Query 003806
Match_columns 794
No_of_seqs 737 out of 4103
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 9.4E-82 3.2E-86 715.8 42.4 446 326-782 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 2.4E-78 8.1E-83 691.5 38.2 447 321-782 20-468 (499)
3 4b4t_J 26S protease regulatory 100.0 3.6E-52 1.2E-56 462.0 28.5 254 322-578 138-392 (405)
4 4b4t_I 26S protease regulatory 100.0 8.1E-51 2.8E-55 452.9 27.0 254 323-579 173-427 (437)
5 4b4t_H 26S protease regulatory 100.0 1.1E-50 3.6E-55 455.6 26.9 258 323-583 200-458 (467)
6 4b4t_M 26S protease regulatory 100.0 7.7E-50 2.6E-54 448.4 26.7 253 323-578 172-425 (434)
7 4b4t_L 26S protease subunit RP 100.0 1.5E-49 5.1E-54 446.5 27.6 253 322-577 171-424 (437)
8 4b4t_K 26S protease regulatory 100.0 7.4E-49 2.5E-53 440.0 27.5 252 323-577 163-416 (428)
9 3cf2_A TER ATPase, transitiona 100.0 8.6E-46 2.9E-50 441.7 12.2 282 274-558 403-701 (806)
10 2di4_A Zinc protease, cell div 100.0 2.8E-45 9.5E-50 380.6 13.7 199 576-782 1-201 (238)
11 3cf2_A TER ATPase, transitiona 100.0 1.6E-41 5.6E-46 404.9 20.9 247 325-577 197-461 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 4.4E-38 1.5E-42 327.4 27.8 253 324-579 4-256 (257)
13 2qz4_A Paraplegin; AAA+, SPG7, 100.0 8.3E-39 2.8E-43 331.3 19.2 261 327-587 1-261 (262)
14 2x8a_A Nuclear valosin-contain 100.0 1.6E-38 5.4E-43 337.2 20.4 250 325-578 3-267 (274)
15 3cf0_A Transitional endoplasmi 100.0 2.5E-37 8.6E-42 331.0 24.6 250 324-576 7-282 (301)
16 3h4m_A Proteasome-activating n 100.0 6E-36 2E-40 314.8 27.2 251 324-577 9-260 (285)
17 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.2E-36 2.8E-40 322.9 24.7 227 324-558 4-233 (322)
18 1ixz_A ATP-dependent metallopr 100.0 4.2E-35 1.5E-39 304.4 27.6 246 324-572 8-253 (254)
19 3eie_A Vacuolar protein sortin 100.0 1.5E-35 5E-40 320.0 20.4 229 322-558 8-238 (322)
20 2r62_A Cell division protease 100.0 5.2E-37 1.8E-41 320.5 4.8 253 324-578 3-256 (268)
21 2qp9_X Vacuolar protein sortin 100.0 1.9E-34 6.4E-39 316.3 22.7 227 324-558 43-271 (355)
22 1iy2_A ATP-dependent metallopr 100.0 1.5E-33 5E-38 297.5 28.7 246 324-572 32-277 (278)
23 3hu3_A Transitional endoplasmi 100.0 1.3E-33 4.4E-38 322.3 25.4 244 327-576 199-460 (489)
24 2zan_A Vacuolar protein sortin 100.0 2.8E-33 9.6E-38 315.8 21.3 228 323-558 125-355 (444)
25 3b9p_A CG5977-PA, isoform A; A 100.0 6.2E-32 2.1E-36 286.1 18.7 244 324-575 13-272 (297)
26 3d8b_A Fidgetin-like protein 1 100.0 2.1E-31 7.3E-36 291.9 23.5 245 326-578 78-337 (357)
27 3vfd_A Spastin; ATPase, microt 100.0 1.1E-30 3.7E-35 289.0 22.5 245 324-576 107-366 (389)
28 1ypw_A Transitional endoplasmi 100.0 1.1E-33 3.9E-38 340.3 -2.4 233 324-559 469-702 (806)
29 3t15_A Ribulose bisphosphate c 100.0 7.7E-31 2.6E-35 280.3 9.2 229 360-606 31-281 (293)
30 1ypw_A Transitional endoplasmi 100.0 1.5E-27 5.1E-32 287.2 24.0 245 325-575 197-459 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.4E-26 4.9E-31 261.7 -4.0 206 326-550 31-262 (456)
32 3uk6_A RUVB-like 2; hexameric 99.9 2.2E-22 7.6E-27 218.6 20.2 249 327-605 39-358 (368)
33 3syl_A Protein CBBX; photosynt 99.9 7.4E-23 2.5E-27 217.1 14.4 225 331-569 29-280 (309)
34 3pfi_A Holliday junction ATP-d 99.9 1.1E-20 3.9E-25 203.3 22.3 216 325-574 22-253 (338)
35 1ofh_A ATP-dependent HSL prote 99.8 4.7E-20 1.6E-24 194.6 15.6 237 332-574 15-298 (310)
36 1hqc_A RUVB; extended AAA-ATPa 99.8 9E-20 3.1E-24 194.4 17.9 219 327-575 7-238 (324)
37 3m6a_A ATP-dependent protease 99.8 5.3E-21 1.8E-25 220.9 8.1 226 328-575 77-341 (543)
38 1d2n_A N-ethylmaleimide-sensit 99.8 2E-19 6.8E-24 188.5 16.7 225 331-574 32-263 (272)
39 1g41_A Heat shock protein HSLU 99.8 2.2E-20 7.5E-25 210.2 6.5 169 332-513 15-189 (444)
40 3hws_A ATP-dependent CLP prote 99.8 7E-19 2.4E-23 192.4 15.3 221 333-557 16-324 (363)
41 2v1u_A Cell division control p 99.8 4.7E-18 1.6E-22 183.9 20.9 227 328-576 15-277 (387)
42 2z4s_A Chromosomal replication 99.8 1.3E-18 4.4E-23 196.1 16.0 223 327-576 100-333 (440)
43 3pvs_A Replication-associated 99.8 2.3E-18 8E-23 194.5 17.1 209 325-576 19-245 (447)
44 2chg_A Replication factor C sm 99.8 1.3E-17 4.4E-22 165.1 20.2 203 326-573 11-224 (226)
45 1l8q_A Chromosomal replication 99.8 9.3E-18 3.2E-22 180.1 17.2 198 327-554 6-214 (324)
46 2qby_B CDC6 homolog 3, cell di 99.7 3.7E-17 1.3E-21 177.8 21.3 216 329-576 17-271 (384)
47 3bos_A Putative DNA replicatio 99.7 1.5E-17 5.1E-22 168.0 16.6 207 327-573 23-241 (242)
48 1g8p_A Magnesium-chelatase 38 99.7 1.7E-17 5.9E-22 178.4 18.0 220 326-577 18-324 (350)
49 3u61_B DNA polymerase accessor 99.7 2E-17 6.8E-22 177.2 16.7 207 323-574 17-236 (324)
50 2r44_A Uncharacterized protein 99.7 2.3E-17 7.8E-22 177.4 16.7 215 330-578 25-300 (331)
51 1njg_A DNA polymerase III subu 99.7 6.6E-17 2.3E-21 161.5 18.9 204 326-572 17-248 (250)
52 1sxj_A Activator 1 95 kDa subu 99.7 7.9E-18 2.7E-22 193.1 13.8 226 324-574 31-273 (516)
53 1in4_A RUVB, holliday junction 99.7 1.8E-16 6.2E-21 171.9 22.4 214 328-575 21-250 (334)
54 2qby_A CDC6 homolog 1, cell di 99.7 1.7E-16 5.9E-21 171.3 20.5 226 327-576 15-273 (386)
55 1um8_A ATP-dependent CLP prote 99.7 4.3E-17 1.5E-21 178.9 15.1 221 333-557 22-341 (376)
56 1sxj_D Activator 1 41 kDa subu 99.7 1.1E-16 3.6E-21 172.2 17.1 211 323-573 28-261 (353)
57 1r6b_X CLPA protein; AAA+, N-t 99.7 7.7E-17 2.6E-21 192.5 16.3 223 328-576 182-434 (758)
58 1jbk_A CLPB protein; beta barr 99.7 3.9E-17 1.3E-21 157.9 9.9 159 328-512 18-194 (195)
59 3pxg_A Negative regulator of g 99.7 1.4E-16 4.7E-21 180.8 14.2 206 327-574 175-405 (468)
60 4fcw_A Chaperone protein CLPB; 99.7 1.2E-16 3.9E-21 169.4 12.6 204 332-556 17-279 (311)
61 2chq_A Replication factor C sm 99.7 2.6E-16 8.9E-21 166.3 14.8 204 324-572 9-223 (319)
62 1fnn_A CDC6P, cell division co 99.7 2.4E-15 8.2E-20 163.3 20.7 221 329-576 14-275 (389)
63 1sxj_B Activator 1 37 kDa subu 99.7 1.7E-15 5.9E-20 160.2 18.7 205 324-573 13-229 (323)
64 1jr3_A DNA polymerase III subu 99.7 2.2E-15 7.6E-20 163.1 18.9 204 326-572 10-241 (373)
65 3pxi_A Negative regulator of g 99.6 6.3E-16 2.2E-20 184.9 15.7 199 331-555 490-724 (758)
66 3te6_A Regulatory protein SIR3 99.6 5.8E-16 2E-20 167.7 13.0 139 362-518 42-213 (318)
67 1qvr_A CLPB protein; coiled co 99.6 1.2E-15 4E-20 185.0 16.2 204 328-558 166-395 (854)
68 1iqp_A RFCS; clamp loader, ext 99.6 2.5E-15 8.4E-20 159.3 16.6 204 324-572 17-231 (327)
69 1r6b_X CLPA protein; AAA+, N-t 99.6 1.2E-15 4.2E-20 182.1 14.2 196 332-554 458-714 (758)
70 3pxi_A Negative regulator of g 99.6 2.9E-15 9.9E-20 179.1 17.2 190 327-558 175-388 (758)
71 2p65_A Hypothetical protein PF 99.6 4E-16 1.4E-20 151.0 7.6 152 328-504 18-187 (187)
72 2bjv_A PSP operon transcriptio 99.6 5.7E-15 2E-19 153.8 14.3 209 329-568 3-250 (265)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.7E-15 6E-20 173.2 10.2 210 332-575 22-285 (500)
74 1sxj_C Activator 1 40 kDa subu 99.6 3.5E-14 1.2E-18 153.6 16.5 210 323-572 16-236 (340)
75 3f9v_A Minichromosome maintena 99.6 5E-16 1.7E-20 181.3 2.1 221 332-576 295-588 (595)
76 1sxj_E Activator 1 40 kDa subu 99.6 5.6E-14 1.9E-18 151.6 17.4 194 326-555 8-244 (354)
77 1ojl_A Transcriptional regulat 99.5 1.2E-14 4.1E-19 155.9 9.5 202 332-568 2-245 (304)
78 1qvr_A CLPB protein; coiled co 99.5 1.7E-14 5.7E-19 174.9 10.7 202 331-555 557-819 (854)
79 1w5s_A Origin recognition comp 99.5 4.8E-13 1.6E-17 146.5 18.1 228 329-575 19-293 (412)
80 3cmw_A Protein RECA, recombina 99.4 2.7E-13 9.3E-18 172.2 7.8 156 325-481 1013-1218(1706)
81 3k1j_A LON protease, ATP-depen 99.4 1.5E-12 5.2E-17 152.1 12.6 102 470-574 251-374 (604)
82 3n70_A Transport activator; si 99.3 1E-12 3.4E-17 125.4 7.3 113 332-481 1-116 (145)
83 3co5_A Putative two-component 99.3 3.6E-13 1.2E-17 128.4 3.8 112 333-481 5-116 (143)
84 1a5t_A Delta prime, HOLB; zinc 99.3 2E-11 6.9E-16 132.2 16.8 161 362-552 21-209 (334)
85 3kw6_A 26S protease regulatory 99.2 3.6E-11 1.2E-15 103.6 9.2 75 501-577 1-75 (78)
86 2gno_A DNA polymerase III, gam 99.2 1E-10 3.5E-15 125.8 15.0 142 336-516 1-152 (305)
87 4akg_A Glutathione S-transfera 99.2 1.3E-10 4.4E-15 153.6 18.2 173 364-553 1266-1487(2695)
88 3vlf_B 26S protease regulatory 99.2 3.5E-11 1.2E-15 106.4 8.9 80 504-585 2-81 (88)
89 2krk_A 26S protease regulatory 99.2 3.8E-11 1.3E-15 105.9 8.8 77 500-578 8-84 (86)
90 3ec2_A DNA replication protein 99.1 1.1E-10 3.6E-15 114.5 9.4 133 327-481 5-143 (180)
91 1ny5_A Transcriptional regulat 99.1 2.1E-10 7.3E-15 127.0 10.6 210 331-572 136-384 (387)
92 2w58_A DNAI, primosome compone 99.0 4.1E-10 1.4E-14 112.0 7.7 104 327-437 20-128 (202)
93 3aji_B S6C, proteasome (prosom 99.0 1.2E-09 4.1E-14 95.1 8.2 74 504-579 2-75 (83)
94 2dzn_B 26S protease regulatory 98.9 1E-09 3.4E-14 95.6 4.6 72 506-579 1-72 (82)
95 2fna_A Conserved hypothetical 98.9 1.3E-07 4.6E-12 100.5 21.6 188 327-550 8-252 (357)
96 3f8t_A Predicted ATPase involv 98.9 1.4E-08 4.8E-13 114.7 14.2 212 334-576 215-484 (506)
97 2qen_A Walker-type ATPase; unk 98.8 3E-07 1E-11 97.7 23.4 192 327-549 7-247 (350)
98 3dzd_A Transcriptional regulat 98.8 4.7E-09 1.6E-13 115.6 8.0 195 332-555 129-361 (368)
99 2vhj_A Ntpase P4, P4; non- hyd 98.7 1.7E-09 5.9E-14 117.0 1.9 121 362-488 120-242 (331)
100 2qgz_A Helicase loader, putati 98.7 6.4E-09 2.2E-13 111.8 5.5 102 328-437 120-227 (308)
101 2kjq_A DNAA-related protein; s 98.7 6.4E-09 2.2E-13 100.2 3.6 59 364-437 35-96 (149)
102 2r2a_A Uncharacterized protein 98.6 4.4E-08 1.5E-12 99.1 7.3 132 364-508 4-158 (199)
103 1svm_A Large T antigen; AAA+ f 98.5 5.8E-08 2E-12 107.4 5.4 120 360-502 164-284 (377)
104 4akg_A Glutathione S-transfera 98.4 3.6E-06 1.2E-10 112.0 20.7 166 365-555 645-840 (2695)
105 3cmu_A Protein RECA, recombina 98.4 3.4E-07 1.2E-11 118.2 9.3 118 361-478 1423-1561(2050)
106 2c9o_A RUVB-like 1; hexameric 98.3 2.7E-06 9.3E-11 95.9 11.2 129 425-575 296-437 (456)
107 1jr3_D DNA polymerase III, del 98.2 8.7E-06 3E-10 87.7 13.9 178 363-574 16-208 (343)
108 3vkg_A Dynein heavy chain, cyt 98.2 4.8E-06 1.7E-10 111.5 13.0 138 365-517 1304-1470(3245)
109 1tue_A Replication protein E1; 98.1 1.8E-06 6.2E-11 87.9 5.3 29 365-393 58-86 (212)
110 1ye8_A Protein THEP1, hypothet 98.0 1.8E-05 6.3E-10 78.2 9.9 28 367-394 2-29 (178)
111 2cvh_A DNA repair and recombin 97.8 2.9E-05 9.7E-10 77.2 7.5 40 361-400 16-55 (220)
112 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00012 4E-09 73.0 11.5 38 361-398 19-59 (235)
113 1u0j_A DNA replication protein 97.8 4.4E-05 1.5E-09 80.6 8.1 27 365-391 104-130 (267)
114 2ehv_A Hypothetical protein PH 97.7 0.00018 6E-09 72.9 11.9 131 361-503 26-208 (251)
115 1n0w_A DNA repair protein RAD5 97.7 7.5E-05 2.6E-09 75.4 8.3 78 361-438 20-133 (243)
116 1qhx_A CPT, protein (chloramph 97.7 9.4E-05 3.2E-09 71.4 8.5 39 365-403 3-41 (178)
117 2z43_A DNA repair and recombin 97.6 7.2E-05 2.5E-09 80.5 8.0 79 361-439 103-218 (324)
118 3vkg_A Dynein heavy chain, cyt 97.6 0.00021 7.2E-09 96.1 13.3 127 365-513 604-750 (3245)
119 1xp8_A RECA protein, recombina 97.6 0.00012 4.1E-09 80.6 8.9 78 361-438 70-166 (366)
120 3hr8_A Protein RECA; alpha and 97.5 8.8E-05 3E-09 81.4 6.9 78 361-438 57-153 (356)
121 2zr9_A Protein RECA, recombina 97.5 7.9E-05 2.7E-09 81.4 6.4 77 361-437 57-152 (349)
122 4a74_A DNA repair and recombin 97.5 0.0002 7E-09 71.4 8.4 29 361-389 21-49 (231)
123 1v5w_A DMC1, meiotic recombina 97.5 0.00021 7.3E-09 77.6 9.2 79 361-439 118-234 (343)
124 3cmu_A Protein RECA, recombina 97.4 0.00011 3.8E-09 95.3 6.4 119 361-479 728-867 (2050)
125 1z6t_A APAF-1, apoptotic prote 97.4 0.0031 1.1E-07 72.4 17.7 174 329-547 121-327 (591)
126 2dr3_A UPF0273 protein PH0284; 97.4 0.00079 2.7E-08 67.8 10.7 39 361-399 19-60 (247)
127 1u94_A RECA protein, recombina 97.3 0.00032 1.1E-08 76.9 8.2 78 361-438 59-155 (356)
128 3upu_A ATP-dependent DNA helic 97.3 0.0005 1.7E-08 77.3 9.8 63 324-398 16-82 (459)
129 3sfz_A APAF-1, apoptotic pepti 97.3 0.0029 1E-07 78.1 17.1 176 329-547 121-327 (1249)
