Query 003806
Match_columns 794
No_of_seqs 737 out of 4103
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 12:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 2E-104 4E-109 904.8 47.5 564 181-782 23-590 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 9E-103 2E-107 856.2 43.2 438 324-783 296-735 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 1.7E-96 4E-101 850.6 54.7 449 324-786 303-752 (774)
4 CHL00176 ftsH cell division pr 100.0 1.7E-90 3.7E-95 808.5 55.9 582 178-793 47-636 (638)
5 PRK10733 hflB ATP-dependent me 100.0 8.3E-86 1.8E-90 774.8 58.3 562 182-783 31-596 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 1.5E-78 3.2E-83 695.7 48.2 449 321-781 44-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 3.7E-57 8E-62 482.0 26.2 254 323-579 142-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.4E-56 5.3E-61 544.2 26.4 319 355-705 1620-1995(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 7.3E-53 1.6E-57 475.8 28.7 324 244-579 324-678 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 3.5E-51 7.5E-56 455.9 29.7 253 325-581 504-775 (802)
11 KOG0729 26S proteasome regulat 100.0 4.9E-45 1.1E-49 374.8 18.7 258 323-583 168-426 (435)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 2.6E-44 5.7E-49 401.0 22.1 227 326-558 184-414 (802)
13 KOG0727 26S proteasome regulat 100.0 1.4E-43 3E-48 361.9 23.0 251 324-577 147-398 (408)
14 KOG0736 Peroxisome assembly fa 100.0 2.9E-43 6.3E-48 400.7 24.1 250 324-578 664-935 (953)
15 KOG0728 26S proteasome regulat 100.0 2.8E-43 6E-48 359.4 21.0 250 325-577 140-390 (404)
16 KOG0652 26S proteasome regulat 100.0 3E-43 6.5E-48 360.8 19.4 251 324-577 163-414 (424)
17 KOG0726 26S proteasome regulat 100.0 2.7E-43 5.9E-48 365.7 16.2 252 324-578 177-429 (440)
18 COG1223 Predicted ATPase (AAA+ 100.0 1.2E-42 2.6E-47 356.6 20.4 241 324-574 113-354 (368)
19 KOG0738 AAA+-type ATPase [Post 100.0 9.4E-42 2E-46 365.8 21.4 246 325-578 205-472 (491)
20 PTZ00454 26S protease regulato 100.0 5.4E-41 1.2E-45 374.6 28.2 252 324-578 137-389 (398)
21 PRK03992 proteasome-activating 100.0 1.1E-39 2.4E-44 364.2 27.7 254 324-580 123-377 (389)
22 COG0464 SpoVK ATPases of the A 100.0 2.7E-39 5.9E-44 371.1 25.2 250 322-575 232-483 (494)
23 PTZ00361 26 proteosome regulat 100.0 3.1E-39 6.7E-44 363.2 24.8 251 324-577 175-426 (438)
24 PF01434 Peptidase_M41: Peptid 100.0 4.7E-40 1E-44 339.0 15.3 211 564-779 1-213 (213)
25 KOG0735 AAA+-type ATPase [Post 100.0 6.2E-39 1.3E-43 362.5 22.2 225 328-558 663-888 (952)
26 TIGR01243 CDC48 AAA family ATP 100.0 2E-38 4.3E-43 379.7 26.4 250 324-578 445-713 (733)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 9E-38 1.9E-42 356.0 25.5 244 326-577 222-465 (489)
28 TIGR01242 26Sp45 26S proteasom 100.0 5.1E-37 1.1E-41 339.8 26.8 249 324-575 114-363 (364)
29 KOG0739 AAA+-type ATPase [Post 100.0 2.8E-38 6.1E-43 329.2 12.5 229 322-558 123-353 (439)
30 KOG0737 AAA+-type ATPase [Post 100.0 3E-37 6.4E-42 331.5 20.5 228 323-558 83-314 (386)
31 KOG0651 26S proteasome regulat 100.0 6E-38 1.3E-42 329.0 13.4 249 325-576 125-374 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 5.2E-35 1.1E-39 333.4 25.3 256 322-581 172-484 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 6.9E-32 1.5E-36 306.1 20.4 237 327-577 180-418 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 1.8E-32 3.8E-37 302.5 14.5 250 326-577 213-492 (744)
35 KOG0732 AAA+-type ATPase conta 100.0 4.6E-32 9.9E-37 322.2 18.6 247 326-577 259-527 (1080)
36 TIGR01243 CDC48 AAA family ATP 100.0 2.4E-31 5.2E-36 318.8 24.9 246 326-577 172-437 (733)
37 PLN00020 ribulose bisphosphate 100.0 1.4E-31 3.1E-36 290.4 20.7 260 327-605 110-393 (413)
38 KOG0740 AAA+-type ATPase [Post 100.0 7.6E-30 1.6E-34 282.6 15.8 244 324-575 145-404 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.9 2.1E-21 4.6E-26 209.0 20.3 212 331-556 22-255 (287)
40 TIGR02881 spore_V_K stage V sp 99.9 3E-21 6.6E-26 204.7 19.9 212 330-556 4-239 (261)
41 KOG0742 AAA+-type ATPase [Post 99.9 4.8E-21 1E-25 207.3 18.8 235 327-573 350-610 (630)
42 TIGR02880 cbbX_cfxQ probable R 99.9 6.2E-21 1.3E-25 205.1 18.7 211 333-557 23-255 (284)
43 PF00004 AAA: ATPase family as 99.9 3E-21 6.5E-26 180.7 13.6 130 368-502 1-132 (132)
44 KOG0743 AAA+-type ATPase [Post 99.9 8.9E-21 1.9E-25 209.6 16.6 208 328-547 197-412 (457)
45 COG0466 Lon ATP-dependent Lon 99.8 1.7E-20 3.6E-25 215.6 15.8 315 331-699 322-659 (782)
46 PRK00080 ruvB Holliday junctio 99.8 1.5E-18 3.3E-23 189.9 18.9 217 327-574 20-249 (328)
47 PF05496 RuvB_N: Holliday junc 99.8 7.5E-19 1.6E-23 181.0 15.1 196 323-552 15-226 (233)
48 TIGR00635 ruvB Holliday juncti 99.8 2.5E-18 5.5E-23 185.4 19.8 214 330-574 2-228 (305)
49 KOG2004 Mitochondrial ATP-depe 99.8 4.1E-19 8.9E-24 203.0 12.5 175 332-518 411-598 (906)
50 KOG0744 AAA+-type ATPase [Post 99.8 1.4E-18 3.1E-23 184.3 12.2 240 331-574 141-413 (423)
51 KOG0736 Peroxisome assembly fa 99.8 1.1E-17 2.3E-22 192.8 18.5 206 361-575 427-653 (953)
52 TIGR00763 lon ATP-dependent pr 99.8 6.1E-18 1.3E-22 204.4 17.0 202 332-555 320-554 (775)
53 KOG0735 AAA+-type ATPase [Post 99.8 1.5E-17 3.2E-22 190.1 18.6 232 332-576 408-649 (952)
54 COG0464 SpoVK ATPases of the A 99.8 2.5E-17 5.5E-22 189.7 20.4 219 351-577 4-228 (494)
55 COG2256 MGS1 ATPase related to 99.7 1.5E-17 3.2E-22 181.7 15.7 210 324-577 16-240 (436)
56 COG2255 RuvB Holliday junction 99.7 5.3E-17 1.1E-21 170.5 17.7 216 326-575 20-251 (332)
57 TIGR02902 spore_lonB ATP-depen 99.7 2.6E-17 5.5E-22 191.2 17.0 219 320-574 53-331 (531)
58 TIGR02639 ClpA ATP-dependent C 99.7 3.5E-17 7.5E-22 196.8 17.1 224 327-576 177-430 (731)
59 PRK14962 DNA polymerase III su 99.7 9.9E-16 2.1E-20 175.3 20.0 206 325-573 7-240 (472)
60 PRK14956 DNA polymerase III su 99.7 1E-15 2.2E-20 173.8 19.8 212 324-572 10-243 (484)
61 PRK11034 clpA ATP-dependent Cl 99.7 9.2E-16 2E-20 183.8 19.9 221 330-576 184-434 (758)
62 PRK00149 dnaA chromosomal repl 99.7 9.5E-16 2.1E-20 174.9 18.3 225 326-576 116-350 (450)
63 PRK04195 replication factor C 99.7 2.3E-15 5E-20 173.2 20.5 209 325-572 7-222 (482)
64 PRK10787 DNA-binding ATP-depen 99.7 8.2E-16 1.8E-20 185.2 16.9 164 332-517 322-507 (784)
65 PRK07003 DNA polymerase III su 99.7 2.9E-15 6.3E-20 175.9 20.0 210 324-570 8-239 (830)
66 TIGR00362 DnaA chromosomal rep 99.7 2.6E-15 5.6E-20 169.1 18.9 222 327-576 105-338 (405)
67 PRK14961 DNA polymerase III su 99.7 4.3E-15 9.2E-20 165.2 20.2 212 324-572 8-241 (363)
68 PRK13342 recombination factor 99.7 2.8E-15 6E-20 169.4 18.9 203 326-576 6-220 (413)
69 TIGR02928 orc1/cdc6 family rep 99.6 1.3E-14 2.9E-19 160.1 23.1 224 328-575 11-274 (365)
70 PRK12323 DNA polymerase III su 99.6 1.9E-15 4E-20 175.6 16.6 209 325-570 9-244 (700)
71 PRK06645 DNA polymerase III su 99.6 6.4E-15 1.4E-19 169.6 20.9 215 324-572 13-253 (507)
72 PRK14960 DNA polymerase III su 99.6 4.4E-15 9.5E-20 172.9 19.6 205 325-572 8-240 (702)
73 PRK06893 DNA replication initi 99.6 6.2E-15 1.4E-19 153.9 18.4 212 326-572 10-227 (229)
74 PRK14088 dnaA chromosomal repl 99.6 3.7E-15 7.9E-20 169.7 17.7 224 326-576 99-333 (440)
75 PRK14958 DNA polymerase III su 99.6 6.7E-15 1.5E-19 170.0 18.6 205 325-572 9-241 (509)
76 PRK00411 cdc6 cell division co 99.6 4.5E-14 9.7E-19 157.6 24.3 227 327-576 25-283 (394)
77 PRK07994 DNA polymerase III su 99.6 1.6E-14 3.4E-19 169.8 20.9 208 326-570 10-239 (647)
78 PRK14964 DNA polymerase III su 99.6 1.4E-14 3.1E-19 165.7 19.7 204 326-572 7-238 (491)
79 PRK14949 DNA polymerase III su 99.6 1.5E-14 3.3E-19 172.7 20.3 196 324-552 8-225 (944)
80 TIGR03345 VI_ClpV1 type VI sec 99.6 7.5E-15 1.6E-19 178.7 18.0 217 327-570 182-426 (852)
81 PRK14963 DNA polymerase III su 99.6 2.5E-14 5.4E-19 165.0 20.8 205 324-572 6-237 (504)
82 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.7E-14 3.6E-19 148.6 17.4 206 327-572 10-225 (226)
83 PRK08691 DNA polymerase III su 99.6 1.4E-14 3E-19 170.0 18.7 211 325-572 9-241 (709)
84 PRK12402 replication factor C 99.6 4.4E-14 9.5E-19 153.9 21.0 209 326-573 9-247 (337)
85 PRK13341 recombination factor 99.6 1.8E-14 3.9E-19 172.0 19.1 213 323-575 19-247 (725)
86 PRK05563 DNA polymerase III su 99.6 2.8E-14 6.1E-19 166.7 19.4 206 324-572 8-241 (559)
87 PRK08903 DnaA regulatory inact 99.6 3.5E-14 7.6E-19 147.2 17.8 202 327-573 13-224 (227)
88 TIGR02397 dnaX_nterm DNA polym 99.6 3.8E-14 8.2E-19 155.8 18.6 207 324-573 6-240 (355)
89 PRK14951 DNA polymerase III su 99.6 4.4E-14 9.6E-19 165.6 19.7 210 326-572 10-246 (618)
90 PRK14086 dnaA chromosomal repl 99.6 3.7E-14 8E-19 165.0 18.8 223 327-576 283-516 (617)
91 KOG2028 ATPase related to the 99.6 3.1E-14 6.7E-19 153.3 16.6 215 323-576 129-369 (554)
92 PLN03025 replication factor C 99.6 3.3E-14 7E-19 155.4 17.3 202 325-571 6-219 (319)
93 PRK08084 DNA replication initi 99.6 9.4E-14 2E-18 145.6 19.8 206 327-572 17-233 (235)
94 PHA02544 44 clamp loader, smal 99.6 9E-14 2E-18 150.9 19.8 206 324-570 13-226 (316)
95 PRK12422 chromosomal replicati 99.6 6E-14 1.3E-18 159.8 18.8 193 365-576 141-344 (445)
96 PRK14969 DNA polymerase III su 99.6 6.7E-14 1.5E-18 162.5 19.4 210 326-572 10-241 (527)
97 PRK14957 DNA polymerase III su 99.6 1.5E-13 3.3E-18 159.3 20.8 211 325-572 9-241 (546)
98 PRK10865 protein disaggregatio 99.6 6.3E-14 1.4E-18 171.0 18.2 166 327-518 173-356 (857)
99 PRK14965 DNA polymerase III su 99.5 9.7E-14 2.1E-18 162.8 18.2 204 325-571 9-240 (576)
100 PRK14970 DNA polymerase III su 99.5 1.6E-13 3.4E-18 152.6 18.9 212 324-572 9-230 (367)
101 PRK14952 DNA polymerase III su 99.5 1.4E-13 3E-18 160.9 19.0 212 325-572 6-241 (584)
102 PRK07133 DNA polymerase III su 99.5 2.2E-13 4.8E-18 161.2 20.8 212 324-572 10-240 (725)
103 PRK05342 clpX ATP-dependent pr 99.5 1.1E-13 2.4E-18 156.0 17.3 182 330-514 68-323 (412)
104 PRK07940 DNA polymerase III su 99.5 1.1E-13 2.5E-18 155.2 17.2 186 330-548 3-215 (394)
105 PRK14959 DNA polymerase III su 99.5 1E-13 2.2E-18 162.0 17.1 206 324-572 8-241 (624)
106 CHL00095 clpC Clp protease ATP 99.5 1.2E-13 2.6E-18 168.3 18.5 202 329-557 176-403 (821)
107 PRK05896 DNA polymerase III su 99.5 1.9E-13 4.2E-18 158.9 18.7 210 324-570 8-239 (605)
108 TIGR03346 chaperone_ClpB ATP-d 99.5 1.3E-13 2.7E-18 168.7 18.0 204 327-556 168-397 (852)
109 PRK08451 DNA polymerase III su 99.5 3.5E-13 7.6E-18 155.7 20.3 192 325-555 7-226 (535)
110 PRK07764 DNA polymerase III su 99.5 1.6E-13 3.5E-18 165.8 18.2 208 325-570 8-241 (824)
111 PRK14953 DNA polymerase III su 99.5 4.4E-13 9.6E-18 154.2 20.5 211 325-572 9-241 (486)
112 PRK09111 DNA polymerase III su 99.5 4.7E-13 1E-17 157.1 20.6 213 324-573 16-255 (598)
113 PTZ00112 origin recognition co 99.5 4.5E-13 9.8E-18 158.1 20.0 218 332-576 755-1007(1164)
114 PRK08727 hypothetical protein; 99.5 3.8E-13 8.3E-18 140.9 17.5 209 327-574 14-230 (233)
115 PRK06647 DNA polymerase III su 99.5 4.7E-13 1E-17 156.3 20.1 211 325-572 9-241 (563)
116 PRK14087 dnaA chromosomal repl 99.5 3.7E-13 8.1E-18 153.6 18.4 192 365-575 141-348 (450)
117 PRK14955 DNA polymerase III su 99.5 3E-13 6.5E-18 152.2 17.2 216 324-572 8-254 (397)
118 PRK05642 DNA replication initi 99.5 6.7E-13 1.4E-17 139.2 18.3 180 365-572 45-232 (234)
119 PRK06305 DNA polymerase III su 99.5 8.1E-13 1.8E-17 151.0 20.1 206 324-572 9-243 (451)
120 KOG0989 Replication factor C, 99.5 1.1E-13 2.3E-18 147.2 11.5 194 323-553 27-236 (346)
121 PF00308 Bac_DnaA: Bacterial d 99.5 4.4E-13 9.5E-18 139.3 15.7 201 327-555 3-216 (219)
122 PRK00440 rfc replication facto 99.5 1.8E-12 3.9E-17 140.0 20.7 204 325-573 10-224 (319)
123 COG2812 DnaX DNA polymerase II 99.5 4.8E-13 1E-17 153.2 16.0 197 326-555 10-228 (515)
124 PRK14948 DNA polymerase III su 99.5 1.3E-12 2.9E-17 154.2 19.4 209 324-570 8-240 (620)
125 PRK14954 DNA polymerase III su 99.5 2.1E-12 4.6E-17 152.0 20.8 215 325-572 9-254 (620)
126 PF05673 DUF815: Protein of un 99.5 1.7E-12 3.7E-17 135.7 17.6 195 325-550 20-244 (249)
127 PRK05201 hslU ATP-dependent pr 99.5 9.1E-13 2E-17 147.2 16.4 171 333-513 16-345 (443)
128 TIGR00390 hslU ATP-dependent p 99.5 9.5E-13 2.1E-17 147.0 16.2 175 333-512 13-342 (441)
129 PRK06620 hypothetical protein; 99.5 1E-12 2.2E-17 136.2 15.3 196 326-572 10-213 (214)
130 TIGR00382 clpX endopeptidase C 99.5 1.1E-12 2.4E-17 147.6 16.5 180 333-515 78-330 (413)
131 COG1224 TIP49 DNA helicase TIP 99.4 2.2E-12 4.7E-17 139.3 17.7 128 425-574 292-431 (450)
132 TIGR02640 gas_vesic_GvpN gas v 99.4 2.1E-12 4.5E-17 137.6 17.4 187 366-577 22-259 (262)
133 PRK14950 DNA polymerase III su 99.4 2.7E-12 6E-17 151.1 20.1 212 324-572 8-242 (585)
134 PRK13407 bchI magnesium chelat 99.4 8.2E-13 1.8E-17 145.2 13.8 220 327-576 3-307 (334)
135 PRK11034 clpA ATP-dependent Cl 99.4 3.1E-12 6.7E-17 153.7 17.7 165 333-518 459-668 (758)
136 TIGR02903 spore_lon_C ATP-depe 99.4 1.3E-11 2.7E-16 146.1 22.1 219 326-574 148-429 (615)
137 TIGR02639 ClpA ATP-dependent C 99.4 3.7E-12 8.1E-17 153.6 17.0 163 332-518 454-664 (731)
138 COG0593 DnaA ATPase involved i 99.4 1.2E-11 2.6E-16 138.2 19.4 229 325-580 80-318 (408)
139 PRK14971 DNA polymerase III su 99.4 2E-11 4.3E-16 144.2 20.7 210 326-572 11-243 (614)
140 CHL00081 chlI Mg-protoporyphyr 99.4 4.7E-12 1E-16 139.7 13.0 222 326-577 11-324 (350)
141 PRK09087 hypothetical protein; 99.4 5.8E-12 1.3E-16 131.6 13.0 172 366-574 45-221 (226)
142 COG1474 CDC6 Cdc6-related prot 99.3 6.5E-11 1.4E-15 131.9 21.6 218 331-574 16-264 (366)
143 TIGR02030 BchI-ChlI magnesium 99.3 1.7E-11 3.7E-16 135.1 15.6 219 330-577 2-311 (337)
144 cd00009 AAA The AAA+ (ATPases 99.3 2.6E-11 5.7E-16 113.1 14.2 124 364-501 18-150 (151)
145 TIGR01650 PD_CobS cobaltochela 99.3 1.3E-11 2.9E-16 134.6 11.3 187 365-577 64-296 (327)
146 TIGR02442 Cob-chelat-sub cobal 99.3 5E-11 1.1E-15 141.7 16.4 215 330-577 2-306 (633)
147 PF05621 TniB: Bacterial TniB 99.3 5.9E-11 1.3E-15 127.7 15.1 219 332-570 34-284 (302)
148 TIGR03345 VI_ClpV1 type VI sec 99.3 9.1E-11 2E-15 143.3 17.6 197 332-552 566-827 (852)
149 TIGR03346 chaperone_ClpB ATP-d 99.2 2E-10 4.2E-15 140.9 17.6 202 332-554 565-824 (852)
150 TIGR00368 Mg chelatase-related 99.2 2.7E-10 5.9E-15 131.6 17.7 212 328-573 188-497 (499)
151 COG0714 MoxR-like ATPases [Gen 99.2 4.2E-10 9.2E-15 123.6 18.0 133 366-515 44-201 (329)
152 TIGR00764 lon_rel lon-related 99.2 5.3E-10 1.1E-14 132.2 19.7 103 471-576 268-392 (608)
153 PRK10865 protein disaggregatio 99.2 3.6E-10 7.9E-15 138.4 18.8 167 331-518 567-781 (857)
154 CHL00095 clpC Clp protease ATP 99.2 2.9E-10 6.3E-15 139.0 17.9 166 332-518 509-734 (821)
155 PF06068 TIP49: TIP49 C-termin 99.2 2E-10 4.3E-15 126.0 14.4 68 329-403 21-90 (398)
156 smart00382 AAA ATPases associa 99.2 5.4E-11 1.2E-15 109.5 8.3 129 365-503 2-147 (148)
157 COG0542 clpA ATP-binding subun 99.2 9.5E-11 2.1E-15 139.2 12.3 161 332-518 491-707 (786)
158 PRK09112 DNA polymerase III su 99.2 5.2E-10 1.1E-14 124.2 17.4 189 327-550 18-243 (351)
159 smart00350 MCM minichromosome 99.2 3.1E-10 6.6E-15 131.9 16.3 223 333-575 204-504 (509)
160 PRK15424 propionate catabolism 99.2 8.5E-11 1.8E-15 136.7 10.9 211 329-567 216-477 (538)
161 TIGR02329 propionate_PrpR prop 99.2 1.3E-10 2.9E-15 135.0 11.7 214 328-570 208-465 (526)
162 PRK07471 DNA polymerase III su 99.2 1.1E-09 2.4E-14 122.2 18.3 186 326-548 13-239 (365)
163 COG2607 Predicted ATPase (AAA+ 99.1 1.8E-09 4E-14 111.9 17.5 195 325-550 53-276 (287)
164 PHA02244 ATPase-like protein 99.1 1.4E-09 3.1E-14 120.2 17.4 149 329-506 94-264 (383)
165 TIGR03015 pepcterm_ATPase puta 99.1 1.8E-09 3.8E-14 114.2 17.1 191 366-574 44-265 (269)
166 COG3829 RocR Transcriptional r 99.1 8.9E-11 1.9E-15 133.4 7.5 212 327-569 240-491 (560)
167 PRK13531 regulatory ATPase Rav 99.1 1.9E-09 4.2E-14 122.8 18.3 214 333-578 21-286 (498)
168 KOG1942 DNA helicase, TBP-inte 99.1 2.6E-09 5.7E-14 113.1 17.3 100 472-575 326-438 (456)
169 COG0542 clpA ATP-binding subun 99.1 1.9E-09 4E-14 128.4 17.4 208 325-558 163-396 (786)
170 PRK05564 DNA polymerase III su 99.1 1.3E-09 2.8E-14 118.9 14.7 169 330-538 2-182 (313)
171 TIGR01817 nifA Nif-specific re 99.1 3.4E-10 7.4E-15 132.1 10.1 209 326-569 190-439 (534)
172 PF01078 Mg_chelatase: Magnesi 99.1 1.5E-10 3.3E-15 118.8 6.1 119 330-480 1-158 (206)
173 PRK11331 5-methylcytosine-spec 99.1 1.3E-09 2.9E-14 123.2 14.1 155 331-502 174-357 (459)
174 PF07728 AAA_5: AAA domain (dy 99.1 1.8E-10 3.8E-15 110.3 5.8 113 367-494 1-139 (139)
175 PRK10820 DNA-binding transcrip 99.0 8.5E-10 1.9E-14 128.5 12.3 210 327-568 199-447 (520)
176 PRK09862 putative ATP-dependen 99.0 2.3E-09 5.1E-14 123.7 15.5 210 329-573 188-490 (506)
177 COG1221 PspF Transcriptional r 99.0 4.6E-10 9.9E-15 125.4 9.4 200 327-557 73-311 (403)
178 PRK07399 DNA polymerase III su 99.0 3.5E-09 7.5E-14 116.0 16.1 183 330-549 2-223 (314)
179 TIGR00678 holB DNA polymerase 99.0 2.7E-09 5.7E-14 107.8 14.0 144 363-538 12-183 (188)
180 PRK05022 anaerobic nitric oxid 99.0 1.2E-09 2.5E-14 127.1 12.9 198 330-556 185-421 (509)
181 KOG1969 DNA replication checkp 99.0 6.3E-09 1.4E-13 121.0 18.5 206 324-558 263-518 (877)
182 TIGR02974 phageshock_pspF psp 99.0 1E-09 2.2E-14 120.9 11.2 193 334-555 1-233 (329)
183 PRK11608 pspF phage shock prot 99.0 1.7E-09 3.6E-14 119.0 12.9 197 330-555 4-240 (326)
184 PRK11388 DNA-binding transcrip 99.0 7.4E-10 1.6E-14 132.0 10.9 213 328-572 321-568 (638)
185 PRK15429 formate hydrogenlyase 99.0 2.3E-09 5E-14 128.9 14.9 199 328-555 372-609 (686)
186 TIGR00602 rad24 checkpoint pro 99.0 2.3E-09 5E-14 126.6 14.3 206 323-555 75-328 (637)
187 TIGR02031 BchD-ChlD magnesium 99.0 3.7E-09 8E-14 124.8 15.9 192 366-577 17-260 (589)
188 PRK04132 replication factor C 99.0 3.6E-09 7.7E-14 128.0 15.7 171 368-571 567-750 (846)
189 COG0606 Predicted ATPase with 99.0 3.7E-10 8.1E-15 126.9 6.6 212 328-573 175-483 (490)
190 COG1219 ClpX ATP-dependent pro 99.0 8.4E-10 1.8E-14 118.1 8.8 125 334-466 63-203 (408)
191 COG0470 HolB ATPase involved i 99.0 4E-09 8.7E-14 114.0 14.3 145 332-508 1-173 (325)
192 COG1220 HslU ATP-dependent pro 99.0 3.8E-09 8.2E-14 113.9 12.1 84 425-513 251-346 (444)
193 COG2204 AtoC Response regulato 99.0 2E-09 4.4E-14 122.2 9.9 209 328-568 137-384 (464)
194 PF07724 AAA_2: AAA domain (Cd 98.9 2.2E-09 4.7E-14 107.8 7.7 111 366-482 4-131 (171)
195 PRK08058 DNA polymerase III su 98.9 1.3E-08 2.9E-13 112.1 14.6 148 330-513 3-179 (329)
196 PRK08116 hypothetical protein; 98.9 1.2E-08 2.6E-13 109.4 13.8 124 364-505 113-251 (268)
197 COG3604 FhlA Transcriptional r 98.9 4.6E-09 1E-13 118.3 10.2 200 327-555 218-456 (550)
198 KOG2680 DNA helicase TIP49, TB 98.9 2.4E-08 5.3E-13 106.2 14.7 129 425-575 289-429 (454)
199 PRK05707 DNA polymerase III su 98.9 2E-08 4.4E-13 110.7 13.9 132 362-516 19-178 (328)
200 KOG0741 AAA+-type ATPase [Post 98.8 1.4E-08 3.1E-13 114.4 11.7 153 347-512 526-682 (744)
201 PTZ00111 DNA replication licen 98.8 2.6E-08 5.6E-13 120.4 14.6 158 333-513 451-654 (915)
202 TIGR02915 PEP_resp_reg putativ 98.8 1.4E-08 2.9E-13 115.6 9.7 207 330-568 137-382 (445)
203 KOG0991 Replication factor C, 98.8 2.6E-08 5.7E-13 103.0 9.3 185 323-550 18-214 (333)
204 PF00158 Sigma54_activat: Sigm 98.8 3.6E-08 7.8E-13 98.7 10.1 134 334-495 1-155 (168)
205 PRK10923 glnG nitrogen regulat 98.7 4.1E-08 8.9E-13 112.6 11.4 210 330-571 136-384 (469)
206 PRK11361 acetoacetate metaboli 98.7 5.9E-08 1.3E-12 110.6 12.2 209 330-570 141-388 (457)
207 PRK13765 ATP-dependent proteas 98.7 1.1E-07 2.4E-12 112.8 14.2 102 471-574 277-399 (637)
208 KOG0745 Putative ATP-dependent 98.7 4.4E-08 9.5E-13 108.6 9.8 74 367-440 228-307 (564)
209 PRK12377 putative replication 98.7 9.4E-08 2E-12 101.5 12.0 101 365-481 101-206 (248)
210 PRK06964 DNA polymerase III su 98.7 9.8E-08 2.1E-12 105.7 12.2 134 362-515 18-203 (342)
211 PRK07952 DNA replication prote 98.7 1.4E-07 3.1E-12 99.9 12.9 132 327-481 67-205 (244)
212 PF13177 DNA_pol3_delta2: DNA 98.7 8.8E-08 1.9E-12 95.2 9.8 133 336-502 1-160 (162)
213 KOG1514 Origin recognition com 98.7 3.6E-07 7.7E-12 106.6 15.7 194 367-577 424-657 (767)
214 KOG2227 Pre-initiation complex 98.6 8.7E-07 1.9E-11 99.6 17.4 205 333-559 151-383 (529)
215 PRK08939 primosomal protein Dn 98.6 2.2E-07 4.7E-12 101.6 12.0 133 328-481 123-261 (306)
216 COG1239 ChlI Mg-chelatase subu 98.6 3.5E-07 7.6E-12 102.0 13.2 160 328-517 13-233 (423)
217 PRK06871 DNA polymerase III su 98.6 5.7E-07 1.2E-11 99.0 14.3 134 362-515 21-178 (325)
218 PRK15115 response regulator Gl 98.6 4.5E-07 9.7E-12 103.2 13.5 183 366-570 158-379 (444)
219 PF01637 Arch_ATPase: Archaeal 98.6 3.7E-07 8E-12 93.1 11.1 166 365-545 20-232 (234)
220 PF07726 AAA_3: ATPase family 98.6 1.8E-08 3.9E-13 96.2 1.4 111 367-494 1-129 (131)
221 TIGR01818 ntrC nitrogen regula 98.6 2.2E-07 4.7E-12 106.3 10.4 210 331-572 133-381 (463)
222 PRK08181 transposase; Validate 98.6 4.2E-07 9E-12 97.7 11.7 100 365-481 106-209 (269)
223 PRK06526 transposase; Provisio 98.5 2.1E-07 4.6E-12 99.2 8.4 101 364-481 97-201 (254)
224 PF03215 Rad17: Rad17 cell cyc 98.5 2E-06 4.4E-11 100.1 16.1 208 324-556 11-269 (519)
225 PRK07993 DNA polymerase III su 98.5 8E-07 1.7E-11 98.3 12.1 133 362-514 21-178 (334)
226 PRK13406 bchD magnesium chelat 98.5 8.3E-07 1.8E-11 104.6 12.7 191 366-577 26-252 (584)
227 PRK08769 DNA polymerase III su 98.5 1.2E-06 2.5E-11 96.4 12.9 133 362-514 23-183 (319)
228 PRK10365 transcriptional regul 98.5 3.3E-07 7.1E-12 104.0 8.9 203 333-570 140-384 (441)
229 KOG0990 Replication factor C, 98.5 2.5E-07 5.4E-12 99.7 7.3 165 323-521 32-208 (360)
230 PRK06835 DNA replication prote 98.5 1E-06 2.3E-11 97.2 12.1 70 365-436 183-258 (329)
231 smart00763 AAA_PrkA PrkA AAA d 98.5 3.5E-07 7.7E-12 101.3 8.0 84 331-421 49-145 (361)
232 PF13173 AAA_14: AAA domain 98.4 1.3E-06 2.8E-11 83.0 10.8 69 366-436 3-73 (128)
233 PRK09183 transposase/IS protei 98.4 1E-06 2.3E-11 94.1 10.3 72 364-436 101-176 (259)
234 PRK06090 DNA polymerase III su 98.4 2.7E-06 5.8E-11 93.5 13.5 129 362-513 22-177 (319)
235 COG1484 DnaC DNA replication p 98.4 1.6E-06 3.5E-11 92.5 11.4 72 364-436 104-179 (254)
236 PRK06921 hypothetical protein; 98.4 2.6E-06 5.5E-11 91.5 12.9 69 364-435 116-188 (266)
237 KOG1051 Chaperone HSP104 and r 98.4 1.4E-06 3.1E-11 105.5 12.0 128 333-481 563-711 (898)
238 PF14532 Sigma54_activ_2: Sigm 98.4 2.9E-07 6.3E-12 88.6 4.6 80 335-438 1-83 (138)
239 PF01695 IstB_IS21: IstB-like 98.4 5.9E-07 1.3E-11 90.8 6.8 102 363-481 45-150 (178)
240 PF13401 AAA_22: AAA domain; P 98.4 1.3E-06 2.8E-11 82.0 8.7 98 365-478 4-125 (131)
241 KOG2035 Replication factor C, 98.3 3.3E-06 7.2E-11 89.6 10.6 179 327-538 8-220 (351)
242 PRK08699 DNA polymerase III su 98.3 3.3E-06 7.2E-11 93.1 10.6 132 362-514 18-183 (325)
243 KOG0478 DNA replication licens 98.3 8.1E-06 1.8E-10 95.1 13.2 163 333-506 430-616 (804)
244 COG1241 MCM2 Predicted ATPase 98.2 9.3E-06 2E-10 96.5 13.5 222 332-576 286-593 (682)
245 KOG0480 DNA replication licens 98.2 3.6E-06 7.8E-11 97.3 9.5 221 331-574 344-642 (764)
246 PF00493 MCM: MCM2/3/5 family 98.2 5E-07 1.1E-11 99.8 2.6 218 333-574 25-325 (331)
247 PF05729 NACHT: NACHT domain 98.2 1.4E-05 3E-10 77.3 12.0 142 367-518 2-165 (166)
248 cd01120 RecA-like_NTPases RecA 98.2 9.1E-06 2E-10 77.9 10.5 109 368-481 2-137 (165)
249 PF12775 AAA_7: P-loop contain 98.2 4.8E-06 1E-10 89.7 9.4 138 365-518 33-195 (272)
250 KOG1970 Checkpoint RAD17-RFC c 98.2 6.2E-05 1.3E-09 86.4 17.9 177 365-555 110-320 (634)
251 PF03969 AFG1_ATPase: AFG1-lik 98.1 1.1E-05 2.4E-10 90.2 11.0 103 362-481 59-168 (362)
252 TIGR02237 recomb_radB DNA repa 98.1 1.7E-05 3.6E-10 81.3 9.6 78 361-438 8-111 (209)
253 PLN03210 Resistant to P. syrin 98.0 3.3E-05 7.1E-10 98.4 13.6 179 327-540 179-389 (1153)
254 COG3283 TyrR Transcriptional r 98.0 5.1E-05 1.1E-09 83.1 12.5 203 327-555 199-432 (511)
255 COG3284 AcoR Transcriptional a 98.0 8E-06 1.7E-10 95.1 6.8 184 367-572 338-554 (606)
256 KOG0482 DNA replication licens 98.0 1.4E-05 3E-10 90.4 8.0 233 332-574 342-637 (721)
257 PF00931 NB-ARC: NB-ARC domain 97.9 0.00014 3E-09 77.6 14.4 174 343-547 4-202 (287)
258 COG3267 ExeA Type II secretory 97.9 0.00035 7.7E-09 74.0 15.8 186 367-569 53-267 (269)
259 cd01124 KaiC KaiC is a circadi 97.9 0.00012 2.6E-09 73.0 11.6 102 368-481 2-140 (187)
260 KOG0481 DNA replication licens 97.8 9.6E-05 2.1E-09 83.9 11.4 169 333-512 332-523 (729)
261 PRK05917 DNA polymerase III su 97.8 8.9E-05 1.9E-09 80.5 10.1 122 362-503 16-154 (290)
262 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00025 5.4E-09 74.8 13.2 137 364-521 31-182 (231)
263 TIGR01618 phage_P_loop phage n 97.8 6.4E-05 1.4E-09 78.7 8.4 73 364-438 11-95 (220)
264 PRK05818 DNA polymerase III su 97.8 0.00047 1E-08 73.7 15.0 121 363-503 5-147 (261)
265 PF00910 RNA_helicase: RNA hel 97.7 9.4E-05 2E-09 68.4 7.3 23 368-390 1-23 (107)
266 COG1485 Predicted ATPase [Gene 97.7 0.00014 3E-09 80.0 9.7 127 337-481 30-171 (367)
267 PRK09361 radB DNA repair and r 97.7 0.00014 3.1E-09 75.4 9.3 39 361-399 19-60 (225)
268 PRK00131 aroK shikimate kinase 97.7 0.00013 2.9E-09 71.6 8.5 41 363-405 2-42 (175)
269 PRK07132 DNA polymerase III su 97.7 0.00059 1.3E-08 74.7 14.1 127 363-514 16-160 (299)
270 TIGR02012 tigrfam_recA protein 97.7 0.00018 3.9E-09 79.3 10.0 118 361-478 51-189 (321)
271 PRK11823 DNA repair protein Ra 97.7 0.00024 5.3E-09 81.8 11.4 79 361-439 76-171 (446)
272 KOG1051 Chaperone HSP104 and r 97.7 0.00036 7.8E-09 85.2 13.2 200 331-556 185-411 (898)
273 COG1618 Predicted nucleotide k 97.6 0.00046 1E-08 68.6 11.0 27 363-389 3-29 (179)
274 PRK08533 flagellar accessory p 97.6 0.00051 1.1E-08 72.3 12.2 77 361-437 20-130 (230)
275 cd01394 radB RadB. The archaea 97.6 0.00037 8.1E-09 71.9 11.0 39 361-399 15-56 (218)
276 KOG0477 DNA replication licens 97.6 0.00039 8.4E-09 80.7 11.7 169 333-517 450-651 (854)
277 cd01121 Sms Sms (bacterial rad 97.6 0.00028 6.1E-09 79.4 10.3 79 361-439 78-173 (372)
278 TIGR02858 spore_III_AA stage I 97.6 0.00019 4.1E-09 77.4 8.2 113 366-501 112-256 (270)
279 PRK15455 PrkA family serine pr 97.6 8.9E-05 1.9E-09 86.6 5.9 63 330-398 74-137 (644)
280 PRK07276 DNA polymerase III su 97.6 0.0006 1.3E-08 74.2 11.9 128 362-512 21-171 (290)
281 PF13207 AAA_17: AAA domain; P 97.5 6.2E-05 1.3E-09 69.9 3.7 30 368-397 2-31 (121)
282 PRK06067 flagellar accessory p 97.5 0.00051 1.1E-08 71.8 10.9 40 361-400 21-63 (234)
283 PF06480 FtsH_ext: FtsH Extrac 97.5 2.7E-05 5.8E-10 70.8 0.9 31 178-208 25-55 (110)
284 cd03283 ABC_MutS-like MutS-lik 97.5 0.00049 1.1E-08 70.8 10.1 105 365-484 25-151 (199)
285 PRK08118 topology modulation p 97.5 0.00017 3.8E-09 72.1 6.5 32 367-398 3-34 (167)
286 PRK00771 signal recognition pa 97.5 0.0013 2.9E-08 75.4 14.4 39 363-401 93-134 (437)
287 COG1373 Predicted ATPase (AAA+ 97.5 0.0013 2.8E-08 74.8 14.1 135 367-522 39-186 (398)
288 KOG1968 Replication factor C, 97.5 0.00011 2.4E-09 89.9 5.8 205 326-554 314-535 (871)
289 PHA00729 NTP-binding motif con 97.5 0.00019 4.1E-09 75.3 6.6 25 366-390 18-42 (226)
290 cd00983 recA RecA is a bacter 97.5 0.00046 9.9E-09 76.2 9.6 118 361-478 51-189 (325)
291 PRK12723 flagellar biosynthesi 97.5 0.001 2.2E-08 75.3 12.4 132 363-510 172-329 (388)
292 cd01128 rho_factor Transcripti 97.4 0.0015 3.2E-08 69.7 12.5 114 365-478 16-164 (249)
293 PRK14722 flhF flagellar biosyn 97.4 0.00037 7.9E-09 78.4 8.1 111 362-488 134-266 (374)
294 PRK13949 shikimate kinase; Pro 97.4 0.0011 2.4E-08 66.5 10.8 32 366-397 2-33 (169)
295 PF13671 AAA_33: AAA domain; P 97.4 0.00045 9.8E-09 65.9 7.6 36 368-405 2-37 (143)
296 PRK07261 topology modulation p 97.4 0.00029 6.3E-09 70.7 6.3 34 367-400 2-35 (171)
297 PF05707 Zot: Zonular occluden 97.4 0.00021 4.6E-09 72.9 5.4 124 368-504 3-147 (193)
298 TIGR02688 conserved hypothetic 97.4 0.0014 3E-08 74.4 12.0 61 365-437 209-273 (449)
299 PF06745 KaiC: KaiC; InterPro 97.3 0.001 2.2E-08 69.1 10.1 108 361-479 15-159 (226)
300 PRK09376 rho transcription ter 97.3 0.00089 1.9E-08 75.4 10.1 73 368-440 172-272 (416)
301 KOG2170 ATPase of the AAA+ sup 97.3 0.002 4.2E-08 69.8 12.0 96 333-437 83-191 (344)
302 cd01393 recA_like RecA is a b 97.3 0.00079 1.7E-08 69.6 8.7 116 361-478 15-166 (226)
303 PF07693 KAP_NTPase: KAP famil 97.3 0.0048 1E-07 67.2 15.2 78 424-518 172-265 (325)
304 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0021 4.5E-08 67.7 12.0 40 361-400 17-59 (237)
305 PRK06762 hypothetical protein; 97.3 0.00089 1.9E-08 66.0 8.3 41 364-404 1-41 (166)
306 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00099 2.1E-08 69.3 9.1 116 361-478 15-167 (235)
307 cd01131 PilT Pilus retraction 97.3 0.00095 2.1E-08 68.5 8.7 66 368-433 4-83 (198)
308 KOG2228 Origin recognition com 97.2 0.0017 3.7E-08 71.2 10.5 161 333-517 25-220 (408)
309 PF00437 T2SE: Type II/IV secr 97.2 0.00028 6E-09 75.4 4.4 99 326-434 98-207 (270)
310 cd00046 DEXDc DEAD-like helica 97.2 0.0017 3.8E-08 59.5 9.2 24 366-389 1-24 (144)
311 PRK13948 shikimate kinase; Pro 97.2 0.0012 2.6E-08 67.2 8.7 43 363-407 8-50 (182)
312 PF14516 AAA_35: AAA-like doma 97.2 0.019 4.1E-07 63.7 18.9 172 365-548 31-240 (331)
313 TIGR00416 sms DNA repair prote 97.2 0.0018 3.9E-08 74.8 10.9 78 361-438 90-184 (454)
314 cd03216 ABC_Carb_Monos_I This 97.2 0.00096 2.1E-08 66.2 7.5 106 362-482 23-143 (163)
315 KOG2383 Predicted ATPase [Gene 97.2 0.0023 5.1E-08 71.5 11.0 158 362-552 111-297 (467)
316 PRK14974 cell division protein 97.2 0.002 4.4E-08 71.6 10.6 73 364-436 139-234 (336)
317 PF03266 NTPase_1: NTPase; In 97.2 0.00063 1.4E-08 68.3 6.0 27 367-393 1-30 (168)
318 cd00464 SK Shikimate kinase (S 97.2 0.00072 1.6E-08 65.3 6.1 39 367-407 1-39 (154)
319 PF13604 AAA_30: AAA domain; P 97.1 0.0017 3.7E-08 66.6 8.9 97 366-479 19-131 (196)
320 PRK05973 replicative DNA helic 97.1 0.0059 1.3E-07 64.8 13.0 39 361-399 60-101 (237)
321 PRK09354 recA recombinase A; P 97.1 0.0019 4.2E-08 72.0 9.7 78 361-438 56-152 (349)
322 PF06309 Torsin: Torsin; Inte 97.1 0.0014 3E-08 62.9 7.4 52 332-389 25-77 (127)
323 PRK13947 shikimate kinase; Pro 97.1 0.00044 9.5E-09 68.4 4.2 31 367-397 3-33 (171)
324 PF13191 AAA_16: AAA ATPase do 97.1 0.00034 7.5E-09 69.2 3.3 59 334-401 2-63 (185)
325 COG0703 AroK Shikimate kinase 97.1 0.0012 2.5E-08 66.6 7.0 40 366-407 3-42 (172)
326 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0055 1.2E-07 63.6 12.1 109 361-479 12-152 (224)
327 cd01130 VirB11-like_ATPase Typ 97.1 0.00066 1.4E-08 68.8 5.2 72 363-434 23-110 (186)
328 PTZ00202 tuzin; Provisional 97.1 0.032 7E-07 63.9 18.6 65 328-401 258-322 (550)
329 PRK03839 putative kinase; Prov 97.1 0.00048 1E-08 69.0 3.8 31 367-397 2-32 (180)
330 PRK13946 shikimate kinase; Pro 97.0 0.0015 3.2E-08 66.2 7.3 34 364-397 9-42 (184)
331 PRK10536 hypothetical protein; 97.0 0.0025 5.4E-08 68.2 9.2 22 367-388 76-97 (262)
332 PRK00625 shikimate kinase; Pro 97.0 0.00057 1.2E-08 69.0 4.2 31 367-397 2-32 (173)
333 cd01122 GP4d_helicase GP4d_hel 97.0 0.0027 5.8E-08 67.7 9.5 39 361-399 26-68 (271)
334 TIGR01420 pilT_fam pilus retra 97.0 0.0014 3.1E-08 72.9 7.7 69 366-434 123-205 (343)
335 TIGR02782 TrbB_P P-type conjug 97.0 0.00064 1.4E-08 74.4 4.8 70 365-434 132-214 (299)
336 PRK04296 thymidine kinase; Pro 97.0 0.0036 7.7E-08 63.9 9.8 70 367-436 4-90 (190)
337 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0043 9.4E-08 64.5 10.5 23 365-387 29-51 (213)
338 PRK10867 signal recognition pa 97.0 0.0098 2.1E-07 68.3 14.2 74 362-435 97-194 (433)
339 PF10236 DAP3: Mitochondrial r 97.0 0.029 6.2E-07 61.8 17.3 133 413-546 142-308 (309)
340 COG4619 ABC-type uncharacteriz 97.0 0.0045 9.7E-08 62.3 9.7 27 362-388 26-52 (223)
341 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0081 1.8E-07 62.4 12.2 38 361-398 16-56 (229)
342 COG1116 TauB ABC-type nitrate/ 97.0 0.0028 6.1E-08 67.1 8.7 23 366-388 30-52 (248)
343 PF00448 SRP54: SRP54-type pro 97.0 0.002 4.4E-08 66.3 7.4 131 365-509 1-156 (196)
344 cd00984 DnaB_C DnaB helicase C 97.0 0.003 6.5E-08 66.0 8.9 39 361-399 9-51 (242)
345 cd00227 CPT Chloramphenicol (C 96.9 0.00083 1.8E-08 67.2 4.4 39 365-403 2-40 (175)
346 PRK11889 flhF flagellar biosyn 96.9 0.0061 1.3E-07 69.0 11.5 72 364-435 240-331 (436)
347 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00073 1.6E-08 67.5 3.9 34 368-403 2-35 (183)
348 PRK12724 flagellar biosynthesi 96.9 0.0088 1.9E-07 68.2 12.9 115 364-488 222-353 (432)
349 COG5271 MDN1 AAA ATPase contai 96.9 0.0043 9.3E-08 78.3 10.7 138 364-517 1542-1704(4600)
350 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0053 1.2E-07 59.7 9.6 101 362-482 23-128 (144)
351 PRK14532 adenylate kinase; Pro 96.9 0.00084 1.8E-08 67.7 4.1 36 367-404 2-37 (188)
352 PRK14531 adenylate kinase; Pro 96.9 0.00097 2.1E-08 67.3 4.4 35 366-402 3-37 (183)
353 PHA02624 large T antigen; Prov 96.9 0.00039 8.4E-09 81.7 1.7 40 361-400 427-466 (647)
354 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0071 1.5E-07 64.8 11.2 39 361-399 32-73 (259)
355 TIGR02655 circ_KaiC circadian 96.9 0.0068 1.5E-07 70.7 11.9 78 361-438 259-367 (484)
356 cd03238 ABC_UvrA The excision 96.9 0.0067 1.5E-07 61.4 10.4 119 362-502 18-163 (176)
357 cd02020 CMPK Cytidine monophos 96.9 0.00086 1.9E-08 64.0 3.8 30 368-397 2-31 (147)
358 PLN02200 adenylate kinase fami 96.9 0.0012 2.5E-08 69.8 5.1 41 361-403 39-79 (234)
359 cd03228 ABCC_MRP_Like The MRP 96.9 0.003 6.5E-08 62.9 7.6 107 362-484 25-158 (171)
360 COG3854 SpoIIIAA ncharacterize 96.9 0.0027 5.9E-08 66.5 7.4 70 366-435 138-229 (308)
361 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0031 6.7E-08 61.8 7.5 107 363-484 23-143 (157)
362 PRK04328 hypothetical protein; 96.8 0.0099 2.1E-07 63.3 11.9 39 361-399 19-60 (249)
363 COG4178 ABC-type uncharacteriz 96.8 0.0021 4.6E-08 75.8 7.4 28 361-388 415-442 (604)
364 cd00544 CobU Adenosylcobinamid 96.8 0.0058 1.3E-07 61.5 9.4 93 368-464 2-113 (169)
365 cd03247 ABCC_cytochrome_bd The 96.8 0.0063 1.4E-07 61.0 9.7 106 362-483 25-159 (178)
366 PRK09519 recA DNA recombinatio 96.8 0.0043 9.3E-08 75.5 9.9 118 361-478 56-194 (790)
367 KOG3347 Predicted nucleotide k 96.8 0.00095 2.1E-08 65.6 3.5 32 366-397 8-39 (176)
368 PRK05800 cobU adenosylcobinami 96.8 0.0067 1.4E-07 61.1 9.7 92 367-465 3-114 (170)
369 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0048 1E-07 65.3 9.1 36 368-403 2-40 (249)
370 KOG2543 Origin recognition com 96.8 0.018 3.9E-07 64.3 13.6 160 332-515 6-192 (438)
371 PRK04301 radA DNA repair and r 96.8 0.0055 1.2E-07 67.4 9.8 117 361-479 98-251 (317)
372 PRK04841 transcriptional regul 96.8 0.014 3.1E-07 72.2 14.5 156 365-545 32-223 (903)
373 KOG0479 DNA replication licens 96.8 0.0087 1.9E-07 69.5 11.4 44 535-578 602-645 (818)
374 PRK06217 hypothetical protein; 96.8 0.0012 2.5E-08 66.7 4.1 31 367-397 3-33 (183)
375 PRK06696 uridine kinase; Valid 96.8 0.0018 4E-08 67.4 5.7 40 363-402 20-62 (223)
376 PRK08154 anaerobic benzoate ca 96.8 0.0041 8.9E-08 68.3 8.7 35 362-396 130-164 (309)
377 PRK13900 type IV secretion sys 96.8 0.0015 3.4E-08 72.4 5.4 72 363-434 158-245 (332)
378 cd01428 ADK Adenylate kinase ( 96.8 0.0011 2.5E-08 66.5 3.9 34 368-403 2-35 (194)
379 PRK13764 ATPase; Provisional 96.8 0.0019 4.1E-08 76.7 6.2 70 365-435 257-335 (602)
380 TIGR02238 recomb_DMC1 meiotic 96.8 0.0054 1.2E-07 67.6 9.4 115 361-477 92-242 (313)
381 TIGR02236 recomb_radA DNA repa 96.8 0.0073 1.6E-07 66.1 10.4 116 361-478 91-244 (310)
382 smart00534 MUTSac ATPase domai 96.8 0.0074 1.6E-07 61.2 9.7 19 368-386 2-20 (185)
383 PRK05703 flhF flagellar biosyn 96.8 0.0098 2.1E-07 68.3 11.8 38 364-401 220-262 (424)
384 TIGR02788 VirB11 P-type DNA tr 96.8 0.0019 4.2E-08 70.8 5.8 76 359-434 138-228 (308)
385 cd02021 GntK Gluconate kinase 96.8 0.0012 2.7E-08 63.8 3.8 28 368-395 2-29 (150)
386 PRK14530 adenylate kinase; Pro 96.7 0.0014 3.1E-08 67.8 4.4 35 367-403 5-39 (215)
387 COG2274 SunT ABC-type bacterio 96.7 0.0036 7.7E-08 76.0 8.4 69 411-502 614-682 (709)
388 PTZ00088 adenylate kinase 1; P 96.7 0.0015 3.3E-08 68.8 4.7 37 364-402 5-41 (229)
389 cd03246 ABCC_Protease_Secretio 96.7 0.0069 1.5E-07 60.5 9.2 105 363-482 26-157 (173)
390 PRK13894 conjugal transfer ATP 96.7 0.0019 4.1E-08 71.3 5.4 71 364-434 147-229 (319)
391 PHA02774 E1; Provisional 96.7 0.0083 1.8E-07 70.5 10.8 32 366-397 435-467 (613)
392 cd03223 ABCD_peroxisomal_ALDP 96.7 0.0071 1.5E-07 60.2 9.0 103 362-482 24-149 (166)
393 PRK13833 conjugal transfer pro 96.7 0.0021 4.5E-08 71.1 5.4 69 365-433 144-224 (323)
394 PRK13851 type IV secretion sys 96.7 0.0019 4.2E-08 72.0 5.2 73 362-434 159-246 (344)
395 TIGR03499 FlhF flagellar biosy 96.7 0.0049 1.1E-07 66.8 8.2 39 363-401 192-235 (282)
396 cd02027 APSK Adenosine 5'-phos 96.7 0.0053 1.1E-07 60.2 7.7 36 368-403 2-40 (149)
397 PLN03187 meiotic recombination 96.7 0.0051 1.1E-07 68.7 8.4 115 361-477 122-272 (344)
398 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0047 1E-07 66.4 7.9 93 329-434 57-159 (264)
399 cd03243 ABC_MutS_homologs The 96.7 0.0083 1.8E-07 61.5 9.3 22 366-387 30-51 (202)
400 PRK12339 2-phosphoglycerate ki 96.7 0.024 5.3E-07 58.4 12.7 29 365-393 3-31 (197)
401 PRK06547 hypothetical protein; 96.7 0.0019 4.1E-08 65.2 4.5 34 363-396 13-46 (172)
402 PF04665 Pox_A32: Poxvirus A32 96.7 0.022 4.7E-07 60.6 12.5 133 363-515 11-169 (241)
403 cd03222 ABC_RNaseL_inhibitor T 96.6 0.013 2.7E-07 59.5 10.4 105 363-481 23-132 (177)
404 PRK10416 signal recognition pa 96.6 0.014 3E-07 64.5 11.6 37 363-399 112-151 (318)
405 TIGR01313 therm_gnt_kin carboh 96.6 0.0015 3.2E-08 64.3 3.5 32 368-401 1-32 (163)
406 PRK05057 aroK shikimate kinase 96.6 0.0022 4.7E-08 64.4 4.8 34 365-398 4-37 (172)
407 PTZ00035 Rad51 protein; Provis 96.6 0.0079 1.7E-07 67.0 9.6 115 361-477 114-264 (337)
408 PRK03731 aroL shikimate kinase 96.6 0.0019 4.1E-08 64.0 4.3 31 366-396 3-33 (171)
409 COG0563 Adk Adenylate kinase a 96.6 0.0027 5.9E-08 64.4 5.4 34 367-402 2-35 (178)
410 PRK13695 putative NTPase; Prov 96.6 0.018 3.9E-07 57.4 11.2 23 367-389 2-24 (174)
411 TIGR02525 plasmid_TraJ plasmid 96.6 0.0041 8.9E-08 70.1 7.2 68 367-434 151-235 (372)
412 TIGR02655 circ_KaiC circadian 96.6 0.016 3.5E-07 67.6 12.2 40 361-400 17-60 (484)
413 PHA02530 pseT polynucleotide k 96.6 0.0059 1.3E-07 66.0 8.0 39 365-404 2-40 (300)
414 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.012 2.7E-07 60.2 9.8 21 366-386 29-49 (200)
415 PRK14527 adenylate kinase; Pro 96.5 0.002 4.4E-08 65.4 3.8 38 363-402 4-41 (191)
416 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0023 4.9E-08 63.9 4.0 34 367-402 5-38 (188)
417 PF05272 VirE: Virulence-assoc 96.5 0.007 1.5E-07 62.5 7.7 119 341-495 34-163 (198)
418 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.0053 1.1E-07 68.3 7.0 83 331-419 59-143 (358)
419 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0049 1.1E-07 63.1 6.3 43 363-405 13-56 (199)
420 COG1102 Cmk Cytidylate kinase 96.5 0.0021 4.6E-08 64.0 3.5 28 368-395 3-30 (179)
421 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0097 2.1E-07 59.4 8.3 105 363-482 24-156 (173)
422 PRK14528 adenylate kinase; Pro 96.5 0.0025 5.3E-08 64.8 4.1 35 366-402 2-36 (186)
423 COG1936 Predicted nucleotide k 96.5 0.0044 9.5E-08 62.4 5.6 33 367-402 2-34 (180)
424 PRK05541 adenylylsulfate kinas 96.5 0.0078 1.7E-07 60.1 7.5 41 363-403 5-48 (176)
425 PRK09302 circadian clock prote 96.5 0.024 5.3E-07 66.4 12.7 112 361-482 27-178 (509)
426 TIGR01526 nadR_NMN_Atrans nico 96.5 0.0061 1.3E-07 67.5 7.2 70 365-436 162-243 (325)
427 cd03115 SRP The signal recogni 96.4 0.019 4E-07 57.1 10.0 34 368-401 3-39 (173)
428 PRK04040 adenylate kinase; Pro 96.4 0.0028 6E-08 64.8 4.1 31 365-395 2-34 (188)
429 COG2805 PilT Tfp pilus assembl 96.4 0.015 3.1E-07 63.4 9.6 114 364-506 123-251 (353)
430 TIGR02239 recomb_RAD51 DNA rep 96.4 0.0093 2E-07 65.8 8.5 116 361-478 92-243 (316)
431 PF01745 IPT: Isopentenyl tran 96.4 0.0046 1E-07 64.3 5.6 96 367-478 3-99 (233)
432 PRK02496 adk adenylate kinase; 96.4 0.003 6.5E-08 63.5 4.2 30 367-396 3-32 (184)
433 KOG0058 Peptide exporter, ABC 96.4 0.011 2.4E-07 70.4 9.4 28 361-388 490-517 (716)
434 TIGR01351 adk adenylate kinase 96.4 0.0028 6E-08 65.4 3.9 33 368-402 2-34 (210)
435 PLN03186 DNA repair protein RA 96.4 0.011 2.3E-07 66.1 8.6 116 361-478 119-270 (342)
436 TIGR01425 SRP54_euk signal rec 96.4 0.026 5.7E-07 64.7 11.9 72 363-434 98-192 (429)
437 PF09848 DUF2075: Uncharacteri 96.4 0.0094 2E-07 66.5 8.2 23 367-389 3-25 (352)
438 cd03215 ABC_Carb_Monos_II This 96.4 0.011 2.4E-07 59.5 7.9 28 362-389 23-50 (182)
439 COG4088 Predicted nucleotide k 96.4 0.0062 1.3E-07 63.0 6.0 22 368-389 4-25 (261)
440 PRK13541 cytochrome c biogenes 96.4 0.035 7.5E-07 56.5 11.6 28 362-389 23-50 (195)
441 TIGR00767 rho transcription te 96.4 0.017 3.8E-07 65.5 10.1 26 365-390 168-193 (415)
442 cd03213 ABCG_EPDR ABCG transpo 96.4 0.018 3.8E-07 58.7 9.4 28 362-389 32-59 (194)
443 cd03232 ABC_PDR_domain2 The pl 96.3 0.028 6E-07 57.2 10.8 27 362-388 30-56 (192)
444 cd03227 ABC_Class2 ABC-type Cl 96.3 0.016 3.4E-07 57.5 8.6 22 365-386 21-42 (162)
445 COG4650 RtcR Sigma54-dependent 96.3 0.0026 5.6E-08 68.5 3.1 79 361-439 204-297 (531)
446 cd02019 NK Nucleoside/nucleoti 96.3 0.0082 1.8E-07 51.2 5.7 30 368-397 2-32 (69)
447 PRK00279 adk adenylate kinase; 96.3 0.0035 7.6E-08 64.9 4.0 34 368-403 3-36 (215)
448 PRK08099 bifunctional DNA-bind 96.3 0.0093 2E-07 67.9 7.7 40 364-403 218-257 (399)
449 cd03214 ABC_Iron-Siderophores_ 96.3 0.018 3.9E-07 57.8 8.9 107 362-482 22-159 (180)
450 PLN02674 adenylate kinase 96.3 0.0051 1.1E-07 65.5 5.1 40 363-404 29-68 (244)
451 cd01125 repA Hexameric Replica 96.3 0.018 4E-07 60.5 9.3 21 368-388 4-24 (239)
452 PF13481 AAA_25: AAA domain; P 96.3 0.0089 1.9E-07 60.1 6.7 73 367-439 34-156 (193)
453 PLN02199 shikimate kinase 96.3 0.021 4.6E-07 62.3 9.9 33 365-397 102-134 (303)
454 cd03229 ABC_Class3 This class 96.3 0.0093 2E-07 59.8 6.7 106 363-482 24-162 (178)
455 PRK11174 cysteine/glutathione 96.2 0.014 3E-07 69.3 9.1 29 361-389 372-400 (588)
456 COG2874 FlaH Predicted ATPases 96.2 0.029 6.3E-07 58.4 10.2 125 353-490 14-176 (235)
457 PRK13539 cytochrome c biogenes 96.2 0.042 9.1E-07 56.5 11.5 28 362-389 25-52 (207)
458 PRK01184 hypothetical protein; 96.2 0.0045 9.7E-08 62.2 4.1 29 367-396 3-31 (184)
459 PRK13808 adenylate kinase; Pro 96.2 0.019 4.1E-07 63.8 9.3 33 368-402 3-35 (333)
460 TIGR00064 ftsY signal recognit 96.2 0.092 2E-06 56.8 14.4 38 362-399 69-109 (272)
461 PRK04182 cytidylate kinase; Pr 96.2 0.0044 9.5E-08 61.3 4.0 29 367-395 2-30 (180)
462 COG2804 PulE Type II secretory 96.2 0.01 2.3E-07 68.4 7.2 92 327-435 233-338 (500)
463 PF00406 ADK: Adenylate kinase 96.2 0.0033 7.1E-08 61.3 2.8 35 370-406 1-35 (151)
464 smart00487 DEXDc DEAD-like hel 96.2 0.029 6.3E-07 54.7 9.5 33 366-398 25-62 (201)
465 PF13521 AAA_28: AAA domain; P 96.2 0.0043 9.4E-08 61.1 3.6 34 368-402 2-35 (163)
466 PF13238 AAA_18: AAA domain; P 96.1 0.0037 8E-08 58.0 2.9 22 368-389 1-22 (129)
467 PF12780 AAA_8: P-loop contain 96.1 0.024 5.3E-07 61.2 9.5 171 333-518 9-212 (268)
468 PRK14723 flhF flagellar biosyn 96.1 0.022 4.7E-07 69.4 9.9 26 364-389 184-209 (767)
469 PRK11176 lipid transporter ATP 96.1 0.021 4.4E-07 67.8 9.5 28 362-389 366-393 (582)
470 PF13245 AAA_19: Part of AAA d 96.1 0.0084 1.8E-07 52.5 4.6 32 367-398 12-50 (76)
471 TIGR02173 cyt_kin_arch cytidyl 96.1 0.0055 1.2E-07 60.2 3.9 29 368-396 3-31 (171)
472 PF13479 AAA_24: AAA domain 96.1 0.0093 2E-07 61.9 5.7 68 365-436 3-80 (213)
473 PRK09302 circadian clock prote 96.0 0.046 1E-06 64.0 12.0 107 361-478 269-406 (509)
474 COG5245 DYN1 Dynein, heavy cha 96.0 0.025 5.4E-07 71.4 9.8 179 362-555 1491-1716(3164)
475 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.029 6.4E-07 60.0 9.3 56 412-482 145-200 (254)
476 PRK00889 adenylylsulfate kinas 96.0 0.024 5.2E-07 56.5 8.2 40 364-403 3-45 (175)
477 PRK12608 transcription termina 96.0 0.034 7.3E-07 62.7 10.1 23 367-389 135-157 (380)
478 TIGR03375 type_I_sec_LssB type 96.0 0.02 4.3E-07 69.5 8.9 28 362-389 488-515 (694)
479 PRK12726 flagellar biosynthesi 96.0 0.026 5.7E-07 63.7 9.1 61 338-401 181-245 (407)
480 TIGR00152 dephospho-CoA kinase 96.0 0.042 9E-07 55.6 9.9 38 368-407 2-39 (188)
481 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.039 8.5E-07 57.1 9.8 23 365-387 29-51 (204)
482 TIGR00150 HI0065_YjeE ATPase, 96.0 0.01 2.2E-07 57.6 5.1 29 364-392 21-49 (133)
483 TIGR03797 NHPM_micro_ABC2 NHPM 96.0 0.021 4.5E-07 69.3 8.9 29 361-389 475-503 (686)
484 PF08423 Rad51: Rad51; InterP 95.9 0.019 4.1E-07 61.5 7.6 123 361-485 34-192 (256)
485 cd01878 HflX HflX subfamily. 95.9 0.11 2.3E-06 52.8 12.7 23 366-388 42-64 (204)
486 TIGR01448 recD_rel helicase, p 95.9 0.027 5.8E-07 68.8 9.7 97 366-480 339-454 (720)
487 cd03217 ABC_FeS_Assembly ABC-t 95.9 0.032 7E-07 57.0 8.9 27 362-388 23-49 (200)
488 TIGR02868 CydC thiol reductant 95.9 0.047 1E-06 64.0 11.4 28 362-389 358-385 (529)
489 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.044 9.5E-07 57.6 10.0 24 364-387 30-53 (222)
490 PRK08233 hypothetical protein; 95.9 0.009 2E-07 59.3 4.7 33 366-398 4-37 (182)
491 TIGR03796 NHPM_micro_ABC1 NHPM 95.9 0.018 3.9E-07 70.0 8.2 28 362-389 502-529 (710)
492 cd03218 ABC_YhbG The ABC trans 95.9 0.025 5.3E-07 58.9 8.1 28 362-389 23-50 (232)
493 PRK14737 gmk guanylate kinase; 95.9 0.015 3.3E-07 59.3 6.3 26 364-389 3-28 (186)
494 PRK13538 cytochrome c biogenes 95.9 0.049 1.1E-06 55.8 10.0 28 362-389 24-51 (204)
495 PF05970 PIF1: PIF1-like helic 95.9 0.039 8.4E-07 62.0 10.0 41 363-403 20-63 (364)
496 TIGR03819 heli_sec_ATPase heli 95.8 0.01 2.3E-07 66.1 5.3 70 365-434 178-263 (340)
497 PRK14526 adenylate kinase; Pro 95.8 0.0077 1.7E-07 62.8 3.9 35 367-403 2-36 (211)
498 TIGR01846 type_I_sec_HlyB type 95.8 0.028 6E-07 68.3 9.2 28 362-389 480-507 (694)
499 PLN02459 probable adenylate ki 95.8 0.0092 2E-07 64.1 4.5 36 366-403 30-65 (261)
500 PRK12727 flagellar biosynthesi 95.8 0.061 1.3E-06 63.1 11.3 27 363-389 348-374 (559)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-104 Score=904.76 Aligned_cols=564 Identities=48% Similarity=0.679 Sum_probs=481.4
Q ss_pred ceechHHHHHHHHcCCceEEEEeCc--EEEEEEecCCcccchhhhhhhchhhhhhhhccCCccceEEEecCCCCCcchHH
Q 003806 181 VSVPYSDFLSKINSNQVAKVEVDGV--HIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (794)
Q Consensus 181 ~~~~ys~f~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (794)
..++|++|+..+..++|++|.+++. .+.++.+++.. ...|.+....+.. ...
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~-------------------------~~~~~~~~~~~~~-~~~ 76 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSK-------------------------NTVYLPKGVNDPN-LVS 76 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcc-------------------------eEEeecCCcccHH-HHH
Confidence 4699999999999999999999874 45555554410 1223333333333 345
Q ss_pred HHHhCCceeccCCCCCcCcHHHHHHHHHHHHHHHHHHhhcccccccccCccccccCCCCCCCccccCCCCcccccccCCh
Q 003806 259 KMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVD 338 (794)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~d 338 (794)
.+..+++.+....+...+++...+.+++|+.++++++..+.....+..+......++++......+....++|+||+|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~d 156 (596)
T COG0465 77 FLDSNNITESGFIPEDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVD 156 (596)
T ss_pred HHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcH
Confidence 66677765544333444466666666666666555332221111221111112233343333344556889999999999
Q ss_pred HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHH
Q 003806 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFA 418 (794)
Q Consensus 339 evK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~ 418 (794)
++|+++.|+|+||++|.+|.++|++.|+|+||+||||||||+||||+|+|+++||+++|+|+|+++|+|.+++++|++|.
T Consensus 157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~ 236 (596)
T COG0465 157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236 (596)
T ss_pred HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEE
Q 003806 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (794)
Q Consensus 419 ~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I 498 (794)
+|++++||||||||||++++.|+.+ .++++++++|++||||.+||||..+.+|+|||+||+|+.|||||+|||||||+|
T Consensus 237 qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI 315 (596)
T COG0465 237 QAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQI 315 (596)
T ss_pred HhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceee
Confidence 9999999999999999999999766 568899999999999999999999999999999999999999999999999999
Q ss_pred EeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcc
Q 003806 499 MVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 578 (794)
.++.||..+|++|++.|++++ ++++++++..+|+.|+||+|+||+|++|+|++.|.|+++..|++.||.+|.+|+++|
T Consensus 316 ~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 316 LVELPDIKGREQILKVHAKNK--PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred ecCCcchhhHHHHHHHHhhcC--CCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 999999999999999999775 677999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCCCccccccHHHHHHHHHHhh
Q 003806 579 IEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLL 658 (794)
Q Consensus 579 ~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i~~~L 658 (794)
+++++..+++.+|+.+||||+|||+++ .++++.++|+|+||+|| |+++||++..|.+|++++++++++++|+++|
T Consensus 394 ~erks~vise~ek~~~AYhEaghalv~----~~l~~~d~v~KvtIiPr-G~alG~t~~~Pe~d~~l~sk~~l~~~i~~~l 468 (596)
T COG0465 394 PERKSRVISEAEKKITAYHEAGHALVG----LLLPDADPVHKVTIIPR-GRALGYTLFLPEEDKYLMSKEELLDRIDVLL 468 (596)
T ss_pred cCcCCcccChhhhcchHHHHHHHHHHH----HhCCCCcccceeeeccC-chhhcchhcCCccccccccHHHHHHHHHHHh
Confidence 999999999999999999999999997 57999999999999999 4899999999999999999999999999999
Q ss_pred hhHHHHHHHcCC-ccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 003806 659 GGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREV 737 (794)
Q Consensus 659 gGraAEel~f~~-~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~Ev 737 (794)
|||||||++| + ++||||+|||++||++|+.||++|||++.+|++.+...++..+........| +++++..||.||
T Consensus 469 gGRaAEel~~-g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~---Se~ta~~ID~ev 544 (596)
T COG0465 469 GGRAAEELIF-GYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNY---SEETAQEIDREV 544 (596)
T ss_pred CCcHhhhhhh-cccccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCc---cHHHHHHHHHHH
Confidence 9999999999 6 9999999999999999999999999999999999987543111000011223 456789999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHhhhh
Q 003806 738 KALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLSLSY 782 (794)
Q Consensus 738 ~~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~l~~ 782 (794)
++++++||++|++||.+|++.++.+++.|+|+||+ .+++..++..
T Consensus 545 k~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~ 590 (596)
T COG0465 545 KDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAG 590 (596)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhc
Confidence 99999999999999999999999999999999998 7777776654
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-103 Score=856.17 Aligned_cols=438 Identities=46% Similarity=0.693 Sum_probs=412.6
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
+...+++|+||-|+|++|++|+|+|+||++|++|.++|.+.|+||||+||||||||+||||+|+|+++|||++++++|-+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
+|+|++++++|++|..|++.+||||||||||+++.+|... ...+.++++||||.+||||..+.+||||+|||.|+.
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 9999999999999999999999999999999999998653 223889999999999999999999999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~I 563 (794)
||+||.||||||++|.|+.||..+|.+||+.|+.+ ++++.++|+..||+-|+||+|+||+|+||.|++.|+.++...|
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~V 529 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMV 529 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999976 5788999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcccchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCCCccc
Q 003806 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 643 (794)
Q Consensus 564 t~~d~~~Al~rvi~g~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~ 643 (794)
+|.|++.|-+|+++|.++++..++++.++++||||+|||+|+ .+..+..|++|+||.|| |.++|.+.+.|+.|++
T Consensus 530 tM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA----~yTk~A~PlhKaTImPR-G~sLG~t~~LPe~D~~ 604 (752)
T KOG0734|consen 530 TMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVA----LYTKGAMPLHKATIMPR-GPSLGHTSQLPEKDRY 604 (752)
T ss_pred cHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEE----eecCCCccccceeeccC-CccccceeecCccchh
Confidence 999999999999999999999999999999999999999997 46788999999999999 7899999999999999
Q ss_pred cccHHHHHHHHHHhhhhHHHHHHHcC-CccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCCCCCCCCCCCCCC
Q 003806 644 LLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW 722 (794)
Q Consensus 644 ~~~~~~l~~~i~~~LgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~ 722 (794)
.+||.+|++++.+|||||+|||++|| +.+|+||++||++||++|++||+.||||+++||+++....+. +
T Consensus 605 ~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~----------~ 674 (752)
T KOG0734|consen 605 SITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNS----------S 674 (752)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCC----------C
Confidence 99999999999999999999999997 689999999999999999999999999999999998653210 1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHhhhhh
Q 003806 723 GRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLSLSYL 783 (794)
Q Consensus 723 ~~~~~~~~~~id~Ev~~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~l~~~ 783 (794)
....++...||.||+++|+++|+||+.||+.|...|++||++|+|.||+ +++++.+|.-.
