Query 003805
Match_columns 794
No_of_seqs 376 out of 2165
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 12:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 7E-124 1E-128 1054.6 53.1 722 1-773 3-758 (1180)
2 KOG1046 Puromycin-sensitive am 100.0 8.1E-81 1.8E-85 744.9 46.7 586 13-720 29-634 (882)
3 TIGR02412 pepN_strep_liv amino 100.0 3.6E-76 7.8E-81 706.4 52.0 566 17-719 12-600 (831)
4 PRK14015 pepN aminopeptidase N 100.0 4E-75 8.7E-80 689.3 58.3 564 14-701 14-609 (875)
5 TIGR02414 pepN_proteo aminopep 100.0 3.8E-73 8.3E-78 670.3 59.1 543 16-682 4-566 (863)
6 TIGR02411 leuko_A4_hydro leuko 100.0 2.3E-67 5.1E-72 606.2 42.6 434 14-518 5-452 (601)
7 COG0308 PepN Aminopeptidase N 100.0 5.5E-66 1.2E-70 617.8 48.6 463 24-574 25-509 (859)
8 PF01433 Peptidase_M1: Peptida 100.0 1.9E-59 4.1E-64 524.1 26.8 372 15-442 2-390 (390)
9 KOG1047 Bifunctional leukotrie 100.0 6E-52 1.3E-56 441.6 29.0 441 1-517 1-460 (613)
10 PF13485 Peptidase_MA_2: Pepti 98.9 9.4E-10 2E-14 102.1 5.0 102 346-465 26-128 (128)
11 COG3975 Predicted protease wit 98.6 1.9E-06 4.1E-11 94.2 17.8 225 277-516 182-434 (558)
12 PF11838 ERAP1_C: ERAP1-like C 96.8 0.012 2.7E-07 63.8 13.1 139 638-787 1-157 (324)
13 PF07607 DUF1570: Protein of u 94.8 0.022 4.8E-07 52.4 2.9 38 348-385 4-43 (128)
14 KOG1932 TATA binding protein a 94.7 0.032 6.9E-07 66.8 4.7 100 433-538 444-554 (1180)
15 PF10460 Peptidase_M30: Peptid 94.5 0.3 6.5E-06 53.0 11.0 137 346-509 140-285 (366)
16 PF13646 HEAT_2: HEAT repeats; 94.5 0.16 3.5E-06 43.2 7.5 71 659-737 3-73 (88)
17 PF05299 Peptidase_M61: M61 gl 94.1 0.023 4.9E-07 51.8 1.2 42 347-388 6-58 (122)
18 PF04450 BSP: Peptidase of pla 93.6 1.3 2.8E-05 44.5 13.0 110 343-504 94-204 (205)
19 PRK09687 putative lyase; Provi 83.6 3.3 7.2E-05 44.0 7.4 70 661-737 165-234 (280)
20 PF13646 HEAT_2: HEAT repeats; 79.8 4.4 9.6E-05 34.1 5.6 54 659-716 35-88 (88)
21 PF10023 DUF2265: Predicted am 78.3 2.9 6.2E-05 44.9 4.7 38 345-388 165-202 (337)
22 PF11940 DUF3458: Domain of un 76.2 31 0.00067 38.1 12.1 44 639-682 69-112 (367)
23 PF10026 DUF2268: Predicted Zn 76.0 9.9 0.00021 38.0 7.6 40 346-385 66-109 (195)
24 PF02985 HEAT: HEAT repeat; I 74.8 4.5 9.8E-05 27.0 3.3 25 693-719 4-28 (31)
25 PRK09687 putative lyase; Provi 72.2 22 0.00048 37.7 9.6 53 663-719 135-187 (280)
26 smart00567 EZ_HEAT E-Z type HE 71.3 4.3 9.3E-05 26.8 2.5 27 705-735 1-27 (30)
27 PF03130 HEAT_PBS: PBS lyase H 71.0 5.3 0.00012 25.8 2.8 26 707-736 1-26 (27)
28 COG4324 Predicted aminopeptida 69.1 5.1 0.00011 40.9 3.6 36 346-387 198-233 (376)
29 PF13513 HEAT_EZ: HEAT-like re 65.6 18 0.00039 27.5 5.4 27 690-718 29-55 (55)
30 PRK13800 putative oxidoreducta 64.8 16 0.00034 45.7 7.6 86 661-771 780-865 (897)
31 PF03272 Enhancin: Viral enhan 62.6 1.2E+02 0.0025 37.2 13.9 119 265-385 144-276 (775)
32 KOG0567 HEAT repeat-containing 60.6 11 0.00023 39.0 4.1 53 668-722 199-251 (289)
33 PF12315 DUF3633: Protein of u 59.1 20 0.00044 35.7 5.6 41 346-388 94-134 (212)
34 smart00731 SprT SprT homologue 56.2 19 0.00042 34.0 4.9 65 287-359 5-73 (146)
35 PF13699 DUF4157: Domain of un 51.7 16 0.00035 30.6 3.1 67 288-357 6-73 (79)
36 PRK04860 hypothetical protein; 49.1 42 0.00092 32.3 6.0 68 282-358 6-76 (160)
37 PRK13800 putative oxidoreducta 45.6 36 0.00077 42.6 6.2 51 665-719 816-866 (897)
38 PF12725 DUF3810: Protein of u 45.5 22 0.00048 38.4 3.8 46 347-405 198-243 (318)
39 PF01863 DUF45: Protein of unk 45.2 42 0.00091 33.5 5.7 68 279-360 108-179 (205)
40 COG1413 FOG: HEAT repeat [Ener 44.8 1.1E+02 0.0023 33.2 9.3 72 657-737 45-116 (335)
41 PF06114 DUF955: Domain of unk 39.3 29 0.00064 30.7 3.2 18 345-362 42-59 (122)
42 PF10263 SprT-like: SprT-like 36.9 46 0.001 31.6 4.3 16 344-359 59-74 (157)
43 PF01447 Peptidase_M4: Thermol 35.5 1.4E+02 0.003 28.5 7.1 75 275-357 66-147 (150)
44 PF01435 Peptidase_M48: Peptid 30.7 60 0.0013 32.7 4.2 19 346-364 90-108 (226)
45 PHA02456 zinc metallopeptidase 28.0 39 0.00084 29.8 1.8 12 346-357 80-91 (141)
46 COG3943 Virulence protein [Gen 26.7 1.2E+02 0.0026 30.7 5.1 118 658-787 132-256 (329)
47 KOG2259 Uncharacterized conser 26.4 37 0.0008 39.5 1.8 45 690-736 374-420 (823)
48 COG3227 LasB Zinc metalloprote 26.3 1.9E+02 0.0041 32.7 7.0 105 272-384 265-377 (507)
49 PF13574 Reprolysin_2: Metallo 25.5 40 0.00086 32.9 1.6 12 346-357 112-123 (173)
50 KOG4535 HEAT and armadillo rep 25.0 33 0.00072 38.4 1.0 74 690-771 574-651 (728)
51 PF07571 DUF1546: Protein of u 24.9 79 0.0017 27.3 3.2 41 704-744 19-61 (92)
52 PRK03982 heat shock protein Ht 23.6 1.3E+02 0.0029 31.9 5.4 16 345-360 125-140 (288)
53 PRK04351 hypothetical protein; 23.5 87 0.0019 29.8 3.4 11 346-356 62-72 (149)
54 PRK03001 M48 family peptidase; 23.3 1.4E+02 0.003 31.7 5.3 15 345-359 124-138 (283)
55 PRK01345 heat shock protein Ht 22.4 1.3E+02 0.0028 32.5 5.0 67 285-360 69-139 (317)
56 COG4783 Putative Zn-dependent 21.9 70 0.0015 36.1 2.8 53 301-357 90-142 (484)
57 PF08325 WLM: WLM domain; Int 20.4 62 0.0013 32.0 1.8 16 346-361 83-98 (186)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=6.6e-124 Score=1054.56 Aligned_cols=722 Identities=38% Similarity=0.629 Sum_probs=577.9
Q ss_pred CCCCCCCCC----cCCCCCCCCeEEEEEEEEEE-EeccCcEEEEEEEEEEE--cCCcceEEEeccCceeeEEEEcCeeee
Q 003805 1 MAKPRKPKN----EETKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIA--VPDIGIVGLHAENLGIESVLVDGEPTE 73 (794)
Q Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~--~~~~~~I~L~~~~l~I~~V~v~g~~~~ 73 (794)
|+++|+.++ ++..+.+++..++||.|+|+ ||+.++++.|.++|+|. ++++..|.|||++|+|.+|.|+|....
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 456665555 33456677788999999999 99999999999999998 468999999999999999999999999
Q ss_pred eeeCCCCcccchhhhhccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhhhhhhccccCCCCCccCCC
Q 003805 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (794)
Q Consensus 74 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~ 153 (794)
|.|+++.+..+..+. |..+.. +..........|.. ...+.|+|.|.++++.... +.+ ..
T Consensus 83 f~y~d~~q~~~~~~~-~~~~l~-~~s~~~~~~~~y~~--l~~~~g~L~I~ipk~~~~~--~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDPTQNDCTDEI-WQRVLD-PASQSHFLAVQYED--LDEDNGELLIKIPKESKKV--GEE---------------LK 141 (1180)
T ss_pred eeecchhhhhhhhhh-hhhhhh-hhhhhhhHHHhhhc--cccCCCeEEEEcCchhhhh--hhh---------------cc
Confidence 999988665553322 221111 10111111112221 1224678999876532111 110 01
Q ss_pred ceEEEEEEEEeccCcceEeeec---------eEeecccc--CCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceee
Q 003805 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (794)
Q Consensus 154 ~~~~~~~y~~~~~~~G~~f~~~---------~~~T~~ep--~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~ 222 (794)
...++|+|.+++|..|++|++. +++|.+.+ .+||+||||+|+++++|||+|++++|++++++++|++.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2347799999999999999864 34555543 368999999999999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEecCCCCcceeEEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 003805 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (794)
Q Consensus 223 ~~~~~~~~~~~~~~f~~t~p~s~yliafavG~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~ 302 (794)
++.++ |.++++++|..+.|+++..||||||+|+.+..+.+.++++||+|+..+.+++++-.+.++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 99886 78899999999999999999999999999988888999999999999999999999999999999999988999
Q ss_pred CCccEEEECCCCcccccccccchhhhccccccCcccchhhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHH
Q 003805 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (794)
Q Consensus 303 ~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~ 382 (794)
+.|++||||+.+.-- ...++|.|+++++||+.+++|+.+.++..+|..||.||||+++||..|+|.||.+|+|.||..
T Consensus 301 ~~~k~VFvd~~~~~i--~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAVEI--SSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCccee--eecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 999999999644322 233469999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCchhHHHHHHHHhcchhhhcc-CCCcccCCCCccccCCCCcccccccceehhhHHHHHHHHHHhh----ChHH
Q 003805 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (794)
Q Consensus 383 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mLe~~l----G~e~ 457 (794)
+++++++|+|+|||+.++.+++++..|. .++..+.. ++++.. .| -.|+++.+|.+.+++ |.-.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence 9999999999999999999999988877 34444431 111110 01 245666655555544 2233
Q ss_pred HHHHHHHHHHhhhcCC-CCCCCCHHHHHHHHHHhcCCCcccHHhHHhhhccCCCceEEEEEEEEecCCcEEEEEEEeecC
Q 003805 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (794)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~~~st~~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~i~q~~~ 536 (794)
....+++++...+.++ .+...+.+.|+++++.++. ..++.||++|+++.|+|.+.+.+.||++++.|++.+.|...
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 4445555555554444 1222344555555555542 12589999999999999999999999999999999999554
Q ss_pred CCCCC-CCcccc-----CCCCCC-CC---CCCCCCccceEEEEeccCCcccccccccCCCcceEEEeeecccchhhhhcC
Q 003805 537 VKPDS-RTPVLS-----SNTDSE-NR---DGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (794)
Q Consensus 537 ~~~~~-~~~~~~-----~~~~~~-~~---~~~~~~~~pltiri~e~dg~~eh~~~~~~~~~~~~~~i~~~~k~~~~r~~k 606 (794)
....+ +..+++ ...+.+ .. .+...|+||||||+||.||+|+|+++ | ++.|+++||+|||| +|.+|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~lq-i-~~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTLQ-I-DGDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeEE-e-cCcccccceeeccc---ccccC
Confidence 33222 111110 001111 11 12245999999999999999999874 4 56699999999999 45577
Q ss_pred CCCCCCCCCCCCCCCcccccccccCCCCCeeEEEecCCCceeEEEeccCchHHHHHHHcccCChHHHHHHHHHHHcCCCC
Q 003805 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (794)
Q Consensus 607 ~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wIr~D~~~~~~~~v~~~~~~~m~~~qL~~d~dv~aq~~a~~~l~~~~~~ 686 (794)
+||.+..+|||++.| ++.+| .++|++|||+||||+|||+++++||++||++||++||||+||+|||++|...|++
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 788888999998877 76766 3799999999999999999999999999999999999999999999999998765
Q ss_pred chhHHhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003805 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEVIAL 766 (794)
Q Consensus 687 ~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~i~~~n~f~~~~~y~~~kai~~ 766 (794)
..+++|+|+|.|+|||||||++||.||+++++++.+|.|++||+++|+++||+.+++|||||||+||++|||||+||.