130 1gvn_B Zeta; postsegregational 97.3 0.00056 1.9E-08 72.4 9.3 60 338-401 10-69 (287)
131 3trf_A Shikimate kinase, SK; a 97.3 0.00018 6.1E-09 69.9 4.7 33 364-396 4-36 (185)
132 3dm5_A SRP54, signal recogniti 97.3 0.0013 4.5E-08 74.1 12.3 174 364-553 99-308 (443)
133 2p5t_B PEZT; postsegregational 97.3 0.00059 2E-08 70.5 8.7 60 338-401 9-68 (253)
134 3io5_A Recombination and repai 97.2 0.00028 9.7E-09 76.3 6.3 72 367-438 30-125 (333)
135 2i1q_A DNA repair and recombin 97.2 0.00038 1.3E-08 74.4 7.3 115 361-477 94-255 (322)
136 2zts_A Putative uncharacterize 97.2 0.0011 3.7E-08 66.9 10.2 39 361-399 26-68 (251)
137 3lda_A DNA repair protein RAD5 97.2 0.00037 1.3E-08 77.6 7.2 118 361-480 174-327 (400)
138 2rhm_A Putative kinase; P-loop 97.2 0.00021 7.3E-09 69.5 4.6 34 362-395 2-35 (193)
139 1pzn_A RAD51, DNA repair and r 97.2 0.00055 1.9E-08 74.6 8.2 40 361-400 127-175 (349)
140 3vaa_A Shikimate kinase, SK; s 97.2 0.00024 8.1E-09 70.5 4.8 35 362-396 22-56 (199)
141 1g41_A Heat shock protein HSLU 97.1 0.0021 7.1E-08 72.5 12.2 95 412-513 240-346 (444)
142 3cmw_A Protein RECA, recombina 97.1 0.00034 1.2E-08 89.8 5.9 78 361-438 728-824 (1706)
143 2a5y_B CED-4; apoptosis; HET: 97.1 0.0042 1.4E-07 71.3 14.5 170 335-545 131-334 (549)
144 1zp6_A Hypothetical protein AT 97.1 0.00037 1.3E-08 67.9 4.8 40 362-401 6-45 (191)
145 2orw_A Thymidine kinase; TMTK, 97.1 0.00021 7.2E-09 70.8 3.1 31 366-396 4-37 (184)
146 2iyv_A Shikimate kinase, SK; t 97.1 0.00028 9.5E-09 68.6 3.6 31 366-396 3-33 (184)
147 1kag_A SKI, shikimate kinase I 97.0 0.00042 1.4E-08 66.4 4.6 31 365-395 4-34 (173)
148 2r8r_A Sensor protein; KDPD, P 97.0 0.0065 2.2E-07 62.6 13.6 162 366-556 7-209 (228)
149 3iij_A Coilin-interacting nucl 97.0 0.00039 1.3E-08 67.4 3.9 33 364-396 10-42 (180)
150 3kb2_A SPBC2 prophage-derived 97.0 0.00043 1.5E-08 65.8 4.1 31 367-397 3-33 (173)
151 1y63_A LMAJ004144AAA protein; 97.0 0.0004 1.4E-08 68.1 3.8 33 364-396 9-42 (184)
152 1nlf_A Regulatory protein REPA 96.9 0.0008 2.8E-08 70.3 6.2 27 362-388 27-53 (279)
153 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0011 3.8E-08 68.8 7.1 39 365-403 4-45 (260)
154 1via_A Shikimate kinase; struc 96.9 0.00049 1.7E-08 66.5 4.1 29 367-395 6-34 (175)
155 1qf9_A UMP/CMP kinase, protein 96.9 0.00057 2E-08 66.1 4.4 34 363-396 4-37 (194)
156 2cdn_A Adenylate kinase; phosp 96.9 0.00079 2.7E-08 66.5 5.2 34 363-396 18-51 (201)
157 3jvv_A Twitching mobility prot 96.9 0.00074 2.5E-08 74.0 5.2 68 367-434 125-206 (356)
158 1ly1_A Polynucleotide kinase; 96.9 0.00052 1.8E-08 65.7 3.5 30 365-394 2-32 (181)
159 1tev_A UMP-CMP kinase; ploop, 96.8 0.00063 2.2E-08 65.9 4.1 36 365-402 3-38 (196)
160 1zuh_A Shikimate kinase; alpha 96.8 0.00075 2.6E-08 64.6 4.4 31 366-396 8-38 (168)
161 2r6a_A DNAB helicase, replicat 96.8 0.0015 5.1E-08 73.5 7.5 39 361-399 199-241 (454)
162 2c95_A Adenylate kinase 1; tra 96.8 0.00059 2E-08 66.5 3.6 33 364-396 8-40 (196)
163 2iut_A DNA translocase FTSK; n 96.8 0.012 4E-07 68.3 14.7 74 426-513 345-420 (574)
164 3t61_A Gluconokinase; PSI-biol 96.8 0.00087 3E-08 66.2 4.7 32 364-395 17-48 (202)
165 1e6c_A Shikimate kinase; phosp 96.8 0.00086 2.9E-08 64.1 4.4 30 366-395 3-32 (173)
166 3lw7_A Adenylate kinase relate 96.8 0.00061 2.1E-08 64.4 3.2 29 367-396 3-31 (179)
167 1aky_A Adenylate kinase; ATP:A 96.8 0.00089 3E-08 67.2 4.6 33 364-396 3-35 (220)
168 3e1s_A Exodeoxyribonuclease V, 96.7 0.0013 4.3E-08 76.6 6.2 97 366-480 205-317 (574)
169 1cr0_A DNA primase/helicase; R 96.7 0.0014 4.9E-08 68.8 6.1 39 360-398 30-72 (296)
170 2vli_A Antibiotic resistance p 96.7 0.00075 2.6E-08 65.1 3.5 30 365-394 5-34 (183)
171 1zd8_A GTP:AMP phosphotransfer 96.7 0.00095 3.3E-08 67.4 4.3 34 363-396 5-38 (227)
172 2ze6_A Isopentenyl transferase 96.7 0.00089 3E-08 69.5 4.1 32 367-398 3-34 (253)
173 2q6t_A DNAB replication FORK h 96.7 0.0023 7.7E-08 71.8 7.6 39 361-399 196-238 (444)
174 2bwj_A Adenylate kinase 5; pho 96.7 0.00077 2.6E-08 65.8 3.3 33 364-396 11-43 (199)
175 3cm0_A Adenylate kinase; ATP-b 96.7 0.00081 2.8E-08 65.2 3.4 31 365-395 4-34 (186)
176 2pez_A Bifunctional 3'-phospho 96.7 0.0012 4.2E-08 63.9 4.7 37 364-400 4-43 (179)
177 2ius_A DNA translocase FTSK; n 96.7 0.0077 2.6E-07 69.0 11.8 76 424-513 296-374 (512)
178 1ukz_A Uridylate kinase; trans 96.6 0.00096 3.3E-08 65.8 3.7 33 364-396 14-46 (203)
179 1vma_A Cell division protein F 96.6 0.0041 1.4E-07 66.7 8.7 73 362-434 101-196 (306)
180 4eun_A Thermoresistant glucoki 96.6 0.0013 4.6E-08 65.1 4.6 33 363-395 27-59 (200)
181 1kht_A Adenylate kinase; phosp 96.6 0.001 3.6E-08 64.2 3.7 26 365-390 3-28 (192)
182 3umf_A Adenylate kinase; rossm 96.6 0.001 3.6E-08 68.0 3.8 40 362-403 26-65 (217)
183 1ak2_A Adenylate kinase isoenz 96.6 0.0014 4.8E-08 66.6 4.7 33 364-396 15-47 (233)
184 3tlx_A Adenylate kinase 2; str 96.6 0.00098 3.4E-08 68.6 3.5 34 363-396 27-60 (243)
185 3be4_A Adenylate kinase; malar 96.6 0.0011 3.8E-08 66.6 3.8 32 365-396 5-36 (217)
186 2b8t_A Thymidine kinase; deoxy 96.6 0.0016 5.5E-08 66.9 5.0 70 366-436 13-101 (223)
187 3dl0_A Adenylate kinase; phosp 96.6 0.0014 4.8E-08 65.3 4.4 30 367-396 2-31 (216)
188 4gp7_A Metallophosphoesterase; 96.6 0.001 3.6E-08 64.5 3.4 22 364-385 8-29 (171)
189 1knq_A Gluconate kinase; ALFA/ 96.6 0.0014 4.9E-08 62.9 4.2 31 365-395 8-38 (175)
190 3fb4_A Adenylate kinase; psych 96.5 0.0015 5.2E-08 65.0 4.3 30 367-396 2-31 (216)
191 1zak_A Adenylate kinase; ATP:A 96.5 0.0012 4.1E-08 66.3 3.5 37 364-402 4-40 (222)
192 2pt5_A Shikimate kinase, SK; a 96.5 0.0016 5.5E-08 62.0 4.2 29 367-395 2-30 (168)
193 2eyu_A Twitching motility prot 96.5 0.0012 4.1E-08 69.1 3.2 70 364-434 24-108 (261)
194 2v54_A DTMP kinase, thymidylat 96.5 0.0023 7.8E-08 62.8 5.0 35 364-398 3-38 (204)
195 1jjv_A Dephospho-COA kinase; P 96.4 0.0031 1.1E-07 62.3 6.0 34 366-402 3-36 (206)
196 2px0_A Flagellar biosynthesis 96.4 0.013 4.5E-07 62.3 11.2 91 338-432 79-190 (296)
197 1cke_A CK, MSSA, protein (cyti 96.4 0.0021 7.1E-08 64.3 4.7 31 365-395 5-35 (227)
198 3crm_A TRNA delta(2)-isopenten 96.3 0.0021 7.1E-08 69.6 4.3 36 364-399 4-39 (323)
199 2fz4_A DNA repair protein RAD2 96.3 0.0076 2.6E-07 61.7 8.3 33 367-399 110-142 (237)
200 3bh0_A DNAB-like replicative h 96.3 0.019 6.6E-07 61.3 11.7 39 361-399 64-105 (315)
201 3uie_A Adenylyl-sulfate kinase 96.3 0.0028 9.6E-08 62.7 4.8 38 363-400 23-63 (200)
202 1nks_A Adenylate kinase; therm 96.3 0.0021 7E-08 62.1 3.6 35 367-401 3-40 (194)
203 2ewv_A Twitching motility prot 96.3 0.0027 9.4E-08 69.7 5.0 73 362-434 133-219 (372)
204 2pbr_A DTMP kinase, thymidylat 96.3 0.0029 1E-07 61.2 4.6 31 367-397 2-35 (195)
205 3sr0_A Adenylate kinase; phosp 96.3 0.0024 8.2E-08 64.6 4.0 34 367-402 2-35 (206)
206 3ake_A Cytidylate kinase; CMP 96.3 0.0032 1.1E-07 61.8 4.8 30 367-396 4-33 (208)
207 2cbz_A Multidrug resistance-as 96.3 0.012 4.1E-07 60.5 9.3 28 362-389 28-55 (237)
208 1e4v_A Adenylate kinase; trans 96.2 0.0027 9.1E-08 63.5 4.0 30 367-396 2-31 (214)
209 2if2_A Dephospho-COA kinase; a 96.2 0.0021 7.3E-08 63.3 3.1 29 367-396 3-31 (204)
210 4a1f_A DNAB helicase, replicat 96.2 0.015 5.2E-07 63.2 10.0 38 361-398 42-82 (338)
211 2jaq_A Deoxyguanosine kinase; 96.2 0.0028 9.6E-08 61.9 3.7 29 367-395 2-30 (205)
212 3kl4_A SRP54, signal recogniti 96.1 0.019 6.4E-07 64.5 10.8 72 364-435 96-190 (433)
213 2bbw_A Adenylate kinase 4, AK4 96.1 0.0034 1.2E-07 64.2 4.4 32 364-395 26-57 (246)
214 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0011 3.7E-08 72.8 0.6 30 366-395 25-54 (359)
215 1uf9_A TT1252 protein; P-loop, 96.1 0.0038 1.3E-07 61.1 4.5 35 365-402 8-42 (203)
216 1uj2_A Uridine-cytidine kinase 96.1 0.0043 1.5E-07 63.8 5.1 40 363-402 20-67 (252)
217 1tf7_A KAIC; homohexamer, hexa 96.1 0.027 9.2E-07 64.4 12.0 113 362-484 36-188 (525)
218 2xb4_A Adenylate kinase; ATP-b 96.1 0.0035 1.2E-07 63.4 3.9 34 367-402 2-35 (223)
219 2z0h_A DTMP kinase, thymidylat 96.0 0.0046 1.6E-07 60.1 4.6 30 368-397 3-35 (197)
220 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.0019 6.5E-08 69.9 1.9 71 365-435 171-251 (330)
221 1tf7_A KAIC; homohexamer, hexa 96.0 0.036 1.2E-06 63.4 12.5 109 361-480 277-416 (525)
222 2grj_A Dephospho-COA kinase; T 96.0 0.0067 2.3E-07 60.5 5.6 36 367-404 14-49 (192)
223 2wwf_A Thymidilate kinase, put 96.0 0.0019 6.6E-08 63.7 1.6 29 364-392 9-37 (212)
224 3r20_A Cytidylate kinase; stru 96.0 0.0046 1.6E-07 63.8 4.4 32 364-395 8-39 (233)
225 2plr_A DTMP kinase, probable t 95.9 0.0059 2E-07 59.9 4.8 32 365-396 4-37 (213)
226 1g5t_A COB(I)alamin adenosyltr 95.9 0.033 1.1E-06 56.0 10.2 116 367-501 30-178 (196)
227 2qor_A Guanylate kinase; phosp 95.8 0.0073 2.5E-07 59.9 5.2 29 362-390 9-37 (204)
228 1nn5_A Similar to deoxythymidy 95.8 0.0025 8.4E-08 63.0 1.6 28 363-390 7-34 (215)
229 3nwj_A ATSK2; P loop, shikimat 95.8 0.0055 1.9E-07 63.8 4.3 32 365-396 48-79 (250)
230 1vht_A Dephospho-COA kinase; s 95.8 0.0061 2.1E-07 60.8 4.5 31 365-396 4-34 (218)
231 3tau_A Guanylate kinase, GMP k 95.8 0.0072 2.5E-07 60.4 4.9 27 364-390 7-33 (208)
232 3a8t_A Adenylate isopentenyltr 95.8 0.0046 1.6E-07 67.3 3.6 36 364-399 39-74 (339)
233 3c8u_A Fructokinase; YP_612366 95.7 0.013 4.3E-07 58.4 6.5 28 363-390 20-47 (208)
234 2qt1_A Nicotinamide riboside k 95.7 0.0045 1.5E-07 61.3 3.2 32 365-396 21-53 (207)
235 1q57_A DNA primase/helicase; d 95.7 0.048 1.6E-06 61.8 12.0 39 361-399 238-280 (503)
236 1q3t_A Cytidylate kinase; nucl 95.7 0.0076 2.6E-07 61.3 4.7 34 362-395 13-46 (236)
237 2h92_A Cytidylate kinase; ross 95.7 0.0071 2.4E-07 60.2 4.5 32 365-396 3-34 (219)
238 1ex7_A Guanylate kinase; subst 95.7 0.0089 3E-07 59.6 5.0 24 366-389 2-25 (186)
239 1w36_D RECD, exodeoxyribonucle 95.7 0.025 8.4E-07 66.1 9.6 23 366-388 165-187 (608)
240 1ltq_A Polynucleotide kinase; 95.6 0.0058 2E-07 64.0 3.7 30 365-394 2-32 (301)
241 4e22_A Cytidylate kinase; P-lo 95.6 0.0084 2.9E-07 61.9 4.8 31 365-395 27-57 (252)
242 2yvu_A Probable adenylyl-sulfa 95.6 0.0097 3.3E-07 57.8 4.9 36 364-399 12-50 (186)
243 3zvl_A Bifunctional polynucleo 95.6 0.011 3.7E-07 65.8 5.8 33 363-395 256-288 (416)
244 3foz_A TRNA delta(2)-isopenten 95.6 0.0071 2.4E-07 65.1 4.1 36 364-399 9-44 (316)
245 1m7g_A Adenylylsulfate kinase; 95.5 0.0075 2.6E-07 60.1 3.9 39 363-401 23-65 (211)
246 3ney_A 55 kDa erythrocyte memb 95.5 0.012 4.2E-07 59.2 5.4 27 364-390 18-44 (197)
247 2j41_A Guanylate kinase; GMP, 95.5 0.0077 2.6E-07 59.0 3.9 27 363-389 4-30 (207)
248 3bgw_A DNAB-like replicative h 95.5 0.046 1.6E-06 61.5 10.7 39 361-399 193-234 (444)
249 3b6e_A Interferon-induced heli 95.5 0.045 1.5E-06 53.5 9.3 23 366-388 49-71 (216)
250 2axn_A 6-phosphofructo-2-kinas 95.5 0.028 9.5E-07 64.5 8.7 42 364-405 34-78 (520)
251 4g1u_C Hemin import ATP-bindin 95.3 0.047 1.6E-06 57.1 9.4 27 363-389 35-61 (266)
252 3nh6_A ATP-binding cassette SU 95.3 0.06 2.1E-06 57.7 10.3 28 362-389 77-104 (306)
253 1kgd_A CASK, peripheral plasma 95.3 0.011 3.6E-07 57.7 4.1 26 365-390 5-30 (180)
254 1rz3_A Hypothetical protein rb 95.3 0.025 8.6E-07 56.0 6.8 38 363-400 20-60 (201)
255 2f6r_A COA synthase, bifunctio 95.3 0.0097 3.3E-07 62.6 3.9 35 365-402 75-109 (281)
256 3thx_B DNA mismatch repair pro 95.2 0.051 1.7E-06 66.4 10.4 110 362-484 670-799 (918)
257 2gxq_A Heat resistant RNA depe 95.2 0.082 2.8E-06 51.5 10.2 18 366-383 39-56 (207)
258 3llm_A ATP-dependent RNA helic 95.2 0.073 2.5E-06 53.8 9.9 21 366-386 77-97 (235)
259 3asz_A Uridine kinase; cytidin 95.1 0.0098 3.4E-07 58.8 3.2 32 364-395 5-38 (211)
260 3d3q_A TRNA delta(2)-isopenten 95.1 0.011 3.9E-07 64.3 3.8 34 365-398 7-40 (340)
261 4a82_A Cystic fibrosis transme 95.0 0.07 2.4E-06 61.8 10.3 28 362-389 364-391 (578)
262 2bdt_A BH3686; alpha-beta prot 95.0 0.016 5.4E-07 56.4 4.2 34 367-401 4-37 (189)
263 3tr0_A Guanylate kinase, GMP k 95.0 0.015 5E-07 57.0 3.9 26 364-389 6-31 (205)
264 3exa_A TRNA delta(2)-isopenten 95.0 0.014 4.9E-07 62.9 4.1 33 366-398 4-36 (322)