T Consensus 675 -s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 675 -SLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 1122456789999999999999999999999999999999999999999 88999888643
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-96 Score=850.59 Aligned_cols=449 Identities=52% Similarity=0.761 Sum_probs=417.5
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
+...+|+|+||+|++++|++|+|+|.||++|++|.++|+++|+|+||+||||||||+||||+|+|+|+||+.+++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 44566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
+++|.++.+++++|..|+.++||||||||||+++..|++....+.++++++++||||.+||||....+|||+|+||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999997545567899999999999999999999999999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~I 563 (794)
||+||+|||||||+|.+++|+..+|.+|++.|+++..+. .+++++..+|..|+||+|+||.|+||+|++.|.|++...|
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999887554 5778999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcccchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCCCccc
Q 003806 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 643 (794)
Q Consensus 564 t~~d~~~Al~rvi~g~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~ 643 (794)
+..||++|++|++.|++++...++.++++.+||||||||++++ ++++.+|+.|++|+| |+++||+++.|.++ +
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~----~l~~~dpl~kvsIiP--GqalG~a~~~P~~~-~ 614 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGW----LLEHADPLLKVSIIP--GQALGYAQYLPTDD-Y 614 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhc----cccccCcceeEEecc--CCccceEEECCccc-c
Confidence 9999999999999999999999999999999999999999984 679999999999999 45999999999877 8
Q ss_pred cccHHHHHHHHHHhhhhHHHHHHHcCCccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCCCCCCCCCCCCCCC
Q 003806 644 LLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWG 723 (794)
Q Consensus 644 ~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~~ 723 (794)
++++++|+++||++||||||||++||+++||||++||++||++|+.||+.|||++++|++++.....+ ...++.
T Consensus 615 l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~------~~~~~~ 688 (774)
T KOG0731|consen 615 LLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPG------DESFRK 688 (774)
T ss_pred cccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccc------cccccC
Confidence 99999999999999999999999997789999999999999999999999999999999999432211 112223
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHhhhhhhcc
Q 003806 724 RDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLSLSYLIML 786 (794)
Q Consensus 724 ~~~~~~~~~id~Ev~~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~l~~~~~~ 786 (794)
.....+++.||.||+++++.||++|.++|++|++.|+.||+.|+|||++ .+++..+|+...-.
T Consensus 689 p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~ 752 (774)
T KOG0731|consen 689 PYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPG 752 (774)
T ss_pred ccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCc
Confidence 3334567899999999999999999999999999999999999999999 88888888875443
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.7e-90 Score=808.52 Aligned_cols=582 Identities=39% Similarity=0.600 Sum_probs=476.7
Q ss_pred CccceechHHHHHHHHcCCceEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCccceEEEecCCCCCcchH
Q 003806 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPY 257 (794)
Q Consensus 178 ~~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 257 (794)
....+++||+|++++++|+|++|.+.++.+........... ......|.+..|......+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 106 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPEL--------------------GNRPQRIRVELPVGASELI 106 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccC--------------------CCcceeEEEeCCCCCHHHH
Confidence 34457999999999999999999998765543221110000 0001134454553223456
Q ss_pred HHHHhCCceeccCCCCCcCcHHHHH-HHHHHHHHHHHHHhhccccc--ccccCccccccCCCCCCCccccCCCCcccccc
Q 003806 258 EKMLENQVEFGSPDKRSGGFLNSAL-IALFYVAVLAGLLHRFPVSF--SQTAGQVGHRKTRGPGGAKVSEQGDTITFADV 334 (794)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV 334 (794)
..+.+++|++...+....+++...+ .+++|++++.+++..+.... ....++ ....+++..........+.++|+||
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~dv 185 (638)
T CHL00176 107 QKLKEANIDFDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQ-NLMNFGKSKARFQMEADTGITFRDI 185 (638)
T ss_pred HHHHHcCCcEEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccchhHHHhhcccCCCCCHHhc
Confidence 7888999999765544444444444 34456665554442221111 011111 0112222222222344567999999
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHH
Q 003806 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVR 414 (794)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr 414 (794)
+|++++|+++.++++++++++.|..+|.++|+|+||+||||||||++|+++|+++++||+.+++++|.+.+.|.+..+++
T Consensus 186 ~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr 265 (638)
T CHL00176 186 AGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVR 265 (638)
T ss_pred cChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCcc
Q 003806 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (794)
Q Consensus 415 ~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRF 494 (794)
++|..|+..+||||||||||.++..++.+. .+.+++..+++++||.+||++..+.+|+||++||+++.+|++++|||||
T Consensus 266 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~-~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRF 344 (638)
T CHL00176 266 DLFKKAKENSPCIVFIDEIDAVGRQRGAGI-GGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRF 344 (638)
T ss_pred HHHHHHhcCCCcEEEEecchhhhhcccCCC-CCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccC
Confidence 999999999999999999999998775432 3467888999999999999999889999999999999999999999999
Q ss_pred ceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 495 dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
|++|.+++|+.++|.+||+.|+++. ++.+++++..+|..|.|||++||+++|++|++.|.++++..|+++||.+|+++
T Consensus 345 d~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 345 DRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999874 45678899999999999999999999999999999999999999999999999
Q ss_pred HhcccchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCCCccccccHHHHHHHH
Q 003806 575 SIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRL 654 (794)
Q Consensus 575 vi~g~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i 654 (794)
++.|++++. ..++.+++++||||||||+|+ .++++.++|++|||+|| |+++||++..|.++++++++.+|+++|
T Consensus 423 v~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~----~~l~~~~~v~kvtI~pr-g~~~G~~~~~p~~~~~~~t~~~l~~~i 496 (638)
T CHL00176 423 VIAGLEGTP-LEDSKNKRLIAYHEVGHAIVG----TLLPNHDPVQKVTLIPR-GQAKGLTWFTPEEDQSLVSRSQILARI 496 (638)
T ss_pred HHhhhccCc-cccHHHHHHHHHHhhhhHHHH----hhccCCCceEEEEEeec-CCCCCceEecCCcccccccHHHHHHHH
Confidence 999998764 567788999999999999997 47888999999999999 579999999999999999999999999
Q ss_pred HHhhhhHHHHHHHcC-CccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCC-CC-CCC-CCCCCCCCCChhHHH
Q 003806 655 VTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSS-GG-IDE-SGGGVPWGRDQGQLV 730 (794)
Q Consensus 655 ~~~LgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~ 730 (794)
+++|||||||+++|| +++|+||++||++||++|+.||++||||+ +||+++..... .. +.. .+....| +++++
T Consensus 497 ~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~ 572 (638)
T CHL00176 497 VGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEY---SEEIA 572 (638)
T ss_pred HHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCc---CHHHH
Confidence 999999999999996 37999999999999999999999999995 99999865432 10 000 0001223 34667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHhhhhhhccccccccc
Q 003806 731 DLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLSLSYLIMLTSFDLWM 793 (794)
Q Consensus 731 ~~id~Ev~~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~l~~~~~~~~~~~~~ 793 (794)
..||.||+++|++||++|++||++||+.|++||++|+|+||| ++++..++......|+-+.|.
T Consensus 573 ~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~~~~~~~~~ 636 (638)
T CHL00176 573 DKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTILPPKKTWK 636 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCCCCCCcccc
Confidence 899999999999999999999999999999999999999999 999999997766677766664
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=8.3e-86 Score=774.76 Aligned_cols=562 Identities=43% Similarity=0.654 Sum_probs=473.5
Q ss_pred eechHHHHHHHHcCCceEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCccceEEEecCCCCCcchHHHHH
Q 003806 182 SVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKML 261 (794)
Q Consensus 182 ~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 261 (794)
.++|+.|.+.+.++.+.++.+....|.+..+++. .|.+..|.+....+..+.
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~----------------------------~~~~~~~~~~~~l~~~l~ 82 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSN----------------------------RYTTYIPVNDPKLLDNLL 82 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCc----------------------------eEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999998888877654431 244444432234567788
Q ss_pred hCCceeccCCCCCcCcHHHHHHHHHHHHHHHHHHhhcccccccccCccccccCCCCCCCccccCCCCcccccccCChHhH
Q 003806 262 ENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAK 341 (794)
Q Consensus 262 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~devK 341 (794)
++++.+...+.....++..++..+++++++++++..+...++.. +......+.........+.....+|+|+.|.+.++
T Consensus 83 ~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-~~~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~ 161 (644)
T PRK10733 83 TKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGG-GGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAK 161 (644)
T ss_pred HcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCceeEEeccccccccCchhhhCcHHHHcCHHHHH
Confidence 89998876554444555555555555555554443221111111 11011112222222233345578899999999999
Q ss_pred HHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHH
Q 003806 342 EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK 421 (794)
Q Consensus 342 ~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar 421 (794)
+++.+++++++++..|..++...|+|+||+||||||||++|+++|+++++||+.++++++.+.+.|.++..++++|..|+
T Consensus 162 ~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~ 241 (644)
T PRK10733 162 EEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK 241 (644)
T ss_pred HHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEee
Q 003806 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVE 501 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~ 501 (794)
..+||||||||+|+++..++... .+.+++.++++|++|.+||++..+.+++||+|||+|+.||++++||||||++|.++
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~-~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~ 320 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 320 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCC-CCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcC
Confidence 99999999999999998876532 34567889999999999999999999999999999999999999999999999999
Q ss_pred cCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcccch
Q 003806 502 TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEK 581 (794)
Q Consensus 502 ~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~e~ 581 (794)
.|+.++|.+||+.|+++. ++..++++..+|+.|.||||+||.++|++|+..|.++++..|++.||++|++++..|+++
T Consensus 321 ~Pd~~~R~~Il~~~~~~~--~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 321 LPDVRGREQILKVHMRRV--PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhccccc
Confidence 999999999999999764 667889999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCCCccccccHHHHHHHHHHhhhhH
Q 003806 582 KTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGR 661 (794)
Q Consensus 582 k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i~~~LgGr 661 (794)
+...+++++++.+||||+|||+|+ +++++.+++++|+|+|| |.++||+++.|.++++..++.+|+++|+++||||
T Consensus 399 ~~~~~~~~~~~~~a~he~gha~~~----~~~~~~~~~~~v~i~pr-g~~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgGr 473 (644)
T PRK10733 399 RSMVMTEAQKESTAYHEAGHAIIG----RLVPEHDPVHKVTIIPR-GRALGVTFFLPEGDAISASRQKLESQISTLYGGR 473 (644)
T ss_pred ccccccHHHHHHHHHHHHHHHHHH----HHccCCCceeEEEEecc-CCCcceeEECCCcccccccHHHHHHHHHHHHhhH
Confidence 888888999999999999999997 47888899999999999 5699999999988888899999999999999999
Q ss_pred HHHHHHcC-CccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCCCC-CCCC-CCCCCCCCChhHHHHHHHHHHH
Q 003806 662 AAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGG-IDES-GGGVPWGRDQGQLVDLVQREVK 738 (794)
Q Consensus 662 aAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~id~Ev~ 738 (794)
|||+++|| +++||||+|||++||+||+.||++||||+++|++.+....... +... .....++ ++++..||.||+
T Consensus 474 aAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s---~~~~~~id~ev~ 550 (644)
T PRK10733 474 LAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMS---DETARIIDQEVK 550 (644)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccC---HHHHHHHHHHHH
Confidence 99999996 4799999999999999999999999999999999986533211 1000 0012233 456789999999
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHhhhhh
Q 003806 739 ALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLSLSYL 783 (794)
Q Consensus 739 ~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~l~~~ 783 (794)
++|++||++|++||++||+.|++||++|+|+||| ++++..+|...
T Consensus 551 ~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~ 596 (644)
T PRK10733 551 ALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596 (644)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999 89999998753
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.5e-78 Score=695.74 Aligned_cols=449 Identities=52% Similarity=0.779 Sum_probs=406.5
Q ss_pred ccccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 321 ~~~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
...++.+.++|+||+|++++|+++.++++++++++.|...|.++|+|+||+||||||||++|+++|+++++||+.+++++
T Consensus 44 ~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred cccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+.+.+.|.+...++++|+.|+..+||||||||||.++..++... ...+++..+++++||.+||++..+.+++||+|||+
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~-~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL-GGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCc-CCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999998876532 23467788999999999999998899999999999
Q ss_pred CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCC
Q 003806 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (794)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~ 560 (794)
|+.|||+++||||||+.|+++.|+.++|.+|++.++.+. ++..++++..+|..|.|||++||.++|++|+..|.++++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~ 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999764 445678899999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcccchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCCC
Q 003806 561 VVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANE 640 (794)
Q Consensus 561 ~~It~~d~~~Al~rvi~g~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~ 640 (794)
..|+.+||..|++++..|++++...+++++++.+||||+|||+|+ ++++...++++++|.|| +.++||++..|.+
T Consensus 281 ~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~----~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~ 355 (495)
T TIGR01241 281 TEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVG----LLLKDADPVHKVTIIPR-GQALGYTQFLPEE 355 (495)
T ss_pred CCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHH----HhcCCCCceEEEEEeec-CCccceEEecCcc
Confidence 999999999999999999888878889999999999999999996 46777789999999999 5699999888877
Q ss_pred ccccccHHHHHHHHHHhhhhHHHHHHHcCCccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCCCCC-CC-CCC
Q 003806 641 DRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGI-DE-SGG 718 (794)
Q Consensus 641 ~~~~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~-~~-~~~ 718 (794)
+....++.+++++|+++|||||||+++| |++|+|+++||++||++|+.||.+|||++.+|++++.......+ .. ...
T Consensus 356 ~~~~~t~~~l~~~i~v~LaGraAE~~~~-G~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~ 434 (495)
T TIGR01241 356 DKYLYTKSQLLAQIAVLLGGRAAEEIIF-GEVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAK 434 (495)
T ss_pred ccccCCHHHHHHHHHHHhhHHHHHHHHh-cCCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCcccccccccccc
Confidence 7889999999999999999999999999 68999999999999999999999999999999999875322111 00 001
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHhhh
Q 003806 719 GVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLSLS 781 (794)
Q Consensus 719 ~~~~~~~~~~~~~~id~Ev~~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~l~ 781 (794)
..+++ ..+...+|.||+++|++||++|++||++|++.|++||++|+++|+| ++++..||+
T Consensus 435 ~~~~s---~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 435 AKEYS---EETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred ccccC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 12333 3456789999999999999999999999999999999999999999 888888764
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-57 Score=482.00 Aligned_cols=254 Identities=47% Similarity=0.765 Sum_probs=243.5
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
.++.|.+||+||.|+++.+++|+|.|+. |++|+.|.++|+.||+|||||||||||||+||||+|++.++.|+.+.+|+|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 3567899999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
+.+|.|+++..+|++|+.|+.++||||||||||+++.+|-.. ..+++.|..+++-+||++||||++..+|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~-~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS-GTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccC-CCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 999999999999999999999999999999999999998654 3467889999999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCc
Q 003806 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (794)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~ 561 (794)
+.|||||+|||||||.|+|++||.++|.+||+.|.++ ..+.+++|++.+|+.|+|+|||||+++|.+|.+.|.|+.+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk--M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK--MNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh--ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999999999999999999977 46789999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhccc
Q 003806 562 VVEKIDFIHAVERSIAGI 579 (794)
Q Consensus 562 ~It~~d~~~Al~rvi~g~ 579 (794)
.|+++||.+|.++++...
T Consensus 379 ~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred eecHHHHHHHHHHHHhcc
Confidence 999999999999998653
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=2.4e-56 Score=544.20 Aligned_cols=319 Identities=20% Similarity=0.275 Sum_probs=274.3
Q ss_pred hHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh-----------------------------
Q 003806 355 DKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY----------------------------- 405 (794)
Q Consensus 355 ~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~----------------------------- 405 (794)
..+.++|+++|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 345788999999999999999999999999999999999999999998643
Q ss_pred --------------hccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC---C
Q 003806 406 --------------VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---S 468 (794)
Q Consensus 406 --------------vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---~ 468 (794)
++.+..+++++|+.|++++||||||||||+++... ....++++|+++||+.. .
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCC
Confidence 12233458999999999999999999999997542 22356899999999874 4
Q ss_pred CCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccc-cchhHHhhhcCCCCHHHHHHH
Q 003806 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDIASMTTGFTGADLANL 547 (794)
Q Consensus 469 ~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vdl~~LA~~t~GfSgaDL~~L 547 (794)
..+|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..++..+++++.++ ++++.+|+.|+|||||||+++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 5789999999999999999999999999999999999999999987665556666644 689999999999999999999
Q ss_pred HHHHHHHHHhhCCccccHHHHHHHHHHHhcccchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeec--
Q 003806 548 VNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILP-- 625 (794)
Q Consensus 548 v~eAal~A~r~~~~~It~~d~~~Al~rvi~g~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~p-- 625 (794)
|+||+..|.++++..|+++++..|++|+++|++.+. .+..+++ +|+||+|||||+ .++++.+|+++|||++
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~--~~~~~~~-ia~yEiGhAvvq----~~L~~~~pv~kISIy~~~ 1922 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQV--RSVQDHG-ILFYQIGRAVAQ----NVLLSNCPIDPISIYMKK 1922 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcc--cCcchhh-hhhhHHhHHHHH----HhccCCCCcceEEEecCC
Confidence 999999999999999999999999999999987653 2333443 799999999997 4788899999999964
Q ss_pred ---CCccccceEeecCCCccccccHHHHHHHHHHhhhhHHHHHHHcCCccccchhhHHHHHHHHHHHHHHHhCCCCC---
Q 003806 626 ---RTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRT--- 699 (794)
Q Consensus 626 ---r~g~alG~~~~~~~~~~~~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~--- 699 (794)
|++.+.||+|+.|.+ +++++.+++.+|++||||||||+++|. ..+ .|+.||+.|||.+.
T Consensus 1923 ~~~r~~~~yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~-~~~------------~~~n~It~yg~vEnD~~ 1987 (2281)
T CHL00206 1923 KSCKEGDSYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSL-PGP------------DEKNGITSYGLVENDSD 1987 (2281)
T ss_pred ccccCcccceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccC-cch------------hhhcCcccccchhhhhH
Confidence 346678999998755 699999999999999999999999993 222 57899999999988
Q ss_pred --CCccee
Q 003806 700 --IGPVSI 705 (794)
Q Consensus 700 --lg~~~~ 705 (794)
.|++.+
T Consensus 1988 La~glLe~ 1995 (2281)
T CHL00206 1988 LVHGLLEV 1995 (2281)
T ss_pred HhHhHHHh
Confidence 566554
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-53 Score=475.85 Aligned_cols=324 Identities=38% Similarity=0.640 Sum_probs=280.3
Q ss_pred EEEecCCCCCcchHHH-HHhCCceeccCCC---------------------------CCcCcHHHHHHHHHHHHHHHHHH
Q 003806 244 VYTTTRPSDIKTPYEK-MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLAGLL 295 (794)
Q Consensus 244 ~~~t~~~~~~~~~~~~-~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~ 295 (794)
+.+|++|..++..+++ ..++.|+++.|.. .++||++.+|..+|..+.+....
T Consensus 324 l~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r 403 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATR 403 (693)
T ss_pred EEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhh
Confidence 4567788877665553 5677788877763 26899999999999888877765
Q ss_pred hhcccccccccCccccccCCCCCCCccccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCC
Q 003806 296 HRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLP 374 (794)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPP 374 (794)
+.+ ..+....++ ...+.......+.|+++|+||.|++++|++|++.|.+ +++|+.|.++|+.+|+||||||||
T Consensus 404 ~~~-~~~~~A~~~-----i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPP 477 (693)
T KOG0730|consen 404 RTL-EIFQEALMG-----IRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPP 477 (693)
T ss_pred hhH-HHHHHHHhc-----CCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCC
Confidence 411 111111111 1122223344678999999999999999999999998 999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHH
Q 003806 375 GTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (794)
Q Consensus 375 GTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (794)
|||||++|||+|++++++|+++++.++.++|+|++++.++++|.+|+..+|||||+||||+++..|++.. +....+
T Consensus 478 GC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~----~~v~~R 553 (693)
T KOG0730|consen 478 GCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS----SGVTDR 553 (693)
T ss_pred CcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc----cchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997542 266789
Q ss_pred HHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhh
Q 003806 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (794)
Q Consensus 455 ~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~ 534 (794)
++++||++|||+....+|+||||||+|+.||+||+||||||+.|+|++||.+.|.+||+.++++ .++.+++|++.||.
T Consensus 554 VlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 554 VLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQ 631 (693)
T ss_pred HHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976 58889999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhC--CccccHHHHHHHHHHHhccc
Q 003806 535 MTTGFTGADLANLVNEAALLAGRLN--KVVVEKIDFIHAVERSIAGI 579 (794)
Q Consensus 535 ~t~GfSgaDL~~Lv~eAal~A~r~~--~~~It~~d~~~Al~rvi~g~ 579 (794)
.|.|||||||.++|++|++.|.+++ ...|+..||++|+..+...+
T Consensus 632 ~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 632 ATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccC
Confidence 9999999999999999999999875 46789999999998765443
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-51 Score=455.93 Aligned_cols=253 Identities=43% Similarity=0.682 Sum_probs=234.2
Q ss_pred CCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
.-|+|+|+||.|+++++.+|...|.+ .++|+.|.++|+..|.|||||||||||||+||||+|+|+|.+|+++.+.++.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 34899999999999999999987766 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
+|+|+++..||.+|..|+..+|||||+||+|+|.+.|+.. ......+++||||++|||...+.+|.||||||+||.
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~----~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE----GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC----CchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 9999999999999999999999999999999999999764 355568999999999999999999999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcC--CCCHHHHHHHHHHHHHHHHhhC--
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLAGRLN-- 559 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~--GfSgaDL~~Lv~eAal~A~r~~-- 559 (794)
+|||++||||||+.++|++|+.++|.+||+.+.++...++.+|+|+++||+.+. ||||+||..||++|.+.|.++.
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999977788999999999998876 9999999999999999998741
Q ss_pred --------------CccccHHHHHHHHHHHhcccch
Q 003806 560 --------------KVVVEKIDFIHAVERSIAGIEK 581 (794)
Q Consensus 560 --------------~~~It~~d~~~Al~rvi~g~e~ 581 (794)
...+++.||++|+.++.....+
T Consensus 740 ~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~ 775 (802)
T KOG0733|consen 740 EIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSE 775 (802)
T ss_pred hccccCcccceeeeeeeecHHHHHHHHHhcCCCccH
Confidence 1246778999999887655443
No 11
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-45 Score=374.79 Aligned_cols=258 Identities=41% Similarity=0.676 Sum_probs=243.6
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
.++.|.+|+.||.|+.+..+.|+|+|+. +.+|++|..+|+.||+|||||||||||||++|+|+|+..+.-|+.+-+|++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 3678999999999999999999999998 889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
+.+|+|+++..+|++|+.|+....||||+||||++++.|-... .+++.+..+++-.|++++|||+++.++-|+.+||+|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg-~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDG-AGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCC-CCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 9999999999999999999999999999999999998885442 356788899999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCc
Q 003806 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (794)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~ 561 (794)
+.|||||+||||+||.++|.+||.+.|..|++.|.+. .....++-++.+|+.++.-+|++|+.+|.+|.+.|.+..++
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999865 46678899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcccchhh
Q 003806 562 VVEKIDFIHAVERSIAGIEKKT 583 (794)
Q Consensus 562 ~It~~d~~~Al~rvi~g~e~k~ 583 (794)
..|..||.+|+++++.|..+-+
T Consensus 405 ~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998876543
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-44 Score=401.04 Aligned_cols=227 Identities=45% Similarity=0.764 Sum_probs=215.0
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~ 405 (794)
.++++|.|+.|++....+|.+++..+++|+.|..+|..||+||||+||||||||+||+|+|+++++||+.+++.++++.+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCC----CcEEEEEEcCCC
Q 003806 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGATNRS 481 (794)
Q Consensus 406 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~----~~VIVIaATN~p 481 (794)
.|++++++|++|++|+..+|||+||||||+++++|.. +..+..++++.|||+.||+.... .+|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999874 45566788999999999988654 679999999999
Q ss_pred CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++ +.++.++|+..||+.|+||.|+||..||.+|+..|.++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~--lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRG--LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhh--CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999975 56778999999999999999999999999999999875
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-43 Score=361.92 Aligned_cols=251 Identities=44% Similarity=0.700 Sum_probs=236.9
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+.|.+++.|+.|++-.|++++|.++. |.+.+.|...|+.||+|||||||||||||+||||+|++....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 457899999999999999999999998 8888999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
.+|.|++...+|++|..|+.++|+||||||||++..+|-.. ..+.+.+..+.+-.||++||||+...+|-||.+||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfda-qtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA-QTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccc-cccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 99999999999999999999999999999999999887543 24667888999999999999999999999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (794)
.|||||+||||+||.|++++||..++.-++.....+. .+.+++|++.+..+....|++||..+|++|.+.|.|+++-.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm--~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryv 383 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM--NLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYV 383 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc--cCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhccee
Confidence 9999999999999999999999999999999888764 57899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 003806 563 VEKIDFIHAVERSIA 577 (794)
Q Consensus 563 It~~d~~~Al~rvi~ 577 (794)
|...||++|...++.
T Consensus 384 vl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 384 VLQKDFEKAYKTVVK 398 (408)
T ss_pred eeHHHHHHHHHhhcC
Confidence 999999999987653
No 14
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-43 Score=400.71 Aligned_cols=250 Identities=40% Similarity=0.650 Sum_probs=224.0
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
+.-|+|+|+||.|++++|.++.+.++. |++|+.|. .|.++-.|||||||||||||++|||+|.|+...|+++.+.++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 456899999999999999999999988 88888764 5788888999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--CCCcEEEEEEcCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGATNR 480 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~~~~VIVIaATN~ 480 (794)
+||+|++++++|++|++||..+|||||+||+|.+++.|+... -+..-..+++.|||.||||+. +...|+||+||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG--DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG--DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC--CccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 999999999999999999999999999999999999997653 344567899999999999998 5678999999999
Q ss_pred CCCCCccccCCCccceEEEeecCC-HHhHHHHHHHHHhcCCCCCccccchhHHhhhc-CCCCHHHHHHHHHHHHHHHHhh
Q 003806 481 SDVLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDLGDIASMT-TGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd-~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t-~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
||.|||||+||||||+.+++.+++ .+.+..+|+...++ +++++++|+.++|+.+ +.|||||+..+|..|.+.|.++
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 56667888888766 5789999999999998 4799999999999999999875
Q ss_pred C-----------------CccccHHHHHHHHHHHhcc
Q 003806 559 N-----------------KVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 559 ~-----------------~~~It~~d~~~Al~rvi~g 578 (794)
. .-.|+++||.+|+++....
T Consensus 899 ~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 899 TIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred HHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 1 2358899999999876543
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-43 Score=359.41 Aligned_cols=250 Identities=41% Similarity=0.661 Sum_probs=238.1
Q ss_pred CCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
.-|..+++-+.|++...++++|+++. .++|+.|..+|+..|+|+|||||||||||+||+++|.+..+.|+.+++++++.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 34778899999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
+|.|++...+|++|-.|+.++|+|||.||||.++..|..+. .+++.+..+++-.||+++|||+...++-||.|||+.+.
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999887653 45788899999999999999999999999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~I 563 (794)
|||||+||||+||.|+||+|+.+.|.+||+.|-++- .+...+++..+|....|.||+++..+|.+|.+.|.|+.+..+
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhv 376 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHV 376 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccc
Confidence 999999999999999999999999999999999875 457889999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhc
Q 003806 564 EKIDFIHAVERSIA 577 (794)
Q Consensus 564 t~~d~~~Al~rvi~ 577 (794)
|++||+-|+.+++.
T Consensus 377 tqedfemav~kvm~ 390 (404)
T KOG0728|consen 377 TQEDFEMAVAKVMQ 390 (404)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999999875
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-43 Score=360.77 Aligned_cols=251 Identities=38% Similarity=0.648 Sum_probs=236.1
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+.|+-+++|+.|++...++|.|.+-. +.++++|..+|++||+|+|+|||||||||++|||.|...+..|..+.+.+++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 566888999999999999998876655 8899999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
.+|.|.+++.+|+.|..|+..+||||||||+|+++.+|-.+. ..++.+..+++-.||+++|||.++..|-|||+||+.+
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 999999999999999999999999999999999999886542 3567788999999999999999999999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (794)
.|||||+|+||+||.|+||.|+.+.|..|++.|.++. .+.+|++++++|+-|.+|+|+++..+|-+|.+.|.|++...
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~ate 399 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATE 399 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccc
Confidence 9999999999999999999999999999999999874 56799999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 003806 563 VEKIDFIHAVERSIA 577 (794)
Q Consensus 563 It~~d~~~Al~rvi~ 577 (794)
|+.+||.+++..+..
T Consensus 400 v~heDfmegI~eVqa 414 (424)
T KOG0652|consen 400 VTHEDFMEGILEVQA 414 (424)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999977654
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-43 Score=365.66 Aligned_cols=252 Identities=41% Similarity=0.684 Sum_probs=238.8
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
+..|.-+|+|+.|++...++++|.++. |.+|+.|..+|++||+||+|||+||||||+||+|+|+.....|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 456788999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
..|.|.+++.+|++|..|..++|+|+||||||+++.+|-+. ..++..+..+++-.||+++|||+++..|-||.|||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds-~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS-NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccC-CCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 99999999999999999999999999999999999888543 24667888899999999999999999999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (794)
.|||||+||||+||.|.|+.||...+..|+..|..+ ..+..+++++.+...-..+||+||..+|.+|.++|.|+.+..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMK 413 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999876 467899999999998899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 003806 563 VEKIDFIHAVERSIAG 578 (794)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (794)
++++||..|.++++..
T Consensus 414 vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 414 VTMEDFKKAKEKVLYK 429 (440)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999998754
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=356.62 Aligned_cols=241 Identities=39% Similarity=0.617 Sum_probs=221.7
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
+..++++|+||+|++++|+..+-++.+|.+|++|.. =.|++||+|||||||||++|||+|+++++||+.+.+.+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 455789999999999999999999999999999754 45899999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
.|+|.++.+++++|+.|++.+|||+||||+|+++-+|.-. ..-......+|.||++|||...+.+|+.|||||+|+.
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ---elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ---ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH---HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 9999999999999999999999999999999998766421 1223456789999999999999999999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHH-HHHHHHHHHHHhhCCcc
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA-NLVNEAALLAGRLNKVV 562 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~-~Lv~eAal~A~r~~~~~ 562 (794)
||+|+++ ||...|+|.+|+.++|.+|++.++.+. |+.-+.+++.++..|.||||+||. .+++.|...|..+++..
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~ 342 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREK 342 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhh
Confidence 9999998 999999999999999999999999764 666677899999999999999996 67888999999999999
Q ss_pred ccHHHHHHHHHH
Q 003806 563 VEKIDFIHAVER 574 (794)
Q Consensus 563 It~~d~~~Al~r 574 (794)
|+.+|++.|+.+
T Consensus 343 v~~edie~al~k 354 (368)
T COG1223 343 VEREDIEKALKK 354 (368)
T ss_pred hhHHHHHHHHHh
Confidence 999999999987
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-42 Score=365.76 Aligned_cols=246 Identities=38% Similarity=0.593 Sum_probs=221.4
Q ss_pred CCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
..|.++|+||+|++++|+-|+|.|-. +.-|+ |.+-..+|.+|||++||||||||+||||+|.|++..||.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe-~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPE-FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHH-HHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 45789999999999999999998877 55555 44556678899999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCC-Cc---EEEEEEcC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SA---VIVLGATN 479 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~-~~---VIVIaATN 479 (794)
+|-|++++.||-+|+.|+.++|++|||||||+|+..|++. ..++..+++-+.||.+|||.... .+ |+|+||||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 9999999999999999999999999999999999999864 56778889999999999998653 23 89999999
Q ss_pred CCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC
Q 003806 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (794)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~ 559 (794)
.|+.||.||+| ||.+.|+|++|+.++|.++++..++. .++.++++++.||+.++||||+||.++|++|.+.+.|+.
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999975 578899999999999999999999999999999998741
Q ss_pred -----------------CccccHHHHHHHHHHHhcc
Q 003806 560 -----------------KVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 560 -----------------~~~It~~d~~~Al~rvi~g 578 (794)
+..|++.||+.|+.++-..
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 1347889999999886543
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=374.61 Aligned_cols=252 Identities=42% Similarity=0.671 Sum_probs=233.8
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
++.|.++|+||+|++.+|++|++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456889999999999999999999875 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
..|.|.+...++++|..|+..+||||||||+|.++..+.+.. .+.+.+..+.+.+++..||++....+++||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999987764321 2334566788999999999998888999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (794)
.|||+++||||||+.|+++.|+.++|.+|++.++.+. .+..++++..++..|+||||+||.++|++|.+.|.++++..
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~--~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM--NLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999764 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 003806 563 VEKIDFIHAVERSIAG 578 (794)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (794)
|+++||.+|+++++.+
T Consensus 374 i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998765
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.1e-39 Score=364.16 Aligned_cols=254 Identities=47% Similarity=0.760 Sum_probs=234.2
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+.|.++|+||+|+++++++|.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|.+++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 455789999999999999999999877 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
..|.|.++..++.+|..|+..+||||||||+|.++..+.+.. ...+.+..+++.+++.+++++....+++||+|||+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987775432 2234567788999999999998888999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (794)
.+|++++||||||+.|.|++|+.++|.+||+.++.+. ++..++++..+|..|.||+|+||+++|++|+..|.+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~--~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM--NLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999764 55677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcccc
Q 003806 563 VEKIDFIHAVERSIAGIE 580 (794)
Q Consensus 563 It~~d~~~Al~rvi~g~e 580 (794)
|+.+||.+|++++..+..
T Consensus 360 i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred cCHHHHHHHHHHHhcccc
Confidence 999999999999876544
No 22
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-39 Score=371.10 Aligned_cols=250 Identities=49% Similarity=0.772 Sum_probs=233.5
Q ss_pred cccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
+....+.++|+|+.|++++|+.+++.+.+ ++.++.|...+.++|+|+|||||||||||+||+++|.+++.+|+.+.+++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 44567899999999999999999999998 78889999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+.++|+|.+++.++++|..|+..+||||||||+|++...++.. .+....++++++|.+|++.+...+|+||+|||+
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~----~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS----EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC----CchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 9999999999999999999999999999999999999988643 222236899999999999999999999999999
Q ss_pred CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC-
Q 003806 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN- 559 (794)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~- 559 (794)
|+.+|+|++||||||+.++|++||..+|.+|++.|+......+..++++..+++.|.||+|+||..+|++|+..+.++.
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998766556789999999999999999999999999999999988
Q ss_pred CccccHHHHHHHHHHH
Q 003806 560 KVVVEKIDFIHAVERS 575 (794)
Q Consensus 560 ~~~It~~d~~~Al~rv 575 (794)
...|+++||..|+.+.
T Consensus 468 ~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 468 RREVTLDDFLDALKKI 483 (494)
T ss_pred cCCccHHHHHHHHHhc
Confidence 7889999999999873
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=363.23 Aligned_cols=251 Identities=42% Similarity=0.686 Sum_probs=232.8
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
+..|.++|+||.|+++.+++|.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345789999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
..|.|.++..++++|..|+...||||||||||+++.++.... .++..+..+++.++|.+||++....++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-SGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-CcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 999999999999999999999999999999999997765332 2345566788899999999998888999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (794)
.||++++||||||+.|+|+.|+.++|.+||+.++.+. .+..+++++.++..+.|||++||.++|++|+..|.++++..
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~--~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~ 411 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM--TLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMK 411 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC--CCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999998764 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 003806 563 VEKIDFIHAVERSIA 577 (794)
Q Consensus 563 It~~d~~~Al~rvi~ 577 (794)
|+++||..|+++++.
T Consensus 412 Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 412 VTQADFRKAKEKVLY 426 (438)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999999864
No 24
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=4.7e-40 Score=339.03 Aligned_cols=211 Identities=36% Similarity=0.470 Sum_probs=169.9
Q ss_pred cHHHHHHHHHHHhcccchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCCCccc
Q 003806 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 643 (794)
Q Consensus 564 t~~d~~~Al~rvi~g~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~ 643 (794)
|++||++|+++++.|++++...+++++++++||||||||||+ +++++.++|+++||+||+. ++||+.+.|.++++
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva----~~l~~~~~v~~vsi~prg~-~~G~~~~~~~~~~~ 75 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVA----YLLPPADPVSKVSIVPRGS-ALGFTQFTPDEDRY 75 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHH----HHSSS---EEEEESSTTCC-CCHCCEECHHTT-S
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHH----HHhcccccEEEEEEecCCC-cceeEEeccchhcc
Confidence 689999999999999998888899999999999999999996 4678888999999999954 99999998888888
Q ss_pred cccHHHHHHHHHHhhhhHHHHHHHcC-CccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCCCCCCCCCCCCCC
Q 003806 644 LLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW 722 (794)
Q Consensus 644 ~~~~~~l~~~i~~~LgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~ 722 (794)
..|+++++++|+++|||||||+++|| +++|+|+++||++||.||+.||.+||||+++|++++................+
T Consensus 76 ~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~ 155 (213)
T PF01434_consen 76 IRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSR 155 (213)
T ss_dssp S-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EE
T ss_pred cccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeecccccccccccccccc
Confidence 89999999999999999999999995 48999999999999999999999999999999998876443110000000001
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHh
Q 003806 723 GRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLS 779 (794)
Q Consensus 723 ~~~~~~~~~~id~Ev~~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~ 779 (794)
......+.+.+|+||+++|++||++|++||++||+.|++||++|+|+|+| ++++..|
T Consensus 156 ~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 156 RPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 12234567899999999999999999999999999999999999999998 7777654
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-39 Score=362.50 Aligned_cols=225 Identities=41% Similarity=0.650 Sum_probs=212.6
Q ss_pred CcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhh
Q 003806 328 TITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~v 406 (794)
.++|+||.|+.++|+.|++++.+ -+.|..|...+.+.+.|||||||||||||+||-++|...++.|+++.+.++.++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 49999999999999999999999 78899999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCc
Q 003806 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (794)
Q Consensus 407 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDp 486 (794)
|.++..+|++|.+|+..+|||+|+||+|.++++|+... .....+++||||++|||.+.-.||.|+|||.|||.|||
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs----TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS----TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC----CCchHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 99999999999999999999999999999999998653 33456899999999999999999999999999999999
Q ss_pred cccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 487 ALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
||+||||+|+.++.+.|+..+|.+|++...... .++.++|++.+|..|+|||||||..++-.|.+.|.++
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~--~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL--LKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc--CCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998654 5678999999999999999999999999999888754
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-38 Score=379.68 Aligned_cols=250 Identities=46% Similarity=0.803 Sum_probs=228.8
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+.|.++|+||+|++++|++|++.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 345789999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
++|+|.++..++.+|..|+...||||||||||++++.++... ......+.+++||.+||++....+++||+|||+|+
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 999999999999999999999999999999999998876432 23345789999999999998888999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC---
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 559 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~--- 559 (794)
.||++++||||||+.|++++|+.++|.+||+.+.++ .++.++++++.+|+.|.||||+||.++|++|+..|.++.
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~ 679 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGS 679 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999865 467788999999999999999999999999999988742
Q ss_pred ---------------CccccHHHHHHHHHHHhcc
Q 003806 560 ---------------KVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 560 ---------------~~~It~~d~~~Al~rvi~g 578 (794)
...|+++||.+|+.++...
T Consensus 680 ~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 680 PAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred ccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 1268999999999876544
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9e-38 Score=355.96 Aligned_cols=244 Identities=27% Similarity=0.444 Sum_probs=215.2
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~ 405 (794)
.+.++|+||.|++.+|++|.+....+ +..+...|.++|+|+|||||||||||++|+++|++++.||+.++++.+.+.|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35789999999999999999866543 2345678999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 003806 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (794)
Q Consensus 406 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (794)
+|.++.+++++|..|+..+||||||||||.++..++.. +......+++++++..|+. .+.+|+||||||+++.||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999987654321 2344567889999999984 356899999999999999
Q ss_pred ccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccH
Q 003806 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (794)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~ 565 (794)
++++||||||+.++++.|+.++|.+||+.|+.+.......+.+++.+|+.|.||||+||+++|++|+..|..++ ..++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCH
Confidence 99999999999999999999999999999998754333457899999999999999999999999999998765 56899
Q ss_pred HHHHHHHHHHhc
Q 003806 566 IDFIHAVERSIA 577 (794)
Q Consensus 566 ~d~~~Al~rvi~ 577 (794)
+||..|+.+...
T Consensus 454 ~dl~~a~~~~~P 465 (489)
T CHL00195 454 DDILLALKQFIP 465 (489)
T ss_pred HHHHHHHHhcCC
Confidence 999999987654
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=5.1e-37 Score=339.76 Aligned_cols=249 Identities=50% Similarity=0.774 Sum_probs=229.3
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+.|.++|+||+|+++++++|.+.+.. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 356889999999999999999999876 7899999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
..|.|.+...++.+|..++...||||||||+|.++..+.+.. ...+.+...++.+++.+++++....++.||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987765432 2345566788999999999988778999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (794)
.+|++++||||||+.|.|+.|+.++|.+|++.++.+. .+..++++..+++.|.||+|+||.++|++|+..|.++++..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~--~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM--KLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC--CCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999998654 45667899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 003806 563 VEKIDFIHAVERS 575 (794)
Q Consensus 563 It~~d~~~Al~rv 575 (794)
|+.+||..|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999875
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-38 Score=329.25 Aligned_cols=229 Identities=37% Similarity=0.623 Sum_probs=205.3
Q ss_pred cccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
+..+.|+|+|+||+|++.+|+.|+|.|-. ++-|+.|. -+.+|.+|+||||||||||++||+|+|.|++-.||+++.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt-GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT-GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhc-CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 44567999999999999999999998766 66666553 34567799999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC-CCcEEEEEEcC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATN 479 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN 479 (794)
++++|+|++++.++.+|+.|+.+.|+||||||||.++..|.+ ..++..+++-..||.+|.|... +.+|+|++|||
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 999999999999999999999999999999999999988864 3456677888999999999865 57899999999
Q ss_pred CCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
-|+.||.|++| ||+++|++++|+...|..+++.|+......+ .+.|+.+|++.|+||||+||.-+|+.|.+.-.|+
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~L-T~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVL-TEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCcccc-chhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999999 9999999999999999999999998765444 3558999999999999999999999998887664
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-37 Score=331.45 Aligned_cols=228 Identities=41% Similarity=0.630 Sum_probs=208.9
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhC-CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
.+..-.|+|+|+.|++++|+.|++.|-. ++.|+.|...+ .++|+||||+||||||||++|+|+|.++|.+|+.++++.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 3455679999999999999999998887 88998886433 468999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCc--EEEEEEc
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA--VIVLGAT 478 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~--VIVIaAT 478 (794)
+.++|.|++.+.++.+|..|.+..||||||||+|.+.+.|+ ...++.....-++|....||+.++.+ |+|+|||
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 99999999999999999999999999999999999998884 24566777788999999999988765 9999999
Q ss_pred CCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 479 N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
|+|..||.|++| |+.++++|+.|+..+|.+||+..+++. ++.+++|+.++|..|.||||.||.++|..|+....++
T Consensus 239 NRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 239 NRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 999999999999 999999999999999999999999876 5679999999999999999999999999999887653
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-38 Score=329.00 Aligned_cols=249 Identities=42% Similarity=0.668 Sum_probs=232.4
Q ss_pred CCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
....++|+++.|.-+...++++.++. +.+|+.|.++|+++|+|++||||||||||++|+++|..+|++|+.++.+.+.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 34568999999999999999998887 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
.|.|+++..+|+.|..|+...|||||+||||++++.+.. .....+.+..++|..|+++||+++....|-+|.|||+|+.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~s-e~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFS-EGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEec-cccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 999999999999999999999999999999999988733 3456788999999999999999999999999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~I 563 (794)
|||+|+||||+|+.+.+|+|+...|..|++.|.+. +....++|.+.+.+..+||.|+|+++.|.||-..|.+..+..+
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~--i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~v 361 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP--IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEV 361 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeecccc--ccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHH
Confidence 99999999999999999999999999999999765 3445678899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHh
Q 003806 564 EKIDFIHAVERSI 576 (794)
Q Consensus 564 t~~d~~~Al~rvi 576 (794)
-++|+..++.++-
T Consensus 362 l~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 362 LHEDFMKLVRKQA 374 (388)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999987753
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=5.2e-35 Score=333.41 Aligned_cols=256 Identities=36% Similarity=0.586 Sum_probs=213.3
Q ss_pred cccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc--------
Q 003806 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------- 392 (794)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------- 392 (794)
+.++.|.++|+||.|+++.++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34667899999999999999999998876 889999999999999999999999999999999999998654
Q ss_pred --EEEEecchhHHHhhccchHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC
Q 003806 393 --FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (794)
Q Consensus 393 --fi~is~se~~~~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 466 (794)
|+.++++++.+.|+|.++..++.+|+.|+.. .||||||||+|.++..++.+ ..++....++++||.+||++
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhccc
Confidence 6778888999999999999999999999864 69999999999999877532 23444567889999999999
Q ss_pred CCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccc---------cchhHHh----
Q 003806 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD---------IDLGDIA---- 533 (794)
Q Consensus 467 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d---------vdl~~LA---- 533 (794)
....+++||+|||+++.||||++||||||++|+|++|+.++|.+||+.++... +++..+ .++..++
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 98889999999999999999999999999999999999999999999998752 333111 1111121
Q ss_pred -------------------------hhcCCCCHHHHHHHHHHHHHHHHhh----CCccccHHHHHHHHHHHhcccch
Q 003806 534 -------------------------SMTTGFTGADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSIAGIEK 581 (794)
Q Consensus 534 -------------------------~~t~GfSgaDL~~Lv~eAal~A~r~----~~~~It~~d~~~Al~rvi~g~e~ 581 (794)
..++.+||++|+++|.+|...|.++ +...|+++|+..|+......-+.
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~ 484 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESED 484 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccccc
Confidence 1245678889999998888877754 34578888888888876654443
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.9e-32 Score=306.08 Aligned_cols=237 Identities=44% Similarity=0.665 Sum_probs=220.5
Q ss_pred CCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh
Q 003806 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~ 405 (794)
+.++ +++.|.......+++.+.+ +.+|..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++++++..|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 8999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcC-CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 003806 406 VGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (794)
Q Consensus 406 vG~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (794)
.|++++.+|..|++|.+.+ |+||||||+|++++++... +....++..+++..||+.....+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999998 9999999999999988642 224578899999999999988999999999999999
Q ss_pred CccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcccc
Q 003806 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVE 564 (794)
Q Consensus 485 DpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It 564 (794)
|++++| ||||+.+.+..|+..+|.+|++.+..+.+ +.+++++..+|..|.||+|+||..+|.+|++.+.++ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~--~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMN--LLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcC--CcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 99999999999999999999999998764 447889999999999999999999999999999887 7
Q ss_pred HHHHHHHHHHHhc
Q 003806 565 KIDFIHAVERSIA 577 (794)
Q Consensus 565 ~~d~~~Al~rvi~ 577 (794)
+++|..|+..+..
T Consensus 406 ~~~~~~A~~~i~p 418 (693)
T KOG0730|consen 406 LEIFQEALMGIRP 418 (693)
T ss_pred HHHHHHHHhcCCc
Confidence 8899998877543
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.8e-32 Score=302.51 Aligned_cols=250 Identities=34% Similarity=0.574 Sum_probs=209.6
Q ss_pred CCCccccc--ccCChHhHHHH-HH-HHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-CcEEEEecch
Q 003806 326 GDTITFAD--VAGVDEAKEEL-EE-IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSASE 400 (794)
Q Consensus 326 ~~~vtf~D--V~G~devK~~L-~e-iV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg-vpfi~is~se 400 (794)
.|...|++ |.|++..-..+ +. +....-.|+...++|++.-+|+|||||||||||++||.+..-++ .+--.+++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46677776 45666543333 22 23335577888899999999999999999999999999999886 3556689999
Q ss_pred hHHHhhccchHHHHHHHHHHHhc--------CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcE
Q 003806 401 FVELYVGMGASRVRDLFARAKKE--------APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 472 (794)
..++|+|+++..+|++|+.|.+. .=-||++||||++++.|+.. .++.....+++||||.-|||.+.-++|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998631 11399999999999999764 234455578999999999999999999
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc--CCCCCccccchhHHhhhcCCCCHHHHHHHHHH
Q 003806 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (794)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~--~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~e 550 (794)
+||+-|||.|.||+||+|||||.-++++.+||.++|.+|++.|..+ .+-.+..|+|+.+||..|..||||+|+.+|+.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999764 23357899999999999999999999999999
Q ss_pred HHHHHHhh---------------CCccccHHHHHHHHHHHhc
Q 003806 551 AALLAGRL---------------NKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 551 Aal~A~r~---------------~~~~It~~d~~~Al~rvi~ 577 (794)
|.-.|..+ ..-.|+++||..|++.+..
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 98877643 2346899999999997654
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.6e-32 Score=322.16 Aligned_cols=247 Identities=41% Similarity=0.633 Sum_probs=219.1
Q ss_pred CCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecc
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~s 399 (794)
...++|++|+|++.++.+|+|+|.+ |..|+.|..+++.||+|+|++||||||||+.|+++|..+ .+-|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4579999999999999999999988 889999999999999999999999999999999999877 4678888999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
+..++|+|..+..++.+|+.|++..|+|||+||||-|.+.|.. -.......++..||..|||.+.+..|+||+|||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs----kqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS----KQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc----hHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 9999999999999999999999999999999999999988753 245566788999999999999999999999999
Q ss_pred CCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC
Q 003806 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (794)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~ 559 (794)
+|+.+||||+||||||+.+++++|+.+.|.+|+..|-++..-++ ...-+..+|..|.||.|+||+.+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i-~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPI-SRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCC-CHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999988765333 23357889999999999999999999999998763
Q ss_pred Cc----------------cccHHHHHHHHHHHhc
Q 003806 560 KV----------------VVEKIDFIHAVERSIA 577 (794)
Q Consensus 560 ~~----------------~It~~d~~~Al~rvi~ 577 (794)
-. .|+..||..|+.+...
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p 527 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP 527 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCC
Confidence 32 2455566666655443
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=2.4e-31 Score=318.79 Aligned_cols=246 Identities=50% Similarity=0.800 Sum_probs=221.3
Q ss_pred CCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
.+.++|+||+|++++++.+.+++.. +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 889999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 003806 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (794)
Q Consensus 405 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (794)
|.|.....++.+|+.|....||||||||||.+...++.. ......+++++|+..|+++..+..++||++||+++.|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999998776532 2233457889999999999888899999999999999
Q ss_pred CccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC-----
Q 003806 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN----- 559 (794)
Q Consensus 485 DpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~----- 559 (794)
|++++|+|||++.+.++.|+.++|.+||+.+.+. .++..+++++.++..+.||+++|+..++++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988865 456778899999999999999999999999998876541
Q ss_pred --------------CccccHHHHHHHHHHHhc
Q 003806 560 --------------KVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 560 --------------~~~It~~d~~~Al~rvi~ 577 (794)
...++++||..|+..+..
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhccc
Confidence 124788999999876543
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.98 E-value=1.4e-31 Score=290.40 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=191.0
Q ss_pred CCcccccc-cCChHhHHHHHHHHHHhcChhHH-hhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 327 DTITFADV-AGVDEAKEELEEIVEFLRSPDKY-IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 327 ~~vtf~DV-~G~devK~~L~eiV~~Lk~p~~~-~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
..-+|+++ .|+--.+.-+..++-.+. +.| ...|+++|++++||||||||||++|+++|+++|++|+.++++++.+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34567777 666666666665543321 122 23678999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHh-----cCCEEEEEcccchhhhccCCCccccchHHHHHHH-HHHHHhhcCC------------
Q 003806 405 YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTEMDGF------------ 466 (794)
Q Consensus 405 ~vG~~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L-n~LL~emdg~------------ 466 (794)
|+|++++.+|++|..|+. .+||||||||||++++.++.. ......+.+ .+|++.||+.
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~----~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT----QYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC----CcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 999999999999999975 469999999999999887532 222234554 7889888853
Q ss_pred CCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCC----CCHH
Q 003806 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG----FTGA 542 (794)
Q Consensus 467 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G----fSga 542 (794)
+...+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++.++ + ..++..|+...+| |.|+
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~-~~dv~~Lv~~f~gq~~Df~GA 338 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--S-REDVVKLVDTFPGQPLDFFGA 338 (413)
T ss_pred ccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--C-HHHHHHHHHcCCCCCchhhhH
Confidence 34568999999999999999999999999865 589999999999999988654 2 4678888888877 5666
Q ss_pred HHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcccchhhhhcccchhhHHHHhhccceeee
Q 003806 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVG 605 (794)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~e~k~~~ls~~ek~~iA~HEaGHAvv~ 605 (794)
--..+..++...-..+- ..+.+ .+.+..-.++...+.+-..-+-+.-|+||.++.
T Consensus 339 lrar~yd~~v~~~i~~~----g~~~~----~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 339 LRARVYDDEVRKWIAEV----GVENL----GKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred HHHHHHHHHHHHHHHHh----hHHHH----HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 66666666654443221 11111 222221112223333334444556678887774
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-30 Score=282.61 Aligned_cols=244 Identities=36% Similarity=0.558 Sum_probs=206.1
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHh-cChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFL-RSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~L-k~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
...+.|.|+|++|++.+|+.+.+.+.+. ..|..|..+ ..+++|+||.||||||||+|++|+|.|.+..|+.++++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 4457799999999999999999998884 446665432 24678999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC--CCcEEEEEEcCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNR 480 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--~~~VIVIaATN~ 480 (794)
++|+|.+++.++.+|.-|+...|+||||||+|.+..+|.+. .++...+...++|..+++... +++|+||+|||+
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~----e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN----EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc----ccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 99999999999999999999999999999999999888543 445556777888888887654 468999999999
Q ss_pred CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCC
Q 003806 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (794)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~ 560 (794)
|+.+|.+++| ||.+++++++|+.+.|..+++..+.+....+ .+.+++.+++.|+|||+.||.++|.+|+.--.+...
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l-~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~ 376 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGL-SDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELG 376 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcc
Confidence 9999999999 9999999999999999999999998763333 456899999999999999999999999865444322
Q ss_pred -------------ccccHHHHHHHHHHH
Q 003806 561 -------------VVVEKIDFIHAVERS 575 (794)
Q Consensus 561 -------------~~It~~d~~~Al~rv 575 (794)
..|+..||..|+..+
T Consensus 377 ~~~~~~~~~~~~~r~i~~~df~~a~~~i 404 (428)
T KOG0740|consen 377 GTTDLEFIDADKIRPITYPDFKNAFKNI 404 (428)
T ss_pred cchhhhhcchhccCCCCcchHHHHHHhh
Confidence 234445666666544
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=2.1e-21 Score=209.03 Aligned_cols=212 Identities=20% Similarity=0.288 Sum_probs=164.3
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCC---CeEEEEcCCCChHHHHHHHHHHhc-------CCcEEEEecch
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP---RGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASE 400 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~p---kgVLL~GPPGTGKT~LAkALA~el-------gvpfi~is~se 400 (794)
+++++|++++|+++.+++.++..+..+.+.|..+| .++||+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 34899999999999999988777777777887654 348999999999999999999875 23799999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+...|.|..+..++.+|+.|. ++||||||+|.+.+.++. .+...+.++.|+..|+.. ..+++||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~------~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE------RDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc------cchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 999999988888888888874 469999999999654321 223356677888888743 356788888764
Q ss_pred CC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHh----hh--cCCCC-HHHHHHHH
Q 003806 481 SD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA----SM--TTGFT-GADLANLV 548 (794)
Q Consensus 481 pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA----~~--t~GfS-gaDL~~Lv 548 (794)
.. .++|+|.+ ||+.+|.|+.++.+++.+|++.++.+.+..+.++. ...+. +. .+.|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 34699998 99999999999999999999999988766666553 22222 21 23344 89999999
Q ss_pred HHHHHHHH
Q 003806 549 NEAALLAG 556 (794)
Q Consensus 549 ~eAal~A~ 556 (794)
+.|...-.
T Consensus 248 e~~~~~~~ 255 (287)
T CHL00181 248 DRARMRQA 255 (287)
T ss_pred HHHHHHHH
Confidence 98876543
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=3e-21 Score=204.72 Aligned_cols=212 Identities=21% Similarity=0.325 Sum_probs=162.0
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCC---CeEEEEcCCCChHHHHHHHHHHhc-------CCcEEEEecc
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP---RGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 399 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~p---kgVLL~GPPGTGKT~LAkALA~el-------gvpfi~is~s 399 (794)
.+++++|++++|+++++++.+..........|..++ .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 368899999999999999998766655566676533 468999999999999999999864 2478999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
++...|+|.....++++|+.|. ++||||||+|.|.... ..+.....++.|+..|+.. ...+++|++++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhcc--CCCEEEEecCC
Confidence 9999999999999999998874 4699999999996321 1122345678889888854 34566666654
Q ss_pred CCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhh---------cCCCCHHHHH
Q 003806 480 RSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM---------TTGFTGADLA 545 (794)
Q Consensus 480 ~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~---------t~GfSgaDL~ 545 (794)
..+ .++|++.+ ||+..+.++.++.+++.+|++.++...+..++++. +..++.. ...-+++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 332 36889988 99999999999999999999999987766665553 3333211 1123678899
Q ss_pred HHHHHHHHHHH
Q 003806 546 NLVNEAALLAG 556 (794)
Q Consensus 546 ~Lv~eAal~A~ 556 (794)
|+++.|.....
T Consensus 229 n~~e~a~~~~~ 239 (261)
T TIGR02881 229 NIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHH
Confidence 99988776553
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.8e-21 Score=207.32 Aligned_cols=235 Identities=26% Similarity=0.369 Sum_probs=178.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhh
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~v 406 (794)
+.-.|++|+-....+..++++...-.|.+. .-.+-++||+|||||||||++||-+|...|..+-.+.+.+..- .-
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 345599999999999999998876655443 3356689999999999999999999999999999998887643 22
Q ss_pred ccchHHHHHHHHHHHhcCCE-EEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 003806 407 GMGASRVRDLFARAKKEAPS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (794)
Q Consensus 407 G~~~~~vr~lF~~Ar~~aP~-ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (794)
.++...|.++|+.+++.... +|||||.|++.-.|.. ...++..+..||.||-.-. +....++++.+||+|..+|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 34557889999999876554 8999999999888764 3456777889999987643 3345788899999999999
Q ss_pred ccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCC----------------------CCccc---cchhHHhhhcCCCC
Q 003806 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL----------------------PLAKD---IDLGDIASMTTGFT 540 (794)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l----------------------~l~~d---vdl~~LA~~t~GfS 540 (794)
.|+-. |||.+|+|++|..++|..+|..|+.+.-. .+..+ -.+.+.|+.|.|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99988 99999999999999999999999876311 11110 01456789999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 003806 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (794)
|++|..|+-.-...+.-...-.++...|++.++
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 999999986433222222233445545555443
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=6.2e-21 Score=205.15 Aligned_cols=211 Identities=20% Similarity=0.303 Sum_probs=165.3
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCC---CCeEEEEcCCCChHHHHHHHHHHhcC-------CcEEEEecchhH
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFISCSASEFV 402 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkALA~elg-------vpfi~is~se~~ 402 (794)
+++|++++|+++.+++.++..++.+.+.|..+ ..++||+||||||||++|+++|..+. .+|+.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 34899999999999999999988762 379999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC-
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS- 481 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p- 481 (794)
..+.|..+..++++|++|. ++||||||+|.+.+.++. .+......+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~------~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc------cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999998888899998874 469999999998643321 122345667888888743 3567888887643
Q ss_pred -C---CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhh-------cCCCCHHHHHHHHHH
Q 003806 482 -D---VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 550 (794)
Q Consensus 482 -d---~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~-------t~GfSgaDL~~Lv~e 550 (794)
+ .++|+|.+ ||+..|.++.++.+++.+|++.++.+.+..+.++. +..+... ..--++++++|+++.
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 35899998 99999999999999999999999988655554432 3333332 222368999999999
Q ss_pred HHHHHHh
Q 003806 551 AALLAGR 557 (794)
Q Consensus 551 Aal~A~r 557 (794)
|......
T Consensus 249 ~~~~~~~ 255 (284)
T TIGR02880 249 ARLRQAN 255 (284)
T ss_pred HHHHHHH
Confidence 8766543
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=3e-21 Score=180.65 Aligned_cols=130 Identities=45% Similarity=0.671 Sum_probs=117.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcC-CEEEEEcccchhhhccCCCccc
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRI 446 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~ 446 (794)
|||+||||||||++|+.+|..++.+++.++++++.+.+.+.....++++|.+++... ||||||||+|.+....+ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998888999999999999999888 99999999999988762 2
Q ss_pred cchHHHHHHHHHHHHhhcCCCCC-CcEEEEEEcCCCCCCCccccCCCccceEEEeec
Q 003806 447 VSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (794)
Q Consensus 447 ~~~~e~~~~Ln~LL~emdg~~~~-~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (794)
.........+++|+..++..... .+++||++||.++.++++++| +||++.|++++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 34566778899999999987765 569999999999999999998 89999999874
No 44
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.9e-21 Score=209.58 Aligned_cols=208 Identities=28% Similarity=0.360 Sum_probs=161.9
Q ss_pred CcccccccCChHhHHHHH-HHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhh
Q 003806 328 TITFADVAGVDEAKEELE-EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~-eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~v 406 (794)
+-+|+.|+-..+.|++|. ++.+|.+..+-|.+.|..--+|.|||||||||||+++.|+|++++..++.++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 388999999999999885 5778889999999999999999999999999999999999999999999888766432
Q ss_pred ccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccc--cch-HHHHHHHHHHHHhhcCCCCCC--cEEEEEEcCCC
Q 003806 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI--VSN-DEREQTLNQLLTEMDGFDSNS--AVIVLGATNRS 481 (794)
Q Consensus 407 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~--~~~-~e~~~~Ln~LL~emdg~~~~~--~VIVIaATN~p 481 (794)
... ++.++..+.. .+||+|++||+-...+...... ..+ ....-++..||+.+||.-+.. --|||.|||++
T Consensus 274 --n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 274 --DSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --cHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 223 7777765543 4699999999975433221110 111 123468999999999987654 56888999999
Q ss_pred CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCC--CCHHHHHHH
Q 003806 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG--FTGADLANL 547 (794)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G--fSgaDL~~L 547 (794)
+.|||||+||||+|.+|++..-+..+-+.+++.++.... +..-++++.+...+ .|+||+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~----~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE----DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC----CcchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999986532 11223444443333 589998654
No 45
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.7e-20 Score=215.63 Aligned_cols=315 Identities=25% Similarity=0.354 Sum_probs=211.5
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-------
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE------- 403 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~------- 403 (794)
=.|.+|++++|+++.|.+...+.... .....+||+||||+|||+|++++|..+|.+|+.++...+.+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 35899999999999887765433211 22346999999999999999999999999999999887754
Q ss_pred --HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCC----ccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 003806 404 --LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR----FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (794)
Q Consensus 404 --~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (794)
.|+|..+.++-+-+.+|...+| +++|||||.++.+..+. +.+..++|++..++..+-+++ ++ -+.|++|||
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~-yD-LS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVP-YD-LSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCc-cc-hhheEEEee
Confidence 6999999999999999999999 99999999998776543 345556777766666666654 33 368999999
Q ss_pred cCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 003806 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (794)
Q Consensus 478 TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r 557 (794)
+|..+.++.+|+. |+. +|.+.-+...+..+|.+.|+-.+ .+.-..+....-.++...|..+++...+.|.-
T Consensus 473 ANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk------~~~~~gL~~~el~i~d~ai~~iI~~YTREAGV 543 (782)
T COG0466 473 ANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPK------QLKEHGLKKGELTITDEAIKDIIRYYTREAGV 543 (782)
T ss_pred cCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchH------HHHHcCCCccceeecHHHHHHHHHHHhHhhhh
Confidence 9999999999998 876 89999999999999999987432 11122222223346778888888888888766
Q ss_pred hCCccccHHHHHHHHHHHhcccchhhhh--cccchhhHHHHhhccceeeeh-hhhhhCCCCC--CccceeeecCCccccc
Q 003806 558 LNKVVVEKIDFIHAVERSIAGIEKKTAK--LKGSEKAVVARHEAGHAVVGT-AVASLLPGQP--RVEKLSILPRTGGALG 632 (794)
Q Consensus 558 ~~~~~It~~d~~~Al~rvi~g~e~k~~~--ls~~ek~~iA~HEaGHAvv~~-~l~~~l~~~~--~v~kvsi~pr~g~alG 632 (794)
++ |+|.+..+.+|... +....+.. ..+.. .+. -+.+.. ...+..-....|.+.|
T Consensus 544 R~------------LeR~i~ki~RK~~~~i~~~~~k~~--------~~i~~~~l~-~yLG~~~f~~~~~~~~~~vGvVtG 602 (782)
T COG0466 544 RN------------LEREIAKICRKAAKKILLKKEKSI--------VKIDEKNLK-KYLGVPVFRYGKAEEEDQVGVVTG 602 (782)
T ss_pred hH------------HHHHHHHHHHHHHHHHHhcCcccc--------eeeCHHHHH-HHhCCcccCccccccCCCCeeEee
Confidence 54 45544444444322 11111111 11111 111 111211 2223333344578899
Q ss_pred eEeecCCCccccccHHHHHHHHHHhhhhHHHHHHHcCCccccchhhH-HHHHHHHHHHH----HHHhCCCCC
Q 003806 633 FTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDD-IRRATDMAYKA----IAEYGLNRT 699 (794)
Q Consensus 633 ~~~~~~~~~~~~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~D-l~~AT~lA~~m----v~~~Gm~~~ 699 (794)
++|++.+++ +++.+. +.+-|.- ++ .-||.-.| ++...++|..+ ..+||.+..
T Consensus 603 LAWT~vGGd--~L~IE~------~~~~Gkg--~l-----~lTG~LGdVMKESa~~A~s~vrs~a~~~~i~~~ 659 (782)
T COG0466 603 LAWTEVGGD--LLTIEA------VKMPGKG--KL-----TLTGSLGDVMKESAQAALSYVRSRAEKLGIDPD 659 (782)
T ss_pred eeeecCCce--EEEEEE------EEecCCc--cE-----EEeccHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999998887 333322 1233432 23 23666666 34444455554 467787653
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.80 E-value=1.5e-18 Score=189.88 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=164.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhh
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~v 406 (794)
.+.+|+|++|+++.++.+..++...+.+ ..++.++||+||||||||++|+++|++++.++..++++.+.
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4568999999999999998887654322 24567899999999999999999999999998877765432
Q ss_pred ccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhh------cC-CC------CCCcEE
Q 003806 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM------DG-FD------SNSAVI 473 (794)
Q Consensus 407 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em------dg-~~------~~~~VI 473 (794)
....+..++... ..++||||||||.+.... .+.+..++... +. .. .-.++.
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchHH------------HHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 123344444433 346799999999985321 12222222211 10 00 013478
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHH
Q 003806 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (794)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal 553 (794)
+|++||++..++++|++ ||...+.++.|+.+++.+|++..+...++.++++ .++.+++.+.| +++.+.++++.+..
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~-~~~~ia~~~~G-~pR~a~~~l~~~~~ 228 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEE-GALEIARRSRG-TPRIANRLLRRVRD 228 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 89999999999999987 9998999999999999999999998877766555 47889999988 57999999998888
Q ss_pred HHHhhCCccccHHHHHHHHHH
Q 003806 554 LAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~r 574 (794)
.|..++...|+.+++..+++.
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHH
Confidence 787666778999999999865
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=7.5e-19 Score=180.96 Aligned_cols=196 Identities=26% Similarity=0.363 Sum_probs=132.7
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+.-.+.+|+|++|++++++.+.-+++..+.. .....++|||||||+|||+||+.+|++++++|...+++.+.
T Consensus 15 ~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 15 AERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 34456779999999999999988777654332 23455799999999999999999999999999999886532
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--------CC-----
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SN----- 469 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~----- 469 (794)
....+..++.... ...||||||||.+.+..+ ..|+..|+.+. .+
T Consensus 88 ------k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~q---------------e~LlpamEd~~idiiiG~g~~ar~~~ 144 (233)
T PF05496_consen 88 ------KAGDLAAILTNLK--EGDILFIDEIHRLNKAQQ---------------EILLPAMEDGKIDIIIGKGPNARSIR 144 (233)
T ss_dssp ------SCHHHHHHHHT----TT-EEEECTCCC--HHHH---------------HHHHHHHHCSEEEEEBSSSSS-BEEE
T ss_pred ------hHHHHHHHHHhcC--CCcEEEEechhhccHHHH---------------HHHHHHhccCeEEEEeccccccceee
Confidence 1233444444433 346999999999865432 23445554321 11
Q ss_pred ---CcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHH
Q 003806 470 ---SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 546 (794)
Q Consensus 470 ---~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~ 546 (794)
.++.+|+||++...|.++|+. ||.....+..++.++..+|++......++++.++ ...+||+++.| +++-..+
T Consensus 145 ~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~-~~~~Ia~rsrG-tPRiAnr 220 (233)
T PF05496_consen 145 INLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDED-AAEEIARRSRG-TPRIANR 220 (233)
T ss_dssp EE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HH-HHHHHHHCTTT-SHHHHHH
T ss_pred ccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHhcCC-ChHHHHH
Confidence 357899999999999999998 9999899999999999999998887776666554 46789999998 8888888
Q ss_pred HHHHHH
Q 003806 547 LVNEAA 552 (794)
Q Consensus 547 Lv~eAa 552 (794)
+++++.
T Consensus 221 ll~rvr 226 (233)
T PF05496_consen 221 LLRRVR 226 (233)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 877653
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.79 E-value=2.5e-18 Score=185.41 Aligned_cols=214 Identities=22% Similarity=0.308 Sum_probs=157.4
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccc
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~ 409 (794)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||+||+++|.+++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999998877543321 234667999999999999999999999999887766543211
Q ss_pred hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc-------CCC------CCCcEEEEE
Q 003806 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-------GFD------SNSAVIVLG 476 (794)
Q Consensus 410 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd-------g~~------~~~~VIVIa 476 (794)
...+...+... ..++||||||+|.+..... ..+..++.... +.. ...++++|+
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH------------HHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 12233333322 3467999999999864321 11222221110 000 113478999
Q ss_pred EcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 003806 477 ATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (794)
Q Consensus 477 ATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~ 556 (794)
+||++..+++++++ ||...+.+++|+.+++.++++..+...++.++++ .++.+++.+.| .++.+.++++.+...|.
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~-al~~ia~~~~G-~pR~~~~ll~~~~~~a~ 210 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE-AALEIARRSRG-TPRIANRLLRRVRDFAQ 210 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHhCC-CcchHHHHHHHHHHHHH
Confidence 99999999999988 9988999999999999999999988766655544 46788999888 56888899998877776
Q ss_pred hhCCccccHHHHHHHHHH
Q 003806 557 RLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 557 r~~~~~It~~d~~~Al~r 574 (794)
..+...|+.+++..++..
T Consensus 211 ~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 211 VRGQKIINRDIALKALEM 228 (305)
T ss_pred HcCCCCcCHHHHHHHHHH
Confidence 666677999999999876
No 49
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.1e-19 Score=203.04 Aligned_cols=175 Identities=23% Similarity=0.347 Sum_probs=135.8
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH--------
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-------- 403 (794)
+|.+|++++|+++.|++..-+. .|-...+.+||+||||+|||+++|+||..+|..|+.+|...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 5899999999999998765222 12344667999999999999999999999999999999876654
Q ss_pred -HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCC----ccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR----FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 404 -~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
.|+|.++.++.+.++..+..+| +++|||||.+++.-++. +.+..++|.+..++.-+- |---.-++|++|||+
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYL--dVp~DLSkVLFicTA 561 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYL--DVPVDLSKVLFICTA 561 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcc--ccccchhheEEEEec
Confidence 6999999999999999999999 99999999999544432 112223333322222111 111123679999999
Q ss_pred CCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc
Q 003806 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (794)
Q Consensus 479 N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (794)
|..+.|+++|+. |+. .|.++-+..++..+|.+.|+-.
T Consensus 562 N~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 562 NVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred cccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 999999999997 775 7888889999999999988754
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.4e-18 Score=184.35 Aligned_cols=240 Identities=24% Similarity=0.284 Sum_probs=174.9
Q ss_pred cccccCChHhHHHHHHHHHH-hcChhHHhh-hCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CcEEEEecc
Q 003806 331 FADVAGVDEAKEELEEIVEF-LRSPDKYIR-LGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSAS 399 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~-Lk~p~~~~~-lg~~~pkgVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~s 399 (794)
|+.++=-..+|++|...+.. ++-.++-.. --+...+-+||+||||||||+|+||+|+.+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 55555556778877765543 221111110 0123456699999999999999999999873 467999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhc---CC--EEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 003806 400 EFVELYVGMGASRVRDLFARAKKE---AP--SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (794)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~Ar~~---aP--~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (794)
.+.++|.+++.+.+..+|++.... .. -.++|||+++++..|............-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999988642 12 2567999999998885433333334457899999999999999999999
Q ss_pred EEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc---CCCCCccc--------c-----chhHHhh-hcC
Q 003806 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK---KELPLAKD--------I-----DLGDIAS-MTT 537 (794)
Q Consensus 475 IaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~---~~l~l~~d--------v-----dl~~LA~-~t~ 537 (794)
++|+|-.+.||.|+.. |-|-+.++.+|+...+.+|++..+.. .++-+... + ....++. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999998 99999999999999999999987653 12111111 1 1122233 358
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 538 GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
|.||+.|+.+=--|...- -....|+.++|..|+-.