T Consensus 674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 466999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCh
Q 003805 767 RLFHMPL 773 (794)
Q Consensus 767 a~~~~~~ 773 (794)
|||.+|.
T Consensus 752 a~a~lR~ 758 (1180)
T KOG1932|consen 752 AFASLRG 758 (1180)
T ss_pred HHHHhcc
Confidence 9999854
No 2
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-81 Score=744.94 Aligned_cols=586 Identities=18% Similarity=0.247 Sum_probs=446.8
Q ss_pred CCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhcc
Q 003805 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWR 91 (794)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~~~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~ 91 (794)
++....++|+||+|.|.+++....|.|.+.|.+.+ .+++.|+||++++.|.++.+......-.-... ..
T Consensus 29 ~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~---~~------- 98 (882)
T KOG1046|consen 29 YRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLE---VS------- 98 (882)
T ss_pred ccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccc---cc-------
Confidence 46678999999999999999999999999999998 46899999999999999987542211000000 00
Q ss_pred ccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhhhhhhccccCCCCCccCCCc-eEEEEEEEEeccCcce
Q 003805 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNV-KLVRIDYWVEKVEVGI 170 (794)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~-~~~~~~y~~~~~~~G~ 170 (794)
.........+.+.+.. .+..+. .+++ .+.|.|.++... |+|+..|...+ .|.
T Consensus 99 -------------------~~~~~~~~~l~~~~~~---~l~~~~-~y~L--~i~f~g~l~~~~~G~y~s~y~~~~--~~~ 151 (882)
T KOG1046|consen 99 -------------------VEEKEQEETLVFPLNE---TLLAGS-SYTL--TIEFTGKLNDSSEGFYRSSYTDSE--GSE 151 (882)
T ss_pred -------------------ccccccceEEEEEccc---ccccCC-eEEE--EEEEeEeecCCcceeeeecccCCC--Cce
Confidence 0000000124443322 122221 1333 467889888775 99999997533 231
Q ss_pred EeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeEEE
Q 003805 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (794)
Q Consensus 171 ~f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliaf 250 (794)
+.++.||+||++||++|||||+|+.||||.|+|.+|++++|+|||+.+.+... ++++++.+|+.|++||+|++||
T Consensus 152 ---~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~~--~~~~~~~~F~~Tp~MstYLvAf 226 (882)
T KOG1046|consen 152 ---KSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEPV--DDGWKTTTFEKTPKMSTYLVAF 226 (882)
T ss_pred ---EEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCcccccccc--cCCeeEEEEEecCCCchhhhee
Confidence 57899999999999999999999999999999999999999999999877653 3459999999999999999999
Q ss_pred EEeeceEeecCC--CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh
Q 003805 251 AVAPFEVLPDHH--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (794)
Q Consensus 251 avG~f~~~~~~~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~ 328 (794)
+||+|+..+... ++++++|++|+...+..++++.+.++|+||+++||++||++|+|+|+||++..++|||| ||++|
T Consensus 227 ~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENw--GLvty 304 (882)
T KOG1046|consen 227 AVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENW--GLVTY 304 (882)
T ss_pred eeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcC--cceee
Confidence 999999987665 47899999999999999999999999999999999999999999999999999999999 79999
Q ss_pred -ccccccCcccchhhh--hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHhcch
Q 003805 329 -SSQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405 (794)
Q Consensus 329 -~~~lL~~~~~~~~~~--~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~~~~~~~~~ 405 (794)
+..+|+++....... ....+||||||||||||+|||+||+|+|||||||+||+++.++..++.+...-. .....+
T Consensus 305 re~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~--~~~~~l 382 (882)
T KOG1046|consen 305 RETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQ--FLLENL 382 (882)
T ss_pred eehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHH--HHHHHH
Confidence 678999986654433 345699999999999999999999999999999999999999988766543111 111111
Q ss_pred hhhccCCCcccCCCCccccC-----CCCcccccccceehhhHHHHHHHHHHhhChHHHHHHHHHHHHhhhcCCCCCCCCH
Q 003805 406 CKADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLST 480 (794)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~f~~i~Y~Kg~~vl~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st 480 (794)
..++..++..+++++ .+.++.++|+.++|.||++|||||+..+|++.|++||+.||.+++++| +++
T Consensus 383 -----~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~n----a~~ 453 (882)
T KOG1046|consen 383 -----ERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSN----AKT 453 (882)
T ss_pred -----HHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCC----CCc
Confidence 112223333333333 234556789999999999999999999999999999999999999997 567
Q ss_pred HHHHHHHHHhcCCCcccHHhHHhhhccCCCceEEEEEEEEecCCcEEEEEEEeecCCCCCCCCccccCCCCCCCCCCCCC
Q 003805 481 KEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (794)
Q Consensus 481 ~~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (794)
+|+++.++.. .+.|++.||+.|+.|.|||+++|..+++ .+.++|.++..... ..+....
T Consensus 454 ~DLw~~l~~~---~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~--------------~~~~~~~ 512 (882)
T KOG1046|consen 454 EDLWDALEEG---SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQERFLSDPD--------------PSEDNYL 512 (882)
T ss_pred hhHHHHHhcc---CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEehhhhccCCC--------------ccccCcc
Confidence 7777766622 2579999999999999999999998754 77777777643211 1123568
Q ss_pred CccceEEEEeccCCcccccccccCCCcceEEEeeecccchhhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCeeEEE
Q 003805 561 WPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIR 640 (794)
Q Consensus 561 ~~~pltiri~e~dg~~eh~~~~~~~~~~~~~~i~~~~k~~~~r~~k~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wIr 640 (794)
|++|+++....... +. -.| ++. ++ . . + ..+.+.+||+
T Consensus 513 w~iPl~~~~~~~~~-~~--------~~~--~~~--~~-----------~--~----------~-------~l~~~~~wi~ 549 (882)
T KOG1046|consen 513 WWIPLTYTTSGSGS-VP--------KFW--LSS--KS-----------T--T----------I-------KLPESDQWIK 549 (882)
T ss_pred cceeEEEEcCCCCc-cc--------eee--ecC--CC-----------c--c----------e-------ecCCCCeEEE
Confidence 99999997654311 10 011 100 00 0 0 0 0112338999
Q ss_pred ecCCCceeEEEeccCchHHH---HHHHcc-----cCChHHHHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHH
Q 003805 641 ADPEMEYLAEIHFNQPVQMW---INQLEK-----DGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAA 712 (794)
Q Consensus 641 ~D~~~~~~~~v~~~~~~~m~---~~qL~~-----d~dv~aq~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa 712 (794)
+|+++.++||| +|++.+| +.||.. ..|...-++.+.+|++.+..+...+..|+..+.+|. .|.++..|+
T Consensus 550 ~N~~~~g~yRV--~Yd~~~w~~l~~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~-~~~p~~~~~ 626 (882)
T KOG1046|consen 550 VNLEQTGYYRV--NYDDENWALLIEQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNET-DYVPWSAAI 626 (882)
T ss_pred EeCCcceEEEE--EeCHHHHHHHHHHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccc-ccchHHHHH
Confidence 99999999999 7777787 567754 222233457888899988888777888999999984 699999999
Q ss_pred HHHHhhcc
Q 003805 713 YALANTAS 720 (794)
Q Consensus 713 ~~L~~~~~ 720 (794)
.+|..+..
T Consensus 627 ~~l~~~~~ 634 (882)
T KOG1046|consen 627 RSLYKLHS 634 (882)
T ss_pred HHHHHHhh
Confidence 99998876
No 3
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=3.6e-76 Score=706.44 Aligned_cols=566 Identities=13% Similarity=0.126 Sum_probs=404.1
Q ss_pred CCeEEEEEEEEEEEeccCc--EEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCe-eeeeeeCCCCcccchhhhhccc
Q 003805 17 SGAVVRHQKLCLSIDMEKH--QIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE-PTEFEYYPHNHQNVENEKRWRS 92 (794)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~--~~~G~v~I~i~~-~~~~~I~L~~~~l~I~~V~v~g~-~~~f~~~~~~~~~~~~~~~~~~ 92 (794)
..+++.||+|.|+++.+.. .+.|+++|++.+ .+++.|.||+.+++|++|++||. ++.+.+.+
T Consensus 12 ~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~~~~~~~~~~-------------- 77 (831)
T TIGR02412 12 SLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGILDVAPVYDG-------------- 77 (831)
T ss_pred HhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCcccCccccCC--------------
Confidence 4688999999999986655 458888888876 56889999999999999999996 33332221
Q ss_pred cCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhhhhhhccccCCCCCccCCC-ceEEEEEEEEeccCcceE
Q 003805 93 MVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVGIH 171 (794)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~-~~~~~~~y~~~~~~~G~~ 171 (794)
..|.++. ++.| ..+++ +.|.|..... .|+++ | . .+.+|
T Consensus 78 ---------------------------~~i~l~~----l~~g--~~~l~--i~~~~~~~~~~~Gl~~--~-~-~~~~g-- 116 (831)
T TIGR02412 78 ---------------------------SRIPLPG----LLTG--ENTLR--VEATRAYTNTGEGLHR--F-V-DPVDG-- 116 (831)
T ss_pred ---------------------------CEEEccC----CCCC--ceEEE--EEEEEEecCCCceEEE--E-E-eCCCC--
Confidence 1222211 1111 11222 3333333322 36665 2 2 23455
Q ss_pred eeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeEEEE
Q 003805 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLA 251 (794)
Q Consensus 172 f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliafa 251 (794)
..+++|||||.+||+||||||+|+.||+|+|+|++|++|+|+|||++.+.. ..+++++++|..++|||+|++||+
T Consensus 117 --~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~---~~~~~~~~~F~~t~pmstYL~a~~ 191 (831)
T TIGR02412 117 --EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVT---PEPADRRWEFPETPKLSTYLTAVA 191 (831)
T ss_pred --eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCcccccc---ccCCCeEEEecCCCCcccceEEEE
Confidence 467899999999999999999999999999999999999999999987543 234678899999999999999999
Q ss_pred EeeceEeecCC-CCcEEEEEcCCchhH--HHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh
Q 003805 252 VAPFEVLPDHH-QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (794)
Q Consensus 252 vG~f~~~~~~~-~~~v~~~~~p~~~~~--~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~ 328 (794)
||+|+.++... +.++++||+|+..+. .+++++.+.++|+|||++||+||||+||++|++|++..++|||| |+++|
T Consensus 192 vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~--Glit~ 269 (831)
T TIGR02412 192 AGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENA--GCVTF 269 (831)
T ss_pred EeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccccc--ceeee
Confidence 99999987543 578999999997664 56899999999999999999999999999999998878899999 68999
Q ss_pred ccccccCcccchhhh-hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHhcchhh
Q 003805 329 SSQILYDEKVIDQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCK 407 (794)
Q Consensus 329 ~~~lL~~~~~~~~~~-~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 407 (794)
.+.+|+.+...+... ....+|+||||||||||+|||+||+|+|||||||+||+++++++..+.... +......
T Consensus 270 ~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~-~~~f~~~----- 343 (831)
T TIGR02412 270 AENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDA-WTTFAAQ----- 343 (831)
T ss_pred chhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchH-HHHHHHH-----
Confidence 766776654432222 233589999999999999999999999999999999999999988765432 1111100
Q ss_pred hccCCCcccCCCCccccC----C-CCcccccccceehhhHHHHHHHHHHhhChHHHHHHHHHHHHhhhcCCCCCCCCHHH
Q 003805 408 ADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKE 482 (794)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~----~-~~~~~~~f~~i~Y~Kg~~vl~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~ 482 (794)
....++..++.++.+++ . +.++...|+.++|.||++|||||+..||++.|+++|+.|+++|+++| ++++|
T Consensus 344 -~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~n----at~~D 418 (831)
T TIGR02412 344 -GKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGN----ATLDD 418 (831)
T ss_pred -HHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCC----CCHHH
Confidence 00001111111222222 1 22445679999999999999999999999999999999999999996 69999
Q ss_pred HHHHHHHhcCCCcccHHhHHhhhccCCCceEEEEEEEEecCCcEEE-EEEEeecCCCCCCCCccccCCCCCCCCCCCCCC
Q 003805 483 FRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVE-LAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (794)
Q Consensus 483 f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~-l~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (794)
|++.+++++ +.|+++||++|++++|+|+++|+..++. +.+. +.+.|. .....|
T Consensus 419 l~~~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~~~~~--~~~~~~~~~~~---------------------~~~~~~ 472 (831)
T TIGR02412 419 LIDSLAKAS---GRDLSAWSDAWLETAGVNTLTPEITTDG--GVVSALYPESS---------------------GPPRPH 472 (831)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHcCCCCceEEEEEEECC--CeEEEEEEecC---------------------CCCCCe
Confidence 999999887 4689999999999999999999887754 3333 222110 001347
Q ss_pred ccceEEEEeccCCcccccccccCCCcceEEEeeecccchhhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCeeEEEe
Q 003805 562 PGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRA 641 (794)
Q Consensus 562 ~~pltiri~e~dg~~eh~~~~~~~~~~~~~~i~~~~k~~~~r~~k~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wIr~ 641 (794)
++|+++... .++... ...+ ..+.+.+.. . .... + ....+..||.+
T Consensus 473 ~ip~~~~~~-~~~~~~-------~~~~--~~~~~~~~~----~----~~~~----------~-------~~~~~~~~v~~ 517 (831)
T TIGR02412 473 RIAIGLYDL-DRDDLR-------RTTL--VPLTISGER----T----AVPQ----------L-------VGKRAPALVLL 517 (831)
T ss_pred eEEEeeeec-CCCcce-------eeeE--EEEEEecCc----e----eehh----------h-------cCCCCCCEEEE
Confidence 778776321 111110 0111 122222110 0 0000 0 00123479999
Q ss_pred cCCCceeEEEeccCchHHH---HHHHcccCChHH---HHHHHHHHHcCCCCchhHHhH-HHHhhccCcchhHHHHHHHHH
Q 003805 642 DPEMEYLAEIHFNQPVQMW---INQLEKDGDVVA---QAQAIAALEALPHLSFNVVNT-LNNFLSDSKAFWRVRIEAAYA 714 (794)
Q Consensus 642 D~~~~~~~~v~~~~~~~m~---~~qL~~d~dv~a---q~~a~~~l~~~~~~~~~~~~~-L~~~l~~~~~f~~VR~~Aa~~ 714 (794)
|.+..++||| ++++.+| ..+|....+.+. -++++.+|++.+..+...... +.+.|.+|. -|-|+..+...
