---MGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHSC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 5677 89999999999999977655
No 485
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=67.89 E-value=2.6 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.+++ +|++|+|||||+..|...
T Consensus 171 ~i~l---~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLF---KGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 5666 899999999999999653
No 486
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=67.64 E-value=12 Score=41.46 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.2
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
++.+ .|++|+|||||+..+....+
T Consensus 52 ~vLL---~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMIL---WGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred EEEE---ECCCCCcHHHHHHHHHHHhC
Confidence 6777 99999999999999965543
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=67.47 E-value=2.6 Score=40.37 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=15.9
Q ss_pred ccCCCCChhHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~ 33 (794)
.|++|+|||||+-.|+.
T Consensus 22 ~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 22 TGEANIGKSELSLALID 38 (181)
T ss_dssp EESSSSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 89999999999999975
No 488
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=67.36 E-value=2.7 Score=43.55 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
.|.+ .|.+||||||++..|...
T Consensus 4 ~I~l---~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILT---IGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHh
Confidence 4667 899999999999999653
No 489
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=67.36 E-value=2.5 Score=48.65 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.7
Q ss_pred EEEEcccccCCCCChhHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLV 32 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll 32 (794)
.+++ +|+.|+|||||++.|+
T Consensus 371 ~~~i---vG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 371 TVAL---VGRSGSGKSTIANLFT 390 (582)
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 5667 9999999999999994
No 490
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=67.32 E-value=4.3 Score=44.06 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCccchHHHHHHhhhccCceEEEEeCC
Q 003804 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 124 (794)
Q Consensus 88 ~~~~inlIDTPGh~df~~e~~~~l~~~D~ailvvda~ 124 (794)
..|.+.|||||+... ..+..++..+|.+|+|+.+.
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPA 277 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCS
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCc
Confidence 468899999999875 34677888999999999875
No 491
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=67.05 E-value=10 Score=39.37 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=20.0
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
.+|.| .|.+|+|||+++.++....
T Consensus 26 ~~vLi---~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 26 ATVLI---HGDSGTGKELVARALHACS 49 (304)
T ss_dssp SCEEE---ESCTTSCHHHHHHHHHHHS
T ss_pred CcEEE---ECCCCchHHHHHHHHHHhC
Confidence 46777 8999999999999996543
No 492
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=66.72 E-value=2.7 Score=44.65 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=15.5
Q ss_pred ccCCCCChhHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~ 33 (794)
+|+.|+|||||++++.+
T Consensus 29 ~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 29 IGQNGSGKSSLLDAILV 45 (339)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 79999999999999854
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=66.66 E-value=3.3 Score=41.53 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=22.0
Q ss_pred eeEEEEEcccccCCCCChhHHHHHHHHHcCC
Q 003804 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (794)
Q Consensus 7 ~~~~v~i~~~vG~~~~GKTTL~~~Ll~~~g~ 37 (794)
...++++ +|.+||||||++..|...-|.
T Consensus 7 ~~~~~~~---~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 7 HHMRLIL---LGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp --CEEEE---ECCTTSCHHHHHHHHHHHHTC
T ss_pred cccceee---ECCCCCCHHHHHHHHHHHhCC
Confidence 3467777 999999999999999766554
No 494
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=66.58 E-value=2.9 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=19.5
Q ss_pred EEEEcccccCCCCChhHHHHHHHHHc
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
.++| +|+.|+|||||++.|....
T Consensus 159 ~~~I---vG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGL---FAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEE---EECTTSSHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHhccc
Confidence 5677 9999999999999996654
No 495
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.54 E-value=2.9 Score=40.99 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEEcccccCCCCChhHHHHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~Ll~~ 34 (794)
-|+| +|++|+|||||+..|...
T Consensus 36 ~ilI---~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLI---TGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEE---ECCCTTTTHHHHHHHHTT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHh
Confidence 4667 999999999999999643
No 496
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=66.18 E-value=2.5 Score=48.62 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=17.2
Q ss_pred EEEEcccccCCCCChhHHHHHH
Q 003804 10 SVCLGPDANSTFAGKSTLTDSL 31 (794)
Q Consensus 10 ~v~i~~~vG~~~~GKTTL~~~L 31 (794)
.+++ +|+.|+|||||++.|
T Consensus 371 ~~~i---vG~sGsGKSTLl~~l 389 (582)
T 3b60_A 371 TVAL---VGRSGSGKSTIASLI 389 (582)
T ss_dssp EEEE---EECTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4667 999999999999998
No 497
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=65.84 E-value=3 Score=41.41 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=15.2
Q ss_pred ccCCCCChhHHHHHHHH
Q 003804 17 ANSTFAGKSTLTDSLVA 33 (794)
Q Consensus 17 vG~~~~GKTTL~~~Ll~ 33 (794)
+|++|+|||||+.+++.
T Consensus 29 ~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 29 SGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999988854
No 498
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=65.83 E-value=5.4 Score=42.68 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=34.2
Q ss_pred ccCceEEEEeCCCCcchhHHHHHHHHHhcCCccE-EEEecCc
Q 003804 113 ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 153 (794)
Q Consensus 113 ~~D~ailvvda~~gv~~qt~~~~~~~~~~~~~~i-v~iNKiD 153 (794)
.+|.+++|+.+.......+.+.++.+...+++.. +|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 5788999999776666678888888888999877 8999997
No 499
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=65.44 E-value=3 Score=40.86 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHcC
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~g 36 (794)
..|+| .|..|+||||++..|....|
T Consensus 4 ~~i~i---~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIAL---DGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEE---ECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 45777 99999999999999866555
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=65.40 E-value=3 Score=41.73 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.1
Q ss_pred EEEEEcccccCCCCChhHHHHHHHHHc
Q 003804 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (794)
Q Consensus 9 ~~v~i~~~vG~~~~GKTTL~~~Ll~~~ 35 (794)
..|++ .|..|+||||+++.|...-
T Consensus 3 ~~i~~---~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSI---EGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEE---EECTTSSHHHHHHHHHHHC
T ss_pred eEEEE---EcCCCCCHHHHHHHHHHHc
Confidence 45777 8999999999999996554
Done!