265 3rlf_A Maltose/maltodextrin im 94.9 0.065 2.2E-06 59.2 9.3 27 363-389 27-53 (381)
266 3fdi_A Uncharacterized protein 94.9 0.016 5.5E-07 58.0 4.0 29 367-395 8-36 (201)
267 1vt4_I APAF-1 related killer D 94.8 0.037 1.3E-06 68.3 7.7 43 335-388 131-173 (1221)
268 3iuy_A Probable ATP-dependent 94.8 0.072 2.5E-06 53.2 8.7 57 325-383 15-75 (228)
269 2oap_1 GSPE-2, type II secreti 94.8 0.0086 2.9E-07 68.6 2.0 71 364-434 259-343 (511)
270 3tui_C Methionine import ATP-b 94.8 0.038 1.3E-06 60.8 7.0 28 362-389 51-78 (366)
271 2qmh_A HPR kinase/phosphorylas 94.8 0.014 4.8E-07 59.1 3.2 32 365-397 34-65 (205)
272 3a00_A Guanylate kinase, GMP k 94.7 0.017 5.9E-07 56.4 3.6 24 366-389 2-25 (186)
273 1odf_A YGR205W, hypothetical 3 94.7 0.018 6.3E-07 61.0 4.1 40 362-401 28-73 (290)
274 1zu4_A FTSY; GTPase, signal re 94.7 0.041 1.4E-06 59.2 6.9 37 362-398 102-141 (320)
275 1p9r_A General secretion pathw 94.6 0.062 2.1E-06 60.0 8.4 68 367-434 169-246 (418)
276 1qde_A EIF4A, translation init 94.6 0.18 6.2E-06 49.9 11.0 54 327-382 12-68 (224)
277 4f4c_A Multidrug resistance pr 94.6 0.12 4.1E-06 65.7 11.9 29 362-390 441-469 (1321)
278 2yhs_A FTSY, cell division pro 94.6 0.067 2.3E-06 61.0 8.7 28 362-389 290-317 (503)
279 1hv8_A Putative ATP-dependent 94.6 0.12 4E-06 54.5 10.1 68 329-398 6-82 (367)
280 3e70_C DPA, signal recognition 94.6 0.057 2E-06 58.3 7.7 27 363-389 127-153 (328)
281 2xxa_A Signal recognition part 94.6 0.056 1.9E-06 60.6 7.8 71 363-433 98-192 (433)
282 1lvg_A Guanylate kinase, GMP k 94.6 0.018 6.1E-07 57.2 3.3 26 364-389 3-28 (198)
283 3b5x_A Lipid A export ATP-bind 94.5 0.088 3E-06 61.0 9.4 28 362-389 366-393 (582)
284 3qf4_B Uncharacterized ABC tra 94.4 0.13 4.5E-06 59.7 10.9 29 361-389 377-405 (598)
285 2j37_W Signal recognition part 94.4 0.053 1.8E-06 62.0 7.3 36 363-398 99-137 (504)
286 1t6n_A Probable ATP-dependent 94.4 0.54 1.8E-05 46.3 13.9 59 328-388 13-74 (220)
287 3b60_A Lipid A export ATP-bind 94.4 0.17 5.9E-06 58.5 11.7 28 362-389 366-393 (582)
288 3thx_A DNA mismatch repair pro 94.3 0.091 3.1E-06 64.4 9.5 24 364-387 661-684 (934)
289 3lnc_A Guanylate kinase, GMP k 94.3 0.018 6.3E-07 58.0 2.9 27 363-389 25-52 (231)
290 2xau_A PRE-mRNA-splicing facto 94.3 0.066 2.2E-06 64.3 8.1 24 365-388 109-132 (773)
291 3b9q_A Chloroplast SRP recepto 94.3 0.033 1.1E-06 59.4 4.9 28 362-389 97-124 (302)
292 1ls1_A Signal recognition part 94.3 0.08 2.7E-06 56.2 7.9 72 364-435 97-191 (295)
293 3eph_A TRNA isopentenyltransfe 94.2 0.022 7.4E-07 63.5 3.4 34 365-398 2-35 (409)
294 1x6v_B Bifunctional 3'-phospho 94.2 0.03 1E-06 65.7 4.8 38 364-401 51-91 (630)
295 3qf4_A ABC transporter, ATP-bi 94.2 0.039 1.3E-06 64.1 5.7 28 362-389 366-393 (587)
296 1z6g_A Guanylate kinase; struc 94.2 0.026 8.8E-07 56.9 3.6 27 363-389 21-47 (218)
297 1znw_A Guanylate kinase, GMP k 94.1 0.029 1E-06 55.7 3.8 28 363-390 18-45 (207)
298 2ged_A SR-beta, signal recogni 94.1 0.045 1.6E-06 52.6 5.0 27 363-389 46-72 (193)
299 1w4r_A Thymidine kinase; type 94.1 0.033 1.1E-06 56.0 4.1 71 364-436 19-103 (195)
300 1htw_A HI0065; nucleotide-bind 94.0 0.034 1.2E-06 53.7 4.0 28 362-389 30-57 (158)
301 1j8m_F SRP54, signal recogniti 93.9 0.093 3.2E-06 55.8 7.5 69 365-433 98-189 (297)
302 2jeo_A Uridine-cytidine kinase 93.9 0.031 1.1E-06 57.1 3.6 29 364-392 24-52 (245)
303 3fe2_A Probable ATP-dependent 93.9 0.14 4.8E-06 51.8 8.4 55 327-383 27-84 (242)
304 2gza_A Type IV secretion syste 93.9 0.032 1.1E-06 60.9 3.8 73 362-434 172-262 (361)
305 2pl3_A Probable ATP-dependent 93.9 0.17 5.7E-06 50.7 8.9 54 328-383 24-80 (236)
306 3p32_A Probable GTPase RV1496/ 93.8 0.16 5.4E-06 55.1 9.2 34 364-397 78-114 (355)
307 2v3c_C SRP54, signal recogniti 93.8 0.077 2.6E-06 59.5 6.9 36 364-399 98-136 (432)
308 2v9p_A Replication protein E1; 93.8 0.04 1.4E-06 59.1 4.3 30 360-389 121-150 (305)
309 1bif_A 6-phosphofructo-2-kinas 93.8 0.12 4.2E-06 58.1 8.5 40 364-403 38-80 (469)
310 4b3f_X DNA-binding protein smu 93.7 0.084 2.9E-06 61.8 7.3 34 367-400 207-243 (646)
311 3gmt_A Adenylate kinase; ssgci 93.7 0.035 1.2E-06 57.2 3.6 33 368-402 11-43 (230)
312 2og2_A Putative signal recogni 93.7 0.046 1.6E-06 59.9 4.7 28 362-389 154-181 (359)
313 1c9k_A COBU, adenosylcobinamid 93.6 0.042 1.5E-06 54.5 3.9 32 368-400 2-33 (180)
314 3bor_A Human initiation factor 93.6 0.12 4E-06 52.2 7.3 56 327-384 28-86 (237)
315 1a7j_A Phosphoribulokinase; tr 93.6 0.03 1E-06 59.3 3.0 38 365-402 5-45 (290)
316 4aby_A DNA repair protein RECN 93.6 0.17 5.9E-06 55.3 9.1 23 367-389 62-84 (415)
317 1wb9_A DNA mismatch repair pro 93.5 0.2 6.8E-06 60.4 10.3 25 364-388 606-630 (800)
318 1gtv_A TMK, thymidylate kinase 93.5 0.018 6.1E-07 56.8 1.0 24 367-390 2-25 (214)
319 2ffh_A Protein (FFH); SRP54, s 93.5 0.17 5.9E-06 56.6 9.1 70 364-433 97-189 (425)
320 3hdt_A Putative kinase; struct 93.5 0.038 1.3E-06 56.5 3.5 30 366-395 15-44 (223)
321 1vec_A ATP-dependent RNA helic 93.5 0.15 5.2E-06 49.7 7.6 18 366-383 41-58 (206)
322 1s96_A Guanylate kinase, GMP k 93.3 0.049 1.7E-06 55.3 3.9 28 363-390 14-41 (219)
323 3tqc_A Pantothenate kinase; bi 93.3 0.12 4E-06 55.8 6.9 39 363-401 90-133 (321)
324 1sky_E F1-ATPase, F1-ATP synth 93.3 0.091 3.1E-06 59.5 6.3 24 366-389 152-175 (473)
325 1xx6_A Thymidine kinase; NESG, 93.2 0.066 2.2E-06 53.4 4.6 70 366-436 9-93 (191)
326 2zj8_A DNA helicase, putative 93.2 0.2 6.9E-06 59.1 9.5 20 364-383 38-57 (720)
327 1q0u_A Bstdead; DEAD protein, 93.2 0.23 7.9E-06 49.2 8.5 19 366-384 42-60 (219)
328 4eaq_A DTMP kinase, thymidylat 93.1 0.052 1.8E-06 55.3 3.7 33 364-396 25-59 (229)
329 2j0s_A ATP-dependent RNA helic 93.1 0.38 1.3E-05 51.9 10.8 58 327-386 35-95 (410)
330 1sq5_A Pantothenate kinase; P- 92.9 0.05 1.7E-06 57.8 3.4 27 364-390 79-105 (308)
331 4f4c_A Multidrug resistance pr 92.8 0.085 2.9E-06 67.0 5.7 28 362-389 1102-1129(1321)
332 1m8p_A Sulfate adenylyltransfe 92.8 0.065 2.2E-06 62.2 4.4 38 364-401 395-436 (573)
333 2va8_A SSO2462, SKI2-type heli 92.8 0.24 8.4E-06 58.3 9.3 70 327-398 6-83 (715)
334 2i3b_A HCR-ntpase, human cance 92.6 0.057 2E-06 53.6 3.1 23 367-389 3-25 (189)
335 1np6_A Molybdopterin-guanine d 92.6 0.071 2.4E-06 52.3 3.7 27 363-389 4-30 (174)
336 1s2m_A Putative ATP-dependent 92.6 0.28 9.7E-06 52.6 8.8 58 327-386 19-79 (400)
337 1p5z_B DCK, deoxycytidine kina 92.5 0.037 1.3E-06 57.0 1.7 31 364-394 23-54 (263)
338 1ewq_A DNA mismatch repair pro 92.5 0.34 1.2E-05 58.1 10.1 24 365-388 576-599 (765)
339 1yrb_A ATP(GTP)binding protein 92.4 0.36 1.2E-05 48.9 8.9 34 364-397 13-48 (262)
340 2j9r_A Thymidine kinase; TK1, 92.4 0.15 5E-06 52.0 5.9 30 368-397 31-63 (214)
341 3pey_A ATP-dependent RNA helic 92.4 0.34 1.2E-05 51.5 9.0 23 364-386 43-65 (395)
342 2ocp_A DGK, deoxyguanosine kin 92.3 0.082 2.8E-06 53.6 3.9 29 365-393 2-31 (241)
343 1rj9_A FTSY, signal recognitio 92.3 0.077 2.6E-06 56.7 3.8 26 364-389 101-126 (304)
344 3aez_A Pantothenate kinase; tr 92.3 0.076 2.6E-06 56.9 3.8 27 363-389 88-114 (312)
345 3tqf_A HPR(Ser) kinase; transf 92.2 0.093 3.2E-06 52.0 3.9 29 365-394 16-44 (181)
346 3j16_B RLI1P; ribosome recycli 92.2 0.34 1.2E-05 56.7 9.3 26 364-389 102-127 (608)
347 3sqw_A ATP-dependent RNA helic 92.2 0.35 1.2E-05 55.5 9.4 57 327-383 15-78 (579)
348 1xti_A Probable ATP-dependent 92.1 1.1 3.9E-05 47.5 12.8 57 329-387 8-67 (391)
349 3q72_A GTP-binding protein RAD 92.1 0.11 3.8E-06 48.2 4.3 21 367-387 4-24 (166)
350 3eiq_A Eukaryotic initiation f 92.1 0.32 1.1E-05 52.3 8.5 55 329-385 40-97 (414)
351 2qm8_A GTPase/ATPase; G protei 92.1 0.2 7E-06 54.0 6.8 27 363-389 53-79 (337)
352 3tif_A Uncharacterized ABC tra 92.0 0.059 2E-06 55.2 2.4 29 362-390 28-56 (235)
353 3i5x_A ATP-dependent RNA helic 92.0 0.47 1.6E-05 53.9 10.2 19 364-382 110-128 (563)
354 3def_A T7I23.11 protein; chlor 91.9 0.36 1.2E-05 49.7 8.3 25 365-389 36-60 (262)
355 3g5u_A MCG1178, multidrug resi 91.9 0.31 1.1E-05 61.7 9.2 28 362-389 413-440 (1284)
356 3dz8_A RAS-related protein RAB 91.8 0.35 1.2E-05 46.4 7.6 23 367-389 25-47 (191)
357 3ber_A Probable ATP-dependent 91.8 0.33 1.1E-05 49.6 7.7 55 327-383 41-98 (249)
358 2pcj_A ABC transporter, lipopr 91.7 0.053 1.8E-06 55.1 1.6 28 363-390 28-55 (224)
359 3ozx_A RNAse L inhibitor; ATP 91.7 0.36 1.2E-05 55.5 8.8 27 363-389 292-318 (538)
360 3ice_A Transcription terminati 91.7 0.83 2.8E-05 50.8 11.2 33 365-397 174-211 (422)
361 2onk_A Molybdate/tungstate ABC 91.7 0.075 2.6E-06 54.7 2.8 28 362-390 22-49 (240)
362 1b0u_A Histidine permease; ABC 91.6 0.069 2.4E-06 55.7 2.4 29 362-390 29-57 (262)
363 2fh5_B SR-beta, signal recogni 91.6 0.66 2.2E-05 45.2 9.4 24 365-388 7-30 (214)
364 3b85_A Phosphate starvation-in 91.4 0.076 2.6E-06 53.5 2.4 23 366-388 23-45 (208)
365 3kta_A Chromosome segregation 91.4 0.12 4E-06 49.7 3.7 24 367-390 28-51 (182)
366 2p6r_A Afuhel308 helicase; pro 91.4 0.24 8.2E-06 58.3 7.0 34 365-398 40-76 (702)
367 4i1u_A Dephospho-COA kinase; s 91.4 0.11 3.7E-06 52.8 3.5 30 366-396 10-39 (210)
368 2f9l_A RAB11B, member RAS onco 91.4 0.1 3.5E-06 50.8 3.2 23 367-389 7-29 (199)
369 1xjc_A MOBB protein homolog; s 91.3 0.12 4E-06 50.8 3.6 33 365-397 4-39 (169)
370 2zu0_C Probable ATP-dependent 91.3 0.091 3.1E-06 54.9 2.9 28 362-389 43-70 (267)
371 1nrj_B SR-beta, signal recogni 91.3 0.13 4.4E-06 50.5 3.9 26 364-389 11-36 (218)
372 1wp9_A ATP-dependent RNA helic 91.3 0.3 1E-05 52.9 7.1 33 367-399 25-61 (494)
373 2o8b_B DNA mismatch repair pro 91.3 0.56 1.9E-05 58.1 10.3 22 365-386 789-810 (1022)
374 1mv5_A LMRA, multidrug resista 91.2 0.071 2.4E-06 54.8 2.0 27 363-389 26-52 (243)
375 3cr8_A Sulfate adenylyltranfer 91.2 0.089 3E-06 60.8 3.0 40 364-403 368-411 (552)
376 2ghi_A Transport protein; mult 91.2 0.081 2.8E-06 55.1 2.4 29 362-390 43-71 (260)
377 1g6h_A High-affinity branched- 91.2 0.068 2.3E-06 55.5 1.8 27 364-390 32-58 (257)
378 1oix_A RAS-related protein RAB 91.2 0.1 3.4E-06 50.7 3.0 23 367-389 31-53 (191)
379 2ixe_A Antigen peptide transpo 91.1 0.084 2.9E-06 55.3 2.4 29 362-390 42-70 (271)
380 2olj_A Amino acid ABC transpor 91.1 0.084 2.9E-06 55.2 2.4 29 362-390 47-75 (263)
381 1fuu_A Yeast initiation factor 91.1 0.29 9.9E-06 52.2 6.7 56 326-383 18-76 (394)
382 2d2e_A SUFC protein; ABC-ATPas 91.1 0.086 3E-06 54.4 2.4 26 363-388 27-52 (250)
383 2fwr_A DNA repair protein RAD2 91.0 0.25 8.6E-06 54.8 6.4 33 367-399 110-142 (472)
384 2pze_A Cystic fibrosis transme 91.0 0.076 2.6E-06 54.1 1.9 28 363-390 32-59 (229)
385 2f7s_A C25KG, RAS-related prot 90.9 0.98 3.4E-05 44.1 9.9 22 367-388 27-48 (217)
386 2dyk_A GTP-binding protein; GT 90.9 0.12 4.2E-06 47.6 3.1 23 367-389 3-25 (161)
387 2gks_A Bifunctional SAT/APS ki 90.9 0.4 1.4E-05 55.3 8.0 39 365-403 372-413 (546)
388 2p67_A LAO/AO transport system 90.9 0.4 1.4E-05 51.6 7.6 27 363-389 54-80 (341)
389 1ji0_A ABC transporter; ATP bi 90.9 0.079 2.7E-06 54.4 1.9 28 363-390 30-57 (240)
390 1z2a_A RAS-related protein RAB 90.9 0.12 4E-06 48.0 2.9 23 366-388 6-28 (168)
391 1lw7_A Transcriptional regulat 90.9 0.12 4.2E-06 56.0 3.6 28 365-392 170-197 (365)
392 2ff7_A Alpha-hemolysin translo 90.9 0.079 2.7E-06 54.7 1.9 28 363-390 33-60 (247)
393 1sgw_A Putative ABC transporte 90.8 0.076 2.6E-06 53.8 1.7 28 363-390 33-60 (214)
394 3fvq_A Fe(3+) IONS import ATP- 90.8 0.094 3.2E-06 57.5 2.5 27 363-389 28-54 (359)
395 3gfo_A Cobalt import ATP-bindi 90.7 0.081 2.8E-06 55.7 1.9 28 363-390 32-59 (275)
396 1vpl_A ABC transporter, ATP-bi 90.7 0.095 3.3E-06 54.5 2.4 29 362-390 38-66 (256)
397 2yz2_A Putative ABC transporte 90.7 0.097 3.3E-06 54.6 2.4 29 362-390 30-58 (266)
398 3oiy_A Reverse gyrase helicase 90.6 0.14 4.7E-06 55.8 3.7 21 365-385 36-56 (414)
399 2f1r_A Molybdopterin-guanine d 90.6 0.094 3.2E-06 51.3 2.1 24 366-389 3-26 (171)
400 3sop_A Neuronal-specific septi 90.6 0.13 4.3E-06 53.9 3.2 23 367-389 4-26 (270)
401 2qi9_C Vitamin B12 import ATP- 90.5 0.087 3E-06 54.6 1.9 28 363-390 24-51 (249)