T Consensus 518 N~~~~gyyrv--~yd~~~~~~l~~~l~~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~-~~~v~~~~~~~ 594 (831)
T TIGR02412 518 NDDDLTYAKV--RLDPTSFDTVLAALSKLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSET-DYAVVQQVLSQ 594 (831)
T ss_pred eCCCcEEEEE--ECCHHHHHHHHHHhhhCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCC-chHHHHHHHHH
Confidence 9999999999 6666666 456654444544 447888888877666554333 557888875 58888888887
Q ss_pred HH-hhc
Q 003805 715 LA-NTA 719 (794)
Q Consensus 715 L~-~~~ 719 (794)
|. .+.
T Consensus 595 l~~~~~ 600 (831)
T TIGR02412 595 LLRAVA 600 (831)
T ss_pred HHHHHH
Confidence 77 443
No 4
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=4e-75 Score=689.30 Aligned_cols=564 Identities=16% Similarity=0.207 Sum_probs=420.3
Q ss_pred CCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc--CCcceEEEeccCceeeEEEEcCeee---eeeeCCCCcccchhhh
Q 003805 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPT---EFEYYPHNHQNVENEK 88 (794)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~--~~~~~I~L~~~~l~I~~V~v~g~~~---~f~~~~~~~~~~~~~~ 88 (794)
...+++.+.||+|+|++|++...++|.++|+... .+++.|.||+++|+|.+|.+||+++ .|.+.+.
T Consensus 14 y~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~~--------- 84 (875)
T PRK14015 14 YRPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDEE--------- 84 (875)
T ss_pred cCCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcCC---------
Confidence 4557899999999999999999999999998765 4578999999999999999999876 4554321
Q ss_pred hccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhhhhhhccccCCCCCccCCCceEEEEEEEEeccCc
Q 003805 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEV 168 (794)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~~~~~ 168 (794)
.|+|... +. .++++ +.|++.+..+. +-.
T Consensus 85 ------------------------------~L~I~~l------~~---~~~l~--I~y~~~P~~n~-----------~l~ 112 (875)
T PRK14015 85 ------------------------------GLTIENL------PD---RFTLE--IETEIDPEANT-----------ALE 112 (875)
T ss_pred ------------------------------EEEEecC------Cc---cEEEE--EEEEEecCCCC-----------Cce
Confidence 3666411 10 12222 34444332211 012
Q ss_pred ceEeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeC-Ce-EEEEcCceeeeeeccCCCCceEEEEecCCCCcce
Q 003805 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQ-NL-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAK 246 (794)
Q Consensus 169 G~~f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~-~~-~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y 246 (794)
|+++...+++|||||.+||+||||+|+|+.||||+++|++|+ .| +++|||+++++.. ..+++++++|+.++|||+|
T Consensus 113 Gly~s~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~--~~~g~~~~~w~~~~PmpsY 190 (875)
T PRK14015 113 GLYRSGGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGE--LPDGRHWATWEDPFPKPSY 190 (875)
T ss_pred eeEEECCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCcccccee--ccCCeEEEEEEeCCCcccc
Confidence 333333468999999999999999999999999999999999 48 6899999987643 2467899999999999999
Q ss_pred eEEEEEeeceEeecC----C--CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccc
Q 003805 247 WITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSST 320 (794)
Q Consensus 247 liafavG~f~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~ 320 (794)
+++|+||+|+++++. . +.++++|++|+..+.+.++++.++++|+|||++||.||||++|++|++|++..++|||
T Consensus 191 L~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN 270 (875)
T PRK14015 191 LFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMEN 270 (875)
T ss_pred eEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCccccc
Confidence 999999999998753 1 3678999999999999999999999999999999999999999999999887889999
Q ss_pred cccchhhhc-cccccCcccc-hhhh-hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHH
Q 003805 321 FGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYR 397 (794)
Q Consensus 321 ~gagl~~~~-~~lL~~~~~~-~~~~-~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~ 397 (794)
+ ||++|. ..+|.+++.. +..+ ....+|+||+|||||||+|||+||+|+|||||||+|++.++.....+....++.
T Consensus 271 ~--Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~ 348 (875)
T PRK14015 271 K--GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIE 348 (875)
T ss_pred c--cccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9 688894 5577776542 2222 234589999999999999999999999999999999998887766543222221
Q ss_pred HHHHhcchhhhccCCCcccCCCCccccCCC---CcccccccceehhhHHHHHHHHHHhhChHHHHHHHHHHHHhhhcCCC
Q 003805 398 RYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASP 474 (794)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~vl~mLe~~lG~e~F~~~L~~yl~~~~~~~~ 474 (794)
....... ..+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 349 ~~~~l~~-------~~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~- 420 (875)
T PRK14015 349 DVRVLRA-------AQFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQA- 420 (875)
T ss_pred HHHHHhh-------hcccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC-
Confidence 1111100 0111122222233322 2345688999999999999999999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHhcCCCcccHHhHHhhhccCCCceEEEEEEEEecCCcEEEEEEEeecCCCCCCCCccccCCCCCCC
Q 003805 475 VRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSEN 554 (794)
Q Consensus 475 ~~~~st~~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~i~q~~~~~~~~~~~~~~~~~~~~~ 554 (794)
++++||++.+++++ +.|+.+|+ +|++++|+|.++|+.+|+..++.++++++|.+...+.
T Consensus 421 ---at~~Df~~ale~as---g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~-------------- 479 (875)
T PRK14015 421 ---VTCEDFVAAMEDAS---GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPG-------------- 479 (875)
T ss_pred ---CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCC--------------
Confidence 79999999999887 46899986 8999999999999999987778889999997532110
Q ss_pred CCCCCCCccceEEEEeccCCcccccccccCCCc-ceEEEeeecccchhhhhcCCCCCCCCCCCCCCCCcccccccccCCC
Q 003805 555 RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSME 633 (794)
Q Consensus 555 ~~~~~~~~~pltiri~e~dg~~eh~~~~~~~~~-~~~~~i~~~~k~~~~r~~k~~~~~~~~~~~~~~d~~~~~d~~~~~~ 633 (794)
......|++|++|.+.+.+|.-.. +...++. -..+++.... + . +.-.+ -.+
T Consensus 480 ~~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~l~l~~~~-------q---------------~-f~f~~---~~~ 531 (875)
T PRK14015 480 QPEKQPLHIPVAIGLLDPDGKELP--LQLEGEPVERVLELTEAE-------Q---------------T-FTFEN---VAE 531 (875)
T ss_pred CCCCceEEEEEEEEEEcCCCceee--ccccCCccceEEEEcCCe-------e---------------E-EEEcC---CCC
Confidence 112347999999998877775210 0001110 0012221000 0 0 00000 012
Q ss_pred CCeeEEEecCCCceeEEEeccCchHHHHHHHcccCChHHHHHHHHHHHcCC------------CCchhHHhHHHHhhccC
Q 003805 634 SPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALP------------HLSFNVVNTLNNFLSDS 701 (794)
Q Consensus 634 ~~~~wIr~D~~~~~~~~v~~~~~~~m~~~qL~~d~dv~aq~~a~~~l~~~~------------~~~~~~~~~L~~~l~~~ 701 (794)
.|+ +.+|.++.-..++.+++++..+..|+++|.|..++.||++.|++.. ..+...+.++...|.|+
T Consensus 532 ~p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 609 (875)
T PRK14015 532 RPV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDE 609 (875)
T ss_pred Cce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCC
Confidence 445 7999999999999999999999999999999999999998887430 11334556666666654
No 5
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=3.8e-73 Score=670.32 Aligned_cols=543 Identities=16% Similarity=0.191 Sum_probs=408.2
Q ss_pred CCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeee---eeeCCCCcccchhhhhcc
Q 003805 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE---FEYYPHNHQNVENEKRWR 91 (794)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~~~~l~I~~V~v~g~~~~---f~~~~~~~~~~~~~~~~~ 91 (794)
.++|.+.||+|+|+++++...++|.++|++.+ .+.+.|.||+++|+|.+|.+||..+. |.+.+
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~------------- 70 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDD------------- 70 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcC-------------
Confidence 47899999999999999999999999999875 34678999999999999999997543 33221
Q ss_pred ccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhhhhhhccccCCCCCccCCCceEEEEEEEEeccCcceE
Q 003805 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIH 171 (794)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~~~~~G~~ 171 (794)
..|+|... + +.++++ +.|.+.+.. +.+..|++
T Consensus 71 --------------------------~~L~I~~~------~---~~~~l~--i~~~~~p~~-----------n~~l~GlY 102 (863)
T TIGR02414 71 --------------------------ETLTIASV------P---ESFTLE--IETEIHPEE-----------NTSLEGLY 102 (863)
T ss_pred --------------------------CEEEEeeC------C---ccEEEE--EEEEeeccc-----------CCCCeEEE
Confidence 12555321 0 112222 222222211 11123444
Q ss_pred eeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCceeeeeeccCCCCceEEEEecCCCCcceeEE
Q 003805 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (794)
Q Consensus 172 f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~-~-~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~ylia 249 (794)
+.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++.... .++++++++|+.++|||+|++|
T Consensus 103 ~s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~--~~~g~~~~~f~~t~pmptYLfA 180 (863)
T TIGR02414 103 KSGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGE--LPDGRHWAEWEDPFPKPSYLFA 180 (863)
T ss_pred EeCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCcccccee--cCCCeEEEEEeCCCCcChhHhe
Confidence 4455689999999999999999999999999999999996 6 6789999876543 2467889999999999999999
Q ss_pred EEEeeceEeecC------CCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCccccccccc
Q 003805 250 LAVAPFEVLPDH------HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (794)
Q Consensus 250 favG~f~~~~~~------~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (794)
|+||+|+++++. .+.++++|+.|+..+.+.++++.++++|+|||++||.||||+||++|+||++..++||||
T Consensus 181 ~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~-- 258 (863)
T TIGR02414 181 LVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENK-- 258 (863)
T ss_pred EEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCcccccc--
Confidence 999999998753 135789999999999999999999999999999999999999999999998888999999
Q ss_pred chhhh-ccccccCcccc-hhhhh-HHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Q 003805 324 AMGIF-SSQILYDEKVI-DQAID-TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (794)
Q Consensus 324 gl~~~-~~~lL~~~~~~-~~~~~-~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~~~~ 400 (794)
||++| +..+|.++... +..+. ...+|+||+|||||||+|||+||+++|||||||+|++.++.....|....++....
T Consensus 259 GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~ 338 (863)
T TIGR02414 259 GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVR 338 (863)
T ss_pred ceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 68899 55677777542 32222 34589999999999999999999999999999999998887776554332222111
Q ss_pred HhcchhhhccCCCcccCCCCccccCCC---CcccccccceehhhHHHHHHHHHHhhChHHHHHHHHHHHHhhhcCCCCCC
Q 003805 401 ANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (794)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~vl~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~ 477 (794)
..... .+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 339 ~lr~~-------~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~---- 407 (863)
T TIGR02414 339 LLRAH-------QFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQA---- 407 (863)
T ss_pred HHHhh-------hhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC----
Confidence 11100 111122222333322 2445678999999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhcCCCcccHHhHHhhhccCCCceEEEEEEEEecCCcEEEEEEEeecCCCCCCCCccccCCCCCCCCCC
Q 003805 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (794)
Q Consensus 478 ~st~~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~i~q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (794)
++++||++.++++++ .|+.+|+ +|++|+|+|+|+|+.+|+.++..++|+++|.....+ ....