T Consensus 379 gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLE 413 (423)
T ss_pred CCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHH
Confidence 999999988855443222 23357888888888744
No 51
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-17 Score=192.79 Aligned_cols=206 Identities=27% Similarity=0.416 Sum_probs=172.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhcc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 440 (794)
+......+||+|+||||||++++++|.++|.+++.++|.++...-.+..+.++...|.+|+...|||||+-++|.++.++
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 34455569999999999999999999999999999999999998888889999999999999999999999999998665
Q ss_pred CCCccccchHHHHHHHHHHHHhhcCCC-CCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC
Q 003806 441 DGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 519 (794)
Q Consensus 441 ~~~~~~~~~~e~~~~Ln~LL~emdg~~-~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~ 519 (794)
++ +.+-..-+.++.++. .|-+. +..+++||++|+..+.+++.+++ -|-..|.++.|+.++|.+||+.++...
T Consensus 507 dg----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~ 579 (953)
T KOG0736|consen 507 DG----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHL 579 (953)
T ss_pred CC----chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhcc
Confidence 43 334445566666666 33333 45789999999999999999998 677789999999999999999999764
Q ss_pred CCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHh---h-----------------CCccccHHHHHHHHHHH
Q 003806 520 ELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR---L-----------------NKVVVEKIDFIHAVERS 575 (794)
Q Consensus 520 ~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r---~-----------------~~~~It~~d~~~Al~rv 575 (794)
.+..++.+..+|.+|.||+.+||..++..+.+.+.. + ....++++||..|+.+.
T Consensus 580 --~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 580 --PLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred --ccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHH
Confidence 678899999999999999999999998876333321 1 12568999999999974
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.76 E-value=6.1e-18 Score=204.37 Aligned_cols=202 Identities=25% Similarity=0.330 Sum_probs=143.3
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH---------
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--------- 402 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~--------- 402 (794)
+|++|++++|+.+.+.+...+.. +...+..+||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35999999999998876543211 112334799999999999999999999999999999876543
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcC-----CC--------CC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg-----~~--------~~ 469 (794)
..|+|.....+.+.|..+....| ||||||||.+.+..++. ..+.|+..+|. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-----------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-----------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-----------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24677778888889998887777 89999999998643321 12445555442 11 12
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc-----CCC-----CCccccchhHHhh-hcCC
Q 003806 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIAS-MTTG 538 (794)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~-----~~l-----~l~~dvdl~~LA~-~t~G 538 (794)
+++++|+|||.++.++++|++ ||+ .|.++.|+.+++.+|++.++.. .++ .+.++ .+..+++ .+..
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~-~l~~i~~~~~~e 537 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDE-ALLLLIKYYTRE 537 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHH-HHHHHHHhcChh
Confidence 578999999999999999998 995 7899999999999999887632 222 11111 2344443 4444
Q ss_pred CCHHHHHHHHHHHHHHH
Q 003806 539 FTGADLANLVNEAALLA 555 (794)
Q Consensus 539 fSgaDL~~Lv~eAal~A 555 (794)
+..++|+..+...+..+
T Consensus 538 ~g~R~l~r~i~~~~~~~ 554 (775)
T TIGR00763 538 AGVRNLERQIEKICRKA 554 (775)
T ss_pred cCChHHHHHHHHHHHHH
Confidence 44566666555544333
No 53
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.5e-17 Score=190.07 Aligned_cols=232 Identities=24% Similarity=0.231 Sum_probs=178.1
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhHHHhhc
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVG 407 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~~~~vG 407 (794)
.|++-...+|++..+ ....| +-.+.++||+||+|||||.|+++++.++ .+.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566666677765544 22222 3345679999999999999999999987 356778899988766566
Q ss_pred cchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhh-cCC-CCCCcEEEEEEcCCCCCCC
Q 003806 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-DGF-DSNSAVIVLGATNRSDVLD 485 (794)
Q Consensus 408 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em-dg~-~~~~~VIVIaATN~pd~LD 485 (794)
...+-++.+|..|.+++|+||++|++|.|....+.. .+......+.++.++.++ +.+ ..+..+.|||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e--~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNE--NGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCccc--CCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 667788999999999999999999999998733221 233444455555555332 222 3345679999999999999
Q ss_pred ccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh----CCc
Q 003806 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL----NKV 561 (794)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~----~~~ 561 (794)
|-|.+|++|+.++.++.|+..+|.+||+..+++... ....-|++-++..|+||...||.-++.+|...|.+. +.+
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999999999999999999987532 112225666999999999999999999998888732 344
Q ss_pred cccHHHHHHHHHHHh
Q 003806 562 VVEKIDFIHAVERSI 576 (794)
Q Consensus 562 ~It~~d~~~Al~rvi 576 (794)
.++.++|.++++.-.
T Consensus 635 lltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFV 649 (952)
T ss_pred cchHHHHHHHHHhcC
Confidence 889999999998744
No 54
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.5e-17 Score=189.72 Aligned_cols=219 Identities=47% Similarity=0.700 Sum_probs=194.5
Q ss_pred hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEE
Q 003806 351 LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFI 430 (794)
Q Consensus 351 Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfI 430 (794)
+..++.+...+..+|++++++||||||||++++++|.+ +.+++.+++.+....+.|......+.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 35677788999999999999999999999999999999 77668899999999999999999999999999999999999
Q ss_pred cccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHH
Q 003806 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (794)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~e 510 (794)
||+|.+.+.+.. .........+.+++..|++..... +++++.||++..+|+++++||||++.+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988764 233445678899999999988444 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC------CccccHHHHHHHHHHHhc
Q 003806 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------KVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~------~~~It~~d~~~Al~rvi~ 577 (794)
|+..+... .....+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 158 i~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 158 ILQIHTRL--MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHhc--CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99998865 345567899999999999999999999999998888774 355888999999998754
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.5e-17 Score=181.69 Aligned_cols=210 Identities=31% Similarity=0.428 Sum_probs=147.1
Q ss_pred cCCCCcccccccCChHhHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 324 EQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~---L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
..-.+.+++|++|+++...+ |..+++ .....+++||||||||||+||+.+|+..+.+|..+|+
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA-- 81 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA-- 81 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc--
Confidence 34457789999999986633 233332 2334579999999999999999999999999999998
Q ss_pred hHHHhhccchHHHHHHHHHHHhcC----CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 003806 401 FVELYVGMGASRVRDLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (794)
+-.+.+.++++++.|+... ..||||||||.+.+..++ .||-.|+ +..|++|+
T Consensus 82 -----v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD---------------~lLp~vE----~G~iilIG 137 (436)
T COG2256 82 -----VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQD---------------ALLPHVE----NGTIILIG 137 (436)
T ss_pred -----ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhh---------------hhhhhhc----CCeEEEEe
Confidence 3446788999999996532 469999999999766543 4555555 56788888
Q ss_pred Ec--CCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCc------cccchhHHhhhcCCCCHHHHHHHH
Q 003806 477 AT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA------KDIDLGDIASMTTGFTGADLANLV 548 (794)
Q Consensus 477 AT--N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~------~dvdl~~LA~~t~GfSgaDL~~Lv 548 (794)
|| |+.-.|.+||++ | .+++.+.+.+.++..++++..+......+. ++-.++.++..+.| ..+-.-|++
T Consensus 138 ATTENPsF~ln~ALlS--R-~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~aLN~L 213 (436)
T COG2256 138 ATTENPSFELNPALLS--R-ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRALNLL 213 (436)
T ss_pred ccCCCCCeeecHHHhh--h-hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHHHHHH
Confidence 88 666899999998 4 448899999999999999985443322232 12235556776666 344444554
Q ss_pred HHHHHHHHhhCCccccHHHHHHHHHHHhc
Q 003806 549 NEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 549 ~eAal~A~r~~~~~It~~d~~~Al~rvi~ 577 (794)
+.+...+ +.+. .++.+++.+.+.+...
T Consensus 214 E~~~~~~-~~~~-~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 214 ELAALSA-EPDE-VLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHhc-CCCc-ccCHHHHHHHHhhhhh
Confidence 4444444 2233 3336777777765443
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=5.3e-17 Score=170.53 Aligned_cols=216 Identities=23% Similarity=0.286 Sum_probs=169.8
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~ 405 (794)
-.+-+|+|.+|++++|+.|+=++..-+.. ....-++||+||||.|||+||..+|+|+|+.+-..++.-+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 34678999999999999998887764432 345678999999999999999999999999999998876532
Q ss_pred hccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--------C--------C
Q 003806 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S--------N 469 (794)
Q Consensus 406 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~--------~ 469 (794)
+..+-.++.... .-+|+||||||++.+.- ++ -|+..|+.|. + -
T Consensus 91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v------------EE---~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 91 ----PGDLAAILTNLE--EGDVLFIDEIHRLSPAV------------EE---VLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ----hhhHHHHHhcCC--cCCeEEEehhhhcChhH------------HH---HhhhhhhheeEEEEEccCCccceEeccC
Confidence 233334444332 23699999999986432 22 2333444331 1 1
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHH
Q 003806 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (794)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~ 549 (794)
.++-+|+||.+...|...|+. ||.....+..++.++..+|++......++.+.++ ...++|+++.| +++=..++++
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChH-HHHHHHHhccC-CcHHHHHHHH
Confidence 367899999999999999988 9999999999999999999999887766655544 46779999998 8998899999
Q ss_pred HHHHHHHhhCCccccHHHHHHHHHHH
Q 003806 550 EAALLAGRLNKVVVEKIDFIHAVERS 575 (794)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~rv 575 (794)
+..-.|.-++...|+..-...|++..
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 99999988888999998888888764
No 57
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.74 E-value=2.6e-17 Score=191.18 Aligned_cols=219 Identities=24% Similarity=0.304 Sum_probs=153.2
Q ss_pred CccccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------
Q 003806 320 AKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------- 389 (794)
Q Consensus 320 ~~~~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---------- 389 (794)
....+..++.+|+|++|+++..+.++..+ . ...+.++||+||||||||++|++++.++
T Consensus 53 ~~~~~~~rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~ 120 (531)
T TIGR02902 53 EPLSEKTRPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKE 120 (531)
T ss_pred chHHHhhCcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCC
Confidence 34456667889999999999988876532 1 2345689999999999999999997642
Q ss_pred CCcEEEEecchh-------HHHhhccchH----------------HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccc
Q 003806 390 EVPFISCSASEF-------VELYVGMGAS----------------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (794)
Q Consensus 390 gvpfi~is~se~-------~~~~vG~~~~----------------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (794)
+.||+.++|... .+...+.... .-...+.+| ..++|||||||.|....+
T Consensus 121 ~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~q----- 192 (531)
T TIGR02902 121 GAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQM----- 192 (531)
T ss_pred CCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHHH-----
Confidence 468999988631 1111111000 001122222 346999999999864322
Q ss_pred cchHHHHHHHHHHHHhhcCC--------------------------CCCCcE-EEEEEcCCCCCCCccccCCCccceEEE
Q 003806 447 VSNDEREQTLNQLLTEMDGF--------------------------DSNSAV-IVLGATNRSDVLDPALRRPGRFDRVVM 499 (794)
Q Consensus 447 ~~~~e~~~~Ln~LL~emdg~--------------------------~~~~~V-IVIaATN~pd~LDpALlRpGRFdr~I~ 499 (794)
+.|+..|+.. .....+ ++++|||.|+.|+|++++ |+. .+.
T Consensus 193 ----------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~ 259 (531)
T TIGR02902 193 ----------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIF 259 (531)
T ss_pred ----------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eee
Confidence 2333322210 001223 445666789999999998 765 788
Q ss_pred eecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
+++++.+++.+|++..+++.++.+++++ ++.++..+. +++++.++++.|+..|..+++..|+.+|+.+++..
T Consensus 260 f~pL~~eei~~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 260 FRPLLDEEIKEIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 8899999999999999988777665553 667777664 78999999999999998888889999999999854
No 58
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.73 E-value=3.5e-17 Score=196.81 Aligned_cols=224 Identities=23% Similarity=0.290 Sum_probs=162.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEE
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~i 396 (794)
.+-++++++|.++..+.+.+++ .. +...++||+||||||||++|+++|.++ +.+++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L---~~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVL---CR---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHH---hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3457889999998777554443 22 234579999999999999999999987 6779999
Q ss_pred ecchhH--HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 003806 397 SASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (794)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (794)
+++.+. ..|.|..+.+++++|+.+....|+||||||+|.+.+..... .+..+ .-+.|...+. +..+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~----~~~~L~~~l~----~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD----ASNLLKPALS----SGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH----HHHHHHHHHh----CCCeEE
Confidence 988887 37889999999999999988889999999999998654221 11111 1233444443 467899
Q ss_pred EEEcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC----CCCCccccchhHHhhhcCCCC-----
Q 003806 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGFT----- 540 (794)
Q Consensus 475 IaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~t~GfS----- 540 (794)
|++||..+ .+|++|.| ||+ .|.++.|+.+++.+||+...... ++.+.++ .+..++..+..|-
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~-al~~~~~ls~ryi~~r~~ 390 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDE-ALEAAVELSARYINDRFL 390 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHH-HHHHHHHhhhcccccccC
Confidence 99998743 57999999 997 79999999999999999766542 2233332 3556666555543
Q ss_pred HHHHHHHHHHHHHHHHhh----CCccccHHHHHHHHHHHh
Q 003806 541 GADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 541 gaDL~~Lv~eAal~A~r~----~~~~It~~d~~~Al~rvi 576 (794)
+.-.-.++++|+.....+ .+..|+.+|+..++.+..
T Consensus 391 P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 391 PDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 344467777776544322 235699999999998753
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=9.9e-16 Score=175.30 Aligned_cols=206 Identities=19% Similarity=0.238 Sum_probs=149.5
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------------
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------- 391 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv------------- 391 (794)
..++.+|+|++|++++++.|...+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 34677899999999998888775531 245677999999999999999999998764
Q ss_pred -----------cEEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHH
Q 003806 392 -----------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (794)
Q Consensus 392 -----------pfi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (794)
.++.++++. ..+...+|++.+.+.. ....||||||+|.+.. ...
T Consensus 76 ~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~ 134 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAF 134 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHH
Confidence 233333321 2234556666665542 2346999999999842 234
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhc
Q 003806 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (794)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (794)
+.|+..++.. ...+++|++|+.+..+++++++ |+ ..+.+.+|+.++...+++..+...++.+.++ .++.|+..+
T Consensus 135 ~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~e-al~~Ia~~s 208 (472)
T PRK14962 135 NALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDRE-ALSFIAKRA 208 (472)
T ss_pred HHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHh
Confidence 6777777743 3467777777778899999998 65 4899999999999999999988777766554 477888877
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 003806 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (794)
.| +.+++.+.++.+...+ + ..|+.+++.+++.
T Consensus 209 ~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 209 SG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred CC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 65 6677777776654332 2 2499999888874
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1e-15 Score=173.79 Aligned_cols=212 Identities=17% Similarity=0.230 Sum_probs=153.5
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------EEEE
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------fi~i 396 (794)
....+.+|+||+|++.+.+.|...+.. .+.+..+||+||||||||++|+.+|+.+++. +..|
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 445678899999999999988776642 2345679999999999999999999988753 1111
Q ss_pred -ecchhH--------H--HhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHH
Q 003806 397 -SASEFV--------E--LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (794)
Q Consensus 397 -s~se~~--------~--~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (794)
+|..+. + .....+...+|++.+.+.. ....|+||||+|.|.. ...|.||.
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLK 143 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLK 143 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHH
Confidence 111111 0 0012234566766665542 3456999999999852 35688888
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCH
Q 003806 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (794)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (794)
.|+. +...+++|.+|+.++.|.+++++ |. .++.+..++.++..+.++..+...++.+.++ .+..|++.+.| +.
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~S~G-d~ 216 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKKGDG-SV 216 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-hH
Confidence 8874 44678999999999999999998 64 3788999999999999999988877766544 57889998888 78
Q ss_pred HHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
++..++++.+...+ ...|+.+++.+.+
T Consensus 217 RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 217 RDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 99999988766432 2347777665544
No 61
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=9.2e-16 Score=183.77 Aligned_cols=221 Identities=22% Similarity=0.292 Sum_probs=155.1
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEecc
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSAS 399 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~is~s 399 (794)
.++.++|.++..+.+.+++.. +.+.++||+||||||||++|+++|... +..++.++.+
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 466799999876666654432 234578999999999999999999764 4556666665
Q ss_pred hhH--HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 003806 400 EFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (794)
Q Consensus 400 e~~--~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (794)
.+. ..|.|..+.+++.+|..+....++||||||||.+.+..... ++..+...++..+ + .+..+.+|++
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~---~g~~d~~nlLkp~---L----~~g~i~vIgA 321 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQVDAANLIKPL---L----SSGKIRVIGS 321 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---CcHHHHHHHHHHH---H----hCCCeEEEec
Confidence 555 35788889999999999988889999999999997654321 1122222222222 2 2467999999
Q ss_pred cCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCC----CCCccccchhHHhh-----hcCCCCHHH
Q 003806 478 TNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----LPLAKDIDLGDIAS-----MTTGFTGAD 543 (794)
Q Consensus 478 TN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~----l~l~~dvdl~~LA~-----~t~GfSgaD 543 (794)
||.++ ..|++|.| ||+ .|.|+.|+.+++.+||+.+..+.. +.+.++ .+...+. .+..+-+..
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~-al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHH-HHHHHHHHhhccccCccChHH
Confidence 99875 57999999 997 799999999999999998765432 222221 1222222 223445668
Q ss_pred HHHHHHHHHHHHH----hhCCccccHHHHHHHHHHHh
Q 003806 544 LANLVNEAALLAG----RLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 544 L~~Lv~eAal~A~----r~~~~~It~~d~~~Al~rvi 576 (794)
...++++|+.... ...+..|+.+|+.+.+.+..
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 8899999886442 22345688899999887754
No 62
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.67 E-value=9.5e-16 Score=174.92 Aligned_cols=225 Identities=21% Similarity=0.261 Sum_probs=151.3
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecch
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se 400 (794)
.+..+|++.+.-+.-......+.....+| .....+++||||||||||+|+++++.++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~-------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc-------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 35678999553233222222222222222 1233569999999999999999999987 56789999998
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
|...+.........+.|..... .+++|+|||+|.+..+.. ...+.-.++|.+.. +...+||+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~------~~~~l~~~~n~l~~-------~~~~iiits~~~ 254 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER------TQEEFFHTFNALHE-------AGKQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH------HHHHHHHHHHHHHH-------CCCcEEEECCCC
Confidence 8776544322111222332222 467999999999853321 11122222222222 233466666666
Q ss_pred CCC---CCccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 481 pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
|.. +++.|.+ ||. ..+.+..|+.++|.+|++..+...++.+++++ ++.||....| +.++|..+++.....|
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHHHHH
Confidence 654 6788887 885 58999999999999999999987777777664 8888998877 8999999999988777
Q ss_pred HhhCCccccHHHHHHHHHHHh
Q 003806 556 GRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi 576 (794)
...+ ..|+.+.+.+++....
T Consensus 331 ~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 331 SLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HhhC-CCCCHHHHHHHHHHhh
Confidence 6554 5589999999998654
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=99.67 E-value=2.3e-15 Score=173.21 Aligned_cols=209 Identities=23% Similarity=0.278 Sum_probs=149.9
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
...+.+|+|++|++++++.|.+.+....+ ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~- 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT- 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc-
Confidence 34567899999999999999888765432 245789999999999999999999999999999999887542
Q ss_pred hhccchHHHHHHHHHHHh------cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 405 YVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 405 ~vG~~~~~vr~lF~~Ar~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
...++.+...+.. ..+.||+|||+|.+....+ ...++.|+..++. .+..+|+++
T Consensus 78 -----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-----------~~~~~aL~~~l~~----~~~~iIli~ 137 (482)
T PRK04195 78 -----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-----------RGGARAILELIKK----AKQPIILTA 137 (482)
T ss_pred -----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-----------hhHHHHHHHHHHc----CCCCEEEec
Confidence 1223333333321 2467999999999864211 1233455555552 233566678
Q ss_pred CCCCCCCc-cccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 003806 479 NRSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (794)
Q Consensus 479 N~pd~LDp-ALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r 557 (794)
|.+..+++ .|++ ....|.|+.|+..+...+++..+...++.+.++ .++.|+..+.| |++.+++.....+
T Consensus 138 n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~G----DlR~ain~Lq~~a-- 207 (482)
T PRK04195 138 NDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSGG----DLRSAINDLQAIA-- 207 (482)
T ss_pred cCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHh--
Confidence 88887877 5554 356899999999999999999998887776544 47778887654 7888887766544
Q ss_pred hCCccccHHHHHHHH
Q 003806 558 LNKVVVEKIDFIHAV 572 (794)
Q Consensus 558 ~~~~~It~~d~~~Al 572 (794)
.+...|+.+++....
T Consensus 208 ~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 EGYGKLTLEDVKTLG 222 (482)
T ss_pred cCCCCCcHHHHHHhh
Confidence 344567777776544
No 64
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.66 E-value=8.2e-16 Score=185.24 Aligned_cols=164 Identities=22% Similarity=0.349 Sum_probs=126.7
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH--------
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-------- 403 (794)
+|++|++++|+.+.+.+...+.. +......++|+||||||||++++.+|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 35999999999998877654321 1123346999999999999999999999999999998775432
Q ss_pred -HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcC-----CC--------CC
Q 003806 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (794)
Q Consensus 404 -~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg-----~~--------~~ 469 (794)
.|.|.....+...+..+...+| ||+|||+|.+....++. ....|+..+|. |. .-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-----------~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-----------PASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-----------HHHHHHHHhccccEEEEecccccccccC
Confidence 4777777888888887776667 89999999997653321 22455555552 11 12
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHh
Q 003806 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (794)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~ 517 (794)
++|++|||+|.. .|+++|+. ||. .|.+..++.++..+|.+.|+.
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 689999999987 59999998 996 789999999999999999884
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.9e-15 Score=175.86 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=151.0
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------EEEE
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------fi~i 396 (794)
+...+.+|+||+|++++++.|...++ ..+.+..+||+||+|||||++|+++|+.+++. +-.|
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 33466789999999999998887764 23456678999999999999999999988652 1111
Q ss_pred -ecchhH--------H--HhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHH
Q 003806 397 -SASEFV--------E--LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (794)
Q Consensus 397 -s~se~~--------~--~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (794)
+|..+. + .....+...++++++.+.. ....|+||||+|.|.. ...|.||+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLK 141 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLK 141 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHH
Confidence 011110 0 0012234567777776642 2346999999999842 34578888
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCH
Q 003806 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (794)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (794)
.|+.. ..+++||.+||.++.|.+.|++ |+ .++.|..++.++..+.|+..+.+.++.+.++ .+..|++.+.| +.
T Consensus 142 tLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A~G-sm 214 (830)
T PRK07003 142 TLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAAQG-SM 214 (830)
T ss_pred HHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88743 3578889999999999999988 64 5889999999999999999998777665443 57888898888 78
Q ss_pred HHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 542 ADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
++..+++..+.... ...|+.+++..
T Consensus 215 RdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 215 RDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 88888888776443 22355554443
No 66
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.66 E-value=2.6e-15 Score=169.06 Aligned_cols=222 Identities=21% Similarity=0.294 Sum_probs=148.1
Q ss_pred CCccccc-ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecch
Q 003806 327 DTITFAD-VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (794)
Q Consensus 327 ~~vtf~D-V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se 400 (794)
+..+|++ ++|.+. ......+.....+| .....+++||||||||||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n-~~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSN-RLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcH-HHHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 5678999 556443 21222222222222 1234569999999999999999999876 67899999988
Q ss_pred hHHHhhccch-HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 401 FVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 401 ~~~~~vG~~~-~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
|...+..... ..+..+.+..+ .+++|+|||+|.+.... .....+..+++.+. .+...+||+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~----------~~~~~l~~~~n~~~---~~~~~iiits~~ 241 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE----------RTQEEFFHTFNALH---ENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH----------HHHHHHHHHHHHHH---HCCCCEEEecCC
Confidence 8765443211 11222222222 35699999999885331 11122223333321 123446666666
Q ss_pred CCCC---CCccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHH
Q 003806 480 RSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (794)
Q Consensus 480 ~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~ 554 (794)
.|.. +++.+.+ ||. ..+.+++|+.++|.+|++..+...++.++++ .++.+|....+ +.++|..+++.....
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e-~l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDE-VLEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 6644 5677877 885 4799999999999999999998877777655 47888988876 899999999998877
Q ss_pred HHhhCCccccHHHHHHHHHHHh
Q 003806 555 AGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi 576 (794)
|...+ ..|+.+.+.+++....
T Consensus 318 a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 318 ASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHHhC-CCCCHHHHHHHHHHhc
Confidence 76544 5699999988887653
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.3e-15 Score=165.23 Aligned_cols=212 Identities=18% Similarity=0.201 Sum_probs=149.0
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEE-------EE
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-------SC 396 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi-------~i 396 (794)
+...+.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|.++++... .|
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 334567899999999999988776641 245667899999999999999999998864210 00
Q ss_pred -ecchhHH----------HhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHH
Q 003806 397 -SASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (794)
Q Consensus 397 -s~se~~~----------~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (794)
+|.++.. .........++++.+.+.. ....|++|||+|.+.. ...|.||.
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk 141 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLK 141 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHHH
Confidence 1111100 0001233556666665542 2245999999998742 23467888
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCH
Q 003806 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (794)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (794)
.++.. ...+.+|.+|+.++.+.+++.+ |+ ..+.+.+|+.++..++++..+...+..++++ .++.++..+.| +.
T Consensus 142 ~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~~ 214 (363)
T PRK14961 142 TLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-SM 214 (363)
T ss_pred HHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 87743 3456777777888889999887 65 5789999999999999999888776555443 46778888876 78
Q ss_pred HHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
+++.++++.+... +...|+.+++.+++
T Consensus 215 R~al~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 215 RDALNLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 8888888776543 35678888877766
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.65 E-value=2.8e-15 Score=169.39 Aligned_cols=203 Identities=29% Similarity=0.418 Sum_probs=146.8
Q ss_pred CCCcccccccCChHhHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 326 GDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~---L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
..+.+|+|++|++++... |..++. . ..+.+++|+||||||||++|+++|...+.+|+.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~---~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIE---A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHH---c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 345789999999998666 655553 1 234479999999999999999999999999999987532
Q ss_pred HHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 403 ELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
+...++.+++.+.. ....||||||+|.+... ..+.|+..++ ...+++|++|
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~---------------~q~~LL~~le----~~~iilI~at 127 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA---------------QQDALLPHVE----DGTITLIGAT 127 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH---------------HHHHHHHHhh----cCcEEEEEeC
Confidence 33456677776642 35679999999987532 1244555555 2456777665
Q ss_pred --CCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC--CC-CCccccchhHHhhhcCCCCHHHHHHHHHHHHH
Q 003806 479 --NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--EL-PLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (794)
Q Consensus 479 --N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~--~l-~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal 553 (794)
|....+++++++ |+ ..+.+.+++.++..++++..+... ++ .+.++ .++.+++.+.| ..+.+.++++.++.
T Consensus 128 t~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~-al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 128 TENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDE-ALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred CCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 334578999998 76 688999999999999999887652 22 33322 35677887755 67777777777664
Q ss_pred HHHhhCCccccHHHHHHHHHHHh
Q 003806 554 LAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~rvi 576 (794)
. ...|+.+++.+++....
T Consensus 203 ~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 203 G-----VDSITLELLEEALQKRA 220 (413)
T ss_pred c-----cCCCCHHHHHHHHhhhh
Confidence 3 45689999998887643
No 69
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.65 E-value=1.3e-14 Score=160.08 Aligned_cols=224 Identities=23% Similarity=0.255 Sum_probs=152.0
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CcEEEEec
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSA 398 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~ 398 (794)
....++++|.++..++|...+..... ...|.+++|+||||||||+++++++.++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34456899999988877776643211 23456799999999999999999987642 57888888
Q ss_pred chhHH----------Hhh--cc-------c-hHHHHHHHHHHH-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHH
Q 003806 399 SEFVE----------LYV--GM-------G-ASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (794)
Q Consensus 399 se~~~----------~~v--G~-------~-~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (794)
..... ... |. . ...+..+++... ...+.||+|||+|.+.... ...+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~ 150 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLY 150 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHH
Confidence 64321 111 11 1 122344444443 3457899999999996221 12455
Q ss_pred HHHHhhcC-CCCCCcEEEEEEcCCCC---CCCccccCCCccc-eEEEeecCCHHhHHHHHHHHHhcC--CCCCccccchh
Q 003806 458 QLLTEMDG-FDSNSAVIVLGATNRSD---VLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLG 530 (794)
Q Consensus 458 ~LL~emdg-~~~~~~VIVIaATN~pd---~LDpALlRpGRFd-r~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~ 530 (794)
+|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..+... ...+.+++ ++
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~-l~ 227 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV-IP 227 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH-HH
Confidence 55554221 12236789999999885 57888876 664 679999999999999999988631 11122221 22
Q ss_pred H---HhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 003806 531 D---IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (794)
Q Consensus 531 ~---LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (794)
. ++..+.| ..+.+.++|+.|+..|..++...|+.+|+..|++..
T Consensus 228 ~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 228 LCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3 3444456 567778899999999988888899999999999875
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.9e-15 Score=175.61 Aligned_cols=209 Identities=17% Similarity=0.241 Sum_probs=150.5
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC------------c
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------P 392 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv------------p 392 (794)
...+.+|+||+|++.+++.|.+.+.. .+.+..+||+||+|||||++|+.+|+.+++ |
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 34567899999999999988887752 245667899999999999999999999876 1
Q ss_pred EEEE-ecc--------hhHHH--hhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHH
Q 003806 393 FISC-SAS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (794)
Q Consensus 393 fi~i-s~s--------e~~~~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (794)
+-.| +|. ++++. -...+...+|++.+.+.. ....|+||||+|.|.. ...|
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaN 142 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFN 142 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHH
Confidence 1111 111 11110 012345667777776542 3356999999999842 3468
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcC
Q 003806 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (794)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (794)
.||+.|+. ...++++|.+||.++.|.+.+++ |. .++.|..++.++..+.|+..+.+.++...++ .++.|++.+.
T Consensus 143 ALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A~ 216 (700)
T PRK12323 143 AMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAAQ 216 (700)
T ss_pred HHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 89998884 34578888999999999999998 64 5889999999999999998887766654332 4677888888
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 538 GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
| +.++..++++.+.... ...|+.+++.+
T Consensus 217 G-s~RdALsLLdQaia~~----~~~It~~~V~~ 244 (700)
T PRK12323 217 G-SMRDALSLTDQAIAYS----AGNVSEEAVRG 244 (700)
T ss_pred C-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 7 8899999988766432 23455544433
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=6.4e-15 Score=169.60 Aligned_cols=215 Identities=19% Similarity=0.260 Sum_probs=157.9
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcE----------
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------- 393 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpf---------- 393 (794)
....+-+|+|++|++.+.+.|...+. ..+.|.++||+||||||||++|+++|+.+++.-
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 34567889999999999998877553 135677899999999999999999999886521
Q ss_pred -EEE-ecchhHHH----------hhccchHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHHH
Q 003806 394 -ISC-SASEFVEL----------YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (794)
Q Consensus 394 -i~i-s~se~~~~----------~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (794)
..| +|..+.+. -...+...++++++.+... ...|++|||+|.+.. ..+|
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~n 146 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFN 146 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHH
Confidence 111 11111110 0123456788888877532 345999999998742 3467
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcC
Q 003806 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (794)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (794)
.|+..|+. +...+++|.+|+.++.+++++++ |. ..+.+..++.++..++++..+.+.++.+.++ .+..+++.+.
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s~ 220 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKSE 220 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 78888873 34567888888888899999987 54 4788999999999999999998877665444 4778888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 538 GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
| +.+++.++++.++..+... ...|+.+++.+.+
T Consensus 221 G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 221 G-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred C-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 7 8999999999887665422 2358888877665
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.4e-15 Score=172.87 Aligned_cols=205 Identities=20% Similarity=0.238 Sum_probs=151.0
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc------------
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp------------ 392 (794)
...+.+|+||+|++.+++.|...+. ..+.+..+||+||||||||++|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 3456789999999999998888764 23556789999999999999999999988652
Q ss_pred ------------EEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHH
Q 003806 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (794)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (794)
++.+++++ ..+...+|++...+.. ....|++|||+|.|.. ...
T Consensus 77 sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~ 135 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSF 135 (702)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHH
Confidence 22222211 1234567777765532 3456999999998842 245
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhc
Q 003806 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (794)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (794)
|.|+..|+.. ...+.+|.+|+.+..+.+.+++ |. .++.+.+++.++..+.++..+.+.++.+.++ .+..|++.+
T Consensus 136 NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e-AL~~IA~~S 209 (702)
T PRK14960 136 NALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD-AIWQIAESA 209 (702)
T ss_pred HHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7788888743 3566777788888888888876 64 4889999999999999999998877665544 577888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
.| +.+++.+++..+... +...|+.+++...+
T Consensus 210 ~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 210 QG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 77 888888888776543 34557777766543
No 73
>PRK06893 DNA replication initiation factor; Validated
Probab=99.64 E-value=6.2e-15 Score=153.87 Aligned_cols=212 Identities=13% Similarity=0.150 Sum_probs=138.7
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~ 402 (794)
.+..+|++++|.+... .+..+.. . +. ......++||||||||||+|++++|+++ +....+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~---~---~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRK---N---FI---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHH---H---hh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3567899999876532 1111111 1 11 1122358999999999999999999885 4455555553221
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
.. ..+.++.. ..+.+|+|||++.+... ......+..+++.+. .....++|++++..|.
T Consensus 80 ~~--------~~~~~~~~--~~~dlLilDDi~~~~~~----------~~~~~~l~~l~n~~~--~~~~~illits~~~p~ 137 (229)
T PRK06893 80 YF--------SPAVLENL--EQQDLVCLDDLQAVIGN----------EEWELAIFDLFNRIK--EQGKTLLLISADCSPH 137 (229)
T ss_pred hh--------hHHHHhhc--ccCCEEEEeChhhhcCC----------hHHHHHHHHHHHHHH--HcCCcEEEEeCCCChH
Confidence 11 11223322 23569999999987532 222334555555443 1122345566666676
Q ss_pred CCC---ccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC
Q 003806 483 VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (794)
Q Consensus 483 ~LD---pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~ 559 (794)
.++ +.|.++.++...+.++.|+.++|.+|++..+..+++.+++++ ++.|+++..| +.+.+.++++.....+. ..
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~ 214 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDKASL-QA 214 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH-hc
Confidence 654 888886666789999999999999999999987777777664 7788888887 88999999887653333 33
Q ss_pred CccccHHHHHHHH
Q 003806 560 KVVVEKIDFIHAV 572 (794)
Q Consensus 560 ~~~It~~d~~~Al 572 (794)
+..||...+.+++
T Consensus 215 ~~~it~~~v~~~L 227 (229)
T PRK06893 215 QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHh
Confidence 3468888877765
No 74
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.64 E-value=3.7e-15 Score=169.67 Aligned_cols=224 Identities=17% Similarity=0.229 Sum_probs=150.3
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecch
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se 400 (794)
.+..||++.+--+.-......+.....+|. ...+++||||||||||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 466889998843433323333333232221 13469999999999999999999875 46789999998
Q ss_pred hHHHhhccc-hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 401 FVELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 401 ~~~~~vG~~-~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
|...+.... ...+.+ |.......+.+|+|||++.+..... ...+...+++.+.. ....+||++.+
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~------~q~elf~~~n~l~~-------~~k~iIitsd~ 236 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG------VQTELFHTFNELHD-------SGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH------HHHHHHHHHHHHHH-------cCCeEEEECCC
Confidence 876554321 112222 3333233578999999998753211 11222222333222 23456666656
Q ss_pred CCCC---CCccccCCCcc--ceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHH
Q 003806 480 RSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (794)
Q Consensus 480 ~pd~---LDpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~ 554 (794)
.|.. +++.+.+ || ...+.+.+||.+.|.+|++..+...++.+++++ ++.||....| +.++|+.+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6654 4566776 66 467889999999999999999987777777664 7888988877 899999999988777
Q ss_pred HHhhCCccccHHHHHHHHHHHh
Q 003806 555 AGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi 576 (794)
+...+ ..|+.+...+++...+
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHh
Confidence 75554 5699999988887654
No 75
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6.7e-15 Score=170.00 Aligned_cols=205 Identities=17% Similarity=0.191 Sum_probs=150.9
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc------------
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp------------ 392 (794)
...+.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 34667899999999999988887742 2456679999999999999999999988653
Q ss_pred ------------EEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHH
Q 003806 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (794)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (794)
++.++++ ...+...+|++.+.+.. ....|++|||+|.|.. ...
T Consensus 78 ~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~ 136 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSF 136 (509)
T ss_pred HHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHH
Confidence 2333322 12345567777766542 2346999999999852 235
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhc
Q 003806 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (794)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (794)
|.||..|+.. ...+++|.+|+.+..+.+.+++ |. ..+.+..++..+..+.++..+.+.++.+.++ .+..+++.+
T Consensus 137 naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~-al~~ia~~s 210 (509)
T PRK14958 137 NALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA-ALDLLARAA 210 (509)
T ss_pred HHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7888888843 3467777788888888888887 54 4778998999998888888888877765443 477788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
.| +.+++.+++..+... +...|+.+++...+
T Consensus 211 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 211 NG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred CC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 76 889999999877543 23457777666554
No 76
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.62 E-value=4.5e-14 Score=157.64 Aligned_cols=227 Identities=22% Similarity=0.225 Sum_probs=152.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecchh
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF 401 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se~ 401 (794)
+....+.++|.++..++|...+..... ...|.+++|+||||||||++++.++.++ ++++++++|...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 344567799999877777666533211 2345679999999999999999999876 578899988643
Q ss_pred HH----------Hhhc-------cchH-HHHHHHHHHH-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 402 VE----------LYVG-------MGAS-RVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 402 ~~----------~~vG-------~~~~-~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
.. ...+ .... .+..+.+... ...+.||+|||+|.+....+ .+.+..++..
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~ 165 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRA 165 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHh
Confidence 21 1111 1111 2222233333 24568999999999972211 1356666666
Q ss_pred hcCCCCCCcEEEEEEcCCC---CCCCccccCCCcc-ceEEEeecCCHHhHHHHHHHHHhcCC--CCCccccchhHHhhhc
Q 003806 463 MDGFDSNSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKKE--LPLAKDIDLGDIASMT 536 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~p---d~LDpALlRpGRF-dr~I~v~~Pd~~eR~eILk~~l~~~~--l~l~~dvdl~~LA~~t 536 (794)
++... ..++.+|+++|.. +.+++.+.+ || ...|.+++++.++..+|++.++.... ..+. +-.++.+++.+
T Consensus 166 ~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~-~~~l~~i~~~~ 241 (394)
T PRK00411 166 HEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVD-DEVLDLIADLT 241 (394)
T ss_pred hhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCC-HhHHHHHHHHH
Confidence 55443 2478888888876 356777765 55 35789999999999999999886421 1122 22356666666
Q ss_pred CCC--CHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 003806 537 TGF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 537 ~Gf--SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (794)
.+. ..+.+.+++..|+..|..++...|+.+|+..|+++..
T Consensus 242 ~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 242 AREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 332 3466678889999999888889999999999998763
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.6e-14 Score=169.83 Aligned_cols=208 Identities=21% Similarity=0.269 Sum_probs=147.4
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------EEEE-e
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-S 397 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------fi~i-s 397 (794)
..+.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+++. +-.| +
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 3567899999999999988876652 2456678999999999999999999988662 1111 0
Q ss_pred cch--------hHHH--hhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhh
Q 003806 398 ASE--------FVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (794)
Q Consensus 398 ~se--------~~~~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (794)
|.. +.+. -...+...+|++.+.+.. ....|+||||+|.|.. ...|.||+.|
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLKtL 143 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTL 143 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHHHH
Confidence 101 1000 001234556776665542 3346999999999852 3568899998
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHH
Q 003806 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (794)
Q Consensus 464 dg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaD 543 (794)
+. +...+++|.+|+.+..|.+.+++ | ...+.|..++.++..+.|+..+...++...+ ..+..|+..+.| +.++
T Consensus 144 EE--Pp~~v~FIL~Tt~~~kLl~TI~S--R-C~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~-~aL~~Ia~~s~G-s~R~ 216 (647)
T PRK07994 144 EE--PPEHVKFLLATTDPQKLPVTILS--R-CLQFHLKALDVEQIRQQLEHILQAEQIPFEP-RALQLLARAADG-SMRD 216 (647)
T ss_pred Hc--CCCCeEEEEecCCccccchHHHh--h-heEeeCCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHH
Confidence 84 34567788888889999999988 6 4689999999999999999988776665433 357778888887 7899
Q ss_pred HHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 544 LANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
..+++..|... +...|+.+++..
T Consensus 217 Al~lldqaia~----~~~~it~~~v~~ 239 (647)
T PRK07994 217 ALSLTDQAIAS----GNGQVTTDDVSA 239 (647)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHH
Confidence 98998776533 222355544443
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.4e-14 Score=165.72 Aligned_cols=204 Identities=18% Similarity=0.218 Sum_probs=154.4
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--------------
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------- 391 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------------- 391 (794)
..+.+|+||+|++.+++.|...+.. .+.|.++||+||||||||++|+.+|..+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 3567899999999999988766531 356778999999999999999999987643
Q ss_pred ----------cEEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHH
Q 003806 392 ----------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (794)
Q Consensus 392 ----------pfi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (794)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.|.. ..+|
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~N 134 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFN 134 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHH
Confidence 233333321 2345678888877753 2346999999998742 3568
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcC
Q 003806 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (794)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (794)
.|+..|+.. ...+++|.+|+.++.+.+.+++ |. ..+.+..++.++..+.++..+.+.++.+.++ .+..|++.+.
T Consensus 135 aLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e-AL~lIa~~s~ 208 (491)
T PRK14964 135 ALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE-SLKLIAENSS 208 (491)
T ss_pred HHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 889988843 3567788888888889999987 54 4789999999999999999998877766554 4778888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 538 GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
| +.+++.++++.+...+. ..|+.+++.+.+
T Consensus 209 G-slR~alslLdqli~y~~----~~It~e~V~~ll 238 (491)
T PRK14964 209 G-SMRNALFLLEQAAIYSN----NKISEKSVRDLL 238 (491)
T ss_pred C-CHHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Confidence 6 88999999988876542 368888777654
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.5e-14 Score=172.66 Aligned_cols=196 Identities=20% Similarity=0.256 Sum_probs=142.1
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------EEEE
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------fi~i 396 (794)
+..++.+|+||+|++.+++.|+..+.. .+.+..+||+||||||||++|+++|+.+++. +..|
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 344668999999999999988876642 2456678999999999999999999998763 2111
Q ss_pred e-cchhHHH-------hh---ccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHH
Q 003806 397 S-ASEFVEL-------YV---GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (794)
Q Consensus 397 s-~se~~~~-------~v---G~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (794)
+ |-.+.+. +- ..+...+|++.+.+.. ....|+||||+|.|. ....|.||.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT---------------~eAqNALLK 141 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS---------------RSSFNALLK 141 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC---------------HHHHHHHHH
Confidence 1 1111110 00 1233456766665542 234599999999984 245688999
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCH
Q 003806 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (794)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (794)
.|+. +...+++|.+|+.+..|.+.+++ |. .++.|..++.++..+.|+..+...++.+.++ .+..|++.+.| +.
T Consensus 142 tLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d~ 214 (944)
T PRK14949 142 TLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-SM 214 (944)
T ss_pred HHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 9984 34567777788888889999887 53 5889999999999999999887765544332 47778888887 78
Q ss_pred HHHHHHHHHHH
Q 003806 542 ADLANLVNEAA 552 (794)
Q Consensus 542 aDL~~Lv~eAa 552 (794)
+++.+++..+.
T Consensus 215 R~ALnLLdQal 225 (944)
T PRK14949 215 RDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHH
Confidence 99999998776
No 80
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.61 E-value=7.5e-15 Score=178.68 Aligned_cols=217 Identities=21% Similarity=0.275 Sum_probs=150.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEE
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~i 396 (794)
.+-++++++|.++..+ .++..|.. +...+++|+||||||||++|+.+|..+ +.+++.+
T Consensus 182 r~~~ld~~iGr~~ei~---~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIR---QMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHH---HHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3557899999999644 44444332 223479999999999999999999875 2457888
Q ss_pred ecchhHH--HhhccchHHHHHHHHHHHh-cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 003806 397 SASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (794)
Q Consensus 397 s~se~~~--~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (794)
+.+.+.. .|.|..+.+++.+|+.++. ..++||||||||.+.+.++.. +..+ .-|-|+..+. +..+.
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d----~~n~Lkp~l~----~G~l~ 318 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD----AANLLKPALA----RGELR 318 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc----HHHHhhHHhh----CCCeE
Confidence 8777653 5788888999999999875 468899999999998654321 1111 1233444333 56789
Q ss_pred EEEEcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC----CCCCccccchhHHhhhcCCCC----
Q 003806 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGFT---- 540 (794)
Q Consensus 474 VIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~t~GfS---- 540 (794)
+|+||+..+ .+|+||.| ||. .|.|+.|+.+++.+||+.+.... ++.+.+ ..+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d-~al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILD-EAVVAAVELSHRYIPGRQ 394 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCH-HHHHHHHHHccccccccc
Confidence 999998643 48999999 996 89999999999999986665432 233333 24666777776653
Q ss_pred -HHHHHHHHHHHHHHHHhh-CCccccHHHHHH
Q 003806 541 -GADLANLVNEAALLAGRL-NKVVVEKIDFIH 570 (794)
Q Consensus 541 -gaDL~~Lv~eAal~A~r~-~~~~It~~d~~~ 570 (794)
+...-.++++|+...... ....+..+++.+
T Consensus 395 LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~ 426 (852)
T TIGR03345 395 LPDKAVSLLDTACARVALSQNATPAALEDLRR 426 (852)
T ss_pred CccHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 355667888887655432 333344444433
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.5e-14 Score=165.05 Aligned_cols=205 Identities=20% Similarity=0.262 Sum_probs=149.6
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-----------
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp----------- 392 (794)
....+.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 344678899999999999999887753 2456668999999999999999999987531
Q ss_pred ------------EEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHH
Q 003806 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (794)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (794)
++.++++ ...+...++++.+.+.. ..+.||+|||+|.+. ...+
T Consensus 75 sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~ 133 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAF 133 (504)
T ss_pred hhHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHH
Confidence 2223221 12234556766555442 345699999998763 2346
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhc
Q 003806 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (794)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (794)
+.|+..|+.. ...+++|.+|+.+..+.+.+.+ |. ..+.+..|+.++..+.++..+.+.++.+.++ .+..++..+
T Consensus 134 naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~s 207 (504)
T PRK14963 134 NALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARLA 207 (504)
T ss_pred HHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7888888743 3457777788888999999987 54 3789999999999999999998877765443 477788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
.| +.+++.++++.+... ...|+.+++.+.+
T Consensus 208 ~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 208 DG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred CC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 76 677777777766432 2368887777664
No 82
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.61 E-value=1.7e-14 Score=148.61 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=136.6
Q ss_pred CCcccccccC--ChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 003806 327 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (794)
Q Consensus 327 ~~vtf~DV~G--~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~ 401 (794)
+..+|++.++ ...+.+.+++.+. ...+.+++|+||||||||++|++++.++ +.++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3467888873 4445555555432 2346789999999999999999999876 578999999887
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
.... .+++.... .+.+|+|||+|.+.... +..+.+..++..+.. ....+|++++..+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~~---~~~~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP----------EWQEALFHLYNRVRE---AGGRLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHHH---cCCeEEEECCCCh
Confidence 6432 23333222 24599999999875321 112233444444321 2233444444344
Q ss_pred CCCC---ccccCCCcc--ceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 003806 482 DVLD---PALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (794)
Q Consensus 482 d~LD---pALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~ 556 (794)
..++ +.|.+ || ..++.+++|+.+++..+++.++.+.++++.++ .+..|+...+ -+.+++.++++++...+.
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~l~~L~~~~~-gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE-VADYLLRHGS-RDMGSLMALLDALDRASL 210 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 3332 66766 55 57899999999999999998887766666554 3677888644 489999999999876665
Q ss_pred hhCCccccHHHHHHHH
Q 003806 557 RLNKVVVEKIDFIHAV 572 (794)
Q Consensus 557 r~~~~~It~~d~~~Al 572 (794)
..+ ..|+.+.+.+.+
T Consensus 211 ~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 211 AAK-RKITIPFVKEVL 225 (226)
T ss_pred HhC-CCCCHHHHHHHh
Confidence 544 568887776654
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.4e-14 Score=169.96 Aligned_cols=211 Identities=19% Similarity=0.263 Sum_probs=152.5
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcE-------EEEe
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISCS 397 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpf-------i~is 397 (794)
...+.+|+||+|++.+++.|...+.. .+.+.++||+||+|||||++|+++|+.++++- -.|.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 34667899999999999988887652 35677899999999999999999999876531 1111
Q ss_pred -cchh-----HH-----HhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 398 -ASEF-----VE-----LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 398 -~se~-----~~-----~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
|..+ .+ .....+...++++++.+.. ....||||||+|.|.. ..+|.||..
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLKt 142 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLKT 142 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHHH
Confidence 1100 00 0112344678888776542 2346999999998742 345788888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHH
Q 003806 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (794)
|+.. ...+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++..+.|+..+.+.++.+.++ .+..|++.+.| +.+
T Consensus 143 LEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e-AL~~Ia~~A~G-slR 215 (709)
T PRK08691 143 LEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP-ALQLLGRAAAG-SMR 215 (709)
T ss_pred HHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHhCC-CHH
Confidence 8743 3467778888888889888876 64 4678889999999999999998877766443 57888888876 899
Q ss_pred HHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
++.++++.+.... ...|+.+++...+
T Consensus 216 dAlnLLDqaia~g----~g~It~e~V~~lL 241 (709)
T PRK08691 216 DALSLLDQAIALG----SGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHhc----CCCcCHHHHHHHH
Confidence 9999998876542 3457776666654
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.60 E-value=4.4e-14 Score=153.90 Aligned_cols=209 Identities=19% Similarity=0.221 Sum_probs=136.6
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CcEEEEecch
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASE 400 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg-----vpfi~is~se 400 (794)
..+.+|++++|.+++++.|...+.. ....++||+||||||||++|+++++++. .+++.+++++
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 4567899999999999988876541 1223699999999999999999999873 4678888877
Q ss_pred hHHHh-------------hcc-------chHHHHHHHHHHHh-----cCCEEEEEcccchhhhccCCCccccchHHHHHH
Q 003806 401 FVELY-------------VGM-------GASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (794)
Q Consensus 401 ~~~~~-------------vG~-------~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (794)
+.... .+. ....++.+.+.... ..+.+|+|||+|.+... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---------------~ 141 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---------------A 141 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH---------------H
Confidence 64321 010 11223333333322 23459999999987421 1
Q ss_pred HHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhh
Q 003806 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (794)
Q Consensus 456 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (794)
.+.|...++.... ...+|.+++.+..+.+.|.+ |+ ..+.+.+|+.++..++++..+.+.++.+.++ .++.++..
T Consensus 142 ~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~~~ 215 (337)
T PRK12402 142 QQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIAYY 215 (337)
T ss_pred HHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 2334444443332 23445556566677777876 54 4789999999999999999998877765544 57778887
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 003806 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 536 t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (794)
+.| +.+++ ++.....+. ....|+.+++.+++.
T Consensus 216 ~~g-dlr~l---~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 216 AGG-DLRKA---ILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred cCC-CHHHH---HHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 744 44544 444433332 223699988887663
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.60 E-value=1.8e-14 Score=172.04 Aligned_cols=213 Identities=21% Similarity=0.291 Sum_probs=144.8
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+...+.+|+|++|++.+......+...+.. ....+++||||||||||++|+++|+..+.+|+.+++...
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 3444578899999999987542222222221 223469999999999999999999999999988887521
Q ss_pred HHhhccchHHHHHHHHHHH-----hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 003806 403 ELYVGMGASRVRDLFARAK-----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (794)
+...+++.+..+. .....||||||+|.+.... .+.|+..++ +..+++|++
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q---------------QdaLL~~lE----~g~IiLI~a 143 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ---------------QDALLPWVE----NGTITLIGA 143 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH---------------HHHHHHHhc----CceEEEEEe
Confidence 1233444444442 1345699999999885321 134555554 245777776
Q ss_pred cC--CCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHh-------cCCCCCccccchhHHhhhcCCCCHHHHHHHH
Q 003806 478 TN--RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (794)
Q Consensus 478 TN--~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~-------~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv 548 (794)
|+ ....+++++++ | ...+.+++++.+++..+++..+. ..++.++++ .++.|++.+.| +.+++.+++
T Consensus 144 TTenp~~~l~~aL~S--R-~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~de-aL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 144 TTENPYFEVNKALVS--R-SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPE-AEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred cCCChHhhhhhHhhc--c-ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHH-HHHHHHHhCCC-CHHHHHHHH
Confidence 63 33568899987 4 34789999999999999999887 233444443 36778888865 788899998
Q ss_pred HHHHHHHHhhC--CccccHHHHHHHHHHH
Q 003806 549 NEAALLAGRLN--KVVVEKIDFIHAVERS 575 (794)
Q Consensus 549 ~eAal~A~r~~--~~~It~~d~~~Al~rv 575 (794)
+.|+..+.... ...|+.+++.+++.+.
T Consensus 219 e~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 219 ELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 88775442222 2337888888877654
No 86
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.8e-14 Score=166.73 Aligned_cols=206 Identities=21% Similarity=0.264 Sum_probs=153.1
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-----------
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp----------- 392 (794)
....+.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+.+|+.++++
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 334677899999999999988887653 2456779999999999999999999987532
Q ss_pred -------------EEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHH
Q 003806 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (794)
Q Consensus 393 -------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (794)
++.++++ .+.+...++++.+.+.. ....|++|||+|.|.. ..
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a 135 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GA 135 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HH
Confidence 2222221 12345678888877653 2345999999998842 34
Q ss_pred HHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhh
Q 003806 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (794)
Q Consensus 456 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (794)
.|.|+..++. +...+++|.+|+.++.+++.+++ |.. .+.+.+|+..+..+.++..+.+.++.+.++ .+..+++.
T Consensus 136 ~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~-al~~ia~~ 209 (559)
T PRK05563 136 FNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDE-ALRLIARA 209 (559)
T ss_pred HHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 6788888874 34567777778888999999987 654 688999999999999999998877766543 47778888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 536 t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
+.| +.+++.+++..+...+ ...|+.+++...+
T Consensus 210 s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 210 AEG-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 877 8888888888776543 3457777666543
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.59 E-value=3.5e-14 Score=147.19 Aligned_cols=202 Identities=17% Similarity=0.174 Sum_probs=136.4
Q ss_pred CCcccccccC--ChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 003806 327 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (794)
Q Consensus 327 ~~vtf~DV~G--~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~ 401 (794)
++.+|+++++ .+.+...++++.. +...+.+++|+||||||||+||++++.++ +.+++++++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 4578999773 3444444444332 23345689999999999999999999865 678899988776
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC-
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR- 480 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~- 480 (794)
.... . ....+.+|+|||+|.+... ....+..++..+. .+...++|.+++.
T Consensus 82 ~~~~------------~--~~~~~~~liiDdi~~l~~~------------~~~~L~~~~~~~~---~~~~~~vl~~~~~~ 132 (227)
T PRK08903 82 LLAF------------D--FDPEAELYAVDDVERLDDA------------QQIALFNLFNRVR---AHGQGALLVAGPAA 132 (227)
T ss_pred HHHH------------h--hcccCCEEEEeChhhcCch------------HHHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 4321 1 1223569999999987421 1223334444332 2333334444443
Q ss_pred CC--CCCccccCCCcc--ceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 003806 481 SD--VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (794)
Q Consensus 481 pd--~LDpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~ 556 (794)
|. .+.+.|.+ || ...+.+++|+.+++..+++.++...++.++++ .++.+++..+| +.+++.++++.....|.
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~-al~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE-VPDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 31 34566665 66 57899999999999999998887777777655 47778886665 89999999998665554
Q ss_pred hhCCccccHHHHHHHHH
Q 003806 557 RLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 557 r~~~~~It~~d~~~Al~ 573 (794)
. .+..|+...+.+++.
T Consensus 209 ~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 E-QKRPVTLPLLREMLA 224 (227)
T ss_pred H-hCCCCCHHHHHHHHh
Confidence 4 447899888887764
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.59 E-value=3.8e-14 Score=155.78 Aligned_cols=207 Identities=20% Similarity=0.262 Sum_probs=150.2
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-----------
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp----------- 392 (794)
+..++.+|+|++|++++++.|.+.+.. .+.|..+||+||||+|||++|+++|+.+..+
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 344678999999999999988876642 2456779999999999999999999887532
Q ss_pred -------------EEEEecchhHHHhhccchHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHH
Q 003806 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (794)
Q Consensus 393 -------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (794)
++.+++.+ ..+...++++++.+... ...||+|||+|.+.. ..
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~ 133 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SA 133 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HH
Confidence 22222210 12344577777776532 235999999998742 24
Q ss_pred HHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhh
Q 003806 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (794)
Q Consensus 456 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (794)
.+.|+..++.. ...+++|.+|+.++.+.+++.+ |+ ..+.+++|+..+..++++.++.+.+++++++ .+..++..
T Consensus 134 ~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~~ 207 (355)
T TIGR02397 134 FNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIARA 207 (355)
T ss_pred HHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 57788888643 3467777788888888888887 65 4789999999999999999998877665543 46667777
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 003806 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 536 t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (794)
+.| +.+.+.+.++.+...+ ...|+.+++.+++.
T Consensus 208 ~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 765 7777777777766553 23489988887763
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.4e-14 Score=165.64 Aligned_cols=210 Identities=16% Similarity=0.234 Sum_probs=150.0
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc------------E
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------F 393 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp------------f 393 (794)
..+.+|+||+|++.+++.|...+.. .+.|..+||+||+|||||++|+++|+.+++. +
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 3567899999999999988887652 2456678999999999999999999988651 1
Q ss_pred EEE-ecchh--------HHH--hhccchHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHHHH
Q 003806 394 ISC-SASEF--------VEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (794)
Q Consensus 394 i~i-s~se~--------~~~--~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (794)
-.| +|..+ .+. ....+...+|++.+.+... ...|++|||+|.|.. ...|.
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~Na 143 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAFNA 143 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHHHH
Confidence 111 11111 110 0112345678877766432 235999999999852 23678
Q ss_pred HHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCC
Q 003806 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (794)
Q Consensus 459 LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (794)
||..++. ....+++|.+|+.+..+.+.+++ |. .++.+..++.++..+.++..+.+.++.+.++ .+..|++.+.|
T Consensus 144 LLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s~G 217 (618)
T PRK14951 144 MLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAARG 217 (618)
T ss_pred HHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 8888874 33567777788888888888887 53 5889999999999999999988877765443 47888888877
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 539 fSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
+.+++.+++..+.... ...|+.+++.+.+
T Consensus 218 -slR~al~lLdq~ia~~----~~~It~~~V~~~L 246 (618)
T PRK14951 218 -SMRDALSLTDQAIAFG----SGQLQEAAVRQML 246 (618)
T ss_pred -CHHHHHHHHHHHHHhc----CCCcCHHHHHHHH
Confidence 8889988887766542 3457776666544
No 90
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=3.7e-14 Score=164.97 Aligned_cols=223 Identities=20% Similarity=0.237 Sum_probs=148.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecchh
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF 401 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se~ 401 (794)
+..+|++++.-+.-......+.....++. .....++|||++|||||+|++++++++ +..++++++.+|
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 56789998754432211112222222211 122349999999999999999999976 578899999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC-
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR- 480 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~- 480 (794)
.+.+.........+.|.... ..+++|+||||+.+..+. .....+..+++.+. .+.+-+|| |+|.
T Consensus 356 ~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke----------~tqeeLF~l~N~l~---e~gk~III-TSd~~ 420 (617)
T PRK14086 356 TNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE----------STQEEFFHTFNTLH---NANKQIVL-SSDRP 420 (617)
T ss_pred HHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH----------HHHHHHHHHHHHHH---hcCCCEEE-ecCCC
Confidence 87665433222223344322 346799999999885332 11122233333332 12233444 5544
Q ss_pred C---CCCCccccCCCcc--ceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 481 S---DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 481 p---d~LDpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
| ..+++.|.+ || ...+.+..||.+.|.+||+.++...++.+.+++ ++.|+.+..+ +.++|+.+++.....+
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 3 356888888 77 567789999999999999999998888777664 7778887765 7899999999877666
Q ss_pred HhhCCccccHHHHHHHHHHHh
Q 003806 556 GRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi 576 (794)
...+ ..|+.+.+.+++...+
T Consensus 497 ~~~~-~~itl~la~~vL~~~~ 516 (617)
T PRK14086 497 SLNR-QPVDLGLTEIVLRDLI 516 (617)
T ss_pred HhhC-CCCCHHHHHHHHHHhh
Confidence 5544 5689888888886544
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.58 E-value=3.1e-14 Score=153.35 Aligned_cols=215 Identities=28% Similarity=0.400 Sum_probs=144.1
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc---EEEEecc
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSAS 399 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp---fi~is~s 399 (794)
.+...+-+++|.+|++++..+ ..++..+-.. .+. ..++||||||||||+||+.++....-+ |+.+++.
T Consensus 129 aermRPktL~dyvGQ~hlv~q-~gllrs~ieq-------~~i-pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------NRI-PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhhcCcchHHHhcchhhhcCc-chHHHHHHHc-------CCC-CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 344566789999999987654 2232221110 122 359999999999999999999988766 8887763
Q ss_pred hhHHHhhccchHHHHHHHHHHHh-----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 003806 400 EFVELYVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (794)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (794)
......+|++|++++. ....|||||||+.+.+..++- ||-.++ +..|++
T Consensus 200 -------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~---------------fLP~VE----~G~I~l 253 (554)
T KOG2028|consen 200 -------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDT---------------FLPHVE----NGDITL 253 (554)
T ss_pred -------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhc---------------ccceec----cCceEE
Confidence 3455779999999975 345799999999998766532 233222 466888
Q ss_pred EEEc--CCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHh---cC---CCCCcc------ccchhHHhhhcCCCC
Q 003806 475 LGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS---KK---ELPLAK------DIDLGDIASMTTGFT 540 (794)
Q Consensus 475 IaAT--N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~---~~---~l~l~~------dvdl~~LA~~t~GfS 540 (794)
|+|| |..-.|..+|++++ +++.+.....++...||..-+. +. .-+++. +--++.++..+.|=.
T Consensus 254 IGATTENPSFqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHhcc---ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 9888 66678999999843 4888999999999999987544 11 111211 112566788887744
Q ss_pred HHHHHHHHHHH-HHHHHhh---CCccccHHHHHHHHHHHh
Q 003806 541 GADLANLVNEA-ALLAGRL---NKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 541 gaDL~~Lv~eA-al~A~r~---~~~~It~~d~~~Al~rvi 576 (794)
.+.|..| +-+ .+...|. .+..++.+|+.+++.+..
T Consensus 331 R~aLN~L-ems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 331 RAALNAL-EMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHH-HHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 4443332 222 2222333 346788999999987754
No 92
>PLN03025 replication factor C subunit; Provisional
Probab=99.58 E-value=3.3e-14 Score=155.38 Aligned_cols=202 Identities=20% Similarity=0.216 Sum_probs=136.6
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CcEEEEecc
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS 399 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg-----vpfi~is~s 399 (794)
...+.+|+|++|++++++.|+.++.. .+.| ++||+||||||||++|+++|+++. ..++.++.+
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 34677899999999999988876541 1223 599999999999999999999873 235666665
Q ss_pred hhHHHhhccchHHHHHHHHHHH-------hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcE
Q 003806 400 EFVELYVGMGASRVRDLFARAK-------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (794)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~Ar-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 472 (794)
+.. +...+++..+... ...+.||+|||+|.+.... -+.|+..|+.+. ...
T Consensus 74 d~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a---------------q~aL~~~lE~~~--~~t 130 (319)
T PLN03025 74 DDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA---------------QQALRRTMEIYS--NTT 130 (319)
T ss_pred ccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH---------------HHHHHHHHhccc--CCc
Confidence 432 1223444333211 1235799999999985321 244555555333 234
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHH
Q 003806 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (794)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa 552 (794)
.+|.+||.++.+.++|++ |. ..+.++.|+.++....++..+.+.++.+.++ .++.++..+.| +.+.+.+.++.
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~-~l~~i~~~~~g-DlR~aln~Lq~-- 203 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPE-GLEAIIFTADG-DMRQALNNLQA-- 203 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHH--
Confidence 566788888888899987 54 4789999999999999999998888777655 47777777655 44555555542
Q ss_pred HHHHhhCCccccHHHHHHH
Q 003806 553 LLAGRLNKVVVEKIDFIHA 571 (794)
Q Consensus 553 l~A~r~~~~~It~~d~~~A 571 (794)
.+ .+...|+.+++...
T Consensus 204 -~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 204 -TH--SGFGFVNQENVFKV 219 (319)
T ss_pred -HH--hcCCCCCHHHHHHH
Confidence 22 12345777766543
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.58 E-value=9.4e-14 Score=145.65 Aligned_cols=206 Identities=14% Similarity=0.130 Sum_probs=135.4
Q ss_pred CCccccccc-C-ChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 003806 327 DTITFADVA-G-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (794)
Q Consensus 327 ~~vtf~DV~-G-~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~ 401 (794)
+..+|++.+ | ...+...++.+.. . ..+..++||||||||||+|+++++.++ +..+.+++..+.
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 456788887 4 3444444444321 1 123479999999999999999999875 445566665543
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCc-EEEEEEcCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 480 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~-VIVIaATN~ 480 (794)
.... ..+.+.+. . ..+|+|||++.+..+ +..++.+..+++.+- .+.+ .+++++++.
T Consensus 85 ~~~~-----~~~~~~~~---~--~dlliiDdi~~~~~~----------~~~~~~lf~l~n~~~---e~g~~~li~ts~~~ 141 (235)
T PRK08084 85 AWFV-----PEVLEGME---Q--LSLVCIDNIECIAGD----------ELWEMAIFDLYNRIL---ESGRTRLLITGDRP 141 (235)
T ss_pred hhhh-----HHHHHHhh---h--CCEEEEeChhhhcCC----------HHHHHHHHHHHHHHH---HcCCCeEEEeCCCC
Confidence 2211 11222222 1 248999999988532 222334444444432 1222 355555566
Q ss_pred CCC---CCccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 481 pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
|.. +.|.|++ |+. .++.+.+|+.+++.++++.++..+++.+++++ ++.|+++..+ +.+.+.++++.....+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 655 5789988 774 78999999999999999998887777776664 7888888887 8999999999864333
Q ss_pred HhhCCccccHHHHHHHH
Q 003806 556 GRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 556 ~r~~~~~It~~d~~~Al 572 (794)
...+..||...+.+++
T Consensus 218 -l~~~~~it~~~~k~~l 233 (235)
T PRK08084 218 -ITAQRKLTIPFVKEIL 233 (235)
T ss_pred -HhcCCCCCHHHHHHHH
Confidence 3334558888777765
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.57 E-value=9e-14 Score=150.85 Aligned_cols=206 Identities=19% Similarity=0.268 Sum_probs=132.5
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
+...+.+|+|++|++++++.+...+. ..+.|..+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 44567899999999999998888764 1245666777999999999999999999999999998876 11
Q ss_pred HhhccchHHHHHHHHHHH-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 404 LYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
.......+.+...... ...++||+|||+|.+... +....+..+ ++... .++.+|.+||.++
T Consensus 81 --~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~~L~~~---le~~~--~~~~~Ilt~n~~~ 142 (316)
T PHA02544 81 --IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQRHLRSF---MEAYS--KNCSFIITANNKN 142 (316)
T ss_pred --HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHHHHHHHH---HHhcC--CCceEEEEcCChh
Confidence 1111111222111111 135789999999987311 112333333 44322 4567888999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHh-------cCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~-------~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
.+++++++ ||. .+.++.|+.+++.++++.++. +.+.++.++ .+..++....| |++.+++.....+
T Consensus 143 ~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~~~~ 214 (316)
T PHA02544 143 GIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQRYA 214 (316)
T ss_pred hchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 99999998 775 788999999999887765433 234444332 24556655443 4555555444333
Q ss_pred HhhCCccccHHHHHH
Q 003806 556 GRLNKVVVEKIDFIH 570 (794)
Q Consensus 556 ~r~~~~~It~~d~~~ 570 (794)
. ...++..++..
T Consensus 215 ~---~~~i~~~~l~~ 226 (316)
T PHA02544 215 S---TGKIDAGILSE 226 (316)
T ss_pred c---cCCCCHHHHHH
Confidence 2 23466555443
No 95
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=6e-14 Score=159.83 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=133.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccC
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~ 441 (794)
..+++||||||+|||+|++++++++ +.+++++++.+|...+...-...-.+.|.... ..+++|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999875 68899999988766543221111112344333 345699999999885332
Q ss_pred CCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC---CCCccccCCCccc--eEEEeecCCHHhHHHHHHHHH
Q 003806 442 GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHV 516 (794)
Q Consensus 442 ~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l 516 (794)
...++...++|.+.. ....+|+++++.|. .+++.|.+ ||. ..+.+.+|+.++|.+||+..+
T Consensus 219 -----~~qeelf~l~N~l~~-------~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 219 -----ATQEEFFHTFNSLHT-------EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred -----hhHHHHHHHHHHHHH-------CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 122333444444442 12345555555553 46788887 885 788999999999999999999
Q ss_pred hcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHH---HHHhhCCccccHHHHHHHHHHHh
Q 003806 517 SKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL---LAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 517 ~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal---~A~r~~~~~It~~d~~~Al~rvi 576 (794)
...++.+++++ ++.++....+ +.++|.+.++..+. .+.. ....|+.+++.+++...+
T Consensus 285 ~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 285 EALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-SHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHhh
Confidence 88777666553 6667776665 78899988888753 2222 235689999999997654
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.7e-14 Score=162.53 Aligned_cols=210 Identities=19% Similarity=0.248 Sum_probs=147.7
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------EEEEe-
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS- 397 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------fi~is- 397 (794)
..+.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++. +-.|+
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3557899999999999988877652 2456678999999999999999999988652 11110
Q ss_pred cchh-----HH-----HhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhh
Q 003806 398 ASEF-----VE-----LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (794)
Q Consensus 398 ~se~-----~~-----~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (794)
|..+ .+ .-...+...++++.+.+.. ....|++|||+|.+.. ...|.||..+
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~L 143 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKTL 143 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHHH
Confidence 0000 00 0012234567777776643 2345999999998842 3457888888
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHH
Q 003806 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (794)
Q Consensus 464 dg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaD 543 (794)
+. ....+++|.+|+.++.+.+.+++ |. ..+.+..++.++..+.+...+.+.++.+.+ ..+..+++.+.| +.++
T Consensus 144 Ee--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~-~al~~la~~s~G-slr~ 216 (527)
T PRK14969 144 EE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDA-TALQLLARAAAG-SMRD 216 (527)
T ss_pred hC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHH
Confidence 85 33567777778878888888876 53 588999999999999998888776665433 346778888776 7889
Q ss_pred HHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 544 LANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
+.++++.+... +...|+.+++...+
T Consensus 217 al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 217 ALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 98998877654 23456666655543
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.5e-13 Score=159.29 Aligned_cols=211 Identities=20% Similarity=0.295 Sum_probs=145.5
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------cEEEEe
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCS 397 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------pfi~is 397 (794)
...+.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++ |+-.|.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 34567899999999999988776642 245667999999999999999999998754 111110
Q ss_pred -cc--------hhHH--HhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 398 -AS--------EFVE--LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 398 -~s--------e~~~--~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
|. ++.+ .....+...++++.+.+.. ....|++|||+|.+.. ...|.||..
T Consensus 78 sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK~ 142 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLKT 142 (546)
T ss_pred HHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHHHH
Confidence 00 0000 0011233456666665542 2346999999998742 345788888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHH
Q 003806 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (794)
|+. ....+++|.+|+.+..+.+.+++ |. ..+.+..++.++..+.++..+.+.++.+.+ ..+..++..+.| +.+
T Consensus 143 LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~-~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 143 LEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDE-QSLEYIAYHAKG-SLR 215 (546)
T ss_pred Hhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHH
Confidence 874 33556777777778888888877 53 589999999999999999888877665443 356778888866 788
Q ss_pred HHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
++.++++.+..... ..|+.+++.+++
T Consensus 216 ~alnlLek~i~~~~----~~It~~~V~~~l 241 (546)
T PRK14957 216 DALSLLDQAISFCG----GELKQAQIKQML 241 (546)
T ss_pred HHHHHHHHHHHhcc----CCCCHHHHHHHH
Confidence 88888887765432 346666666543
No 98
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.55 E-value=6.3e-14 Score=171.01 Aligned_cols=166 Identities=25% Similarity=0.376 Sum_probs=125.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEE
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~i 396 (794)
.+-++++++|.++..+ .+++-|.. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~---~~i~iL~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIR---RTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHH---HHHHHHhc---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3457899999998544 44443332 223469999999999999999999987 7889999
Q ss_pred ecchhHH--HhhccchHHHHHHHHHHH-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 003806 397 SASEFVE--LYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (794)
Q Consensus 397 s~se~~~--~~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (794)
+.+.+.. .|.|..+.+++.+|+.+. ...|+||||||+|.+.+..... +..+. -|-|...+ .+..+.
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~----~~~lkp~l----~~g~l~ 309 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDA----GNMLKPAL----ARGELH 309 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhH----HHHhcchh----hcCCCe
Confidence 8888763 588888999999999864 4578999999999997654321 22221 12222222 356799
Q ss_pred EEEEcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc
Q 003806 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (794)
Q Consensus 474 VIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (794)
+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+..+
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 999999876 48999999 998 6889999999999999877654
No 99
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=9.7e-14 Score=162.83 Aligned_cols=204 Identities=18% Similarity=0.244 Sum_probs=150.4
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc------------
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp------------ 392 (794)
...+.+|+||+|++++++.|...+.. .+.|..+||+||+|||||++|+++|+.++++
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 34567899999999999988887642 2467779999999999999999999987642
Q ss_pred ------------EEEEecchhHHHhhccchHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHH
Q 003806 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (794)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (794)
++.+++. ...+...++++.+.+... ...|++|||+|.|.. ...