402 1svi_A GTP-binding protein YSX 90.5 0.1 3.4E-06 50.1 2.2 25 364-388 22-46 (195)
403 2yyz_A Sugar ABC transporter, 90.4 0.12 4.1E-06 56.6 3.0 27 363-389 27-53 (359)
404 4edh_A DTMP kinase, thymidylat 90.4 0.23 7.9E-06 50.1 4.9 33 365-397 6-41 (213)
405 1kao_A RAP2A; GTP-binding prot 90.3 0.15 5.2E-06 46.9 3.2 22 367-388 5-26 (167)
406 2it1_A 362AA long hypothetical 90.3 0.12 4.2E-06 56.6 2.9 27 363-389 27-53 (362)
407 2ihy_A ABC transporter, ATP-bi 90.3 0.093 3.2E-06 55.3 1.9 28 363-390 45-72 (279)
408 2ce2_X GTPase HRAS; signaling 90.3 0.14 4.8E-06 46.9 2.9 23 367-389 5-27 (166)
409 3d31_A Sulfate/molybdate ABC t 90.3 0.11 3.7E-06 56.7 2.4 27 363-389 24-50 (348)
410 2lkc_A Translation initiation 90.3 0.18 6.2E-06 47.3 3.7 25 364-388 7-31 (178)
411 2wji_A Ferrous iron transport 90.2 0.13 4.5E-06 48.5 2.7 22 367-388 5-26 (165)
412 3tbk_A RIG-I helicase domain; 90.2 1.3 4.4E-05 49.4 11.3 34 366-399 20-61 (555)
413 2zej_A Dardarin, leucine-rich 90.2 0.11 3.8E-06 49.9 2.2 22 367-388 4-25 (184)
414 1v43_A Sugar-binding transport 90.2 0.13 4.4E-06 56.6 2.9 27 363-389 35-61 (372)
415 2nq2_C Hypothetical ABC transp 90.1 0.098 3.4E-06 54.2 1.9 28 363-390 29-56 (253)
416 1u8z_A RAS-related protein RAL 90.1 0.16 5.5E-06 46.8 3.2 23 366-388 5-27 (168)
417 1ek0_A Protein (GTP-binding pr 90.0 0.17 5.7E-06 46.8 3.2 22 367-388 5-26 (170)
418 1z47_A CYSA, putative ABC-tran 90.0 0.12 4E-06 56.6 2.4 26 364-389 40-65 (355)
419 3v9p_A DTMP kinase, thymidylat 90.0 0.24 8.2E-06 50.7 4.6 32 365-396 25-63 (227)
420 1z0j_A RAB-22, RAS-related pro 90.0 0.16 5.6E-06 47.0 3.2 24 366-389 7-30 (170)
421 2nzj_A GTP-binding protein REM 89.9 0.14 4.9E-06 47.8 2.7 23 366-388 5-27 (175)
422 1g8f_A Sulfate adenylyltransfe 89.8 0.17 5.7E-06 58.0 3.6 27 365-391 395-421 (511)
423 3ly5_A ATP-dependent RNA helic 89.8 0.45 1.6E-05 48.9 6.6 19 366-384 92-110 (262)
424 3dkp_A Probable ATP-dependent 89.8 0.85 2.9E-05 45.8 8.5 18 366-383 67-84 (245)
425 1upt_A ARL1, ADP-ribosylation 89.8 0.2 7E-06 46.5 3.7 24 365-388 7-30 (171)
426 3lxw_A GTPase IMAP family memb 89.8 0.42 1.4E-05 48.9 6.3 24 365-388 21-44 (247)
427 3g5u_A MCG1178, multidrug resi 89.7 0.77 2.6E-05 58.1 9.9 28 362-389 1056-1083(1284)
428 1z08_A RAS-related protein RAB 89.7 0.17 5.9E-06 46.9 3.1 23 366-388 7-29 (170)
429 1wms_A RAB-9, RAB9, RAS-relate 89.7 0.18 6.2E-06 47.3 3.2 23 366-388 8-30 (177)
430 1oxx_K GLCV, glucose, ABC tran 89.7 0.11 3.8E-06 56.7 1.9 27 363-389 29-55 (353)
431 1ky3_A GTP-binding protein YPT 89.6 0.16 5.6E-06 47.6 2.9 24 365-388 8-31 (182)
432 1g29_1 MALK, maltose transport 89.6 0.13 4.5E-06 56.5 2.4 26 364-389 28-53 (372)
433 1g16_A RAS-related protein SEC 89.6 0.17 6E-06 46.8 3.0 22 367-388 5-26 (170)
434 3tmk_A Thymidylate kinase; pho 89.6 0.33 1.1E-05 49.3 5.2 30 365-394 5-34 (216)
435 2erx_A GTP-binding protein DI- 89.6 0.17 5.8E-06 46.9 2.9 22 367-388 5-26 (172)
436 2wjg_A FEOB, ferrous iron tran 89.6 0.17 5.7E-06 48.2 2.9 23 366-388 8-30 (188)
437 1r2q_A RAS-related protein RAB 89.5 0.19 6.6E-06 46.4 3.2 22 367-388 8-29 (170)
438 3vkw_A Replicase large subunit 89.5 0.19 6.4E-06 56.6 3.6 25 364-388 160-184 (446)
439 2hxs_A RAB-26, RAS-related pro 89.4 0.2 6.7E-06 47.1 3.2 23 366-388 7-29 (178)
440 3lv8_A DTMP kinase, thymidylat 89.3 0.2 6.9E-06 51.6 3.5 29 364-392 26-57 (236)
441 3q85_A GTP-binding protein REM 89.3 0.17 5.8E-06 47.1 2.7 21 367-387 4-24 (169)
442 1c1y_A RAS-related protein RAP 89.3 0.2 7E-06 46.2 3.2 22 367-388 5-26 (167)
443 3bc1_A RAS-related protein RAB 89.3 0.2 6.9E-06 47.4 3.2 23 366-388 12-34 (195)
444 4a2p_A RIG-I, retinoic acid in 89.2 1.2 4.1E-05 49.8 10.1 34 366-399 23-64 (556)
445 3cph_A RAS-related protein SEC 89.2 0.2 7E-06 48.6 3.3 24 365-388 20-43 (213)
446 2gk6_A Regulator of nonsense t 89.2 0.19 6.4E-06 58.7 3.5 33 367-399 197-233 (624)
447 3gd7_A Fusion complex of cysti 89.2 0.16 5.4E-06 56.3 2.7 27 362-388 44-70 (390)
448 1pui_A ENGB, probable GTP-bind 89.2 0.09 3.1E-06 51.3 0.7 28 362-389 23-50 (210)
449 1r8s_A ADP-ribosylation factor 89.2 0.21 7.3E-06 46.1 3.2 22 367-388 2-23 (164)
450 2gj8_A MNME, tRNA modification 89.2 0.17 6E-06 48.2 2.7 23 366-388 5-27 (172)
451 2atv_A RERG, RAS-like estrogen 89.1 0.22 7.6E-06 48.1 3.4 24 365-388 28-51 (196)
452 2pjz_A Hypothetical protein ST 89.1 0.15 5E-06 53.3 2.3 25 365-389 30-54 (263)
453 2bbs_A Cystic fibrosis transme 89.1 0.14 4.9E-06 54.2 2.2 28 362-389 61-88 (290)
454 2orv_A Thymidine kinase; TP4A 89.1 0.97 3.3E-05 46.6 8.3 69 365-436 19-102 (234)
455 2npi_A Protein CLP1; CLP1-PCF1 88.9 0.2 6.8E-06 56.6 3.3 29 361-389 134-162 (460)
456 3clv_A RAB5 protein, putative; 88.9 0.26 8.8E-06 46.9 3.7 24 365-388 7-30 (208)
457 2y8e_A RAB-protein 6, GH09086P 88.9 0.21 7.1E-06 46.7 3.0 22 367-388 16-37 (179)
458 1z0f_A RAB14, member RAS oncog 88.8 0.23 7.8E-06 46.4 3.2 24 366-389 16-39 (179)
459 3fht_A ATP-dependent RNA helic 88.7 0.57 2E-05 50.2 6.7 54 328-383 24-82 (412)
460 4dsu_A GTPase KRAS, isoform 2B 88.7 0.24 8.1E-06 46.9 3.2 23 367-389 6-28 (189)
461 2a9k_A RAS-related protein RAL 88.6 0.24 8.3E-06 46.6 3.2 23 366-388 19-41 (187)
462 3t1o_A Gliding protein MGLA; G 88.6 0.24 8.4E-06 47.1 3.3 23 367-389 16-38 (198)
463 2fn4_A P23, RAS-related protei 88.6 0.23 7.7E-06 46.6 3.0 23 366-388 10-32 (181)
464 3con_A GTPase NRAS; structural 88.5 0.24 8.3E-06 47.3 3.2 23 367-389 23-45 (190)
465 3fmo_B ATP-dependent RNA helic 88.5 0.76 2.6E-05 48.4 7.4 53 328-382 91-148 (300)
466 2p5s_A RAS and EF-hand domain 88.5 0.25 8.4E-06 47.9 3.3 25 364-388 27-51 (199)
467 2oil_A CATX-8, RAS-related pro 88.5 0.24 8.3E-06 47.4 3.2 23 366-388 26-48 (193)
468 2efe_B Small GTP-binding prote 88.4 0.25 8.5E-06 46.5 3.2 23 366-388 13-35 (181)
469 1gm5_A RECG; helicase, replica 88.4 1.2 4.1E-05 53.5 9.8 37 363-399 387-426 (780)
470 2wsm_A Hydrogenase expression/ 88.4 0.24 8.3E-06 48.7 3.2 25 365-389 30-54 (221)
471 1m7b_A RND3/RHOE small GTP-bin 88.4 0.23 8E-06 47.4 3.0 23 366-388 8-30 (184)
472 2bme_A RAB4A, RAS-related prot 88.3 0.23 8E-06 47.0 2.9 23 366-388 11-33 (186)
473 3l9o_A ATP-dependent RNA helic 88.2 0.83 2.8E-05 57.0 8.5 34 366-399 200-236 (1108)
474 3fmp_B ATP-dependent RNA helic 88.2 0.58 2E-05 52.0 6.5 54 328-383 91-149 (479)
475 2db3_A ATP-dependent RNA helic 88.2 1.4 4.6E-05 48.7 9.4 53 327-381 54-109 (434)
476 3bwd_D RAC-like GTP-binding pr 88.1 0.33 1.1E-05 45.6 3.8 24 365-388 8-31 (182)
477 2g6b_A RAS-related protein RAB 88.0 0.28 9.5E-06 46.1 3.2 23 366-388 11-33 (180)
478 3tw8_B RAS-related protein RAB 88.0 0.24 8.4E-06 46.3 2.9 23 366-388 10-32 (181)
479 3iby_A Ferrous iron transport 88.0 0.44 1.5E-05 49.2 5.0 22 367-388 3-24 (256)
480 3ux8_A Excinuclease ABC, A sub 88.0 0.53 1.8E-05 55.4 6.3 24 362-385 345-368 (670)
481 2b6h_A ADP-ribosylation factor 88.0 0.3 1E-05 47.3 3.5 25 363-387 27-51 (192)
482 2cxx_A Probable GTP-binding pr 88.0 0.22 7.4E-06 47.3 2.4 22 367-388 3-24 (190)
483 2vp4_A Deoxynucleoside kinase; 87.9 0.3 1E-05 49.2 3.6 24 365-388 20-43 (230)
484 2e87_A Hypothetical protein PH 87.9 2.3 7.8E-05 45.8 10.8 25 364-388 166-190 (357)
485 1mh1_A RAC1; GTP-binding, GTPa 87.9 0.28 9.7E-06 46.2 3.2 22 367-388 7-28 (186)
486 1moz_A ARL1, ADP-ribosylation 87.9 0.24 8.3E-06 46.7 2.8 25 363-387 16-40 (183)
487 2hf9_A Probable hydrogenase ni 87.9 0.29 9.9E-06 48.4 3.4 25 365-389 38-62 (226)
488 1m2o_B GTP-binding protein SAR 87.9 0.29 9.8E-06 47.3 3.3 23 366-388 24-46 (190)
489 3kkq_A RAS-related protein M-R 87.8 0.29 9.8E-06 46.3 3.2 23 366-388 19-41 (183)
490 3a1s_A Iron(II) transport prot 87.8 0.37 1.3E-05 49.8 4.3 22 367-388 7-28 (258)
491 1ksh_A ARF-like protein 2; sma 87.8 0.24 8.2E-06 47.1 2.6 25 364-388 17-41 (186)
492 2gf9_A RAS-related protein RAB 87.8 0.29 9.9E-06 46.8 3.2 22 367-388 24-45 (189)
493 3fho_A ATP-dependent RNA helic 87.6 0.83 2.8E-05 51.6 7.4 20 365-384 158-177 (508)
494 2qag_B Septin-6, protein NEDD5 87.6 0.28 9.6E-06 54.9 3.5 27 362-388 37-65 (427)
495 4ag6_A VIRB4 ATPase, type IV s 87.6 0.46 1.6E-05 51.8 5.1 25 364-388 34-58 (392)
496 3ld9_A DTMP kinase, thymidylat 87.6 0.31 1.1E-05 49.8 3.5 32 364-395 20-55 (223)
497 3tkl_A RAS-related protein RAB 87.6 0.3 1E-05 46.6 3.2 23 366-388 17-39 (196)
498 3ch4_B Pmkase, phosphomevalona 87.6 0.48 1.6E-05 47.8 4.8 40 362-401 8-48 (202)
499 2iwr_A Centaurin gamma 1; ANK 87.5 0.24 8.3E-06 46.6 2.5 23 366-388 8-30 (178)
500 3pqc_A Probable GTP-binding pr 87.5 0.31 1E-05 46.3 3.2 23 366-388 24-46 (195)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=9.4e-82 Score=715.81 Aligned_cols=446 Identities=48% Similarity=0.761 Sum_probs=379.7
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~ 405 (794)
.+.++|+||+|++++|++|++++.++++|..|..+|.++|+|+||+||||||||+||+++|+++++||+.++++++.+.|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 003806 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (794)
Q Consensus 406 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (794)
+|.+..+++.+|..|+..+||||||||+|.++..++... .+.+++..+++++|+.+|+++..+.+++||++||+++.||
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~-~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL-GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc-CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 999999999999999999999999999999998776432 3456788899999999999988888999999999999999
Q ss_pred ccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccH
Q 003806 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (794)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~ 565 (794)
++++||||||+.+.++.|+.++|.+|++.|+++. ++.+++++..++..++||+++||.++|++|++.|.+++...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC--CCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecH
Confidence 9999999999999999999999999999999764 56678899999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhcccchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCCCccccc
Q 003806 566 IDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLL 645 (794)
Q Consensus 566 ~d~~~Al~rvi~g~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~ 645 (794)
+||.+|+++++.|.+++...+++++++.+||||+|||+++ +.+|+.+++++++|+||+.+++||+++.|.+|++++
T Consensus 247 ~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~----~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~ 322 (476)
T 2ce7_A 247 KDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVS----TVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLV 322 (476)
T ss_dssp HHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHH----HHSTTCCCCCEEECC-----------------CCSC
T ss_pred HHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHh----hccCCccccceeeeecCcccccceEEEcCccccccc
Confidence 9999999999999988888899999999999999999986 578999999999999996489999999999999999
Q ss_pred cHHHHHHHHHHhhhhHHHHHHHcCCccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCCCC-CCC-CCCCCCCC
Q 003806 646 FIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGG-IDE-SGGGVPWG 723 (794)
Q Consensus 646 ~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~-~~~-~~~~~~~~ 723 (794)
|+.+|+++|+++|||||||+++| |++||||+|||++||+||+.||++||||+++|++++....+.. +.. .....+|+
T Consensus 323 ~~~~l~~~i~~~l~Gr~ae~~~~-g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s 401 (476)
T 2ce7_A 323 SRNELLDKLTALLGGRAAEEVVF-GDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYS 401 (476)
T ss_dssp BHHHHHHHHHHHTHHHHHHHHHH-SSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSC
T ss_pred CHHHHHHHHHHHHhHHHHHhhhc-CCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCcccccccccccccccc
Confidence 99999999999999999999999 6999999999999999999999999999999999987543210 000 00112343
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHhhhh
Q 003806 724 RDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLSLSY 782 (794)
Q Consensus 724 ~~~~~~~~~id~Ev~~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~l~~ 782 (794)
++++..||+||+++|++||++|++||++|++.|++||++|+|+||| ++++..+|..