T Consensus 408 at~~Df~~ale~asg---~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~--------------~~~~ 469 (863)
T TIGR02414 408 VTCEDFVAAMEDASG---RDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTP--------------GQTE 469 (863)
T ss_pred CCHHHHHHHHHHHhC---CCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCC--------------CCCc
Confidence 799999999998874 6899985 899999999999999998777778899888653211 0112
Q ss_pred CCCCccceEEEEeccCCcccccccccCCCc--ceEEEeeecccchhhhhcCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 003805 558 DIGWPGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESP 635 (794)
Q Consensus 558 ~~~~~~pltiri~e~dg~~eh~~~~~~~~~--~~~~~i~~~~k~~~~r~~k~~~~~~~~~~~~~~d~~~~~d~~~~~~~~ 635 (794)
...|.+|+.|.+...+|.-.- ....++. -..+++.... .. +.-.+ -.+.|
T Consensus 470 ~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~~l~l~~~~----------------------~~-f~f~~---~~~~p 521 (863)
T TIGR02414 470 KKPLHIPIAVGLLGPNGRKLM--LSLDGERDTTRVLELTEAE----------------------QT-FVFEG---IAEKP 521 (863)
T ss_pred CCceEEEEEEEEEeCCCCEee--ecccCCCCcceEEEEccCE----------------------EE-EEEcC---CCCCC
Confidence 347999999999988885110 0001110 0112221000 00 00000 01234
Q ss_pred eeEEEecCCCceeEEEeccCchHHHHHHHcccCChHHHHHHHHHHHc
Q 003805 636 LSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (794)
Q Consensus 636 ~~wIr~D~~~~~~~~v~~~~~~~m~~~qL~~d~dv~aq~~a~~~l~~ 682 (794)
+ +.++.+|.-..++.+++++..+..+|.+|.|..++.+|++.|++
T Consensus 522 ~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 566 (863)
T TIGR02414 522 V--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWEAGQRLAR 566 (863)
T ss_pred e--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 4 89999999999999999999999999999999999999998873
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.3e-67 Score=606.24 Aligned_cols=434 Identities=19% Similarity=0.270 Sum_probs=329.2
Q ss_pred CCC-CCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhc
Q 003805 14 VEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRW 90 (794)
Q Consensus 14 ~~~-~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~~~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~ 90 (794)
.+| ..++|.||+|+|++|++++.|+|.|+|++.+ . .++.|.||+++|+|++|.++|.++.|+......
T Consensus 5 ~sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~~--------- 75 (601)
T TIGR02411 5 LSNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPADFAIGERKE--------- 75 (601)
T ss_pred ccCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccceEeccccC---------
Confidence 455 6799999999999999999999999999986 3 467899999999999999999887776542100
Q ss_pred cccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhhhhhhccccCCCCCccCCCceEEEEEEEEe--ccCc
Q 003805 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE--KVEV 168 (794)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~--~~~~ 168 (794)
.....|.|.++.+ +..+. .++ +.+.|+|.++. .|+ +|+. ...+
T Consensus 76 ------------------------~~g~~L~I~l~~~---l~~g~-~~~--l~I~Y~~~~~~-~gl----~~~~~~~t~g 120 (601)
T TIGR02411 76 ------------------------PLGSPLTISLPIA---TSKNK-ELV--LNISFSTTPKC-TAL----QWLTPEQTSG 120 (601)
T ss_pred ------------------------CCCCeEEEEeCCc---cCCCc-eEE--EEEEEeecCCC-cee----EEecccccCC
Confidence 0112588876532 22221 123 34677776543 233 2221 1112
Q ss_pred ceEeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeE
Q 003805 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248 (794)
Q Consensus 169 G~~f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~yli 248 (794)
| +.++++|||||.+||+||||+|+|+.||||+++|++| ++|++||.++.+. .++..+++|..++|||+|++
T Consensus 121 ~---~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~----~~~~~~~~F~~t~pmptYLi 191 (601)
T TIGR02411 121 K---KHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET----SNDPGKYLFKQKVPIPAYLI 191 (601)
T ss_pred C---CCCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc----cCCCceEEEEeCCCcchhhh
Confidence 2 2478999999999999999999999999999999999 9999888776543 23456889999999999999
Q ss_pred EEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHcCCCCCCCCccEEEEC-CCCcccccccccchh
Q 003805 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMG 326 (794)
Q Consensus 249 afavG~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~V~vp-~~~~~~~~~~gagl~ 326 (794)
||+||+|+..+. +..+++|+.|+..+.+++.+. .+.++|+++|+++| ||||+|||+|++| ++..++|||+ |++
T Consensus 192 a~avG~~~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~--~lt 266 (601)
T TIGR02411 192 ALASGDLASAPI--GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENP--NLT 266 (601)
T ss_pred eeeeccceeccc--CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCcccccccccc--cce
Confidence 999999997653 567899999999888888888 89999999998865 9999999999884 5667899999 455
Q ss_pred hhccccccCcccchhhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHHH---HHHhc
Q 003805 327 IFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR---YKANC 403 (794)
Q Consensus 327 ~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~~---~~~~~ 403 (794)
..+..+|.... ....+||||||||||||+||++||+|+|||||||+|++.+++++++|++...+.. +....
T Consensus 267 f~~~~ll~~d~------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~ 340 (601)
T TIGR02411 267 FATPTLIAGDR------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQ 340 (601)
T ss_pred eeccccccCCh------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHH
Confidence 44666765432 1235899999999999999999999999999999999999999999987643332 11111
Q ss_pred chhhhccCCCcccCCCCccccCCCCcccccccceehhhHHHHHHHHHHhhC-hHHHHHHHHHHHHhhhcCCCCCCCCHHH
Q 003805 404 AVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKE 482 (794)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~~st~~ 482 (794)
..+.. .....++... ..++...++...|+.+.|.||+++|||||..|| ++.|+++|+.|++++++++ +++++
T Consensus 341 ~~~~~-~~~~~~~~~~--~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s----~~t~d 413 (601)
T TIGR02411 341 ESVKT-LGEDPEYTKL--VVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKS----LDTYQ 413 (601)
T ss_pred HHHHh-hcCCCCCCcc--cccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCC----CCHHH
Confidence 11100 0000111110 011222245678999999999999999999999 9999999999999999996 79999
Q ss_pred HHHHHHHhcCC--CcccHHhH-HhhhccCCCceEEEEEE
Q 003805 483 FRHFANKVGNL--ERPFLKEF-FPRWVGTCGCPVLRMGF 518 (794)
Q Consensus 483 f~~~~e~~~~~--~~~dl~~f-~~~Wv~~~G~P~l~v~~ 518 (794)
|++.+.+.... .+.+++.+ |++|++++|+|.+.+.+
T Consensus 414 f~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~ 452 (601)
T TIGR02411 414 FKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNF 452 (601)
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCC
Confidence 99877654211 12457766 99999999999987754
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-66 Score=617.80 Aligned_cols=463 Identities=22% Similarity=0.311 Sum_probs=355.2
Q ss_pred EEEEEE--EeccCcEEEEEEEEEEEc--C-CcceEEEeccCceeeEEEEcCeeeee--eeCCCCcccchhhhhccccCCC
Q 003805 24 QKLCLS--IDMEKHQIYGYTELEIAV--P-DIGIVGLHAENLGIESVLVDGEPTEF--EYYPHNHQNVENEKRWRSMVSS 96 (794)
Q Consensus 24 y~l~L~--id~~~~~~~G~v~I~i~~--~-~~~~I~L~~~~l~I~~V~v~g~~~~f--~~~~~~~~~~~~~~~~~~~~~~ 96 (794)
|++.|+ +++++..|+|.++|++.. . ....|.||+++|+|.+|.|||.+... .+...
T Consensus 25 ~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~~~~~~~~----------------- 87 (859)
T COG0308 25 YDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTAWYRLDGD----------------- 87 (859)
T ss_pred cceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccccccccCc-----------------
Confidence 555555 445558999999999975 3 33349999999999999999986442 22211
Q ss_pred CCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhhhhhhccccCCCCCccC-CC-ceEEEEEEEEeccCcceEeee
Q 003805 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK-QN-VKLVRIDYWVEKVEVGIHFDG 174 (794)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~-~~-~~~~~~~y~~~~~~~G~~f~~ 174 (794)
.+.|....+ ....+....++.+.+.+.+... .. .|+++..+ .+ .
T Consensus 88 ----------------------~~~i~~~~~--~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~------~~----~ 133 (859)
T COG0308 88 ----------------------ALTITVAPP--IPERSERPFTLAITYEFTGPVSNDTLEGLYRSGY------GG----K 133 (859)
T ss_pred ----------------------cceeeeccc--cccccCCCccEEEEEEecccccCccccceeecCC------CC----C
Confidence 112211000 0000000112222233333322 11 24333211 11 4
Q ss_pred ceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeEEEEEee
Q 003805 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (794)
Q Consensus 175 ~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliafavG~ 254 (794)
.+++||||+.+||+||||+|+|+.||+|+++|++++++++||||+++.... ..+++++++|..++|||+|++|+++|+
T Consensus 134 ~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~--~~~g~~~~~f~~~~~mptYL~al~~G~ 211 (859)
T COG0308 134 PYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGT--LVDGRKIVKFEDTPPMPTYLFALVAGD 211 (859)
T ss_pred eeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCcccccc--ccCCcEEEEEcCCCCcchHhhheeeec
Confidence 679999999999999999999999999999999999999999999987654 234689999999999999999999999
Q ss_pred ceEeecCC-----CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh-
Q 003805 255 FEVLPDHH-----QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF- 328 (794)
Q Consensus 255 f~~~~~~~-----~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~- 328 (794)
|+++++.. ..++.+|+.|+....++++++.+.++++|||++||.+||+++ ++|+||++..++|||| |++++
T Consensus 212 ~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~--Gl~tf~ 288 (859)
T COG0308 212 LEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENW--GLVTFR 288 (859)
T ss_pred ceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcccccc--ceeEEe
Confidence 99887765 578999999999999999999999999999999999999999 9999999999999999 67888
Q ss_pred ccccccCcc-cchhhhhH-HHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHhcchh
Q 003805 329 SSQILYDEK-VIDQAIDT-SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (794)
Q Consensus 329 ~~~lL~~~~-~~~~~~~~-~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~~~~~~~~~~ 406 (794)
...+|.+++ ..+..+.. ..+|+||||||||||+||++||+|+|||||||+|++..+.+.+.|....++..+....
T Consensus 289 ~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~--- 365 (859)
T COG0308 289 EKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLR--- 365 (859)
T ss_pred eeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHh---
Confidence 455787754 34444432 3499999999999999999999999999999999999999999883322222222211
Q ss_pred hhccCCCcccCCCCccccC-----CCCcccccccceehhhHHHHHHHHHHhhChHHHHHHHHHHHHhhhcCCCCCCCCHH
Q 003805 407 KADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (794)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~-----~~~~~~~~f~~i~Y~Kg~~vl~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~ 481 (794)
...++..++.+..+++ .+.++..+||.++|.||++|+|||+..+|++.|+++|+.|+++|.+++ ++++
T Consensus 366 ---~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~----~~~~ 438 (859)
T COG0308 366 ---TSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN----ATTM 438 (859)
T ss_pred ---hhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC----CCHH
Confidence 1112223333333333 246778899999999999999999999999999999999999999996 6899
Q ss_pred HHHHHHHHhcCCCcccHHhHHhhhccCCCceEEEEEEEEecCCcEEEEEEEeecCCCCCCCCccccCCCCCCCCCCCCCC
Q 003805 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (794)
Q Consensus 482 ~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (794)
||++.++.++ |+|+.++|++|+.++|+|++.|+..++. .+.|+|+|+.... ......|
T Consensus 439 Dl~~a~~~~s---g~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----------------~~~~~~~ 496 (859)
T COG0308 439 DLWKALEDAS---GKDLSAFFESWLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----------------QEEKRPW 496 (859)
T ss_pred HHHHHHHHHh---CCcHHHHHHHHHhCCCCCceeeeeeccc---cEEEEEEEeccCC----------------CccCcee
Confidence 9999999987 4799999999999999999999998764 6678998875421 1224579
Q ss_pred ccceEEEEeccCC
Q 003805 562 PGMMSIRVHELDG 574 (794)
Q Consensus 562 ~~pltiri~e~dg 574 (794)
++|+.+...+.+|
T Consensus 497 ~iPl~~~~~~~~~ 509 (859)
T COG0308 497 PIPLAIKLLDGGG 509 (859)
T ss_pred eeccEEEecCCCC
Confidence 9999999887765
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=1.9e-59 Score=524.08 Aligned_cols=372 Identities=23% Similarity=0.347 Sum_probs=281.6
Q ss_pred CCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeee-------eeeCCCCcccchh
Q 003805 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE-------FEYYPHNHQNVEN 86 (794)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~~~~l~I~~V~v~g~~~~-------f~~~~~~~~~~~~ 86 (794)
....+.|.||+|.|++|++...|+|.|+|++.+ .+++.|.||+++|.|.+|.+++.... +.++.
T Consensus 2 Lp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~-------- 73 (390)
T PF01433_consen 2 LPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDD-------- 73 (390)
T ss_dssp --TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEEC--------
T ss_pred CCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeecc--------
Confidence 356899999999999999999999999999997 57899999999999999999987654 22221
Q ss_pred hhhccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhhhhhhccccCCCCCccCC-CceEEEEEEEEec
Q 003805 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEK 165 (794)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~-~~~~~~~~y~~~~ 165 (794)
....|.|.++.+ +..+. .++++ +.|+|.++. ..|++++.|...