T Consensus 78 ~c~~i~~g~~~d~~eid~~------s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~ 136 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGA------SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAF 136 (576)
T ss_pred HHHHHhcCCCCCeeeeecc------CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHH
Confidence 2222211 122345677777766532 235999999998852 245
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhc
Q 003806 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (794)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (794)
|.|+..|+. +...+++|.+|+.++.|.+.+++ |. ..+.|..++..+....+...+.+.++.+.++ .+..+++.+
T Consensus 137 naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~-al~~la~~a 210 (576)
T PRK14965 137 NALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDA-ALALVARKG 210 (576)
T ss_pred HHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHc
Confidence 888888884 34577888888889999999987 53 4788999999999999998888877766544 577788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHH
Q 003806 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (794)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (794)
.| +.+++.++++.+..... ..|+.+++...
T Consensus 211 ~G-~lr~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 211 DG-SMRDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred CC-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 77 77888888877665542 24777776554
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.6e-13 Score=152.55 Aligned_cols=212 Identities=19% Similarity=0.261 Sum_probs=146.1
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh--
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF-- 401 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~-- 401 (794)
+...+.+|+|++|++.+++.+...+.. .+.|.++|||||||+|||++|+++|..+..+.....+..+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 344678999999999999887776642 2456789999999999999999999987542211111000
Q ss_pred ----HHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 003806 402 ----VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (794)
Q Consensus 402 ----~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (794)
.+.....+...++++++.+.. ..+.||+|||+|.+.. ..++.++..++.. ....+
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~--~~~~~ 140 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEP--PAHAI 140 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCC--CCceE
Confidence 001111234667777877653 2346999999997742 2356777777642 23456
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHH
Q 003806 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (794)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal 553 (794)
+|.+|+.+..+.+++.+ |+ ..+.+..|+.++...++...+.+.++.++++ .++.++..+.| +.+.+.+.++....
T Consensus 141 ~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~~ 215 (367)
T PRK14970 141 FILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVVT 215 (367)
T ss_pred EEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 66667777888899887 54 3688999999999999999888877766554 57777877665 67777777776665
Q ss_pred HHHhhCCccccHHHHHHHH
Q 003806 554 LAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al 572 (794)
.+. .. |+.+++...+
T Consensus 216 y~~---~~-it~~~v~~~~ 230 (367)
T PRK14970 216 FCG---KN-ITRQAVTENL 230 (367)
T ss_pred hcC---CC-CCHHHHHHHh
Confidence 542 22 7877766655
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=160.91 Aligned_cols=212 Identities=20% Similarity=0.211 Sum_probs=149.5
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------EEEE-
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC- 396 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------fi~i- 396 (794)
...+-+|+||+|++.+++.|+..+.. .+.|..+||+||+|||||++|+++|+.+++. +-.|
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 34567899999999999988887642 3466678999999999999999999987642 1111
Q ss_pred ecchhH----------H--HhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHH
Q 003806 397 SASEFV----------E--LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (794)
Q Consensus 397 s~se~~----------~--~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (794)
+|-.+. + .-...+...++++.+.+.. ....|++|||+|.|.. ...|.||
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALL 139 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALL 139 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHH
Confidence 111110 0 0011234566666555532 2345999999998842 2568889
Q ss_pred HhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCC
Q 003806 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (794)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfS 540 (794)
..|+. ....+++|.+|+.++.|.+++++ | ..++.|..++.++..+.++..+.+.++.+.++ .+..+++.+.| +
T Consensus 140 K~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~G-d 212 (584)
T PRK14952 140 KIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGGG-S 212 (584)
T ss_pred HHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 88884 34577888888888999999987 5 45899999999999999999998877655443 46667776665 7
Q ss_pred HHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
.+++.++++.++..+ +...|+.+++...+
T Consensus 213 lR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 213 PRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 888889888876443 23457776665553
No 102
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.2e-13 Score=161.22 Aligned_cols=212 Identities=21% Similarity=0.294 Sum_probs=152.9
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEE---EEecch
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SCSASE 400 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi---~is~se 400 (794)
...++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|..+.++-. .-.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 345678999999999999988887752 245677999999999999999999998765311 011211
Q ss_pred hHH-------Hh-----hccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc
Q 003806 401 FVE-------LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (794)
Q Consensus 401 ~~~-------~~-----vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd 464 (794)
+.. .+ ...+...+|++.+.+.. ....|++|||+|.|.. ...+.||..|+
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLE 143 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLE 143 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhh
Confidence 111 00 01235567888877764 3346999999998742 25688898888
Q ss_pred CCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHH
Q 003806 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (794)
Q Consensus 465 g~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL 544 (794)
. +...+++|.+|+.++.|.+.+++ |+ .++.+.+|+.++..++++..+.+.++.+.++ .+..+|..+.| +.+++
T Consensus 144 E--PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~e-Al~~LA~lS~G-slR~A 216 (725)
T PRK07133 144 E--PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKN-ALKLIAKLSSG-SLRDA 216 (725)
T ss_pred c--CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 4 34567888888889999999987 65 4899999999999999998887776654433 36778888876 78888
Q ss_pred HHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 545 ANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 545 ~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
.++++.++... ...|+.+++.+.+
T Consensus 217 lslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 217 LSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 88888765443 2337777776654
No 103
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.54 E-value=1.1e-13 Score=155.97 Aligned_cols=182 Identities=29% Similarity=0.358 Sum_probs=116.7
Q ss_pred cccc-ccCChHhHHHHHHHHHH-hcChhHHhh--hCC-CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-
Q 003806 330 TFAD-VAGVDEAKEELEEIVEF-LRSPDKYIR--LGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE- 403 (794)
Q Consensus 330 tf~D-V~G~devK~~L~eiV~~-Lk~p~~~~~--lg~-~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~- 403 (794)
.+++ |+|++++|+.|...+.. ++.-..... -.. ....++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3443 89999999999765532 111100000 011 23467999999999999999999999999999999988764
Q ss_pred HhhccchHH-HHHHHHHH----HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-----------
Q 003806 404 LYVGMGASR-VRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------- 467 (794)
Q Consensus 404 ~~vG~~~~~-vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------- 467 (794)
.|+|..... +..++..+ ....++||||||||.+.....+.. ...+-..+.+.+.||..|++-.
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~-~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC-cCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 577765444 34444332 234678999999999987632210 0111111245567777776421
Q ss_pred CCCcEEEEEEcCCCC----------------------------------------------------CCCccccCCCccc
Q 003806 468 SNSAVIVLGATNRSD----------------------------------------------------VLDPALRRPGRFD 495 (794)
Q Consensus 468 ~~~~VIVIaATN~pd----------------------------------------------------~LDpALlRpGRFd 495 (794)
.....++|.|+|-.. -+.|+++ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 112345666655410 0234444 5999
Q ss_pred eEEEeecCCHHhHHHHHHH
Q 003806 496 RVVMVETPDKIGREAILKV 514 (794)
Q Consensus 496 r~I~v~~Pd~~eR~eILk~ 514 (794)
.++.+.+.+.++..+|+..
T Consensus 305 ~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 305 VVATLEELDEEALVRILTE 323 (412)
T ss_pred eeeecCCCCHHHHHHHHHH
Confidence 9999999999999999873
No 104
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=1.1e-13 Score=155.19 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=129.0
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcE----------------
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------------- 393 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpf---------------- 393 (794)
.|++|+|++.+++.|+..+..-+.+ +...+.+.|.++||+||||+|||++|+++|..+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 5899999999999999998764332 3334566788999999999999999999999765431
Q ss_pred -------EEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 394 -------ISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 394 -------i~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
..+.... ...+...+|++++.+.. ....|+||||+|.+... ..|.||..
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLLk~ 140 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALLKA 140 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHHHH
Confidence 1111110 11234568888887764 23469999999998532 34778888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHH
Q 003806 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (794)
|+... .++++|.+|+.++.|.|++++ |. ..+.|++|+.++..++|.... ++ . +.....++..+.|..+.
T Consensus 141 LEep~--~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~--~-~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 141 VEEPP--PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV--D-PETARRAARASQGHIGR 209 (394)
T ss_pred hhcCC--CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC--C-HHHHHHHHHHcCCCHHH
Confidence 87433 344555555558999999998 64 589999999988777776321 22 2 22356778888887665
Q ss_pred HHHHHH
Q 003806 543 DLANLV 548 (794)
Q Consensus 543 DL~~Lv 548 (794)
.+.-+.
T Consensus 210 A~~l~~ 215 (394)
T PRK07940 210 ARRLAT 215 (394)
T ss_pred HHHHhc
Confidence 554443
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1e-13 Score=161.96 Aligned_cols=206 Identities=19% Similarity=0.229 Sum_probs=146.0
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-----------
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp----------- 392 (794)
+...+.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 345678999999999999988887642 2345679999999999999999999988653
Q ss_pred -------------EEEEecchhHHHhhccchHHHHHHHHHHH----hcCCEEEEEcccchhhhccCCCccccchHHHHHH
Q 003806 393 -------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (794)
Q Consensus 393 -------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (794)
++.+++.. ..+...++.+.+.+. .....||||||+|.|.. ..
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a 135 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---------------EA 135 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------HH
Confidence 22222210 112344555433332 23456999999999842 23
Q ss_pred HHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhh
Q 003806 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (794)
Q Consensus 456 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (794)
.|.|+..|+.. ...+++|.+||.++.+.+.+++ |+ ..+.|..++.++..++|+..+.+.++.+.++ .++.+++.
T Consensus 136 ~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~e-al~lIA~~ 209 (624)
T PRK14959 136 FNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPA-AVRLIARR 209 (624)
T ss_pred HHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 57888888743 3467888888888888888887 64 3788999999999999998888766655444 46778887
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 536 t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
+.| +.+++.++++.++ + .+...|+.+++..++
T Consensus 210 s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 210 AAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred cCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 776 6677777777553 2 244468887776655
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.54 E-value=1.2e-13 Score=168.25 Aligned_cols=202 Identities=23% Similarity=0.335 Sum_probs=146.2
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEec
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSA 398 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~is~ 398 (794)
-.+++++|.++..+.+.+++. .+.+.+++|+||||||||++|+++|.+. +.+++.+++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 458899999997777666542 2345689999999999999999999876 478999999
Q ss_pred chhHH--HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 003806 399 SEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (794)
Q Consensus 399 se~~~--~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (794)
+.+.. .|.|..+.+++.+|+.++...++||||||||.+.+..+.. +.. ..-|-|...+. +..+.+|+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~----~~a~lLkp~l~----rg~l~~Ig 312 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAI----DAANILKPALA----RGELQCIG 312 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Ccc----cHHHHhHHHHh----CCCcEEEE
Confidence 88773 6788889999999999988889999999999998654321 111 11222333332 46789999
Q ss_pred EcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc----CCCCCccccchhHHhhhcCCCC-----HH
Q 003806 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT-----GA 542 (794)
Q Consensus 477 ATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~t~GfS-----ga 542 (794)
+|+..+ ..|+++.+ ||. .|.++.|+.++..+|++..... .++.+.++ .+..++..+.+|. +.
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~de-al~~i~~ls~~yi~~r~lPd 388 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDK-ALEAAAKLSDQYIADRFLPD 388 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCccccCch
Confidence 998764 47899998 997 5789999999999998765432 23333333 3556666666553 44
Q ss_pred HHHHHHHHHHHHHHh
Q 003806 543 DLANLVNEAALLAGR 557 (794)
Q Consensus 543 DL~~Lv~eAal~A~r 557 (794)
..-.++++|+.....
T Consensus 389 kaidlld~a~a~~~~ 403 (821)
T CHL00095 389 KAIDLLDEAGSRVRL 403 (821)
T ss_pred HHHHHHHHHHHHHHh
Confidence 556777887765543
No 107
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.9e-13 Score=158.92 Aligned_cols=210 Identities=18% Similarity=0.258 Sum_probs=146.6
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------cEEEE
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC 396 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------pfi~i 396 (794)
+...+.+|+|++|++.+++.|...+. ..+.|.++||+||||||||++|+++|..+.+ |+-.|
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 33467789999999999998877653 1355678999999999999999999998753 11111
Q ss_pred e-cc--------hhHH--HhhccchHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHH
Q 003806 397 S-AS--------EFVE--LYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (794)
Q Consensus 397 s-~s--------e~~~--~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (794)
. |. ++.+ .....+...+|++.+.+... ...|++|||+|.+.. ...+.|+.
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLK 141 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLK 141 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHH
Confidence 0 00 0000 00112345677777666532 235999999998742 23477888
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCH
Q 003806 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (794)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (794)
.|+. +...+++|.+|+.++.|.+++++ |+. .+.+.+|+..+....++..+.+.+..++++ .+..++..+.| +.
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~e-al~~La~lS~G-dl 214 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDN-AIDKIADLADG-SL 214 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-cH
Confidence 8874 33567888888889999999987 644 789999999999999999888776656544 46778888776 78
Q ss_pred HHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 542 ADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
+++.++++.+...+. . .|+.+++.+
T Consensus 215 R~AlnlLekL~~y~~---~-~It~e~V~e 239 (605)
T PRK05896 215 RDGLSILDQLSTFKN---S-EIDIEDINK 239 (605)
T ss_pred HHHHHHHHHHHhhcC---C-CCCHHHHHH
Confidence 888888887554432 2 266665554
No 108
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=1.3e-13 Score=168.66 Aligned_cols=204 Identities=23% Similarity=0.342 Sum_probs=143.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEE
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~i 396 (794)
..-.++.++|.++..+.+.++ |.. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~---l~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQV---LSR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHH---Hhc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 345688999999854444443 322 233568999999999999999999875 6788998
Q ss_pred ecchhH--HHhhccchHHHHHHHHHHHh-cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 003806 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (794)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (794)
+.+.+. ..|.|..+.+++.+|+.+.. ..|+||||||||.|.+..... +.. ...|.|...+ .+..+.
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~----d~~~~Lk~~l----~~g~i~ 304 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAM----DAGNMLKPAL----ARGELH 304 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chh----HHHHHhchhh----hcCceE
Confidence 888776 36888888999999998865 458999999999997543211 111 1223333222 356799
Q ss_pred EEEEcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCc---cccchhHHhhhcCCC-----C
Q 003806 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA---KDIDLGDIASMTTGF-----T 540 (794)
Q Consensus 474 VIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~---~dvdl~~LA~~t~Gf-----S 540 (794)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..+...... .+..+...+..+.+| -
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~l 381 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFL 381 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCC
Confidence 999998764 47999999 997 5899999999999999887655322111 122344555555544 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003806 541 GADLANLVNEAALLAG 556 (794)
Q Consensus 541 gaDL~~Lv~eAal~A~ 556 (794)
|.-.-.++++|+..+.
T Consensus 382 PdkAidlld~a~a~~~ 397 (852)
T TIGR03346 382 PDKAIDLIDEAAARIR 397 (852)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4555677788776553
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.5e-13 Score=155.71 Aligned_cols=192 Identities=22% Similarity=0.291 Sum_probs=142.3
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------c-----
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------P----- 392 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------p----- 392 (794)
...+.+|+||+|++.+++.|...+.. .+.|..+|||||||+|||++|+++|+.+.+ |
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34568999999999999988887641 346677899999999999999999998732 1
Q ss_pred ------------EEEEecchhHHHhhccchHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHH
Q 003806 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (794)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (794)
++.++++. ..+...++++.+.+... ...|++|||+|.+.. ...
T Consensus 76 ~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~ 134 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAF 134 (535)
T ss_pred HHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHH
Confidence 22222111 11245677776654321 224999999998742 345
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhc
Q 003806 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (794)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (794)
|.||..|+.. ...+.+|.+|+.+..|.+++++ | ...+.+.+++.++..+.++..+...++.+.++ .+..+++.+
T Consensus 135 NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--R-c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~s 208 (535)
T PRK08451 135 NALLKTLEEP--PSYVKFILATTDPLKLPATILS--R-TQHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARSG 208 (535)
T ss_pred HHHHHHHhhc--CCceEEEEEECChhhCchHHHh--h-ceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7888888854 3456677777888999999988 6 45899999999999999999888877766543 577888888
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 003806 537 TGFTGADLANLVNEAALLA 555 (794)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A 555 (794)
.| +.+++.+++..+...+
T Consensus 209 ~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred CC-cHHHHHHHHHHHHHhc
Confidence 77 8899999988877655
No 110
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.6e-13 Score=165.78 Aligned_cols=208 Identities=21% Similarity=0.183 Sum_probs=146.0
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------EEEEe
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS 397 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------fi~is 397 (794)
...+.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+.+|+.+++. +-.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~-- 74 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE-- 74 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc--
Confidence 34567899999999999988887642 3456679999999999999999999998652 111
Q ss_pred cchhHHHh---------------hccchHHHHHHHHHHH----hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHH
Q 003806 398 ASEFVELY---------------VGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (794)
Q Consensus 398 ~se~~~~~---------------vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (794)
|..+.... ...+...+|++.+.+. .....|+||||+|.|.. ...|.
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~Na 139 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNA 139 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHH
Confidence 11111110 0113345666544433 23456999999999852 34678
Q ss_pred HHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCC
Q 003806 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (794)
Q Consensus 459 LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (794)
||+.|+... ..+++|.+|+.++.|.+.|++ | ..++.|..++.++..++|+..+.+.++.+.++ .+..+++.+.|
T Consensus 140 LLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--R-c~~v~F~~l~~~~l~~~L~~il~~EGv~id~e-al~lLa~~sgG 213 (824)
T PRK07764 140 LLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--R-THHYPFRLVPPEVMRGYLERICAQEGVPVEPG-VLPLVIRAGGG 213 (824)
T ss_pred HHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--h-eeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 888888433 567777788888889889887 5 35889999999999999999998877655433 46677777766
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 539 fSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
+.+++.++++..+..+ +...|+.+++..
T Consensus 214 -dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 214 -SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred -CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 7888888888765332 234466665543
No 111
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.4e-13 Score=154.23 Aligned_cols=211 Identities=21% Similarity=0.282 Sum_probs=147.2
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------cEEEE-
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC- 396 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------pfi~i- 396 (794)
..++.+|+|++|++.+++.|...+.. .+.+..+|||||||+|||++|+.+|..+++ |+-.|
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 34567899999999999988777642 245667899999999999999999998764 22111
Q ss_pred ecchhH-----HHh-----hccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 397 SASEFV-----ELY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 397 s~se~~-----~~~-----vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
+|..+. +.+ ...+...++.+.+.+.. ..+.|++|||+|.+.. ...|.|+..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~ 142 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKT 142 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHH
Confidence 111110 000 11234456666655543 3356999999998742 234778888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHH
Q 003806 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (794)
++.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+|+..+...+++.++...++.++++ .+..++..+.| +.+
T Consensus 143 LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~-al~~La~~s~G-~lr 215 (486)
T PRK14953 143 LEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEK-ALDLLAQASEG-GMR 215 (486)
T ss_pred HhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 7743 3456666667778888888887 543 789999999999999999998877655443 46778887776 778
Q ss_pred HHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
++.++++.+...+ ...|+.+++.+++
T Consensus 216 ~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 216 DAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 8888888776442 3457887777755
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.7e-13 Score=157.12 Aligned_cols=213 Identities=18% Similarity=0.202 Sum_probs=153.6
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE-------
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC------- 396 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i------- 396 (794)
....+.+|+||+|++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+++.....
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 445677999999999999998886642 35677899999999999999999999886532111
Q ss_pred ------ecchhHH--------H--hhccchHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHH
Q 003806 397 ------SASEFVE--------L--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (794)
Q Consensus 397 ------s~se~~~--------~--~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (794)
+|..+.+ . -...+...+|++.+.+... ...|++|||+|.+.. ...
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~ 149 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAF 149 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHH
Confidence 1111111 0 0112356788888777532 346999999998842 346
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhc
Q 003806 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (794)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (794)
|.||..|+.. ...+++|.+|+.++.+.+.+++ |. ..+.+..|+.++....++..+.+.+..+.++ .++.|++.+
T Consensus 150 naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~a 223 (598)
T PRK09111 150 NALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARAA 223 (598)
T ss_pred HHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7888888743 3456777777778888888887 54 4789999999999999999998877666543 467778888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 003806 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (794)
.| +.+++.++++.+.... ...|+.+++...+.
T Consensus 224 ~G-dlr~al~~Ldkli~~g----~g~It~e~V~~llg 255 (598)
T PRK09111 224 EG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLG 255 (598)
T ss_pred CC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhC
Confidence 76 7888988888765442 34588888776653
No 113
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.51 E-value=4.5e-13 Score=158.13 Aligned_cols=218 Identities=17% Similarity=0.156 Sum_probs=139.4
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------C---CcEEEEecchh
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------E---VPFISCSASEF 401 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-------g---vpfi~is~se~ 401 (794)
+.|.|.++..++|..++...-. +..++..++|+|+||||||++++.+..++ + +.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 5677777766666555543111 22233335699999999999999998765 2 55789999553
Q ss_pred HHH----------hh------c-cchHHHHHHHHHHH--hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 402 VEL----------YV------G-MGASRVRDLFARAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 402 ~~~----------~v------G-~~~~~vr~lF~~Ar--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
... .. | .....+..+|.... ....+||+|||||.|.... ..+|..|+..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR~ 895 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFDW 895 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHHH
Confidence 321 10 1 11234556666542 2345799999999996431 2445555554
Q ss_pred hcCCCCCCcEEEEEEcCC---CCCCCccccCCCccce-EEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCC
Q 003806 463 MDGFDSNSAVIVLGATNR---SDVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~---pd~LDpALlRpGRFdr-~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (794)
.. .....++|||++|. ++.|+|.+.+ ||.. .+.|++++.+++.+||+..+......+.++ .++.+|+....
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDd-AIELIArkVAq 970 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHT-AIQLCARKVAN 970 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHhhhh
Confidence 33 23467999999986 5677888877 5542 478899999999999999987532223333 35666664443
Q ss_pred C--CHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 003806 539 F--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 539 f--SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (794)
. ..+..-.+|+.|+.. ++...|+.+|+.+|+++..
T Consensus 971 ~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 2 334445556666654 3445899999999997654
No 114
>PRK08727 hypothetical protein; Validated
Probab=99.51 E-value=3.8e-13 Score=140.88 Aligned_cols=209 Identities=20% Similarity=0.225 Sum_probs=135.4
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
+..+|++.++.+.- .+..+..... + .....++|+||+|||||+|+++++.++ +...++++..++..
T Consensus 14 ~~~~f~~f~~~~~n--~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~ 82 (233)
T PRK08727 14 SDQRFDSYIAAPDG--LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG 82 (233)
T ss_pred CcCChhhccCCcHH--HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence 45789988866542 1211111111 1 223459999999999999999997654 66777777665443
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
. +.+.++... ...+|+|||+|.+.... .....+..+++.+. .+..-+|+++.+.|..
T Consensus 83 ~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~----------~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 83 R--------LRDALEALE--GRSLVALDGLESIAGQR----------EDEVALFDFHNRAR---AAGITLLYTARQMPDG 139 (233)
T ss_pred h--------HHHHHHHHh--cCCEEEEeCcccccCCh----------HHHHHHHHHHHHHH---HcCCeEEEECCCChhh
Confidence 2 223344332 34599999999875322 12233444555442 1222244444455655
Q ss_pred C---CccccCCCcc--ceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 484 L---DPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 484 L---DpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
+ +++|.+ || ...+.++.|+.+++.+|++.++..+++.++++ .++.|++.+.| +.+.+.++++.....+...
T Consensus 140 l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e-~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~ 215 (233)
T PRK08727 140 LALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEA-AIDWLLTHGER-ELAGLVALLDRLDRESLAA 215 (233)
T ss_pred hhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 5 688987 76 56889999999999999999887777766655 47788888876 6777777787665445444
Q ss_pred CCccccHHHHHHHHHH
Q 003806 559 NKVVVEKIDFIHAVER 574 (794)
Q Consensus 559 ~~~~It~~d~~~Al~r 574 (794)
+ ..||...+.+.+.+
T Consensus 216 ~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 216 K-RRVTVPFLRRVLEE 230 (233)
T ss_pred C-CCCCHHHHHHHHhh
Confidence 3 46888888877753
No 115
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=4.7e-13 Score=156.32 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=149.9
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------cEEEE-
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC- 396 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------pfi~i- 396 (794)
...+.+|+||+|++.+++.|+..+.. .+.|..+|||||||+|||++|+++|+.+++ |+-.|
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 34567899999999999988887642 245677999999999999999999998864 22211
Q ss_pred ecchhHHH-------hhc---cchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 397 SASEFVEL-------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 397 s~se~~~~-------~vG---~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
+|..+.+. +.| .+...++++.+.+.. ....|++|||+|.+.. ...|.||..
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~ 142 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKT 142 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHh
Confidence 11111000 011 223456666554432 3456999999998742 346788888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHH
Q 003806 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (794)
++. +...+++|.+|+.+..|.+++++ |+. .+.+.+++.++..++++..+...++++.++ .+..+++.+.| +.+
T Consensus 143 LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e-Al~lLa~~s~G-dlR 215 (563)
T PRK06647 143 IEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE-ALKWIAYKSTG-SVR 215 (563)
T ss_pred hcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 884 44567888888888899999987 654 788999999999999999888777766544 57778888776 788
Q ss_pred HHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
++.++++.+...+ ...|+.+++..++
T Consensus 216 ~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 216 DAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8888888776543 2347777666654
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=3.7e-13 Score=153.65 Aligned_cols=192 Identities=13% Similarity=0.210 Sum_probs=131.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecchhHHHhhccchH---HHHHHHHHHHhcCCEEEEEcccchh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAV 436 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se~~~~~vG~~~~---~vr~lF~~Ar~~aP~ILfIDEIDaL 436 (794)
..+++||||+|||||+|++++++++ +..++++++.+|...+...-.. .+.++.+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999854 5788999999988766543221 222221222 24569999999987
Q ss_pred hhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC---CCCccccCCCccc--eEEEeecCCHHhHHHH
Q 003806 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRFD--RVVMVETPDKIGREAI 511 (794)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eI 511 (794)
..+. .....+-.+++.+. ...+.+|+++...|+ .+++.|.+ ||. ..+.+.+|+.++|.+|
T Consensus 219 ~~k~----------~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SYKE----------KTNEIFFTIFNNFI---ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cCCH----------HHHHHHHHHHHHHH---HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 5321 11223333333332 123334544444443 45788887 774 6788899999999999
Q ss_pred HHHHHhcCCC--CCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC-CccccHHHHHHHHHHH
Q 003806 512 LKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-KVVVEKIDFIHAVERS 575 (794)
Q Consensus 512 Lk~~l~~~~l--~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~-~~~It~~d~~~Al~rv 575 (794)
++..+...++ .++++ .++.|+....| +.+.|.++++.+...+.... ...|+.+.+.+++...
T Consensus 284 L~~~~~~~gl~~~l~~e-vl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEE-AINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHhcCCCCCCCHH-HHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9999987654 34443 46778888887 89999999999886665542 3679999999888654
No 117
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3e-13 Score=152.22 Aligned_cols=216 Identities=15% Similarity=0.175 Sum_probs=147.7
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcE-E--------
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-I-------- 394 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpf-i-------- 394 (794)
+...+.+|+||+|++.+++.|+..+. ..+.|..+||+||||+|||++|+++|+++.+.- .
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 44567889999999999998877664 235677899999999999999999999886521 0
Q ss_pred -EEecchh------HH-------Hhhc---cchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHH
Q 003806 395 -SCSASEF------VE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (794)
Q Consensus 395 -~is~se~------~~-------~~vG---~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (794)
.-.|... .. .+.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------
Confidence 0111111 00 0111 124566666655532 2235999999998842
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHh
Q 003806 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (794)
Q Consensus 454 ~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA 533 (794)
...+.|+..++.. ....++|.+|+.+..+.+++.+ |.. .+.+.+++.++..+.++..+...+..+.++ .++.++
T Consensus 142 ~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~-al~~l~ 215 (397)
T PRK14955 142 AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD-ALQLIG 215 (397)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 2346677777633 2355666666777888888876 543 788999999998888888887766555544 467778
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHh-hCCccccHHHHHHHH
Q 003806 534 SMTTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (794)
Q Consensus 534 ~~t~GfSgaDL~~Lv~eAal~A~r-~~~~~It~~d~~~Al 572 (794)
..+.| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 87766 778888888877666532 234578888887765
No 118
>PRK05642 DNA replication initiation factor; Validated
Probab=99.50 E-value=6.7e-13 Score=139.20 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=125.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccC
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~ 441 (794)
...++|+||+|||||+|++++++++ +..+++++..++.... ..+.+..+. ..+|+|||++.+....
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 4679999999999999999998754 6788889988876531 122222222 2489999999874321
Q ss_pred CCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC---CCccccCCCcc--ceEEEeecCCHHhHHHHHHHHH
Q 003806 442 GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHV 516 (794)
Q Consensus 442 ~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~---LDpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l 516 (794)
...+.+-.+++.+ ..+...++++++..|.. ..|.|.+ || ...+.+..|+.+++.++++..+
T Consensus 114 ---------~~~~~Lf~l~n~~---~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 114 ---------DWEEALFHLFNRL---RDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred ---------HHHHHHHHHHHHH---HhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 1123344444433 23345677777766643 3688887 77 4678889999999999999777
Q ss_pred hcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 517 SKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 517 ~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
...++.++++ .++.++++..+ +.+.+.++++.-...+ ...+..||..-+.+++
T Consensus 180 ~~~~~~l~~e-v~~~L~~~~~~-d~r~l~~~l~~l~~~~-l~~~~~it~~~~~~~L 232 (234)
T PRK05642 180 SRRGLHLTDE-VGHFILTRGTR-SMSALFDLLERLDQAS-LQAQRKLTIPFLKETL 232 (234)
T ss_pred HHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHH-HHcCCcCCHHHHHHHh
Confidence 7666766655 37778888877 8999999998876544 3344668887777765
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=8.1e-13 Score=150.96 Aligned_cols=206 Identities=20% Similarity=0.254 Sum_probs=143.9
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-----------
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp----------- 392 (794)
+...+.+|+||+|++.+++.|...+.. .+.|..+|||||||+|||++|+++|+.+.++
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 334568999999999999988876642 2456779999999999999999999987542
Q ss_pred --------------EEEEecchhHHHhhccchHHHHHHHHHHH----hcCCEEEEEcccchhhhccCCCccccchHHHHH
Q 003806 393 --------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (794)
Q Consensus 393 --------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (794)
++.+++.. ..+...++++-+... .....||+|||+|.+.. .
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~ 136 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------E 136 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------H
Confidence 22222110 112344554443332 23467999999998842 2
Q ss_pred HHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhh
Q 003806 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (794)
Q Consensus 455 ~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~ 534 (794)
..|.|+..|+.. ...+++|.+||.+..|.+++.+ |+ ..+.+..++.++..+.++..+.+.++.++++ .++.++.
T Consensus 137 ~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~~ 210 (451)
T PRK06305 137 AFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIAR 210 (451)
T ss_pred HHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 357788888853 3466777788888899999987 54 3789999999999999998887766655443 5677888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 535 ~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
.+.| +.+++.+.++...... + ..|+.+++.+++
T Consensus 211 ~s~g-dlr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 211 AAQG-SLRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 7765 6666666666554332 2 338887776655
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.49 E-value=1.1e-13 Score=147.20 Aligned_cols=194 Identities=22% Similarity=0.237 Sum_probs=136.3
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc------EEEE
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FISC 396 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp------fi~i 396 (794)
.+...+.+|+|++|++.+.+.|...+.. +.-.++|||||||||||+.|+++|.++..| +...
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 4566788999999999999998886643 223469999999999999999999998652 2223
Q ss_pred ecchhHHHhhccchHHHHHHHHHHHhc------CC----EEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC
Q 003806 397 SASEFVELYVGMGASRVRDLFARAKKE------AP----SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (794)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~Ar~~------aP----~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 466 (794)
+.++....- ....++. -|++.... .| .|++|||.|.+... .-+.|..-|+.+
T Consensus 95 naSderGis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd---------------aq~aLrr~mE~~ 156 (346)
T KOG0989|consen 95 NASDERGIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD---------------AQAALRRTMEDF 156 (346)
T ss_pred ccccccccc--chhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH---------------HHHHHHHHHhcc
Confidence 444332211 1111221 23333221 12 59999999998643 336777888865
Q ss_pred CCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHH
Q 003806 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 546 (794)
Q Consensus 467 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~ 546 (794)
. ..+++|..||.++.|.+.+.+ |. ..+.|+....+.....|+..+.+.+++++++ .++.|+..+.| +-++...
T Consensus 157 s--~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~-al~~I~~~S~G-dLR~Ait 229 (346)
T KOG0989|consen 157 S--RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDD-ALKLIAKISDG-DLRRAIT 229 (346)
T ss_pred c--cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-cHHHHHH
Confidence 4 457888899999999999987 53 3677888888888899999999988887665 47888887776 4555555
Q ss_pred HHHHHHH
Q 003806 547 LVNEAAL 553 (794)
Q Consensus 547 Lv~eAal 553 (794)
.++.++.
T Consensus 230 ~Lqsls~ 236 (346)
T KOG0989|consen 230 TLQSLSL 236 (346)
T ss_pred HHHHhhc
Confidence 5555543
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.49 E-value=4.4e-13 Score=139.32 Aligned_cols=201 Identities=23% Similarity=0.346 Sum_probs=124.8
Q ss_pred CCccccccc-CC--hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEec
Q 003806 327 DTITFADVA-GV--DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (794)
Q Consensus 327 ~~vtf~DV~-G~--devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~ 398 (794)
|..||++.+ |. ..+...++.+.+ ++. .....++||||+|+|||+|.+|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAE---NPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHH---STT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHh---cCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567899986 42 223333333322 221 123359999999999999999998874 678999999
Q ss_pred chhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 399 SEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
.+|...+.......-..-|..... ...+|+||++|.+..+ ......+-.+++.+. .+.+.+|+++.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~----------~~~q~~lf~l~n~~~---~~~k~li~ts~ 138 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK----------QRTQEELFHLFNRLI---ESGKQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH----------HHHHHHHHHHHHHHH---HTTSEEEEEES
T ss_pred HHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc----------hHHHHHHHHHHHHHH---hhCCeEEEEeC
Confidence 999876543322111122322222 3459999999998532 222334444444432 23455677676
Q ss_pred CCCCCC---CccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHH
Q 003806 479 NRSDVL---DPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (794)
Q Consensus 479 N~pd~L---DpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal 553 (794)
..|..+ ++.|.+ ||. ..+.+..|+.+.|.+|++..+..+++.+++++ .+.+++...+ +.++|..+++.-..
T Consensus 139 ~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 139 RPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp S-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 666554 577766 764 58899999999999999999999988877764 6677887765 88999999887665
Q ss_pred HH
Q 003806 554 LA 555 (794)
Q Consensus 554 ~A 555 (794)
.+
T Consensus 215 ~~ 216 (219)
T PF00308_consen 215 YA 216 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 122
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.49 E-value=1.8e-12 Score=140.04 Aligned_cols=204 Identities=22% Similarity=0.249 Sum_probs=136.4
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CcEEEEecc
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS 399 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg-----vpfi~is~s 399 (794)
...+.+|+|++|.+++++.|...+.. .. ..++||+||||||||++++++++++. .+++.++++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE-----------KN-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC-----------CC-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 34567899999999999988876631 11 22589999999999999999999863 345555544
Q ss_pred hhHHHhhccchHHHHHHHHHHHh------cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 003806 400 EFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (794)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~Ar~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (794)
+-. +...+++.+..... ..+.+|+|||+|.+... ..+.|+..++.... ...
T Consensus 78 ~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---------------~~~~L~~~le~~~~--~~~ 134 (319)
T PRK00440 78 DER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---------------AQQALRRTMEMYSQ--NTR 134 (319)
T ss_pred ccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---------------HHHHHHHHHhcCCC--CCe
Confidence 321 11122222222211 23569999999987421 12345555554333 345
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHH
Q 003806 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (794)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal 553 (794)
+|.++|.+..+.+++.+ |+. .+.+++|+.++...+++.++.+.++.+.++ .++.++..+.| +.+.+.+.++.++.
T Consensus 135 lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~-al~~l~~~~~g-d~r~~~~~l~~~~~ 209 (319)
T PRK00440 135 FILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDD-ALEAIYYVSEG-DMRKAINALQAAAA 209 (319)
T ss_pred EEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 55567777777777876 654 689999999999999999998877766554 57788887765 55666666654443
Q ss_pred HHHhhCCccccHHHHHHHHH
Q 003806 554 LAGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~ 573 (794)
. ...||.+++..++.
T Consensus 210 ~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 210 T-----GKEVTEEAVYKITG 224 (319)
T ss_pred c-----CCCCCHHHHHHHhC
Confidence 2 35789988887763
No 123
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.47 E-value=4.8e-13 Score=153.17 Aligned_cols=197 Identities=22% Similarity=0.298 Sum_probs=154.3
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------EEEEe-
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS- 397 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------fi~is- 397 (794)
.++.+|+|++|++.+.+.|...+..-+ .+.+.||.||.|||||++||.+|+.+++. +-.|.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~r-----------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGR-----------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCc-----------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 356789999999999999999886543 44569999999999999999999987653 32221
Q ss_pred c--------chhHH--HhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhh
Q 003806 398 A--------SEFVE--LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (794)
Q Consensus 398 ~--------se~~~--~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (794)
| .++++ .-...+-+.+|++.+.+.. ..+.|++|||+|.|. .+.+|.||..+
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTL 143 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTL 143 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhccc
Confidence 1 11111 1223466788888888753 345699999999885 35679999999
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHH
Q 003806 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (794)
Q Consensus 464 dg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaD 543 (794)
+ ++...|++|.||..+..+++.+++ | ..++.+..-+.++....|...+.++++...++ .+..+|+...| |.+|
T Consensus 144 E--EPP~hV~FIlATTe~~Kip~TIlS--R-cq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~-aL~~ia~~a~G-s~RD 216 (515)
T COG2812 144 E--EPPSHVKFILATTEPQKIPNTILS--R-CQRFDFKRLDLEEIAKHLAAILDKEGINIEED-ALSLIARAAEG-SLRD 216 (515)
T ss_pred c--cCccCeEEEEecCCcCcCchhhhh--c-cccccccCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHcCC-Chhh
Confidence 8 566789999999999999999988 4 33677889999999999999999888866544 57888999988 8999
Q ss_pred HHHHHHHHHHHH
Q 003806 544 LANLVNEAALLA 555 (794)
Q Consensus 544 L~~Lv~eAal~A 555 (794)
..++++.|....
T Consensus 217 alslLDq~i~~~ 228 (515)
T COG2812 217 ALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHcc
Confidence 999999987664
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.3e-12 Score=154.16 Aligned_cols=209 Identities=18% Similarity=0.210 Sum_probs=145.4
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE----Ee--
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS----CS-- 397 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~----is-- 397 (794)
...++.+|++++|++++++.|...+.. .+.+.++||+||||||||++|+++|+.+++.... -.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 344668899999999999998887753 2345679999999999999999999998652110 01
Q ss_pred -cch-----------hH--HHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHH
Q 003806 398 -ASE-----------FV--ELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (794)
Q Consensus 398 -~se-----------~~--~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 459 (794)
|.. +. +.....+...+|++++.+.. ....|++|||+|.|.. ...|.|
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naL 141 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNAL 141 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHH
Confidence 110 00 01122445678888877753 2235999999998842 345788
Q ss_pred HHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCC
Q 003806 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (794)
Q Consensus 460 L~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~Gf 539 (794)
|..|+. ....+++|.+|+.++.+.+.+++ |. ..+.|..++.++....+...+.+.+..+.++ .+..+++.+.|
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~-al~~La~~s~G- 214 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPE-ALTLVAQRSQG- 214 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-
Confidence 888884 34567788888888888889887 54 4788889988888888888877766655444 37778888776
Q ss_pred CHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
+.+++.++++...+.. ..|+.+++.+
T Consensus 215 ~lr~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 215 GLRDAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred CHHHHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 5677777777644331 2355555443
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.1e-12 Score=151.95 Aligned_cols=215 Identities=15% Similarity=0.201 Sum_probs=147.2
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE---------
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS--------- 395 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~--------- 395 (794)
...+.+|+||+|++.+++.|+..+. ..+.+.++||+||||||||++|+.+|+.+.+.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 3467789999999999998877653 23567789999999999999999999998762100
Q ss_pred -Eecch---hHH----------Hhhc---cchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHH
Q 003806 396 -CSASE---FVE----------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (794)
Q Consensus 396 -is~se---~~~----------~~vG---~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (794)
-.|.. ... .+.+ .+...++++.+.+.. ....|++|||+|.+.. .
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~ 142 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------A 142 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------H
Confidence 01111 110 0111 124567776665532 2345999999998742 2
Q ss_pred HHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhh
Q 003806 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (794)
Q Consensus 455 ~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~ 534 (794)
..|.|+..|+... ..+++|.+|+.+..|.+.+.+ | ...+.+..++.++....+...+...+..+.++ .++.++.
T Consensus 143 a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--R-c~~vef~~l~~~ei~~~L~~i~~~egi~I~~e-al~~La~ 216 (620)
T PRK14954 143 AFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--R-CQRFNFKRIPLDEIQSQLQMICRAEGIQIDAD-ALQLIAR 216 (620)
T ss_pred HHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--h-ceEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 3578888887433 345666666777888888887 4 35899999999998888888887766655444 5777888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHH-hhCCccccHHHHHHHH
Q 003806 535 MTTGFTGADLANLVNEAALLAG-RLNKVVVEKIDFIHAV 572 (794)
Q Consensus 535 ~t~GfSgaDL~~Lv~eAal~A~-r~~~~~It~~d~~~Al 572 (794)
.+.| +.+++.+.++....++. ......|+.+++.+.+
T Consensus 217 ~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 8766 67777777776665552 1224567777776655
No 126
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.46 E-value=1.7e-12 Score=135.71 Aligned_cols=195 Identities=23% Similarity=0.357 Sum_probs=135.2
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~ 401 (794)
....+.+++++|+++.|+.|.+-...+.. ..+..++||+|++|||||+++|++..+. |..++.+...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34679999999999999998876644322 4577899999999999999999998865 788899887766
Q ss_pred HHHhhccchHHHHHHHHHHH-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC--CCCCcEEEEEEc
Q 003806 402 VELYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGAT 478 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~~~~VIVIaAT 478 (794)
.. +.++++..+ ...+-|||+|++- +. ..+. ....|-..|||- ....+|++.||+
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe----------~~d~---~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-FE----------EGDT---EYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-CC----------CCcH---HHHHHHHHhcCccccCCCcEEEEEec
Confidence 43 445555554 2345699999863 11 1122 224555555553 335789999999
Q ss_pred CCCCCCCccc---------------------cCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccc-cch--hHHhh
Q 003806 479 NRSDVLDPAL---------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDL--GDIAS 534 (794)
Q Consensus 479 N~pd~LDpAL---------------------lRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vdl--~~LA~ 534 (794)
|+-..++... --..||...+.|..|+.++..+|++.++.+.+++++.+ ... ...|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9854443221 11238999999999999999999999998877766531 111 12244
Q ss_pred hcCCCCHHHHHHHHHH
Q 003806 535 MTTGFTGADLANLVNE 550 (794)
Q Consensus 535 ~t~GfSgaDL~~Lv~e 550 (794)
...|.||+-..+.++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 5556677766665543
No 127
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.46 E-value=9.1e-13 Score=147.20 Aligned_cols=171 Identities=30% Similarity=0.459 Sum_probs=126.2
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhC----C---CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-H
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLG----A---RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-L 404 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg----~---~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-~ 404 (794)
.|+|++++|+.+...+.. .|.+.+ . ..|.++||+||||||||++|+++|..++.||+.++++.|.+ .
T Consensus 16 ~IiGQe~AkkalavAl~~-----~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~G 90 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRN-----RWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 90 (443)
T ss_pred ccCCHHHHHHHHHHHHHH-----HHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCC
Confidence 399999999999776632 111221 1 13689999999999999999999999999999999998886 5
Q ss_pred hhc-cchHHHHHHHHHHH--------------------------------------------------------------
Q 003806 405 YVG-MGASRVRDLFARAK-------------------------------------------------------------- 421 (794)
Q Consensus 405 ~vG-~~~~~vr~lF~~Ar-------------------------------------------------------------- 421 (794)
|+| ..+..++++|+.|.
T Consensus 91 yvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd 170 (443)
T PRK05201 91 YVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDD 170 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCC
Confidence 888 34566777776661
Q ss_pred ----------------------------------------------------------------------------hcCC
Q 003806 422 ----------------------------------------------------------------------------KEAP 425 (794)
Q Consensus 422 ----------------------------------------------------------------------------~~aP 425 (794)
...-
T Consensus 171 ~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~ 250 (443)
T PRK05201 171 KEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQN 250 (443)
T ss_pred cEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Confidence 0123
Q ss_pred EEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--------CCCcEEEEEEc----CCCCCCCccccCCCc
Q 003806 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPGR 493 (794)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaAT----N~pd~LDpALlRpGR 493 (794)
.||||||||.++.+.+.. +.+-..+.+-..||..++|-. ...+|++||+. ..|+.|-|.|. ||
T Consensus 251 GIVfiDEiDKIa~~~~~~---~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR 325 (443)
T PRK05201 251 GIVFIDEIDKIAARGGSS---GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GR 325 (443)
T ss_pred CEEEEEcchhhcccCCCC---CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--Cc
Confidence 599999999998764321 222223445567888887732 23678888876 34666778887 59
Q ss_pred cceEEEeecCCHHhHHHHHH
Q 003806 494 FDRVVMVETPDKIGREAILK 513 (794)
Q Consensus 494 Fdr~I~v~~Pd~~eR~eILk 513 (794)
|..++.+..++.++...||.
T Consensus 326 ~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 326 FPIRVELDALTEEDFVRILT 345 (443)
T ss_pred cceEEECCCCCHHHHHHHhc
Confidence 99999999999999988873
No 128
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=9.5e-13 Score=147.00 Aligned_cols=175 Identities=33% Similarity=0.459 Sum_probs=123.9
Q ss_pred cccCChHhHHHHHHHHHH-hcChhHHhhh-CCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-Hhhc-c
Q 003806 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~-Lk~p~~~~~l-g~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-~~vG-~ 408 (794)
-|+|++++|+.+...+.. ++.......+ .--+|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999998765542 1111000001 1235789999999999999999999999999999999988865 5766 3
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 003806 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (794)
Q Consensus 409 ~~~~vr~lF~~Ar------------------------------------------------------------------- 421 (794)
.+..++++|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 4566666665550
Q ss_pred ------------------------------------------------------------------------hcCCEEEE
Q 003806 422 ------------------------------------------------------------------------KEAPSIIF 429 (794)
Q Consensus 422 ------------------------------------------------------------------------~~aP~ILf 429 (794)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01345999
Q ss_pred EcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--------CCCcEEEEEEcC----CCCCCCccccCCCccceE
Q 003806 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRV 497 (794)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaATN----~pd~LDpALlRpGRFdr~ 497 (794)
|||||+++.+.... +.+-..+.+-+.||..++|-. ...+|++||+.- .|+.|=|.|. |||..+
T Consensus 253 iDEiDKIa~~~~~~---~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGESS---GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIR 327 (441)
T ss_pred EEchhhhcccCCCC---CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceE
Confidence 99999998764221 122223345567888887632 236788888873 4666767776 699999
Q ss_pred EEeecCCHHhHHHHH
Q 003806 498 VMVETPDKIGREAIL 512 (794)
Q Consensus 498 I~v~~Pd~~eR~eIL 512 (794)
+.+..++.++...||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999998887
No 129
>PRK06620 hypothetical protein; Validated
Probab=99.46 E-value=1e-12 Score=136.17 Aligned_cols=196 Identities=15% Similarity=0.210 Sum_probs=129.0
Q ss_pred CCCcccccccCChH---hHHHHHHHHHHhcChhHHhhhCCCC-CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 326 GDTITFADVAGVDE---AKEELEEIVEFLRSPDKYIRLGARP-PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 326 ~~~vtf~DV~G~de---vK~~L~eiV~~Lk~p~~~~~lg~~~-pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
.+..+|++++--+. +...++++.+ .+ +..+ -+.++||||||||||+|++++++..+..++. ...+
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 35668888776553 3333333221 11 2222 1679999999999999999999988764432 1111
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
. .+.+ ....+|+|||||.+. . ..+-.+++.+. .+.+.++|+++..|
T Consensus 79 ~-----------~~~~-----~~~d~lliDdi~~~~-----------~----~~lf~l~N~~~---e~g~~ilits~~~p 124 (214)
T PRK06620 79 N-----------EEIL-----EKYNAFIIEDIENWQ-----------E----PALLHIFNIIN---EKQKYLLLTSSDKS 124 (214)
T ss_pred c-----------hhHH-----hcCCEEEEeccccch-----------H----HHHHHHHHHHH---hcCCEEEEEcCCCc
Confidence 0 0111 123589999999431 1 12334444332 23456788887666
Q ss_pred CC--CCccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 003806 482 DV--LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (794)
Q Consensus 482 d~--LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r 557 (794)
.. + |+|++ |+. ..+.+..|+.+.+.++++.++...++.+++++ ++.|+.+..+ +.+.+.++++.....+..
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 199 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFALI 199 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 54 5 77877 764 47899999999999999999887777776664 7788888877 889999999986544433
Q ss_pred hCCccccHHHHHHHH
Q 003806 558 LNKVVVEKIDFIHAV 572 (794)
Q Consensus 558 ~~~~~It~~d~~~Al 572 (794)
.+..||...+.+++
T Consensus 200 -~~~~it~~~~~~~l 213 (214)
T PRK06620 200 -SKRKITISLVKEVL 213 (214)
T ss_pred -cCCCCCHHHHHHHh
Confidence 34568888777765
No 130
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.45 E-value=1.1e-12 Score=147.64 Aligned_cols=180 Identities=29% Similarity=0.385 Sum_probs=114.9
Q ss_pred cccCChHhHHHHHHHHHH-hcChh----HHhhhCC-CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-Hh
Q 003806 333 DVAGVDEAKEELEEIVEF-LRSPD----KYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LY 405 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~-Lk~p~----~~~~lg~-~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-~~ 405 (794)
-|+|++++|+.+...+.. ++.-. .-..-+. ..+.++||+||||||||++|+++|..+++||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 379999999998776622 11100 0000001 12357999999999999999999999999999999887653 47
Q ss_pred hccch-HHHHHHHHHH----HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-----------CC
Q 003806 406 VGMGA-SRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SN 469 (794)
Q Consensus 406 vG~~~-~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~ 469 (794)
+|... ..+..++..+ ....++||||||||.+.+++.+.. ...+...+.+.+.||+.|+|.. +.
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s-~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS-ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc-ccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 77643 3344444322 234678999999999987543210 0111111235566666665532 12
Q ss_pred CcEEEEEEcCCC---------------------------C-----------------------CCCccccCCCccceEEE
Q 003806 470 SAVIVLGATNRS---------------------------D-----------------------VLDPALRRPGRFDRVVM 499 (794)
Q Consensus 470 ~~VIVIaATN~p---------------------------d-----------------------~LDpALlRpGRFdr~I~ 499 (794)
.+.++|.|+|-. + -+.|+|+ ||+|.++.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 346777777751 0 0224444 59999999
Q ss_pred eecCCHHhHHHHHHHH
Q 003806 500 VETPDKIGREAILKVH 515 (794)
Q Consensus 500 v~~Pd~~eR~eILk~~ 515 (794)
+.+.+.++..+|+...
T Consensus 315 f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 315 LEKLDEEALIAILTKP 330 (413)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 9999999999998763
No 131
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.45 E-value=2.2e-12 Score=139.30 Aligned_cols=128 Identities=23% Similarity=0.294 Sum_probs=93.4
Q ss_pred CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC------------CCCCCccccCCC
Q 003806 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR------------SDVLDPALRRPG 492 (794)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~------------pd~LDpALlRpG 492 (794)
|.||||||+|.|- -|.-..+|.-+.. .-.-++|.|||+ |.-++..|+.
T Consensus 292 pGVLFIDEvHmLD------------IE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD-- 351 (450)
T COG1224 292 PGVLFIDEVHMLD------------IECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD-- 351 (450)
T ss_pred cceEEEechhhhh------------HHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--
Confidence 7788888877652 2222333333321 122367778886 5667777765
Q ss_pred ccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 493 RFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 493 RFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
|+ ..|...+++.++.++|++..+...++.+.++ .++.|+.....-|-+-.-+|+.-|...|.++++..|..+|+++|.
T Consensus 352 Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~-Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 352 RL-LIISTRPYSREEIREIIRIRAKEEDIELSDD-ALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred he-eEEecCCCCHHHHHHHHHHhhhhhccccCHH-HHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 43 2566678899999999999998888777655 578888877777888888999999999999999999999999987
Q ss_pred HH
Q 003806 573 ER 574 (794)
Q Consensus 573 ~r 574 (794)
+-
T Consensus 430 ~l 431 (450)
T COG1224 430 EL 431 (450)
T ss_pred HH
Confidence 53
No 132
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.45 E-value=2.1e-12 Score=137.64 Aligned_cols=187 Identities=24% Similarity=0.247 Sum_probs=114.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch------hHHHhhccchHHHHHH--------------------HHH
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE------FVELYVGMGASRVRDL--------------------FAR 419 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se------~~~~~vG~~~~~vr~l--------------------F~~ 419 (794)
..+||+||||||||++|+++|..+|.||+.++|.. +...+.+.....+.+- +..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998753 2222222111111111 112
Q ss_pred HHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhh----cCCC-------CCCcEEEEEEcCCC-----CC
Q 003806 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM----DGFD-------SNSAVIVLGATNRS-----DV 483 (794)
Q Consensus 420 Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em----dg~~-------~~~~VIVIaATN~p-----d~ 483 (794)
|.. ...+|+|||||.+... ....|..++.+- .+.. .+.++.||+|+|.. ..
T Consensus 102 A~~-~g~~lllDEi~r~~~~------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSKPE------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHH-cCCEEEEcchhhCCHH------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 222 2359999999986422 222333333321 0000 12367899999976 35
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHH---h---h---hcCCCCHHHHHHHHHHHHHH
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI---A---S---MTTGFTGADLANLVNEAALL 554 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~L---A---~---~t~GfSgaDL~~Lv~eAal~ 554 (794)
++++|++ || ..+.++.|+.++-.+|++.+.. ++++. .+.+ + + .....+ .+.++.-|...
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-----~~~~~-~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~ 236 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-----VAEDS-AATIVRLVREFRASGDEITSG---LRASLMIAEVA 236 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-----CCHHH-HHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHH
Confidence 6889998 87 5789999999999999998752 12211 1111 1 1 111223 44444444444
Q ss_pred HHhhCCccccHHHHHHHHHHHhc
Q 003806 555 AGRLNKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi~ 577 (794)
+....+..++.+||.+....++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 237 TQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHcCCCCCCCcHHHHHHHHHHhc
Confidence 44455777888888888776654
No 133
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.7e-12 Score=151.10 Aligned_cols=212 Identities=18% Similarity=0.230 Sum_probs=144.9
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEE-----EEe-
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCS- 397 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi-----~is- 397 (794)
+...+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|+.+++..- .|.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 344678899999999999988776642 234667899999999999999999998764221 010
Q ss_pred cchhHHHh-------------hccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHH
Q 003806 398 ASEFVELY-------------VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (794)
Q Consensus 398 ~se~~~~~-------------vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (794)
|..+.... ...+...++++.+.+.. ....||+|||+|.|.. ..+|.||
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLL 141 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALL 141 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHH
Confidence 11100000 11223455665554432 2345999999998742 3467788
Q ss_pred HhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCC
Q 003806 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (794)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfS 540 (794)
..++... ..+++|.+++..+.+.+.+.+ |. ..+.|..++..+...+++..+.+.++.+.++ .+..++..+.| +
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G-d 214 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG-S 214 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 8887533 456666677777778888876 54 3688999999999999998888777665544 46778887776 7
Q ss_pred HHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
.+++.+.++..+.. ....|+.+++...+
T Consensus 215 lr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 215 MRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 88888888765443 23458887776654
No 134
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.44 E-value=8.2e-13 Score=145.20 Aligned_cols=220 Identities=22% Similarity=0.317 Sum_probs=133.6
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCcEEEE--e
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC--S 397 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-------gvpfi~i--s 397 (794)
.+..|++|+|++++++.|.-..- + ....++||+||||||||++|+++|+-+ +.|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~---------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---D---------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---c---------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999987754221 0 011469999999999999999999987 3322111 1
Q ss_pred c-chh---------------HHHhhccchHHHHH--HHHHH-------------HhcCCEEEEEcccchhhhccCCCccc
Q 003806 398 A-SEF---------------VELYVGMGASRVRD--LFARA-------------KKEAPSIIFIDEIDAVAKSRDGRFRI 446 (794)
Q Consensus 398 ~-se~---------------~~~~vG~~~~~vr~--lF~~A-------------r~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (794)
+ .++ .+.-.+.+..++-. .|+.+ ......+|||||++.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~------- 143 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH------- 143 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-------
Confidence 0 000 00001111111100 01111 0111249999999987532
Q ss_pred cchHHHHHHHHHHHHhhcCCC-----------CCCcEEEEEEcCCCC-CCCccccCCCccceEEEeecCCH-HhHHHHHH
Q 003806 447 VSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGREAILK 513 (794)
Q Consensus 447 ~~~~e~~~~Ln~LL~emdg~~-----------~~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~v~~Pd~-~eR~eILk 513 (794)
+.+.|+..|+.-. ....+++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++
T Consensus 144 --------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 144 --------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred --------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 3344555554211 235789999999754 68999998 9999999998876 89999998
Q ss_pred HHHhcCC-----------------------------CCCcccc--chhHHhhhcC-CCCHHHHHHHHHHHHHHHHhhCCc
Q 003806 514 VHVSKKE-----------------------------LPLAKDI--DLGDIASMTT-GFTGADLANLVNEAALLAGRLNKV 561 (794)
Q Consensus 514 ~~l~~~~-----------------------------l~l~~dv--dl~~LA~~t~-GfSgaDL~~Lv~eAal~A~r~~~~ 561 (794)
....... +.+++++ .+..++..+. .-.-+++. +++.|...|..+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCC
Confidence 7543210 0011100 0112222222 12345666 899999999999999
Q ss_pred cccHHHHHHHHHHHh
Q 003806 562 VVEKIDFIHAVERSI 576 (794)
Q Consensus 562 ~It~~d~~~Al~rvi 576 (794)
.|+.+|+..+..-++
T Consensus 293 ~V~~~Di~~~~~~vl 307 (334)
T PRK13407 293 AVGRSHLRSVATMAL 307 (334)
T ss_pred eeCHHHHHHHHHHhh
Confidence 999999988775544
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.41 E-value=3.1e-12 Score=153.74 Aligned_cols=165 Identities=22% Similarity=0.339 Sum_probs=115.9
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCC-CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-----Hhh
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----LYV 406 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~p-kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-----~~v 406 (794)
.|+|++++++.|.+.+...+..-. ....| ..+||+||||||||.+|+++|..++.+|+.++++++.+ .+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 489999999999888865432100 01234 35999999999999999999999999999999998854 333
Q ss_pred ccchHHH-----HHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC--CC-------CCcE
Q 003806 407 GMGASRV-----RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DS-------NSAV 472 (794)
Q Consensus 407 G~~~~~v-----r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~-------~~~V 472 (794)
|.....+ ..+.+..+....|||||||||.+.+ .+.+.|++.||.- .. -.++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 3221111 1223333455568999999999742 2456666666521 11 1467
Q ss_pred EEEEEcCCC-------------------------CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc
Q 003806 473 IVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (794)
Q Consensus 473 IVIaATN~p-------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (794)
++|+|||.- ..+.|+++. |+|.+|.|++.+.++..+|+..++.+
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 899999832 124577776 99999999999999999999887653
No 136
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.41 E-value=1.3e-11 Score=146.11 Aligned_cols=219 Identities=23% Similarity=0.303 Sum_probs=136.9
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEE
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~ 395 (794)
..+.+|++++|++.+.+.+...+. ...|..++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999998887654331 1235579999999999999999998654 468999
Q ss_pred EecchhH-------HHhhccchHH----HHHHHHH----------HHhcCCEEEEEcccchhhhccCCCccccchHHHHH
Q 003806 396 CSASEFV-------ELYVGMGASR----VRDLFAR----------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (794)
Q Consensus 396 is~se~~-------~~~vG~~~~~----vr~lF~~----------Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (794)
++|..+. ..+.+..... .+..++. .......+|||||++.|....+ .
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q------------~ 283 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ------------N 283 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH------------H
Confidence 9987642 1112211110 1111110 0012345999999998753321 1
Q ss_pred HHHHHHHhh-----------------------cCCCCCCcEEEEEEc-CCCCCCCccccCCCccceEEEeecCCHHhHHH
Q 003806 455 TLNQLLTEM-----------------------DGFDSNSAVIVLGAT-NRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (794)
Q Consensus 455 ~Ln~LL~em-----------------------dg~~~~~~VIVIaAT-N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~e 510 (794)
.+..++..- ..-.....+++|++| +.++.++++|++ ||. .+.+++++.++..+
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 222222210 000112345666554 668889999987 876 67888999999999
Q ss_pred HHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHh--------hCCccccHHHHHHHHHH
Q 003806 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR--------LNKVVVEKIDFIHAVER 574 (794)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r--------~~~~~It~~d~~~Al~r 574 (794)
|++.++.+.++.+.++ .++.|++.+. .++...+++..+...+.. .....|+.+|+.+++..
T Consensus 361 Il~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 361 IVLNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 9999988765555443 4566777664 456665666655444321 12347899999998854
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.40 E-value=3.7e-12 Score=153.63 Aligned_cols=163 Identities=27% Similarity=0.365 Sum_probs=116.6
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCC---CCCC-eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH---
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--- 404 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~---~~pk-gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~--- 404 (794)
+.|+|++++++.+.+.+...+ .|. ..|. .+||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~-------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR-------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh-------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 358899998888887765432 222 2344 48999999999999999999999999999999998652
Q ss_pred --hhccc-----hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC---------C
Q 003806 405 --YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (794)
Q Consensus 405 --~vG~~-----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~ 468 (794)
+.|.. ......+.+..+....+||+|||+|.+.+ ...+.|++.||... .
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHHHHHhhccCeeecCCCcccC
Confidence 22221 11222344455566678999999998742 24456666665321 1
Q ss_pred CCcEEEEEEcCCCC-------------------------CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc
Q 003806 469 NSAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (794)
Q Consensus 469 ~~~VIVIaATN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (794)
-.++++|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+.+
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 13578899998631 24566665 99999999999999999999988763
No 138
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.39 E-value=1.2e-11 Score=138.23 Aligned_cols=229 Identities=21% Similarity=0.259 Sum_probs=162.8
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecc
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~s 399 (794)
-.+..||++++.-+.-.....-....-..| ...-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~-------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP-------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc-------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 456789999887665443333333323332 1233459999999999999999998876 3468999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
.|...++......-.+-|+.-. +-.+++||+|+.+.++.. ...+.-.++|.+.. ..+-+|+.+..
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------~qeefFh~FN~l~~-------~~kqIvltsdr 217 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------TQEEFFHTFNALLE-------NGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------HHHHHHHHHHHHHh-------cCCEEEEEcCC
Confidence 9988776554443444566555 445999999999875431 23344444554443 34467777767
Q ss_pred CCCCC---CccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHH
Q 003806 480 RSDVL---DPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (794)
Q Consensus 480 ~pd~L---DpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~ 554 (794)
.|..+ .|.|.+ ||. ..+.+.+|+.+.|.+||+..+...++.+++++ ...+|..... +.++|..+++.....
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 77655 578877 775 57788899999999999999988888887765 5667776654 789999999998888
Q ss_pred HHhhCCccccHHHHHHHHHHHhcccc
Q 003806 555 AGRLNKVVVEKIDFIHAVERSIAGIE 580 (794)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi~g~e 580 (794)
|...++ .||...+.+++.......+
T Consensus 294 a~~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 294 ALFTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHhcCc-cCcHHHHHHHHHHhhcccc
Confidence 866554 8999999999987665443
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2e-11 Score=144.24 Aligned_cols=210 Identities=20% Similarity=0.266 Sum_probs=144.3
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEE--------EE-
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI--------SC- 396 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi--------~i- 396 (794)
..+.+|+||+|++.+++.|...+.. .+.|..+|||||+|+|||++|+.+|..+.+.-. .|
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 3567899999999999988776641 346777999999999999999999998753210 00
Q ss_pred ecchhHHH-------hh---ccchHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 397 SASEFVEL-------YV---GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 397 s~se~~~~-------~v---G~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
+|..+.+. +. ..+...++++.+.+... ...|++|||+|.+.. ...+.|+..
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK~ 144 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLKT 144 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHHH
Confidence 11111100 00 12245677777766432 234999999998842 345788888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHH
Q 003806 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (794)
|+... ..+++|.+|+.+..|-++|++ |. ..+.+..++.++....++..+.+.++.+.++ .++.|+..+.| +.+
T Consensus 145 LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~g-dlr 217 (614)
T PRK14971 145 LEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKADG-GMR 217 (614)
T ss_pred HhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 88433 456677777777888899987 53 4799999999999999999888877765443 46778887755 777
Q ss_pred HHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
++.++++.....+. .. |+.+++.+.+
T Consensus 218 ~al~~Lekl~~y~~---~~-It~~~V~~~l 243 (614)
T PRK14971 218 DALSIFDQVVSFTG---GN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHhcc---CC-ccHHHHHHHh
Confidence 77777766655542 22 6665555443
No 140
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.35 E-value=4.7e-12 Score=139.74 Aligned_cols=222 Identities=21% Similarity=0.271 Sum_probs=139.0
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCcEEEEec
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSA 398 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-------gvpfi~is~ 398 (794)
.+...|++|+|++++|..|.-.+ .+| ...|+||.||+|||||++||+++..+ +.||. +..
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 34678999999999999775432 222 23589999999999999999997754 23443 111
Q ss_pred -------chhHHH-------------------hhccchHHH------HHHHHHHH---------hcCCEEEEEcccchhh
Q 003806 399 -------SEFVEL-------------------YVGMGASRV------RDLFARAK---------KEAPSIIFIDEIDAVA 437 (794)
Q Consensus 399 -------se~~~~-------------------~vG~~~~~v------r~lF~~Ar---------~~aP~ILfIDEIDaL~ 437 (794)
+++... -.|....++ ...|.... .....+|||||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 001000 011122221 11122111 1123599999999885
Q ss_pred hccCCCccccchHHHHHHHHHHHHhhcC---------C--CCCCcEEEEEEcCCCC-CCCccccCCCccceEEEeecCC-
Q 003806 438 KSRDGRFRIVSNDEREQTLNQLLTEMDG---------F--DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPD- 504 (794)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~Ln~LL~emdg---------~--~~~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~v~~Pd- 504 (794)
... .+.|+..|+. . .....+++|++.|..+ .+.++|+. ||...+.+..|+
T Consensus 158 ~~~---------------Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 158 DHL---------------VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred HHH---------------HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 432 2334444432 1 1235788999888765 68999998 999999999997
Q ss_pred HHhHHHHHHHHHhcCC-----------------------------CCCcccc--chhHHhhhcCCCCHHHHHHHHHHHHH
Q 003806 505 KIGREAILKVHVSKKE-----------------------------LPLAKDI--DLGDIASMTTGFTGADLANLVNEAAL 553 (794)
Q Consensus 505 ~~eR~eILk~~l~~~~-----------------------------l~l~~dv--dl~~LA~~t~GfSgaDL~~Lv~eAal 553 (794)
.+.+.+|++....... +.+++.+ -+..++..+.--+.+--..+++-|..
T Consensus 221 ~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA 300 (350)
T CHL00081 221 PELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKA 300 (350)
T ss_pred hHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHH
Confidence 5899999987542110 0111110 01223333333356666778888888
Q ss_pred HHHhhCCccccHHHHHHHHHHHhc
Q 003806 554 LAGRLNKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~rvi~ 577 (794)
.|..+++..|+.+|+..+..-++.
T Consensus 301 ~Aal~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 301 LAAFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999877664
No 141
>PRK09087 hypothetical protein; Validated
Probab=99.35 E-value=5.8e-12 Score=131.60 Aligned_cols=172 Identities=17% Similarity=0.193 Sum_probs=118.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCcc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~ 445 (794)
+.++|+||+|+|||+|+++++...++.++ +..++...+. ..... .+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC-------
Confidence 34999999999999999999998776544 3333332221 11111 3788999997621
Q ss_pred ccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC---CCccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCC
Q 003806 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKE 520 (794)
Q Consensus 446 ~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~ 520 (794)
...+ +-.+++.+. ...+.+||+++..|.. ..+.|++ ||. ..+.+..|+.++|.+|++.++...+
T Consensus 102 --~~~~----lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 102 --DETG----LFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred --CHHH----HHHHHHHHH---hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 1122 333333322 2344567766655543 3677877 774 7899999999999999999999887
Q ss_pred CCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 521 LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 521 l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
+.+++++ ++.|+++..+ +.+.+..+++.....+...+ ..||...+.+++..
T Consensus 171 ~~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~ 221 (226)
T PRK09087 171 LYVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNE 221 (226)
T ss_pred CCCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHh
Confidence 7776664 7788888876 77888877777665555444 56898888888865
No 142
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.5e-11 Score=131.90 Aligned_cols=218 Identities=21% Similarity=0.285 Sum_probs=150.8
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-----EEEEecchhHHHh
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISCSASEFVELY 405 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-----fi~is~se~~~~~ 405 (794)
-+.+.+.++..+.+..++... +....|.++++|||||||||.+++.++.++.-+ +++++|-...+.|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~--------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPA--------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHH--------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 344888898777777664332 223456679999999999999999999987433 8999997664421
Q ss_pred ---------------hccchHHHH-HHHHHHH-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC
Q 003806 406 ---------------VGMGASRVR-DLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (794)
Q Consensus 406 ---------------vG~~~~~vr-~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~ 468 (794)
.|.....+- .+++... ....-||++||+|.|....+ .++..|+...+..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~-- 153 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN-- 153 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc--
Confidence 112222222 2222222 23456999999999975432 5677777766544
Q ss_pred CCcEEEEEEcCCC---CCCCccccCCCcc-ceEEEeecCCHHhHHHHHHHHHhcC--CCCCccccchhHH---hhhcCCC
Q 003806 469 NSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDI---ASMTTGF 539 (794)
Q Consensus 469 ~~~VIVIaATN~p---d~LDpALlRpGRF-dr~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~~L---A~~t~Gf 539 (794)
..+|.+|+.+|.. +.+||.+.+ +| ...|.|++++.+|..+|++...... ...+.+++ ++.+ +....|
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G- 229 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG- 229 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-
Confidence 5678999999876 578888877 44 3458999999999999999887642 11122222 3333 334444
Q ss_pred CHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
..+-.-.+++.|+..|.+++...++.+++..|.+.
T Consensus 230 DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEE 264 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Confidence 56667788999999999999999999999999544
No 143
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.33 E-value=1.7e-11 Score=135.12 Aligned_cols=219 Identities=22% Similarity=0.273 Sum_probs=135.3
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCcEE--------
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI-------- 394 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-------gvpfi-------- 394 (794)
.|..|+|++++|..|.-.+ -+| ...++||.|+||+|||++++++++-+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999998764322 122 13479999999999999999999866 33332
Q ss_pred E-Eecch----------------hHHHhhccchHHHHHHH--HHH-------------HhcCCEEEEEcccchhhhccCC
Q 003806 395 S-CSASE----------------FVELYVGMGASRVRDLF--ARA-------------KKEAPSIIFIDEIDAVAKSRDG 442 (794)
Q Consensus 395 ~-is~se----------------~~~~~vG~~~~~vr~lF--~~A-------------r~~aP~ILfIDEIDaL~~~r~~ 442 (794)
. .+|.. |.+.-.|..+.++-... +.+ .+....+|||||++.+...
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~--- 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH--- 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH---
Confidence 0 01110 01111111111111111 110 0122359999999987532
Q ss_pred CccccchHHHHHHHHHHHHhhcCC-----------CCCCcEEEEEEcCCCC-CCCccccCCCccceEEEeecCCH-HhHH
Q 003806 443 RFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGRE 509 (794)
Q Consensus 443 ~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~v~~Pd~-~eR~ 509 (794)
+.+.|+..|+.- .....+++|+++|..+ .++++|+. ||...+.++.|+. ++|.
T Consensus 147 ------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 147 ------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 223444444321 1134688999988655 68999998 9999999999876 8888
Q ss_pred HHHHHHHhcC-----------------------------CCCCcccc--chhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 510 AILKVHVSKK-----------------------------ELPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 510 eILk~~l~~~-----------------------------~l~l~~dv--dl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
+|++...... .+.+++++ .+..++..+..-+.+.-..+++-|...|..+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 9988743210 01111111 0222333443335677778889999999999
Q ss_pred CCccccHHHHHHHHHHHhc
Q 003806 559 NKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 559 ~~~~It~~d~~~Al~rvi~ 577 (794)
++..|+.+|+..+..-++.