T Consensus 402 ---~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 402 ---EEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 4667899999999999999999999999999999999999999999 8888888864
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=2.4e-78 Score=691.47 Aligned_cols=447 Identities=45% Similarity=0.702 Sum_probs=404.9
Q ss_pred ccccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 321 ~~~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
++....+.++|+||+|++++|+++++++.+++++..|..++.+.|+|+||+||||||||+||+++|++++.+|+.+++++
T Consensus 20 ~~~~~~~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~ 99 (499)
T 2dhr_A 20 RVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 99 (499)
T ss_dssp EEECSCCCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eeeccCCCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhH
Confidence 33333389999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+.+.++|.+..+++.+|+.++...|||+||||||.++..++... ...+++..+++++++.+|+++..+..+++|++||+
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~-~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~ 178 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 178 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST-TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSC
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc-CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCC
Confidence 99999999999999999999888999999999999987765321 23467788999999999999988888999999999
Q ss_pred CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCC
Q 003806 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (794)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~ 560 (794)
|+.||++++||||||+++.+++|+.++|.+||+.|+++ .++.+++++..+|..++|++|+||+++|++|+..|.++++
T Consensus 179 p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~ 256 (499)
T 2dhr_A 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 256 (499)
T ss_dssp GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999864 4677889999999999999999999999999999998888
Q ss_pred ccccHHHHHHHHHHHhcccchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCC-
Q 003806 561 VVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPAN- 639 (794)
Q Consensus 561 ~~It~~d~~~Al~rvi~g~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~- 639 (794)
..|+++||.+|+++++.+.++++..+++++++.+||||+|||+++ +++++.++|++++|+|| ++++||++ |.
T Consensus 257 ~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~----~~l~~~~~v~~~~i~pr-~~~~g~~~--p~q 329 (499)
T 2dhr_A 257 RKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAA----HFLEHADGVHKVTIVPR-GRALGFMM--PRR 329 (499)
T ss_dssp SSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHH----CCSSSCCCCCCEESCCS-SCTTCSSH--HHH
T ss_pred CccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHH----hhcCCCCeeeEEEeecC-CCcCcccc--cch
Confidence 899999999999999999988888999999999999999999986 57889999999999999 57999998 55
Q ss_pred CccccccHHHHHHHHHHhhhhHHHHHHHcCCccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCCCCCCCCCCC
Q 003806 640 EDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGG 719 (794)
Q Consensus 640 ~~~~~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~ 719 (794)
++++++|+.+|+++|+++|||||||+++| |++||||+|||++||+||+.||++||||+++|++++....+..+.... .
T Consensus 330 ~~~~~~t~~~l~~~i~~~lgGr~ae~~~~-g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~-~ 407 (499)
T 2dhr_A 330 EDMLHWSRKRLLDQIAVALAGRAAEEIVF-DDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYD-V 407 (499)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHHHS-CSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCC-C
T ss_pred hhhhccCHHHHHHHHHHHhhhHhHHHhhh-cccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCcccccccc-c
Confidence 78899999999999999999999999999 699999999999999999999999999999999998754321111011 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHhhhh
Q 003806 720 VPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLSLSY 782 (794)
Q Consensus 720 ~~~~~~~~~~~~~id~Ev~~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~l~~ 782 (794)
.+|+ ++++..||+||+++|++||++|++||++|++.|++||++|+|+||| ++++..+|..
T Consensus 408 ~~~s---~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 468 (499)
T 2dhr_A 408 RQYS---EETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEG 468 (499)
T ss_dssp CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTT
T ss_pred cccC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 2343 4667899999999999999999999999999999999999999999 8888888864
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-52 Score=462.04 Aligned_cols=254 Identities=38% Similarity=0.650 Sum_probs=239.7
Q ss_pred cccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
..++.|+++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|+++++||+.+++++
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 34667999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+.++|+|.++..++++|..|+..+||||||||||++++.|.... .+.+.+..+++++||++||++....+|+||+|||+
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred hhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCC-CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC
Confidence 99999999999999999999999999999999999998875432 34456778899999999999999999999999999
Q ss_pred CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCC
Q 003806 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (794)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~ 560 (794)
|+.|||||+||||||+.|+|++|+.++|.+||+.|+++ .++..++|++.+|+.|+||||+||+++|++|++.|.++++
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~ 374 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK--MNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR 374 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999976 4667899999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcc
Q 003806 561 VVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 561 ~~It~~d~~~Al~rvi~g 578 (794)
..|+++||..|+++++..
T Consensus 375 ~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 375 IHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp SBCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCc
Confidence 999999999999998754
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-51 Score=452.89 Aligned_cols=254 Identities=40% Similarity=0.666 Sum_probs=239.4
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++++|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 4677999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
.++|+|.++..++.+|..|+..+||||||||+|+++..|.... ...+.+..+++++||++||++....+|+||+|||+|
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCC-CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 9999999999999999999999999999999999998886532 234567788999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCc
Q 003806 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (794)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~ 561 (794)
+.|||||+||||||++|+|++||.++|.+||+.|+++. ++.+++|++.+|..|+||||+||+++|++|++.|.++++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~--~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~ 409 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM--NLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM 409 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS--CBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC--CCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999764 6678999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhccc
Q 003806 562 VVEKIDFIHAVERSIAGI 579 (794)
Q Consensus 562 ~It~~d~~~Al~rvi~g~ 579 (794)
.|+++||.+|+++++.+.
T Consensus 410 ~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 410 QVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp CBCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCCC
Confidence 999999999999987653
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-50 Score=455.63 Aligned_cols=258 Identities=41% Similarity=0.670 Sum_probs=241.8
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
.++.|+|+|+||+|++++|++|++.|.+ +++|+.|..+|+++|+|+|||||||||||+||+|+|+++++||+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 3567999999999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
.++|+|.+++.++.+|..|+..+||||||||+|+++..|.... .+.......+++++|.+||++....+|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcC-CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc
Confidence 9999999999999999999999999999999999998886532 344567788999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCc
Q 003806 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (794)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~ 561 (794)
+.|||||+||||||++|+|++|+.++|.+||+.|+++ +++..+++++.||+.|+||||+||+++|++|++.|.++++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT--SCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999976 46678899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcccchhh
Q 003806 562 VVEKIDFIHAVERSIAGIEKKT 583 (794)
Q Consensus 562 ~It~~d~~~Al~rvi~g~e~k~ 583 (794)
.|+++||..|+++++.|.++++
T Consensus 437 ~it~~Df~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 437 VATEKDFLKAVDKVISGYKKFS 458 (467)
T ss_dssp SBCHHHHHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHhcCcccch
Confidence 9999999999999998876543
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-50 Score=448.42 Aligned_cols=253 Identities=41% Similarity=0.650 Sum_probs=237.2
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 4567999999999999999999987666 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
.++|+|.+++.++.+|..|+..+||||||||+|+++..|.... ..+..+...++++||++||++....+|+||||||+|
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999998886532 334567788999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCc
Q 003806 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (794)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~ 561 (794)
+.|||||+||||||++|+|++|+.++|.+||+.|+++. ++..++|++.+|+.|+||||+||+++|++|++.|.++++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~ 408 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM--TTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS 408 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS--CBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC--CCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999874 5678899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcc
Q 003806 562 VVEKIDFIHAVERSIAG 578 (794)
Q Consensus 562 ~It~~d~~~Al~rvi~g 578 (794)
.|+++||.+|++++...
T Consensus 409 ~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 409 SVKHEDFVEGISEVQAR 425 (434)
T ss_dssp SBCHHHHHHHHHSCSSS
T ss_pred CcCHHHHHHHHHHHhCC
Confidence 99999999999887543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-49 Score=446.48 Aligned_cols=253 Identities=42% Similarity=0.670 Sum_probs=238.0
Q ss_pred cccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||+||+|+|+++++||+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 34567899999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+.++|+|.++..++.+|..|+..+||||||||+|+++..|.... ...+.+...++++||.+||++....+|+||+|||+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred hccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC-CCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999998885432 23456778899999999999999999999999999
Q ss_pred CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCC
Q 003806 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (794)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~ 560 (794)
|+.|||||+||||||++|+|++|+.++|.+||+.|+++. ++..++|++.+|+.|+||||+||.++|++|++.|.++++
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV--KKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS--CBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC--CCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999764 567889999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhc
Q 003806 561 VVVEKIDFIHAVERSIA 577 (794)
Q Consensus 561 ~~It~~d~~~Al~rvi~ 577 (794)
..|+++||..|++++..
T Consensus 408 ~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVAE 424 (437)
T ss_dssp SSBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-49 Score=440.02 Aligned_cols=252 Identities=44% Similarity=0.654 Sum_probs=236.5
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 3567899999999999999999998886 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
.++|+|.++..++++|..|+..+||||||||+|+++..|.... ...+.+..+++++||++|||+....+|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC-CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 9999999999999999999999999999999999998885432 334567788999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEee-cCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCC
Q 003806 482 DVLDPALRRPGRFDRVVMVE-TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (794)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~-~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~ 560 (794)
+.|||||+||||||+.|+++ +|+.++|.+||+.|+++. ++.+++|++.+|..|+||||+||+++|++|++.|.++++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~--~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM--SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS--CBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC--CCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999996 899999999999999764 567889999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhc
Q 003806 561 VVVEKIDFIHAVERSIA 577 (794)
Q Consensus 561 ~~It~~d~~~Al~rvi~ 577 (794)
..|+++||.+|+.+++.
T Consensus 400 ~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVK 416 (428)
T ss_dssp SSBCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhhC
Confidence 99999999999988763
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.6e-46 Score=441.73 Aligned_cols=282 Identities=37% Similarity=0.684 Sum_probs=209.9
Q ss_pred CcCcHHHHHHHHHHHHHHHHHHhhccc-ccccc-------------cCccc--cccCCCCCCCccccCCCCcccccccCC
Q 003806 274 SGGFLNSALIALFYVAVLAGLLHRFPV-SFSQT-------------AGQVG--HRKTRGPGGAKVSEQGDTITFADVAGV 337 (794)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~--~~~~~~~~~~~~~~~~~~vtf~DV~G~ 337 (794)
++||.+.+|..++-.+.+..+.+.... ..... ...+. .....++.......+.|+++|+|+.|+
T Consensus 403 T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl 482 (806)
T 3cf2_A 403 THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGL 482 (806)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCH
Confidence 678999999999888877766543211 00000 00000 001112222233455688999999999
Q ss_pred hHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHH
Q 003806 338 DEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDL 416 (794)
Q Consensus 338 devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~l 416 (794)
+++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+++|++++.||+.++++++.++|+|.+++.++++
T Consensus 483 ~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~l 562 (806)
T 3cf2_A 483 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562 (806)
T ss_dssp HHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHH
Confidence 9999999999988 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccce
Q 003806 417 FARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (794)
Q Consensus 417 F~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr 496 (794)
|+.|+..+||||||||||+++..|+... ...+....+++++||.+||++....+|+||||||+|+.||+|++||||||+
T Consensus 563 F~~Ar~~~P~IifiDEiDsl~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~ 641 (806)
T 3cf2_A 563 FDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ 641 (806)
T ss_dssp HHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCC
T ss_pred HHHHHHcCCceeechhhhHHhhccCCCC-CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceE
Confidence 9999999999999999999998886421 123455678999999999999999999999999999999999999999999
Q ss_pred EEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
+|+|++|+.++|.+||+.|+++. ++..++|++.||+.|+||||+||+++|++|++.|.++
T Consensus 642 ~i~v~lPd~~~R~~il~~~l~~~--~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 642 LIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp EEEC-----CHHHHTTTTTSSCC----CCC----------------CHHHHHHHHHHHHHHH
T ss_pred EEEECCcCHHHHHHHHHHHhcCC--CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999764 6678899999999999999999999999999999875
No 10
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2.8e-45 Score=380.60 Aligned_cols=199 Identities=30% Similarity=0.452 Sum_probs=151.9
Q ss_pred hcccchhhhhcccchhhHHHHhhccceeeehhhhhhCCCCCCccceeeecCCccccceEeecCCCccccccHHHHHHHHH
Q 003806 576 IAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLV 655 (794)
Q Consensus 576 i~g~e~k~~~ls~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i~ 655 (794)
++|+++++..+++++|+++||||||||||+ +++|+.+||+||||+|| |+++|||++.|.+|++++|+++|+++|+
T Consensus 1 ~~G~ekk~~~~s~~ek~~vAyHEAGHAlva----~~l~~~~pV~KVTIiPR-G~alG~t~~~P~ed~~~~tk~~l~~~i~ 75 (238)
T 2di4_A 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMG----LVSDDDDKVHKISIIPR-GMALGVTQQLPIEDKHIYDKKDLYNKIL 75 (238)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHH----HHCSSCCCCCCEECC-----------------CCCCBHHHHHHHHH
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHH----HHcCCCCceeEEEEeec-CCcceEEEeCCcccccccCHHHHHHHHH
Confidence 468899999999999999999999999997 57899999999999999 5799999999988999999999999999
Q ss_pred HhhhhHHHHHHHcC-CccccchhhHHHHHHHHHHHHHHHhCCCCCCCcceecccCCCCCCCCCCCCCCCCChhHHHHHHH
Q 003806 656 TLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQ 734 (794)
Q Consensus 656 ~~LgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 734 (794)
++|||||||+++|| |++||||+|||++||+||+.||++||||+++||++|....+..+.......+|+ ++++..||
T Consensus 76 v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~S---e~ta~~iD 152 (238)
T 2di4_A 76 VLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTS---PDLLREID 152 (238)
T ss_dssp HHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCC---HHHHHHHH
T ss_pred HHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccC---HHHHHHHH
Confidence 99999999999996 589999999999999999999999999999999998753321111001123444 45678999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhH-HHHHHHhhhh
Q 003806 735 REVKALLQSALEVALCVVRANPDVLEGLGACLEGNYVT-ANLVSLSLSY 782 (794)
Q Consensus 735 ~Ev~~~l~~a~~~A~~iL~~~r~~L~~la~~L~e~e~l-~~~~~~~l~~ 782 (794)
.||++||++||++|++||++|++.|++||++|+|+||| ++++..+|..
T Consensus 153 ~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~ 201 (238)
T 2di4_A 153 EEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKL 201 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHcc
Confidence 99999999999999999999999999999999999999 8888888764
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-41 Score=404.94 Aligned_cols=247 Identities=43% Similarity=0.680 Sum_probs=228.2
Q ss_pred CCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
..+.++|+||+|++++|++|++++.+ +++|+.|..+|.++|+|||||||||||||+|||++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
+|.|.++..++.+|+.|+.++||||||||||.|+++++.. .++...+++++|+.+||++..+.+|+||+|||+++.
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC----CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999887643 334557899999999999998899999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC----
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN---- 559 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~---- 559 (794)
||++|+||||||+.|+++.|+.++|.+||+.|+++ .++..++|+..+|..|+||+++||.++|++|++.|.++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~--~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS--SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC--CCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999865 466789999999999999999999999999999987652
Q ss_pred -------------CccccHHHHHHHHHHHhc
Q 003806 560 -------------KVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 560 -------------~~~It~~d~~~Al~rvi~ 577 (794)
...|+++||..|+..+..
T Consensus 431 ~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp GGTCCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred cccccccchhhhccceeeHHHHHHHHHhCCC
Confidence 134778899999977654
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=4.4e-38 Score=327.38 Aligned_cols=253 Identities=62% Similarity=0.951 Sum_probs=228.0
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
+..+..+|+||+|++++|++|.+++.++.++..|..++.+.|+++||+||||||||++|+++|++++.|++.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
.+.|.+...++.+|+.+....||++||||+|.++..++... .+...+..+.+++++..++++..+.+++||++||+++.
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS-CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc-CCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 99999999999999999999999999999999988765432 23445667889999999999888889999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~I 563 (794)
+|++++|+|||++.+.++.|+.++|.+|++.++++. ++.+++++..++..++||+++||.++|++|+..|.+++...|
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~--~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i 240 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV--PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 240 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999998764 566788899999999999999999999999999999998999
Q ss_pred cHHHHHHHHHHHhccc
Q 003806 564 EKIDFIHAVERSIAGI 579 (794)
Q Consensus 564 t~~d~~~Al~rvi~g~ 579 (794)
+.+||.+|++++..|+
T Consensus 241 ~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 241 SMVEFEKAKDKIMMGL 256 (257)
T ss_dssp CHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHhcCC
Confidence 9999999999988765
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=8.3e-39 Score=331.25 Aligned_cols=261 Identities=50% Similarity=0.781 Sum_probs=208.1
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhh
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~v 406 (794)
|+++|+|++|++++|+.|++++.+++.++.|..+|...|+++||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCc
Q 003806 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (794)
Q Consensus 407 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDp 486 (794)
+.+...++.+|..+....|+||||||+|.+...+........+.+....++.++..+++.....+++||++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88889999999999999999999999999987664322222344556788999999998877789999999999999999
Q ss_pred cccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHH
Q 003806 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (794)
Q Consensus 487 ALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~ 566 (794)
+++|+|||++.++++.|+.++|.+|++.++...++....+.....++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999988765554444568899999999999999999999999998888999999
Q ss_pred HHHHHHHHHhcccchhhhhcc
Q 003806 567 DFIHAVERSIAGIEKKTAKLK 587 (794)
Q Consensus 567 d~~~Al~rvi~g~e~k~~~ls 587 (794)
||..|++++..+..++...++
T Consensus 241 d~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp CHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhccChhhhhHhhc
Confidence 999999999888776655444
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=337.19 Aligned_cols=250 Identities=41% Similarity=0.671 Sum_probs=209.6
Q ss_pred CCCCcccccccCChHhHHHHHHHH-HHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 325 QGDTITFADVAGVDEAKEELEEIV-EFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV-~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
+.|.++|+||+|++++|++|++.+ ..+.+++.|..++..+|+|++|+||||||||+|++++|++++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 357899999999999999999854 5589999999999999999999999999999999999999999999999999988
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
.+.+.....++.+|+.++...|||+|+||+|.+...++.. ......+.+++++.+|++......++++++||+|+.