T Consensus 74 -----------------------------~~~~l~I~l~~~---l~~g~-~~~L~--I~y~g~~~~~~~G~~~~~y~~~- 117 (390)
T PF01433_consen 74 -----------------------------ENEKLTITLPKP---LPPGS-NYTLR--IEYSGKISDDSSGLYRSSYTDQ- 117 (390)
T ss_dssp -----------------------------CBTEEEEEEEEE---CSTTE-EEEEE--EEEEEECBSSSSEEEEEEEE-G-
T ss_pred -----------------------------ccceeehhhhhh---cccCc-EEEEE--EEEeecccccccccccceeecc-
Confidence 112367766432 22221 13444 688888776 458999888751
Q ss_pred cCcceEeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcc
Q 003805 166 VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (794)
Q Consensus 166 ~~~G~~f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~ 245 (794)
. .|. ..++++|++||.+||+||||+|+|++||+|+++|++|++++|+|||++++.... ++++++++|..++|||+
T Consensus 118 ~-~~~--~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~--~~~~~~~~f~~t~p~~~ 192 (390)
T PF01433_consen 118 T-NGN--TRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESN--DDGWKTTTFETTPPMPT 192 (390)
T ss_dssp T-SSS--ETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEE--TTTEEEEEEEEEEEEEG
T ss_pred c-ccc--cCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccc--cccceeEeeecccccCc
Confidence 1 121 367899999999999999999999999999999999999999999999987754 35799999999999999
Q ss_pred eeEEEEEeeceEeecCCC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCccccccccc
Q 003805 246 KWITLAVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (794)
Q Consensus 246 yliafavG~f~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (794)
|++||+||+|+.++.... .++++|++|+..+.++++++.+.+++++|+++||++|||+|+++|++|++..++|+++
T Consensus 193 yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~-- 270 (390)
T PF01433_consen 193 YLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW-- 270 (390)
T ss_dssp GG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T--
T ss_pred hhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEecccccccccc--
Confidence 999999999999876553 5899999999999999999999999999999999999999999999998777899999
Q ss_pred chhhh-ccccccCcccchhh--hhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHHHH-
Q 003805 324 AMGIF-SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY- 399 (794)
Q Consensus 324 gl~~~-~~~lL~~~~~~~~~--~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~~~- 399 (794)
|++++ +..++++++..+.. .....+||||+|||||||+||++||+|+||+||||+|++.+++++.+|...+.....
T Consensus 271 g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~ 350 (390)
T PF01433_consen 271 GLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLV 350 (390)
T ss_dssp TEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHH
T ss_pred ccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhh
Confidence 57777 56688887654332 234568999999999999999999999999999999999999999999654321111
Q ss_pred HHhcchhhhccC-CCcccCCCCccccC-CCCcccccccceehhhH
Q 003805 400 KANCAVCKADDS-GATALSSSASCKDL-YGTQCIGIFGKIRSCKS 442 (794)
Q Consensus 400 ~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~~~~~~~f~~i~Y~Kg 442 (794)
......+..|.. ...++. .++ .+.++...|+.+.|.||
T Consensus 351 ~~~~~~~~~d~~~~~~pl~-----~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 351 QEMQRALREDALPNSHPLS-----SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHHHHHHHTSTTCCCSS-----SSSSSESCGGGGSSHHHHHHH
T ss_pred hhHHHHHHHhhcCCCcceE-----eCCCCCCChHHhcCccccCCC
Confidence 111111222221 111221 122 23456678999999998
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=6e-52 Score=441.63 Aligned_cols=441 Identities=19% Similarity=0.253 Sum_probs=326.4
Q ss_pred CCCCCCCCCcCCC-CCC-CCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeeeeeeC
Q 003805 1 MAKPRKPKNEETK-VEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77 (794)
Q Consensus 1 ~~~~~~~~~~~~~-~~~-~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~~~~l~I~~V~v~g~~~~f~~~ 77 (794)
||.+| +|. .+| ..+.+.|+.|.+.+||+...++|.|.+++.+ .+...|.||.+++.|.+|++||.+.+|...
T Consensus 1 m~~~~-----Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRR-----DPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIG 75 (613)
T ss_pred CCCCC-----CcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccC
Confidence 66666 554 334 6788999999999999999999999999986 333459999999999999999988776643
Q ss_pred CCCcccchhhhhccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhhhhhhccccCCCCCccCCCceEE
Q 003805 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLV 157 (794)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~ 157 (794)
.. +.. .+..-.+++.. ...+++ ....+
T Consensus 76 ~~-~~~------------------------------~g~~~~~~l~~----~~~~a~------------------~~~~l 102 (613)
T KOG1047|consen 76 FR-QPF------------------------------LGSGQKLVLPA----PSSKAG------------------ERLQL 102 (613)
T ss_pred cc-cCC------------------------------CCCceEEEecc----cccccc------------------CceEE
Confidence 21 000 00000133311 111111 11123
Q ss_pred EEEEEEeccCcceEe---------eeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccC
Q 003805 158 RIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKD 228 (794)
Q Consensus 158 ~~~y~~~~~~~G~~f---------~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~ 228 (794)
.|.|......+|+++ +.+|++||||...||..|||+|.|+.|.||+..|.+|.++++++++...++.. .
T Consensus 103 ~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~~--~ 180 (613)
T KOG1047|consen 103 LIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEKP--G 180 (613)
T ss_pred EEEEeccCCcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccCC--C
Confidence 344432222233333 24799999999999999999999999999999999999999999997755432 3
Q ss_pred CCCceEEEEecCCCCcceeEEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHcCCCCCCCCccE
Q 003805 229 DPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQ 307 (794)
Q Consensus 229 ~~~~~~~~f~~t~p~s~yliafavG~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~ 307 (794)
..++.+++|.+..|+++|++||++|+.+..+. +..-++|+.|...+..+..+. .+.++|+--|+.+| ||+|..||+
T Consensus 181 ~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI--gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDl 257 (613)
T KOG1047|consen 181 SNGRAIFRFKQEVPIPSYLIAIAVGDLESREI--GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDL 257 (613)
T ss_pred CCCcceEEEEeccCchhhhHHHhhcccccccc--CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceE
Confidence 45688999999999999999999999876554 556789999999999888887 89999999999999 999999999
Q ss_pred EEECC-CCcccccccccchhhhccccccCcccchhhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHH
Q 003805 308 VFLAP-EMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIK 386 (794)
Q Consensus 308 V~vp~-~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~ 386 (794)
+++|+ |..++|||. .|+.....||-..+. ...+|||||||-||||+||..+|.+.||||||++|++..++.
T Consensus 258 lvlPpSFP~gGMENP--cltF~TpTllaGDrs------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g 329 (613)
T KOG1047|consen 258 LVLPPSFPFGGMENP--CLTFVTPTLLAGDRS------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVG 329 (613)
T ss_pred EEecCCCCcccccCc--ceeeecchhhcCCcc------hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhh
Confidence 99975 556789988 344446777766543 245899999999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHhcchhh-hccCCCcccCCCCccccCCCCcccccccceehhhHHHHHHHHHHhhC-hHHHHHHHHH
Q 003805 387 KFLGNNEARYRRYKANCAVCK-ADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQN 464 (794)
Q Consensus 387 ~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mLe~~lG-~e~F~~~L~~ 464 (794)
.++|.....+.....+...-. .+.-+. .........++.+.++...|+.+-|.||..+|+.||+.+| ++.|...||+
T Consensus 330 ~~~g~~~~~f~a~~gw~~L~~~~d~~g~-~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~ 408 (613)
T KOG1047|consen 330 RLYGEAYRQFEALIGWRELRPSMDLFGE-TSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRA 408 (613)
T ss_pred hhcchhHHHHHHhcChhhhhhHHHhcCC-CcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHH
Confidence 999988654443222211100 011111 0000111123333456678999999999999999999999 5789999999
Q ss_pred HHHhhhcCCCCCCCCHHHHHHHHHH-hcCCCccc-HHh-HHhhhccCCCceEEEEE
Q 003805 465 IISRAQGASPVRTLSTKEFRHFANK-VGNLERPF-LKE-FFPRWVGTCGCPVLRMG 517 (794)
Q Consensus 465 yl~~~~~~~~~~~~st~~f~~~~e~-~~~~~~~d-l~~-f~~~Wv~~~G~P~l~v~ 517 (794)
|+++++++ ++.+++|...+-+ ..+..+++ ++. -|+.|++++|.|...-.
T Consensus 409 Yv~kfa~k----sI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 409 YVHKFAFK----SILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHHhccc----eecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 99999998 4899999876543 33321222 333 49999999999976543
No 10
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.92 E-value=9.4e-10 Score=102.11 Aligned_cols=102 Identities=21% Similarity=0.339 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHhcchhhhccCCCcccCCCCccccC
Q 003805 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDL 425 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (794)
..+++||++|+|++..+........|++||+|+|++...-. .. ..... ..+... ...++. ++
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~~------~~-~~~~~---~~~~~~--~~~~~~------~l 87 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIED------EF-DEDLK---QAIESG--SLPPLE------PL 87 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCccc------hh-HHHHH---HHHHcC--CCCChH------HH
Confidence 46899999999999999877788899999999999833110 00 11110 010111 111111 11
Q ss_pred CC-CcccccccceehhhHHHHHHHHHHhhChHHHHHHHHHH
Q 003805 426 YG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI 465 (794)
Q Consensus 426 ~~-~~~~~~f~~i~Y~Kg~~vl~mLe~~lG~e~F~~~L~~y 465 (794)
.. ......+....|.+|.+++++|+...|++.|.+.|+.|
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 88 NSSFDFSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10 00022345568999999999999999999999999875
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.59 E-value=1.9e-06 Score=94.19 Aligned_cols=225 Identities=14% Similarity=0.137 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccCcccc-hhh-hhH-HHHHHHH
Q 003805 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVI-DQA-IDT-SIKLSFA 352 (794)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~-~~~-~~~-~~~iaHE 352 (794)
..+...+.++++++-=-+.|| +-||.+|..++--. -..++||.-. ++.+.++.-.. ++. +.. ..+++||
T Consensus 182 d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s------~q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHE 254 (558)
T COG3975 182 DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLS------DQIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHE 254 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEec------CCCCCCceeccccccccccccccchhHHHHHHHHHHHH
Confidence 444555666677766667788 67999988765321 1222266666 45566555322 222 232 5589999
Q ss_pred HHHHhhccccCCCCC-----------CchHHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHhcchhhhccCCCcccCCC
Q 003805 353 LARQWFGVYITPELP-----------NDEWLLDGLAGFLTDSFIKKFL--GNNEARYRRYKANCAVCKADDSGATALSSS 419 (794)
Q Consensus 353 lAHQWfG~~Vt~~~w-----------~d~WL~EG~A~y~~~~~~~~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (794)
..|-|=+-.+-|..- .-+|+.|||+.|...++.-+-- ..+.+.--.-+....+.........++..
T Consensus 255 yfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laE- 333 (558)
T COG3975 255 YFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAE- 333 (558)
T ss_pred HHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccc-
Confidence 999998876666532 4589999999999887754321 11111100111111221100000011111
Q ss_pred CccccC----CCCccccccccee--hhhHHHHHHHHHHhh-----ChHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHH
Q 003805 420 ASCKDL----YGTQCIGIFGKIR--SCKSVAILQMLEKQM-----GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFAN 488 (794)
Q Consensus 420 ~~~~~~----~~~~~~~~f~~i~--Y~Kg~~vl~mLe~~l-----G~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~e 488 (794)
++.+. ...+. ..-+.+. |.||++|--+|+..| |+.++..+++.+.+.+... ++..+.++++.+++
T Consensus 334 -sS~~awik~yr~d~-ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~--~~~~t~e~v~av~~ 409 (558)
T COG3975 334 -SSFDAWIKYYRPDE-NSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRA--ERGYTPEDVQAVLE 409 (558)
T ss_pred -cccchhHHhhcccc-cccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcC--ccCCCHHHHHHHHH
Confidence 11110 11100 0111222 899999998888877 5678999999999988763 34679999999999
Q ss_pred HhcCCCcccHHhHHhhhccCCCceEEEE
Q 003805 489 KVGNLERPFLKEFFPRWVGTCGCPVLRM 516 (794)
Q Consensus 489 ~~~~~~~~dl~~f~~~Wv~~~G~P~l~v 516 (794)
.+.| .|+..||++.+++.--|.+.-
T Consensus 410 ~~tg---~dl~~f~~~~i~~~~~~~l~~ 434 (558)
T COG3975 410 NVTG---LDLATFFDEYIEGTEPPPLNP 434 (558)
T ss_pred hhcc---ccHHHHHHHHhhcCCCCChhh
Confidence 9874 689999999999998877654
No 12
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=96.84 E-value=0.012 Score=63.82 Aligned_cols=139 Identities=16% Similarity=0.221 Sum_probs=92.8
Q ss_pred EEEecCCCceeEEEeccCchHHH---HHHHcccC-ChH---HHHHHHHHHHcCCCCchhHHhHHHHhh-ccCcchhHHHH
Q 003805 638 WIRADPEMEYLAEIHFNQPVQMW---INQLEKDG-DVV---AQAQAIAALEALPHLSFNVVNTLNNFL-SDSKAFWRVRI 709 (794)
Q Consensus 638 wIr~D~~~~~~~~v~~~~~~~m~---~~qL~~d~-dv~---aq~~a~~~l~~~~~~~~~~~~~L~~~l-~~~~~f~~VR~ 709 (794)
||.+|++..++|||++ ++.+| +.+|+.++ +.+ +-++++.+|++.+..+......|...+ .+|.. |.|+.