T Consensus 293 GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 293 GRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999877664
No 144
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.32 E-value=2.6e-11 Score=113.07 Aligned_cols=124 Identities=40% Similarity=0.610 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhccchHH---HHHHHHHHHhcCCEEEEEcccchhh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASR---VRDLFARAKKEAPSIIFIDEIDAVA 437 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~~~~~---vr~lF~~Ar~~aP~ILfIDEIDaL~ 437 (794)
..++++++||||||||++++.++..+ +.+++.+++.++........... ....+..+....+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 89999999887765433222111 1222334445678899999999872
Q ss_pred hccCCCccccchHHHHHHHHHHHHhhcCC-CCCCcEEEEEEcCCCC--CCCccccCCCccceEEEee
Q 003806 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGF-DSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVE 501 (794)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-~~~~~VIVIaATN~pd--~LDpALlRpGRFdr~I~v~ 501 (794)
.. ....+.+++..+... ....++.+|+++|... .+++.+.. ||+.++.++
T Consensus 98 ~~------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 11 112222333322111 1236788889998876 67777776 888666654
No 145
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.28 E-value=1.3e-11 Score=134.58 Aligned_cols=187 Identities=18% Similarity=0.236 Sum_probs=120.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH--hhccchHHH----------HHHHHHHHhcCCEEEEEcc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--YVGMGASRV----------RDLFARAKKEAPSIIFIDE 432 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~--~vG~~~~~v----------r~lF~~Ar~~aP~ILfIDE 432 (794)
.+++||.||||||||++|+.+|.+++.|++.+++...... ++|...-.+ ...+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4579999999999999999999999999999998766553 444321111 122334433 467999999
Q ss_pred cchhhhccCCCccccchHHHHHHHHHHHHh-----hc----CCCCCCcEEEEEEcCCCC------------CCCccccCC
Q 003806 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MD----GFDSNSAVIVLGATNRSD------------VLDPALRRP 491 (794)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----md----g~~~~~~VIVIaATN~pd------------~LDpALlRp 491 (794)
+|...++ ....++.+|.. +. .+.....+.||||.|..+ .+++|++.
T Consensus 143 in~a~p~------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAGRPD------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhccCHH------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9986322 23455566652 11 122345789999999854 46888888
Q ss_pred CccceEEEeecCCHHhHHHHHHHHHhcCCCCCc-ccc--chhHHhh----------hcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 492 GRFDRVVMVETPDKIGREAILKVHVSKKELPLA-KDI--DLGDIAS----------MTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 492 GRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~-~dv--dl~~LA~----------~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
||-.++.++.|+.++-.+|+........ ... +.+ .+-.+|. ...++|++.+..+++.+.+.
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~~~-~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f---- 283 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKGFD-DTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIF---- 283 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccCCC-ccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhh----
Confidence 9988889999999999999987643211 000 000 0111222 23356777777776655433
Q ss_pred CCccccHHHHHHHHHHHhc
Q 003806 559 NKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 559 ~~~~It~~d~~~Al~rvi~ 577 (794)
+ .++..|++..+.
T Consensus 284 ~------~~~~~a~~~~~~ 296 (327)
T TIGR01650 284 D------HDIALAFRLTFL 296 (327)
T ss_pred C------ccHHHHHHHHHH
Confidence 1 256777776653
No 146
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.27 E-value=5e-11 Score=141.66 Aligned_cols=215 Identities=23% Similarity=0.283 Sum_probs=137.9
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc--------------------
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-------------------- 389 (794)
.|.+|+|++.+|..|.-.. .+| ...+|||.||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999997664322 122 12369999999999999999999876
Q ss_pred ---------------CCcEEEEecchhHHHhhccc--hHHH--------HHHHHHHHhcCCEEEEEcccchhhhccCCCc
Q 003806 390 ---------------EVPFISCSASEFVELYVGMG--ASRV--------RDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (794)
Q Consensus 390 ---------------gvpfi~is~se~~~~~vG~~--~~~v--------r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~ 444 (794)
..||+.+.++...+..+|.- ...+ ..++..| .-.|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence 35777766554433333321 0000 0111111 2249999999998532
Q ss_pred cccchHHHHHHHHHHHHhhcCC-----------CCCCcEEEEEEcCCC-CCCCccccCCCccceEEEeecCC-HHhHHHH
Q 003806 445 RIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETPD-KIGREAI 511 (794)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~p-d~LDpALlRpGRFdr~I~v~~Pd-~~eR~eI 511 (794)
+.+.|+..|+.- .....+++|+|+|.. ..+.++|+. ||+.+|.++.|. .+++.++
T Consensus 142 ----------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 142 ----------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ----------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 335555555421 112468999999964 368889998 999888888764 5777777
Q ss_pred HHHHHhcC-----------------------------CCCCccccchhHHhhhc--CCC-CHHHHHHHHHHHHHHHHhhC
Q 003806 512 LKVHVSKK-----------------------------ELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLN 559 (794)
Q Consensus 512 Lk~~l~~~-----------------------------~l~l~~dvdl~~LA~~t--~Gf-SgaDL~~Lv~eAal~A~r~~ 559 (794)
++..+... .+.+.++ .++.++..+ .|. +.+....+++-|...|..++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g 288 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDG 288 (633)
T ss_pred HHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 76533210 0111111 122232222 234 35666678888888999999
Q ss_pred CccccHHHHHHHHHHHhc
Q 003806 560 KVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 560 ~~~It~~d~~~Al~rvi~ 577 (794)
+..|+.+|+.+|+.-++.
T Consensus 289 r~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLP 306 (633)
T ss_pred CCcCCHHHHHHHHHHHhh
Confidence 999999999999988774
No 147
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.27 E-value=5.9e-11 Score=127.68 Aligned_cols=219 Identities=19% Similarity=0.231 Sum_probs=143.1
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecch--
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-- 400 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se-- 400 (794)
+.-+|++.+++.|..+-+.+..|.. ..+.++||+|++|.|||++++.++... .+|++.+.+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 4468999999999999888888865 334569999999999999999998643 36888876532
Q ss_pred ----hHHH---hhc------c-chHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC
Q 003806 401 ----FVEL---YVG------M-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (794)
Q Consensus 401 ----~~~~---~vG------~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 466 (794)
|... ..| . ....-.......+...+.+|+|||++.+.. +.....+.++|.|-...+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~N-- 177 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGN-- 177 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhh--
Confidence 2110 001 1 112223334555667788999999999753 334455666665555433
Q ss_pred CCCCcEEEEEEcCCCCC--CCccccCCCccceEEEeecC-CHHhHHHHHHHHHhcCCCCCccccchh----HHhhhcCCC
Q 003806 467 DSNSAVIVLGATNRSDV--LDPALRRPGRFDRVVMVETP-DKIGREAILKVHVSKKELPLAKDIDLG----DIASMTTGF 539 (794)
Q Consensus 467 ~~~~~VIVIaATN~pd~--LDpALlRpGRFdr~I~v~~P-d~~eR~eILk~~l~~~~l~l~~dvdl~----~LA~~t~Gf 539 (794)
+-+-.++.+++-.-... -|+.+.+ ||+ .+.++.. ..++...++..+-....+.-..+.... .|-..+.|
T Consensus 178 eL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G- 253 (302)
T PF05621_consen 178 ELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG- 253 (302)
T ss_pred ccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-
Confidence 22245566665433232 3777777 998 4445543 234556677666554333333333333 34456777
Q ss_pred CHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
+.+++.++++.|+..|.+.+++.||.+.++.
T Consensus 254 ~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 254 LIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred chHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 5678999999999999999999999887765
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.25 E-value=9.1e-11 Score=143.32 Aligned_cols=197 Identities=26% Similarity=0.343 Sum_probs=125.8
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH---
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~--- 404 (794)
+.|+|++++.+.+.+.+...+..-. .-..|.+ +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4689999999888777754321100 0124665 7999999999999999999988 468899999988652
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--C-----
Q 003806 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--S----- 468 (794)
Q Consensus 405 ---------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~----- 468 (794)
|+|..... .+.+..+.+.+|||+|||||...+ .+.+.|++.+|.-. .
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~---------------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHP---------------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcCH---------------HHHHHHHHHhhcceeecCCCcE
Confidence 33332211 233444567779999999986532 23455555554221 0
Q ss_pred --CCcEEEEEEcCCCC-----------------------------CCCccccCCCccceEEEeecCCHHhHHHHHHHHHh
Q 003806 469 --NSAVIVLGATNRSD-----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (794)
Q Consensus 469 --~~~VIVIaATN~pd-----------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~ 517 (794)
-.+.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 14678999998521 14466666 887 889999999999999988775
Q ss_pred cC--------CCCCc-cccchhHHhhhcCC--CCHHHHHHHHHHHH
Q 003806 518 KK--------ELPLA-KDIDLGDIASMTTG--FTGADLANLVNEAA 552 (794)
Q Consensus 518 ~~--------~l~l~-~dvdl~~LA~~t~G--fSgaDL~~Lv~eAa 552 (794)
.. ++.+. ++-..+.|+....+ +-.+.|.++++.-.
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 41 22111 11123445554422 34566666665543
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.21 E-value=2e-10 Score=140.90 Aligned_cols=202 Identities=21% Similarity=0.312 Sum_probs=127.6
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH----
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~---- 404 (794)
+.|+|++++.+.+.+.+...+..-. -..+|...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 5699999999988887765321000 001233458999999999999999999976 579999999887542
Q ss_pred -hhccch-----HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC--CC-------C
Q 003806 405 -YVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DS-------N 469 (794)
Q Consensus 405 -~vG~~~-----~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~-------~ 469 (794)
..|... ..-..+....+....+||+||||+.+.+ .+.+.|++.++.- .. -
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 222111 1112233444455557999999997632 2345555555421 11 1
Q ss_pred CcEEEEEEcCCCC-------------------------CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc------
Q 003806 470 SAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK------ 518 (794)
Q Consensus 470 ~~VIVIaATN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~------ 518 (794)
.+.+||+|||... .+.|.|+. |+|.++.+.+++.++..+|+...+..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999731 13355665 99999999999999999998877652
Q ss_pred -CCCC--CccccchhHHhhhcC--CCCHHHHHHHHHHHHHH
Q 003806 519 -KELP--LAKDIDLGDIASMTT--GFTGADLANLVNEAALL 554 (794)
Q Consensus 519 -~~l~--l~~dvdl~~LA~~t~--GfSgaDL~~Lv~eAal~ 554 (794)
.++. +.++ .++.|+.... .+..+.|+++++.....
T Consensus 785 ~~~~~l~i~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 785 ERKITLELSDA-ALDFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred HCCCeecCCHH-HHHHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 1111 1111 2344555422 45567777777665543
No 150
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.21 E-value=2.7e-10 Score=131.58 Aligned_cols=212 Identities=22% Similarity=0.293 Sum_probs=131.7
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc------------------
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------------------ 389 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el------------------ 389 (794)
...|+||.|++.+++.+.-.+ .....++|+||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 348999999999877654332 234579999999999999999998632
Q ss_pred ----------CCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHH
Q 003806 390 ----------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (794)
Q Consensus 390 ----------gvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 459 (794)
..||...+++......+|.+...-...+..|. ..+|||||++.+... .+..|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~~---------------~~~~L 315 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKRS---------------VLDAL 315 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCHH---------------HHHHH
Confidence 23555444443333333433211122344443 359999999987432 22333
Q ss_pred HHhhcCCC-----------CCCcEEEEEEcCCC------C-----------------CCCccccCCCccceEEEeecCCH
Q 003806 460 LTEMDGFD-----------SNSAVIVLGATNRS------D-----------------VLDPALRRPGRFDRVVMVETPDK 505 (794)
Q Consensus 460 L~emdg~~-----------~~~~VIVIaATN~p------d-----------------~LDpALlRpGRFdr~I~v~~Pd~ 505 (794)
+..|+... ...++.+|+++|.. + .|...|+. |||.++.++.++.
T Consensus 316 ~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~ 393 (499)
T TIGR00368 316 REPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPP 393 (499)
T ss_pred HHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCH
Confidence 33333211 12468999999862 1 47788888 9999999997654
Q ss_pred Hh-------------HHHHHHHHHhc----CCC---CCccccchhH----------------HhhhcCCCCHHHHHHHHH
Q 003806 506 IG-------------REAILKVHVSK----KEL---PLAKDIDLGD----------------IASMTTGFTGADLANLVN 549 (794)
Q Consensus 506 ~e-------------R~eILk~~l~~----~~l---~l~~dvdl~~----------------LA~~t~GfSgaDL~~Lv~ 549 (794)
.+ |..+.+..-.. .+. .+..++.-.. -+....++|.+....+++
T Consensus 394 ~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr 473 (499)
T TIGR00368 394 EKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK 473 (499)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 32 12222211110 010 1111111111 122334689999999999
Q ss_pred HHHHHHHhhCCccccHHHHHHHHH
Q 003806 550 EAALLAGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~ 573 (794)
-|..+|..++...|+.+|+.+|+.
T Consensus 474 vArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 474 VARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999984
No 151
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.20 E-value=4.2e-10 Score=123.64 Aligned_cols=133 Identities=30% Similarity=0.381 Sum_probs=88.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHH------HHHHH--hcCC--EEEEEcccch
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDL------FARAK--KEAP--SIIFIDEIDA 435 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~l------F~~Ar--~~aP--~ILfIDEIDa 435 (794)
.++||.||||||||++|+++|..++.+|+.+.|.......-..+...+... |.... -... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 469999999999999999999999999999999865432111111111111 00000 0001 4999999987
Q ss_pred hhhccCCCccccchHHHHHHHHHHHHhhcC----------CCCCCcEEEEEEcC-----CCCCCCccccCCCccceEEEe
Q 003806 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDG----------FDSNSAVIVLGATN-----RSDVLDPALRRPGRFDRVVMV 500 (794)
Q Consensus 436 L~~~r~~~~~~~~~~e~~~~Ln~LL~emdg----------~~~~~~VIVIaATN-----~pd~LDpALlRpGRFdr~I~v 500 (794)
..+ .+.+.|+..|+. +.-..+++||+|.| ....|++|+++ ||-..+.+
T Consensus 124 a~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 124 APP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred CCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 542 233555555543 33456789999999 45678999998 99889999
Q ss_pred ecCCHHhHHHHHHHH
Q 003806 501 ETPDKIGREAILKVH 515 (794)
Q Consensus 501 ~~Pd~~eR~eILk~~ 515 (794)
+.|+.++-+.++..+
T Consensus 187 ~yp~~~~e~~~i~~~ 201 (329)
T COG0714 187 DYPDSEEEERIILAR 201 (329)
T ss_pred CCCCchHHHHHHHHh
Confidence 999554444444443
No 152
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.20 E-value=5.3e-10 Score=132.18 Aligned_cols=103 Identities=24% Similarity=0.370 Sum_probs=67.6
Q ss_pred cEEEEEEcCCC--CCCCccccCCCccc---eEEEeec--CC-HHhHHHHHHHH---HhcC-CCC-CccccchhHHhh---
Q 003806 471 AVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--PD-KIGREAILKVH---VSKK-ELP-LAKDIDLGDIAS--- 534 (794)
Q Consensus 471 ~VIVIaATN~p--d~LDpALlRpGRFd---r~I~v~~--Pd-~~eR~eILk~~---l~~~-~l~-l~~dvdl~~LA~--- 534 (794)
.+.||+++|.. ..+||+|+. ||+ ..+.++. |+ .+.+.++.+.. +++. .++ ++++ .+..+.+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~-Av~~Li~~~~ 344 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRD-AVEEIVREAQ 344 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHH-HHHHHHHHHH
Confidence 67899999975 578999998 998 5565543 44 45555554433 3222 122 2221 1222321
Q ss_pred hcC------CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 003806 535 MTT------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 535 ~t~------GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (794)
+.. ..+.++|.+++++|...|..+++..|+.+|+.+|++...
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 111 245799999999998888888889999999999987654
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=3.6e-10 Score=138.37 Aligned_cols=167 Identities=24% Similarity=0.339 Sum_probs=110.4
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCC-CeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH--
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~p-kgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~-- 404 (794)
++.|+|++++.+.+.+.+...+..-. .-..| ..+||+||||||||++|+++|..+ +.+|+.++++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 45689999999988887765431100 00123 358999999999999999999876 568999999988652
Q ss_pred ---hhccch-----HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC--C-------
Q 003806 405 ---YVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--D------- 467 (794)
Q Consensus 405 ---~vG~~~-----~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~------- 467 (794)
..|... ..-..+....+....+||+|||++.+.+ ...+.|+..++.- .
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~---------------~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP---------------DVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH---------------HHHHHHHHHHhhCceecCCceEE
Confidence 122110 1111122223334448999999987632 2345555555421 1
Q ss_pred CCCcEEEEEEcCCC-------------------------CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc
Q 003806 468 SNSAVIVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (794)
Q Consensus 468 ~~~~VIVIaATN~p-------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (794)
.-.+.+||+|||.. ..+.|+|+. |+|.++.+.+++.+...+|++.++..
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 11346788899863 124467776 99999999999999999998887754
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.20 E-value=2.9e-10 Score=138.97 Aligned_cols=166 Identities=23% Similarity=0.314 Sum_probs=113.9
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH----
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE---- 403 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pk-gVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~---- 403 (794)
+.|+|++++++.+...+...+..-. ....|. .+||+||||||||++|+++|..+ +.+++.+++++|.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5689999999988887754321100 012344 47999999999999999999987 47899999988754
Q ss_pred -Hhhccc-----hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC---------C
Q 003806 404 -LYVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (794)
Q Consensus 404 -~~vG~~-----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~ 468 (794)
.+.|.. ......+.+..+....+||+|||+|.+.+ .+.+.|++.|+.-. .
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------DIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------HHHHHHHHHhccCceecCCCcEEe
Confidence 222221 11122345555556568999999998642 34566666666321 1
Q ss_pred CCcEEEEEEcCCCCC-------------------------------------CCccccCCCccceEEEeecCCHHhHHHH
Q 003806 469 NSAVIVLGATNRSDV-------------------------------------LDPALRRPGRFDRVVMVETPDKIGREAI 511 (794)
Q Consensus 469 ~~~VIVIaATN~pd~-------------------------------------LDpALlRpGRFdr~I~v~~Pd~~eR~eI 511 (794)
-.+.++|.|||.... +.|.++. |+|.+|.|.+.+.++..+|
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHH
Confidence 246899999985311 1245555 9999999999999999999
Q ss_pred HHHHHhc
Q 003806 512 LKVHVSK 518 (794)
Q Consensus 512 Lk~~l~~ 518 (794)
++..+.+
T Consensus 728 v~~~l~~ 734 (821)
T CHL00095 728 AEIMLKN 734 (821)
T ss_pred HHHHHHH
Confidence 9887764
No 155
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.19 E-value=2e-10 Score=126.04 Aligned_cols=68 Identities=38% Similarity=0.565 Sum_probs=53.8
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecchhHH
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~se~~~ 403 (794)
...+.++|+.++++..--+++..+..+ -..+++||.||||||||.||-++|+++| +||+.++++++.+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred eccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 345689999999999998988877643 2568999999999999999999999997 8999999988743
No 156
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.18 E-value=5.4e-11 Score=109.53 Aligned_cols=129 Identities=33% Similarity=0.417 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCc---EEEEecchhHHH--------------hhccchHHHHHHHHHHHhcCCEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEFVEL--------------YVGMGASRVRDLFARAKKEAPSI 427 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvp---fi~is~se~~~~--------------~vG~~~~~vr~lF~~Ar~~aP~I 427 (794)
+..++|+||||||||++++.+|..+..+ ++.++++..... .........+..+..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 888888754331 12344566778888888887899
Q ss_pred EEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecC
Q 003806 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (794)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~P 503 (794)
|+|||++.+....... ............. .....+..+|+++|......+..+++ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA------LLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH------HHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999999986432110 0000000000111 12234578888888632333334333 88888887655
No 157
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.5e-11 Score=139.17 Aligned_cols=161 Identities=28% Similarity=0.425 Sum_probs=117.9
Q ss_pred ccccCChHhHHHHHHHHHHh----cChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---CcEEEEecchhHHH
Q 003806 332 ADVAGVDEAKEELEEIVEFL----RSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL 404 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~L----k~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg---vpfi~is~se~~~~ 404 (794)
+.|+|++++.+.+...+..- ++|. +|-..+||.||+|+|||.|||++|..+. ..++.+++|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 46999999999888877642 2321 2223578899999999999999999986 89999999999873
Q ss_pred ------------hhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC---C
Q 003806 405 ------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---N 469 (794)
Q Consensus 405 ------------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~---~ 469 (794)
|+|..+. -.+-+..+.+..|||++|||++-. -.++|-||+-||.-.- .
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH---------------pdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH---------------PDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC---------------HHHHHHHHHHhcCCeeecCC
Confidence 4444332 234455566667999999998753 2477888888874211 1
Q ss_pred ------CcEEEEEEcCCC----------------------------CCCCccccCCCccceEEEeecCCHHhHHHHHHHH
Q 003806 470 ------SAVIVLGATNRS----------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (794)
Q Consensus 470 ------~~VIVIaATN~p----------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~ 515 (794)
.+.++|.|||-- ....|+++. |+|.+|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 357899999841 012456665 89999999999999999998887
Q ss_pred Hhc
Q 003806 516 VSK 518 (794)
Q Consensus 516 l~~ 518 (794)
+..
T Consensus 705 L~~ 707 (786)
T COG0542 705 LNR 707 (786)
T ss_pred HHH
Confidence 754
No 158
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=5.2e-10 Score=124.19 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=124.1
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------cEEEE---
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC--- 396 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------pfi~i--- 396 (794)
.+..+++|+|++++++.|...+. ..+.|..+||+||+|+|||++|+.+|..+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 46789999999999998888764 2356778999999999999999999998754 21110
Q ss_pred -ecchhHHH--------h-h-------------ccchHHHHHHHHHHH----hcCCEEEEEcccchhhhccCCCccccch
Q 003806 397 -SASEFVEL--------Y-V-------------GMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSN 449 (794)
Q Consensus 397 -s~se~~~~--------~-v-------------G~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 449 (794)
.|..+... + + .-+...+|++-+... .....|++|||+|.+..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 11111100 0 0 011244454443332 23456999999999842
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccch
Q 003806 450 DEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDL 529 (794)
Q Consensus 450 ~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl 529 (794)
...|.||..++.. ..+.++|..|+.++.+.|.+++ |. ..+.+++|+.++..++|+...... .+.++ .+
T Consensus 156 ----~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~--~~~~~-~~ 223 (351)
T PRK09112 156 ----NAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ--GSDGE-IT 223 (351)
T ss_pred ----HHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc--CCCHH-HH
Confidence 3457788888853 3445666667778888899987 65 599999999999999998743221 11122 24
Q ss_pred hHHhhhcCCCCHHHHHHHHHH
Q 003806 530 GDIASMTTGFTGADLANLVNE 550 (794)
Q Consensus 530 ~~LA~~t~GfSgaDL~~Lv~e 550 (794)
..+++.+.| +++...++++.
T Consensus 224 ~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 224 EALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHHHcCC-CHHHHHHHHhc
Confidence 566666666 56655555544
No 159
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.18 E-value=3.1e-10 Score=131.88 Aligned_cols=223 Identities=20% Similarity=0.183 Sum_probs=131.8
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-cEEEE---ecchhHHHhhcc
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISC---SASEFVELYVGM 408 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-pfi~i---s~se~~~~~vG~ 408 (794)
++.|++.+|..+.-.+---..+..-.....+...+|||+|+||||||++|++++..... +|... ++..+.......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 58899998876633221110010000112233457999999999999999999987653 33321 222221100000
Q ss_pred ---chHHHH-HHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-----------CCCcEE
Q 003806 409 ---GASRVR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVI 473 (794)
Q Consensus 409 ---~~~~vr-~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~VI 473 (794)
+...++ ..+..| ...+++|||+|.+.... ...|+..|+.-. -+..+.
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~~---------------q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDDSD---------------RTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCCHHH---------------HHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 000000 011112 23599999999975321 233344443211 135688
Q ss_pred EEEEcCCCC-------------CCCccccCCCccceEEEe-ecCCHHhHHHHHHHHHhcCC---------C--CC-----
Q 003806 474 VLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKE---------L--PL----- 523 (794)
Q Consensus 474 VIaATN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~eILk~~l~~~~---------l--~l----- 523 (794)
||||+|..+ .|++++++ |||..+.+ +.|+.+...+|.++.+.... . .+
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l 423 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFL 423 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHH
Confidence 999999753 58999999 99986555 78999988888887543211 0 00
Q ss_pred -----------ccccc---hhHHh-----hh----------cCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 524 -----------AKDID---LGDIA-----SM----------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 524 -----------~~dvd---l~~LA-----~~----------t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
.+.+. .+.+. .+ ..+.|++.+..+++-|...|..+.+..|+.+|+.+|++-
T Consensus 424 ~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 424 RKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 00010 11110 01 235688999999999999999999999999999999864
Q ss_pred H
Q 003806 575 S 575 (794)
Q Consensus 575 v 575 (794)
+
T Consensus 504 ~ 504 (509)
T smart00350 504 L 504 (509)
T ss_pred H
Confidence 3
No 160
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.17 E-value=8.5e-11 Score=136.65 Aligned_cols=211 Identities=23% Similarity=0.307 Sum_probs=128.4
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh-----------cCCcEEEEe
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE-----------AEVPFISCS 397 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e-----------lgvpfi~is 397 (794)
.+|+|++|.+.+.+.+.+.+..+. ..+..|||+|++||||+++|+++... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 569999999998888887765432 23446999999999999999999876 467999999
Q ss_pred cchhHHH-----hhccchH--------HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc
Q 003806 398 ASEFVEL-----YVGMGAS--------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (794)
Q Consensus 398 ~se~~~~-----~vG~~~~--------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd 464 (794)
|+.+.+. ..|.... .-..+|+.|.. ..||||||+.|....+ ..|-.+|.+-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q------------~kLl~~L~e~~ 350 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLPLQ------------TRLLRVLEEKE 350 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHHHH------------HHHHhhhhcCe
Confidence 9876432 1221110 11235555543 4899999999864322 22223333211
Q ss_pred --CCCC----CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeecCCHHhHHH----HHHHHHhc----CCCCC
Q 003806 465 --GFDS----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KELPL 523 (794)
Q Consensus 465 --g~~~----~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~----~~l~l 523 (794)
.... ...+.+|++||.. |. .+...|+|.. .+.+..|...+|.+ ++.+++.+ .+.++
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 1111 2356899999865 22 2223344432 56778888888763 44555543 23333
Q ss_pred ccccc------hhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHH
Q 003806 524 AKDID------LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKID 567 (794)
Q Consensus 524 ~~dvd------l~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d 567 (794)
.+++- +..|..+.+.-+.++|+|++++++..+.......++.++
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~ 477 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQF 477 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHH
Confidence 33221 134555565567899999999998865322223444444
No 161
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.16 E-value=1.3e-10 Score=134.97 Aligned_cols=214 Identities=21% Similarity=0.293 Sum_probs=130.3
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhHHH
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL 404 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~~~ 404 (794)
..+|+|++|.+...+.+.+.+..+. ..+..|||+|++||||+++|+++... .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 3679999999998888877765432 23456999999999999999999865 4679999999876432
Q ss_pred -----hhccch--------HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCCC-
Q 003806 405 -----YVGMGA--------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS- 468 (794)
Q Consensus 405 -----~vG~~~--------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~- 468 (794)
..|... ..-..+|+.|. ...||||||+.|....+ ..|-.+|.+-. ....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~~Q------------~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLPLQ------------TRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHHHH------------HHHHHHHhcCcEEecCCC
Confidence 122110 01123455554 34899999999864322 22223333211 1111
Q ss_pred ---CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeecCCHHhHHH----HHHHHHhcC----CCCCccccchh
Q 003806 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSKK----ELPLAKDIDLG 530 (794)
Q Consensus 469 ---~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~~----~l~l~~dvdl~ 530 (794)
...+.+|++||..- . .+...|+|.. .+.+..|...+|.+ ++.+++.+. +.++.++ .+.
T Consensus 343 ~~~~~dvRiIaat~~~l--~-~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~-a~~ 418 (526)
T TIGR02329 343 EPVPVDVRVVAATHCAL--T-TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA-AAQ 418 (526)
T ss_pred ceeeecceEEeccCCCH--H-HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH-HHH
Confidence 12468999998651 1 1112233321 46788888888763 344444432 2222222 122
Q ss_pred H-------HhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 531 D-------IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 531 ~-------LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
. |..+.+.-+-++|++++++++..+.......|+.+++..
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 2 666666667899999999998876432335677766543
No 162
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=1.1e-09 Score=122.15 Aligned_cols=186 Identities=18% Similarity=0.158 Sum_probs=123.8
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcE-------E----
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------I---- 394 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpf-------i---- 394 (794)
..+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567899999999999998876642 35677899999999999999999998763210 0
Q ss_pred E---E-ecchhHH-----------Hh---hcc--------chHHHHHHHHHHH----hcCCEEEEEcccchhhhccCCCc
Q 003806 395 S---C-SASEFVE-----------LY---VGM--------GASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRF 444 (794)
Q Consensus 395 ~---i-s~se~~~-----------~~---vG~--------~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~ 444 (794)
. + .|..... .. ... ....+|++-+.+. ...|.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0 0 1111100 00 011 2345666555443 34577999999998742
Q ss_pred cccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCc
Q 003806 445 RIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA 524 (794)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~ 524 (794)
...|.||..++. ...++++|.+|+.++.+.+.+++ |. ..+.+++|+.++..+++...... .
T Consensus 156 ---------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~- 216 (365)
T PRK07471 156 ---------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----L- 216 (365)
T ss_pred ---------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----C-
Confidence 455788888874 33456777889889889888877 53 58999999999998888775421 1
Q ss_pred cccchhHHhhhcCCCCHHHHHHHH
Q 003806 525 KDIDLGDIASMTTGFTGADLANLV 548 (794)
Q Consensus 525 ~dvdl~~LA~~t~GfSgaDL~~Lv 548 (794)
.+..+..++..+.| ++....+++
T Consensus 217 ~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 217 PDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 11122456666666 555444444
No 163
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.13 E-value=1.8e-09 Score=111.95 Aligned_cols=195 Identities=23% Similarity=0.327 Sum_probs=133.7
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~ 401 (794)
..+.+.+.+++|.+.+|+.|.+-...+.. ..+..+|||+|..|||||+|+||+-++. +..++.|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 44679999999999999998776554432 4566789999999999999999998775 677899988877
Q ss_pred HHHhhccchHHHHHHHHHHHhc-CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--CCCcEEEEEEc
Q 003806 402 VELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGAT 478 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~~~~VIVIaAT 478 (794)
.. +-.+++..+.. ..-|||+|++-- . .++ .....|-..+||-- ...+|+|.||+
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e-~gd---~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF----------E-EGD---DAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC----------C-CCc---hHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 43 44556666543 345999999721 0 111 12234455555532 24689999999
Q ss_pred CCCCCCCccc--------------------cCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccc-cchhHH--hhh
Q 003806 479 NRSDVLDPAL--------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDI--ASM 535 (794)
Q Consensus 479 N~pd~LDpAL--------------------lRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vdl~~L--A~~ 535 (794)
|+-..|+... --+.||...+.+.+++.++..+|+..++.+.++.++++ .+.+.+ |..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9865554211 12349999999999999999999999998877765421 222222 333
Q ss_pred cCCCCHHHHHHHHHH
Q 003806 536 TTGFTGADLANLVNE 550 (794)
Q Consensus 536 t~GfSgaDL~~Lv~e 550 (794)
..|-||+-..+.++.
T Consensus 262 rg~RSGR~A~QF~~~ 276 (287)
T COG2607 262 RGGRSGRVAWQFIRD 276 (287)
T ss_pred cCCCccHhHHHHHHH
Confidence 445566655555543
No 164
>PHA02244 ATPase-like protein
Probab=99.12 E-value=1.4e-09 Score=120.21 Aligned_cols=149 Identities=24% Similarity=0.328 Sum_probs=91.9
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh--h
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--V 406 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~--v 406 (794)
+.+.-+.+....+.....+..++.. +.+|||+||||||||++|+++|..++.||+.++.. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 3344344444444455444444332 34599999999999999999999999999999842 2211 1
Q ss_pred c--cchHHHH-HHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh-----hcC-CCCCCcEEEEEE
Q 003806 407 G--MGASRVR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDG-FDSNSAVIVLGA 477 (794)
Q Consensus 407 G--~~~~~vr-~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----mdg-~~~~~~VIVIaA 477 (794)
| ....... .-|-.|.. ..++|+|||++.+.+.. ...|+.++.. .++ .....++.+|+|
T Consensus 161 G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~v------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIAT 227 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPEA------------LIIINSAIANKFFDFADERVTAHEDFRVISA 227 (383)
T ss_pred ccccccccccchHHHHHhh-cCCEEEEeCcCcCCHHH------------HHHHHHHhccCeEEecCcEEecCCCEEEEEe
Confidence 1 0001111 12333332 35699999999864322 2334444432 111 122457899999
Q ss_pred cCCC-----------CCCCccccCCCccceEEEeecCCHH
Q 003806 478 TNRS-----------DVLDPALRRPGRFDRVVMVETPDKI 506 (794)
Q Consensus 478 TN~p-----------d~LDpALlRpGRFdr~I~v~~Pd~~ 506 (794)
+|.+ ..|++|++. ||- .|.++.|+..
T Consensus 228 sN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~~ 264 (383)
T PHA02244 228 GNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEKI 264 (383)
T ss_pred eCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcHH
Confidence 9973 578999998 995 7899999843
No 165
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.12 E-value=1.8e-09 Score=114.25 Aligned_cols=191 Identities=14% Similarity=0.184 Sum_probs=117.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC-cEE--EE-e----cchhHHH---hhccc---h------HHHHHHH-HHHHhcC
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEV-PFI--SC-S----ASEFVEL---YVGMG---A------SRVRDLF-ARAKKEA 424 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgv-pfi--~i-s----~se~~~~---~vG~~---~------~~vr~lF-~~Ar~~a 424 (794)
..++|+||+|+|||++++.+++++.. .+. .+ + ..++... ..|.. . ..+.+.+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 222 11 1 1122111 11211 1 1122222 2233566
Q ss_pred CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC--CCCCCC----ccccCCCccceEE
Q 003806 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN--RSDVLD----PALRRPGRFDRVV 498 (794)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN--~pd~LD----pALlRpGRFdr~I 498 (794)
+++|+|||+|.+... ....+..+..... .....+.|+.+.. ..+.+. ..+.+ |+...+
T Consensus 124 ~~vliiDe~~~l~~~------------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 124 RALLVVDEAQNLTPE------------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CeEEEEECcccCCHH------------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 789999999987421 1122333222211 1222233333322 112221 12333 777788
Q ss_pred EeecCCHHhHHHHHHHHHhcCCC----CCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 499 MVETPDKIGREAILKVHVSKKEL----PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~l----~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
.+++.+.++..+++...+...+. .+.+ -.++.|.+.+.|. ++.|..+++.+...|..++...|+.+++.+++..
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~-~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSE-GAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCH-HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999999999999988865432 2322 2577788999996 5779999999999999999999999999999875
No 166
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=8.9e-11 Score=133.37 Aligned_cols=212 Identities=25% Similarity=0.348 Sum_probs=134.4
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
...+|+|++|...+..++.+.+.. .++.+..|||.|.+||||.++|+++-+.. +-||+.++|.-+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 457899999999987777766543 34566789999999999999999997754 67999999987654
Q ss_pred H-------------hhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhh--cCCCC
Q 003806 404 L-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFDS 468 (794)
Q Consensus 404 ~-------------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~~~ 468 (794)
. |.|....--..+|+.|... -||+|||..+...-+ .-|-..|++= ....+
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~LQ------------aKLLRVLQEkei~rvG~ 374 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLPLQ------------AKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCHHHH------------HHHHHHHhhceEEecCC
Confidence 2 2222111133566666554 899999988753322 2233344431 11111
Q ss_pred ----CCcEEEEEEcCCCCCCCccccCCCccc-------eEEEeecCCHHhHHH----HHHHHHhc----CC--CC-Cccc
Q 003806 469 ----NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KE--LP-LAKD 526 (794)
Q Consensus 469 ----~~~VIVIaATN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~e----ILk~~l~~----~~--l~-l~~d 526 (794)
...|.||||||+. |-.+ ..-|+|- .++.+..|...+|.+ +..+++.+ .+ ++ +.++
T Consensus 375 t~~~~vDVRIIAATN~n--L~~~-i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LEKM-IAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcC--HHHH-HhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 2468999999985 2222 2334443 266777898888863 33333332 21 11 2222
Q ss_pred cchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHH
Q 003806 527 IDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (794)
Q Consensus 527 vdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (794)
.+..+.+..+.-+-++|+|++.++...+. ....|+..|+.
T Consensus 452 -a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 452 -ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred -HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 25556666665688999999999987543 33446666655
No 167
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.11 E-value=1.9e-09 Score=122.84 Aligned_cols=214 Identities=17% Similarity=0.148 Sum_probs=123.9
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecch-hHHHhhccc
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-FVELYVGMG 409 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is~se-~~~~~vG~~ 409 (794)
.++|.+++.+.+...+ -...++||+||||||||++|++++..++. +|....+.- ......|..
T Consensus 21 ~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 4778887776554433 22346999999999999999999987643 555444321 112222211
Q ss_pred -hHHH--HHHHHHHHhc---CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC----C---C-CcEEEE
Q 003806 410 -ASRV--RDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----S---N-SAVIVL 475 (794)
Q Consensus 410 -~~~v--r~lF~~Ar~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----~---~-~~VIVI 475 (794)
.... ..-|...... ...+||+|||..+.+ .+.+.||..|+.-. . + ...+++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 0000 1122222111 233999999976543 34466666663211 0 1 112445
Q ss_pred EEcCCCC---CCCccccCCCccceEEEeecCC-HHhHHHHHHHHHhcCCCCCc--cccc---------------------
Q 003806 476 GATNRSD---VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLA--KDID--------------------- 528 (794)
Q Consensus 476 aATN~pd---~LDpALlRpGRFdr~I~v~~Pd-~~eR~eILk~~l~~~~l~l~--~dvd--------------------- 528 (794)
+|||... ...+++.. ||-..+.+++|+ .++-.+++.........+.. .-+.
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5557432 12348887 997788888886 45557777654221001110 0011
Q ss_pred --hhHHhhh---c---CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcc
Q 003806 529 --LGDIASM---T---TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 529 --l~~LA~~---t---~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 578 (794)
+..+... + ...|++--..+++-|...|...++..|+.+|+. .+.-+++.
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 1122221 2 237888889999999999999999999999999 66555543
No 168
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.10 E-value=2.6e-09 Score=113.07 Aligned_cols=100 Identities=21% Similarity=0.215 Sum_probs=73.2
Q ss_pred EEEEEEcCC-------------CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCC
Q 003806 472 VIVLGATNR-------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (794)
Q Consensus 472 VIVIaATN~-------------pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (794)
-+||.|||+ |.-+++.|+. |+ ..|..-+.+.++.++|++...+..++.+.++ .++.++.....
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~-a~~~l~~~gt~ 401 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEE-ALDLLAEIGTS 401 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHH-HHHHHHhhccc
Confidence 467778876 4556667764 43 2445556788899999999998887766544 46677776655
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 003806 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (794)
Q Consensus 539 fSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (794)
-|-+-.-+++.-|.+.|...+++.|..+|++++-+--
T Consensus 402 tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 402 TSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred hhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 5667777777778899988899999999998876543
No 169
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.9e-09 Score=128.37 Aligned_cols=208 Identities=24% Similarity=0.322 Sum_probs=143.7
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEE
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFI 394 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi 394 (794)
....-.++-|+|.++..+++.+++. . +...+-+|+|+||+|||.++..+|... +..++
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~---R---------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILS---R---------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHh---c---------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 3345678999999986666555542 2 334468899999999999999999864 45678
Q ss_pred EEecchhHH--HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcE
Q 003806 395 SCSASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (794)
Q Consensus 395 ~is~se~~~--~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 472 (794)
+++.+.++. .|-|+.+.+++.+.+...+..+.||||||||.+.+..... +. .-..-|-|.-.+. +..+
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G~---a~DAaNiLKPaLA----RGeL 300 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---GG---AMDAANLLKPALA----RGEL 300 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---cc---ccchhhhhHHHHh----cCCe
Confidence 888888875 7999999999999999998889999999999997553321 10 0112233333332 4567
Q ss_pred EEEEEcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC----CCCCccccchhHHhhhc-----CC
Q 003806 473 IVLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMT-----TG 538 (794)
Q Consensus 473 IVIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~t-----~G 538 (794)
-+|+||...+ .-|+||-| ||. .|.|.-|+.++-..||+-.-.+. ++.+.++ .+..-+..+ .-
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~-Al~aAv~LS~RYI~dR 376 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDE-ALVAAVTLSDRYIPDR 376 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHH-HHHHHHHHHHhhcccC
Confidence 8898885432 34899999 998 78999999999999998765442 3333322 222222222 23
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 003806 539 FTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 539 fSgaDL~~Lv~eAal~A~r~ 558 (794)
|=+.---.++.+|+......
T Consensus 377 ~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 377 FLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred CCCchHHHHHHHHHHHHHhc
Confidence 34445567888887666543
No 170
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.3e-09 Score=118.93 Aligned_cols=169 Identities=17% Similarity=0.303 Sum_probs=115.2
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc--------EEEEecchh
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FISCSASEF 401 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp--------fi~is~se~ 401 (794)
+|+||+|++.+++.|...+. ..+.|..+||+||+|+|||++|+++|..+.+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 69999999999998877663 23567789999999999999999999976331 22222100
Q ss_pred HHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 003806 402 VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (794)
. ..-+...++++.+.+.. ....|++||++|.+.. ...|.||..++. +..++++|.+
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEe--pp~~t~~il~ 129 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEE--PPKGVFIILL 129 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEE
Confidence 0 01133567776665432 2345999999988742 245789998884 4456666667
Q ss_pred cCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCC
Q 003806 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (794)
Q Consensus 478 TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (794)
|+.++.+.|.+++ |. ..+.+..|+.++....+...+.. +. +...+.++..+.|
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~----~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND----IK-EEEKKSAIAFSDG 182 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC----CC-HHHHHHHHHHcCC
Confidence 7788999999988 43 48999999998887777655421 11 1224455555555
No 171
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.07 E-value=3.4e-10 Score=132.15 Aligned_cols=209 Identities=23% Similarity=0.320 Sum_probs=128.2
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~ 402 (794)
.+..+|++++|.+...+++.+.+..+. .....|||+|++|||||++|+++.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 445789999999998888877765543 234469999999999999999998764 5799999998764
Q ss_pred HHh-----hccchHH-------HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcC--CC-
Q 003806 403 ELY-----VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--FD- 467 (794)
Q Consensus 403 ~~~-----vG~~~~~-------vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg--~~- 467 (794)
+.. .|..... ....|+.| ...+|||||||.|....+ ..|+..++. +.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAFQ---------------AKLLRVLQEGEFER 321 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHHH---------------HHHHHHHhcCcEEE
Confidence 321 1211000 01123333 345999999999864322 233333321 11
Q ss_pred --C----CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeecCCHHhHH----HHHHHHHhcC----C--CCCc
Q 003806 468 --S----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVSKK----E--LPLA 524 (794)
Q Consensus 468 --~----~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~----eILk~~l~~~----~--l~l~ 524 (794)
. ...+.+|++|+.. +.. +...|+|.. .+.+..|...+|. .++.+++.+. + ..+.
T Consensus 322 ~~~~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred CCCCceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 1247899998764 111 222334421 4566677666653 4455555431 1 1122
Q ss_pred cccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHH
Q 003806 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (794)
Q Consensus 525 ~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (794)
++ .++.|..+.+.-+.++|+++++.|+..+ ....|+.+|+.
T Consensus 399 ~~-a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 399 PS-AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 22 3566677776668899999999998765 34567777754
No 172
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.06 E-value=1.5e-10 Score=118.76 Aligned_cols=119 Identities=28% Similarity=0.461 Sum_probs=68.1
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc--------------------
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-------------------- 389 (794)
.|+||+|++.+|+.|.-... | ..++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999998865442 2 3579999999999999999998743
Q ss_pred --------CCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHH
Q 003806 390 --------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (794)
Q Consensus 390 --------gvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (794)
..||.....+.-....+|.+....-..+..|.. .|||+||+-.+. ..++..|.+
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef~---------------~~vld~Lr~ 128 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEFD---------------RSVLDALRQ 128 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS----------------HHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhcC---------------HHHHHHHHH
Confidence 124444433322233333322111112233333 399999997653 345666666
Q ss_pred hhcCCC-----------CCCcEEEEEEcCC
Q 003806 462 EMDGFD-----------SNSAVIVLGATNR 480 (794)
Q Consensus 462 emdg~~-----------~~~~VIVIaATN~ 480 (794)
-|+.-. -...+++|+|+|.
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 664211 1246789999985
No 173
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.06 E-value=1.3e-09 Score=123.24 Aligned_cols=155 Identities=27% Similarity=0.430 Sum_probs=90.2
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------cEEEEe----cc
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCS----AS 399 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------pfi~is----~s 399 (794)
++++++.++..+.+... +. ..++++|+||||||||++|+++|..+.. .++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~---L~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKR---LT-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHH---Hh-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 77888877765554333 32 2457999999999999999999987742 123332 22
Q ss_pred hhHHHhh--ccch----HHHHHHHHHHHh--cCCEEEEEcccchhhhccC-CCccc-cchHHHHHHHHH--HHHh--hcC
Q 003806 400 EFVELYV--GMGA----SRVRDLFARAKK--EAPSIIFIDEIDAVAKSRD-GRFRI-VSNDEREQTLNQ--LLTE--MDG 465 (794)
Q Consensus 400 e~~~~~v--G~~~----~~vr~lF~~Ar~--~aP~ILfIDEIDaL~~~r~-~~~~~-~~~~e~~~~Ln~--LL~e--mdg 465 (794)
+|+..+. +.+. ..+.++...|+. ..|+|||||||+.....+- +.+.. ...+.+.+.... ...+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 3333221 1111 234455666664 3589999999997543321 10000 000100000000 0011 123
Q ss_pred CCCCCcEEEEEEcCCCC----CCCccccCCCccceEEEeec
Q 003806 466 FDSNSAVIVLGATNRSD----VLDPALRRPGRFDRVVMVET 502 (794)
Q Consensus 466 ~~~~~~VIVIaATN~pd----~LDpALlRpGRFdr~I~v~~ 502 (794)
+....++.||||+|..+ .+|.||+| ||. .|.+.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 55567899999999987 89999999 996 455554
No 174
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.06 E-value=1.8e-10 Score=110.28 Aligned_cols=113 Identities=33% Similarity=0.370 Sum_probs=69.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH--HhhccchHH-H-----HHHHHHHHhcCCEEEEEcccchhhh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--LYVGMGASR-V-----RDLFARAKKEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~--~~vG~~~~~-v-----r~lF~~Ar~~aP~ILfIDEIDaL~~ 438 (794)
+|||+||||||||++|+.+|..++.+++.++++...+ .+.|.-.-. . ...+..+. ..++|++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 5899999999999999999999999999998876432 122211000 0 00000011 157899999998753
Q ss_pred ccCCCccccchHHHHHHHHHHHHhhcCC-------C-CCC------cEEEEEEcCCCC----CCCccccCCCcc
Q 003806 439 SRDGRFRIVSNDEREQTLNQLLTEMDGF-------D-SNS------AVIVLGATNRSD----VLDPALRRPGRF 494 (794)
Q Consensus 439 ~r~~~~~~~~~~e~~~~Ln~LL~emdg~-------~-~~~------~VIVIaATN~pd----~LDpALlRpGRF 494 (794)
.+.-..++.++..-.-. . ... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 22233344444431100 0 011 489999999988 89999998 76
No 175
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.05 E-value=8.5e-10 Score=128.49 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=125.4
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
...+|++++|.+...+.+.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 45689999999987776666554322 123459999999999999999986543 47999999987643
Q ss_pred H-----hhccch-------HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhh--cCCC--
Q 003806 404 L-----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFD-- 467 (794)
Q Consensus 404 ~-----~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~~-- 467 (794)
. ..|... ..-..+|+.|. .+.|||||||.+....+ ..+-.+++.- ....
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRMQ------------AKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHHH------------HHHHHHHhcCCcccCCCC
Confidence 2 122111 01123455443 35899999999864322 2233333321 0011
Q ss_pred --CCCcEEEEEEcCCCC-------CCCccccCCCccceEEEeecCCHHhHHH----HHHHHH----hcCCC---CCcccc
Q 003806 468 --SNSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHV----SKKEL---PLAKDI 527 (794)
Q Consensus 468 --~~~~VIVIaATN~pd-------~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l----~~~~l---~l~~dv 527 (794)
....+.||+||+.+- .+.+.|.. |+. .+.+..|...+|.+ ++..++ .+.+. .+.++
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~- 409 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD- 409 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 123578899887641 22333433 443 47788888888763 222333 23322 12222
Q ss_pred chhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 003806 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (794)
Q Consensus 528 dl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (794)
.+..|..+.+.-+.++|++++.+|+..+ ....|+.+|+
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 2455666665557799999999888765 2345665554
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.05 E-value=2.3e-09 Score=123.66 Aligned_cols=210 Identities=24% Similarity=0.307 Sum_probs=129.4
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC------------------
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------ 390 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg------------------ 390 (794)
..|.++.|+..+++.+.- .+.....++|+||||||||++++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l--------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI--------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhe--------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 478999999887765421 123446799999999999999999987531
Q ss_pred ----------CcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHH
Q 003806 391 ----------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (794)
Q Consensus 391 ----------vpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (794)
.||.....+--....+|.+...-...+..|... +|||||++.+.. .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~---------------~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER---------------RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH---------------HHHHHHH
Confidence 122211111111123343322223455656554 999999987642 2334444
Q ss_pred HhhcCCC-----------CCCcEEEEEEcCCCC---------------------CCCccccCCCccceEEEeecCCHH--
Q 003806 461 TEMDGFD-----------SNSAVIVLGATNRSD---------------------VLDPALRRPGRFDRVVMVETPDKI-- 506 (794)
Q Consensus 461 ~emdg~~-----------~~~~VIVIaATN~pd---------------------~LDpALlRpGRFdr~I~v~~Pd~~-- 506 (794)
+-|+.-. ...++.+|+|+|... .|..+++. |||.++.++.|+.+
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 4442111 135689999999752 46778888 99999999988532
Q ss_pred --------hHHHHHHHHH-------hcCCCCCccccch--------------h--HHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 507 --------GREAILKVHV-------SKKELPLAKDIDL--------------G--DIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 507 --------eR~eILk~~l-------~~~~l~l~~dvdl--------------~--~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
...+|-+... ...+ .+...+.- . .-+....|.|.+....+++-|...|
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~-~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiA 472 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQN-KLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIA 472 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHH-HHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1222221110 0000 01111110 0 1122445789999999999999999
Q ss_pred HhhCCccccHHHHHHHHH
Q 003806 556 GRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 556 ~r~~~~~It~~d~~~Al~ 573 (794)
..++++.|+.+|+.+|+.
T Consensus 473 DL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 473 DIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHcCCCCCCHHHHHHHHH
Confidence 999999999999999985
No 177
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=4.6e-10 Score=125.40 Aligned_cols=200 Identities=26% Similarity=0.368 Sum_probs=126.1
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh----cCCcEEEEecchhH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFV 402 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e----lgvpfi~is~se~~ 402 (794)
....+++++|.+..-+++.+-+..+ .+....||++|++||||+++|+.+... .+.||+.++|+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567999999998777777766542 233456999999999999999999643 46799999999875
Q ss_pred HH-------------hhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcC----
Q 003806 403 EL-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG---- 465 (794)
Q Consensus 403 ~~-------------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg---- 465 (794)
+. |.| ....-..+|++|... +||+|||+.+...-+ ..|+..||.
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q---------------~kLl~~le~g~~~ 203 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPPEGQ---------------EKLLRVLEEGEYR 203 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCHhHH---------------HHHHHHHHcCceE
Confidence 52 222 122234566666554 999999999864322 234444432
Q ss_pred -C----CCCCcEEEEEEcCCCCCCCccccC-CCccc--eEEEeecCCHHhHHH--------HHHHHHhcCCCCCcccc--
Q 003806 466 -F----DSNSAVIVLGATNRSDVLDPALRR-PGRFD--RVVMVETPDKIGREA--------ILKVHVSKKELPLAKDI-- 527 (794)
Q Consensus 466 -~----~~~~~VIVIaATN~pd~LDpALlR-pGRFd--r~I~v~~Pd~~eR~e--------ILk~~l~~~~l~l~~dv-- 527 (794)
. .....|.+|+|||.. ++.+++. ..-+. ..+.|..|+..+|.+ .++.++++.+.++....
T Consensus 204 rvG~~~~~~~dVRli~AT~~~--l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTED--LEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred ecCCCCCcCCCceeeeccccC--HHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 1 123568999999743 3333322 00111 144567777777752 23444455555544433
Q ss_pred chhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 003806 528 DLGDIASMTTGFTGADLANLVNEAALLAGR 557 (794)
Q Consensus 528 dl~~LA~~t~GfSgaDL~~Lv~eAal~A~r 557 (794)
.+..+-.....-+.++|+|+|..++..+..
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 234444444334789999999999988843
No 178
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=3.5e-09 Score=116.01 Aligned_cols=183 Identities=15% Similarity=0.222 Sum_probs=122.7
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-----------------
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------------- 392 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp----------------- 392 (794)
.|++|+|++++++.|...+.. .+.|..+||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999887752 3556789999999999999999999876321
Q ss_pred -EEEEecc-----h-hHHH---hhc--------cchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchH
Q 003806 393 -FISCSAS-----E-FVEL---YVG--------MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSND 450 (794)
Q Consensus 393 -fi~is~s-----e-~~~~---~vG--------~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 450 (794)
++.+... . .... ..| -....+|++.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1111110 0 0000 000 112356666555432 3456999999998842
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchh
Q 003806 451 EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLG 530 (794)
Q Consensus 451 e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~ 530 (794)
...|.||..|+... +.++|..|+.++.|-|.+++ | ...+.+++|+.++..++|........ .+.+..
T Consensus 139 ---~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--R-cq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~ 205 (314)
T PRK07399 139 ---AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--R-CQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFP 205 (314)
T ss_pred ---HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--h-ceEEecCCCCHHHHHHHHHHhhcccc----chhHHH
Confidence 34588999988543 33566677889999999988 5 45899999999999988887643211 122246
Q ss_pred HHhhhcCCCCHHHHHHHHH
Q 003806 531 DIASMTTGFTGADLANLVN 549 (794)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~ 549 (794)
.++....| +++...++++
T Consensus 206 ~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 206 ELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHcCC-CHHHHHHHHH
Confidence 67777766 5666555554
No 179
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.04 E-value=2.7e-09 Score=107.75 Aligned_cols=144 Identities=18% Similarity=0.251 Sum_probs=97.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCc------------------------EEEEecchhHHHhhccchHHHHHHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLFA 418 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvp------------------------fi~is~se~~~~~vG~~~~~vr~lF~ 418 (794)
+.|..+||+||+|+|||++|++++.++... +..+.... ...+...++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 567789999999999999999999986432 11111100 0123356666676
Q ss_pred HHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCcc
Q 003806 419 RAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (794)
Q Consensus 419 ~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRF 494 (794)
.+.. ....||+|||+|.+.. ...+.||..|+.. ....++|.+||.++.+.+++.+ |.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~ 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE---------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc
Confidence 6653 3356999999998853 2346788888753 2345666667777899999988 54
Q ss_pred ceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCC
Q 003806 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (794)
Q Consensus 495 dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (794)
..+.+.+|+.++..++++.. + +.+ ..+..++..+.|
T Consensus 148 -~~~~~~~~~~~~~~~~l~~~----g--i~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 148 -QVLPFPPLSEEALLQWLIRQ----G--ISE-EAAELLLALAGG 183 (188)
T ss_pred -EEeeCCCCCHHHHHHHHHHc----C--CCH-HHHHHHHHHcCC
Confidence 48999999999988888775 2 222 235556665554
No 180
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.04 E-value=1.2e-09 Score=127.06 Aligned_cols=198 Identities=22% Similarity=0.289 Sum_probs=123.2
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH--
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~-- 404 (794)
++.+++|.+...+.+.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57899999998888887776532 235579999999999999999998764 579999999877432
Q ss_pred ---hhccchH-------HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCC----C
Q 003806 405 ---YVGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD----S 468 (794)
Q Consensus 405 ---~vG~~~~-------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~----~ 468 (794)
..|.... .....|+.|. ...|||||||.|....+ ..+-.++..-. ... .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLALQ------------AKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHHH------------HHHHHHHhcCCEeeCCCCcce
Confidence 1221100 0112344443 45899999999864321 22222333211 011 1
Q ss_pred CCcEEEEEEcCCCC-------CCCccccCCCccceEEEeecCCHHhHHH----HHHHHHhc----CC---CCCccccchh
Q 003806 469 NSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDIDLG 530 (794)
Q Consensus 469 ~~~VIVIaATN~pd-------~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l~~----~~---l~l~~dvdl~ 530 (794)
...+.+|++||..- .+.+.|.. |+. .+.+..|...+|.+ ++++++.+ .+ ..+.++ .+.
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~-a~~ 395 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA-AQA 395 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-HHH
Confidence 23678999998751 12222322 222 56788888888753 33333332 11 112222 356
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHH
Q 003806 531 DIASMTTGFTGADLANLVNEAALLAG 556 (794)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~eAal~A~ 556 (794)
.|..+...-+.++|++++++|+..+.
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 66777766688999999999998874
No 181
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.04 E-value=6.3e-09 Score=120.99 Aligned_cols=206 Identities=22% Similarity=0.339 Sum_probs=132.9
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHh----hh------------------CCCC-CCeEEEEcCCCChHHH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYI----RL------------------GARP-PRGVLLVGLPGTGKTL 380 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~----~l------------------g~~~-pkgVLL~GPPGTGKT~ 380 (794)
....+-.|.|+.|-+.+-+.+...+... +|..|. ++ -.+| .+-+||+||||-|||+
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 4456778999999998887655443321 111111 11 1123 3558899999999999
Q ss_pred HHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHH--------hcCCEEEEEcccchhhhccCCCccccchHHH
Q 003806 381 LAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK--------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (794)
Q Consensus 381 LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar--------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (794)
||+.+|..+|..++.+++|+=.. +..++.-+..|- ...|..|+|||||--.
T Consensus 342 LAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------------- 400 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------------- 400 (877)
T ss_pred HHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---------------
Confidence 99999999999999999987532 333444333332 2568899999998422
Q ss_pred HHHHHHHHHhhc-------CCCC---------C---CcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHH
Q 003806 453 EQTLNQLLTEMD-------GFDS---------N---SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (794)
Q Consensus 453 ~~~Ln~LL~emd-------g~~~---------~---~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk 513 (794)
...++.++..+. |-.. + -.-.||+.||.. --|||+----|...|.|.+|...-..+-|+
T Consensus 401 ~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969|consen 401 RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHH
Confidence 122333333332 1110 0 012577888853 456663222478899999999888888889
Q ss_pred HHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 514 ~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
..+.+.++.. |...|+..++ ++..||++.+|...++|...
T Consensus 479 ~IC~rE~mr~----d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 479 EICHRENMRA----DSKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHhhhcCCC----CHHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 9888877643 3444444443 34569999999988888654
No 182
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.03 E-value=1e-09 Score=120.93 Aligned_cols=193 Identities=21% Similarity=0.256 Sum_probs=115.0
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH-----h
Q 003806 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (794)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~-----~ 405 (794)
++|.+.+.+.+.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|..+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677777776666555432 234569999999999999999997644 579999999865331 1
Q ss_pred hccch-------HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CC----CCCCcE
Q 003806 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GF----DSNSAV 472 (794)
Q Consensus 406 vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~----~~~~~V 472 (794)
.|... .....+|+.|. .++|||||||.|....+ ..+-.++..-. .. .....+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLVQ------------EKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHHH------------HHHHHHHHcCcEEecCCCceeccce
Confidence 12110 01112344443 45999999999864322 22222332211 00 112467
Q ss_pred EEEEEcCCC-------CCCCccccCCCccceEEEeecCCHHhHHH----HHHHHHhc----CCCC----CccccchhHHh
Q 003806 473 IVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELP----LAKDIDLGDIA 533 (794)
Q Consensus 473 IVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l~~----~~l~----l~~dvdl~~LA 533 (794)
.+|++||.. ..+.+.|.. ||. .+.+..|...+|.+ ++++++.. .+.+ +.++ .+..|.
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~~L~ 211 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-AREQLL 211 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHHHHH
Confidence 899999864 123344443 443 46677888877753 33443332 2222 2222 356667
Q ss_pred hhcCCCCHHHHHHHHHHHHHHH
Q 003806 534 SMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 534 ~~t~GfSgaDL~~Lv~eAal~A 555 (794)
.+...-+.++|++++++|+..+
T Consensus 212 ~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 212 EYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hCCCCchHHHHHHHHHHHHHhC
Confidence 7776668899999999988765
No 183
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.03 E-value=1.7e-09 Score=119.03 Aligned_cols=197 Identities=22% Similarity=0.255 Sum_probs=120.4
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH--
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~-- 404 (794)
-+++++|.+...+.+.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36789999998888777665442 234569999999999999999997654 579999999876321
Q ss_pred ---hhccch-------HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-------
Q 003806 405 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 467 (794)
Q Consensus 405 ---~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~------- 467 (794)
+.|... ......|..|. ...|||||+|.|....+ ..+-.++..-. +.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~Q------------~~L~~~l~~~~-~~~~g~~~~ 137 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLVQ------------EKLLRVIEYGE-LERVGGSQP 137 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHHH------------HHHHHHHhcCc-EEeCCCCce
Confidence 222110 01122344433 35899999999864321 22223332211 11
Q ss_pred CCCcEEEEEEcCCC-------CCCCccccCCCccceEEEeecCCHHhHHH----HHHHHHhc----CCCCCcccc---ch
Q 003806 468 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELPLAKDI---DL 529 (794)
Q Consensus 468 ~~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l~~----~~l~l~~dv---dl 529 (794)
.+..+.||++|+.. ..+.+.|.. ||. .+.+..|...+|.+ ++.+++.. .+.+....+ .+
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 11357889988764 234455554 553 45677788777753 44444322 222111122 35
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 530 GDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 530 ~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
..|......-+.++|++++++|+..+
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 55667776667899999999988755
No 184
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.03 E-value=7.4e-10 Score=131.95 Aligned_cols=213 Identities=21% Similarity=0.287 Sum_probs=128.4
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH-
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE- 403 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~- 403 (794)
..+|++++|.+...+++.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999999988777766554432 233459999999999999999998764 57999999987632
Q ss_pred ----Hhhccc--h--HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCCC----C
Q 003806 404 ----LYVGMG--A--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS----N 469 (794)
Q Consensus 404 ----~~vG~~--~--~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~----~ 469 (794)
.+.|.. . ......|+.| ..++||||||+.+....+ ..|-.+|.+-. .... .
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~Q------------~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPELQ------------SALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHHH------------HHHHHHHhcCcEEeCCCCceEE
Confidence 222211 0 0001123333 346999999999864322 22223332210 0111 1
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccce-------EEEeecCCHHhHHH----HHHHHHhcC----C--CCCccccchhHH
Q 003806 470 SAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSKK----E--LPLAKDIDLGDI 532 (794)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~~----~--l~l~~dvdl~~L 532 (794)
..+.+|+||+.. + ..+...|+|.. .+.+..|...+|.+ ++..++... + +.+.++ .+..|
T Consensus 456 ~~~riI~~t~~~--l-~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~~~L 531 (638)
T PRK11388 456 VDVRVIATTTAD--L-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-ALARL 531 (638)
T ss_pred eeEEEEEeccCC--H-HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HHHHH
Confidence 257899999864 1 12222344421 57788888888852 344444321 1 122222 35667
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 533 ASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 533 A~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
..+...-+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 77776668899999999988664 33467777665444
No 185
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.02 E-value=2.3e-09 Score=128.86 Aligned_cols=199 Identities=23% Similarity=0.317 Sum_probs=123.5
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~ 404 (794)
..+|++++|.+.+.+.+.+.+..+.. ....|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35789999999988888777665432 33469999999999999999998754 679999999875331
Q ss_pred -----hhccc-------hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCC---
Q 003806 405 -----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD--- 467 (794)
Q Consensus 405 -----~vG~~-------~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~--- 467 (794)
..|.. .......|+.|. .++||||||+.+....+ ..+-.++..-. ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~~Q------------~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLELQ------------PKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHHHH------------HHHHHHHHhCCEEeCCCCC
Confidence 22211 011123344443 45999999999854322 12222332210 011
Q ss_pred -CCCcEEEEEEcCCCCCCCccccCCCccce-------EEEeecCCHHhHHH----HHHHHHhc----CCCC---Cccccc
Q 003806 468 -SNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KELP---LAKDID 528 (794)
Q Consensus 468 -~~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~----~~l~---l~~dvd 528 (794)
...++.+|++|+.. +. .+...|+|.. .+.+..|...+|.+ +++.++.+ .+.+ +.+ -.
T Consensus 507 ~~~~~~RiI~~t~~~--l~-~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~-~a 582 (686)
T PRK15429 507 IIQTDVRLIAATNRD--LK-KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA-ET 582 (686)
T ss_pred cccceEEEEEeCCCC--HH-HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH-HH
Confidence 12467899999865 11 1112223322 56788898888864 34444332 1222 222 23
Q ss_pred hhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 529 LGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 529 l~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
++.|....+.-+.++|++++++|+..+
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 566777776668899999999998765
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=2.3e-09 Score=126.62 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=120.7
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE-Eecc--
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSAS-- 399 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~-is~s-- 399 (794)
.+...+.+++||+|+++..++|+.++..... +..+.+.++|+||||||||++++.+|++++..++. .+..
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 3455678999999999988887776654322 23344569999999999999999999998765433 1110
Q ss_pred -hhH----------HH--hhccchHHHHHHHHHHHh----------cCCEEEEEcccchhhhccCCCccccchHHHHHHH
Q 003806 400 -EFV----------EL--YVGMGASRVRDLFARAKK----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (794)
Q Consensus 400 -e~~----------~~--~vG~~~~~vr~lF~~Ar~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (794)
... .. ........+++++..+.. ....||||||++.+... . .+.+
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----------~~~l 215 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----------TRAL 215 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----------HHHH
Confidence 000 00 001223445555555542 24569999999987532 1 1233
Q ss_pred HHHHH-hhcCCCCCCcEEEEEEcC-CCC--------------CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCC
Q 003806 457 NQLLT-EMDGFDSNSAVIVLGATN-RSD--------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE 520 (794)
Q Consensus 457 n~LL~-emdg~~~~~~VIVIaATN-~pd--------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~ 520 (794)
..+|. ... ....+.+|++++ .+. .|.++++...|. .+|.|.+.......+.|+..+....
T Consensus 216 q~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 216 HEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred HHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 44444 211 122233333332 121 134677743343 3789999999998888888877543
Q ss_pred CCCccc------cchhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 521 LPLAKD------IDLGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 521 l~l~~d------vdl~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
.....+ -.+..|+. .+.+|++.+++.-...+
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSS 328 (637)
T ss_pred hccccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHH
Confidence 222221 13455555 35568888887665543
No 187
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.02 E-value=3.7e-09 Score=124.80 Aligned_cols=192 Identities=19% Similarity=0.235 Sum_probs=124.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecchhHHHhhccchHHHHHHHHHHH---------hcCCEEEEEcccc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAK---------KEAPSIIFIDEID 434 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~se~~~~~vG~~~~~vr~lF~~Ar---------~~aP~ILfIDEID 434 (794)
.+|||.|+||||||++|++++..+. .||+.+......+...|.. .+...+.... .....+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 3799999999999999999999764 4798887543333333321 1111111000 1122499999999
Q ss_pred hhhhccCCCccccchHHHHHHHHHHHHhhcCCC-----------CCCcEEEEEEcCCCC---CCCccccCCCccceEEEe
Q 003806 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD---VLDPALRRPGRFDRVVMV 500 (794)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~VIVIaATN~pd---~LDpALlRpGRFdr~I~v 500 (794)
.+... +.+.|+..|+.-. ....+.||||+|..+ .|.++|+. ||+.++.+
T Consensus 95 rl~~~---------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 95 LLDDG---------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hCCHH---------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 88533 3345555554211 124688999999865 78899998 99988877
Q ss_pred e-cCCHHhHHHHHHHHHhcC-----------------------CCCCccccchhHHhhhc--CCCC-HHHHHHHHHHHHH
Q 003806 501 E-TPDKIGREAILKVHVSKK-----------------------ELPLAKDIDLGDIASMT--TGFT-GADLANLVNEAAL 553 (794)
Q Consensus 501 ~-~Pd~~eR~eILk~~l~~~-----------------------~l~l~~dvdl~~LA~~t--~GfS-gaDL~~Lv~eAal 553 (794)
. .|+.++|.+|++.++... .+.+.+++ ++.++..+ .|.+ .+....+++-|..
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~-~~~l~~~~~~~gv~s~Ra~i~~~r~ArA 236 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQ-VKELVLTAASLGISGHRADLFAVRAAKA 236 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHH-HHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 6 467788999988765211 11122111 22222211 2333 4556677888888
Q ss_pred HHHhhCCccccHHHHHHHHHHHhc
Q 003806 554 LAGRLNKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~rvi~ 577 (794)
.|..+++..|+.+|+..|+.-++.
T Consensus 237 ~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 237 HAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999988763
No 188
>PRK04132 replication factor C small subunit; Provisional
Probab=99.01 E-value=3.6e-09 Score=128.02 Aligned_cols=171 Identities=21% Similarity=0.222 Sum_probs=127.6
Q ss_pred EEEEc--CCCChHHHHHHHHHHhc-----CCcEEEEecchhHHHhhccchHHHHHHHHHHHhcC------CEEEEEcccc
Q 003806 368 VLLVG--LPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEA------PSIIFIDEID 434 (794)
Q Consensus 368 VLL~G--PPGTGKT~LAkALA~el-----gvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~a------P~ILfIDEID 434 (794)
-+..| |++.|||++|+++|+++ +.+++.+++++.. +...+++..+.+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 55668 99999999999999997 5689999998752 2346677666544322 3699999999
Q ss_pred hhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHH
Q 003806 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (794)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~ 514 (794)
.|... ..+.|+..|+.. ...+.+|.+||.+..+.+++++ | ...+.|++|+.++..+.|+.
T Consensus 641 ~Lt~~---------------AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--R-C~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 641 ALTQD---------------AQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--R-CAIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred cCCHH---------------HHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--h-ceEEeCCCCCHHHHHHHHHH
Confidence 98532 346788888743 3567899999999999999987 6 45899999999999999998
Q ss_pred HHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHH
Q 003806 515 HVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (794)
Q Consensus 515 ~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (794)
.+.+.++.++++ .+..++..+.| +.+..-++++.++.. ...|+.+++...
T Consensus 701 I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 701 IAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 888776665544 67888888887 666666776655432 134666655543
No 189
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.7e-10 Score=126.91 Aligned_cols=212 Identities=23% Similarity=0.287 Sum_probs=122.9
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----------------
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----------------- 390 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg----------------- 390 (794)
...|.||.|++.+|+.|..... ..+++|++||||||||+||+.+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 4689999999999999876543 345799999999999999999876331
Q ss_pred ------------CcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHH
Q 003806 391 ------------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (794)
Q Consensus 391 ------------vpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (794)
.||..-.-+.-....+|.+...--.-...| .-.||||||+-.+- .++|+.
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA---H~GVLFLDElpef~---------------~~iLe~ 302 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA---HNGVLFLDELPEFK---------------RSILEA 302 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee---cCCEEEeeccchhh---------------HHHHHH
Confidence 122211111111112222200000001111 22499999986542 356777
Q ss_pred HHHhhcCCC-----------CCCcEEEEEEcCCC-----------------------CCCCccccCCCccceEEEeecCC
Q 003806 459 LLTEMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPD 504 (794)
Q Consensus 459 LL~emdg~~-----------~~~~VIVIaATN~p-----------------------d~LDpALlRpGRFdr~I~v~~Pd 504 (794)
|-+=|+.-. -..++.+|+|+|.. ..|...+++ |||..+.++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 766665211 12357788888852 234455566 999999998876
Q ss_pred HHhHH--------------HHHHHH----HhcCCCCCccc----------------cchhHHhhhcCCCCHHHHHHHHHH
Q 003806 505 KIGRE--------------AILKVH----VSKKELPLAKD----------------IDLGDIASMTTGFTGADLANLVNE 550 (794)
Q Consensus 505 ~~eR~--------------eILk~~----l~~~~l~l~~d----------------vdl~~LA~~t~GfSgaDL~~Lv~e 550 (794)
..++. .+.+.+ .+......... .++...+-..-++|.+....+++-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 43331 111111 00010000111 112222344456777888888888
Q ss_pred HHHHHHhhCCccccHHHHHHHHH
Q 003806 551 AALLAGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~ 573 (794)
|..+|-.++...|...|+.+|+.
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHh
Confidence 88888778888888888888874
No 190
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8.4e-10 Score=118.14 Aligned_cols=125 Identities=35% Similarity=0.508 Sum_probs=85.5
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCC-------CC-CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-H
Q 003806 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGA-------RP-PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-L 404 (794)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~-------~~-pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-~ 404 (794)
|+|++.+|+.|.=.|. .+ |.++.. .. -.++||.||+|||||+||+.+|+.+++||...++..+.+ .
T Consensus 63 VIGQe~AKKvLsVAVY--NH---YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVY--NH---YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeeh--hH---HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 8899999987754332 22 333321 11 246999999999999999999999999999999998887 5
Q ss_pred hhccchHHH-HHHHHHHH----hcCCEEEEEcccchhhhccCCCcc--ccchHHHHHHHHHHHHhhcCC
Q 003806 405 YVGMGASRV-RDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFR--IVSNDEREQTLNQLLTEMDGF 466 (794)
Q Consensus 405 ~vG~~~~~v-r~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~--~~~~~e~~~~Ln~LL~emdg~ 466 (794)
|+|+...++ ..++..|. +....||+|||||.+.++..+... ..+. +.+-..||..++|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG---EGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG---EGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc---hHHHHHHHHHHcCc
Confidence 888876555 34444332 223459999999999977643211 1122 23445677777753
No 191
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.00 E-value=4e-09 Score=114.04 Aligned_cols=145 Identities=23% Similarity=0.330 Sum_probs=97.8
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------------------
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--------------------- 390 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg--------------------- 390 (794)
++++|.+++...+...+..- .+.|..+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 36777787777666644321 24555799999999999999999999886
Q ss_pred ---CcEEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhh
Q 003806 391 ---VPFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (794)
Q Consensus 391 ---vpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (794)
-.++.++.++-... ......++++-+.... ....||+|||+|.+.. ...|.++..|
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~---------------~A~nallk~l 133 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE---------------DAANALLKTL 133 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHh
Confidence 35566666544221 0123445554444332 2346999999999864 3447888888
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhH
Q 003806 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508 (794)
Q Consensus 464 dg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR 508 (794)
+. +..+..+|.+||.++.+-+.+++ | ...+.|.+|+....