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~----~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~ 158 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR----ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 158 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC----cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhh
Confidence 8888888999999999999999999999999987654321 112234578999999999988889999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC-CCCCccccchhHHhhhc--CCCCHHHHHHHHHHHHHHHHhh--
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-ELPLAKDIDLGDIASMT--TGFTGADLANLVNEAALLAGRL-- 558 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~-~l~l~~dvdl~~LA~~t--~GfSgaDL~~Lv~eAal~A~r~-- 558 (794)
||++++||||||+.|++++|+.++|.+||+.++++. ..++..+++++.+|..+ .||||+||.++|++|+..|.++
T Consensus 159 LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998652 34566789999999875 5999999999999999999865
Q ss_pred ---------CCccccHHHHHHHHHHHhcc
Q 003806 559 ---------NKVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 559 ---------~~~~It~~d~~~Al~rvi~g 578 (794)
+...|+++||++|+.++...
T Consensus 239 ~~~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 239 ARQKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp -----------CCBCHHHHHHHHTTCCCC
T ss_pred hhccccccccCCeecHHHHHHHHHHhcCC
Confidence 23469999999999876543
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.5e-37 Score=331.01 Aligned_cols=250 Identities=40% Similarity=0.744 Sum_probs=221.0
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+.|.++|+||+|++++|+.|.+.+.. +++|+.|..+|..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 456889999999999999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
+.+.|.....++.+|..|+...||||||||+|.+...++.... .......+++++++..|+++....+++||+|||+++
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTC-CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcC-CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 9999999999999999999999999999999999877643211 111223467889999999988888999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC---
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 559 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~--- 559 (794)
.||++++|||||++.++++.|+.++|.+|++.++++. ++..+++++.++..+.||+|+||.++|++|+..|.++.
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~--~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC--CCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999765 34578899999999999999999999999999887542
Q ss_pred ----------------------CccccHHHHHHHHHHHh
Q 003806 560 ----------------------KVVVEKIDFIHAVERSI 576 (794)
Q Consensus 560 ----------------------~~~It~~d~~~Al~rvi 576 (794)
...|+++||..|+.++-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 244 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp HC--------------------CCCBCHHHHHHHHTTCC
T ss_pred hhhhhhhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 13578888888886543
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6e-36 Score=314.79 Aligned_cols=251 Identities=47% Similarity=0.776 Sum_probs=230.4
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
...|.++|+|++|++++++.|.+.+.. +..++.|..+|..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 345789999999999999999998876 8899999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
..+.|.....++.+|..++...|+||||||+|.+...+.... .....+....+..++..++++....+++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL-TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSC-CGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcccc-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 999999999999999999999999999999999987765432 2345567788999999999888888999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (794)
.+|++++|++||++.+.++.|+.++|.+|++.++... .+..++++..++..+.|++++||.++|++|...|.+++...
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~ 245 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM--NLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 245 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999998764 44567789999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 003806 563 VEKIDFIHAVERSIA 577 (794)
Q Consensus 563 It~~d~~~Al~rvi~ 577 (794)
|+.+|+.+|++++..
T Consensus 246 I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 246 VTMDDFRKAVEKIME 260 (285)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998864
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.2e-36 Score=322.95 Aligned_cols=227 Identities=37% Similarity=0.635 Sum_probs=202.8
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-CCcEEEEecchh
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEF 401 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-gvpfi~is~se~ 401 (794)
.+.|.++|+||+|++++|+.|++.+.+ ++.|+.|.. +..+|+++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 356789999999999999999998876 778877663 45778999999999999999999999999 899999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-CCCcEEEEEEcCC
Q 003806 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNR 480 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-~~~~VIVIaATN~ 480 (794)
...|.|.....++.+|..++...||||||||+|.+...++.. ......+.+++++..|+++. ...+++||+|||+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 999999999999999999999999999999999998877542 34456788999999999886 3578999999999
Q ss_pred CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
|+.||++++| ||++.+++++|+.++|.+|++.++.+....+ .+.+++.+++.|.||||+||.++|++|++.|.++
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999998754433 4568999999999999999999999999888764
No 18
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=4.2e-35 Score=304.39 Aligned_cols=246 Identities=59% Similarity=0.937 Sum_probs=220.4
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
...|.++|+|++|+++++.++++++..+..+..+..++...|+|++|+||||||||+|++++|++++.+++.+++.++.+
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
.+.+.....+..+|+.+....|+++||||+|.++..+... .....++..+.+++++.+|++......++++++||+|+.
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~-~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc-ccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 8888888889999999988889999999999998765421 112355677889999999999888788999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~I 563 (794)
||++++|+|||++.+.++.|+.++|.+|++.+++. .++.+++++..++..++|++++||.++|++|+..|.+++...|
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I 244 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 244 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999998864 4667888999999999999999999999999999998888899
Q ss_pred cHHHHHHHH
Q 003806 564 EKIDFIHAV 572 (794)
Q Consensus 564 t~~d~~~Al 572 (794)
+.+|+.+|+
T Consensus 245 ~~~dl~~a~ 253 (254)
T 1ixz_A 245 TMKDLEEAA 253 (254)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999999885
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.5e-35 Score=319.99 Aligned_cols=229 Identities=37% Similarity=0.617 Sum_probs=199.8
Q ss_pred cccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
+..+.|+++|+||+|++++|+.|.+.+.+ ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34567889999999999999999998876 666666554 6678899999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-CCCcEEEEEEcC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATN 479 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-~~~~VIVIaATN 479 (794)
+...|.|.....++.+|..++...||||||||||.+...++.. .........++++..|+++. ...+++||+|||
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC----cchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 9999999999999999999999999999999999998776432 22334577889999999874 557899999999
Q ss_pred CCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
+++.||++++| ||+..+++++|+.++|.+|++.++.+....+ .+.+++.++..+.||+++||.++|++|+..|.++
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999998765433 4568999999999999999999999999888775
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=5.2e-37 Score=320.50 Aligned_cols=253 Identities=62% Similarity=0.952 Sum_probs=218.8
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
...+.++|+|++|++++++.|.+++.++..++.|..++.+.|+++||+||||||||++|+++|++++.||+.++++++.+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCC-CcEEEEEEcCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSD 482 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~-~~VIVIaATN~pd 482 (794)
.+.|.+...++.+|+.+....|+||||||+|.+...+........+.+..+.+++++..+++.... .+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 888888888889999999999999999999999876532211112223345678889889877543 4599999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (794)
.+|++++|+|||+..+.++.|+.++|.+|++.++... ++..+++++.++..+.|++++||.++|++|+..|.+++...
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~ 240 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV--KLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKE 240 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS--CCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCS
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC--CCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999998653 45677889999999999999999999999999998888889
Q ss_pred ccHHHHHHHHHHHhcc
Q 003806 563 VEKIDFIHAVERSIAG 578 (794)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (794)
|+.+|+.+|+.++...
T Consensus 241 i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 241 VRQQHLKEAVERGIAG 256 (268)
T ss_dssp CCHHHHHTSCTTCCCC
T ss_pred cCHHHHHHHHHHHhhc
Confidence 9999999998765543
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.9e-34 Score=316.27 Aligned_cols=227 Identities=37% Similarity=0.620 Sum_probs=193.5
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
...+.++|+||+|++++|+.|.+.+.. ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 345789999999999999999998866 677777765 678889999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC-CCcEEEEEEcCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRS 481 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN~p 481 (794)
..|.|.....++.+|..++...||||||||+|.+...+... .......+.++|+..|+++.. ..+++||++||++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC----cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 99999999999999999999999999999999998776432 334556788999999998754 5689999999999
Q ss_pred CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
+.||++++| ||++.+++++|+.++|.+||+.++......+ .+.+++.|++.+.||+|+||.++|++|++.|.++
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998764433 4668999999999999999999999999998875
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.5e-33 Score=297.52 Aligned_cols=246 Identities=59% Similarity=0.937 Sum_probs=220.1
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
...+.++|+|++|++++++++++++..+..+..+..++...|+|++|+||||||||+|++++++.++.+++.+++.++.+
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34488999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
.+.+.....+..+|+.+....|+++|+||+|.++..+... ......+..+.+++++.+|++......++++++||+|+.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc-cCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 8888878889999999988889999999999998665421 112345667889999999999887778999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~I 563 (794)
||++++|++||++.+.++.|+.++|.+||+.+++. .++.+++++..++..++|++++||+++|++|+..|.+++...|
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I 268 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 268 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSB
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999998865 4667788999999999999999999999999999998888899
Q ss_pred cHHHHHHHH
Q 003806 564 EKIDFIHAV 572 (794)
Q Consensus 564 t~~d~~~Al 572 (794)
+.+|+.+|+
T Consensus 269 ~~~dl~~a~ 277 (278)
T 1iy2_A 269 TMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999999886
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.3e-33 Score=322.32 Aligned_cols=244 Identities=43% Similarity=0.680 Sum_probs=222.5
Q ss_pred CCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHh
Q 003806 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~ 405 (794)
+.++|++++|++++++.|.+.+.. +++|+.|..+|..+|+++||+||||||||++|+++|++++.||+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 568899999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 003806 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (794)
Q Consensus 406 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (794)
.|.....++.+|..|....||||||||||.+...++.. ..+....++++|+..|++.....+++||+|||+++.||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~----~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC----CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc----cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 99999999999999999999999999999999876532 34455788899999999888888999999999999999
Q ss_pred ccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCc----
Q 003806 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV---- 561 (794)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~---- 561 (794)
++++|+|||++.++++.|+.++|.+||+.++... ++..++++..++..+.||+++||.++|++|+..|.++...
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~--~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~ 432 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC--CCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999998754 5567788999999999999999999999999999886533
Q ss_pred -------------cccHHHHHHHHHHHh
Q 003806 562 -------------VVEKIDFIHAVERSI 576 (794)
Q Consensus 562 -------------~It~~d~~~Al~rvi 576 (794)
.|+++||..|+.++.
T Consensus 433 ~~~~~~~~~~~~~~vt~edf~~Al~~~~ 460 (489)
T 3hu3_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSN 460 (489)
T ss_dssp TCSSCCHHHHHHCCBCHHHHHHHHTSHH
T ss_pred cccccchhhcccCcCCHHHHHHHHHhCC
Confidence 478889998887654
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.8e-33 Score=315.82 Aligned_cols=228 Identities=37% Similarity=0.628 Sum_probs=192.1
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-CCcEEEEecch
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASE 400 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-gvpfi~is~se 400 (794)
....|.++|+||+|++++|+.|.+.+.. ++.|+.|.. +..+++++||+||||||||+||+++|.++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3456789999999999999999998765 667766653 45678999999999999999999999999 89999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC-CCcEEEEEEcC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATN 479 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN 479 (794)
+...|.|.....++.+|..++...||||||||||.+...+... ......+.+++||..|+++.. ..+++||+|||
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC----CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc----cccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 9999999999999999999999999999999999998776542 233456788999999998763 57899999999
Q ss_pred CCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 003806 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~ 558 (794)
+++.||++++| ||++.+.+++|+.++|.+|++.++.+....+ .+.+++.|+..+.||||+||.++|++|+..|.++
T Consensus 280 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 280 IPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999997754433 4568999999999999999999999999988764
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=6.2e-32 Score=286.15 Aligned_cols=244 Identities=39% Similarity=0.607 Sum_probs=205.9
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
...++++|+|++|++++++.|.+.+.. +.+|+.|..++ .+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345788999999999999999998766 56676666554 5688999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCC---CcEEEEEEcC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN---SAVIVLGATN 479 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~---~~VIVIaATN 479 (794)
..+.|.+...++.+|..+....|+||||||+|.+...++... .+......+.++..+++.... .+++||++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE----HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc----chHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 889999899999999999999999999999999987664321 122345677888888877543 5799999999
Q ss_pred CCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC
Q 003806 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (794)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~ 559 (794)
+++.+|++++| ||+..+.++.|+.++|..|++.++...+..+. +.+++.+++.+.|++++||.++|++|+..|.++.
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred ChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999987654443 3468889999999999999999999999998764
Q ss_pred ------------CccccHHHHHHHHHHH
Q 003806 560 ------------KVVVEKIDFIHAVERS 575 (794)
Q Consensus 560 ------------~~~It~~d~~~Al~rv 575 (794)
...|+.+||..|+.++
T Consensus 245 ~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 245 NVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp C--------CCCCCCCCHHHHHHHTTSC
T ss_pred hhhhcccccccccCCcCHHHHHHHHHHc
Confidence 2569999999998654
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.1e-31 Score=291.94 Aligned_cols=245 Identities=35% Similarity=0.576 Sum_probs=209.7
Q ss_pred CCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
.++++|+|++|++++++.|.+.+.. +..++.|...+ .+++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 4678999999999999999998876 67777665554 678999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC--CCcEEEEEEcCCCC
Q 003806 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNRSD 482 (794)
Q Consensus 405 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--~~~VIVIaATN~pd 482 (794)
+.|.....++.+|..++...|+||||||||.+...++. +.+....+.+++++..+++... ..+++||+|||+++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999876643 2344556788999999997653 46899999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC---
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 559 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~--- 559 (794)
.||++++| ||+..+.++.|+.++|.+|++.++...+..+. +.+++.+++.+.||+++||.++|++|...+.++.
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~ 309 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS-EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA 309 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 99999999999999999999999987655544 3478899999999999999999999998887742
Q ss_pred ---------CccccHHHHHHHHHHHhcc
Q 003806 560 ---------KVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 560 ---------~~~It~~d~~~Al~rvi~g 578 (794)
...|+.+||..|+.++...
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 310 DIATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp ---------CCCBCHHHHHHHHHHHGGG
T ss_pred hhccccccccCCcCHHHHHHHHHhcCCC
Confidence 3579999999999887543
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=288.97 Aligned_cols=245 Identities=40% Similarity=0.619 Sum_probs=200.5
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
...+.++|+||+|++++++.|.+.+.. +..++.|..++ .+++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 345778999999999999999998766 45566665555 5678999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC--CCcEEEEEEcCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNR 480 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--~~~VIVIaATN~ 480 (794)
..|.|.....++.+|..++...|+||||||||.+...+... .........+.|+..|++... ...++||+|||+
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG----EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc----cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 99999999999999999999999999999999997765432 233456778889999887654 467999999999
Q ss_pred CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhh--
Q 003806 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL-- 558 (794)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~-- 558 (794)
++.||++++| ||+..++++.|+.++|.+|++.++...+..+.++ ++..++..+.|+++++|..+++.|...+.++
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~-~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHH-HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 9999999999999999999999998776655544 6889999999999999999999999998876
Q ss_pred ----------CCccccHHHHHHHHHHHh
Q 003806 559 ----------NKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 559 ----------~~~~It~~d~~~Al~rvi 576 (794)
....|+.+||..++.+..
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHcC
Confidence 345789999999997653
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.1e-33 Score=340.26 Aligned_cols=233 Identities=42% Similarity=0.790 Sum_probs=205.2
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
...+.++|+|++|++++|+.|.+.+.+ ++.+..|..++..+++++||+||||||||+||+++|++++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 456789999999999999999998876 6778888889999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 003806 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (794)
+.|+|..+..++.+|+.++...||||||||||.+...+++.. ........+++++||.+||++....+++||+|||+++
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~ 627 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCC-SHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCC-CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcc
Confidence 999999999999999999999999999999999988775431 1223456789999999999998888999999999999
Q ss_pred CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhC
Q 003806 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (794)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~ 559 (794)
.||++++|||||++.|+++.|+.++|.+||+.++++. ++..+++++.+++.+.|||++||.++|++|+..|.++.
T Consensus 628 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~--~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC--CCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999764 56688899999999999999999999999999998764
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=7.7e-31 Score=280.27 Aligned_cols=229 Identities=17% Similarity=0.190 Sum_probs=160.4
Q ss_pred hCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHH----HhcCCEEEEEcccch
Q 003806 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA----KKEAPSIIFIDEIDA 435 (794)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A----r~~aP~ILfIDEIDa 435 (794)
.+.++|+++||+||||||||+||+++|++++.+|+.++++++.+.|+|.....++++|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred hhhccCCCccccchHHHHHHHHHHHHhhcCCC-----------CCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCC
Q 003806 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (794)
Q Consensus 436 L~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (794)
+...+++.. ........+.+.|+..||+.. ...+++||+|||+++.||++++||||||+.+. .|+
T Consensus 111 ~~~~~~~~~--~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~ 186 (293)
T 3t15_A 111 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 186 (293)
T ss_dssp ---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCC
T ss_pred hcCCCCCCc--cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcC
Confidence 987554211 111123345577777776332 45679999999999999999999999999886 589
Q ss_pred HHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHH-------HHHHHHHHhhCCccccHHHHHHHHHHHhc
Q 003806 505 KIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV-------NEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 505 ~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv-------~eAal~A~r~~~~~It~~d~~~Al~rvi~ 577 (794)
.++|.+|++.++.. .+++.+.++..+.||++++|..+- .++.....++. ..+.+.. +.+.