T Consensus 1 wi~~N~~~~GyyRV~Y--d~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~-~~vw~ 77 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNY--DEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETD-YVVWS 77 (324)
T ss_dssp EEEESGGGSSSSEEEE--CTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--S-HHHHH
T ss_pred CEEEeCCceEEEEEeC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCc-hHHHH
Confidence 9999999999999955 55565 67887655 444 445888999998888877777788888 77754 99999
Q ss_pred HHHHHHHhhccc-c--ccccc--H-----HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhcCChhHHHHH
Q 003805 710 EAAYALANTASE-E--TDWAG--L-----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEVIALRLFHMPLPWLELL 779 (794)
Q Consensus 710 ~Aa~~L~~~~~~-~--~~~~g--~-----~~L~~~f~~~~~~~~~~i~~~n~f~~~~~y~~~kai~~a~~~~~~~~~~~~ 779 (794)
.+...|..+... . ..... + ..+...+++.-.++ +++ .+...-.++..|...+| =..+|++.+
T Consensus 78 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-----~~~--~~~~~~~lr~~~~~~a~-~~~~~~~~a 149 (324)
T PF11838_consen 78 TALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDP-----RPG--EDHNDRLLRALLLSLAC-GDPECVAEA 149 (324)
T ss_dssp HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSS-----S----SCHHHHHHHHHHHHHHH-T-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCC-----ccc--ccHHHHHHHHHHHHHhc-cchhHHHHH
Confidence 999999987632 1 11111 1 12233344332332 222 67888889999888888 888899888
Q ss_pred HHHHHHHH
Q 003805 780 TTKAQEKL 787 (794)
Q Consensus 780 ~~~~~~~~ 787 (794)
.....+-+
T Consensus 150 ~~~~~~~~ 157 (324)
T PF11838_consen 150 RELFKAWL 157 (324)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666544
No 13
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=94.79 E-value=0.022 Score=52.37 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhccccCCCCCC--chHHHHHHHHHHHHHHH
Q 003805 348 KLSFALARQWFGVYITPELPN--DEWLLDGLAGFLTDSFI 385 (794)
Q Consensus 348 ~iaHElAHQWfG~~Vt~~~w~--d~WL~EG~A~y~~~~~~ 385 (794)
+|+||-+||=.-|.=-...-+ =.||.||||+|++..-+
T Consensus 4 T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 4 TIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred HHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 689999999876542222111 27999999999976544
No 14
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=94.74 E-value=0.032 Score=66.79 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=78.1
Q ss_pred cccceehhhHHHHHHHHHHhhChHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhcC-----------CCcccHHhH
Q 003805 433 IFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN-----------LERPFLKEF 501 (794)
Q Consensus 433 ~f~~i~Y~Kg~~vl~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~e~~~~-----------~~~~dl~~f 501 (794)
.|....-.|+.++.+|+++++|.+-|.+.+++.+...... ....|-..+-...| ..+++++-+
T Consensus 444 ~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~------~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~ 517 (1180)
T KOG1932|consen 444 SYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM------LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMG 517 (1180)
T ss_pred hHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh------HHHHHHHHHHhccCCeeEEEEEEEeeccccccHH
Confidence 3444445799999999999999999999999999876542 23333333332222 246789999
Q ss_pred HhhhccCCCceEEEEEEEEecCCcEEEEEEEeecCCC
Q 003805 502 FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVK 538 (794)
Q Consensus 502 ~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~i~q~~~~~ 538 (794)
++||+.++|...+.|...||++++.++..++|..+..
T Consensus 518 i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 518 IDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred HHHHhhhccccceeeecccchhhhhhhhhccccccCC
Confidence 9999999999999999999999999999999876543
No 15
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=94.47 E-value=0.3 Score=53.01 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHh--hccccCCC--CCCchHHHHHHHHHHHHHHHHHHh-Cchh---HHHHHHHHhcchhhhccCCCcccC
Q 003805 346 SIKLSFALARQW--FGVYITPE--LPNDEWLLDGLAGFLTDSFIKKFL-GNNE---ARYRRYKANCAVCKADDSGATALS 417 (794)
Q Consensus 346 ~~~iaHElAHQW--fG~~Vt~~--~w~d~WL~EG~A~y~~~~~~~~~~-G~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 417 (794)
..+||||+-|+- .-+.|... .-.|+|||||+|.-++.++-.+.. |.+. .|++.|.. ..... ..
T Consensus 140 ~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~-------~~~~~--~~ 210 (366)
T PF10460_consen 140 YSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNN-------YTSGN--YN 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhh-------ccccC--CC
Confidence 347999999974 33344443 346999999999999988765542 1111 22332221 00000 00
Q ss_pred CCCccccCCCCcccccccceehhhHHHHHHHHHHhhChHHHHHHHHHHHHhhhcCCCCCCCCHHH-HHHHHHHhcCCCcc
Q 003805 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKE-FRHFANKVGNLERP 496 (794)
Q Consensus 418 ~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~-f~~~~e~~~~~~~~ 496 (794)
+. ...... . .-.-..|..+.++..-|.+..|.+.+++.|. +... .+... +..+.+.++ .+.
T Consensus 211 ~~--l~~w~~--~--g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~~~~------tds~avl~aa~~~~~--~~~ 272 (366)
T PF10460_consen 211 CS--LTAWSS--F--GDSLASYSSSYSFGAYLYRQYGGDFYKKLLT----NSSS------TDSEAVLDAAIKQAG--PGN 272 (366)
T ss_pred cc--eeecCC--C--ccccccchhHHHHHHHHHHHcChHHHHHHHh----cCCC------CcHHHHHHHHHHhhc--CCC
Confidence 00 000100 0 0112458999999999999999888666554 2221 12233 334444443 245
Q ss_pred cHHhHHhhhccCC
Q 003805 497 FLKEFFPRWVGTC 509 (794)
Q Consensus 497 dl~~f~~~Wv~~~ 509 (794)
++.++|.+|.-.-
T Consensus 273 sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 273 SFGELLRRWGVAL 285 (366)
T ss_pred CHHHHHHHHHHHH
Confidence 7999999998766
No 16
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.46 E-value=0.16 Score=43.19 Aligned_cols=71 Identities=28% Similarity=0.295 Sum_probs=56.4
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 003805 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (794)
Q Consensus 659 m~~~qL~~d~dv~aq~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~~~~~~~~g~~~L~~~f~~ 737 (794)
..+..|..++|..-|..|+..|++.+ +..+...|.+.+.|+ .+.||.+|+.+|+++.+++ ..+.|.+++++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEAIPALIELLKDE--DPMVRRAAARALGRIGDPE----AIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHH----THHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHH----HHHHHHHHHcC
Confidence 35677888999999999999999864 456778899999775 6899999999999986532 56667776653
No 17
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=94.05 E-value=0.023 Score=51.78 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhccccCCC-----------CCCchHHHHHHHHHHHHHHHHHH
Q 003805 347 IKLSFALARQWFGVYITPE-----------LPNDEWLLDGLAGFLTDSFIKKF 388 (794)
Q Consensus 347 ~~iaHElAHQWfG~~Vt~~-----------~w~d~WL~EG~A~y~~~~~~~~~ 388 (794)
.++|||..|.|-|-.+-|. --+.+|+-||++.|++.+++.+.
T Consensus 6 ~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 6 GLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 4799999999987555554 44568999999999999887553
No 18
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=93.64 E-value=1.3 Score=44.51 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHhcchhhhccCCCcccCCCCcc
Q 003805 343 IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASC 422 (794)
Q Consensus 343 ~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (794)
.+..-+|.|||+|-|=.+--... --||.||+|.|+-.. .|- ..+.-..+
T Consensus 94 ~Ei~Gvl~HE~~H~~Q~~~~~~~---P~~liEGIADyVRl~-----aG~---------------------~~~~w~~p-- 142 (205)
T PF04450_consen 94 DEIIGVLYHEMVHCWQWDGRGTA---PGGLIEGIADYVRLK-----AGY---------------------APPHWKRP-- 142 (205)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCC---ChhheecHHHHHHHH-----cCC---------------------CCccccCC--
Confidence 34456999999996654432222 239999999998221 010 00000000
Q ss_pred ccCCCCcccccccceehhhHHHHHHHHHH-hhChHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHhcCCCcccHHhH
Q 003805 423 KDLYGTQCIGIFGKIRSCKSVAILQMLEK-QMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEF 501 (794)
Q Consensus 423 ~~~~~~~~~~~f~~i~Y~Kg~~vl~mLe~-~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~e~~~~~~~~dl~~f 501 (794)
... ..++ -.|.-.+..|.-||. +.|+ .|.+-|++=+.+..+. +...| +.+. |++++++
T Consensus 143 --~~~----~~wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y~------~~~~~----~~l~---G~~v~~L 201 (205)
T PF04450_consen 143 --GGG----DSWD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKYS------SDDFW----KELL---GKPVDEL 201 (205)
T ss_pred --CCC----CCcc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCCC------cHhHH----HHHH---CcCHHHH
Confidence 000 0111 247889999999998 6654 5666666666554441 22333 3333 3568877
Q ss_pred Hhh
Q 003805 502 FPR 504 (794)
Q Consensus 502 ~~~ 504 (794)
++.
T Consensus 202 W~e 204 (205)
T PF04450_consen 202 WAE 204 (205)
T ss_pred Hhh
Confidence 764
No 19
>PRK09687 putative lyase; Provisional
Probab=83.57 E-value=3.3 Score=43.96 Aligned_cols=70 Identities=29% Similarity=0.197 Sum_probs=55.0
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 003805 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (794)
Q Consensus 661 ~~qL~~d~dv~aq~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~~~~~~~~g~~~L~~~f~~ 737 (794)
+.-| .|.|-.-+..|+.+|+..+..+..+...|...|.|+ .+.||.+|+.+|+++..+ ..+++|++..+.
T Consensus 165 ~~~L-~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~~~----~av~~Li~~L~~ 234 (280)
T PRK09687 165 INLL-KDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALRKDK----RVLSVLIKELKK 234 (280)
T ss_pred HHHh-cCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHccCCh----hHHHHHHHHHcC
Confidence 4444 688888899999999987555566778899999876 589999999999988764 467788888763
No 20
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=79.78 E-value=4.4 Score=34.12 Aligned_cols=54 Identities=31% Similarity=0.270 Sum_probs=43.4
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHHHHHH
Q 003805 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 716 (794)
Q Consensus 659 m~~~qL~~d~dv~aq~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~ 716 (794)
.....| +|.|..-|..|+.+|++.+ +..+...|.+.+.++. -..||.+|+.+|+
T Consensus 35 ~L~~~l-~d~~~~vr~~a~~aL~~i~--~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 35 ALIELL-KDEDPMVRRAAARALGRIG--DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp HHHHHH-TSSSHHHHHHHHHHHHCCH--HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 345555 8999999999999999875 4456788999888864 4889999999996
No 21
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=78.28 E-value=2.9 Score=44.93 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 003805 345 TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (794)
Q Consensus 345 ~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~ 388 (794)
...+|-||||||=+.. -+|.=+||+||++.+..-+++.
T Consensus 165 LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 165 LARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHH
Confidence 3568999999994322 2477899999999987655544
No 22
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=76.19 E-value=31 Score=38.06 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=33.4
Q ss_pred EEecCCCceeEEEeccCchHHHHHHHcccCChHHHHHHHHHHHc
Q 003805 639 IRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (794)
Q Consensus 639 Ir~D~~~~~~~~v~~~~~~~m~~~qL~~d~dv~aq~~a~~~l~~ 682 (794)
.-+.-+|.---++++++++..+.-++++|.|-..|-||.+.|..
T Consensus 69 pSllRgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~ 112 (367)
T PF11940_consen 69 PSLLRGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLAT 112 (367)
T ss_dssp EEESTTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHH
T ss_pred eehhcCcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 56777888888898899999999999999999999999988764
No 23
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=76.02 E-value=9.9 Score=37.98 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhccccC----CCCCCchHHHHHHHHHHHHHHH
Q 003805 346 SIKLSFALARQWFGVYIT----PELPNDEWLLDGLAGFLTDSFI 385 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt----~~~w~d~WL~EG~A~y~~~~~~ 385 (794)
..+||||+.|.+--..+. ...--|..+.||+|.+++....
T Consensus 66 ~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~ 109 (195)
T PF10026_consen 66 PALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELY 109 (195)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHc
Confidence 458999999985333332 1223356799999999876544
No 24
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=74.82 E-value=4.5 Score=27.02 Aligned_cols=25 Identities=36% Similarity=0.275 Sum_probs=20.0
Q ss_pred HHHHhhccCcchhHHHHHHHHHHHhhc
Q 003805 693 TLNNFLSDSKAFWRVRIEAAYALANTA 719 (794)
Q Consensus 693 ~L~~~l~~~~~f~~VR~~Aa~~L~~~~ 719 (794)
.|...+.|+ -+.||..|+.+|+.+.
T Consensus 4 ~l~~~l~D~--~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDP--SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-S--SHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 466777886 5999999999999875
No 25
>PRK09687 putative lyase; Provisional
Probab=72.15 E-value=22 Score=37.68 Aligned_cols=53 Identities=25% Similarity=0.178 Sum_probs=43.8
Q ss_pred HHcccCChHHHHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 003805 663 QLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (794)
Q Consensus 663 qL~~d~dv~aq~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~ 719 (794)
.+..|.|..-|..|+.+|++.+. ..++.+|.+.|.|+. +.||..|+.+|+++.