T Consensus 134 Ee--p~~~~~~il~~n~~~~il~tI~S--R-c~~i~f~~~~~~~~ 173 (325)
T COG0470 134 EE--PPKNTRFILITNDPSKILPTIRS--R-CQRIRFKPPSRLEA 173 (325)
T ss_pred cc--CCCCeEEEEEcCChhhccchhhh--c-ceeeecCCchHHHH
Confidence 73 34567888899999999888887 4 34677776544433
No 192
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.8e-09 Score=113.91 Aligned_cols=84 Identities=30% Similarity=0.427 Sum_probs=62.2
Q ss_pred CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--------CCCcEEEEEEc----CCCCCCCccccCCC
Q 003806 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPG 492 (794)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaAT----N~pd~LDpALlRpG 492 (794)
-.||||||||.++.+.+.+ +.+-.++.+-..||-.++|.. ..+.+++||+. ..|+.|-|.|. |
T Consensus 251 ~GIvFIDEIDKIa~~~~~g---~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--G 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSG---GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--G 325 (444)
T ss_pred cCeEEEehhhHHHhcCCCC---CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--C
Confidence 4599999999998765421 223344555667777777542 24578999887 46888888886 6
Q ss_pred ccceEEEeecCCHHhHHHHHH
Q 003806 493 RFDRVVMVETPDKIGREAILK 513 (794)
Q Consensus 493 RFdr~I~v~~Pd~~eR~eILk 513 (794)
||.-.+++...+.++-..||.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred CCceEEEcccCCHHHHHHHHc
Confidence 999999999999988887764
No 193
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.95 E-value=2e-09 Score=122.22 Aligned_cols=209 Identities=24% Similarity=0.361 Sum_probs=130.6
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~ 404 (794)
...+.+++|...+.+++.+.+..+.. ..-.||++|++||||.++|++|.... +-||+.++|..+...
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAP----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 34678899999999999998876544 33469999999999999999997755 569999999866432
Q ss_pred -----hhccch-------HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh--hcCCCC--
Q 003806 405 -----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE--MDGFDS-- 468 (794)
Q Consensus 405 -----~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e--mdg~~~-- 468 (794)
..|... .+-...|+.|... .||||||..+.-.-| .-|-..|++ +....+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~~Q------------~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLELQ------------VKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHHHH------------HHHHHHHHcCeeEecCCCc
Confidence 223211 1112356666544 999999988753322 112222222 111211
Q ss_pred --CCcEEEEEEcCCCCCCCccccCCCccc-------eEEEeecCCHHhHHH----HHHHHHh----cCCCCCccccc---
Q 003806 469 --NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVS----KKELPLAKDID--- 528 (794)
Q Consensus 469 --~~~VIVIaATN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~e----ILk~~l~----~~~l~l~~dvd--- 528 (794)
+-.|.||+|||+. |... ...|+|- .++.+..|...+|.+ ++.++++ ..+.+ ...++
T Consensus 272 ~i~vdvRiIaaT~~d--L~~~-v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-~~~~s~~a 347 (464)
T COG2204 272 PIKVDVRIIAATNRD--LEEE-VAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-PKGFSPEA 347 (464)
T ss_pred ccceeeEEEeecCcC--HHHH-HHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC-CCCCCHHH
Confidence 2368999999975 2222 2234443 277888999988874 3333333 22221 22333
Q ss_pred hhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 003806 529 LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (794)
Q Consensus 529 l~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (794)
+..+..+.+.-+.++|+|++.+++..+. ...|+.+++
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~~---~~~i~~~~l 384 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILSE---GPEIEVEDL 384 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcCC---ccccchhhc
Confidence 3444445544466999999999987763 344554443
No 194
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.92 E-value=2.2e-09 Score=107.80 Aligned_cols=111 Identities=32% Similarity=0.358 Sum_probs=73.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC----cEEEEecchhHHHhhccchHHHHHHHHHH----HhcCCEEEEEcccchhh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSASEFVELYVGMGASRVRDLFARA----KKEAPSIIFIDEIDAVA 437 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgv----pfi~is~se~~~~~vG~~~~~vr~lF~~A----r~~aP~ILfIDEIDaL~ 437 (794)
..+||+||+|||||.+|+++|..+.. +++.++++++.+. +.....+..++..+ ......||||||||+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 45899999999999999999999996 9999999998761 11112222222211 01111299999999998
Q ss_pred hccCCCccccchHHHHHHHHHHHHhhcCCC---------CCCcEEEEEEcCCCC
Q 003806 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGATNRSD 482 (794)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~~~~VIVIaATN~pd 482 (794)
+... .+.+-....+.+.||+.+++-. +-.++++|+|+|.-.
T Consensus 82 ~~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 7522 2344445567777887776321 124789999999653
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.3e-08 Score=112.05 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=105.1
Q ss_pred ccccccC-ChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc----------------
Q 003806 330 TFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------------- 392 (794)
Q Consensus 330 tf~DV~G-~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp---------------- 392 (794)
.|++|+| ++.+++.|...+. ..+.|..+||+||+|+|||++|+++|+.+.++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888999 8888888877664 23567789999999999999999999876332
Q ss_pred --------EEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHH
Q 003806 393 --------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (794)
Q Consensus 393 --------fi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (794)
+..+... . ...+...++++.+.+.. ....|++|||+|.+.. ...|.||
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLL 131 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------SAANSLL 131 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---------------HHHHHHH
Confidence 1111110 0 00123466666655432 2345999999998842 3458899
Q ss_pred HhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHH
Q 003806 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (794)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk 513 (794)
..|+. +...+++|.+|+.+..|.|++++ | ...+++.+|+.++..++++
T Consensus 132 K~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--R-c~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 132 KFLEE--PSGGTTAILLTENKHQILPTILS--R-CQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred HHhcC--CCCCceEEEEeCChHhCcHHHHh--h-ceeeeCCCCCHHHHHHHHH
Confidence 99984 44567777788888899999988 5 3488999999888766665
No 196
>PRK08116 hypothetical protein; Validated
Probab=98.92 E-value=1.2e-08 Score=109.43 Aligned_cols=124 Identities=20% Similarity=0.265 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhc----cchHHHHHHHHHHHhcCCEEEEEcccchh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVG----MGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG----~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 436 (794)
.+.|++|+||||||||+||.++|+++ +.+++.++.+++...+.. .......++++... ...+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 35689999999999999999999975 789999999887764421 11112223333332 2349999999642
Q ss_pred hhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC-CC----CCccccCCCcc---ceEEEeecCCH
Q 003806 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DV----LDPALRRPGRF---DRVVMVETPDK 505 (794)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p-d~----LDpALlRpGRF---dr~I~v~~Pd~ 505 (794)
. ..+.....+..+++.. .. .+..+|.|||.+ +. ++..+.+ |+ ...|.+.-||.
T Consensus 191 ~----------~t~~~~~~l~~iin~r---~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 R----------DTEWAREKVYNIIDSR---YR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C----------CCHHHHHHHHHHHHHH---HH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 1222233333444432 11 233566788865 22 4555655 53 33456666664
No 197
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.90 E-value=4.6e-09 Score=118.34 Aligned_cols=200 Identities=27% Similarity=0.373 Sum_probs=127.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
+...+.+++|...+..++.+.|+.... ....|||.|.+||||..+||+|-... +.||+.++|+.+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAK----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhc----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 467889999999999999888876433 34579999999999999999998765 68999999987765
Q ss_pred H-----hhccchHHH-------HHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh--hcCCCCC
Q 003806 404 L-----YVGMGASRV-------RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE--MDGFDSN 469 (794)
Q Consensus 404 ~-----~vG~~~~~v-------r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e--mdg~~~~ 469 (794)
. ..|.-...+ +.-|+.|.. +-||+|||..|.-.-+ .-+-..|++ ++...++
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL~lQ------------aKLLRvLQegEieRvG~~ 352 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPLALQ------------AKLLRVLQEGEIERVGGD 352 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCHHHH------------HHHHHHHhhcceeecCCC
Confidence 2 222211111 122444433 3899999988754332 122233332 3322222
Q ss_pred ----CcEEEEEEcCCCCCCCccccCCCccc-------eEEEeecCCHHhHHH----HHHHHHhc----CCC---CCcccc
Q 003806 470 ----SAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDI 527 (794)
Q Consensus 470 ----~~VIVIaATN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~e----ILk~~l~~----~~l---~l~~dv 527 (794)
-.|.||||||+. |-.++ +.|+|- .++.+..|...+|.+ +.++++.+ .+. .++.+
T Consensus 353 r~ikVDVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~- 428 (550)
T COG3604 353 RTIKVDVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE- 428 (550)
T ss_pred ceeEEEEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH-
Confidence 358999999974 33333 235552 256667788888753 22233322 121 22222
Q ss_pred chhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 528 DLGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 528 dl~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
.++.+......-+.++|+|+|++|++.|
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 2555666665557799999999999988
No 198
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.89 E-value=2.4e-08 Score=106.18 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=89.2
Q ss_pred CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC------------CCCCCccccCCC
Q 003806 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR------------SDVLDPALRRPG 492 (794)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~------------pd~LDpALlRpG 492 (794)
|.||||||++.|- -+.-..+|.-|.. .+. + ++|.+||+ |.-+|-.|+.
T Consensus 289 pGVLFIDEvHMLD------------IEcFsFlNrAlE~--d~~---P-iiimaTNrgit~iRGTn~~SphGiP~D~lD-- 348 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD------------IECFSFLNRALEN--DMA---P-IIIMATNRGITRIRGTNYRSPHGIPIDLLD-- 348 (454)
T ss_pred cceEEEeeehhhh------------hHHHHHHHHHhhh--ccC---c-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--
Confidence 6778888877652 2233344444432 122 2 55566665 4566666664
Q ss_pred ccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 493 RFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 493 RFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
|. ..|...+++.++.++||+..+....+.+.++ .++.|......-|-+-.-+|+..|.+.+.++....++.+|+..+.
T Consensus 349 R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~-A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y 426 (454)
T KOG2680|consen 349 RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPD-ALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVY 426 (454)
T ss_pred hh-heeecccCcHHHHHHHHHhhhhhhccccCHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHH
Confidence 32 2556677889999999999998877766554 356666665566778888999999999999999999999999988
Q ss_pred HHH
Q 003806 573 ERS 575 (794)
Q Consensus 573 ~rv 575 (794)
.--
T Consensus 427 ~LF 429 (454)
T KOG2680|consen 427 RLF 429 (454)
T ss_pred HHH
Confidence 543
No 199
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=2e-08 Score=110.67 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCc------------------------EEEEecchhHHHhhccchHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLF 417 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvp------------------------fi~is~se~~~~~vG~~~~~vr~lF 417 (794)
.+.|..+||+||+|+|||++|+++|+.+.+. ++.+...+- -..-+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHH
Confidence 5678889999999999999999999987431 111111000 0012346777777
Q ss_pred HHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCc
Q 003806 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (794)
Q Consensus 418 ~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 493 (794)
+.+.. ....|++|||+|.+.. ...|.||+.++. +..++++|.+|+.++.|.|.+++ |
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--R 156 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--R 156 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--h
Confidence 66643 3355999999999852 355899999984 44678888999999999999998 6
Q ss_pred cceEEEeecCCHHhHHHHHHHHH
Q 003806 494 FDRVVMVETPDKIGREAILKVHV 516 (794)
Q Consensus 494 Fdr~I~v~~Pd~~eR~eILk~~l 516 (794)
.. .+.+.+|+.++..+.|....
T Consensus 157 c~-~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 157 CQ-QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred ce-eeeCCCcCHHHHHHHHHHhc
Confidence 43 68999999988887776543
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.4e-08 Score=114.44 Aligned_cols=153 Identities=24% Similarity=0.405 Sum_probs=106.1
Q ss_pred HHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE-ecchhHHHhhccchHHHHHHHHHHHhcCC
Q 003806 347 IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGASRVRDLFARAKKEAP 425 (794)
Q Consensus 347 iV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i-s~se~~~~~vG~~~~~vr~lF~~Ar~~aP 425 (794)
++...+++++ .+-..+||.||||+|||.||-.+|...+.||+.+ |..+++.+.....-..++..|+.|.+..-
T Consensus 526 lv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 4444555544 3456799999999999999999999999999875 44444433223334578899999999888
Q ss_pred EEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCC-cEEEEEEcCCCCCCC-ccccCCCccceEEEeecC
Q 003806 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRSDVLD-PALRRPGRFDRVVMVETP 503 (794)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~-~VIVIaATN~pd~LD-pALlRpGRFdr~I~v~~P 503 (794)
+||++|+|+.|..- ...+.-..+-++..|+..+....+.. +.+|++||.+.+.|. -.++. .|+..+.||..
T Consensus 600 siivvDdiErLiD~-----vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl 672 (744)
T KOG0741|consen 600 SIIVVDDIERLLDY-----VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNL 672 (744)
T ss_pred eEEEEcchhhhhcc-----cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCcc
Confidence 99999999998632 12344455667777777777655543 577888887765442 22333 68888888765
Q ss_pred CH-HhHHHHH
Q 003806 504 DK-IGREAIL 512 (794)
Q Consensus 504 d~-~eR~eIL 512 (794)
.. ++..+++
T Consensus 673 ~~~~~~~~vl 682 (744)
T KOG0741|consen 673 TTGEQLLEVL 682 (744)
T ss_pred CchHHHHHHH
Confidence 54 4444443
No 201
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.84 E-value=2.6e-08 Score=120.39 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=89.3
Q ss_pred cccCChHhHHHHHHHHHHhcChhH-----------HhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCcEE
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDK-----------YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI 394 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~-----------~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-------gvpfi 394 (794)
.|.|.+.+|+.|. +..+....+ |.....+...+|||+|+||||||.+|++++... |.++.
T Consensus 451 ~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 5788888887662 222221111 001123445579999999999999999998754 24555
Q ss_pred EEecchhHHHhhc--cchHHH-HHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC-----
Q 003806 395 SCSASEFVELYVG--MGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF----- 466 (794)
Q Consensus 395 ~is~se~~~~~vG--~~~~~v-r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~----- 466 (794)
.+.+..+.. +.+ .+.-.+ ...+..| .-++++|||+|.+.... . ..|+..|+.-
T Consensus 529 ~vgLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms~~~------------Q---~aLlEaMEqqtIsI~ 589 (915)
T PTZ00111 529 SVGLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCHNES------------R---LSLYEVMEQQTVTIA 589 (915)
T ss_pred cccccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhCCHHH------------H---HHHHHHHhCCEEEEe
Confidence 544433321 000 010000 0011112 23499999999985321 1 2333444321
Q ss_pred ------CCCCcEEEEEEcCCC-------------CCCCccccCCCccceEEEe-ecCCHHhHHHHHH
Q 003806 467 ------DSNSAVIVLGATNRS-------------DVLDPALRRPGRFDRVVMV-ETPDKIGREAILK 513 (794)
Q Consensus 467 ------~~~~~VIVIaATN~p-------------d~LDpALlRpGRFdr~I~v-~~Pd~~eR~eILk 513 (794)
.-+..+.||||+|+. -.|+++|++ |||..+.+ +.|+.+.-..|..
T Consensus 590 KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 590 KAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred cCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHH
Confidence 123578999999974 146799998 99977544 6677655444433
No 202
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.80 E-value=1.4e-08 Score=115.64 Aligned_cols=207 Identities=18% Similarity=0.236 Sum_probs=121.6
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh-
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~- 405 (794)
.+.+++|.....+.+.+.+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888877776666554322 233569999999999999999997764 5799999998764321
Q ss_pred ----hccch-------HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCC----C
Q 003806 406 ----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD----S 468 (794)
Q Consensus 406 ----vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~----~ 468 (794)
.|... ......|..| ...+||||||+.|....+ ..+-.++..-. ... .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q------------~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNLQ------------AKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHHH------------HHHHHHHhhCeEEeCCCCcee
Confidence 11100 0011122222 345999999999864322 22223333210 001 1
Q ss_pred CCcEEEEEEcCCC-------CCCCccccCCCccceEEEeecCCHHhHHH----HHHHHHhc----CCC---CCccccchh
Q 003806 469 NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLG 530 (794)
Q Consensus 469 ~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l~~----~~l---~l~~dvdl~ 530 (794)
...+.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ ++++++.. .+. .+.+ -.+.
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~ 347 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTD-DALR 347 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCH-HHHH
Confidence 1357889998765 223333332 332 46778888888864 34444332 111 1222 2356
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 003806 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (794)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (794)
.|..+...-+.++|++++++|+..+. ...|+.+++
T Consensus 348 ~L~~~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 348 ALEAHAWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 66777766688999999999987652 345555543
No 203
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.76 E-value=2.6e-08 Score=102.96 Aligned_cols=185 Identities=23% Similarity=0.314 Sum_probs=106.9
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-CC----cEEEEe
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EV----PFISCS 397 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-gv----pfi~is 397 (794)
.+...++.+.|++|.++..+.|.-+... ...| ++++.||||||||+-+.++|.++ |- -+..++
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~-----------gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKE-----------GNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHc-----------CCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 3556788899999999999988766542 2333 59999999999999999999986 31 245555
Q ss_pred cchhHHHhhccchHHHH---HHHHHHHhcC-C---EEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCC
Q 003806 398 ASEFVELYVGMGASRVR---DLFARAKKEA-P---SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (794)
Q Consensus 398 ~se~~~~~vG~~~~~vr---~lF~~Ar~~a-P---~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~ 470 (794)
+|+=. +-..+| +.|.+-+-.- | .||++||.|.+.... . |.+.. .|+-+. +
T Consensus 86 ASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA--------Q----QAlRR---tMEiyS--~ 142 (333)
T KOG0991|consen 86 ASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA--------Q----QALRR---TMEIYS--N 142 (333)
T ss_pred Ccccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH--------H----HHHHH---HHHHHc--c
Confidence 55422 222333 4566555322 2 499999999985321 1 22222 222222 2
Q ss_pred cEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHH
Q 003806 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (794)
Q Consensus 471 ~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~e 550 (794)
...+..++|..+.+-+.+.+ |.. .+.+...+..+...-|.......+++..++ -++.+.-... +|+++.+|.
T Consensus 143 ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~----GDMRQalNn 214 (333)
T KOG0991|consen 143 TTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQ----GDMRQALNN 214 (333)
T ss_pred cchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcc-hHHHhhhhcc----chHHHHHHH
Confidence 34577788988877776765 321 333444444444333333444444443332 2444433333 355555554
No 204
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.75 E-value=3.6e-08 Score=98.71 Aligned_cols=134 Identities=29% Similarity=0.440 Sum_probs=79.7
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH-----Hh
Q 003806 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-----LY 405 (794)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~-----~~ 405 (794)
++|.+...+++.+.+..+. ..+..|||+|++||||+++|+++.+.. +.||+.++|+.+.. ..
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5677777777766655432 344679999999999999999998865 57999999987643 22
Q ss_pred hccch-------HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCCC----CCcE
Q 003806 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS----NSAV 472 (794)
Q Consensus 406 vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~----~~~V 472 (794)
.|... ..-..+|++|... +||||||+.|...- ...|-+++..-. .... ...+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~------------Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPEL------------QAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHH------------HHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHHH------------HHHHHHHHhhchhccccccccccccc
Confidence 33211 1123577777665 99999999986432 223334444311 1111 2368
Q ss_pred EEEEEcCCCCCCCccccCCCccc
Q 003806 473 IVLGATNRSDVLDPALRRPGRFD 495 (794)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFd 495 (794)
.||++|+.+ |.. +...|+|.
T Consensus 136 RiI~st~~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 136 RIIASTSKD--LEE-LVEQGRFR 155 (168)
T ss_dssp EEEEEESS---HHH-HHHTTSS-
T ss_pred eEEeecCcC--HHH-HHHcCCCh
Confidence 999999864 332 33345553
No 205
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.74 E-value=4.1e-08 Score=112.55 Aligned_cols=210 Identities=20% Similarity=0.257 Sum_probs=126.1
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH--
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~-- 404 (794)
.+.+++|.....+.+.+.+..+. .....+|+.|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 35689998887776666554322 234469999999999999999998865 579999999876332
Q ss_pred ---hhccchH------H-HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCC----C
Q 003806 405 ---YVGMGAS------R-VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD----S 468 (794)
Q Consensus 405 ---~vG~~~~------~-vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~----~ 468 (794)
..|.... . ....|+.+ ....|||||+|.+....+ ..+-.++..-. ... .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~q------------~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDVQ------------TRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHHH------------HHHHHHHhcCcEEeCCCCCeE
Confidence 1121100 0 01112222 245899999999864322 22223333211 001 1
Q ss_pred CCcEEEEEEcCCC-------CCCCccccCCCccceEEEeecCCHHhHHH----HHHHHHhc----CCCC---Cccccchh
Q 003806 469 NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELP---LAKDIDLG 530 (794)
Q Consensus 469 ~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l~~----~~l~---l~~dvdl~ 530 (794)
...+.+|+||+.. ..+.+.|.. ||. .+.+..|...+|.+ ++.+++.. .+.+ +.+ -.+.
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~ 346 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHP-ETEA 346 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCH-HHHH
Confidence 2357889998764 123344443 443 46777777777753 44555432 1211 222 2366
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHH
Q 003806 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (794)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (794)
.|..+...-+.++|+++++.|+..+. ...|+.+|+...
T Consensus 347 ~L~~~~wpgNv~eL~~~i~~~~~~~~---~~~i~~~~l~~~ 384 (469)
T PRK10923 347 ALTRLAWPGNVRQLENTCRWLTVMAA---GQEVLIQDLPGE 384 (469)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHCcHh
Confidence 67777776688999999999987763 456777776433
No 206
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.73 E-value=5.9e-08 Score=110.62 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=121.5
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh-
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~- 405 (794)
.+.+++|.......+.+.+..+. .....+|++|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 45568887776665555443322 223469999999999999999997654 5799999998764321
Q ss_pred ----hccchHH-------HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCCC----
Q 003806 406 ----VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS---- 468 (794)
Q Consensus 406 ----vG~~~~~-------vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~---- 468 (794)
.|..... ....|..| ...+|||||||.+....+ ..+-.++..-. ....
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~~q------------~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLVLQ------------AKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHHHH------------HHHHHHHhcCcEEeCCCCcee
Confidence 1211000 01122222 235999999999864321 12222332210 0011
Q ss_pred CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeecCCHHhHHH----HHHHHHhcC----CC---CCccccchh
Q 003806 469 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSKK----EL---PLAKDIDLG 530 (794)
Q Consensus 469 ~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~~----~l---~l~~dvdl~ 530 (794)
..++.+|++||.. + ..+.+.|+|.. .+.+..|...+|.+ ++..++.+. +. .+.+ -.++
T Consensus 276 ~~~~rii~~t~~~--l-~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~ 351 (457)
T PRK11361 276 KVDIRIIAATNRD--L-QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDP-MAMS 351 (457)
T ss_pred eeceEEEEeCCCC--H-HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCH-HHHH
Confidence 2357899999864 1 12333344433 56788888888753 333333321 11 1222 1355
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
.+..+...-+.++|++++++|+..+ ....|+.+|+..
T Consensus 352 ~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~ 388 (457)
T PRK11361 352 LLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPP 388 (457)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChH
Confidence 6677776668899999999988765 344677666643
No 207
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.72 E-value=1.1e-07 Score=112.78 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=63.5
Q ss_pred cEEEEEEcCCC--CCCCccccCCCccc---eEEEeec--CC-HHhHHHHHHHHHhcCCCC-Cccccchh---HHhh---h
Q 003806 471 AVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--PD-KIGREAILKVHVSKKELP-LAKDIDLG---DIAS---M 535 (794)
Q Consensus 471 ~VIVIaATN~p--d~LDpALlRpGRFd---r~I~v~~--Pd-~~eR~eILk~~l~~~~l~-l~~dvdl~---~LA~---~ 535 (794)
.+.||+++|+. ..+||+|.. ||. ..+.++. ++ .+.+..+++...+..... ....++-+ .+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57899999875 567899987 775 3444432 22 345555555433221110 01123322 2221 1
Q ss_pred cCC------CCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 536 TTG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 536 t~G------fSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
..| ..-++|.+++++|...|..+++..|+.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 346899999999999999999999999999999865
No 208
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.4e-08 Score=108.63 Aligned_cols=74 Identities=38% Similarity=0.692 Sum_probs=60.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-HhhccchH-HHHHHHHHHH----hcCCEEEEEcccchhhhcc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGAS-RVRDLFARAK----KEAPSIIFIDEIDAVAKSR 440 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-~~vG~~~~-~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r 440 (794)
+|||.||+|+|||+||+.+|.-+++||..++|..+.. .|+|+... .+..++..|. +....||||||+|.+....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 6999999999999999999999999999999999876 68887644 4556666553 2345699999999998543
No 209
>PRK12377 putative replication protein; Provisional
Probab=98.71 E-value=9.4e-08 Score=101.47 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhccc--hHHHHHHHHHHHhcCCEEEEEcccchhhhc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~~--~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~ 439 (794)
..+++|+||||||||+||.|+|.++ |..++.++..++.......- .....++++.. ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 4689999999999999999999876 67888888888876432110 01112333333 345699999997642
Q ss_pred cCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
.+......+.+++..-. ....-+|.|||..
T Consensus 177 --------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 177 --------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred --------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 12233455666665532 1222356678864
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=9.8e-08 Score=105.66 Aligned_cols=134 Identities=21% Similarity=0.261 Sum_probs=95.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEE---EEecchhHH--------------Hh-------------------
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SCSASEFVE--------------LY------------------- 405 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi---~is~se~~~--------------~~------------------- 405 (794)
.+.|.++||+||+|+||+++|+++|+.+.+.-- .-.|..... ..
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 478899999999999999999999987644210 001111000 00
Q ss_pred ------------hccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCC
Q 003806 406 ------------VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (794)
Q Consensus 406 ------------vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~ 469 (794)
..-+...+|++.+.+.. ....|++||++|.+.. ..-|.||+.++ ++.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp 160 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLE--EPP 160 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhc--CCC
Confidence 00123566776665432 2235999999999852 45589999998 566
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHH
Q 003806 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (794)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~ 515 (794)
.++++|.+|+.++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 788999999999999999998 64 58999999998888777653
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.70 E-value=1.4e-07 Score=99.87 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=80.3
Q ss_pred CCcccccccCC-hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH
Q 003806 327 DTITFADVAGV-DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (794)
Q Consensus 327 ~~vtf~DV~G~-devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~ 402 (794)
...+|++..-. +..+..+..+..+..+ +. ....+++|+||||||||+|+.++|.++ +.+++.++.+++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~---~~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEE---FD----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHh---hc----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 45678777533 3333334444433322 11 123489999999999999999999987 7889999998887
Q ss_pred HHhhcc---chHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 403 ELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 403 ~~~vG~---~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
..+... ......++++... .+++|+|||++... ..+.....+.+++..-. . ..-.+|.+||
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~----------~s~~~~~~l~~Ii~~Ry--~--~~~~tiitSN 203 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT----------ESRYEKVIINQIVDRRS--S--SKRPTGMLTN 203 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC----------CCHHHHHHHHHHHHHHH--h--CCCCEEEeCC
Confidence 644321 1112233444433 46699999998753 22334456666666522 1 1234566888
Q ss_pred CC
Q 003806 480 RS 481 (794)
Q Consensus 480 ~p 481 (794)
..
T Consensus 204 l~ 205 (244)
T PRK07952 204 SN 205 (244)
T ss_pred CC
Confidence 64
No 212
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.67 E-value=8.8e-08 Score=95.21 Aligned_cols=133 Identities=24% Similarity=0.362 Sum_probs=86.9
Q ss_pred CChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------------------c
Q 003806 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------------------P 392 (794)
Q Consensus 336 G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-----------------------p 392 (794)
|++++++.|.+.+.. .+.|..+||+||+|+||+++|+++|..+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 778888888776642 356778999999999999999999987632 1
Q ss_pred EEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC
Q 003806 393 FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (794)
Q Consensus 393 fi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~ 468 (794)
++.++..+.. ..-..+.++++...+.. ....|++|||+|.+.. ...|.||..|+. +
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEe--p 129 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEE--P 129 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHS--T
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcC--C
Confidence 2222221110 01234667766665542 3456999999999853 455899999984 4
Q ss_pred CCcEEEEEEcCCCCCCCccccCCCccceEEEeec
Q 003806 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (794)
Q Consensus 469 ~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (794)
..++++|.+|+.++.|.|.+++ |. ..+.+++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 4678889999999999999998 53 3555554
No 213
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.66 E-value=3.6e-07 Score=106.58 Aligned_cols=194 Identities=19% Similarity=0.304 Sum_probs=125.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEecchhHH---Hhh-------cc------chHHHHHHHHHH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE---LYV-------GM------GASRVRDLFARA 420 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el----------gvpfi~is~se~~~---~~v-------G~------~~~~vr~lF~~A 420 (794)
.+.+.|-||||||.+++.+-.++ ..+|+.+++-.+.+ .|. |. +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68899999999999999998755 35678888765543 221 21 112223233311
Q ss_pred H-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccC---CCccc-
Q 003806 421 K-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR---PGRFD- 495 (794)
Q Consensus 421 r-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlR---pGRFd- 495 (794)
+ ...||||+|||+|.|....+ .++..++..-. ..+.+++||+..|..+. +..++- ..|++
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt--~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~ 568 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT--LKNSKLVVIAIANTMDL-PERLLMNRVSSRLGL 568 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc--CCCCceEEEEecccccC-HHHHhccchhhhccc
Confidence 1 34578999999999986543 34555555432 34578888888887643 222221 12443
Q ss_pred eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCH--HHHHHHHHHHHHHHHhhCC-------ccccHH
Q 003806 496 RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG--ADLANLVNEAALLAGRLNK-------VVVEKI 566 (794)
Q Consensus 496 r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSg--aDL~~Lv~eAal~A~r~~~-------~~It~~ 566 (794)
+.+.|.+++..+.++|+...+.... .+..+ ..+-+|+.-...|| +-...+|++|+..|..+.. ..|++.
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~-aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~ 646 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLD-AFENK-AIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGIL 646 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchh-hcchh-HHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehH
Confidence 4788999999999999999886531 12111 23334444444444 5666889999998876654 567888
Q ss_pred HHHHHHHHHhc
Q 003806 567 DFIHAVERSIA 577 (794)
Q Consensus 567 d~~~Al~rvi~ 577 (794)
|+.+|+.....
T Consensus 647 ~v~~Ai~em~~ 657 (767)
T KOG1514|consen 647 HVMEAINEMLA 657 (767)
T ss_pred HHHHHHHHHhh
Confidence 88888876554
No 214
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=8.7e-07 Score=99.56 Aligned_cols=205 Identities=19% Similarity=0.228 Sum_probs=129.6
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecchhHH----
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVE---- 403 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se~~~---- 403 (794)
.+.|.+...+.+++++.. + +....+..+.+.|-||||||.+...+-... ....++++|..+.+
T Consensus 151 ~l~gRe~e~~~v~~F~~~---h-----le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSL---H-----LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHh---h-----hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 477888877777765532 1 234567789999999999999999776543 22347888775322
Q ss_pred ------Hh----hccch-HHHHHHHHHH-Hhc-CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCC
Q 003806 404 ------LY----VGMGA-SRVRDLFARA-KKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (794)
Q Consensus 404 ------~~----vG~~~-~~vr~lF~~A-r~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~ 470 (794)
.+ .+.+. ......|..- ... .+-++++||+|.|....+. ++..+.. +.. -.+.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lFe-wp~-lp~s 288 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLFE-WPK-LPNS 288 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeeehh-ccc-CCcc
Confidence 11 11111 1222333332 222 3679999999999855432 2222222 222 2357
Q ss_pred cEEEEEEcCCCCCCCccccC----CCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCH--HHH
Q 003806 471 AVIVLGATNRSDVLDPALRR----PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG--ADL 544 (794)
Q Consensus 471 ~VIVIaATN~pd~LDpALlR----pGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSg--aDL 544 (794)
.+++|+.+|..|.-|..|-| .+--...+.|++++.++..+||+..+.........+..+...|+...|.|| +.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 89999999988766655422 223356889999999999999999987653322223346667888888776 445
Q ss_pred HHHHHHHHHHHHhhC
Q 003806 545 ANLVNEAALLAGRLN 559 (794)
Q Consensus 545 ~~Lv~eAal~A~r~~ 559 (794)
-.+|+.|..+|..+.
T Consensus 369 Ldv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEK 383 (529)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777777776543
No 215
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.62 E-value=2.2e-07 Score=101.65 Aligned_cols=133 Identities=23% Similarity=0.331 Sum_probs=78.0
Q ss_pred CcccccccCCh-HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 328 TITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 328 ~vtf~DV~G~d-evK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
..+|+++...+ ..+..+..+.+++.. |.. .+..+|++|+||+|||||+||.|+|.++ |.++..++.++|+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35666665443 222223333444432 211 2346799999999999999999999987 78888888888766
Q ss_pred Hhhcc-chHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh-hcCCCCCCcEEEEEEcCCC
Q 003806 404 LYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 404 ~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-mdg~~~~~~VIVIaATN~p 481 (794)
.+... ....+.+.++..+ ...+|+|||+.+-. .....+..++..++.. +. .+...|.|||.+
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~---------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ---------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc---------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 43221 1112334444432 34599999996532 1222233455555543 22 233566788865
No 216
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.61 E-value=3.5e-07 Score=102.05 Aligned_cols=160 Identities=25% Similarity=0.380 Sum_probs=100.7
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCcEEEE----
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC---- 396 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-------gvpfi~i---- 396 (794)
...|.-++|++..|..|--. --+| .-.|+|+.|+.|||||+++|+||.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46788899999998876332 1222 22579999999999999999999865 3332110
Q ss_pred --ecchhH-------------------HHhhccchHHHH------HHHH----------HHHhcCCEEEEEcccchhhhc
Q 003806 397 --SASEFV-------------------ELYVGMGASRVR------DLFA----------RAKKEAPSIIFIDEIDAVAKS 439 (794)
Q Consensus 397 --s~se~~-------------------~~~vG~~~~~vr------~lF~----------~Ar~~aP~ILfIDEIDaL~~~ 439 (794)
.|..+. +.-.|.++.++- +..+ .|+ .+-.|++|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEecccccc--
Confidence 111111 111223333221 1111 011 123499999997764
Q ss_pred cCCCccccchHHHHHHHHHHHHhhcC---------C--CCCCcEEEEEEcCCC-CCCCccccCCCccceEEEeecC-CHH
Q 003806 440 RDGRFRIVSNDEREQTLNQLLTEMDG---------F--DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETP-DKI 506 (794)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emdg---------~--~~~~~VIVIaATN~p-d~LDpALlRpGRFdr~I~v~~P-d~~ 506 (794)
.++.+.||+.+.. + .-...+++|+|+|.. ..|-|.|+. ||...+.+..| +.+
T Consensus 158 -------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 158 -------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred -------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 2344555555432 1 223578999999976 478888888 99999999776 578
Q ss_pred hHHHHHHHHHh
Q 003806 507 GREAILKVHVS 517 (794)
Q Consensus 507 eR~eILk~~l~ 517 (794)
+|.+|++..+.
T Consensus 223 ~rv~Ii~r~~~ 233 (423)
T COG1239 223 ERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 217
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=5.7e-07 Score=99.04 Aligned_cols=134 Identities=18% Similarity=0.303 Sum_probs=94.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------EEEE-ec--------chhH--HHhhc--cchHHHHHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SA--------SEFV--ELYVG--MGASRVRDLFARAK 421 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-------fi~i-s~--------se~~--~~~vG--~~~~~vr~lF~~Ar 421 (794)
.+.|.++||+||+|+||+++|+++|+.+-+. +-.| +| +++. ....| -+...+|++-+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 4677889999999999999999999876331 1011 00 0110 00001 24567777766554
Q ss_pred h----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceE
Q 003806 422 K----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (794)
Q Consensus 422 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~ 497 (794)
. ....|++||++|.+.. ..-|.||+.++ ++..++++|.+|+.++.|.|.+++ | ...
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--R-C~~ 160 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--R-CQT 160 (325)
T ss_pred hccccCCceEEEEechhhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--h-ceE
Confidence 3 3345999999999852 34589999998 456778888899999999999988 5 348
Q ss_pred EEeecCCHHhHHHHHHHH
Q 003806 498 VMVETPDKIGREAILKVH 515 (794)
Q Consensus 498 I~v~~Pd~~eR~eILk~~ 515 (794)
+.+.+|+.++..+.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 899999988887777654
No 218
>PRK15115 response regulator GlrR; Provisional
Probab=98.58 E-value=4.5e-07 Score=103.25 Aligned_cols=183 Identities=23% Similarity=0.356 Sum_probs=108.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhh-----ccchH-------HHHHHHHHHHhcCCEEEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV-----GMGAS-------RVRDLFARAKKEAPSIIFI 430 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~v-----G~~~~-------~vr~lF~~Ar~~aP~ILfI 430 (794)
..++|+|++|||||++|+++.... +.||+.++|..+.+... |.... ....+|+.+ ....|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 459999999999999999998764 57999999987643211 11000 000112222 3459999
Q ss_pred cccchhhhccCCCccccchHHHHHHHHHHHHhh--cCCCC----CCcEEEEEEcCCCCCCCccccCCCccc-------eE
Q 003806 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFDS----NSAVIVLGATNRSDVLDPALRRPGRFD-------RV 497 (794)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~~~----~~~VIVIaATN~pd~LDpALlRpGRFd-------r~ 497 (794)
||||.|....+ ..+-.++..- ..... ...+.+|+||+.. ++..+ ..|+|. ..
T Consensus 235 ~~i~~l~~~~q------------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~ 299 (444)
T PRK15115 235 DEIGDMPAPLQ------------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYRLNV 299 (444)
T ss_pred EccccCCHHHH------------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHhhce
Confidence 99999864322 1222222221 11111 2367899999863 33333 234552 15
Q ss_pred EEeecCCHHhHHH----HHHHHHhc----CCCC---CccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHH
Q 003806 498 VMVETPDKIGREA----ILKVHVSK----KELP---LAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (794)
Q Consensus 498 I~v~~Pd~~eR~e----ILk~~l~~----~~l~---l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~ 566 (794)
+.+..|...+|.+ +++.++.. .+.. +.++ .++.|..+...-+.++|+++++.|+..+ ....|+.+
T Consensus 300 ~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~ 375 (444)
T PRK15115 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDA 375 (444)
T ss_pred eeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChh
Confidence 6777888888853 33444432 1111 2222 3667778886668899999999988654 34467766
Q ss_pred HHHH
Q 003806 567 DFIH 570 (794)
Q Consensus 567 d~~~ 570 (794)
++..
T Consensus 376 ~l~~ 379 (444)
T PRK15115 376 LVEQ 379 (444)
T ss_pred hhhh
Confidence 6543
No 219
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.56 E-value=3.7e-07 Score=93.08 Aligned_cols=166 Identities=27% Similarity=0.319 Sum_probs=85.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC---cEEEEec-c-hhH---HHh-------------h-----------------
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSA-S-EFV---ELY-------------V----------------- 406 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgv---pfi~is~-s-e~~---~~~-------------v----------------- 406 (794)
...++|+||+|+|||+|++.+.....- ..+++.. . ... ..+ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 457999999999999999999998732 1112211 1 000 000 0
Q ss_pred ccchHHHHHHHHHHHhc-CCEEEEEcccchhh-hccCCCccccchHHHHHHHHHHHHhhcCCCCCCcE-EEEEEcCCC--
Q 003806 407 GMGASRVRDLFARAKKE-APSIIFIDEIDAVA-KSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV-IVLGATNRS-- 481 (794)
Q Consensus 407 G~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~-~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V-IVIaATN~p-- 481 (794)
......+..+++..... ...||+|||+|.+. .... ....+..+...++......++ +|+++++..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~ 169 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----------DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLM 169 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----------THHHHHHHHHHHHH----TTEEEEEEESSHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----------hHHHHHHHHHHHhhccccCCceEEEECCchHHH
Confidence 11234556666666543 34899999999997 2211 123344444444433333444 344444311
Q ss_pred -C--CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCC-ccccchhHHhhhcCCCCHHHHH
Q 003806 482 -D--VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPL-AKDIDLGDIASMTTGFTGADLA 545 (794)
Q Consensus 482 -d--~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l-~~dvdl~~LA~~t~GfSgaDL~ 545 (794)
+ .-...+. +|+.. +.+++.+.++..++++..+... ..+ .++.+++.+...+.|. |+-|.
T Consensus 170 ~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 170 EEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT--HHHHH
T ss_pred HHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCC-HHHHh
Confidence 1 1122233 37776 9999999999999999987654 333 2344677788888774 55554
No 220
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.56 E-value=1.8e-08 Score=96.24 Aligned_cols=111 Identities=28% Similarity=0.380 Sum_probs=56.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc-hhH-HHhhccchHHHH-HHHHHHHh-cCCEEEEEcccchhhhccCC
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EFV-ELYVGMGASRVR-DLFARAKK-EAPSIIFIDEIDAVAKSRDG 442 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~s-e~~-~~~vG~~~~~vr-~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~ 442 (794)
++||.|+||+|||++|+++|+.++..|..+.+. ++. +...|...-.-. ..|...+. --..|+++|||....++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappk--- 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPK--- 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HH---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHH---
Confidence 489999999999999999999999999888764 332 222222100000 00000000 00139999999876543
Q ss_pred CccccchHHHHHHHHHHHHhhcC---------CCCCCcEEEEEEcCCCC-----CCCccccCCCcc
Q 003806 443 RFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRSD-----VLDPALRRPGRF 494 (794)
Q Consensus 443 ~~~~~~~~e~~~~Ln~LL~emdg---------~~~~~~VIVIaATN~pd-----~LDpALlRpGRF 494 (794)
+-+.||+.|.. +.-...++||||-|+.+ .|+.+++. ||
T Consensus 78 ------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 78 ------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 33455555542 12245689999999875 67788776 66
No 221
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.56 E-value=2.2e-07 Score=106.26 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=121.0
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh--
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY-- 405 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~-- 405 (794)
+.+++|......++.+.+..+. .....+++.|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 3468888877766665554322 234469999999999999999998764 5799999998764321
Q ss_pred ---hccchHH-------HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCC----CC
Q 003806 406 ---VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD----SN 469 (794)
Q Consensus 406 ---vG~~~~~-------vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~----~~ 469 (794)
.|..... ....|. ....+.|||||||.+.... ...+..++.+-. ... ..
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~~~~------------q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMPLDA------------QTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCCHHH------------HHHHHHHHhcCcEEECCCCceee
Confidence 1211000 001122 2235699999999985432 222333333211 001 12
Q ss_pred CcEEEEEEcCCCC-------CCCccccCCCccceEEEeecCCHHhHH----HHHHHHHhcC----CC---CCccccchhH
Q 003806 470 SAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSKK----EL---PLAKDIDLGD 531 (794)
Q Consensus 470 ~~VIVIaATN~pd-------~LDpALlRpGRFdr~I~v~~Pd~~eR~----eILk~~l~~~----~l---~l~~dvdl~~ 531 (794)
.++.+|++|+..- .+.+.|.. |+. .+.+..|...+|. .++.+++... +. .+.+ -.+..
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~~ 343 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDP-EALER 343 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCH-HHHHH
Confidence 3578888887641 22233332 332 3566666666554 3444444321 11 1222 13555
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 532 IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 532 LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
|......-+.++|+++++.|+..+. ...|+.+|+...+
T Consensus 344 L~~~~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~~ 381 (463)
T TIGR01818 344 LKQLRWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAEL 381 (463)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHhchHHH
Confidence 6666655577999999999987763 3567777776544
No 222
>PRK08181 transposase; Validated
Probab=98.56 E-value=4.2e-07 Score=97.68 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhcc-chHHHHHHHHHHHhcCCEEEEEcccchhhhcc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 440 (794)
..+++|+||||||||+||.+++.++ |..+++++..++.+.+... ......+.++.. ..+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC--
Confidence 4579999999999999999998754 7888999998888754321 112223344433 2456999999987642
Q ss_pred CCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 441 ~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
++.....+.++++...+ +. -+|.|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 22334455566655432 12 356678765
No 223
>PRK06526 transposase; Provisional
Probab=98.53 E-value=2.1e-07 Score=99.17 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhcc-chHHHHHHHHHHHhcCCEEEEEcccchhhhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~ 439 (794)
.+.+++|+||||||||+||.+++.++ |..+..+++.++.+..... ....+...+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 45689999999999999999998765 7777778888777644211 111222333322 3456999999987632
Q ss_pred cCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
+......+.+++..... +. .+|.|||.+
T Consensus 174 ---------~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 174 ---------EPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 22233455666654331 12 366688875
No 224
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.50 E-value=2e-06 Score=100.13 Aligned_cols=208 Identities=17% Similarity=0.212 Sum_probs=116.2
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEec-chhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA-SEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~-se~~ 402 (794)
+...+.+.+||+-...-.++++..++... .+....+-+||+||||||||++++.+|+++|..+..-.. ..+.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 44567789999988765555554443211 123344568899999999999999999999876665422 1110
Q ss_pred ------HHhhccc---------hHHHHHH-HHHHHh-----------cCCEEEEEcccchhhhccCCCccccchHHHHHH
Q 003806 403 ------ELYVGMG---------ASRVRDL-FARAKK-----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (794)
Q Consensus 403 ------~~~vG~~---------~~~vr~l-F~~Ar~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (794)
..|.+.. .....++ +..++. ..+.||+|||+-.+... ........
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~f~~~ 155 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSRFREA 155 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------hHHHHHHH
Confidence 0111110 1112222 122221 24669999999765422 11333344
Q ss_pred HHHHHHhhcCCCCCC-cEEEEEEc-------CCC--------CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC
Q 003806 456 LNQLLTEMDGFDSNS-AVIVLGAT-------NRS--------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 519 (794)
Q Consensus 456 Ln~LL~emdg~~~~~-~VIVIaAT-------N~p--------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~ 519 (794)
|.+++.. ... ++|+|.+- |.. ..+++.++...+. .+|.|.+-...-..+.|+..+...
T Consensus 156 L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 156 LRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 4444432 223 67777771 111 1456666654344 378887776666666666655543
Q ss_pred -----CC-CCccccc-hhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 003806 520 -----EL-PLAKDID-LGDIASMTTGFTGADLANLVNEAALLAG 556 (794)
Q Consensus 520 -----~l-~l~~dvd-l~~LA~~t~GfSgaDL~~Lv~eAal~A~ 556 (794)
+. ....... ++.|+..+ .+||+.+++.-...+.
T Consensus 230 ~~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 230 ARSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred hhhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 11 1222122 56666644 4699999998887776
No 225
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=8e-07 Score=98.34 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=92.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------cEEEE-ec--------chhHHHhh-----ccchHHHHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC-SA--------SEFVELYV-----GMGASRVRDLFARA 420 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------pfi~i-s~--------se~~~~~v-----G~~~~~vr~lF~~A 420 (794)
.+.|..+||+||+|+||+++|.++|..+-+ ++=.| +| .++..... .-+.+.+|++-+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 467888999999999999999999987632 11100 00 01100000 12345677766655
Q ss_pred Hh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccce
Q 003806 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (794)
Q Consensus 421 r~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr 496 (794)
.. ....|++||++|.+.. +.-|.||+.++ ++..++++|..|+.++.|.|.+++ |-.
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred hhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 42 3345999999999852 45589999998 456788999999999999999998 533
Q ss_pred EEEeecCCHHhHHHHHHH
Q 003806 497 VVMVETPDKIGREAILKV 514 (794)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~ 514 (794)
.+.+++|+.++..+.|..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 688999988777766643
No 226
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.48 E-value=8.3e-07 Score=104.64 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=128.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecchhHHHhhccch--HHH--------HHHHHHHHhcCCEEEEEccc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGA--SRV--------RDLFARAKKEAPSIIFIDEI 433 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~se~~~~~vG~~~--~~v--------r~lF~~Ar~~aP~ILfIDEI 433 (794)
.||||.|++||+||+++++++.-+. .||+.+..+--.+..+|... ..+ ..++..|. ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999874 58888776655555555431 111 11222222 249999999
Q ss_pred chhhhccCCCccccchHHHHHHHHHHHHhhcCC-----------CCCCcEEEEEEcCCC---CCCCccccCCCccceEEE
Q 003806 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVM 499 (794)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~p---d~LDpALlRpGRFdr~I~ 499 (794)
..+. ..++..|++-|+.- .-...+++||+-|.. ..|.++++. ||+.++.
T Consensus 103 n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 8764 24667777777632 112467888874432 458899998 9999999
Q ss_pred eecCCHHhH-------HHHHHHHHhcCCCCCccccchhHHhhh--cCCC-CHHHHHHHHHHHHHHHHhhCCccccHHHHH
Q 003806 500 VETPDKIGR-------EAILKVHVSKKELPLAKDIDLGDIASM--TTGF-TGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (794)
Q Consensus 500 v~~Pd~~eR-------~eILk~~l~~~~l~l~~dvdl~~LA~~--t~Gf-SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (794)
++.|+..+. ..|....-.-.++.+.+. .+..++.. ..|. |.+--..+++-|..+|..+++..|+.+|+.
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 998775432 233332221122333332 23333322 2355 778888899999999999999999999999
Q ss_pred HHHHHHhc
Q 003806 570 HAVERSIA 577 (794)
Q Consensus 570 ~Al~rvi~ 577 (794)
+|+.-++.
T Consensus 245 ~Aa~lvL~ 252 (584)
T PRK13406 245 LAARLVLA 252 (584)
T ss_pred HHHHHHHH
Confidence 99987764
No 227
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=1.2e-06 Score=96.42 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=91.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcE----EEEecchhHH-------Hhh-------c------cchHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----ISCSASEFVE-------LYV-------G------MGASRVRDLF 417 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvpf----i~is~se~~~-------~~v-------G------~~~~~vr~lF 417 (794)
.+.|..+||+||+|+||+++|.++|..+-+.- -.+.+-.+.. .++ | -+.+.||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 46788899999999999999999998763310 0011111110 000 1 1245667766
Q ss_pred HHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCc
Q 003806 418 ARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (794)
Q Consensus 418 ~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 493 (794)
+.+... .-.|++||++|.+.. ...|.||+.++. +..++++|..|+.++.|.|.+++ |
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--h
Confidence 655432 235999999999852 345899999984 44567888888989999999998 5
Q ss_pred cceEEEeecCCHHhHHHHHHH
Q 003806 494 FDRVVMVETPDKIGREAILKV 514 (794)
Q Consensus 494 Fdr~I~v~~Pd~~eR~eILk~ 514 (794)
. ..+.++.|+.++..+.|..
T Consensus 164 C-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 164 C-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred h-eEeeCCCcCHHHHHHHHHH
Confidence 3 4788999988777766653
No 228
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.48 E-value=3.3e-07 Score=103.97 Aligned_cols=203 Identities=21% Similarity=0.292 Sum_probs=118.1
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh----
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY---- 405 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~---- 405 (794)
.++|.......+.+-+..+. .....++++|++||||+++|+++.... +.||+.++|+.+....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46666665555544333322 234569999999999999999997544 5799999998664321
Q ss_pred -hccchHH-------HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-----C----
Q 003806 406 -VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S---- 468 (794)
Q Consensus 406 -vG~~~~~-------vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----~---- 468 (794)
.|..... ...+|. ....++|||||||.|....+ ..|+..++.-. .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~~~~q---------------~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDISPMMQ---------------VRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCCHHHH---------------HHHHHHHccCcEEeCCCCcee
Confidence 1111000 001122 22467999999999864322 23333332111 1
Q ss_pred CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeecCCHHhHHH----HHHHHHhcC----CCC---Cccccchh
Q 003806 469 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSKK----ELP---LAKDIDLG 530 (794)
Q Consensus 469 ~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~~----~l~---l~~dvdl~ 530 (794)
...+.+|++|+.+- ..+..+|+|.+ .+.+..|...+|.+ ++..++.+. +.+ +.+ -.+.
T Consensus 272 ~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~ 347 (441)
T PRK10365 272 SVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP-QAMD 347 (441)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCH-HHHH
Confidence 12567888887641 23334455543 56777888877753 444444431 111 222 2355
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 003806 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (794)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (794)
.|......-+.++|+++++.|+..+ ....|+.+++..
T Consensus 348 ~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~ 384 (441)
T PRK10365 348 LLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPL 384 (441)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCch
Confidence 6667665557899999999987654 344577666543
No 229
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.47 E-value=2.5e-07 Score=99.73 Aligned_cols=165 Identities=19% Similarity=0.208 Sum_probs=108.9
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+..++-++.||++.+++...+.++.+.- +.| +.|+|||||||||+...+.|..+..|.- ..+-+.
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~--~~~m~l 97 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHP--TTSMLL 97 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCC--chhHHH
Confidence 45667788999999999988887763322 223 7999999999999999999998866511 111111
Q ss_pred HHh----hccch-HHHHHHHHHHHh-------cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCC
Q 003806 403 ELY----VGMGA-SRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (794)
Q Consensus 403 ~~~----vG~~~-~~vr~lF~~Ar~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~ 470 (794)
+.- .|-+. ..-...|..++. ..+..|++||.|++....+ |+|-..+..+..
T Consensus 98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ---------------nALRRviek~t~-- 160 (360)
T KOG0990|consen 98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ---------------NALRRVIEKYTA-- 160 (360)
T ss_pred HhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH---------------HHHHHHHHHhcc--
Confidence 111 11111 112245665553 3678999999999975543 333345554444
Q ss_pred cEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCC
Q 003806 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL 521 (794)
Q Consensus 471 ~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l 521 (794)
++.++..+|.+..+.|++++ |+. .+.+.+-+...-...+.+++.....
T Consensus 161 n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 161 NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 44555678999999999987 655 4556666777777788888866533
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.46 E-value=1e-06 Score=97.18 Aligned_cols=70 Identities=23% Similarity=0.417 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhcc---chHHHHHHHHHHHhcCCEEEEEcccchh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~---~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 436 (794)
..+++|+||||||||+||.|+|.++ |..+++++..++...+... ........++... ...+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 3789999999999999999999986 7889999998887754221 1111111233322 3459999999764
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.45 E-value=3.5e-07 Score=101.33 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=67.2
Q ss_pred cc-cccCChHhHHHHHHHHHHhcChhHHhhhCC-CCCCeEEEEcCCCChHHHHHHHHHHhcCC-------cEEEEec---
Q 003806 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSA--- 398 (794)
Q Consensus 331 f~-DV~G~devK~~L~eiV~~Lk~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkALA~elgv-------pfi~is~--- 398 (794)
|+ |++|++++++++. ++++... .|. ...+.++|+||||||||+||++||+.++. |++.+..
T Consensus 49 F~~~~~G~~~~i~~lv---~~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFV---NYFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHH---HHHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 66 8999999877555 4444432 122 23467899999999999999999999987 9999999
Q ss_pred -chhHHHhhccchHHHHHHHHHHH
Q 003806 399 -SEFVELYVGMGASRVRDLFARAK 421 (794)
Q Consensus 399 -se~~~~~vG~~~~~vr~lF~~Ar 421 (794)
+.+.+..++.....+|+.|.+..
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~~ 145 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDEY 145 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHHh
Confidence 88888888888999999886553
No 232
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=1.3e-06 Score=83.02 Aligned_cols=69 Identities=25% Similarity=0.304 Sum_probs=48.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 436 (794)
+.++|+||+|||||++++.++.... -.++++++.+......... . +.+.+.......+++|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998876 7788888876654221110 0 223333322225679999999887
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=98.42 E-value=1e-06 Score=94.08 Aligned_cols=72 Identities=28% Similarity=0.384 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhHHHhhcc-chHHHHHHHHHHHhcCCEEEEEcccchh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~~~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 436 (794)
...+++|+||||||||+||.+++.+ .|..+..+++.++...+... ....+...|... ...|++++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4567999999999999999999765 47788888888776543211 112234445443 245679999999765
No 234
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=2.7e-06 Score=93.53 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=91.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-----------------------EEEEecchhHHHhhccchHHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----------------------FISCSASEFVELYVGMGASRVRDLFA 418 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvp-----------------------fi~is~se~~~~~vG~~~~~vr~lF~ 418 (794)
.+.|..+||+||.|+||+.+|+++|..+-+. |+.+....- . ..-+...+|++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-G--KSITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-C--CcCCHHHHHHHHH
Confidence 4678889999999999999999999866321 111111000 0 0013356676655
Q ss_pred HHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCcc
Q 003806 419 RAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (794)
Q Consensus 419 ~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRF 494 (794)
.+.. ....|++||++|.+.. ..-|.||+.++. +..++++|..|+.++.|.|.+++ |
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--R- 158 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--R- 158 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--c-
Confidence 5432 2345999999999852 345899999984 55678899999999999999988 5
Q ss_pred ceEEEeecCCHHhHHHHHH
Q 003806 495 DRVVMVETPDKIGREAILK 513 (794)
Q Consensus 495 dr~I~v~~Pd~~eR~eILk 513 (794)
...+.++.|+.++..+.|.
T Consensus 159 Cq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ceeEeCCCCCHHHHHHHHH
Confidence 3488999999887776664
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.6e-06 Score=92.47 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhccch-HHHHHHHHHHHhcCCEEEEEcccchh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAV 436 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~~~-~~vr~lF~~Ar~~aP~ILfIDEIDaL 436 (794)
.+.+++|+||||||||+||-|++.++ |.++..++.++++...-..-. .....-+.... ....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCc
Confidence 46789999999999999999999876 789999999998764322111 11111122211 23459999999765
No 236
>PRK06921 hypothetical protein; Provisional
Probab=98.40 E-value=2.6e-06 Score=91.51 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccch
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 435 (794)
...+++|+||||||||+|+.|+|+++ +..+++++..++....... .....+.++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 35689999999999999999999875 6778888877765543211 11122222222 2346999999944
No 237
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.4e-06 Score=105.51 Aligned_cols=128 Identities=32% Similarity=0.359 Sum_probs=91.2
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH------
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE------ 403 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~------ 403 (794)
.|+|++++...+-+.|..-+..-. +. +++-.+||.||.|+|||-||+++|..+ .-.|+.+++++|.+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~--~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLK--DP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccC--CC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 689999999888888765443110 00 355669999999999999999999976 46799999998765
Q ss_pred ---HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC---------CCc
Q 003806 404 ---LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---------NSA 471 (794)
Q Consensus 404 ---~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~---------~~~ 471 (794)
.|+|. ...-.+.+..+....|||+|||||.-. ..++|.|++.+|...- -.+
T Consensus 639 sp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh---------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 639 SPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH---------------PDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred CCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC---------------HHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 23443 333466677777777999999999742 1355666666664321 246
Q ss_pred EEEEEEcCCC
Q 003806 472 VIVLGATNRS 481 (794)
Q Consensus 472 VIVIaATN~p 481 (794)
+|||.|+|.-
T Consensus 702 ~I~IMTsn~~ 711 (898)
T KOG1051|consen 702 AIFIMTSNVG 711 (898)
T ss_pred eEEEEecccc
Confidence 8999998863
No 238
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.38 E-value=2.9e-07 Score=88.63 Aligned_cols=80 Identities=30% Similarity=0.490 Sum_probs=55.1
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---CcEEEEecchhHHHhhccchH
Q 003806 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVELYVGMGAS 411 (794)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg---vpfi~is~se~~~~~vG~~~~ 411 (794)
+|...+.+++++-+..+.. ....|||+|+|||||+++|+++....+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4666667777666655432 234699999999999999999988764 477777776542
Q ss_pred HHHHHHHHHHhcCCEEEEEcccchhhh
Q 003806 412 RVRDLFARAKKEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 412 ~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 438 (794)
.++++.+ ....|||+|+|.+..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSP 83 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-H
T ss_pred --HHHHHHc---CCCEEEECChHHCCH
Confidence 3455555 455999999999854
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.38 E-value=5.9e-07 Score=90.81 Aligned_cols=102 Identities=24% Similarity=0.324 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhcc-chHHHHHHHHHHHhcCCEEEEEcccchhhh
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 438 (794)
..+.+++|+||||||||+||.+++.++ |.++..++.+++.+..... ......+.++... .+.+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee-
Confidence 346789999999999999999998865 8899999999988754322 1122334444443 23599999985431
Q ss_pred ccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 439 SRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 439 ~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
.++.....+.+++..-. .+. ..|.|||..
T Consensus 122 ---------~~~~~~~~l~~ii~~R~---~~~--~tIiTSN~~ 150 (178)
T PF01695_consen 122 ---------LSEWEAELLFEIIDERY---ERK--PTIITSNLS 150 (178)
T ss_dssp -----------HHHHHCTHHHHHHHH---HT---EEEEEESS-
T ss_pred ---------ecccccccchhhhhHhh---ccc--CeEeeCCCc
Confidence 12233344445555432 122 345588864
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.37 E-value=1.3e-06 Score=82.03 Aligned_cols=98 Identities=27% Similarity=0.392 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc--------CCcEEEEecchhHH------H---hhc------cchHHHHHHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSASEFVE------L---YVG------MGASRVRDLFARAK 421 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el--------gvpfi~is~se~~~------~---~vG------~~~~~vr~lF~~Ar 421 (794)
.+.++++||||+|||++++.++... ..+++.+++..... . ..+ .....+.+.+...-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3569999999999999999999987 77888887764431 0 000 12333334444433
Q ss_pred -hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 422 -KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 422 -~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
.....+|+|||+|.+. + ...++.+...++ ..+-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 3333599999999974 1 345666655555 222344444443
No 241
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.30 E-value=3.3e-06 Score=89.63 Aligned_cols=179 Identities=18% Similarity=0.244 Sum_probs=117.5
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh--
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-- 401 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~-- 401 (794)
.+-+++.+.+.++....|..+... ... .++|+|||+|+||-+.+.++-+++ |++=..+....|
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~~-----------~d~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSST-----------GDF-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhccc-----------CCC-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 345677788888877777665431 112 369999999999999999998876 222111111111
Q ss_pred ----------------HH---Hhhc-cchHHHHHHHHHHHhcC---------CEEEEEcccchhhhccCCCccccchHHH
Q 003806 402 ----------------VE---LYVG-MGASRVRDLFARAKKEA---------PSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (794)
Q Consensus 402 ----------------~~---~~vG-~~~~~vr~lF~~Ar~~a---------P~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (794)
++ .-.| ...--+.+++++..+.. -.+++|.|.|.|.++.+.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~---------- 145 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQH---------- 145 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHH----------
Confidence 00 0011 12234556666554333 249999999999765432
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHH
Q 003806 453 EQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI 532 (794)
Q Consensus 453 ~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~L 532 (794)
.|-..|+.+.+ .+.+|..+|....+-+++++ | ...|.++.|+.++...++...+.+.++.++++ -+..+
T Consensus 146 -----aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--R-Cl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~-~l~rI 214 (351)
T KOG2035|consen 146 -----ALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--R-CLFIRVPAPSDEEITSVLSKVLKKEGLQLPKE-LLKRI 214 (351)
T ss_pred -----HHHHHHHHHhc--CceEEEEecCcccchhHHhh--h-eeEEeCCCCCHHHHHHHHHHHHHHhcccCcHH-HHHHH
Confidence 23334554443 45677788888889889987 4 34688999999999999999999998887755 36667
Q ss_pred hhhcCC
Q 003806 533 ASMTTG 538 (794)
Q Consensus 533 A~~t~G 538 (794)
|+.+.|
T Consensus 215 a~kS~~ 220 (351)
T KOG2035|consen 215 AEKSNR 220 (351)
T ss_pred HHHhcc
Confidence 776654
No 242
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=3.3e-06 Score=93.12 Aligned_cols=132 Identities=23% Similarity=0.311 Sum_probs=89.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC--------c-----------------EEEEecchhHHHhhc-----cchH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--------P-----------------FISCSASEFVELYVG-----MGAS 411 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv--------p-----------------fi~is~se~~~~~vG-----~~~~ 411 (794)
.+.|..+||+||+|+|||++|+.+|+.+.+ | |+.++...-. .-.| -+.+
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 478889999999999999999999987642 1 2222221000 0001 1356
Q ss_pred HHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCcc
Q 003806 412 RVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 487 (794)
Q Consensus 412 ~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpA 487 (794)
.+|++.+.+.. ....|++||++|.+.. +..|.++..++... .++.+|.+|+.++.+.+.
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 77887777653 2345999999998742 23466777776543 346677788888899999
Q ss_pred ccCCCccceEEEeecCCHHhHHHHHHH
Q 003806 488 LRRPGRFDRVVMVETPDKIGREAILKV 514 (794)
Q Consensus 488 LlRpGRFdr~I~v~~Pd~~eR~eILk~ 514 (794)
+.+ | ...+.+++|+.++..+.|..
T Consensus 160 i~S--R-c~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKS--R-CRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHH--H-hhhhcCCCCCHHHHHHHHHh
Confidence 887 4 35788999988887766643
No 243
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.26 E-value=8.1e-06 Score=95.12 Aligned_cols=163 Identities=27% Similarity=0.297 Sum_probs=82.9
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhC-CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchH
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 411 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~ 411 (794)
.|+|+|++|+-|.=.+ |--..+.+...| .+..-+|||+|.||||||.+.+.+++-+-.-. +.|+..- .-+|..+.
T Consensus 430 sIye~edvKkglLLqL-fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~-yTSGkGs--SavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL-FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGV-YTSGKGS--SAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHH-hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcce-eecCCcc--chhcceee
Confidence 4667777776542111 111112223322 34446799999999999999999998764322 2222110 00111110
Q ss_pred -----HHHHHHHHHH---hcCCEEEEEcccchhhhccCCCccccchHHHH-HHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 412 -----RVRDLFARAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE-QTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 412 -----~vr~lF~~Ar---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~-~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
.-+++.-+.. ...-.|-.|||+|++..+... +.++-.+ |+++--..-+- ..-+...-|+|++|...
T Consensus 506 Vtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrS----vLhEvMEQQTvSIAKAGII-~sLNAR~SVLAaANP~~ 580 (804)
T KOG0478|consen 506 VTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRS----VLHEVMEQQTLSIAKAGII-ASLNARCSVLAAANPIR 580 (804)
T ss_pred EEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHH----HHHHHHHHhhhhHhhccee-eeccccceeeeeecccc
Confidence 0011111111 112348889999999533221 1222111 12211111110 01234567899998532
Q ss_pred -------------CCCccccCCCccceEE-EeecCCHH
Q 003806 483 -------------VLDPALRRPGRFDRVV-MVETPDKI 506 (794)
Q Consensus 483 -------------~LDpALlRpGRFdr~I-~v~~Pd~~ 506 (794)
.|+|.|++ |||.++ .++.||..
T Consensus 581 skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 581 SKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred ccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 57899999 999765 45778766
No 244
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.23 E-value=9.3e-06 Score=96.51 Aligned_cols=222 Identities=26% Similarity=0.288 Sum_probs=126.9
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhC--CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE-EecchhHHHhhcc
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLG--ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSASEFVELYVGM 408 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg--~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~-is~se~~~~~vG~ 408 (794)
-.|.|++++|+.+.= ..+.-..+...-| .+..-+|||+|.||||||.|.|.+++-+-.-++. -.++. -+|.
T Consensus 286 PsIyG~e~VKkAilL--qLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILL--QLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGL 359 (682)
T ss_pred ccccCcHHHHHHHHH--HhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCc
Confidence 358999999987632 2222222211111 2344679999999999999999999876543322 11111 1222
Q ss_pred chHHHHHHH-----HHHH---hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC-----------CCC
Q 003806 409 GASRVRDLF-----ARAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSN 469 (794)
Q Consensus 409 ~~~~vr~lF-----~~Ar---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~ 469 (794)
++..+++-+ -.|. ...++|..|||+|.+.... -+.+...|+.. .-+
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d---------------r~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED---------------RVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH---------------HHHHHHHHHhcEeeecccceeeecc
Confidence 222222222 1111 1235699999999874321 12333333321 113
Q ss_pred CcEEEEEEcCCCC-------------CCCccccCCCccceEEEe-ecCCHHhHHH----HHHHHHhc-------------
Q 003806 470 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREA----ILKVHVSK------------- 518 (794)
Q Consensus 470 ~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~e----ILk~~l~~------------- 518 (794)
...-|+||+|+.. .|+++|++ |||..+.+ +.|+.+.-+. |+..|...
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~ 502 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDE 502 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccc
Confidence 4556888998753 56888998 99987665 4677654333 33334210
Q ss_pred -----------------CCC-CCccccchhHHh---------------hhcCCCCHHHHHHHHHHHHHHHHhhCCccccH
Q 003806 519 -----------------KEL-PLAKDIDLGDIA---------------SMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (794)
Q Consensus 519 -----------------~~l-~l~~dvdl~~LA---------------~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~ 565 (794)
+.. |.-.+-..+.|. ..+...|.++|+.+++-|-..|..+-+..|+.
T Consensus 503 ~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 503 VEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred cccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 001 110010111110 11234678999999999988998888999999
Q ss_pred HHHHHHHHHHh
Q 003806 566 IDFIHAVERSI 576 (794)
Q Consensus 566 ~d~~~Al~rvi 576 (794)
+|+.+|+.-+.
T Consensus 583 eD~~eAi~lv~ 593 (682)
T COG1241 583 EDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHH
Confidence 99999986543
No 245
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.23 E-value=3.6e-06 Score=97.33 Aligned_cols=221 Identities=22% Similarity=0.220 Sum_probs=126.6
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHh--hhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhcc
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYI--RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGM 408 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~--~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~ 408 (794)
|..|.|.+.+|.-+.= ..+---.++. ....+..-+||++|.|||||+-+.+++++-+-.-++. ++..- .-.|.
T Consensus 344 ~PsIyGhe~VK~GilL--~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaS--SaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILL--SLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKAS--SAAGL 418 (764)
T ss_pred CccccchHHHHhhHHH--HHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCccc--ccccc
Confidence 6679999999986532 2222222222 2234455679999999999999999999876544332 22100 00111
Q ss_pred chHHHHH-----HHHHHH---hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC-----------CCC
Q 003806 409 GASRVRD-----LFARAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSN 469 (794)
Q Consensus 409 ~~~~vr~-----lF~~Ar---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~ 469 (794)
++.-+++ .--+|. -....|-.|||+|++..+.+ ..+...|+.. .-+
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq---------------vAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ---------------VAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH---------------HHHHHHHHhheehheecceEEeec
Confidence 1111110 000111 01234888999999864322 1233333321 112
Q ss_pred CcEEEEEEcCCCC-------------CCCccccCCCccceEE-EeecCCHHhHHHHHHHHHhcCCCCCccccc------h
Q 003806 470 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVHVSKKELPLAKDID------L 529 (794)
Q Consensus 470 ~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I-~v~~Pd~~eR~eILk~~l~~~~l~l~~dvd------l 529 (794)
.+.-||||+|+.. .+++++++ |||..+ -++.|+...-..|-++.+..+.. +.+.+. .
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~-i~~~~~~~~~~~~ 560 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRG-IDDATERVCVYTL 560 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhcc-ccccccccccccH
Confidence 3446888998642 46788998 999764 45778876665555544433210 110000 0
Q ss_pred hH-------------------------------------HhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 530 GD-------------------------------------IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 530 ~~-------------------------------------LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
+. ..+.+.+.|.++|+.+++-+-.+|..+-+..||.+|+.+|+
T Consensus 561 e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~ 640 (764)
T KOG0480|consen 561 EQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAV 640 (764)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHH
Confidence 00 01124467889999999988888888888889999999888
Q ss_pred HH
Q 003806 573 ER 574 (794)
Q Consensus 573 ~r 574 (794)
+-
T Consensus 641 eL 642 (764)
T KOG0480|consen 641 EL 642 (764)
T ss_pred HH
Confidence 64
No 246
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.23 E-value=5e-07 Score=99.83 Aligned_cols=218 Identities=24% Similarity=0.214 Sum_probs=111.9
Q ss_pred cccCChHhHHHHHHHHHHhcChhHH-h--hhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-----H
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKY-I--RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----L 404 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~-~--~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-----~ 404 (794)
+|.|.+.+|..+. -.|-..... . ....+..-++||+|.||||||.|.+.++.-+.. -+++++..... .
T Consensus 25 ~i~g~~~iK~ail---l~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAIL---LQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHC---CCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEE
T ss_pred cCcCcHHHHHHHH---HHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCccce
Confidence 5788888887542 111111100 0 011234457999999999999999988655432 23333322100 0
Q ss_pred h---hccchHHHH-HHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-----------CC
Q 003806 405 Y---VGMGASRVR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SN 469 (794)
Q Consensus 405 ~---vG~~~~~vr-~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~ 469 (794)
. ...+.-.+. ..+-.|. ..|++|||+|.+... ....|+..|+.-. -+
T Consensus 101 ~~~d~~~~~~~leaGalvlad---~GiccIDe~dk~~~~---------------~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVLAD---GGICCIDEFDKMKED---------------DRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp ECCCGGTSSECEEE-HHHHCT---TSEEEECTTTT--CH---------------HHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred eccccccceeEEeCCchhccc---Cceeeecccccccch---------------HHHHHHHHHHcCeeccchhhhccccc
Confidence 0 000000000 1233333 349999999997421 2345555665321 12
Q ss_pred CcEEEEEEcCCCC-------------CCCccccCCCccceEEEe-ecCCHHhHHHHHHHHHhcCCC--------------
Q 003806 470 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKEL-------------- 521 (794)
Q Consensus 470 ~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~eILk~~l~~~~l-------------- 521 (794)
...-|+||+|+.. .++++|++ |||..+.+ +.|+.+.-..+.++.+.....
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 4568999998754 47889998 99988765 677765555555544433210
Q ss_pred CCccccc-------------------hhHHh-------------hhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHH
Q 003806 522 PLAKDID-------------------LGDIA-------------SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (794)
Q Consensus 522 ~l~~dvd-------------------l~~LA-------------~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (794)
.++.+.- .+.|. ......|.+.|+.+++-|-..|..+-+..|+.+|+.