T Consensus 187 ~~~r~~Il~~~~~~------~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~----g~~~~~~---~~~~ 253 (293)
T 3t15_A 187 REDRIGVCTGIFRT------DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGT----GIEKIGD---KLLN 253 (293)
T ss_dssp HHHHHHHHHHHHGG------GCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHT----CSTTCHH---HHTS
T ss_pred HHHHHHHHHHhccC------CCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHh----CHHHHHH---HHHc
Confidence 99999999988864 356788999999999999886431 11111100000 0011111 1111
Q ss_pred ccchhhhhcccchhhHHHHhhccceeeeh
Q 003806 578 GIEKKTAKLKGSEKAVVARHEAGHAVVGT 606 (794)
Q Consensus 578 g~e~k~~~ls~~ek~~iA~HEaGHAvv~~ 606 (794)
+. .....+.+.+..+.++||+||++++.
T Consensus 254 ~~-~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 254 SF-DGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp CS-SCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CC-CCCCCCCCccccHHHHHHHHHHHHHH
Confidence 11 12234455677888999999999863
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=1.5e-27 Score=287.18 Aligned_cols=245 Identities=44% Similarity=0.682 Sum_probs=218.9
Q ss_pred CCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
..+.++|+||+|++++++.|.+.+.. +++|+.|..+++.++.++||+||||||||+||+++|++++.+++.++++++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 44679999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 003806 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (794)
.+.+.....++.+|+.+....|+++||||+|.+...++. ...+...+.+++++..+++...+..+++|++||+++.
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 899999999999999999999999999999999877643 2334556788999999999988889999999999999
Q ss_pred CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCc--
Q 003806 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV-- 561 (794)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~-- 561 (794)
+|+++.++|||++.+.++.|+.++|.+|++.++.+ +.+..+.++..++..+.||+++++..++++|+..+.++...
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i 430 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT--SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhc--CCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999865 35567788999999999999999999999999888765332
Q ss_pred ---------------cccHHHHHHHHHHH
Q 003806 562 ---------------VVEKIDFIHAVERS 575 (794)
Q Consensus 562 ---------------~It~~d~~~Al~rv 575 (794)
.++.+|+..++...
T Consensus 431 ~~~~~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp SCHHHHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred chhhhccchhhhhhhhhhhhhhhcccccc
Confidence 35566777777654
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=1.4e-26 Score=261.67 Aligned_cols=206 Identities=21% Similarity=0.263 Sum_probs=146.8
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecchhHH
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~se~~~ 403 (794)
.|...|++++|++++++.+.+++..++. +..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3567799999999999999998876543 556789999999999999999999999999 9999999999999
Q ss_pred HhhccchHHHHHHHHHH---HhcCCEEEEEcccchhhhccCCCccccchHHHH---------------HHHHHHHHhhc-
Q 003806 404 LYVGMGASRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE---------------QTLNQLLTEMD- 464 (794)
Q Consensus 404 ~~vG~~~~~vr~lF~~A---r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~---------------~~Ln~LL~emd- 464 (794)
.+.|..+. ++++|..| +...||||||||+|.++..++.....+...... +..++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 788999999999999998775431111110001 11233555554
Q ss_pred -CCCCCCcEEEEEEcCCCCCCCccccCCCccce--EEEeecC--CHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCC
Q 003806 465 -GFDSNSAVIVLGATNRSDVLDPALRRPGRFDR--VVMVETP--DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (794)
Q Consensus 465 -g~~~~~~VIVIaATN~pd~LDpALlRpGRFdr--~I~v~~P--d~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~Gf 539 (794)
+......++|++|||+++.+|+++.||||||+ .+.++.| +.++|.+|++.+.. .+++.++..+.|
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~---------~dl~~~a~~t~g- 252 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL---------HDLDVANARPQG- 252 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH---------HHHHHTC------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH---------HHHHHHHHhCCC-
Confidence 33444456667999999999999999999999 5677777 45788888765542 268899999999
Q ss_pred CHHHHHHHHHH
Q 003806 540 TGADLANLVNE 550 (794)
Q Consensus 540 SgaDL~~Lv~e 550 (794)
|+||.++|+.
T Consensus 253 -gadl~~l~~~ 262 (456)
T 2c9o_A 253 -GQDILSMMGQ 262 (456)
T ss_dssp -----------
T ss_pred -hhHHHHHHhh
Confidence 9999999965
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.89 E-value=2.2e-22 Score=218.60 Aligned_cols=249 Identities=19% Similarity=0.264 Sum_probs=173.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecchhHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVEL 404 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~se~~~~ 404 (794)
|..+|++++|.+++++.+..+...+.. +..+++++||+||||||||++|+++|.+++ .||+.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 456699999999999998888776654 334568999999999999999999999987 48999987663321
Q ss_pred h-------------------------------------------------hccchHHHHHHHHHHHh---------cCCE
Q 003806 405 Y-------------------------------------------------VGMGASRVRDLFARAKK---------EAPS 426 (794)
Q Consensus 405 ~-------------------------------------------------vG~~~~~vr~lF~~Ar~---------~aP~ 426 (794)
+ .|.....++..|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 1 12224556666665543 1278
Q ss_pred EEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc-----------CCCCCCCccccCCCccc
Q 003806 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT-----------NRSDVLDPALRRPGRFD 495 (794)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT-----------N~pd~LDpALlRpGRFd 495 (794)
||||||+|.+.. ...+.|+..++... ..++++++. |.+..++++|++ ||.
T Consensus 192 vl~IDEi~~l~~---------------~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 192 VLFIDEVHMLDI---------------ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp EEEEESGGGSBH---------------HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred eEEEhhccccCh---------------HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 999999998742 34466666665332 345555554 357889999998 887
Q ss_pred eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 003806 496 RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (794)
Q Consensus 496 r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (794)
. +.+++|+.+++.+|++.++...+..+.++ .++.+++.+.+.+++++.++++.|+..|..++...|+.+|+.+|+...
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~-~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSED-AYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5 89999999999999999998776666554 478889988855999999999999999999999999999999999764
Q ss_pred hcccchhhhhcccchhhHHHHhhccceeee
Q 003806 576 IAGIEKKTAKLKGSEKAVVARHEAGHAVVG 605 (794)
Q Consensus 576 i~g~e~k~~~ls~~ek~~iA~HEaGHAvv~ 605 (794)
+. ..+....+.+.+++ ..++|.++--..
T Consensus 331 ~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 358 (368)
T 3uk6_A 331 LD-ESRSTQYMKEYQDA-FLFNELKGETMD 358 (368)
T ss_dssp BC-HHHHHHHHC------------------
T ss_pred cC-HHHHHHHHHHhhhh-hhhhcCCccccc
Confidence 32 22222333444444 447777776543
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=7.4e-23 Score=217.13 Aligned_cols=225 Identities=18% Similarity=0.277 Sum_probs=172.3
Q ss_pred cc-cccCChHhHHHHHHHHHHhcChhHHhhhCCCC---CCeEEEEcCCCChHHHHHHHHHHhc-------CCcEEEEecc
Q 003806 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 399 (794)
Q Consensus 331 f~-DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkALA~el-------gvpfi~is~s 399 (794)
++ +++|++++|+.|.+++..+..+..+...|... +.++||+||||||||++|+++|+++ ..+++.++++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 44 79999999999999999877677777777554 4569999999999999999999987 3499999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
++...+.|.....+..+|..+ .++||||||+|.+...++.. +.....++.|+..|+.. ..+++||++||
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~------~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~ 177 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER------DYGQEAIEILLQVMENN--RDDLVVILAGY 177 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHHC--TTTCEEEEEEC
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc------cccHHHHHHHHHHHhcC--CCCEEEEEeCC
Confidence 999888998888899999887 46799999999998654321 11245677788887743 35678889998
Q ss_pred CCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhh-------cCCCCHHHHHHH
Q 003806 480 RSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANL 547 (794)
Q Consensus 480 ~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~-------t~GfSgaDL~~L 547 (794)
.++ .++|+|++ ||+..+.++.|+.+++.+|++.++...+..+.++ .+..++.. ....+++++.++
T Consensus 178 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~~~gn~r~l~~~ 254 (309)
T 3syl_A 178 ADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE-AETALRAYIGLRRNQPHFANARSIRNA 254 (309)
T ss_dssp HHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHH-HHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 653 35799998 9999999999999999999999998876655443 34555554 333368999999
Q ss_pred HHHHHHHHHhh----CCccccHHHHH
Q 003806 548 VNEAALLAGRL----NKVVVEKIDFI 569 (794)
Q Consensus 548 v~eAal~A~r~----~~~~It~~d~~ 569 (794)
++.|...+..+ ....++.+++.
T Consensus 255 l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 255 LDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99998766543 23445555443
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=1.1e-20 Score=203.30 Aligned_cols=216 Identities=19% Similarity=0.225 Sum_probs=168.3
Q ss_pred CCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
...+.+|++++|.+++++.+.+.+...+. ...++.++||+||||||||++|+++|.+++.+|+.++++.+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc--
Confidence 33456899999999999999888765432 234567899999999999999999999999999999987652
Q ss_pred hhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC----------------C
Q 003806 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------S 468 (794)
Q Consensus 405 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------------~ 468 (794)
....+...+.. ...+++|||||||.+... ..+.|+..++... .
T Consensus 93 ----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~---------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 93 ----KSGDLAAILTN--LSEGDILFIDEIHRLSPA---------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp ----SHHHHHHHHHT--CCTTCEEEEETGGGCCHH---------------HHHHHHHHHHTSCC---------CCCCCCC
T ss_pred ----chhHHHHHHHh--ccCCCEEEEechhhcCHH---------------HHHHHHHHHHhccchhhcccCccccceecC
Confidence 23344444433 346789999999988522 2334444444321 0
Q ss_pred CCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHH
Q 003806 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (794)
Q Consensus 469 ~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv 548 (794)
..++++|++||+...++++|++ ||+..+.++.|+.+++.++++.++...+..+.++ .++.++..+.| +.+++.+++
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l 227 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEK-AALEIAKRSRS-TPRIALRLL 227 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHH-HHHHHHHTTTT-CHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHCc-CHHHHHHHH
Confidence 1248999999999999999998 9999999999999999999999998765544333 46777886666 789999999
Q ss_pred HHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 549 NEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 549 ~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
+.+...|...+...|+.+++..++..
T Consensus 228 ~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 228 KRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 99988888888888999999998876
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=4.7e-20 Score=194.56 Aligned_cols=237 Identities=24% Similarity=0.325 Sum_probs=163.5
Q ss_pred ccccCChHhHHHHHHHHHH-hcChhHHhh-hCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-Hhhcc
Q 003806 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIR-LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGM 408 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~-Lk~p~~~~~-lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-~~vG~ 408 (794)
++|+|++++++.+...+.. +..+..... .....|.++||+||||||||++|+++|..++.+++.++++++.+ .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4599999999999877654 111110000 11246788999999999999999999999999999999998865 45554
Q ss_pred c-hHHHHHHHHHH-----HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--------CCCcEEE
Q 003806 409 G-ASRVRDLFARA-----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIV 474 (794)
Q Consensus 409 ~-~~~vr~lF~~A-----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIV 474 (794)
. ...+++++..+ ....++||||||+|.+....... +.+.....+.+.|+..+++.. ...++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~---~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS---GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC---SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc---ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 3 34566666533 11236799999999998665321 223333445677777777531 2346788
Q ss_pred EEE----cCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHH-----------HhcCCC--CCccccchhHHhhhcC
Q 003806 475 LGA----TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH-----------VSKKEL--PLAKDIDLGDIASMTT 537 (794)
Q Consensus 475 IaA----TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~-----------l~~~~l--~l~~dvdl~~LA~~t~ 537 (794)
|++ ++.+..+++++++ ||+..+.+++|+.+++.+|++.. +...+. .++++ .++.+++.+.
T Consensus 172 i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~ 248 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD-AVKKIAEAAF 248 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHH-HHHHHHHHHH
T ss_pred EEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHH-HHHHHHHHhh
Confidence 888 4577889999997 99989999999999999999831 112222 22222 3566666652
Q ss_pred -------CCCHHHHHHHHHHHHHHHHh-----hCC-ccccHHHHHHHHHH
Q 003806 538 -------GFTGADLANLVNEAALLAGR-----LNK-VVVEKIDFIHAVER 574 (794)
Q Consensus 538 -------GfSgaDL~~Lv~eAal~A~r-----~~~-~~It~~d~~~Al~r 574 (794)
+.+.+++.++++.+...+.. .+. ..|+.+++.+++..
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 45889999999987644332 122 24899998888754
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.82 E-value=9e-20 Score=194.42 Aligned_cols=219 Identities=21% Similarity=0.272 Sum_probs=164.1
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhh
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~v 406 (794)
.+.+|++++|.+++++.+.+.+..... ....+.++||+||||||||++|++++.+++.+|+.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 445899999999999999888765432 1235678999999999999999999999999999999876522
Q ss_pred ccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc-----CCC--------CCCcEE
Q 003806 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----GFD--------SNSAVI 473 (794)
Q Consensus 407 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd-----g~~--------~~~~VI 473 (794)
...+...|..+ ...+++|||||+|.+... ....+..++.... +.. ...+++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQ------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCHH------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccccc------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 22232333221 245789999999987522 1122333333321 000 113578
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHH
Q 003806 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (794)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal 553 (794)
+|++||.+..++++|.+ ||+..+.++.|+.+++.++++.++...+..+.++ .++.++..+.| +++++.++++.+..
T Consensus 141 ~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE-AALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred EEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 99999999999999987 9988999999999999999999998766655443 46778888876 68999999999988
Q ss_pred HHHhhCCccccHHHHHHHHHHH
Q 003806 554 LAGRLNKVVVEKIDFIHAVERS 575 (794)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~rv 575 (794)
.|...+...|+.+++..++...
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh
Confidence 8776677789999998887653
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.82 E-value=5.3e-21 Score=220.94 Aligned_cols=226 Identities=22% Similarity=0.309 Sum_probs=153.3
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH----
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---- 403 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~---- 403 (794)
..-.+|++|++++++.+.+.+...... ... ++..+||+||||||||+||+++|+.++.++..++++.+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 345688999999999998765432110 111 4668999999999999999999999999999999887544
Q ss_pred -----HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCC---------
Q 003806 404 -----LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN--------- 469 (794)
Q Consensus 404 -----~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~--------- 469 (794)
.|+|.....+...|..+....| ||||||||.+...+++ ...+.|+..||.....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-----------~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-----------DPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-----------CHHHHHHHHHhhhhcceeecccCCe
Confidence 5677777788888888877777 9999999999765432 1345667777643211
Q ss_pred ----CcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc-----CCC-----CCccccchhHHhh-
Q 003806 470 ----SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIAS- 534 (794)
Q Consensus 470 ----~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~-----~~l-----~l~~dvdl~~LA~- 534 (794)
.+++||+|||+++.++++|++ ||+ .|.++.|+.+++.+|++.++.. .++ .+.++ .+..++.
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~-~l~~l~~~ 294 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQ-AILDIIRY 294 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHH-HHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHH-HHHHHHHh
Confidence 568999999999999999999 996 7999999999999999988732 222 11122 2444444
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHh----h--CCccccHHHHHHHHHHH
Q 003806 535 MTTGFTGADLANLVNEAALLAGR----L--NKVVVEKIDFIHAVERS 575 (794)
Q Consensus 535 ~t~GfSgaDL~~Lv~eAal~A~r----~--~~~~It~~d~~~Al~rv 575 (794)
.+.....++|++.+..++..|.. . +...|+.+++.+++...
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 44434557776666655554433 2 34579999999988543
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.81 E-value=2e-19 Score=188.49 Aligned_cols=225 Identities=20% Similarity=0.251 Sum_probs=151.1
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH-HHhhccc
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV-ELYVGMG 409 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~-~~~vG~~ 409 (794)
...++|.++..+.+.+....+. ..+...+..++.++||+||||||||++|+++|.+++.||+.+++++.. ....+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4568888887666665322221 112233456788999999999999999999999999999999887521 1111222
Q ss_pred hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-CCCcEEEEEEcCCCCCCCc-c
Q 003806 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDP-A 487 (794)
Q Consensus 410 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-~~~~VIVIaATN~pd~LDp-A 487 (794)
...++.+|..+....++||||||+|.+...+... .......++.|...+++.. ....++||+|||.++.+++ .
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhh
Confidence 3567889999888889999999999997554321 1112345566666666554 3457889999999988887 4
Q ss_pred ccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCC----CHHHHHHHHHHHHHHHHhhCCccc
Q 003806 488 LRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF----TGADLANLVNEAALLAGRLNKVVV 563 (794)
Q Consensus 488 LlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~Gf----SgaDL~~Lv~eAal~A~r~~~~~I 563 (794)
+.+ ||+..+.++ +..+|.+|.+....... + .+.++..+++.+.|+ +.+++.++++.|...+ ...
T Consensus 185 l~~--rf~~~i~~p--~l~~r~~i~~i~~~~~~--~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~ 252 (272)
T 1d2n_A 185 MLN--AFSTTIHVP--NIATGEQLLEALELLGN--F-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEY 252 (272)
T ss_dssp CTT--TSSEEEECC--CEEEHHHHHHHHHHHTC--S-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGG
T ss_pred hhc--ccceEEcCC--CccHHHHHHHHHHhcCC--C-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHH
Confidence 444 998887764 44555666655544332 2 334578889988887 6777777777664332 334
Q ss_pred cHHHHHHHHHH
Q 003806 564 EKIDFIHAVER 574 (794)
Q Consensus 564 t~~d~~~Al~r 574 (794)
..+++..+++.