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~~--~~ai~~L~~~L~d~~--~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIND--EAAIPLLINLLKDPN--GDVRNWAAFALNSNK 187 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccCC--HHHHHHHHHHhcCCC--HHHHHHHHHHHhcCC
Confidence 33578888899999999998754 457789999999874 579999999999873
No 26
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=71.27 E-value=4.3 Score=26.80 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 003805 705 WRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (794)
Q Consensus 705 ~~VR~~Aa~~L~~~~~~~~~~~g~~~L~~~f 735 (794)
|.||.+||.+|+++..++ +...|+++.
T Consensus 1 ~~vR~~aa~aLg~~~~~~----a~~~L~~~l 27 (30)
T smart00567 1 PLVRHEAAFALGQLGDEE----AVPALIKAL 27 (30)
T ss_pred CHHHHHHHHHHHHcCCHh----HHHHHHHHh
Confidence 579999999999886543 445565543
No 27
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=71.03 E-value=5.3 Score=25.83 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHH
Q 003805 707 VRIEAAYALANTASEETDWAGLLHLVKFYK 736 (794)
Q Consensus 707 VR~~Aa~~L~~~~~~~~~~~g~~~L~~~f~ 736 (794)
||.+||.+|+++..++ .++.|+++.+
T Consensus 1 VR~~Aa~aLg~igd~~----ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR----AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHH----HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH----HHHHHHHHhc
Confidence 7999999999888743 5666766543
No 28
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=69.13 E-value=5.1 Score=40.87 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHH
Q 003805 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKK 387 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~ 387 (794)
..+|-||||||=|... +|.=+||+||++.+..-+++
T Consensus 198 A~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~ 233 (376)
T COG4324 198 ASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRK 233 (376)
T ss_pred HHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHH
Confidence 4589999999976432 57789999999997655443
No 29
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=65.59 E-value=18 Score=27.54 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=21.8
Q ss_pred HHhHHHHhhccCcchhHHHHHHHHHHHhh
Q 003805 690 VVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (794)
Q Consensus 690 ~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~ 718 (794)
+...|...|.|... .||..|+.+|+++
T Consensus 29 ~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 29 LLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 45568888888755 9999999999864
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.76 E-value=16 Score=45.71 Aligned_cols=86 Identities=31% Similarity=0.332 Sum_probs=55.3
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 003805 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (794)
Q Consensus 661 ~~qL~~d~dv~aq~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (794)
+.+|.+|+|...|..|+.+|+..+... .....|...|.|+ .|.||.+|+.+|+.+..++ .+..|++..+
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~~-~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l~~~~----a~~~L~~~L~---- 848 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCPP-DDVAAATAALRAS--AWQVRQGAARALAGAAADV----AVPALVEALT---- 848 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCcc-hhHHHHHHHhcCC--ChHHHHHHHHHHHhccccc----hHHHHHHHhc----
Confidence 345557777777888888887765321 2234566777775 4788888888888766432 3355666554
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhcC
Q 003805 741 DENIGLPRPNDFRDFSEYFVLEVIALRLFHM 771 (794)
Q Consensus 741 ~~~~~i~~~n~f~~~~~y~~~kai~~a~~~~ 771 (794)
+++ -.|+++-..||+.+
T Consensus 849 D~~--------------~~VR~~A~~aL~~~ 865 (897)
T PRK13800 849 DPH--------------LDVRKAAVLALTRW 865 (897)
T ss_pred CCC--------------HHHHHHHHHHHhcc
Confidence 332 25778888888886
No 31
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=62.56 E-value=1.2e+02 Score=37.22 Aligned_cols=119 Identities=13% Similarity=0.223 Sum_probs=57.7
Q ss_pred cEEEEEcCCchhHHH--------HHHHHHHHHHHHHHHHcCCCC-CCCCccEEEECCCCcccccccccchhhhccccccC
Q 003805 265 LMSHICLPANVSKIH--------NTVEFFHNAFSHYETYLDAKF-PFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYD 335 (794)
Q Consensus 265 ~v~~~~~p~~~~~~~--------~~~~~~~~~l~~~e~~~g~~Y-P~~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~ 335 (794)
.|.+..+|...+.+. ...+.=..++++|.++.|..+ |-...+.-+--..+.-++ ..|+|-..|+....-.
T Consensus 144 ~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~KAD-~~G~G~AYY~~~w~a~ 222 (775)
T PF03272_consen 144 YIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAKAD-KSGPGAAYYGSNWTAQ 222 (775)
T ss_pred EEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEEec-CCCCCCccccccceec
Confidence 456667776655544 334555778888888888533 221111111000111122 2233444444332222
Q ss_pred ccc-chhhh---hHHHHHHHHHHHHhhccccCC-CCCCchHHHHHHHHHHHHHHH
Q 003805 336 EKV-IDQAI---DTSIKLSFALARQWFGVYITP-ELPNDEWLLDGLAGFLTDSFI 385 (794)
Q Consensus 336 ~~~-~~~~~---~~~~~iaHElAHQWfG~~Vt~-~~w~d~WL~EG~A~y~~~~~~ 385 (794)
... ...-. .+--.+-|||+|.+=|..+.. ..+.+.| |-=+|.++++.++
T Consensus 223 ss~s~~~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~ 276 (775)
T PF03272_consen 223 SSSSLSFYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYM 276 (775)
T ss_pred CchhHHHHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhc
Confidence 111 11001 011257899999998888733 3344555 4455666655444
No 32
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=60.62 E-value=11 Score=38.99 Aligned_cols=53 Identities=26% Similarity=0.224 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHHHHHHhhcccc
Q 003805 668 GDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE 722 (794)
Q Consensus 668 ~dv~aq~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~~~~ 722 (794)
..-.-|.|+..-|.... |..++-.|.+.|.|+..---||.|||.||+.+++++
T Consensus 199 ~SalfrhEvAfVfGQl~--s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~ 251 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQ--SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED 251 (289)
T ss_pred chHHHHHHHHHHHhhcc--chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH
Confidence 35556778888887653 334556788899988888899999999999999875
No 33
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=59.12 E-value=20 Score=35.67 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 003805 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~ 388 (794)
-.++|||+.|-|.-. .--.--+.++-||+...++++|++..
T Consensus 94 gsiLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 347999999999622 22222367999999999999998753
No 34
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=56.17 E-value=19 Score=34.03 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=32.2
Q ss_pred HHHHHHH-HHcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccCcccchh--hhhHHHHHHHHHHHHhhc
Q 003805 287 NAFSHYE-TYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQ--AIDTSIKLSFALARQWFG 359 (794)
Q Consensus 287 ~~l~~~e-~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~~~--~~~~~~~iaHElAHQWfG 359 (794)
+.++-++ .+|+.++|-+ .+.+-. .|-..+ |.... ...+-+++...+. ......+|.|||||.|..
T Consensus 5 ~~~~~~n~~~F~~~l~~~--~i~w~~-----r~~~~~-G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHP--KVVWNK-----RLRKTG-GRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCC--EEEEeh-----hhhhhh-HHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444454 7888777755 333322 111111 22222 2224444443331 122345899999999975
No 35
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=51.68 E-value=16 Score=30.60 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhhccccccCcccchh-hhhHHHHHHHHHHHHh
Q 003805 288 AFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQ-AIDTSIKLSFALARQW 357 (794)
Q Consensus 288 ~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~-~~~~~~~iaHElAHQW 357 (794)
+...+|..||.+ |+...+-.-|... ......+|--.+..+.+.+.+....+ ......+|+|||+|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~-~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAAS-RAAAALGARAFTVGNDIYFAPGKYNPDSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchh-hhhhccCCeEEEECCEEEEcCCCcCCCCCCcchhHhHHHHHHH
Confidence 456678899854 6665554332111 11122333223345555554332111 1123458999999964
No 36
>PRK04860 hypothetical protein; Provisional
Probab=49.14 E-value=42 Score=32.29 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccCcccch--hhhhHHHHHHHHHHHHhh
Q 003805 282 VEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVID--QAIDTSIKLSFALARQWF 358 (794)
Q Consensus 282 ~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~~--~~~~~~~~iaHElAHQWf 358 (794)
...+...+..-+++||.|||-+.. .|-.- +. . ||.... +..+=++|.... .......+|+|||||-|-
T Consensus 6 ~~~~~~~~~~a~~~f~~~f~~p~~--~f~~R---~r--t--aG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 6 MRRLRECLAQANLYFKRTFPEPKV--SYTQR---GT--S--AGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEE--EEeec---ch--h--hcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 344555566667888877776543 22211 11 1 232222 222323333211 112234589999999873
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=45.57 E-value=36 Score=42.61 Aligned_cols=51 Identities=24% Similarity=0.141 Sum_probs=42.2
Q ss_pred cccCChHHHHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 003805 665 EKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (794)
Q Consensus 665 ~~d~dv~aq~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~ 719 (794)
..|.|-.-+..|+.+|.+.+. .....+|...|.|+ -+.||.+|+.+|+++.
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~~--~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAAA--DVAVPALVEALTDP--HLDVRKAAVLALTRWP 866 (897)
T ss_pred hcCCChHHHHHHHHHHHhccc--cchHHHHHHHhcCC--CHHHHHHHHHHHhccC
Confidence 367777788899999998764 34668899999987 4899999999999873
No 38
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=45.49 E-value=22 Score=38.44 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHhcch
Q 003805 347 IKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405 (794)
Q Consensus 347 ~~iaHElAHQWfG~~Vt~~~w~d~WL~EG~A~y~~~~~~~~~~G~~~~~~~~~~~~~~~ 405 (794)
.++|||+|||= |- ..|+=|+|++++...+- .+..+||..+...-.+
T Consensus 198 ~T~~HElAHq~-G~-----------a~E~EANFiayLac~~s-~d~~frYSgy~~~l~y 243 (318)
T PF12725_consen 198 FTICHELAHQL-GF-----------ASEDEANFIAYLACINS-PDPYFRYSGYLFALRY 243 (318)
T ss_pred HHHHHHHHHHh-CC-----------CCHHHHHHHHHHHHhcC-CChheeHHHHHHHHHH
Confidence 47999999994 22 26888999998887543 4444566554443333
No 39
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=45.25 E-value=42 Score=33.49 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCccccccccc----chhhhccccccCcccchhhhhHHHHHHHHHH
Q 003805 279 HNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354 (794)
Q Consensus 279 ~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~~~~~~~~~~iaHElA 354 (794)
+.+...+...++.|++.+|.++ ++ |.+-+ + -.-||. |.++++..|+.-|.. -..-+|+||||
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~--~~---i~ir~-~---ksrWGsc~~~~~I~ln~~L~~~P~~-----~idYVvvHEL~ 173 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPP--PK---IKIRD-M---KSRWGSCSSKGNITLNWRLVMAPPE-----VIDYVVVHELC 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--ce---EEEee-h---hhccccCCCCCcEEeecccccCCcc-----HHHHHHHHHHH
Confidence 3455677888889999988643 33 33321 1 124543 345555554433321 12448999999
Q ss_pred HHhhcc
Q 003805 355 RQWFGV 360 (794)
Q Consensus 355 HQWfG~ 360 (794)
|-..-|
T Consensus 174 Hl~~~n 179 (205)
T PF01863_consen 174 HLRHPN 179 (205)
T ss_pred HhccCC
Confidence 987544
No 40
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=44.84 E-value=1.1e+02 Score=33.17 Aligned_cols=72 Identities=32% Similarity=0.351 Sum_probs=54.2
Q ss_pred hHHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 003805 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (794)
Q Consensus 657 ~~m~~~qL~~d~dv~aq~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~~~~~~~~g~~~L~~~f~ 736 (794)
.......| .++|..-+..|+..|...+ +..++..|.+.+.|+. +.||-.|+.+|++...+. ....|++++.
T Consensus 45 ~~~~~~~l-~~~~~~vr~~aa~~l~~~~--~~~av~~l~~~l~d~~--~~vr~~a~~aLg~~~~~~----a~~~li~~l~ 115 (335)
T COG1413 45 ADELLKLL-EDEDLLVRLSAAVALGELG--SEEAVPLLRELLSDED--PRVRDAAADALGELGDPE----AVPPLVELLE 115 (335)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHhhhc--hHHHHHHHHHHhcCCC--HHHHHHHHHHHHccCChh----HHHHHHHHHH
Confidence 34445555 6669999999999998764 4456777889998875 499999999999887653 5566777776
Q ss_pred h
Q 003805 737 S 737 (794)
Q Consensus 737 ~ 737 (794)
.
T Consensus 116 ~ 116 (335)
T COG1413 116 N 116 (335)
T ss_pred c
Confidence 4
No 41
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=39.30 E-value=29 Score=30.74 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhcccc
Q 003805 345 TSIKLSFALARQWFGVYI 362 (794)
Q Consensus 345 ~~~~iaHElAHQWfG~~V 362 (794)
.+.+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 355899999999988764
No 42
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=36.93 E-value=46 Score=31.62 Aligned_cols=16 Identities=13% Similarity=-0.135 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHhhc
Q 003805 344 DTSIKLSFALARQWFG 359 (794)
Q Consensus 344 ~~~~~iaHElAHQWfG 359 (794)
....+|.|||+|.|..