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~ 320 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVE 320 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHH
Confidence 0111100 00010 011235678899999999999999999999999999
Q ss_pred HHHHH
Q 003806 570 HAVER 574 (794)
Q Consensus 570 ~Al~r 574 (794)
.|+.-
T Consensus 321 ~Ai~L 325 (331)
T PF00493_consen 321 EAIRL 325 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 247
>PF05729 NACHT: NACHT domain
Probab=98.21 E-value=1.4e-05 Score=77.32 Aligned_cols=142 Identities=16% Similarity=0.249 Sum_probs=74.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--------Cc-EEEEecchhHHH------------hhccchHHHHH-HHHHHHhcC
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAE--------VP-FISCSASEFVEL------------YVGMGASRVRD-LFARAKKEA 424 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elg--------vp-fi~is~se~~~~------------~vG~~~~~vr~-lF~~Ar~~a 424 (794)
-++|+|+||+|||++++.++..+. .+ ++.+++.+.... ........+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 488999999999999999987541 12 233333333221 01111111222 122333456
Q ss_pred CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCC
Q 003806 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (794)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (794)
+.+|+||.+|.+....+. .........+.+++.. ....+..++|.+.+.....+...+.. ...+.+...+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 779999999998753221 0011122333344432 01222333333222222122222222 2478899999
Q ss_pred HHhHHHHHHHHHhc
Q 003806 505 KIGREAILKVHVSK 518 (794)
Q Consensus 505 ~~eR~eILk~~l~~ 518 (794)
.+++.++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988753
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.20 E-value=9.1e-06 Score=77.94 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=63.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhh----------------------cc--chHHHHHHHHHH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV----------------------GM--GASRVRDLFARA 420 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~v----------------------G~--~~~~vr~lF~~A 420 (794)
++|+||||+|||++++.++..+ +.+++.++......... .. .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56677776653322110 00 011112234555
Q ss_pred HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 421 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
....|.+|+|||+..+....... .........+.+..++..+. +.++.+|.+++.+
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERAR----KGGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHh----cCCceEEEEEecC
Confidence 66778899999999886442110 01122333455555555543 2355566666544
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.20 E-value=4.8e-06 Score=89.70 Aligned_cols=138 Identities=21% Similarity=0.343 Sum_probs=77.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC-c--EEEEecchhHHHhhccchHHHHHHHHHH-----------HhcCCEEEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV-P--FISCSASEFVELYVGMGASRVRDLFARA-----------KKEAPSIIFI 430 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgv-p--fi~is~se~~~~~vG~~~~~vr~lF~~A-----------r~~aP~ILfI 430 (794)
.+.+||+||+|||||.+++..-.++.- . ...++++... .+..+.++.+.. .....+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 457999999999999999988776532 2 2233333221 112222222211 1123469999
Q ss_pred cccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC-C-------CcEEEEEEcCCCC---CCCccccCCCccceEEE
Q 003806 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-N-------SAVIVLGATNRSD---VLDPALRRPGRFDRVVM 499 (794)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~-------~~VIVIaATN~pd---~LDpALlRpGRFdr~I~ 499 (794)
||+..-..+.- +....-+.|.|++..= |+-. + .++.+|||+|.+. .+++.++| .|. .+.
T Consensus 107 DDlN~p~~d~y------gtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~ 176 (272)
T PF12775_consen 107 DDLNMPQPDKY------GTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILN 176 (272)
T ss_dssp ETTT-S---TT------S--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE
T ss_pred cccCCCCCCCC------CCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEE
Confidence 99976543321 1222335566666542 2211 1 3678889988642 46777776 554 888
Q ss_pred eecCCHHhHHHHHHHHHhc
Q 003806 500 VETPDKIGREAILKVHVSK 518 (794)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~ 518 (794)
++.|+.+....|+..++..
T Consensus 177 ~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ----TCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhh
Confidence 9999999999888777754
No 250
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.18 E-value=6.2e-05 Score=86.38 Aligned_cols=177 Identities=15% Similarity=0.201 Sum_probs=94.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc-------h------hHHHhhccchHHHHHHHHHHH----------
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-------E------FVELYVGMGASRVRDLFARAK---------- 421 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~s-------e------~~~~~vG~~~~~vr~lF~~Ar---------- 421 (794)
.+-+||+||+|||||+.++-++.++|..++.-+.. . +...+...--.........+.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~ 189 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGD 189 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccc
Confidence 34588999999999999999999999877765521 1 111011111111122222221
Q ss_pred --hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc-CCCCCCCccccC------CC
Q 003806 422 --KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT-NRSDVLDPALRR------PG 492 (794)
Q Consensus 422 --~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT-N~pd~LDpALlR------pG 492 (794)
...|.+|+|||+-...... ....+..+|.+.-... .-.+|+|.|- +.++..++..+. ..
T Consensus 190 ~~~~~~~liLveDLPn~~~~d-----------~~~~f~evL~~y~s~g-~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ 257 (634)
T KOG1970|consen 190 DLRTDKKLILVEDLPNQFYRD-----------DSETFREVLRLYVSIG-RCPLIFIITDSLSNGNNNQDRLFPKDIQEEP 257 (634)
T ss_pred ccccCceEEEeeccchhhhhh-----------hHHHHHHHHHHHHhcC-CCcEEEEEeccccCCCcchhhhchhhhhhcc
Confidence 1346699999997765321 1223333333322111 2233333332 333333332221 12
Q ss_pred ccceEEEeecCCHHhHHHHHHHHHhcCCCCCcc-cc-chhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 493 RFDRVVMVETPDKIGREAILKVHVSKKELPLAK-DI-DLGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 493 RFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~-dv-dl~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
|.+ +|.|.+-...-.++.|+..+.....+... .+ +...+-..+.| +++||+.+++...+.+
T Consensus 258 ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 258 RIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred Ccc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 443 66777666666677777777655444432 01 12233333443 5679999999888776
No 251
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.14 E-value=1.1e-05 Score=90.19 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-cEEEEecchhHHHhh------ccchHHHHHHHHHHHhcCCEEEEEcccc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEFVELYV------GMGASRVRDLFARAKKEAPSIIFIDEID 434 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv-pfi~is~se~~~~~v------G~~~~~vr~lF~~Ar~~aP~ILfIDEID 434 (794)
..+|+|++||||+|+|||+|.-.+...+.. .-..+.-.+|+.... ......+..+-+..... ..+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeee
Confidence 457999999999999999999999887754 112222223322100 01112233333333233 3399999986
Q ss_pred hhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
-- +-.....+..|+..+- ..++++|+|+|++
T Consensus 138 V~------------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT------------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred cc------------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 42 1111345556666653 3689999999985
No 252
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.06 E-value=1.7e-05 Score=81.25 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=51.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhH-HHhhcc----------------------chHHHH
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFV-ELYVGM----------------------GASRVR 414 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~-~~~vG~----------------------~~~~vr 414 (794)
|.....-++++||||+|||+++..++.+ .+.+.++++..++. +.+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4455566999999999999999998854 36678888876521 111000 011133
Q ss_pred HHHHHHHhcCCEEEEEcccchhhh
Q 003806 415 DLFARAKKEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 415 ~lF~~Ar~~aP~ILfIDEIDaL~~ 438 (794)
.+.+.+....|++|+||-+.++..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 334444555799999999999864
No 253
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.03 E-value=3.3e-05 Score=98.42 Aligned_cols=179 Identities=19% Similarity=0.293 Sum_probs=100.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcE---EEEecc---h
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---ISCSAS---E 400 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpf---i~is~s---e 400 (794)
+...+++++|.++..+++.+++.. .....+-+-|+||+|+|||+||+++++....+| +.+... .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 445689999999988877766531 223456689999999999999999988764433 111110 0
Q ss_pred hHHHhh-----------ccchHHHH-------------HHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHH
Q 003806 401 FVELYV-----------GMGASRVR-------------DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (794)
Q Consensus 401 ~~~~~v-----------G~~~~~vr-------------~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (794)
..+.+. ......+. ...+..-...+.+|++|++|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 000000 00000000 1112222345679999998642 123
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccc-cc-hhHHhh
Q 003806 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-ID-LGDIAS 534 (794)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vd-l~~LA~ 534 (794)
..+....+.+. .+..||.||... .+++....++.+.++.|+.++..+++..++-+...+ .++ .+ ..++++
T Consensus 312 ~~L~~~~~~~~--~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~ 383 (1153)
T PLN03210 312 DALAGQTQWFG--SGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVAL 383 (1153)
T ss_pred HHHHhhCccCC--CCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 33333333232 233455566643 333333467899999999999999999887553322 111 11 234667
Q ss_pred hcCCCC
Q 003806 535 MTTGFT 540 (794)
Q Consensus 535 ~t~GfS 540 (794)
.+.|..
T Consensus 384 ~c~GLP 389 (1153)
T PLN03210 384 RAGNLP 389 (1153)
T ss_pred HhCCCc
Confidence 777764
No 254
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.01 E-value=5.1e-05 Score=83.15 Aligned_cols=203 Identities=22% Similarity=0.273 Sum_probs=119.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVE 403 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~~ 403 (794)
+...|+.+++.....+.+.+-.. ++.-+ .-.+||.|.+||||-++||+.-.. ...||+.++|..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~------k~Aml----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQ------KLAML----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHH------Hhhcc----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 45568888888776655544322 12211 123999999999999999998654 368999999988755
Q ss_pred H-----hhccch--HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-------CC
Q 003806 404 L-----YVGMGA--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------SN 469 (794)
Q Consensus 404 ~-----~vG~~~--~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-------~~ 469 (794)
. ..|..+ +--..+|++|... -+|+|||..+.+.- ...+-.+|+.=. |. -.
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~l------------QaKLLRFL~DGt-FRRVGee~Ev~ 332 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPRL------------QAKLLRFLNDGT-FRRVGEDHEVH 332 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHHH------------HHHHHHHhcCCc-eeecCCcceEE
Confidence 2 223222 3345678888665 89999998775432 223333443210 11 12
Q ss_pred CcEEEEEEcCCC--CCCCccccCCCccc--eEEEeecCCHHhHHH--------HHHHHHhcCCCCCccc--cchhHHhhh
Q 003806 470 SAVIVLGATNRS--DVLDPALRRPGRFD--RVVMVETPDKIGREA--------ILKVHVSKKELPLAKD--IDLGDIASM 535 (794)
Q Consensus 470 ~~VIVIaATN~p--d~LDpALlRpGRFd--r~I~v~~Pd~~eR~e--------ILk~~l~~~~l~l~~d--vdl~~LA~~ 535 (794)
-.|.||+||..+ +.....-.|..-|. .++.+..|...+|.+ ++..+..+.+.+.++- --+..+.++
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 368999999765 22222111111121 266777888777752 2334444444433221 124455565
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 003806 536 TTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 536 t~GfSgaDL~~Lv~eAal~A 555 (794)
.+.-+.++|.|.+-+|+...
T Consensus 413 ~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 413 AWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred CCCccHHHHHHHHHHHHHHh
Confidence 55557799999998887665
No 255
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.01 E-value=8e-06 Score=95.06 Aligned_cols=184 Identities=25% Similarity=0.357 Sum_probs=110.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh--cCCcEEEEecchhHH-----HhhccchHH--------HHHHHHHHHhcCCEEEEEc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE--AEVPFISCSASEFVE-----LYVGMGASR--------VRDLFARAKKEAPSIIFID 431 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e--lgvpfi~is~se~~~-----~~vG~~~~~--------vr~lF~~Ar~~aP~ILfID 431 (794)
.+|+.|.|||||-.|||++-.. ..-||+.++|.-..+ .++|..+.. .+..+++|..+ .+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccHHH
Confidence 4999999999999999999654 457999999986644 233322222 22333333333 89999
Q ss_pred ccchhhhccCCCccccchHHHHHHHHHHHHh-----hcCCCCCCcEEEEEEcCCCCCCCccccCCCccce-------EEE
Q 003806 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVM 499 (794)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~ 499 (794)
||..+.-.- ...|-..|.+ +.+-...-.|-||+||+++ -..|.+-|||-+ .+.
T Consensus 415 eIgd~p~~~------------Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d---l~~lv~~g~fredLyyrL~~~~ 479 (606)
T COG3284 415 EIGDMPLAL------------QSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD---LAQLVEQGRFREDLYYRLNAFV 479 (606)
T ss_pred HhhhchHHH------------HHHHHHHHhhCceeccCCcceeEEEEEEeccCcC---HHHHHHcCCchHHHHHHhcCee
Confidence 998875322 1223333333 2232333458899999985 245666777754 455
Q ss_pred eecCCHHhHH---HHHHHHHhcCC---CCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 500 VETPDKIGRE---AILKVHVSKKE---LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 500 v~~Pd~~eR~---eILk~~l~~~~---l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
+.+|...+|. ..|..++.+++ +.++++. +..|......-+.++|.++++.++..+. ...|...|+...+
T Consensus 480 i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~-~~~l~~~~WPGNirel~~v~~~~~~l~~---~g~~~~~dlp~~l 554 (606)
T COG3284 480 ITLPPLRERSDRIPLLDRILKRENDWRLQLDDDA-LARLLAYRWPGNIRELDNVIERLAALSD---GGRIRVSDLPPEL 554 (606)
T ss_pred eccCchhcccccHHHHHHHHHHccCCCccCCHHH-HHHHHhCCCCCcHHHHHHHHHHHHHcCC---CCeeEcccCCHHH
Confidence 6678777765 34444444332 2233332 3333333433478999999999887763 3334444544444
No 256
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.99 E-value=1.4e-05 Score=90.41 Aligned_cols=233 Identities=21% Similarity=0.197 Sum_probs=124.4
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchH
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 411 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~ 411 (794)
-+|+|.+++|+.|.-++---.+...-..+.++..-+|+|.|.||+-|+-|.+.+.+-+-.-.+.. +.. +.-+|.++.
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTT-GrG--SSGVGLTAA 418 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTT-GRG--SSGVGLTAA 418 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceec-CCC--CCccccchh
Confidence 36999999999886544321111111122344456799999999999999999988664443332 110 011233333
Q ss_pred HHHHHHHH-------HH-hcCCEEEEEcccchhhhccCCCccccchHHHHH-HHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 412 RVRDLFAR-------AK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ-TLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 412 ~vr~lF~~-------Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~-~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
-+++-..- |- -..-.|-.|||+|++..... ..-++..+| ++.---.-+. -.-+.+.-|+||.|+..
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR----tAIHEVMEQQTISIaKAGI~-TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR----TAIHEVMEQQTISIAKAGIN-TTLNARTSILAAANPAY 493 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh----HHHHHHHHhhhhhhhhhccc-cchhhhHHhhhhcCccc
Confidence 22221100 00 01124888999999864322 112222222 1111100010 11234567888888632
Q ss_pred -------------CCCccccCCCccceEEEe-ecCCHHhHHHHHHHH----HhcCCCCCc-cccchhHH------hhhc-
Q 003806 483 -------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVH----VSKKELPLA-KDIDLGDI------ASMT- 536 (794)
Q Consensus 483 -------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~eILk~~----l~~~~l~l~-~dvdl~~L------A~~t- 536 (794)
.|++||++ |||...-+ +.||.+.-+.+.++. ...+.-++. +.++.+.+ ++..
T Consensus 494 GRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~ 571 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKN 571 (721)
T ss_pred cccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcC
Confidence 57899999 99976544 678776655444432 222111100 00111110 1111
Q ss_pred ---------------------------C-CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 537 ---------------------------T-GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 537 ---------------------------~-GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
. -.|++.|-.+++-+..+|..+-...|+.+|+.+|+.-
T Consensus 572 P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 572 PVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRL 637 (721)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 1 1366777788887777787777788888888888754
No 257
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.95 E-value=0.00014 Score=77.64 Aligned_cols=174 Identities=22% Similarity=0.316 Sum_probs=91.0
Q ss_pred HHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh--cCCc-----EEEEecc----hhHHH---hhc-
Q 003806 343 ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVP-----FISCSAS----EFVEL---YVG- 407 (794)
Q Consensus 343 ~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e--lgvp-----fi~is~s----e~~~~---~vG- 407 (794)
+++++.+.|.... ...+-|.|+|++|+|||+||+.++.. .... ++.++.. ++... ..+
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4556666555421 34556999999999999999999977 3222 2333221 11111 111
Q ss_pred --------cchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 408 --------MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 408 --------~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
.......+.+...-...+++|+||+++... .+..+...+.... .+..||.||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~--~~~kilvTTR 137 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPSFS--SGSKILVTTR 137 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HCHH--SS-EEEEEES
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc-----------------ccccccccccccc--cccccccccc
Confidence 112233344444445559999999987642 1122222221111 2445666776
Q ss_pred CCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCC-CCcc-ccchhHHhhhcCCCCHHHHHHH
Q 003806 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL-PLAK-DIDLGDIASMTTGFTGADLANL 547 (794)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l-~l~~-dvdl~~LA~~t~GfSgaDL~~L 547 (794)
...... ... .-+..+.++..+.++-.++++........ .... +-....|++.+.| .|-.|.-+
T Consensus 138 ~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 138 DRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp CGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 543221 111 11568899999999999999998765431 1111 1134678888887 45555554
No 258
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00035 Score=73.97 Aligned_cols=186 Identities=22% Similarity=0.247 Sum_probs=113.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CcEEEEecc-----hhHHHhhccc------------hHHHHHHHHHHH-hcCC
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-----EFVELYVGMG------------ASRVRDLFARAK-KEAP 425 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elg---vpfi~is~s-----e~~~~~vG~~------------~~~vr~lF~~Ar-~~aP 425 (794)
-+.++|+-|+|||.++|++...++ +-.++++.. .+.+.++... +..-+.+.+..+ ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 377899999999999997766553 223344433 2333222111 112223333333 3456
Q ss_pred EEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCC------CccceEEE
Q 003806 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRP------GRFDRVVM 499 (794)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRp------GRFdr~I~ 499 (794)
-++++||.+.+..+. -..+.-|.+.-+.....-.|+.|+-.. |.+.+++| -|++-.|+
T Consensus 133 v~l~vdEah~L~~~~------------le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 133 VVLMVDEAHDLNDSA------------LEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIE 196 (269)
T ss_pred eEEeehhHhhhChhH------------HHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEe
Confidence 899999999885321 122222333222233334566666542 22222111 27776688
Q ss_pred eecCCHHhHHHHHHHHHhcCCC--CCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHH
Q 003806 500 VETPDKIGREAILKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (794)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~~~l--~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (794)
+++.+.++-...++.++..-+. ++..+-.+..+...+.| .++-+.+++..|...|...++..|+...+.
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 8888888888999999876432 23334456777888888 588999999999999998898888776543
No 259
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.87 E-value=0.00012 Score=73.01 Aligned_cols=102 Identities=23% Similarity=0.241 Sum_probs=59.3
Q ss_pred EEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhHHHh------hccc-----------------------hH----
Q 003806 368 VLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVELY------VGMG-----------------------AS---- 411 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~~~~------vG~~-----------------------~~---- 411 (794)
+|++||||||||+|+..++.+ .|.++++++..+-.+.+ .|.. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 789999999999999988664 36777777754322210 0100 00
Q ss_pred -HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 412 -RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 412 -~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
.+..+...+....|.+|+|||+..+... ........+..++..+.. .++.+|.+++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~--------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM--------EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc--------ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 1233344445667999999999887532 112223445555555542 244555555543
No 260
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.85 E-value=9.6e-05 Score=83.94 Aligned_cols=169 Identities=27% Similarity=0.361 Sum_probs=83.7
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHh-hhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchH
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYI-RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 411 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~-~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~ 411 (794)
.++|.+++|+.+.=++ |--..+.+. .+-.+..-+|||-|.|||-|+-|.|-+-.-+-+-+ +.|+..- .-.|.+++
T Consensus 332 SIfG~~DiKkAiaClL-FgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaV-YTSGKGS--SAAGLTAS 407 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLL-FGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAV-YTSGKGS--SAAGLTAS 407 (729)
T ss_pred hhcCchhHHHHHHHHh-hcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEE-EecCCCc--ccccceee
Confidence 4778888888664332 111111000 01123345699999999999999998865443222 2222100 00111111
Q ss_pred HHHHH-----HHH--HH-hcCCEEEEEcccchhhhccCCCccccchHHHH-HHHHHHHHhhcCCCCCCcEEEEEEcCCC-
Q 003806 412 RVRDL-----FAR--AK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE-QTLNQLLTEMDGFDSNSAVIVLGATNRS- 481 (794)
Q Consensus 412 ~vr~l-----F~~--Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~-~~Ln~LL~emdg~~~~~~VIVIaATN~p- 481 (794)
-+|+- +-+ |. -..-.|+.|||+|.+-.... -.-++..+ |++.---.-+- -.-+++.-|+||.|.+
T Consensus 408 V~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR----VAIHEAMEQQTISIAKAGIT-T~LNSRtSVLAAANpvf 482 (729)
T KOG0481|consen 408 VIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR----VAIHEAMEQQTISIAKAGIT-TTLNSRTSVLAAANPVF 482 (729)
T ss_pred EEecCCcceEEEecceEEEecCCEEEeehhhccCchhh----hHHHHHHHhhhHHHhhhcce-eeecchhhhhhhcCCcc
Confidence 11110 000 00 01234999999999853321 11222222 22221111111 1124667788999864
Q ss_pred ----------CCCC--ccccCCCccceEEEeecCCHHhHHHHH
Q 003806 482 ----------DVLD--PALRRPGRFDRVVMVETPDKIGREAIL 512 (794)
Q Consensus 482 ----------d~LD--pALlRpGRFdr~I~v~~Pd~~eR~eIL 512 (794)
+.+| +.+++ |||..+.+..-..++|-..+
T Consensus 483 GRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~l 523 (729)
T KOG0481|consen 483 GRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITL 523 (729)
T ss_pred ccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHH
Confidence 2333 77888 99988888665444444333
No 261
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=8.9e-05 Score=80.50 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=81.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEec--------chhHHHh-hc----cchHHHHHHHHHHHh----cC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA--------SEFVELY-VG----MGASRVRDLFARAKK----EA 424 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~--------se~~~~~-vG----~~~~~vr~lF~~Ar~----~a 424 (794)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-+| +++.-.+ .+ -+...+|++.+.+.. ..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 4667889999999999999999999876432100011 1110000 11 134566666665543 23
Q ss_pred CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecC
Q 003806 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (794)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~P 503 (794)
..|++||++|.+.. +.-|.||+.++. +..++++|..|+.++.|.|.+++ |. ..+.|+++
T Consensus 96 ~kv~ii~~ad~mt~---------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMTL---------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhcCH---------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 35999999999853 345889999984 55678888888889999999987 52 35555543
No 262
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.80 E-value=0.00025 Score=74.81 Aligned_cols=137 Identities=17% Similarity=0.161 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCC
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR 443 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~ 443 (794)
...+..++||+|||||.++|.+|..+|.+++.++|++-.+ ...+.++|.-+... -+-+.+||++.+...-
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~v--- 100 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEV--- 100 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHH---
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHH---
Confidence 3457889999999999999999999999999999987544 35566667655443 3589999999874321
Q ss_pred ccccchHHHHHHHHHHHHhhcCCC-----------CCCcEEEEEEcCC----CCCCCccccCCCccceEEEeecCCHHhH
Q 003806 444 FRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGR 508 (794)
Q Consensus 444 ~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~VIVIaATN~----pd~LDpALlRpGRFdr~I~v~~Pd~~eR 508 (794)
. ....+.+..+...+..-. -+..+-+..|.|. ...||+.|+. +-|.+.+..||....
T Consensus 101 ----L-S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I 172 (231)
T PF12774_consen 101 ----L-SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLI 172 (231)
T ss_dssp ----H-HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHH
T ss_pred ----H-HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHH
Confidence 0 011112222222221110 1123444556663 2568888864 456899999987655
Q ss_pred HHHHHHHHhcCCC
Q 003806 509 EAILKVHVSKKEL 521 (794)
Q Consensus 509 ~eILk~~l~~~~l 521 (794)
. +..+-..++
T Consensus 173 ~---ei~L~s~GF 182 (231)
T PF12774_consen 173 A---EILLLSQGF 182 (231)
T ss_dssp H---HHHHHCCCT
T ss_pred H---HHHHHHcCc
Confidence 4 444444444
No 263
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.79 E-value=6.4e-05 Score=78.66 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh----------HHHhhccchHHHHHHHHHHH--hcCCEEEEEc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF----------VELYVGMGASRVRDLFARAK--KEAPSIIFID 431 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~----------~~~~vG~~~~~vr~lF~~Ar--~~aP~ILfID 431 (794)
.|..+|+||+||+|||++|+.+++. ..++..+.+.- ...-.......+.+.+..+. ...+.+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 4667999999999999999999742 22333332110 00000111233344444333 2345799999
Q ss_pred ccchhhh
Q 003806 432 EIDAVAK 438 (794)
Q Consensus 432 EIDaL~~ 438 (794)
.++.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999865
No 264
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00047 Score=73.73 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch------hHH------Hh--h---ccchHHHHHHHHHHHh---
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE------FVE------LY--V---GMGASRVRDLFARAKK--- 422 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se------~~~------~~--v---G~~~~~vr~lF~~Ar~--- 422 (794)
.+|..+||+||+|+||..+|.++|..+-+.--.-.|.. +.. .+ . .-+...+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 46788999999999999999999987632100001111 100 00 0 1234556666554432
Q ss_pred --cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEe
Q 003806 423 --EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (794)
Q Consensus 423 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v 500 (794)
....|++||++|.+.. ...|.||..++ ++..++++|..|+.++.+.|.+++ |- .++.+
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RC-VQYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--he-eeeec
Confidence 2346999999999852 45689999998 456778999999999999999998 53 24555
Q ss_pred ecC
Q 003806 501 ETP 503 (794)
Q Consensus 501 ~~P 503 (794)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 555
No 265
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.71 E-value=9.4e-05 Score=68.43 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elg 390 (794)
|+|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987663
No 266
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.71 E-value=0.00014 Score=80.04 Aligned_cols=127 Identities=19% Similarity=0.239 Sum_probs=71.4
Q ss_pred ChHhHHHHHHHHHHhcChhH----HhhhC---CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcE-EEEecchhHH-----
Q 003806 337 VDEAKEELEEIVEFLRSPDK----YIRLG---ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEFVE----- 403 (794)
Q Consensus 337 ~devK~~L~eiV~~Lk~p~~----~~~lg---~~~pkgVLL~GPPGTGKT~LAkALA~elgvpf-i~is~se~~~----- 403 (794)
+..+.+.|..+.+.+..+.. +..+. ..+|+|+.||||-|.|||+|.-.....+-.+- ..+.-..|+.
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 44555566666654332221 11122 34789999999999999999999988764432 2222223322
Q ss_pred --HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 404 --LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 404 --~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
...|.. ..+..+-+... ..-.||+|||+.- .+-...-.+..|+.++= ..||++++|+|.+
T Consensus 110 l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF~V------------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 110 LHTLQGQT-DPLPPIADELA-AETRVLCFDEFEV------------TDIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHcCCC-CccHHHHHHHH-hcCCEEEeeeeee------------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 112222 11111111111 2224999999853 12222346677777764 3589999999974
No 267
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.70 E-value=0.00014 Score=75.39 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
|.+...-++++||||+|||++|..+|.+. +.++++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 55556668999999999999999998643 7788888876
No 268
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.69 E-value=0.00013 Score=71.55 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~ 405 (794)
.++..++|+||||||||++|+.+|..++.+++.. ..+....
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~ 42 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEAR 42 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHH
Confidence 3567899999999999999999999999998854 4444433
No 269
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00059 Score=74.67 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------c--EEEEecchhHHHhhccchHHHHHHHHHHHh-----cC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------P--FISCSASEFVELYVGMGASRVRDLFARAKK-----EA 424 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgv-----------p--fi~is~se~~~~~vG~~~~~vr~lF~~Ar~-----~a 424 (794)
+.+...||+|+.|+||+.+|+.++..+-+ | ++.++... ..-+...++++.+.... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCC
Confidence 45667999999999999999999988622 2 22222000 01123456666655532 24
Q ss_pred CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCC
Q 003806 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (794)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (794)
..|++||++|.+. .+..|.||..++. +...+++|..|+.++.|-|.+++ | ..++.+.+|+
T Consensus 91 ~KvvII~~~e~m~---------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--R-c~~~~f~~l~ 150 (299)
T PRK07132 91 KKILIIKNIEKTS---------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--R-CQVFNVKEPD 150 (299)
T ss_pred ceEEEEecccccC---------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--C-eEEEECCCCC
Confidence 5699999998874 2345789999885 44566777777778899999887 4 4478899998
Q ss_pred HHhHHHHHHH
Q 003806 505 KIGREAILKV 514 (794)
Q Consensus 505 ~~eR~eILk~ 514 (794)
.++..+.|..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8777655543
No 270
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.67 E-value=0.00018 Score=79.27 Aligned_cols=118 Identities=21% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH-h---hc------------cchHHHHHHHHHHH
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~-~---vG------------~~~~~vr~lF~~Ar 421 (794)
|.+..+.++++||||||||+||-.++.++ |.++++++..+..+. + .| ..+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45555669999999999999988876543 677777776543321 0 01 11222222333345
Q ss_pred hcCCEEEEEcccchhhhccC--CCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
...+++|+||-+.++.+... +...........+.+++++..+.+.-...++.+|.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 67789999999999875321 1100001112234445555555544445666666653
No 271
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.67 E-value=0.00024 Score=81.76 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=57.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhh------cc--------chHHHHHHHHHHHhc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~v------G~--------~~~~vr~lF~~Ar~~ 423 (794)
|..+..-+||+||||+|||+|+..+|... +.++++++..+..+... |. ....+.++++..+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45556668999999999999999998754 67888888765443211 11 112355666777777
Q ss_pred CCEEEEEcccchhhhc
Q 003806 424 APSIIFIDEIDAVAKS 439 (794)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (794)
.|.+|+||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988643
No 272
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00036 Score=85.17 Aligned_cols=200 Identities=25% Similarity=0.342 Sum_probs=124.9
Q ss_pred cccccCC-hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEecc
Q 003806 331 FADVAGV-DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSAS 399 (794)
Q Consensus 331 f~DV~G~-devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~is~s 399 (794)
++-++|. ++ +++.+++-|-. +..++-+|+|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~de---eirRvi~iL~R---------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDE---EIRRVIEILSR---------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchH---HHHHHHHHHhc---------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 4556676 43 34444444332 223678999999999999999999864 3456777766
Q ss_pred hhHH--HhhccchHHHHHHHHHHHhc-CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 003806 400 EFVE--LYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (794)
Q Consensus 400 e~~~--~~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (794)
.+.. ++-|..+.+++.+.+.+... ..-||||||++-+...... .+ .....|-|--.+. +.++-+|+
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~----~~d~~nlLkp~L~----rg~l~~IG 321 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YG----AIDAANLLKPLLA----RGGLWCIG 321 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---ch----HHHHHHhhHHHHh----cCCeEEEe
Confidence 5443 56778889999999988844 4558999999998755432 01 2223333333222 34488998
Q ss_pred EcCCC-----CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCcccc------chhHHh--hhcCCCCHHH
Q 003806 477 ATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI------DLGDIA--SMTTGFTGAD 543 (794)
Q Consensus 477 ATN~p-----d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dv------dl~~LA--~~t~GfSgaD 543 (794)
||... -.=||++-| ||+ .+.++.|+...-..||...-.+..+.....+ ....++ ..+..+-+.-
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~ 398 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDC 398 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchh
Confidence 88532 234899998 998 6778999988777777765544222111111 111122 2334455566
Q ss_pred HHHHHHHHHHHHH
Q 003806 544 LANLVNEAALLAG 556 (794)
Q Consensus 544 L~~Lv~eAal~A~ 556 (794)
...++++|+....
T Consensus 399 aidl~dEa~a~~~ 411 (898)
T KOG1051|consen 399 AIDLEDEAAALVK 411 (898)
T ss_pred cccHHHHHHHHHh
Confidence 6778888776554
No 273
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.00046 Score=68.62 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+..+.++||||+|||++++.+|..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345569999999999999999999765
No 274
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.63 E-value=0.00051 Score=72.28 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=48.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh------hcc-----------------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM----------------------- 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~------vG~----------------------- 408 (794)
|.+...-++++||||||||+++..++... |.+.++++..+-...+ .|.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 34555679999999999999986654432 6677777654321110 000
Q ss_pred --chHHHHHHHHHHHhcCCEEEEEcccchhh
Q 003806 409 --GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (794)
Q Consensus 409 --~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 437 (794)
....+..+...+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223344455555578899999998764
No 275
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.62 E-value=0.00037 Score=71.87 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=30.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
|.....-++++||||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45555569999999999999999998764 5677777654
No 276
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.61 E-value=0.00039 Score=80.71 Aligned_cols=169 Identities=21% Similarity=0.295 Sum_probs=86.6
Q ss_pred cccCChHhHHHHHHHHHH--hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccch
Q 003806 333 DVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 410 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~--Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~ 410 (794)
.|+|.+.+|..+.-.+-- -+++.. ...++.--++||+|.|||||+-+.|.+++-...-++..--. ..-+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeE
Confidence 478888888766432211 122211 11123345699999999999999999998776655543110 00111111
Q ss_pred HHH-----HHHHHHHHh---cCCEEEEEcccchhhhccCCCccccchHHHHHH---HH--HHHHhhcCCCCCCcEEEEEE
Q 003806 411 SRV-----RDLFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT---LN--QLLTEMDGFDSNSAVIVLGA 477 (794)
Q Consensus 411 ~~v-----r~lF~~Ar~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~---Ln--~LL~emdg~~~~~~VIVIaA 477 (794)
... +++--+|.. ....|-+|||+|++....... -++..+|. +. .+.+.+. ..+.||||
T Consensus 525 ~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtS----IHEAMEQQSISISKAGIVtsLq-----ArctvIAA 595 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTS----IHEAMEQQSISISKAGIVTSLQ-----ARCTVIAA 595 (854)
T ss_pred EEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccch----HHHHHHhcchhhhhhhHHHHHH-----hhhhhhee
Confidence 111 111111110 123488999999996443221 22222221 00 1222222 34578999
Q ss_pred cCCC-----------C--CCCccccCCCccceEEEeec---CCHHhHH--HHHHHHHh
Q 003806 478 TNRS-----------D--VLDPALRRPGRFDRVVMVET---PDKIGRE--AILKVHVS 517 (794)
Q Consensus 478 TN~p-----------d--~LDpALlRpGRFdr~I~v~~---Pd~~eR~--eILk~~l~ 517 (794)
+|.. + .|-..+++ |||....|.- |-.+++. -++..|.+
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r 651 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVR 651 (854)
T ss_pred cCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhh
Confidence 9872 1 34456676 9997766653 4334433 34444544
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.59 E-value=0.00028 Score=79.41 Aligned_cols=79 Identities=29% Similarity=0.434 Sum_probs=55.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh------hcc--------chHHHHHHHHHHHhc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~------vG~--------~~~~vr~lF~~Ar~~ 423 (794)
|..+..-++|+||||+|||+|+..+|... +.++++++..+-.+.. .|. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45555669999999999999999998754 4578888765433211 111 122345666677777
Q ss_pred CCEEEEEcccchhhhc
Q 003806 424 APSIIFIDEIDAVAKS 439 (794)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (794)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 278
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.57 E-value=0.00019 Score=77.41 Aligned_cols=113 Identities=23% Similarity=0.374 Sum_probs=67.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC----------CcEEEEe-cchhHHHhhc-------------cchHHHHHHHHHHH
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAE----------VPFISCS-ASEFVELYVG-------------MGASRVRDLFARAK 421 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elg----------vpfi~is-~se~~~~~vG-------------~~~~~vr~lF~~Ar 421 (794)
++++|+||||+|||+|.+++++... .++..++ ..++...+.+ ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5899999999999999999998763 2222222 1222221111 11122334666777
Q ss_pred hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCcc--------ccCCCc
Q 003806 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA--------LRRPGR 493 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpA--------LlRpGR 493 (794)
...|.||++||+.. ...+..++..+. .+..+|++|..++. ... |+..+-
T Consensus 192 ~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEA 248 (270)
T ss_pred hCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCc
Confidence 78999999999521 122444555543 35678888875432 222 233456
Q ss_pred cceEEEee
Q 003806 494 FDRVVMVE 501 (794)
Q Consensus 494 Fdr~I~v~ 501 (794)
|++.+.+.
T Consensus 249 ~~r~i~L~ 256 (270)
T TIGR02858 249 FERYVVLS 256 (270)
T ss_pred eEEEEEEe
Confidence 77777764
No 279
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.57 E-value=8.9e-05 Score=86.55 Aligned_cols=63 Identities=27% Similarity=0.368 Sum_probs=44.9
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-CCcEEEEec
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSA 398 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-gvpfi~is~ 398 (794)
-|+|++|++++++.+.+.+ +.. ...++. ..+.++|+||||+|||+||++||..+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l---~~A--a~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYF---RHA--AQGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHH---HHH--HHhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4889999999998766544 221 112222 33578999999999999999999866 346666644
No 280
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0006 Score=74.25 Aligned_cols=128 Identities=17% Similarity=0.260 Sum_probs=82.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------cEEEE-ecc--------hhHHHh-hc--cchHHHHHHHHHHHh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC-SAS--------EFVELY-VG--MGASRVRDLFARAKK 422 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------pfi~i-s~s--------e~~~~~-vG--~~~~~vr~lF~~Ar~ 422 (794)
.+.|..+||+|| +||+++|+++|..+-+ |+=.| +|. ++.... .| -+...+|++.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 467788999996 6899999999986532 11111 111 110000 01 134677776665543
Q ss_pred ----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEE
Q 003806 423 ----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (794)
Q Consensus 423 ----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I 498 (794)
....|++||++|.+.. ..-|.||+.++. +..++++|..|+.++.|-|.+++ | ...+
T Consensus 99 ~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--R-cq~i 158 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--R-TQIF 158 (290)
T ss_pred CcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--c-ceee
Confidence 2336999999999852 345899999984 45667888888889999999988 5 3467
Q ss_pred EeecCCHHhHHHHH
Q 003806 499 MVETPDKIGREAIL 512 (794)
Q Consensus 499 ~v~~Pd~~eR~eIL 512 (794)
.|+. +.+...+++
T Consensus 159 ~f~~-~~~~~~~~L 171 (290)
T PRK07276 159 HFPK-NEAYLIQLL 171 (290)
T ss_pred eCCC-cHHHHHHHH
Confidence 7754 444444444
No 281
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.55 E-value=6.2e-05 Score=69.93 Aligned_cols=30 Identities=40% Similarity=0.697 Sum_probs=27.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
|+|.||||+||||+|+.+|..+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998876554
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.54 E-value=0.00051 Score=71.84 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecch
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASE 400 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se 400 (794)
|.+.+..++++||||||||+|+..++.+ .|.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 5666777999999999999999999654 367777777543
No 283
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.53 E-value=2.7e-05 Score=70.82 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=24.0
Q ss_pred CccceechHHHHHHHHcCCceEEEEeCcEEE
Q 003806 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIM 208 (794)
Q Consensus 178 ~~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~ 208 (794)
....+++||+|+++|++|+|++|++.++.+.
T Consensus 25 ~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~ 55 (110)
T PF06480_consen 25 SQTKEISYSEFLQMLEKGNVKKVVIQNDKIT 55 (110)
T ss_dssp -SSEE--HHHHHHTGGGT-EEEEEEETTTEE
T ss_pred CCCcEECHHHHHHHHHcCCEEEEEEECCEEE
Confidence 3466899999999999999999999987666
No 284
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.52 E-value=0.00049 Score=70.82 Aligned_cols=105 Identities=21% Similarity=0.353 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh-----cCCcE-------------EEEecchhHH----HhhccchHHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE-----AEVPF-------------ISCSASEFVE----LYVGMGASRVRDLFARAKK 422 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e-----lgvpf-------------i~is~se~~~----~~vG~~~~~vr~lF~~Ar~ 422 (794)
.+.++|+||+|+|||+|.|.++.. .|.++ ..++..+-.. .+. ....++.++++.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~ 103 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKK 103 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccC
Confidence 356899999999999999999853 34432 1111111110 111 112456677776665
Q ss_pred cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 003806 423 EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (794)
Q Consensus 423 ~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (794)
..|.+|++||.-.- ............++..+.. .+..+|.+|..++.+
T Consensus 104 ~~p~llllDEp~~g----------lD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 104 GEPVLFLLDEIFKG----------TNSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCCeEEEEecccCC----------CCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 68999999997321 1112223334555665531 244667777766543
No 285
>PRK08118 topology modulation protein; Reviewed
Probab=97.51 E-value=0.00017 Score=72.08 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (794)
.|+++||||+||||||+.|+..++.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999988764
No 286
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.51 E-value=0.0013 Score=75.41 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~ 401 (794)
..|..++|+|++|+|||+++..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 457889999999999999999998765 556666665543
No 287
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0013 Score=74.78 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=78.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (794)
.++|+||.+||||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988888775546666555443322111 122222333333244699999998763
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHH-------------HHH
Q 003806 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA-------------ILK 513 (794)
Q Consensus 447 ~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~e-------------ILk 513 (794)
.....+..+..... . .|++.+++...-....+-.=+|| ...+.+.+.+..|... .+.
T Consensus 108 ----~W~~~lk~l~d~~~----~-~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 108 ----DWERALKYLYDRGN----L-DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred ----hHHHHHHHHHcccc----c-eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 24455555554322 1 34444433322222233334688 4477888888888754 466
Q ss_pred HHHhcCCCC
Q 003806 514 VHVSKKELP 522 (794)
Q Consensus 514 ~~l~~~~l~ 522 (794)
.++...++|
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 666655554
No 288
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.50 E-value=0.00011 Score=89.92 Aligned_cols=205 Identities=17% Similarity=0.243 Sum_probs=122.1
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChh--HHhhhCCCCC-C-eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPD--KYIRLGARPP-R-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~--~~~~lg~~~p-k-gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
..+....++.|....-..+.+-.+..++++ .|...+-... + .+|++||||+|||+.+.++|.+.|..++..+.++.
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 344555667776655444444333332221 1222111111 1 36999999999999999999999999999998866
Q ss_pred HHHhh-----cc--chHHHHHHH---HHHHh-cCC-EEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCC
Q 003806 402 VELYV-----GM--GASRVRDLF---ARAKK-EAP-SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (794)
Q Consensus 402 ~~~~v-----G~--~~~~vr~lF---~~Ar~-~aP-~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~ 469 (794)
.+.+. +. +...+...| ..... ..+ -||++||+|.+.....+ . -..+.++.. .
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg-----~----v~~l~~l~~-------k 457 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRG-----G----VSKLSSLCK-------K 457 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhh-----h----HHHHHHHHH-------h
Confidence 54221 11 122233333 00000 112 29999999998651110 0 122333333 2
Q ss_pred CcEEEEEEcCCCCCCCc-cccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHH
Q 003806 470 SAVIVLGATNRSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (794)
Q Consensus 470 ~~VIVIaATN~pd~LDp-ALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv 548 (794)
..+-+|+++|..+.... ++. |-+..++|..|+...+..-+...+....+.+.++ .++.+...+ ++||++.+
T Consensus 458 s~~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~~i 529 (871)
T KOG1968|consen 458 SSRPLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQII 529 (871)
T ss_pred ccCCeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhhhhhhhcccceecCcH-HHHHHHHhc----ccCHHHHH
Confidence 33457777876654443 333 3345789999999999988888887777766554 466666655 67888888
Q ss_pred HHHHHH
Q 003806 549 NEAALL 554 (794)
Q Consensus 549 ~eAal~ 554 (794)
+.-...
T Consensus 530 ~~lq~~ 535 (871)
T KOG1968|consen 530 MQLQFW 535 (871)
T ss_pred HHHhhh
Confidence 776555
No 289
>PHA00729 NTP-binding motif containing protein
Probab=97.48 E-value=0.00019 Score=75.31 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=23.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elg 390 (794)
..++|+|+||||||+||.++|.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 290
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.46 E-value=0.00046 Score=76.23 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhHHH-h---hc------------cchHHHHHHHHHHH
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~~~-~---vG------------~~~~~vr~lF~~Ar 421 (794)
|.+..+-+.++||||||||+||-.++.+ .|.++++++..+-.+. + .| ..+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 4455556899999999999999988754 3677778876442220 0 01 11122222222345
Q ss_pred hcCCEEEEEcccchhhhccC--CCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
...+++|+||-+-++.+... +...........+.+.+.+..+...-...++.+|.+.
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tN 189 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFIN 189 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 66789999999999875321 1100001112233444555544444334556666553
No 291
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.001 Score=75.27 Aligned_cols=132 Identities=13% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc-------CCcEEEEecchhHH-------Hh---------hccchHHHHHHHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEFVE-------LY---------VGMGASRVRDLFAR 419 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el-------gvpfi~is~se~~~-------~~---------vG~~~~~vr~lF~~ 419 (794)
..|..++|+||+|+|||+++..+|..+ +..+..+++..+.. .| .......+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 34444444433221 11 11222334444443
Q ss_pred HHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCC-CcEEEEEEcCCCCCCCccccCCC--ccce
Q 003806 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPG--RFDR 496 (794)
Q Consensus 420 Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~-~~VIVIaATN~pd~LDpALlRpG--RFdr 496 (794)
. ....+|+||++..... +.. .+..+...++..... ..++|+.+|.....+...+.+-. .++
T Consensus 252 ~--~~~DlVLIDTaGr~~~----------~~~---~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~- 315 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPK----------DFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK- 315 (388)
T ss_pred h--CCCCEEEEcCCCCCcc----------CHH---HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-
Confidence 3 3456999999866421 111 133444444433322 46788888877666664443211 123
Q ss_pred EEEeecCCHHhHHH
Q 003806 497 VVMVETPDKIGREA 510 (794)
Q Consensus 497 ~I~v~~Pd~~eR~e 510 (794)
.+.+...|...+.-
T Consensus 316 ~~I~TKlDet~~~G 329 (388)
T PRK12723 316 TVIFTKLDETTCVG 329 (388)
T ss_pred EEEEEeccCCCcch
Confidence 45566666655553
No 292
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.42 E-value=0.0015 Score=69.73 Aligned_cols=114 Identities=13% Similarity=0.206 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC-----c-EEEEecc------hhHHHh--------hccch-HHH---HHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV-----P-FISCSAS------EFVELY--------VGMGA-SRV---RDLFARA 420 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgv-----p-fi~is~s------e~~~~~--------vG~~~-~~v---r~lF~~A 420 (794)
...++|.||+|+|||+|++.+++.... . ++.+... +|.... .+..+ .++ ..+...|
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 445999999999999999999987753 2 3332222 222221 11111 111 1233333
Q ss_pred H----hcCCEEEEEcccchhhhccC-------CCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 421 K----KEAPSIIFIDEIDAVAKSRD-------GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 421 r----~~aP~ILfIDEIDaL~~~r~-------~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
. ...+.+|||||+..+..... .....+.....-..+.+++..-.....+..|.+++|.
T Consensus 96 ~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 2 24567999999999865332 1121122222333445666543333344556666444
No 293
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00037 Score=78.36 Aligned_cols=111 Identities=18% Similarity=0.306 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc----C-CcEEEEecchhH-------H---Hhhcc------chHHHHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASEFV-------E---LYVGM------GASRVRDLFARA 420 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el----g-vpfi~is~se~~-------~---~~vG~------~~~~vr~lF~~A 420 (794)
......++|+||+|+|||+++..+|..+ | ..+..++...+. . ...|. ....+...+...
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 3445679999999999999999999763 3 344445544431 1 11121 112222223322
Q ss_pred HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC-CCcEEEEEEcCCCCCCCccc
Q 003806 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDVLDPAL 488 (794)
Q Consensus 421 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN~pd~LDpAL 488 (794)
...++|+||...... . ...+.+.+..+..... ...++|+.+|+..+.++..+
T Consensus 214 --~~~DlVLIDTaG~~~----------~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 --RNKHMVLIDTIGMSQ----------R----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred --cCCCEEEEcCCCCCc----------c----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 345799999984321 1 1223444455543332 24578888888777766554
No 294
>PRK13949 shikimate kinase; Provisional
Probab=97.41 E-value=0.0011 Score=66.47 Aligned_cols=32 Identities=44% Similarity=0.635 Sum_probs=29.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
+.++|+||||+|||++++.+|+.++.+|+.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35999999999999999999999999998765
No 295
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.40 E-value=0.00045 Score=65.86 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=29.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~ 405 (794)
++++||||+|||++|+.++..++ ...++...+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 78999999999999999999998 5556666665543
No 296
>PRK07261 topology modulation protein; Provisional
Probab=97.39 E-value=0.00029 Score=70.65 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
-++++|+||+|||+||+.++...+.|++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 3899999999999999999999999988776433
No 297
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.38 E-value=0.00021 Score=72.88 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=60.9
Q ss_pred EEEEcCCCChHHHHHHHH-HH---hcCCcEEEEecchhH-HHhh---ccchH-------------HHHHHHHHHHhcCCE
Q 003806 368 VLLVGLPGTGKTLLAKAV-AG---EAEVPFISCSASEFV-ELYV---GMGAS-------------RVRDLFARAKKEAPS 426 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkAL-A~---elgvpfi~is~se~~-~~~v---G~~~~-------------~vr~lF~~Ar~~aP~ 426 (794)
.+++|.||+|||+.|-.. .. ..|.+++. +..++. +... +.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 688999999999988666 43 33777665 443222 1000 00000 001111111112467
Q ss_pred EEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCC
Q 003806 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (794)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (794)
+|+|||++.+.+.+... .......+ +++.+. ...++-||.+|-.+..||+.+++ ..+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T------T----HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc-----cccchHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998776531 01112223 333332 34677888999999999999976 778888777664
No 298
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.36 E-value=0.0014 Score=74.45 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=38.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh----cCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e----lgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 437 (794)
..++++.||||||||+++.+++.. .| -.++.+.+..... . ..+.. -....+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCc
Confidence 356999999999999999998766 24 2223333322111 1 11111 2345699999998864
No 299
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.34 E-value=0.001 Score=69.08 Aligned_cols=108 Identities=22% Similarity=0.216 Sum_probs=63.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhHH--------------Hhh------------c---
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE--------------LYV------------G--- 407 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~~--------------~~v------------G--- 407 (794)
|.+.+..+|+.||||||||+|+..++.+. |-++++++..+-.+ .+. .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 56667779999999999999999876433 78888887543222 000 0
Q ss_pred ----cchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 408 ----MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 408 ----~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
....-+..+.+..+...|++++||-+..+. .. .........+..+...+. ..++.++.+..
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~------~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY------DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS------SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc------CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 011122333344455677899999999982 21 123334556666666664 23444444544
No 300
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.34 E-value=0.00089 Score=75.42 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=44.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC-----CcEEEEecchh-------HH---------HhhccchHHHH---HHHHHHH--
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASEF-------VE---------LYVGMGASRVR---DLFARAK-- 421 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elg-----vpfi~is~se~-------~~---------~~vG~~~~~vr---~lF~~Ar-- 421 (794)
.||+||||+|||+|++.|++... +.++.+-..+. .. .+......+++ ..++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998663 33333322222 11 11111222333 3344443
Q ss_pred --hcCCEEEEEcccchhhhcc
Q 003806 422 --KEAPSIIFIDEIDAVAKSR 440 (794)
Q Consensus 422 --~~aP~ILfIDEIDaL~~~r 440 (794)
.....+||||||+.+.+..
T Consensus 252 ~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHH
Confidence 2456799999999987643
No 301
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.33 E-value=0.002 Score=69.83 Aligned_cols=96 Identities=25% Similarity=0.364 Sum_probs=59.4
Q ss_pred cccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CcEEEE-------ecc
Q 003806 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISC-------SAS 399 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg-----vpfi~i-------s~s 399 (794)
.+.|+.-+++.+...+.. +.++. -+.|--+=|+|++||||..+++.||+.+- -|++.. .-.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 488999999988776654 44432 23455566889999999999999999752 122111 011
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhh
Q 003806 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (794)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 437 (794)
.-++.|-.+-...+++ .+....-+|.++||+|.|.
T Consensus 157 ~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhcC
Confidence 1122332222333333 3334555699999999985
No 302
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.31 E-value=0.00079 Score=69.58 Aligned_cols=116 Identities=19% Similarity=0.167 Sum_probs=66.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---C------CcEEEEecchhHH--Hh----h--c---------------c
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---E------VPFISCSASEFVE--LY----V--G---------------M 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---g------vpfi~is~se~~~--~~----v--G---------------~ 408 (794)
|.....-+.|+||||+|||+++..+|... + ..+++++..+-.. .+ . + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 55666679999999999999999998653 3 5666776543110 00 0 0 0
Q ss_pred chHHHHHHHHHH----HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 409 GASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 409 ~~~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
....+...+... ....+++|+||-+..+....... .....++.+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG--RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222223322 24578899999999886532110 011234455666666666555444556666554
No 303
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.31 E-value=0.0048 Score=67.20 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCcc----------------
Q 003806 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA---------------- 487 (794)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpA---------------- 487 (794)
.+-||||||+|++.+. +. .+++..+..+-...++++|.+.++. .|..+
T Consensus 172 ~~iViiIDdLDR~~~~-----------~i----~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE-----------EI----VELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred ceEEEEEcchhcCCcH-----------HH----HHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 4669999999997422 22 3333333333334678888887642 11111
Q ss_pred ccCCCccceEEEeecCCHHhHHHHHHHHHhc
Q 003806 488 LRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (794)
Q Consensus 488 LlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (794)
.+.. -|+..+.+|.|+..+...++...+..
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1210 36778899999998888888777544
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.31 E-value=0.0021 Score=67.72 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecch
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASE 400 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se 400 (794)
|..+...+|++||||||||++|..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6667777999999999999999877554 377887777554
No 305
>PRK06762 hypothetical protein; Provisional
Probab=97.28 E-value=0.00089 Score=66.03 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
+|.-++|+|+||+|||++|+.++..++..++.++...+...
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 35678999999999999999999998766777777666553
No 306
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.28 E-value=0.00099 Score=69.30 Aligned_cols=116 Identities=21% Similarity=0.216 Sum_probs=65.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecchhH--HHhh------c---------------c
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEFV--ELYV------G---------------M 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se~~--~~~v------G---------------~ 408 (794)
|.+...-+.|+||||||||+++..+|... +...++++..+-. ..+. + .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 45666668999999999999999998543 2566777764410 0000 0 0
Q ss_pred chHHHHHHH----HHHHhc-CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 409 GASRVRDLF----ARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 409 ~~~~vr~lF----~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
....+.+++ ...... .+++|+||-+.++....... .....++.+.+.+++..+..+....++.|+.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG--RGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 011112222 222344 78999999999875421110 011234445566666666544444556666554
No 307
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.27 E-value=0.00095 Score=68.48 Aligned_cols=66 Identities=24% Similarity=0.421 Sum_probs=42.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCC----cEEEEec-chhHH---------HhhccchHHHHHHHHHHHhcCCEEEEEccc
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEV----PFISCSA-SEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFIDEI 433 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgv----pfi~is~-se~~~---------~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEI 433 (794)
++++||+|+|||+++++++..... .++.+.. .++.. .-++.....+.+.++.+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 789999999999999999887642 2222211 11110 011222234556667777778999999998
No 308
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.24 E-value=0.0017 Score=71.24 Aligned_cols=161 Identities=21% Similarity=0.332 Sum_probs=95.5
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHH---HHhcCCcEEEEecchhHHH-----
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV---AGEAEVPFISCSASEFVEL----- 404 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAL---A~elgvpfi~is~se~~~~----- 404 (794)
.+.|..+..+.+.+++..-.. ......|+++||.|+|||.+.... +++.|-+|+.|....+...
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 356777777777777654111 123456999999999999887654 3367777777765433221
Q ss_pred ----------------hhccchHHHHHHHHHHHh-----cCCEEEEEcccchhhhccCCCccccchHHHHHH-HHHHHHh
Q 003806 405 ----------------YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT-LNQLLTE 462 (794)
Q Consensus 405 ----------------~vG~~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~-Ln~LL~e 462 (794)
..|.....+..++...+. ..|-|.++||||-+.+.. +|+ +..++..
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfDi 164 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHHH
Confidence 123333444444444332 223345567999876331 233 3333332
Q ss_pred hcCCCCCCcEEEEEEcCCCCCC---CccccCCCccceE-EEeec-CCHHhHHHHHHHHHh
Q 003806 463 MDGFDSNSAVIVLGATNRSDVL---DPALRRPGRFDRV-VMVET-PDKIGREAILKVHVS 517 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~L---DpALlRpGRFdr~-I~v~~-Pd~~eR~eILk~~l~ 517 (794)
-. ..+.+|.||+-|.+.+.+ ...+.+ ||... |++.+ .+..+..++++..+.
T Consensus 165 sq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 165 SQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred Hh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 22 335678899988877654 456666 89654 65544 357888888888773
No 309
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.23 E-value=0.00028 Score=75.40 Aligned_cols=99 Identities=23% Similarity=0.339 Sum_probs=61.9
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC---cEEEEe-cchh
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCS-ASEF 401 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv---pfi~is-~se~ 401 (794)
....+++++.-.....+.+.+++... .+...++++.||+|+|||++++++..+... .++.+. ..++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 34568888877776666666655432 112346999999999999999999987743 333332 1122
Q ss_pred HHH------hh-ccchHHHHHHHHHHHhcCCEEEEEcccc
Q 003806 402 VEL------YV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (794)
Q Consensus 402 ~~~------~v-G~~~~~vr~lF~~Ar~~aP~ILfIDEID 434 (794)
.-. +. ........+++..+....|++|+|+|+.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 110 00 1234466788888888999999999984
No 310
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.23 E-value=0.0017 Score=59.50 Aligned_cols=24 Identities=46% Similarity=0.450 Sum_probs=20.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el 389 (794)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999999887765
No 311
>PRK13948 shikimate kinase; Provisional
Probab=97.22 E-value=0.0012 Score=67.19 Aligned_cols=43 Identities=30% Similarity=0.491 Sum_probs=35.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG 407 (794)
++|..++|+|++|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 46688999999999999999999999999998654 44444333
No 312
>PF14516 AAA_35: AAA-like domain
Probab=97.22 E-value=0.019 Score=63.70 Aligned_cols=172 Identities=12% Similarity=0.099 Sum_probs=91.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH-------Hhh-----------c-------------cch
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LYV-----------G-------------MGA 410 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~-------~~v-----------G-------------~~~ 410 (794)
+.-+.+.||..+|||+|...+...+ |...+++++..+-. .+. + ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4468999999999999999987654 77777777664311 000 0 011
Q ss_pred HHHHHHHHHH---HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCcc
Q 003806 411 SRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 487 (794)
Q Consensus 411 ~~vr~lF~~A---r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpA 487 (794)
......|+.. ....|-||+|||+|.+..... ..++.-..+..+...-........+.+|.+...+..+...
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 2233344432 224688999999999964321 1122222233333321111111233333333222222222
Q ss_pred c-cCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHH
Q 003806 488 L-RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (794)
Q Consensus 488 L-lRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv 548 (794)
. .+|-.+...|.++..+.++...+++.|- ....... ++.+-..|.|. |.=+..+|
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~-~~~l~~~tgGh-P~Lv~~~~ 240 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQ-LEQLMDWTGGH-PYLVQKAC 240 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHH-HHHHHHHHCCC-HHHHHHHH
Confidence 2 3444455567777777888777776663 2333332 77888888885 44333333
No 313
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.20 E-value=0.0018 Score=74.78 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=54.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh------hcc--------chHHHHHHHHHHHhc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~------vG~--------~~~~vr~lF~~Ar~~ 423 (794)
|..+..-+||+|+||+|||+|+..+|... +.++++++..+-.+.. .|. .+..+.++...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 45555669999999999999999997754 4578888875443211 111 112345556666777
Q ss_pred CCEEEEEcccchhhh
Q 003806 424 APSIIFIDEIDAVAK 438 (794)
Q Consensus 424 aP~ILfIDEIDaL~~ 438 (794)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998854
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.19 E-value=0.00096 Score=66.20 Aligned_cols=106 Identities=22% Similarity=0.219 Sum_probs=63.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecchh--------HHHhhc-----cchHHHHHHHHHHHhcCCE
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEF--------VELYVG-----MGASRVRDLFARAKKEAPS 426 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is~se~--------~~~~vG-----~~~~~vr~lF~~Ar~~aP~ 426 (794)
+.+...+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++ .+..+.+-.+..|-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 445567999999999999999999987521 0122222111 111111 1123445556677778899
Q ss_pred EEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
++++||-.. +.+....+.+.+++.++.. + +..+|.+|+.++
T Consensus 103 illlDEP~~-----------~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTA-----------ALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 999999643 3455556667777776631 2 334555666543
No 315
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.18 E-value=0.0023 Score=71.49 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=85.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCc--EEEEecchhHHHhhccchHHHHHH----------------------H
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFVELYVGMGASRVRDL----------------------F 417 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvp--fi~is~se~~~~~vG~~~~~vr~l----------------------F 417 (794)
-.+|+|+.|||.-|||||+|.-..-..+-.. =-.+.-.+|+.. ..+++.++ .
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~----VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~v 186 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLS----VHKRMHELKQEQGAEKPGYAKSWEIDPLPVV 186 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHH----HHHHHHHHHHhccccCccccccccCCccHHH
Confidence 4579999999999999999999887554210 001111222210 00111111 1
Q ss_pred HHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC-CCCCccccCCCccce
Q 003806 418 ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DVLDPALRRPGRFDR 496 (794)
Q Consensus 418 ~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p-d~LDpALlRpGRFdr 496 (794)
..--....++|.+||+.-- +-...-+|+.|...+- +.||+++||+||. +.|-..=+ .|
T Consensus 187 A~eIa~ea~lLCFDEfQVT------------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGl-----QR 245 (467)
T KOG2383|consen 187 ADEIAEEAILLCFDEFQVT------------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGL-----QR 245 (467)
T ss_pred HHHHhhhceeeeechhhhh------------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcch-----hh
Confidence 1111123469999998542 1111234556665543 3589999999985 44432212 22
Q ss_pred EEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcC-C--CCH-HHHHHHHHHHH
Q 003806 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT-G--FTG-ADLANLVNEAA 552 (794)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~-G--fSg-aDL~~Lv~eAa 552 (794)
...+| -.++|+.++.- +.+...+|....+.... + |.+ .|...++++-.
T Consensus 246 ~~F~P------fI~~L~~rc~v--i~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 246 ENFIP------FIALLEERCKV--IQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hhhhh------HHHHHHHhheE--EecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 22222 34677777754 35677788883332221 1 233 47887777765
No 316
>PRK14974 cell division protein FtsY; Provisional
Probab=97.18 E-value=0.002 Score=71.56 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH-------Hh---hc---------c-chHHHHHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY---VG---------M-GASRVRDLFARA 420 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~-------~~---vG---------~-~~~~vr~lF~~A 420 (794)
.|.-++|+||||+|||+++..+|..+ |..+..+++..+.. .+ .| . ....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999888888654 55555565543211 01 01 0 112234445555
Q ss_pred HhcCCEEEEEcccchh
Q 003806 421 KKEAPSIIFIDEIDAV 436 (794)
Q Consensus 421 r~~aP~ILfIDEIDaL 436 (794)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555568999987554
No 317
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.17 E-value=0.00063 Score=68.32 Aligned_cols=27 Identities=41% Similarity=0.673 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCcE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPF 393 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el---gvpf 393 (794)
.++|+|+||+||||+++.++..+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999999887 5553
No 318
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.16 E-value=0.00072 Score=65.28 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=31.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG 407 (794)
.++|+||||+|||++|+.+|..++.+++..+ .+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 3899999999999999999999999987544 45444333
No 319
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.13 E-value=0.0017 Score=66.56 Aligned_cols=97 Identities=28% Similarity=0.381 Sum_probs=52.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhHHH----hhccchHHHHHHHHHHH---------hcCCEEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL----YVGMGASRVRDLFARAK---------KEAPSIIF 429 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~~~----~vG~~~~~vr~lF~~Ar---------~~aP~ILf 429 (794)
+..+|.||||||||++++.++.. .+..++.+..+.-... ..+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 35888999999999999998654 3677777765432211 11112222222222111 12236999
Q ss_pred EcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
|||+..+. ...+..++..+.. ...++++++-.+
T Consensus 99 VDEasmv~---------------~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 99 VDEASMVD---------------SRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ESSGGG-B---------------HHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred EecccccC---------------HHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 99997764 1345566666552 234677776655
No 320
>PRK05973 replicative DNA helicase; Provisional
Probab=97.12 E-value=0.0059 Score=64.76 Aligned_cols=39 Identities=36% Similarity=0.342 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
|..+..-++|.|+||+|||+++-.+|.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 45555669999999999999999887644 7777777654
No 321
>PRK09354 recA recombinase A; Provisional
Probab=97.12 E-value=0.0019 Score=71.96 Aligned_cols=78 Identities=24% Similarity=0.260 Sum_probs=49.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhHHH-h---hc------------cchHHHHHHHHHHH
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~~~-~---vG------------~~~~~vr~lF~~Ar 421 (794)
|.+..+-++++||||||||+||-.++.+ .|-+.++++..+-.+. + .| ..+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4455556899999999999999987654 3677777776542221 0 01 11112222222334
Q ss_pred hcCCEEEEEcccchhhh
Q 003806 422 KEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (794)
...+.+|+||=+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999875
No 322
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.12 E-value=0.0014 Score=62.89 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=39.6
Q ss_pred ccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
..|.|++-+++.+...+.. +.++ .-+.|.-+-|.||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4699999999988776654 4442 12345556689999999999999999975
No 323
>PRK13947 shikimate kinase; Provisional
Probab=97.12 E-value=0.00044 Score=68.39 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
+|+|.|+||||||++++.+|..+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 324
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.10 E-value=0.00034 Score=69.18 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=35.6
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc---EEEEecchh
Q 003806 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF 401 (794)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp---fi~is~se~ 401 (794)
++|-++..++|...++. . ....++.++|+||+|+|||+|++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 56777766666665531 1 23456789999999999999999997765333 777777655
No 325
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0012 Score=66.60 Aligned_cols=40 Identities=30% Similarity=0.612 Sum_probs=32.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG 407 (794)
+.+.|+|++|+|||++.+++|+.++.||+..+ .+++...|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g 42 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG 42 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHC
Confidence 46999999999999999999999999998764 34443333
No 326
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.08 E-value=0.0055 Score=63.62 Aligned_cols=109 Identities=20% Similarity=0.212 Sum_probs=62.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhh------c--------c-------chH----H
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------G--------M-------GAS----R 412 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~v------G--------~-------~~~----~ 412 (794)
|.++...+++.|+||+|||+++..++.+. |.+.++++..+-.+... | . ... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 55566679999999999999999887543 77777777654322100 0 0 000 0
Q ss_pred HHH----HHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 413 VRD----LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 413 vr~----lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
+.. +.....+..++.++||-+..+... .....+..+.+..++..+.. .++.++.+++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~------~~~~~~~r~~l~~l~~~lk~----~~~tvll~s~ 152 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL------FDDDAERRTELFRFYSSLRE----TGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh------cCCHHHHHHHHHHHHHHHHh----CCCEEEEEEc
Confidence 111 112233456788999988877221 12234455666777777652 2444444553
No 327
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.08 E-value=0.00066 Score=68.78 Aligned_cols=72 Identities=25% Similarity=0.371 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecc-hhH-------H------HhhccchHHHHHHHHHHHhcCCE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFV-------E------LYVGMGASRVRDLFARAKKEAPS 426 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~s-e~~-------~------~~vG~~~~~vr~lF~~Ar~~aP~ 426 (794)
+....+++.||+|+|||++++++++... ...+.+... ++. . ...+.....+.+++..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3456799999999999999999998753 122222111 110 0 00011223466777778888899
Q ss_pred EEEEcccc
Q 003806 427 IIFIDEID 434 (794)
Q Consensus 427 ILfIDEID 434 (794)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999983
No 328
>PTZ00202 tuzin; Provisional
Probab=97.06 E-value=0.032 Score=63.88 Aligned_cols=65 Identities=15% Similarity=0.302 Sum_probs=50.8
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
+-...+.+|-++...+|.+++... ....|+-+.|+||+|||||+|++.++..++.+.+.++....
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~ 322 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGT 322 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCH
Confidence 344668999999888888877532 23345678999999999999999999999988777766543
No 329
>PRK03839 putative kinase; Provisional
Probab=97.05 E-value=0.00048 Score=69.04 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
.|+|.|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997653
No 330
>PRK13946 shikimate kinase; Provisional
Probab=97.04 E-value=0.0015 Score=66.15 Aligned_cols=34 Identities=35% Similarity=0.624 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
.++.|+|.|+||+|||++++.+|..+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4567999999999999999999999999998765
No 331
>PRK10536 hypothetical protein; Provisional
Probab=97.03 E-value=0.0025 Score=68.25 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999885
No 332
>PRK00625 shikimate kinase; Provisional
Probab=97.03 E-value=0.00057 Score=68.98 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
.|+|+|+||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 333
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.03 E-value=0.0027 Score=67.67 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s 399 (794)
|..+..-++|.||||+|||+++..+|..+ |.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 45566679999999999999999887653 6677777653
No 334
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.02 E-value=0.0014 Score=72.90 Aligned_cols=69 Identities=23% Similarity=0.375 Sum_probs=45.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC----cEEEEe-cchhHH---------HhhccchHHHHHHHHHHHhcCCEEEEEc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCS-ASEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFID 431 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgv----pfi~is-~se~~~---------~~vG~~~~~vr~lF~~Ar~~aP~ILfID 431 (794)
..+|++||+|+|||++.+++.+...- .++.+. ..++.. .-+|.......+.++.+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 45899999999999999999886642 233331 112110 1122222345666777778899999999
Q ss_pred ccc
Q 003806 432 EID 434 (794)
Q Consensus 432 EID 434 (794)
|+.
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 983
No 335
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.02 E-value=0.00064 Score=74.38 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=47.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEec-chhH-------HHhhccchHHHHHHHHHHHhcCCEEEEEc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA-SEFV-------ELYVGMGASRVRDLFARAKKEAPSIIFID 431 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~-se~~-------~~~vG~~~~~vr~lF~~Ar~~aP~ILfID 431 (794)
.++++++||+|+|||++++++++.. +..++.+.- .++. ..........+.++++.+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4579999999999999999999875 233333321 1111 01112222367788888989999999999
Q ss_pred ccc
Q 003806 432 EID 434 (794)
Q Consensus 432 EID 434 (794)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 336
>PRK04296 thymidine kinase; Provisional
Probab=97.01 E-value=0.0036 Score=63.89 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=41.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc----hhHH---Hhhccc-----hHHHHHHHHHHH--hcCCEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EFVE---LYVGMG-----ASRVRDLFARAK--KEAPSIIF 429 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s----e~~~---~~vG~~-----~~~vr~lF~~Ar--~~aP~ILf 429 (794)
-.+++||||+|||+++..++.++ +..++.+..+ .... ...|.. .....+++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 5565555431 1100 011110 112334444443 34567999
Q ss_pred Ecccchh
Q 003806 430 IDEIDAV 436 (794)
Q Consensus 430 IDEIDaL 436 (794)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999654
No 337
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.00 E-value=0.0043 Score=64.54 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~ 387 (794)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 46799999999999999999983
No 338
>PRK10867 signal recognition particle protein; Provisional
Probab=97.00 E-value=0.0098 Score=68.34 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=47.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhHHH----------------hh---c-cchHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL----------------YV---G-MGASRVRDLF 417 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~~~----------------~v---G-~~~~~vr~lF 417 (794)
..+|.-++++||+|+|||+++..+|..+ |..+..+++..+... +. + .......+..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457889999999999999888777643 666777776543221 10 0 1122233455
Q ss_pred HHHHhcCCEEEEEcccch
Q 003806 418 ARAKKEAPSIIFIDEIDA 435 (794)
Q Consensus 418 ~~Ar~~aP~ILfIDEIDa 435 (794)
..++.....+|+||=.-.
T Consensus 177 ~~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 566666677899887644
No 339
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.99 E-value=0.029 Score=61.82 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=68.9
Q ss_pred HHHHHHHHHh--c-CCEEEEEcccchhhhccCCC--ccccchHHHHHHHHHHHHhhcCCCC-CCcEEE--EEEcCC---C
Q 003806 413 VRDLFARAKK--E-APSIIFIDEIDAVAKSRDGR--FRIVSNDEREQTLNQLLTEMDGFDS-NSAVIV--LGATNR---S 481 (794)
Q Consensus 413 vr~lF~~Ar~--~-aP~ILfIDEIDaL~~~r~~~--~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIV--IaATN~---p 481 (794)
+..++++... . .|.++-||++.++.....=. ....-+...-.....|+..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3344444432 2 47788899999998652100 0111233334455555555433222 344454 565532 2
Q ss_pred C--CCCccccCCCc------cc-------------eEEEeecCCHHhHHHHHHHHHhcCCCCC--ccccchhHHhhhcCC
Q 003806 482 D--VLDPALRRPGR------FD-------------RVVMVETPDKIGREAILKVHVSKKELPL--AKDIDLGDIASMTTG 538 (794)
Q Consensus 482 d--~LDpALlRpGR------Fd-------------r~I~v~~Pd~~eR~eILk~~l~~~~l~l--~~dvdl~~LA~~t~G 538 (794)
. .++.++....- |. ..|.++..+.+|-..++..+....-+.- .++.-.+.+...+.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~- 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN- 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-
Confidence 2 45655543211 11 2678888999999999999887643321 11112233333333
Q ss_pred CCHHHHHH
Q 003806 539 FTGADLAN 546 (794)
Q Consensus 539 fSgaDL~~ 546 (794)
.+++++.+
T Consensus 301 GNp~el~k 308 (309)
T PF10236_consen 301 GNPRELEK 308 (309)
T ss_pred CCHHHhcc
Confidence 46777653
No 340
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.98 E-value=0.0045 Score=62.27 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
.++.--++|+||+||||++|.|++|.-
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 345556999999999999999999974
No 341
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.96 E-value=0.0081 Score=62.43 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=29.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEec
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~ 398 (794)
|......++++||||+|||+|+..++.+ .+-+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5666777999999999999999987643 2556666664
No 342
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0028 Score=67.14 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
--+.|.||+|||||||.+.+|+-
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34899999999999999999984
No 343
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.95 E-value=0.002 Score=66.28 Aligned_cols=131 Identities=24% Similarity=0.348 Sum_probs=68.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH-------HHh---hc----------cchHHHHHHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG----------MGASRVRDLFARAK 421 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~-------~~~---vG----------~~~~~vr~lF~~Ar 421 (794)
|+-++|+||+|+|||+.+-.+|..+ +..+-.+++..+. ..| .+ ......++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6679999999999999999898754 4444444443331 111 11 11233445566666
Q ss_pred hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCcccc--CCCccceEEE
Q 003806 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR--RPGRFDRVVM 499 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALl--RpGRFdr~I~ 499 (794)
...-.+|+||-.... ..+.+..+.+..++..+ .+..-.+|+.++-..+.++.... +...++ .+.
T Consensus 81 ~~~~D~vlIDT~Gr~----------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~-~lI 146 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS----------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQALAFYEAFGID-GLI 146 (196)
T ss_dssp HTTSSEEEEEE-SSS----------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC-EEE
T ss_pred hcCCCEEEEecCCcc----------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHHHHHHhhcccCc-eEE
Confidence 555569999875322 12233334445555554 22334556666655555543322 111234 344
Q ss_pred eecCCHHhHH
Q 003806 500 VETPDKIGRE 509 (794)
Q Consensus 500 v~~Pd~~eR~ 509 (794)
+...|...+.
T Consensus 147 lTKlDet~~~ 156 (196)
T PF00448_consen 147 LTKLDETARL 156 (196)
T ss_dssp EESTTSSSTT
T ss_pred EEeecCCCCc
Confidence 6666655444
No 344
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.95 E-value=0.003 Score=65.99 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s 399 (794)
|..+..-++|.|+||+|||+++..++... +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 66666779999999999999999886543 7788777743
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.94 E-value=0.00083 Score=67.22 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
.+-++|.||||+|||++|+.++..++.+++.++...+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 346899999999999999999999988888776665543
No 346
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0061 Score=68.96 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH----H---Hh---------hccchHHHHHHHHHHHh-c
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----E---LY---------VGMGASRVRDLFARAKK-E 423 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~----~---~~---------vG~~~~~vr~lF~~Ar~-~ 423 (794)
.|+.++|+||+|+|||+++..+|..+ |..+..+++..+. + .| +......+.+.+..++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 46789999999999999999999765 4455555553331 1 11 12344556666665553 2
Q ss_pred CCEEEEEcccch
Q 003806 424 APSIIFIDEIDA 435 (794)
Q Consensus 424 aP~ILfIDEIDa 435 (794)
...+||||-.-.
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 346899887643
No 347
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.93 E-value=0.00073 Score=67.52 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
++++||||+|||++|+.+|.+.|++. ++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998654 55555554
No 348
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0088 Score=68.22 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhHH-------Hh---hc---cchHHHHHHHHHHHhcCCE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE-------LY---VG---MGASRVRDLFARAKKEAPS 426 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~~-------~~---vG---~~~~~vr~lF~~Ar~~aP~ 426 (794)
.+.-++|+||+|+|||+++..+|.+. |..+..+++..+.. .| .| .....+.++...+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 45568999999999999999999754 44455555544322 11 11 1112233444444444556
Q ss_pred EEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccc
Q 003806 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPAL 488 (794)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpAL 488 (794)
+|+||=.-... .+...-..+..++...........++|+.+|...+.+....
T Consensus 302 ~VLIDTaGr~~----------rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 302 LILIDTAGYSH----------RNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEEEeCCCCCc----------cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 88887532111 11112222333333322112234567777776655554443
No 349
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.91 E-value=0.0043 Score=78.35 Aligned_cols=138 Identities=27% Similarity=0.329 Sum_probs=90.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH---Hhh----cc--chHHHH-HHHHHHHhcCCEEEEEccc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---LYV----GM--GASRVR-DLFARAKKEAPSIIFIDEI 433 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~---~~v----G~--~~~~vr-~lF~~Ar~~aP~ILfIDEI 433 (794)
..+++||-|.||+|||+|+.|+|++.|-.++.++.++-.+ .|- +. |+-+.+ .-|-.|.+..- -|++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~-WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG-WVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCC-EEEeehh
Confidence 3466999999999999999999999999999999875433 221 11 111222 22334433333 7889998
Q ss_pred chhhhccCCCccccchHHHHHHHHHHHHh--------hc-CCCCCCcEEEEEEcCCC------CCCCccccCCCccceEE
Q 003806 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTE--------MD-GFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVV 498 (794)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~Ln~LL~e--------md-g~~~~~~VIVIaATN~p------d~LDpALlRpGRFdr~I 498 (794)
.-.. +..-+-+|..|.. +| .|.-..+..|.||-|+. ..|+..++. ||. +|
T Consensus 1621 NLaS------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1621 NLAS------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhhH------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 6432 1122234444432 22 13345678899998865 468888887 887 77
Q ss_pred EeecCCHHhHHHHHHHHHh
Q 003806 499 MVETPDKIGREAILKVHVS 517 (794)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~ 517 (794)
.++....++...|......
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred EecccccchHHHHHHhhCC
Confidence 8888888887777766543
No 350
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.90 E-value=0.0053 Score=59.73 Aligned_cols=101 Identities=26% Similarity=0.382 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCc--EEEEecc---hhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSAS---EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvp--fi~is~s---e~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 436 (794)
..+...+.|.||+|+|||+|++++++..... -+.++.. .+...+.+ ..+-+-.+..|-...|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~~- 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPTN- 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcc-
Confidence 4455678999999999999999999875210 0111110 00000111 12333345666677889999999643
Q ss_pred hhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
+.+......+.+++.++. . .+|.+|+.++
T Consensus 100 ----------~LD~~~~~~l~~~l~~~~------~-til~~th~~~ 128 (144)
T cd03221 100 ----------HLDLESIEALEEALKEYP------G-TVILVSHDRY 128 (144)
T ss_pred ----------CCCHHHHHHHHHHHHHcC------C-EEEEEECCHH
Confidence 233344455555665541 2 4555666543
No 351
>PRK14532 adenylate kinase; Provisional
Probab=96.90 E-value=0.00084 Score=67.67 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=29.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
.++|.||||+|||++|+.+|...|.+++ +.++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987664 55555543
No 352
>PRK14531 adenylate kinase; Provisional
Probab=96.89 E-value=0.00097 Score=67.33 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=29.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
+.++++||||+|||++++.+|...|+++++ +++++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 459999999999999999999999987655 44554
No 353
>PHA02624 large T antigen; Provisional
Probab=96.88 E-value=0.00039 Score=81.67 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=31.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
|.+.-+.+||+||||||||+++++|++.++-..+.++++.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 3344458999999999999999999999965566677543
No 354
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.88 E-value=0.0071 Score=64.79 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~s 399 (794)
|..+...++++||||||||+++..+|.+ .|-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4556667999999999999999988654 35677666644
No 355
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.88 E-value=0.0068 Score=70.66 Aligned_cols=78 Identities=26% Similarity=0.272 Sum_probs=54.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhh------cc----------------------c
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM----------------------G 409 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~v------G~----------------------~ 409 (794)
|..+...+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+. |. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 45556669999999999999999997754 66778887654433111 10 0
Q ss_pred hHHHHHHHHHHHhcCCEEEEEcccchhhh
Q 003806 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 410 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 438 (794)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 33445566666777899999999998753
No 356
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.88 E-value=0.0067 Score=61.44 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=66.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------------cEEEEecchhHHHhh------c------cchHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------PFISCSASEFVELYV------G------MGASRVRDL 416 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------------pfi~is~se~~~~~v------G------~~~~~vr~l 416 (794)
+.+..-+.|.||.|+|||+|.++++...|- ++.++.-.++.+.+- . .+..+.+-.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 344556899999999999999999743321 122221111222110 0 011234445
Q ss_pred HHHHHhcC--CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCcc
Q 003806 417 FARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (794)
Q Consensus 417 F~~Ar~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRF 494 (794)
+..|-... |.++++||--. +.+....+.+.+++.++.. .+..||.+|+.++.+ + ..
T Consensus 98 laral~~~~~p~llLlDEPt~-----------~LD~~~~~~l~~~l~~~~~----~g~tvIivSH~~~~~-----~--~~ 155 (176)
T cd03238 98 LASELFSEPPGTLFILDEPST-----------GLHQQDINQLLEVIKGLID----LGNTVILIEHNLDVL-----S--SA 155 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcc-----------cCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH-----H--hC
Confidence 66666677 89999999743 2344445555566665531 234555667665422 2 35
Q ss_pred ceEEEeec
Q 003806 495 DRVVMVET 502 (794)
Q Consensus 495 dr~I~v~~ 502 (794)
|+.+.+..
T Consensus 156 d~i~~l~~ 163 (176)
T cd03238 156 DWIIDFGP 163 (176)
T ss_pred CEEEEECC
Confidence 67776644
No 357
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.88 E-value=0.00086 Score=64.02 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
+.+.|+||||||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998775
No 358
>PLN02200 adenylate kinase family protein
Probab=96.88 E-value=0.0012 Score=69.85 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
+.+.|..+++.||||+|||++|+.+|.++|++ .+++++++.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 35567779999999999999999999999865 466666654
No 359
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.003 Score=62.95 Aligned_cols=107 Identities=24% Similarity=0.330 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCc--EEEEecchhH--------H----------Hhh-------ccchHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFV--------E----------LYV-------GMGASRVR 414 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvp--fi~is~se~~--------~----------~~v-------G~~~~~vr 414 (794)
+.+...+.|.||+|+|||+|.+.+++..... -+.+++.... . .+. =.+..+-+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 4456679999999999999999999875210 0112211110 0 000 00112223
Q ss_pred HHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 003806 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (794)
Q Consensus 415 ~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (794)
-.+..|-...|.++++||--+ +.+....+.+.+++.++. . +..+|.+|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~-----------gLD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATS-----------ALDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCc-----------CCCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 345556667899999999643 234444556666666653 1 24555667766544
No 360
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.0027 Score=66.53 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=45.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc--------CCcEEEEecc-hhHHHhhcc-------------chHHHHHHHHHHHhc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSAS-EFVELYVGM-------------GASRVRDLFARAKKE 423 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el--------gvpfi~is~s-e~~~~~vG~-------------~~~~vr~lF~~Ar~~ 423 (794)
.+.|+.||||||||++.|-+|.-+ +..+..++-+ +......|. ..-+-.-+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999998754 2334444432 222211221 111223455666789
Q ss_pred CCEEEEEcccch
Q 003806 424 APSIIFIDEIDA 435 (794)
Q Consensus 424 aP~ILfIDEIDa 435 (794)
.|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999954
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0031 Score=61.77 Aligned_cols=107 Identities=26% Similarity=0.354 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCc--EEEEecchhHH-------Hhhc-----cchHHHHHHHHHHHhcCCEEE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFVE-------LYVG-----MGASRVRDLFARAKKEAPSII 428 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvp--fi~is~se~~~-------~~vG-----~~~~~vr~lF~~Ar~~aP~IL 428 (794)
.+...+.|.||+|+|||+|++++++..... -+.++...... ..++ .+....+-.+..+-...|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 445569999999999999999999876421 12232221110 0011 111233334555666678899
Q ss_pred EEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 003806 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (794)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (794)
++||... +.+......+..++.++.. . +..++.+|+..+.+
T Consensus 103 ilDEp~~-----------~lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 143 (157)
T cd00267 103 LLDEPTS-----------GLDPASRERLLELLRELAE---E-GRTVIIVTHDPELA 143 (157)
T ss_pred EEeCCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 9999754 2333444556666665532 1 23455566655433
No 362
>PRK04328 hypothetical protein; Provisional
Probab=96.85 E-value=0.0099 Score=63.27 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~s 399 (794)
|.++...+|++||||||||+|+..++.+ .|-+.++++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 4556677999999999999999887543 36677777653
No 363
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.85 E-value=0.0021 Score=75.78 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=24.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
..++...+|+.||+|||||+|.|++|+-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4566677999999999999999999984
No 364
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.83 E-value=0.0058 Score=61.52 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=55.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-----H---h---------hccchHHHHHHHHHHHhcCCEEEEE
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----L---Y---------VGMGASRVRDLFARAKKEAPSIIFI 430 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-----~---~---------vG~~~~~vr~lF~~Ar~~aP~ILfI 430 (794)
+|++||||+|||++|..++.+.+.+.+++....-.+ . + ..+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 689999999999999999988777887776543211 1 0 0112223344332222 4669999
Q ss_pred cccchhhhccCCCccccc--hHHHHHHHHHHHHhhc
Q 003806 431 DEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMD 464 (794)
Q Consensus 431 DEIDaL~~~r~~~~~~~~--~~e~~~~Ln~LL~emd 464 (794)
|-+..+....-.. ... .+...+.+..|+..+.
T Consensus 80 Dclt~~~~n~l~~--~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFA--DLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCC--ccccchhHHHHHHHHHHHHHH
Confidence 9998876543211 000 0223345566777665
No 365
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.83 E-value=0.0063 Score=60.99 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecchhH------HH---h----------------hc--cchHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFV------EL---Y----------------VG--MGASR 412 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is~se~~------~~---~----------------vG--~~~~~ 412 (794)
+.+...+.|.||+|+|||+|++.+++.... --+.+++.... .. | .. .+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 445567999999999999999999986421 11222221110 00 0 00 01123
Q ss_pred HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 413 vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
.+-.+..|-...|.++++||-.. +.+....+.+.+++.++. +. ..+|.+|+.++.
T Consensus 105 qrv~laral~~~p~~lllDEP~~-----------~LD~~~~~~l~~~l~~~~----~~-~tii~~sh~~~~ 159 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTV-----------GLDPITERQLLSLIFEVL----KD-KTLIWITHHLTG 159 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc-----------cCCHHHHHHHHHHHHHHc----CC-CEEEEEecCHHH
Confidence 34445666677899999999743 234445566667776653 12 345556665543
No 366
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.83 E-value=0.0043 Score=75.52 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=65.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHH---hcCCcEEEEecchhHH-H---hhc------------cchHHHHHHHHHHH
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAG---EAEVPFISCSASEFVE-L---YVG------------MGASRVRDLFARAK 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~---elgvpfi~is~se~~~-~---~vG------------~~~~~vr~lF~~Ar 421 (794)
|......++++||||||||+|+..++. ..|-+.++++..+-.. . -.| ..+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 455566799999999999999976644 3466777776554222 0 001 11111111222234
Q ss_pred hcCCEEEEEcccchhhhccC--CCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
...+.+|+||-+.++..... +.........+.+.++++|..|..+-...++.+|.|-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56799999999999885211 1100011123344456666655555445566666553
No 367
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.00095 Score=65.58 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=29.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
.++|++|-||||||+++..+|...+.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 46999999999999999999999999988764
No 368
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.81 E-value=0.0067 Score=61.08 Aligned_cols=92 Identities=12% Similarity=0.178 Sum_probs=55.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchH--------------------HHHHHHHHHHhcCCE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS--------------------RVRDLFARAKKEAPS 426 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~--------------------~vr~lF~~Ar~~aP~ 426 (794)
.+|+.||||+|||++|..++.+.+.+++++......+. +... .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998888777765432211 1111 223333221 12356
Q ss_pred EEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcC
Q 003806 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (794)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 465 (794)
+|+||-+..+....-.. ...+.....+..++..+..
T Consensus 79 ~VlID~Lt~~~~n~l~~---~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFE---EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred EEEehhHHHHHHHHhcc---cchHHHHHHHHHHHHHHHc
Confidence 89999998886432110 0012234456667776653
No 369
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.80 E-value=0.0048 Score=65.29 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=29.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
|+|+|+||+|||++|+.++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777777655543
No 370
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.80 E-value=0.018 Score=64.33 Aligned_cols=160 Identities=16% Similarity=0.233 Sum_probs=89.4
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH------Hh
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE------LY 405 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~------~~ 405 (794)
..|.+.+...+.|..++- .+ .-..|..+.|+|-.|||||.+.+++-++.+.|.+.++|-+... ..
T Consensus 6 ~~v~~Re~qi~~L~~Llg--~~-------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLG--NN-------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhC--CC-------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 346666776666655442 11 1246888999999999999999999999999999998866532 00
Q ss_pred ---h------c----cchHHHH---HHHHH--HHhcC--CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcC
Q 003806 406 ---V------G----MGASRVR---DLFAR--AKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (794)
Q Consensus 406 ---v------G----~~~~~vr---~lF~~--Ar~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 465 (794)
+ | .....+. .+|.+ +.... --.|++|.+|.+... + .-.++.++..-.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~---------~---a~ll~~l~~L~e- 143 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM---------D---AILLQCLFRLYE- 143 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc---------c---hHHHHHHHHHHH-
Confidence 0 0 1112222 23333 22222 347889999998521 1 123333333211
Q ss_pred CCCCCcEEEEEEcCCCCCCCccccCCCccc-eEEEeecCCHHhHHHHHHHH
Q 003806 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFD-RVVMVETPDKIGREAILKVH 515 (794)
Q Consensus 466 ~~~~~~VIVIaATN~pd~LDpALlRpGRFd-r~I~v~~Pd~~eR~eILk~~ 515 (794)
.-....+.+|...-.++ +.-+.+-|-++ ..+++|.|+.++...|+..-
T Consensus 144 l~~~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 144 LLNEPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HhCCCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11122333333322111 11122234444 35788899999988887653
No 371
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.80 E-value=0.0055 Score=67.41 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecchh------HHH--hhccch-------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VEL--YVGMGA------------- 410 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se~------~~~--~vG~~~------------- 410 (794)
|.....-++++||||||||.++-.+|..+ +...++++..+- .+. -.|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 45666678999999999999999998653 336777776541 110 001100
Q ss_pred ------HHHHHHHHHHHh-cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 411 ------SRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 411 ------~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
..+..+...... ..+++|+||=|-++....-.. .+...++.+.+++++..+..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 001112222223 467799999999886442110 1122334455666665554443345566665543
No 372
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.79 E-value=0.014 Score=72.20 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=84.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc--h-----hHH----Hhh----cc-----------c----hHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS--E-----FVE----LYV----GM-----------G----ASRVR 414 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~s--e-----~~~----~~v----G~-----------~----~~~vr 414 (794)
.+-++++||+|.|||+++...+...+ ++.-++.. + |.. ... +. + ...+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34599999999999999999987766 65544442 1 111 000 00 0 01122
Q ss_pred HHHHHHHh-cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC-ccccCCC
Q 003806 415 DLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD-PALRRPG 492 (794)
Q Consensus 415 ~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD-pALlRpG 492 (794)
.++..... ..|.+|+|||++.+. +....+.+..|+..+. .++.+|.++.....++ ..+...
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~-----------~~~~~~~l~~l~~~~~-----~~~~lv~~sR~~~~~~~~~l~~~- 173 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT-----------NPEIHEAMRFFLRHQP-----ENLTLVVLSRNLPPLGIANLRVR- 173 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC-----------ChHHHHHHHHHHHhCC-----CCeEEEEEeCCCCCCchHhHHhc-
Confidence 23333322 678999999999863 1223345555565432 3333333454321121 111111
Q ss_pred ccceEEEee----cCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHH
Q 003806 493 RFDRVVMVE----TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (794)
Q Consensus 493 RFdr~I~v~----~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~ 545 (794)
+..+.+. ..+.++-.+++...+. .++++ -+...+.+.|.|+ +.-|.
T Consensus 174 --~~~~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~-~~~~~l~~~t~Gw-p~~l~ 223 (903)
T PRK04841 174 --DQLLEIGSQQLAFDHQEAQQFFDQRLS---SPIEA-AESSRLCDDVEGW-ATALQ 223 (903)
T ss_pred --CcceecCHHhCCCCHHHHHHHHHhccC---CCCCH-HHHHHHHHHhCCh-HHHHH
Confidence 2344555 5577777777765543 23332 3567788899886 34344
No 373
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.79 E-value=0.0087 Score=69.51 Aligned_cols=44 Identities=30% Similarity=0.107 Sum_probs=34.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcc
Q 003806 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 535 ~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 578 (794)
+|...|.+.|+.+++-|...|..+-++.|+..|-+.|++-+...
T Consensus 602 rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA 645 (818)
T KOG0479|consen 602 RTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRFA 645 (818)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHHH
Confidence 44556788899999988888888888889998888888765543
No 374
>PRK06217 hypothetical protein; Validated
Probab=96.79 E-value=0.0012 Score=66.69 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
.|+|.|+||+|||++|++++..++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 375
>PRK06696 uridine kinase; Validated
Probab=96.79 E-value=0.0018 Score=67.43 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=34.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~ 402 (794)
..|.-|.+.|++|+|||+||+.|+..+ |.+++.++..+|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346679999999999999999999988 7888888887775
No 376
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.79 E-value=0.0041 Score=68.30 Aligned_cols=35 Identities=37% Similarity=0.657 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..++..|+|+|+||||||++++.+|..+|.||+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45677899999999999999999999999999943
No 377
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.79 E-value=0.0015 Score=72.43 Aligned_cols=72 Identities=25% Similarity=0.383 Sum_probs=48.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEe-cchhH--------HHh-----hccchHHHHHHHHHHHhcCCE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFV--------ELY-----VGMGASRVRDLFARAKKEAPS 426 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is-~se~~--------~~~-----vG~~~~~vr~lF~~Ar~~aP~ 426 (794)
+..+++|++||+|+|||+++++++....- .++.+. ..++. ..+ .+...-...++++.+....|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 34567999999999999999999987642 222221 11111 000 112223467888899999999
Q ss_pred EEEEcccc
Q 003806 427 IIFIDEID 434 (794)
Q Consensus 427 ILfIDEID 434 (794)
.|++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999984
No 378
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.77 E-value=0.0011 Score=66.49 Aligned_cols=34 Identities=35% Similarity=0.651 Sum_probs=28.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
|+|.||||+|||++|+.+|...|++++. .++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 8999999999999999999999877654 555544
No 379
>PRK13764 ATPase; Provisional
Probab=96.77 E-value=0.0019 Score=76.71 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=41.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC---CcEEEEe-cchhH-----HHhhccchHHHHHHHHHHHhcCCEEEEEcccch
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEFV-----ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elg---vpfi~is-~se~~-----~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 435 (794)
..++|++||||+||||++++++.++. ..+..+. ..++. ..|... ..........+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998764 2222221 11111 111100 01122333334567899999999743
No 380
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.77 E-value=0.0054 Score=67.60 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=63.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecch-hH-H----H--hhccc--------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-FV-E----L--YVGMG-------------- 409 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se-~~-~----~--~vG~~-------------- 409 (794)
|.....-+.|+||||+|||.|+..+|-.. +...++++..+ |. + . -.|..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 45556668899999999999999887422 34667776544 11 1 0 00110
Q ss_pred -hHHHHHHHH----HHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 003806 410 -ASRVRDLFA----RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (794)
Q Consensus 410 -~~~vr~lF~----~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (794)
.....+++. ......+.+|+||-|-++....-.+ .+.-.++.+.+++++..|..+....++.||.+
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 111112222 2234568899999999886532111 11223344456666665554444455556544
No 381
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.77 E-value=0.0073 Score=66.05 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=64.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecch-hH-----HH--hhccchH------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-FV-----EL--YVGMGAS------------ 411 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se-~~-----~~--~vG~~~~------------ 411 (794)
|.....-++++||||+|||+++-.+|..+ +-..++++..+ |. +. ..|....
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 45666668999999999999999998663 23677777655 11 10 0011100
Q ss_pred -------HHHHHHHHHHhc--CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 412 -------RVRDLFARAKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 412 -------~vr~lF~~Ar~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
.+..+.+..... .+++|+||-|-++....-.+ .+...++.+.+++++..+..+....++.|+.+.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 112222233333 37799999998875432110 112233445566665555444444556666554
No 382
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.77 E-value=0.0074 Score=61.19 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 003806 368 VLLVGLPGTGKTLLAKAVA 386 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA 386 (794)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 383
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.76 E-value=0.0098 Score=68.26 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecchh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF 401 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se~ 401 (794)
.++.++|+||+|+|||+++..+|..+ +..+..+++..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35679999999999999999887643 355666666554
No 384
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.75 E-value=0.0019 Score=70.81 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=49.6
Q ss_pred hhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEe-cchhH--H-----Hh-----hccchHHHHHHHHHHHhc
Q 003806 359 RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFV--E-----LY-----VGMGASRVRDLFARAKKE 423 (794)
Q Consensus 359 ~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is-~se~~--~-----~~-----vG~~~~~vr~lF~~Ar~~ 423 (794)
.+-.+...++++.||+|+|||++++++++.... ..+.+. ..++. . .. .+...-.+.+++..+...
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcC
Confidence 334556678999999999999999999987632 222221 11110 0 00 011123456788888889
Q ss_pred CCEEEEEcccc
Q 003806 424 APSIIFIDEID 434 (794)
Q Consensus 424 aP~ILfIDEID 434 (794)
.|.+|++||+-
T Consensus 218 ~pd~ii~gE~r 228 (308)
T TIGR02788 218 RPDRIILGELR 228 (308)
T ss_pred CCCeEEEeccC
Confidence 99999999984
No 385
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.75 E-value=0.0012 Score=63.80 Aligned_cols=28 Identities=36% Similarity=0.763 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
++|+|+||+|||++|+.++...+.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998877654
No 386
>PRK14530 adenylate kinase; Provisional
Probab=96.75 E-value=0.0014 Score=67.81 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
.++|.||||+|||++++.||..++++++.+ .+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHH
Confidence 599999999999999999999999876644 44443
No 387
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.75 E-value=0.0036 Score=75.95 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccC
Q 003806 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR 490 (794)
Q Consensus 411 ~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlR 490 (794)
.+-|-.+..|--..|.||++||.-+ ..+.+.++.+.+-|.++.. +..+|..|.|+..+ +
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTS-----------aLD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~ti-----~ 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATS-----------ALDPETEAIILQNLLQILQ-----GRTVIIIAHRLSTI-----R 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCccc-----------ccCHhHHHHHHHHHHHHhc-----CCeEEEEEccchHh-----h
Confidence 4445556666678899999999743 3456667777777777652 23455667776433 3
Q ss_pred CCccceEEEeec
Q 003806 491 PGRFDRVVMVET 502 (794)
Q Consensus 491 pGRFdr~I~v~~ 502 (794)
+.|+.+.++.
T Consensus 673 --~adrIiVl~~ 682 (709)
T COG2274 673 --SADRIIVLDQ 682 (709)
T ss_pred --hccEEEEccC
Confidence 5677777654
No 388
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.74 E-value=0.0015 Score=68.83 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.|..++|.||||+|||++|+.+|..+|++++++ .+++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdll 41 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNIL 41 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHH
Confidence 445699999999999999999999999877654 4444
No 389
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.74 E-value=0.0069 Score=60.49 Aligned_cols=105 Identities=24% Similarity=0.382 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCc--EEEEecchh--------HH----------Hhh-------ccchHHHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEF--------VE----------LYV-------GMGASRVRD 415 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvp--fi~is~se~--------~~----------~~v-------G~~~~~vr~ 415 (794)
.+..-+.|.||+|+|||+|.+.+++..... -+.+++.+. .. .+. =.+..+-+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 344568999999999999999999864210 111111110 00 000 011223444
Q ss_pred HHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 416 LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 416 lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
.+..|-...|.++++||--. +.+....+.+.+++..+.. .+..+|.+|+..+
T Consensus 106 ~la~al~~~p~~lllDEPt~-----------~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 106 GLARALYGNPRILVLDEPNS-----------HLDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHhcCCCEEEEECCcc-----------ccCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 56666778899999999643 3444555666666666531 2334555666554
No 390
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.72 E-value=0.0019 Score=71.34 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEe-cchhH---H---HhhccchHHHHHHHHHHHhcCCEEEEEc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFV---E---LYVGMGASRVRDLFARAKKEAPSIIFID 431 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is-~se~~---~---~~vG~~~~~vr~lF~~Ar~~aP~ILfID 431 (794)
..++++++||+|+|||+++++++.+. ...++.+. ..++. . .+.....-...++++.+....|+.|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34679999999999999999999863 12233221 11211 0 0111122346788889999999999999
Q ss_pred ccc
Q 003806 432 EID 434 (794)
Q Consensus 432 EID 434 (794)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 983
No 391
>PHA02774 E1; Provisional
Probab=96.72 E-value=0.0083 Score=70.54 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=26.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEE-Ee
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CS 397 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~-is 397 (794)
.+++|+||||||||++|.+|++.++-..+. ++
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 479999999999999999999998644433 44
No 392
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.71 E-value=0.0071 Score=60.17 Aligned_cols=103 Identities=29% Similarity=0.431 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------cEEEEecc-hh-----HHHh----hc--cchHHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------PFISCSAS-EF-----VELY----VG--MGASRVRDLFA 418 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv-----------pfi~is~s-e~-----~~~~----vG--~~~~~vr~lF~ 418 (794)
..+..-+.|.||.|+|||+|++.+++.... .+.++... .+ .+.. .. .+..+.+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 445566999999999999999999987521 11111110 00 1100 00 11233344566
Q ss_pred HHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 419 ~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
.|-...|.++++||-.. +.+....+.+.+++.++ +..+|.+|++++
T Consensus 104 ral~~~p~~lllDEPt~-----------~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 104 RLLLHKPKFVFLDEATS-----------ALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHcCCCEEEEECCcc-----------ccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 66677899999999743 23444455566666654 124555666553
No 393
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.69 E-value=0.0021 Score=71.10 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEe-cchhHH------HhhccchHHHHHHHHHHHhcCCEEEEEcc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVE------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is-~se~~~------~~vG~~~~~vr~lF~~Ar~~aP~ILfIDE 432 (794)
.+++|++|++|+|||+++++++.+. +..++.+. ..++.- .+.....-...++++.+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 23333332 112210 00111223467788888889999999999
Q ss_pred c
Q 003806 433 I 433 (794)
Q Consensus 433 I 433 (794)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 394
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.68 E-value=0.0019 Score=71.96 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=48.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEec-chhHH-------H-h----hccchHHHHHHHHHHHhcCCE
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFVE-------L-Y----VGMGASRVRDLFARAKKEAPS 426 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is~-se~~~-------~-~----vG~~~~~vr~lF~~Ar~~aP~ 426 (794)
.+..+++|+.||+|+|||++++++++.... .++.+.- .++.- . + .+.+.-...++++.+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 445678999999999999999999987632 2222211 11110 0 0 112223466788888899999
Q ss_pred EEEEcccc
Q 003806 427 IIFIDEID 434 (794)
Q Consensus 427 ILfIDEID 434 (794)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999983
No 395
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.68 E-value=0.0049 Score=66.85 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc----C-CcEEEEecchh
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASEF 401 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el----g-vpfi~is~se~ 401 (794)
..++.++|+||+|+|||+++..+|..+ | ..+..+++..+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 346679999999999999999998755 3 56666666553
No 396
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.68 E-value=0.0053 Score=60.16 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=30.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 7899999999999999999987 66777777665544
No 397
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.68 E-value=0.0051 Score=68.67 Aligned_cols=115 Identities=21% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecch-h-----HHH--hhccc--------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-F-----VEL--YVGMG-------------- 409 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se-~-----~~~--~vG~~-------------- 409 (794)
|+....-+.|+||||||||.|+..+|-.. +...++++..+ | .+. -.|..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45555668899999999999999887432 24566776543 1 110 00111
Q ss_pred -hH----HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 003806 410 -AS----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (794)
Q Consensus 410 -~~----~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (794)
.. .+..+-.......+++|+||-|-++.+..-.+ .+.-.++.+.+++++..|..+....++.||.+
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 01 11222222334568899999999886542111 11223445556666666544433445555544
No 398
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.68 E-value=0.0047 Score=66.43 Aligned_cols=93 Identities=20% Similarity=0.298 Sum_probs=55.6
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---CcEEEEe-cchhHH-
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEFVE- 403 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg---vpfi~is-~se~~~- 403 (794)
.+++++.-.++..+.|++++. .....+++.||+|+|||++++++..+.. ..++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 457776544454444444331 1122489999999999999999977653 2344442 111110
Q ss_pred ----Hhh-ccchHHHHHHHHHHHhcCCEEEEEcccc
Q 003806 404 ----LYV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (794)
Q Consensus 404 ----~~v-G~~~~~vr~lF~~Ar~~aP~ILfIDEID 434 (794)
..+ ........+++..+....|++|+|+|+.
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 000 1111235667777788899999999984
No 399
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.67 E-value=0.0083 Score=61.51 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~ 387 (794)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4599999999999999999983
No 400
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.66 E-value=0.024 Score=58.45 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpf 393 (794)
|.-+++.|+||+|||++|+.+|.+++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999998765
No 401
>PRK06547 hypothetical protein; Provisional
Probab=96.66 E-value=0.0019 Score=65.16 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..+.-|++.|++|+|||++|+.+++.++++++++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 4566789999999999999999999999887754
No 402
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.65 E-value=0.022 Score=60.63 Aligned_cols=133 Identities=16% Similarity=0.249 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCC---cEEEEecch--hHHHhh-----cc--chH-------H----HHHHHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSASE--FVELYV-----GM--GAS-------R----VRDLFAR 419 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgv---pfi~is~se--~~~~~v-----G~--~~~-------~----vr~lF~~ 419 (794)
..|-.+++.|++|||||++++.+.....- +++.++... ....|+ .. ... + +.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34556999999999999999999876532 222222111 111111 00 000 1 1111111
Q ss_pred HHh---cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccce
Q 003806 420 AKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (794)
Q Consensus 420 Ar~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr 496 (794)
... ..+++|++|++-. .....+.+.+++..- ..-++-+|..+...-.||+.++. -.+.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~-------------~~~k~~~l~~~~~~g----RH~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD-------------KKLKSKILRQFFNNG----RHYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred hcccCCCCCeEEEEeCCCC-------------chhhhHHHHHHHhcc----cccceEEEEEeeecccCCHHHhh--cceE
Confidence 111 3368999999732 112234566666532 23457777788777889999865 5666
Q ss_pred EEEeecCCHHhHHHHHHHH
Q 003806 497 VVMVETPDKIGREAILKVH 515 (794)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~ 515 (794)
.+.+. .+..+.+-|++.+
T Consensus 152 ~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEEec-CcHHHHHHHHHhc
Confidence 66553 4555555444443
No 403
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.65 E-value=0.013 Score=59.52 Aligned_cols=105 Identities=19% Similarity=0.143 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCc--EEEEecchh--HHHhh-ccchHHHHHHHHHHHhcCCEEEEEcccchhh
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEF--VELYV-GMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvp--fi~is~se~--~~~~v-G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 437 (794)
.+..-+.|.||.|+|||+|++.+++..... -+.+++..+ ..... =.+..+.+-.+..|-...|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts-- 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA-- 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc--
Confidence 345568899999999999999999864210 111211100 00000 11122344456666677899999999643
Q ss_pred hccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
+.+....+.+..++.++. .+.+..+|.+|...
T Consensus 101 ---------~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~ 132 (177)
T cd03222 101 ---------YLDIEQRLNAARAIRRLS---EEGKKTALVVEHDL 132 (177)
T ss_pred ---------cCCHHHHHHHHHHHHHHH---HcCCCEEEEEECCH
Confidence 233444445555555542 11213444556544
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.65 E-value=0.014 Score=64.55 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
..|.-++|+||+|+|||+++..+|..+ +..+..+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456779999999999999999999865 4445545543
No 405
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.64 E-value=0.0015 Score=64.26 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
++|+||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987765 44444
No 406
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.64 E-value=0.0022 Score=64.41 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (794)
++.|+|+||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999887654
No 407
>PTZ00035 Rad51 protein; Provisional
Probab=96.64 E-value=0.0079 Score=66.98 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CcEEEEecchh------HHHh--hccc--------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASEF------VELY--VGMG-------------- 409 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~se~------~~~~--vG~~-------------- 409 (794)
|.....-+.|+||||+|||+|+..++.... -..++++..+- .... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 555666688999999999999999975432 34556654431 1100 0000
Q ss_pred -hH----HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 003806 410 -AS----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (794)
Q Consensus 410 -~~----~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (794)
.. .+..+........+.+|+||-|-++.+..-.+ .+...++.+.+.+++..+..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG--RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 01 11112222234567899999999976542110 11223455566766666654444455666544
No 408
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.64 E-value=0.0019 Score=64.01 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=28.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
+.++|+|+||+|||++++.+|..+|.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 4589999999999999999999999998754
No 409
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0027 Score=64.43 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.++|.||||+||||+|+.||+. .++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 555566655544
No 410
>PRK13695 putative NTPase; Provisional
Probab=96.61 E-value=0.018 Score=57.44 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.++|+|+||+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999988764
No 411
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.61 E-value=0.0041 Score=70.11 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=45.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC-----CcEEEEecc-hhH-----------HHhhccchHHHHHHHHHHHhcCCEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS-EFV-----------ELYVGMGASRVRDLFARAKKEAPSIIF 429 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elg-----vpfi~is~s-e~~-----------~~~vG~~~~~vr~lF~~Ar~~aP~ILf 429 (794)
.+|++||+|+|||+++++++.+.. ..++.+.-. ++. ..-+|.......+.+..+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999987662 334444211 211 111222223455677778788999999
Q ss_pred Ecccc
Q 003806 430 IDEID 434 (794)
Q Consensus 430 IDEID 434 (794)
++|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.59 E-value=0.016 Score=67.58 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh----cCCcEEEEecch
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASE 400 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e----lgvpfi~is~se 400 (794)
|..+.+.+|++||||||||+||..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 5666778999999999999999988543 367888887553
No 413
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.59 E-value=0.0059 Score=66.04 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
++-++|.||||||||++|+.++.++. .++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 45688999999999999999999983 3455566666544
No 414
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.57 E-value=0.012 Score=60.21 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.5
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 003806 366 RGVLLVGLPGTGKTLLAKAVA 386 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA 386 (794)
+.++|+||.|+|||+|.|.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 415
>PRK14527 adenylate kinase; Provisional
Probab=96.54 E-value=0.002 Score=65.36 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
+.|.-++++||||+|||++|+.+|...+.+.++ ..++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is--~gd~~ 41 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS--TGDIL 41 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC--ccHHH
Confidence 456779999999999999999999999876544 34444
No 416
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.52 E-value=0.0023 Score=63.91 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
-+++.||||+|||++++.++.++|.+.+ +.+++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~--~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL--STGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eHHHHH
Confidence 4889999999999999999999886654 444443
No 417
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.52 E-value=0.007 Score=62.50 Aligned_cols=119 Identities=29% Similarity=0.449 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHH
Q 003806 341 KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 420 (794)
Q Consensus 341 K~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A 420 (794)
+..|..+|....+| |.+....++|.|+.|+|||++.+.|+.+ ++.-+.... ........+-.
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~~l~~-- 95 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLEQLQG-- 95 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHHHHHH--
Confidence 44445555444443 4555667889999999999999999666 221111110 01111111111
Q ss_pred HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh-hcCCCC---------CCcEEEEEEcCCCCCC-Ccccc
Q 003806 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDS---------NSAVIVLGATNRSDVL-DPALR 489 (794)
Q Consensus 421 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-mdg~~~---------~~~VIVIaATN~pd~L-DpALl 489 (794)
. -|+.|||++.+.+.. ...+-.+++. .+.+.. ....++|||||..+.| |+.=-
T Consensus 96 -~---~iveldEl~~~~k~~------------~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGn 159 (198)
T PF05272_consen 96 -K---WIVELDELDGLSKKD------------VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGN 159 (198)
T ss_pred -h---HheeHHHHhhcchhh------------HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCC
Confidence 1 289999999875221 1223333333 222111 2357899999998766 44444
Q ss_pred CCCccc
Q 003806 490 RPGRFD 495 (794)
Q Consensus 490 RpGRFd 495 (794)
| ||=
T Consensus 160 R--Rf~ 163 (198)
T PF05272_consen 160 R--RFW 163 (198)
T ss_pred e--EEE
Confidence 4 653
No 418
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.50 E-value=0.0053 Score=68.27 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=53.8
Q ss_pred cc-cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-CcEEEEecchhHHHhhcc
Q 003806 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSASEFVELYVGM 408 (794)
Q Consensus 331 f~-DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg-vpfi~is~se~~~~~vG~ 408 (794)
|+ ++.|++++.+ ++|++++.... .....-+-++|.||+|+|||+|++.+..-+. .+++.+..+-+.+.-...
T Consensus 59 f~~~~~G~~~~i~---~lV~~fk~AA~---g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L 132 (358)
T PF08298_consen 59 FEDEFYGMEETIE---RLVNYFKSAAQ---GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHL 132 (358)
T ss_pred ccccccCcHHHHH---HHHHHHHHHHh---ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhh
Confidence 55 8999999766 55556654322 1122345688999999999999999987552 366666555444433344
Q ss_pred chHHHHHHHHH
Q 003806 409 GASRVRDLFAR 419 (794)
Q Consensus 409 ~~~~vr~lF~~ 419 (794)
-+..+|+.|..
T Consensus 133 ~P~~~r~~~~~ 143 (358)
T PF08298_consen 133 FPKELRREFED 143 (358)
T ss_pred CCHhHHHHHHH
Confidence 45666666654
No 419
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.50 E-value=0.0049 Score=63.11 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc-CCcEEEEecchhHHHh
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELY 405 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el-gvpfi~is~se~~~~~ 405 (794)
..|.-+++.|+||+|||+++..+..++ +-.++.++..+|...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 568889999999999999999999988 7788889988876543
No 420
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0021 Score=64.03 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
+-+.||||||||++|+.+|.++|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999976
No 421
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0097 Score=59.43 Aligned_cols=105 Identities=23% Similarity=0.275 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecch-------hH----------HHhhc---------cchHHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-------FV----------ELYVG---------MGASRVR 414 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is~se-------~~----------~~~vG---------~~~~~vr 414 (794)
.+...+.|.||+|+|||+|++.+++.... --+.+++.. +. ..+.+ .+..+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qr 103 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQR 103 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHH
Confidence 44456999999999999999999986411 001111100 00 00111 1122334
Q ss_pred HHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 415 ~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
-.+..|-...|.|+++||-.. +.+......+.+++..+.. + +..+|.+|+.++
T Consensus 104 v~laral~~~p~illlDEPt~-----------~LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 104 LALAQALLHDPELLILDEPTS-----------GLDPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCcc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 456666678899999999754 2344445566666666531 2 234555666543
No 422
>PRK14528 adenylate kinase; Provisional
Probab=96.49 E-value=0.0025 Score=64.81 Aligned_cols=35 Identities=29% Similarity=0.600 Sum_probs=29.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
+.+++.||||+|||++|+.+|...|++.+++ .++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~--~~~l 36 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST--GDIL 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC--CHHH
Confidence 3589999999999999999999999887654 4443
No 423
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0044 Score=62.43 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.++++|.||||||++++.++ ++|.++++++ +|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~ 34 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELA 34 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHH
Confidence 38999999999999999999 9998887765 554
No 424
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.47 E-value=0.0078 Score=60.07 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC---CcEEEEecchhHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVE 403 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg---vpfi~is~se~~~ 403 (794)
..|.-++|.|+||+|||++|+.++..+. ...+.++...+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 4566799999999999999999998875 3355566655544
No 425
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.46 E-value=0.024 Score=66.35 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=64.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhHHH--------------hhc--c------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL--------------YVG--M------------ 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~~~--------------~vG--~------------ 408 (794)
|.++..-+||+|+||+|||+|+..++.+. |-++++++..+-.+. +.. .
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 45566779999999999999999876432 677777776543321 100 0
Q ss_pred ----c----hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 409 ----G----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 409 ----~----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+ ...+..+-+......|..|+||-+..+...-+ ........+..++..+. ..++.+|.+++.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d------~~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~ 176 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFS------NEAVVRRELRRLFAWLK----QKGVTAVITGER 176 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhcc------CHHHHHHHHHHHHHHHH----hCCCEEEEEECC
Confidence 0 01122233334456788999999988643211 11222445666666554 234555666654
Q ss_pred CC
Q 003806 481 SD 482 (794)
Q Consensus 481 pd 482 (794)
..
T Consensus 177 ~~ 178 (509)
T PRK09302 177 GD 178 (509)
T ss_pred cc
Confidence 43
No 426
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.46 E-value=0.0061 Score=67.51 Aligned_cols=70 Identities=29% Similarity=0.301 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccc------------hHHHHHHHHHHHhcCCEEEEEcc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG------------ASRVRDLFARAKKEAPSIIFIDE 432 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~------------~~~vr~lF~~Ar~~aP~ILfIDE 432 (794)
.+.++|.|+||||||+|++.++...+.+++.-.+.++.....+.. ...... ...+...++.|||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~ 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC
Confidence 346999999999999999999999999997776666654332110 111112 2333344567999995
Q ss_pred cchh
Q 003806 433 IDAV 436 (794)
Q Consensus 433 IDaL 436 (794)
+.+
T Consensus 241 -~~~ 243 (325)
T TIGR01526 241 -DFI 243 (325)
T ss_pred -ChH
Confidence 443
No 427
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.44 E-value=0.019 Score=57.12 Aligned_cols=34 Identities=35% Similarity=0.446 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~ 401 (794)
++++||||+|||+++..+|..+ +..+..+++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 7899999999999999998764 667777776543
No 428
>PRK04040 adenylate kinase; Provisional
Probab=96.44 E-value=0.0028 Score=64.79 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc--CCcEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA--EVPFIS 395 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el--gvpfi~ 395 (794)
|+-++++|+||||||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 5679999999999999999999998 666543
No 429
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.44 E-value=0.015 Score=63.37 Aligned_cols=114 Identities=22% Similarity=0.418 Sum_probs=70.7
Q ss_pred CCCe-EEEEcCCCChHHHHHHHHHHhcCC----cEEEEe---------cchhH-HHhhccchHHHHHHHHHHHhcCCEEE
Q 003806 364 PPRG-VLLVGLPGTGKTLLAKAVAGEAEV----PFISCS---------ASEFV-ELYVGMGASRVRDLFARAKKEAPSII 428 (794)
Q Consensus 364 ~pkg-VLL~GPPGTGKT~LAkALA~elgv----pfi~is---------~se~~-~~~vG~~~~~vr~lF~~Ar~~aP~IL 428 (794)
.|+| ||++||.|+|||+..-++-.+.+. +.+.+. -..++ ..-+|..-......++.|-...|+||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3455 777899999999999888877652 333331 11111 23456555666677777888899999
Q ss_pred EEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHH
Q 003806 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKI 506 (794)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~ 506 (794)
++-|+-.+ ++++.-|..-+ .+-+|++|-...+ |.. -.||.|.+-++..+
T Consensus 203 lvGEmRD~-----------------ETi~~ALtAAE-----TGHLV~~TLHT~s----A~~---ti~RiidvFp~~ek 251 (353)
T COG2805 203 LVGEMRDL-----------------ETIRLALTAAE-----TGHLVFGTLHTNS----AAK---TIDRIIDVFPAEEK 251 (353)
T ss_pred EEeccccH-----------------HHHHHHHHHHh-----cCCEEEEeccccc----HHH---HHHHHHHhCChhhh
Confidence 99998432 45555565544 4557877754432 222 23556666665543
No 430
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.43 E-value=0.0093 Score=65.85 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=63.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CcEEEEecchh------HHHh--hccc--------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASEF------VELY--VGMG-------------- 409 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~se~------~~~~--vG~~-------------- 409 (794)
|..+..-+.++||||+|||+|+..+|..+. ...++++..+- .... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 456666789999999999999999876321 25567766541 1100 0111
Q ss_pred -hHH----HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 410 -ASR----VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 410 -~~~----vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
... +..+........+++|+||-|-++....-.+ .+....+...+.+++..+..+....++.|+.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~--~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG--RGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC--cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 111 1111222234568899999999986432111 011123334456666666544444555555543
No 431
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.43 E-value=0.0046 Score=64.34 Aligned_cols=96 Identities=27% Similarity=0.400 Sum_probs=49.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCcc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~ 445 (794)
-++|+||+|||||.+|-++|+..|.|++..+.-.... .-+|.+ +....-++ ..+ =+|+||-.---
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~el~----~~~-RiyL~~r~l~~-------- 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPSELK----GTR-RIYLDDRPLSD-------- 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGGT----T-E-EEES----GGG--------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHHHHc----ccc-eeeeccccccC--------
Confidence 3789999999999999999999999999988755443 223322 11111111 112 37777643211
Q ss_pred ccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 446 ~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
+.-..++....|+..++......++|+=+-+
T Consensus 69 --G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGS 99 (233)
T PF01745_consen 69 --GIINAEEAHERLISEVNSYSAHGGLILEGGS 99 (233)
T ss_dssp ---S--HHHHHHHHHHHHHTTTTSSEEEEEE--
T ss_pred --CCcCHHHHHHHHHHHHHhccccCceEEeCch
Confidence 1112234556677777777765556655544
No 432
>PRK02496 adk adenylate kinase; Provisional
Probab=96.42 E-value=0.003 Score=63.52 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
-+++.||||+|||++|+.+|..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776553
No 433
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.011 Score=70.44 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
.++|.+.+-|+||+|.|||++|.-+-+-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567777999999999999999988763
No 434
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.40 E-value=0.0028 Score=65.38 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
|++.||||+|||++|+.+|...|++.++ .++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999999877655 44444
No 435
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.38 E-value=0.011 Score=66.10 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=66.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecch------hHHHh--hcc---------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGM--------------- 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se------~~~~~--vG~--------------- 408 (794)
|.....-++++|+||+|||.|+..+|-.. +.+.++++..+ +.+.. .+.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 45555668899999999999999887432 22577777655 11110 010
Q ss_pred chHHHHHHH----HHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 409 GASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 409 ~~~~vr~lF----~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
....+..++ .......+.+|+||-|-++....-.+ .+...++.+.+.+++..+..+....++.||.+.
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~--~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG--RGELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 011111222 22344578899999999987542111 112234455677777776655545566666554
No 436
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.38 E-value=0.026 Score=64.72 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=46.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH-------H--------hhc----cc-hHHHHHHHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------L--------YVG----MG-ASRVRDLFAR 419 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~-------~--------~vG----~~-~~~vr~lF~~ 419 (794)
.+|.-++|+||+|+||||++..+|..+ |..+..+++..+.. . +.. .. ....++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 456779999999999999999998765 66666666654321 0 010 01 1223345566
Q ss_pred HHhcCCEEEEEcccc
Q 003806 420 AKKEAPSIIFIDEID 434 (794)
Q Consensus 420 Ar~~aP~ILfIDEID 434 (794)
++.....+||||=..
T Consensus 178 ~~~~~~DvViIDTaG 192 (429)
T TIGR01425 178 FKKENFDIIIVDTSG 192 (429)
T ss_pred HHhCCCCEEEEECCC
Confidence 665556688888653
No 437
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.37 E-value=0.0094 Score=66.50 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
-+++.|.||||||.||-.+|.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37888999999999999999987
No 438
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.37 E-value=0.011 Score=59.54 Aligned_cols=28 Identities=39% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+...+.|.||+|+|||+|.+.+++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455568999999999999999999864
No 439
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0062 Score=63.00 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el 389 (794)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 440
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.36 E-value=0.035 Score=56.49 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+...+.|.||+|+|||+|++.+++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999864
No 441
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.35 E-value=0.017 Score=65.47 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
..-++|+||||+|||+|++.+++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 33499999999999999999998753
No 442
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.35 E-value=0.018 Score=58.74 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+...+.|.||+|+|||+|.+.+++..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455679999999999999999999976
No 443
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.028 Score=57.19 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=22.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
+.+...+.|.||+|+|||+|++.+++.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344556899999999999999999974
No 444
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.32 E-value=0.016 Score=57.46 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVA 386 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA 386 (794)
++..+++||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999984
No 445
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.31 E-value=0.0026 Score=68.46 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=49.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHH------hcCCcEEEEecchhHHHh-hccchHHHHHHHHHHH--------hcCC
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAG------EAEVPFISCSASEFVELY-VGMGASRVRDLFARAK--------KEAP 425 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~------elgvpfi~is~se~~~~~-vG~~~~~vr~lF~~Ar--------~~aP 425 (794)
..+....+||.||.|.||+.||+.+.. .+.-+|+.++|..+...- +..--..++..|.-|+ ...-
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 344455699999999999999999854 346799999998774310 0000011222222221 1223
Q ss_pred EEEEEcccchhhhc
Q 003806 426 SIIFIDEIDAVAKS 439 (794)
Q Consensus 426 ~ILfIDEIDaL~~~ 439 (794)
.++|+|||..++.+
T Consensus 284 gmlfldeigelgad 297 (531)
T COG4650 284 GMLFLDEIGELGAD 297 (531)
T ss_pred ceEehHhhhhcCcc
Confidence 59999999988644
No 446
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.31 E-value=0.0082 Score=51.18 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=23.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhc-CCcEEEEe
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEA-EVPFISCS 397 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el-gvpfi~is 397 (794)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999985 34444443
No 447
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.30 E-value=0.0035 Score=64.87 Aligned_cols=34 Identities=35% Similarity=0.645 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
|+++||||+|||++|+.+|..++++.++ ..++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 8999999999999999999999976665 444443
No 448
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.30 E-value=0.0093 Score=67.89 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
..+.|.|+|++|||||+|+++||...|.+++.--+.++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 3567999999999999999999999998876654444443
No 449
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.28 E-value=0.018 Score=57.84 Aligned_cols=107 Identities=25% Similarity=0.331 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecchh--------HHH--h-------hc------------cch
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEF--------VEL--Y-------VG------------MGA 410 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is~se~--------~~~--~-------vG------------~~~ 410 (794)
..+..-+.|.||+|+|||+|++.+++.... --+.+++.+. ... | +| .+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 345566999999999999999999986521 0122222111 000 0 00 011
Q ss_pred HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 411 ~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
.+-+-.+..|-...|.++++||--. +.+....+.+.+++.++.. +.+..+|.+|+.++
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~-----------~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~ 159 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTS-----------HLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcc-----------CCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 2233345555667899999999643 3344555666677766641 11335555666654
No 450
>PLN02674 adenylate kinase
Probab=96.28 E-value=0.0051 Score=65.50 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
+++..++|.||||+|||++|+.+|...|++. ++..+++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 4456799999999999999999999998655 455555543
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.28 E-value=0.018 Score=60.52 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 003806 368 VLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~e 388 (794)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999753
No 452
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.27 E-value=0.0089 Score=60.07 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=41.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-------------CCcEEEEecchhH----HH---------------hhc-------
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA-------------EVPFISCSASEFV----EL---------------YVG------- 407 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el-------------gvpfi~is~se~~----~~---------------~vG------- 407 (794)
-++++||||+|||+++..+|..+ +.++++++..+-. .. +..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48999999999999999997643 2366667544221 10 000
Q ss_pred ----------cchHHHHHHHHHHHh-cCCEEEEEcccchhhhc
Q 003806 408 ----------MGASRVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (794)
Q Consensus 408 ----------~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~ 439 (794)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011223455555666 56889999999998754
No 453
>PLN02199 shikimate kinase
Probab=96.27 E-value=0.021 Score=62.34 Aligned_cols=33 Identities=33% Similarity=0.607 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
.++|+|+|.+|+|||++++.+|+.+|.+|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 457999999999999999999999999998754
No 454
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0093 Score=59.84 Aligned_cols=106 Identities=24% Similarity=0.349 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCc--EEEEecch----------hHH----------Hhhc-----------cc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASE----------FVE----------LYVG-----------MG 409 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvp--fi~is~se----------~~~----------~~vG-----------~~ 409 (794)
.+...+.|.||.|+|||+|++++++..... -+.+++.+ +.. .+.+ .+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 344568899999999999999999864210 01111100 000 0000 11
Q ss_pred hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 410 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
..+-+-.+..|-...|.++++||-.. +.+......+.+++.++.. ..+..+|.+|+.++
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~-----------~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~ 162 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTS-----------ALDPITRREVRALLKSLQA---QLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcc-----------cCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 12334446666677899999999643 3445555666666666542 11234555565543
No 455
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.24 E-value=0.014 Score=69.29 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
-+++..-+.|+||+|+|||||++.+++..
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566679999999999999999999865
No 456
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.24 E-value=0.029 Score=58.44 Aligned_cols=125 Identities=26% Similarity=0.324 Sum_probs=73.7
Q ss_pred ChhHHhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc----hhHH-----------H--------
Q 003806 353 SPDKYIRLGARPPRG--VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EFVE-----------L-------- 404 (794)
Q Consensus 353 ~p~~~~~lg~~~pkg--VLL~GPPGTGKT~LAkALA~el---gvpfi~is~s----e~~~-----------~-------- 404 (794)
+.+.-.++|.-.|-| +++.|+.|||||.|.+.++--+ +....+++.. +|.. .
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~ 93 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLF 93 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEE
Confidence 334455677666655 7888999999999999997532 3444444322 1111 0
Q ss_pred ------hh----ccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 003806 405 ------YV----GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (794)
Q Consensus 405 ------~v----G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (794)
.+ ....+.+..+.+..+.....||+||-+..+.... .++.++++++.+..+....++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 94 FPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred EEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHHhCCCEEE
Confidence 00 1112333444444455566799999999876331 12345556666665665666555
Q ss_pred EEEcCCCCCCCccccC
Q 003806 475 LGATNRSDVLDPALRR 490 (794)
Q Consensus 475 IaATN~pd~LDpALlR 490 (794)
+ |-+|+.++++++-
T Consensus 163 l--Tvhp~~l~e~~~~ 176 (235)
T COG2874 163 L--TVHPSALDEDVLT 176 (235)
T ss_pred E--EeChhhcCHHHHH
Confidence 4 4457888877764
No 457
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.24 E-value=0.042 Score=56.49 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+...+.|.||+|+|||+|++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455569999999999999999999863
No 458
>PRK01184 hypothetical protein; Provisional
Probab=96.22 E-value=0.0045 Score=62.17 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
-++|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999888665
No 459
>PRK13808 adenylate kinase; Provisional
Probab=96.21 E-value=0.019 Score=63.78 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
|+|.||||+|||++++.||..+|++.++ ..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec--ccHHH
Confidence 8999999999999999999999876554 45554
No 460
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.20 E-value=0.092 Score=56.85 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
...|+-++|+||+|+|||+++..+|..+ |..+..+++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457789999999999999999998765 5555555554
No 461
>PRK04182 cytidylate kinase; Provisional
Probab=96.20 E-value=0.0044 Score=61.29 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
.|+|.|+||+|||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38899999999999999999999998875
No 462
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.17 E-value=0.01 Score=68.44 Aligned_cols=92 Identities=21% Similarity=0.323 Sum_probs=59.4
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCChHHHHHHHHHHhcCCcEE-EEecchhHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSASEFVEL 404 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkALA~elgvpfi-~is~se~~~~ 404 (794)
...+|+++.......+.+.+++ ..|.| +|++||.|+|||+...++.++++-+.. .++..+=++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~--------------~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLL--------------NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHH--------------hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 3567788877777766666654 24566 567799999999999999998865543 2222222221
Q ss_pred ------------hhccchHHHHHHHHHHHhcCCEEEEEcccch
Q 003806 405 ------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (794)
Q Consensus 405 ------------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 435 (794)
-.|.+ ....++..-.+.|+||.+.||-.
T Consensus 299 ~~~gI~Q~qVN~k~glt---fa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLT---FARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCC---HHHHHHHHhccCCCeEEEeccCC
Confidence 11211 22344445567899999999953
No 463
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.17 E-value=0.0033 Score=61.25 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=28.0
Q ss_pred EEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhh
Q 003806 370 LVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (794)
Q Consensus 370 L~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~v 406 (794)
|.||||+|||++|+.||.+.|. ..++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999975 4566666665433
No 464
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.16 E-value=0.029 Score=54.69 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=22.1
Q ss_pred CeEEEEcCCCChHHH-HHHHHHHhcC----CcEEEEec
Q 003806 366 RGVLLVGLPGTGKTL-LAKAVAGEAE----VPFISCSA 398 (794)
Q Consensus 366 kgVLL~GPPGTGKT~-LAkALA~elg----vpfi~is~ 398 (794)
+.+++.||+|||||. ++..+..... .+++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 579999999999999 4444444332 33555544
No 465
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.16 E-value=0.0043 Score=61.11 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
|.|+|+||||||+|+++|+.. |.+++.-.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999998 8887744444444
No 466
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.15 E-value=0.0037 Score=57.95 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el 389 (794)
|+|.|+||+|||++|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 467
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.14 E-value=0.024 Score=61.21 Aligned_cols=171 Identities=17% Similarity=0.213 Sum_probs=93.3
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHH
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~ 412 (794)
+++-.+++.+.+-.+..-+..|. .++||+|.+|+||++++|..|--++..++.+..+.-.+ ...-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 56677888888888887776542 36999999999999999988888899998887543211 1112345
Q ss_pred HHHHHHHHH-hcCCEEEEEcccchhhh----------ccCCCccccchHHHHHHHHHHHHhhcC--CCC-----------
Q 003806 413 VRDLFARAK-KEAPSIIFIDEIDAVAK----------SRDGRFRIVSNDEREQTLNQLLTEMDG--FDS----------- 468 (794)
Q Consensus 413 vr~lF~~Ar-~~aP~ILfIDEIDaL~~----------~r~~~~~~~~~~e~~~~Ln~LL~emdg--~~~----------- 468 (794)
++.++.+|. ++.|.+++|+|-+-.-. ..+.-..--..+|.+..+..+-..... ...
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~ 156 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIE 156 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHH
Confidence 666666665 55688888887442210 001000112345666666666554321 111
Q ss_pred --CCcEEE-EEEcCCCCCC------CccccCCCccceEEEeecCCHHhHHHHHHHHHhc
Q 003806 469 --NSAVIV-LGATNRSDVL------DPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (794)
Q Consensus 469 --~~~VIV-IaATN~pd~L------DpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (794)
+.+.-| ++-+...+.+ -|+|.. ...+..+...+.+....+-..++..
T Consensus 157 rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~---~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 157 RVRKNLHIVLCMSPVGPNFRDRCRSFPALVN---CCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHCCCEEEEEEESTTTTCCCHHHHHHCCHHH---HSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHhheeEEEEECCCCchHHHHHHhCcchhc---ccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 122222 2222222223 255554 2345667777778888877777654
No 468
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.022 Score=69.42 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.+..++|+||.|+||||++..+|..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 35668999999999999999999754
No 469
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.09 E-value=0.021 Score=67.76 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++...+.|+||.|+|||||++.+++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4455669999999999999999999865
No 470
>PF13245 AAA_19: Part of AAA domain
Probab=96.09 E-value=0.0084 Score=52.51 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHH-HHHHHHHHhc------CCcEEEEec
Q 003806 367 GVLLVGLPGTGKT-LLAKAVAGEA------EVPFISCSA 398 (794)
Q Consensus 367 gVLL~GPPGTGKT-~LAkALA~el------gvpfi~is~ 398 (794)
-+++.|||||||| ++++.++... +..+..++.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 3556999999999 5555555544 445666554
No 471
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.07 E-value=0.0055 Score=60.19 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
|.++|++|+|||++|+.+|+.+|.|++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997653
No 472
>PF13479 AAA_24: AAA domain
Probab=96.07 E-value=0.0093 Score=61.91 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=40.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcE-EEEecch--hHH-----HhhccchHHHHHHHHHHH--hcCCEEEEEcccc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASE--FVE-----LYVGMGASRVRDLFARAK--KEAPSIIFIDEID 434 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpf-i~is~se--~~~-----~~vG~~~~~vr~lF~~Ar--~~aP~ILfIDEID 434 (794)
+-.+|||||||+|||++|..+ +-|+ +.+..+. +.. .+.=.+...+.+.+..+. ...-..|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 446999999999999999987 3333 2333221 100 001113445556555432 2344599999988
Q ss_pred hh
Q 003806 435 AV 436 (794)
Q Consensus 435 aL 436 (794)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 473
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.04 E-value=0.046 Score=64.03 Aligned_cols=107 Identities=24% Similarity=0.205 Sum_probs=62.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh------hcc----------------------c
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM----------------------G 409 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~------vG~----------------------~ 409 (794)
|......++++||||+|||+|+..++.+. |-+.++++..+-.+.+ .|. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 45566679999999999999999987653 6777777654322110 000 0
Q ss_pred hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 410 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
...+..+.+......|.+|+||-+..+.... ......+.+..|...+. +.++.+|.+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~~~~~~~~l~~l~~~~k----~~~~t~l~t~ 406 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG-------SLNEFRQFVIRLTDYLK----SEEITGLFTN 406 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------CHHHHHHHHHHHHHHHH----hCCCeEEEEe
Confidence 1122233334445678899999998886421 12233444555555443 2345555554
No 474
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.03 E-value=0.025 Score=71.40 Aligned_cols=179 Identities=21% Similarity=0.247 Sum_probs=97.9
Q ss_pred CCCCCeEEEEcCCCChHHHHH-HHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcC---------C------
Q 003806 362 ARPPRGVLLVGLPGTGKTLLA-KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA---------P------ 425 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LA-kALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~a---------P------ 425 (794)
...-++++++||||+|||+|. -++-.+.-..++.++-+.-. .++..+ ..+++-...- |
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~l-s~Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKL-SVLERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHH-HHHHhhceeeccCCeEEEccCcchhh
Confidence 345679999999999999964 46667776667666544221 111122 2222221111 1
Q ss_pred EEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC--------CCcEEEEEEcCCCCCCCccccCCCccc--
Q 003806 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--------NSAVIVLGATNRSDVLDPALRRPGRFD-- 495 (794)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--------~~~VIVIaATN~pd~LDpALlRpGRFd-- 495 (794)
-|||.|||. |...+.- ..+..--.+.+|+ +-.||-. -.++++.+++|++.... ..--|.||-
T Consensus 1565 lVLFcDeIn-Lp~~~~y-----~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~g-Rv~~~eRf~r~ 1636 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEY-----YPPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEG-RVKYYERFIRK 1636 (3164)
T ss_pred eEEEeeccC-Ccccccc-----CCCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcc-cCccHHHHhcC
Confidence 299999998 5443321 0000000111222 2223321 25789999999875432 011122443
Q ss_pred -eEEEeecCCHHhHHHHHHHHHhcCCCCCccccc------------h--------hHHhhhcCCCCHHHHHHHHHHHHHH
Q 003806 496 -RVVMVETPDKIGREAILKVHVSKKELPLAKDID------------L--------GDIASMTTGFTGADLANLVNEAALL 554 (794)
Q Consensus 496 -r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvd------------l--------~~LA~~t~GfSgaDL~~Lv~eAal~ 554 (794)
-.+.+..|.......|...++.+..+. .++.. + ........||+|+||...++...-.
T Consensus 1637 ~v~vf~~ype~~SL~~Iyea~l~~s~l~-~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~y 1715 (3164)
T COG5245 1637 PVFVFCCYPELASLRNIYEAVLMGSYLC-FDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGY 1715 (3164)
T ss_pred ceEEEecCcchhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhH
Confidence 357788999999999888777653221 11110 0 0111234689999999888755444
Q ss_pred H
Q 003806 555 A 555 (794)
Q Consensus 555 A 555 (794)
|
T Consensus 1716 a 1716 (3164)
T COG5245 1716 A 1716 (3164)
T ss_pred H
Confidence 4
No 475
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.029 Score=59.99 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 412 ~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
.-|-++++|-...|.++++||-- .+-+...+..+..+|.++.. .+..|+..|....
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~-----------~gvD~~~~~~i~~lL~~l~~----eg~tIl~vtHDL~ 200 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPF-----------TGVDVAGQKEIYDLLKELRQ----EGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCc-----------ccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCcH
Confidence 34556777778889999999942 23445556777888888762 2556666776543
No 476
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.01 E-value=0.024 Score=56.48 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
.+.-+.|.|+||+|||++|+.++..+ +..+..++...+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 34568999999999999999999876 44566666655443
No 477
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.00 E-value=0.034 Score=62.66 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
..||+||||||||+|++.+|+.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998865
No 478
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.99 E-value=0.02 Score=69.52 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++...+.++||+|+|||||++.+++..
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999864
No 479
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.026 Score=63.74 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=38.8
Q ss_pred hHhHHHHHHHHHHh-cChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 003806 338 DEAKEELEEIVEFL-RSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (794)
Q Consensus 338 devK~~L~eiV~~L-k~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~ 401 (794)
+++++.+.+.+... ..+.. .....++.++|+||+|+|||+++..+|..+ +.++..+++..+
T Consensus 181 ~~v~~~~~~~L~~~l~~~~~---~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 181 DDITDWFVPYLSGKLAVEDS---FDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred HHHHHHHHHHhcCcEeeCCC---ceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 45556555554432 11111 123457779999999999999999998755 555555555433
No 480
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.98 E-value=0.042 Score=55.63 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=29.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhc
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG 407 (794)
|.|+|++|+|||++++.++...+.+++ ++.++......
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~~ 39 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVVE 39 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHHh
Confidence 689999999999999999998767765 45566544333
No 481
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.98 E-value=0.039 Score=57.14 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~ 387 (794)
.+-++|+||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999974
No 482
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.97 E-value=0.01 Score=57.62 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvp 392 (794)
+..-++|.|+.|+|||+++|.+++.++++
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 44569999999999999999999999865
No 483
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.97 E-value=0.021 Score=69.26 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.+++...+.++||+|+|||||++.+++..
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566679999999999999999999854
No 484
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.95 E-value=0.019 Score=61.51 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=68.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CcEEEEecch-hH--------HHhhcc--------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE-FV--------ELYVGM-------------- 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~se-~~--------~~~vG~-------------- 408 (794)
|++...-.=|+||||+|||.|+-.+|-... ...++++... |. +.|.-.
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 344444455999999999999998876543 3467776543 21 111000
Q ss_pred chHHHHHHH----HHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 003806 409 GASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (794)
Q Consensus 409 ~~~~vr~lF----~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (794)
....+..++ .........+|+||-|-++.+..-.+ .+...++.+.+..++..+..+....++.||.|..-....
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~ 191 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKI 191 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSST
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecC
Confidence 001111222 22223456799999999998643211 123345667777777776655555666666554333333
Q ss_pred C
Q 003806 485 D 485 (794)
Q Consensus 485 D 485 (794)
+
T Consensus 192 ~ 192 (256)
T PF08423_consen 192 D 192 (256)
T ss_dssp T
T ss_pred C
Confidence 3
No 485
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.94 E-value=0.11 Score=52.80 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..++|.|++|+|||+|.+++.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 46999999999999999999874
No 486
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.94 E-value=0.027 Score=68.84 Aligned_cols=97 Identities=22% Similarity=0.344 Sum_probs=57.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh---cC--CcEEEEecchhH----HHhhccchHHHHHHHHHHH----------hcCCE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE---AE--VPFISCSASEFV----ELYVGMGASRVRDLFARAK----------KEAPS 426 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e---lg--vpfi~is~se~~----~~~vG~~~~~vr~lF~~Ar----------~~aP~ 426 (794)
+-++|.|+||||||++++++... .+ .+++.+..+.-. ....|..+..+..++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 35899999999999999998653 34 555555433221 1222333445555553211 12346
Q ss_pred EEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+|+|||+..+. ...+..|+..+ .....+++++=.+.
T Consensus 419 llIvDEaSMvd---------------~~~~~~Ll~~~---~~~~rlilvGD~~Q 454 (720)
T TIGR01448 419 LLIVDESSMMD---------------TWLALSLLAAL---PDHARLLLVGDTDQ 454 (720)
T ss_pred EEEEeccccCC---------------HHHHHHHHHhC---CCCCEEEEECcccc
Confidence 99999997763 12345566544 34456777776554
No 487
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.93 E-value=0.032 Score=57.05 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
+.+...+.|.||+|+|||+|.+.+++.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 445667999999999999999999997
No 488
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.92 E-value=0.047 Score=63.99 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++..-+.|+||+|+|||||++.+++..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556669999999999999999999865
No 489
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.92 E-value=0.044 Score=57.62 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~ 387 (794)
....++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999987
No 490
>PRK08233 hypothetical protein; Provisional
Probab=95.92 E-value=0.009 Score=59.26 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=26.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC-CcEEEEec
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSA 398 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elg-vpfi~is~ 398 (794)
.-|.+.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578889999999999999999885 44544443
No 491
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.92 E-value=0.018 Score=69.98 Aligned_cols=28 Identities=46% Similarity=0.616 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++...+.++||+|+|||||++.+++..
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999864
No 492
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.91 E-value=0.025 Score=58.90 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+...+.|.||+|+|||+|.+.+++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455568999999999999999999853
No 493
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.90 E-value=0.015 Score=59.33 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.|+-++|+||+|+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46679999999999999999998765
No 494
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.88 E-value=0.049 Score=55.79 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+...+.|.||+|+|||+|++.+++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455569999999999999999999864
No 495
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.87 E-value=0.039 Score=62.05 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
..|..+++.||.|||||++.+++...+ +.+++.+.......
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAA 63 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHH
Confidence 456789999999999999999998766 34455555444444
No 496
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.85 E-value=0.01 Score=66.11 Aligned_cols=70 Identities=29% Similarity=0.380 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEe-cchhH-------HHh------hccchHHHHHHHHHHHhcCCEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFV-------ELY------VGMGASRVRDLFARAKKEAPSII 428 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is-~se~~-------~~~------vG~~~~~vr~lF~~Ar~~aP~IL 428 (794)
..++++.|++|+|||++.+++.+...- ..+.+. ..++. ... .|.+.-.+.++++.+....|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 457999999999999999999887531 122221 11111 000 12233456788889999999999
Q ss_pred EEcccc
Q 003806 429 FIDEID 434 (794)
Q Consensus 429 fIDEID 434 (794)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999983
No 497
>PRK14526 adenylate kinase; Provisional
Probab=95.85 E-value=0.0077 Score=62.75 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
.++|.||||+|||++++.+|+..+.+++ +..+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~llr 36 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLFR 36 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHHH
Confidence 3889999999999999999999887664 4555543
No 498
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.82 E-value=0.028 Score=68.32 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++...+.++||+|+|||+|++.+++..
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999864
No 499
>PLN02459 probable adenylate kinase
Probab=95.82 E-value=0.0092 Score=64.12 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=28.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
..++|.||||+|||++|+.+|...+++.+ +..+++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdllR 65 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDLVR 65 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHHHH
Confidence 45888999999999999999999986554 4555543
No 500
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.061 Score=63.15 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.....+.|+||+|+|||+++..||..+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998753
Done!