T Consensus 59 ~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 59 ELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3445899999999974
No 43
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=35.52 E-value=1.4e+02 Score=28.46 Aligned_cols=75 Identities=4% Similarity=0.038 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCCCCCCC--ccEEE-EC--CCCcccccccccchhhhcc--ccccCcccchhhhhHHH
Q 003805 275 VSKIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQVF-LA--PEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSI 347 (794)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~V~-vp--~~~~~~~~~~gagl~~~~~--~lL~~~~~~~~~~~~~~ 347 (794)
...+..+...+.++.+||.++|| .=++.- ..++. |. ....++. |-+.-++|.+ ...+.+- .....
T Consensus 66 ~~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAf--W~g~~m~yGdG~~~~f~~~-----~~~lD 137 (150)
T PF01447_consen 66 DSAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAF--WNGSQMVYGDGDGQIFKPF-----ASSLD 137 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EE--E-SSSEEEE---SSSBS-G-----GG-HH
T ss_pred ccHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCcc--ccCCEEEEECCCCcccccC-----ccccc
Confidence 34566777788999999999999 446542 33432 32 1122332 2222233322 2122221 12245
Q ss_pred HHHHHHHHHh
Q 003805 348 KLSFALARQW 357 (794)
Q Consensus 348 ~iaHElAHQW 357 (794)
++||||+|--
T Consensus 138 VvaHEltHGV 147 (150)
T PF01447_consen 138 VVAHELTHGV 147 (150)
T ss_dssp HHHHHHHHHH
T ss_pred eeeecccccc
Confidence 8999999963
No 44
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=30.68 E-value=60 Score=32.73 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhccccCC
Q 003805 346 SIKLSFALARQWFGVYITP 364 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt~ 364 (794)
.-+|+||++|-.-++....
T Consensus 90 ~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 90 AAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHHHHHHHHHHHTTHCCCC
T ss_pred HHHHHHHHHHHHcCCcchH
Confidence 4589999999998876554
No 45
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=28.02 E-value=39 Score=29.81 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHh
Q 003805 346 SIKLSFALARQW 357 (794)
Q Consensus 346 ~~~iaHElAHQW 357 (794)
+.+++|||+|-|
T Consensus 80 ~~TL~HEL~H~W 91 (141)
T PHA02456 80 RDTLAHELNHAW 91 (141)
T ss_pred HHHHHHHHHHHH
Confidence 457999999999
No 46
>COG3943 Virulence protein [General function prediction only]
Probab=26.72 E-value=1.2e+02 Score=30.67 Aligned_cols=118 Identities=23% Similarity=0.248 Sum_probs=74.9
Q ss_pred HHHHHHHcccCChHH-------HHHHHHHHHcCCCCchhHHhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHH
Q 003805 658 QMWINQLEKDGDVVA-------QAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (794)
Q Consensus 658 ~m~~~qL~~d~dv~a-------q~~a~~~l~~~~~~~~~~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~~~~~~~~g~~~ 730 (794)
.-|-+.|++=||+.+ |...|.+|+.--.++.....-+..++.|.-.|-.-+--||.-+-.-+.......||.
T Consensus 132 dy~~emlerirdiraser~vy~rv~eifa~aady~ps~qet~rFFatvQNKLH~A~tgqTAAElih~RADask~~MGLT- 210 (329)
T COG3943 132 DYFKEMLERIRDIRASERRVYLRVREIFALAADYNPSLQETTRFFATVQNKLHFACTGQTAAELIHQRADASKPHMGLT- 210 (329)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHhccccHHHHHHHhhccCCCCcCce-
Confidence 446677777777665 556667776432334334444666666655565566667776666665555566762
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 003805 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEVIALRLFHMPLPWLELLTTKAQEKL 787 (794)
Q Consensus 731 L~~~f~~~~~~~~~~i~~~n~f~~~~~y~~~kai~~a~~~~~~~~~~~~~~~~~~~~ 787 (794)
-|+ . .+|+-||-.=-.+|+-+-. ..-+.++.+-+++++..+||++.
T Consensus 211 ---tfk----g---a~v~k~dv~iAKNYLtedE-v~~lnrlVna~lD~AE~~A~r~~ 256 (329)
T COG3943 211 ---TFK----G---AIVRKNDVKIAKNYLTEDE-VFRLNRLVNAFLDLAEIKAQRQS 256 (329)
T ss_pred ---ecc----c---cccchhhHHHHHhccCHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 222 2 2778887775556665555 45677788899999999999874
No 47
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.44 E-value=37 Score=39.53 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=27.0
Q ss_pred HHhHHHHhhccCcchhHHHHHHHHHHHhhccccccc--ccHHHHHHHHH
Q 003805 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--AGLLHLVKFYK 736 (794)
Q Consensus 690 ~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~~~~~~~--~g~~~L~~~f~ 736 (794)
+|-||.--|+|| ||-||.+|..+|.+++.....+ ..+..|..+|.
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfN 420 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFN 420 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Confidence 456666666665 7777777777777766643333 33445555543
No 48
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=26.25 E-value=1.9e+02 Score=32.71 Aligned_cols=105 Identities=6% Similarity=0.018 Sum_probs=54.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCCC--CccEEEECCCC-cccccccccchhhh--ccccccCcccchhhhhHH
Q 003805 272 PANVSKIHNTVEFFHNAFSHYETYLDAKFPFG--SYKQVFLAPEM-AVSSSTFGAAMGIF--SSQILYDEKVIDQAIDTS 346 (794)
Q Consensus 272 p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~--k~~~V~vp~~~-~~~~~~~gagl~~~--~~~lL~~~~~~~~~~~~~ 346 (794)
|+....+..+-..+....+||.++||- =-++ .+.++..--+. -.-...|-+-=.+| .+...|++-. ...
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr-~S~Dn~g~~l~s~vHyG~~ynNAfWdG~qMvyGDGDG~~f~~~S-----~sL 338 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGR-NSYDNNGMPLVSTVHYGKNYNNAFWDGDQMVYGDGDGSFFTPFS-----GSL 338 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhcc-cCcCCCCCceEEEEeeccccccccccCceeEeecCCcceecccc-----ccc
Confidence 444455667777888999999999982 2332 23443211000 00000121111122 2223333211 123
Q ss_pred HHHHHHHHHHh---hccccCCCCCCchHHHHHHHHHHHHHH
Q 003805 347 IKLSFALARQW---FGVYITPELPNDEWLLDGLAGFLTDSF 384 (794)
Q Consensus 347 ~~iaHElAHQW---fG~~Vt~~~w~d~WL~EG~A~y~~~~~ 384 (794)
.++||||.|.- --+++.-..-- =|||+|+.-+..++
T Consensus 339 DVvAHElTHGvtq~tA~L~Y~~qsG--ALNEsfSDvfG~~i 377 (507)
T COG3227 339 DVVAHELTHGVTQQTAGLIYRGQSG--ALNESFSDVFGTLI 377 (507)
T ss_pred ceehhhhcchhhhhccCceecCCCC--chhhHHHHHHHHHH
Confidence 47999999954 34555444322 58999999886544
No 49
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=25.52 E-value=40 Score=32.91 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHh
Q 003805 346 SIKLSFALARQW 357 (794)
Q Consensus 346 ~~~iaHElAHQW 357 (794)
..++||||+|||
T Consensus 112 ~~~~aHElGH~l 123 (173)
T PF13574_consen 112 IDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehhhhHhhc
Confidence 347999999997
No 50
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=24.97 E-value=33 Score=38.35 Aligned_cols=74 Identities=26% Similarity=0.281 Sum_probs=48.5
Q ss_pred HHhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHH----HHHHH
Q 003805 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFV----LEVIA 765 (794)
Q Consensus 690 ~~~~L~~~l~~~~~f~~VR~~Aa~~L~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~i~~~n~f~~~~~y~~----~kai~ 765 (794)
+-.+|+..+.+. .-++||+.||.+|+.-+..+.....+..+.+.-- + .+.++|+|-+|.+|-- ++.||
T Consensus 574 ~F~~L~~Lv~~~-~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv----~---aLi~s~~~v~f~eY~~~Dsl~~q~c 645 (728)
T KOG4535|consen 574 AFNALTSLVTSC-KNFKVRIRAAAALSVPGKREQYGDQYALSWNALV----T---ALQKSEDTIDFLEYKYCDSLRTQIC 645 (728)
T ss_pred HHHHHHHHHHHh-ccceEeehhhhhhcCCCCcccchhHHhHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777765 3589999999999988876533222222221111 1 1558899999999964 66677
Q ss_pred HHHhcC
Q 003805 766 LRLFHM 771 (794)
Q Consensus 766 ~a~~~~ 771 (794)
.|+.++
T Consensus 646 ~av~hl 651 (728)
T KOG4535|consen 646 QALIHL 651 (728)
T ss_pred HHHHHH
Confidence 777654
No 51
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.90 E-value=79 Score=27.30 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHhhcccc-cccccH-HHHHHHHHhcCCCCCC
Q 003805 704 FWRVRIEAAYALANTASEE-TDWAGL-LHLVKFYKSRRFDENI 744 (794)
Q Consensus 704 f~~VR~~Aa~~L~~~~~~~-~~~~g~-~~L~~~f~~~~~~~~~ 744 (794)
-|.+|-.||..|+.+...- ..+.++ +.+.+.+.+-+.+|..
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~ 61 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKK 61 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCC
Confidence 5999999999999987653 345554 6777888877777743
No 52
>PRK03982 heat shock protein HtpX; Provisional
Probab=23.61 E-value=1.3e+02 Score=31.92 Aligned_cols=16 Identities=6% Similarity=-0.219 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhcc
Q 003805 345 TSIKLSFALARQWFGV 360 (794)
Q Consensus 345 ~~~~iaHElAHQWfG~ 360 (794)
..-++|||++|-==|+
T Consensus 125 l~AVlAHElgHi~~~h 140 (288)
T PRK03982 125 LEGVIAHELTHIKNRD 140 (288)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3458999999975443
No 53
>PRK04351 hypothetical protein; Provisional
Probab=23.55 E-value=87 Score=29.80 Aligned_cols=11 Identities=9% Similarity=-0.064 Sum_probs=9.3
Q ss_pred HHHHHHHHHHH
Q 003805 346 SIKLSFALARQ 356 (794)
Q Consensus 346 ~~~iaHElAHQ 356 (794)
..+|+|||+|-
T Consensus 62 ~~vv~HElcH~ 72 (149)
T PRK04351 62 IGIIKHELCHY 72 (149)
T ss_pred HhhHHHHHHHH
Confidence 45899999994
No 54
>PRK03001 M48 family peptidase; Provisional
Probab=23.26 E-value=1.4e+02 Score=31.74 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhc
Q 003805 345 TSIKLSFALARQWFG 359 (794)
Q Consensus 345 ~~~~iaHElAHQWfG 359 (794)
..-++|||++|-==+
T Consensus 124 l~aVlAHElgHi~~~ 138 (283)
T PRK03001 124 IRGVMAHELAHVKHR 138 (283)
T ss_pred HHHHHHHHHHHHhCC
Confidence 345899999997433
No 55
>PRK01345 heat shock protein HtpX; Provisional
Probab=22.38 E-value=1.3e+02 Score=32.52 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCccEEEECCCCccccccccc----chhhhccccccCcccchhhhhHHHHHHHHHHHHhhcc
Q 003805 285 FHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGV 360 (794)
Q Consensus 285 ~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~ 360 (794)
..+.++-+.+..|++ .++ +..+|+...++. ..|. +.+.+++.||-.- + ..+..-++|||++|.==++
T Consensus 69 L~~~v~~La~~agi~--~p~--v~vid~~~~NAF-a~G~~~~~~~V~vt~gLL~~L---~-~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPK--VYIIDNPQPNAF-ATGRNPENAAVAATTGLLQRL---S-PEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCc--EEEEcCCCcceE-EecCCCCCeEEEechHHHhhC---C-HHHHHHHHHHHHHHHHcCC
Confidence 345555666667765 445 344453333332 2221 1233344443211 1 1233458999999975444
No 56
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=21.94 E-value=70 Score=36.06 Aligned_cols=53 Identities=6% Similarity=0.048 Sum_probs=29.5
Q ss_pred CCCCccEEEECCCCcccccccccchhhhccccccCcccchhhhhHHHHHHHHHHHHh
Q 003805 301 PFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQW 357 (794)
Q Consensus 301 P~~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQW 357 (794)
|-..+.++.|-+...++.-..| |-+...+.+|...+. ..+...|||||++|-=
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~G-g~v~vntGLll~ae~---esElagViAHEigHv~ 142 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPG-GYVVVNTGLLLTAEN---ESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCeEEEEecCCccchhhcCC-ceEEEehHHHHhcCC---HHHHHHHHHHHHHHHh
Confidence 4455788888755444432223 344445554433221 1234569999999953
No 57
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=20.39 E-value=62 Score=32.04 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhccc
Q 003805 346 SIKLSFALARQWFGVY 361 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~ 361 (794)
..++.|||||.++|+-
T Consensus 83 ~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 83 LGTMLHELAHNVHGPH 98 (186)
T ss_pred HHHHHHHHHhcccCCc
Confidence 4589999999998873
Done!