T Consensus 253 ~~~~~~~~l~~ 263 (272)
T 1d2n_A 253 RVRKFLALLRE 263 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 39
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=2.2e-20 Score=210.24 Aligned_cols=169 Identities=24% Similarity=0.296 Sum_probs=80.8
Q ss_pred ccccCChHhHHHHHHHHHH-hcChhHHhhhCC-CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH-Hhhcc
Q 003806 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGM 408 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~-~~vG~ 408 (794)
++|+|++++|+.|...+.. ++.+..+..+.. .+|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999887744 333333333333 35789999999999999999999999999999999999988 59995
Q ss_pred -chHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE-cCCCCCCCc
Q 003806 409 -GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA-TNRSDVLDP 486 (794)
Q Consensus 409 -~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA-TN~pd~LDp 486 (794)
.+..++.+|..|... +++||+|.+.... ......+++++|+.+||++.....+ +++ ||+++.||+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 789999999999875 3589988875332 2234468999999999999776554 455 999999999
Q ss_pred cccCCCccceEEEeecCCHH-hHHHHHH
Q 003806 487 ALRRPGRFDRVVMVETPDKI-GREAILK 513 (794)
Q Consensus 487 ALlRpGRFdr~I~v~~Pd~~-eR~eILk 513 (794)
+|+||||||+.|+++.|+.. .|.+|+.
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ----------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 99999999999999999987 6777764
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=7e-19 Score=192.36 Aligned_cols=221 Identities=24% Similarity=0.307 Sum_probs=150.4
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHh---hhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH-hhcc
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYI---RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGM 408 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~---~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~-~vG~ 408 (794)
.|+|++++++.+...+.......... .....++.++||+||||||||++|+++|..++.||+.++++++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999988774321111100 0112367889999999999999999999999999999999988753 7776
Q ss_pred c-hHHHHHHHHHH----HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC----------------
Q 003806 409 G-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------------- 467 (794)
Q Consensus 409 ~-~~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------------- 467 (794)
. ...++.+|..+ ....+|||||||+|.+...+.... ...+.....+.+.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~-~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS-ITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc-cccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 5 56677787766 345678999999999987764321 2233334457888998888431
Q ss_pred ---CCCcEEEEEEcCCC----------CC-----------------------------------CCccccCCCccceEEE
Q 003806 468 ---SNSAVIVLGATNRS----------DV-----------------------------------LDPALRRPGRFDRVVM 499 (794)
Q Consensus 468 ---~~~~VIVIaATN~p----------d~-----------------------------------LDpALlRpGRFdr~I~ 499 (794)
...++++|+++|.. .. ++|+|+. ||+..+.
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~ 252 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVAT 252 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEE
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeee
Confidence 12345566666542 11 6788886 9999999
Q ss_pred eecCCHHhHHHHHHH----HHh-------cCCCC--CccccchhHHhh--hcCCCCHHHHHHHHHHHHHHHHh
Q 003806 500 VETPDKIGREAILKV----HVS-------KKELP--LAKDIDLGDIAS--MTTGFTGADLANLVNEAALLAGR 557 (794)
Q Consensus 500 v~~Pd~~eR~eILk~----~l~-------~~~l~--l~~dvdl~~LA~--~t~GfSgaDL~~Lv~eAal~A~r 557 (794)
+.+|+.+++.+|+.. ++. ..+.. +.++ .++.|+. ....+..++|+++++++...+..
T Consensus 253 ~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~-a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~ 324 (363)
T 3hws_A 253 LNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDE-ALDAIAKKAMARKTGARGLRSIVEAALLDTMY 324 (363)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHH-HHHHHHHhhcCCccCchHHHHHHHHHHHHHHH
Confidence 999999999999886 221 11211 1111 2455554 34555668888888887766543
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.78 E-value=4.7e-18 Score=183.90 Aligned_cols=227 Identities=20% Similarity=0.220 Sum_probs=164.7
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEec
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSA 398 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~ 398 (794)
...+++++|.++..+.+.+.+.... ....+.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3455899999998887776553221 13456789999999999999999999988 889999998
Q ss_pred chhHH------H----------hhccchHH-HHHHHHHHHh-cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHH
Q 003806 399 SEFVE------L----------YVGMGASR-VRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (794)
Q Consensus 399 se~~~------~----------~vG~~~~~-vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (794)
....+ . ..|..... +..++..... ..|+||||||+|.+...+ .....+..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~ 156 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRIT 156 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHh
Confidence 75321 1 01222233 3444444433 348899999999986432 1235677777
Q ss_pred HhhcCCCCCCcEEEEEEcCCC---CCCCccccCCCccce-EEEeecCCHHhHHHHHHHHHhc--CCCCCccccchhHHhh
Q 003806 461 TEMDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDIAS 534 (794)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~p---d~LDpALlRpGRFdr-~I~v~~Pd~~eR~eILk~~l~~--~~l~l~~dvdl~~LA~ 534 (794)
..++......++++|++||.+ +.+++++.+ ||.. .+.+++|+.+++.+|++.++.. .+..+.++ .++.+++
T Consensus 157 ~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~ 233 (387)
T 2v1u_A 157 RINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAA 233 (387)
T ss_dssp HGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHH
T ss_pred hchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 777644324678999999987 778999988 8864 8999999999999999998864 22333333 3666777
Q ss_pred hcC---CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 003806 535 MTT---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 535 ~t~---GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (794)
.+. | .++.+.++++.|...|..++...|+.+|+..|+.+..
T Consensus 234 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 234 LAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 776 6 6899999999999999888888999999999998763
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.78 E-value=1.3e-18 Score=196.12 Aligned_cols=223 Identities=17% Similarity=0.251 Sum_probs=155.4
Q ss_pred CCccccccc-CChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecch
Q 003806 327 DTITFADVA-GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (794)
Q Consensus 327 ~~vtf~DV~-G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se 400 (794)
+..+|++++ |..... .+..+......+ .. +.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 100 ~~~tfd~fv~g~~n~~-a~~~~~~~a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSF-AYHAALEVAKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp TTCSGGGCCCCTTTHH-HHHHHHHHHHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCChhhcCCCCchHH-HHHHHHHHHhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 556899988 644322 222222222222 12 6689999999999999999999988 89999999998
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+...+.+.........|.......|+||||||+|.+...+ ...+.+..++..+ ......+||++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~----------~~q~~l~~~l~~l---~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT----------GVQTELFHTFNEL---HDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH----------HHHHHHHHHHHHH---HTTTCEEEEEESSC
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh----------HHHHHHHHHHHHH---HHCCCeEEEEECCC
Confidence 8765543322222223444333368899999999986321 1111222222222 12344566665555
Q ss_pred CCC---CCccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 481 pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
+.. ++++|++ ||+ ..+.+++|+.++|.+|++.++...++.+++++ ++.++..+.| +.+++.++++.+...|
T Consensus 238 ~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 554 7899998 886 78999999999999999999987666666654 7888988876 8999999999999888
Q ss_pred HhhCCccccHHHHHHHHHHHh
Q 003806 556 GRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi 576 (794)
...+. .|+.+++.+++....
T Consensus 314 ~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSSS-CCCHHHHHHHTSTTT
T ss_pred HHhCC-CCCHHHHHHHHHHHh
Confidence 76554 699999999886543
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.77 E-value=2.3e-18 Score=194.54 Aligned_cols=209 Identities=24% Similarity=0.313 Sum_probs=155.3
Q ss_pred CCCCcccccccCChHhH---HHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 325 QGDTITFADVAGVDEAK---EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK---~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
...+.+|++++|+++++ ..|...+..- .+.++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~- 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT- 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-
Confidence 34457899999999998 5555555321 1257999999999999999999999999999998743
Q ss_pred HHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 003806 402 VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (794)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (794)
.+...++.+|..+.. ..++||||||||.+....+ +.|+..++. ..+++|++
T Consensus 86 ------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q---------------~~LL~~le~----~~v~lI~a 140 (447)
T 3pvs_A 86 ------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ---------------DAFLPHIED----GTITFIGA 140 (447)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHT----TSCEEEEE
T ss_pred ------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH---------------HHHHHHHhc----CceEEEec
Confidence 345567777777653 4688999999999864432 335555552 34677776
Q ss_pred c--CCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC-------CCCCccccchhHHhhhcCCCCHHHHHHHH
Q 003806 478 T--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-------ELPLAKDIDLGDIASMTTGFTGADLANLV 548 (794)
Q Consensus 478 T--N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~-------~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv 548 (794)
| |....++++|++ |+. ++.++.|+.+++.++++.++... ++.+.++ .++.++..+.| +.+++.+++
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~-al~~L~~~~~G-d~R~lln~L 215 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDE-TRRAIAELVNG-DARRALNTL 215 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHH-HHHHHHHHHCS-CHHHHHHHH
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHH-HHHHHHHHCCC-CHHHHHHHH
Confidence 6 444689999998 765 78899999999999999998762 2223322 46778888766 899999999
Q ss_pred HHHHHHHHhh--CCccccHHHHHHHHHHHh
Q 003806 549 NEAALLAGRL--NKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 549 ~eAal~A~r~--~~~~It~~d~~~Al~rvi 576 (794)
+.++..+... +...|+.+++.+++.+..
T Consensus 216 e~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 216 EMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred HHHHHhcccccCCCCccCHHHHHHHHhhhh
Confidence 9998887533 557899999999886543
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.3e-17 Score=165.14 Aligned_cols=203 Identities=24% Similarity=0.252 Sum_probs=148.8
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecch
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se 400 (794)
.++.+|++++|.+++++.|.+.+.. ..+.++||+||||||||++|++++.++ ..+++.++++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 4567899999999998888776642 123349999999999999999999875 46788888765
Q ss_pred hHHHhhccchHHHHHHHHHHH------hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 003806 401 FVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (794)
... ...+...+.... ...++||+|||+|.+... ..+.|+..++.. ..++.+
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~l~~~l~~~--~~~~~~ 135 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---------------AQAALRRTMEMY--SKSCRF 135 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH---------------HHHHHHHHHHHT--TTTEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH---------------HHHHHHHHHHhc--CCCCeE
Confidence 422 122333333322 246889999999987421 123344444432 346788
Q ss_pred EEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHH
Q 003806 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (794)
Q Consensus 475 IaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~ 554 (794)
|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...+..+.++ .++.++..+.| +.+.+.++++.++..
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~ 210 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAAI 210 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 8899999999999998 887 899999999999999999887665554443 46777887766 788888888877655
Q ss_pred HHhhCCccccHHHHHHHHH
Q 003806 555 AGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 555 A~r~~~~~It~~d~~~Al~ 573 (794)
+ ..|+.+|+.+++.
T Consensus 211 ~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 211 G-----EVVDADTIYQITA 224 (226)
T ss_dssp C-----SCBCHHHHHHHHH
T ss_pred C-----ceecHHHHHHHhc
Confidence 4 5899999998874
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=9.3e-18 Score=180.15 Aligned_cols=198 Identities=19% Similarity=0.255 Sum_probs=138.2
Q ss_pred CCccccccc-CCh--HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 003806 327 DTITFADVA-GVD--EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (794)
Q Consensus 327 ~~vtf~DV~-G~d--evK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se 400 (794)
+..+|++++ |.. .+...+..++ ..+ ...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~---~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEAL---ENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHH---HTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHH---hCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 567899997 533 3333333332 222 2346789999999999999999999988 89999999998
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
+...+.+.........|.... ..++||||||+|.+...+ ...+.+..++..+. .....+|+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~----------~~~~~l~~~l~~~~---~~~~~iii~~~~~ 141 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE----------RTQIEFFHIFNTLY---LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH----------HHHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred HHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh----------HHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 876655433222223333333 247899999999986321 11122222332221 2234677777777
Q ss_pred CC---CCCccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHH
Q 003806 481 SD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (794)
Q Consensus 481 pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~ 554 (794)
+. .++++|.+ ||+ ..+.+++ +.+++.+|++.++...++.+++++ ++.++..+ | +.+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~-l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEV-IDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHH-HHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 65 68999998 886 7889999 999999999999987777666553 78888888 5 789999999987765
No 46
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=3.7e-17 Score=177.78 Aligned_cols=216 Identities=21% Similarity=0.270 Sum_probs=157.8
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----------CCcEEEEe
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----------EVPFISCS 397 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----------gvpfi~is 397 (794)
...++++|.++..+.+.+.+..... ...|++++|+||||||||++|+++++++ +.+++.++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 3458999999999988887754322 2456789999999999999999999987 89999999
Q ss_pred cchhH-H----------Hh-------hccchHH-HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHH-HH
Q 003806 398 ASEFV-E----------LY-------VGMGASR-VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT-LN 457 (794)
Q Consensus 398 ~se~~-~----------~~-------vG~~~~~-vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~-Ln 457 (794)
|.... . .+ .+..... +..++..+... ++||||||+|.+..... ... +.
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~-----------~~~~l~ 156 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG-----------GDIVLY 156 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT-----------SHHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC-----------CceeHH
Confidence 87643 1 11 1111222 44444444443 44999999999975421 123 44
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCC---CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc--CCCCCccccchhHH
Q 003806 458 QLLTEMDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDI 532 (794)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~p---d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~--~~l~l~~dvdl~~L 532 (794)
.|+... .++.+|++||.+ +.+++++.+ ||...+.+++|+.++..+|++.++.. .+..+.++ .++.+
T Consensus 157 ~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~i 227 (384)
T 2qby_B 157 QLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDE-ILSYI 227 (384)
T ss_dssp HHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSH-HHHHH
T ss_pred HHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHH-HHHHH
Confidence 555433 578999999987 678999988 88779999999999999999998864 12233333 35667
Q ss_pred hhhcC---CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 003806 533 ASMTT---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 533 A~~t~---GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (794)
++.+. | +.+.+.++++.|...|. +...|+.+|+..|+++..
T Consensus 228 ~~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 228 AAISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 77776 5 67888899999988876 567899999999998764
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.75 E-value=1.5e-17 Score=167.99 Aligned_cols=207 Identities=16% Similarity=0.123 Sum_probs=142.0
Q ss_pred CCcccccccCCh---HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 003806 327 DTITFADVAGVD---EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (794)
Q Consensus 327 ~~vtf~DV~G~d---evK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se 400 (794)
+..+|++++|.+ ++.+.+..++. . ..+.+++|+||||||||++|++++.++ +.+++.+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 347899999833 33443333321 1 246789999999999999999999876 47899999988
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcE-EEEEEcC
Q 003806 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV-IVLGATN 479 (794)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V-IVIaATN 479 (794)
+...+... +. ....|++|||||+|.+.... .....+..++.... ....+ +|+++++
T Consensus 91 ~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~~----------~~~~~l~~~l~~~~---~~~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HASISTAL--------LE--GLEQFDLICIDDVDAVAGHP----------LWEEAIFDLYNRVA---EQKRGSLIVSASA 147 (242)
T ss_dssp GGGSCGGG--------GT--TGGGSSEEEEETGGGGTTCH----------HHHHHHHHHHHHHH---HHCSCEEEEEESS
T ss_pred HHHHHHHH--------HH--hccCCCEEEEeccccccCCH----------HHHHHHHHHHHHHH---HcCCCeEEEEcCC
Confidence 76533211 11 11346799999999885321 11122333333221 12233 5554544
Q ss_pred CCC---CCCccccCCCccc--eEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHH
Q 003806 480 RSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (794)
Q Consensus 480 ~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~ 554 (794)
.++ .+++++.+ ||. ..+.+++|+.+++.++++.++...+..+.++ .++.++..+.| +.+++.++++.+...
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPED-VGRFLLNRMAR-DLRTLFDVLDRLDKA 223 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHH-HHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 444 45688887 775 8999999999999999999998766655544 46778888876 899999999999988
Q ss_pred HHhhCCccccHHHHHHHHH
Q 003806 555 AGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 555 A~r~~~~~It~~d~~~Al~ 573 (794)
|...+ ..|+.+++.+++.
T Consensus 224 a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHT-CCCCHHHHHHHHT
T ss_pred HHHhC-CCCcHHHHHHHhh
Confidence 86554 5699999988873
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.75 E-value=1.7e-17 Score=178.41 Aligned_cols=220 Identities=19% Similarity=0.255 Sum_probs=142.0
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------c------
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------P------ 392 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------p------ 392 (794)
.++.+|++++|.+++++.+.... + . ..+.++||+||||||||++|+++|..++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-C---------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46688999999999877543221 1 1 12346999999999999999999998862 2
Q ss_pred --------------------EEEEecchhHHHhhccchHHHHHHHHHH---------HhcCCEEEEEcccchhhhccCCC
Q 003806 393 --------------------FISCSASEFVELYVGMGASRVRDLFARA---------KKEAPSIIFIDEIDAVAKSRDGR 443 (794)
Q Consensus 393 --------------------fi~is~se~~~~~vG~~~~~vr~lF~~A---------r~~aP~ILfIDEIDaL~~~r~~~ 443 (794)
++.+..+.......|.. .+...+..+ ....++||||||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~---- 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH---- 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH----
Confidence 22222111111122210 011122221 1123689999999987532
Q ss_pred ccccchHHHHHHHHHHHHhhcC----CCC-------CCcEEEEEEcCCCC-CCCccccCCCccceEEEeecC-CHHhHHH
Q 003806 444 FRIVSNDEREQTLNQLLTEMDG----FDS-------NSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETP-DKIGREA 510 (794)
Q Consensus 444 ~~~~~~~e~~~~Ln~LL~emdg----~~~-------~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~v~~P-d~~eR~e 510 (794)
..+.|+..|+. +.. ...+++|+|||..+ .++++|++ ||+.++.++.| +.+++.+
T Consensus 160 -----------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~ 226 (350)
T 1g8p_A 160 -----------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVE 226 (350)
T ss_dssp -----------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHH
T ss_pred -----------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHH
Confidence 22334443331 110 13689999999754 89999999 99988999999 6777778
Q ss_pred HHHHHHh-----------------------------cCCCCCccccchhHHhhhcCC---CCHHHHHHHHHHHHHHHHhh
Q 003806 511 ILKVHVS-----------------------------KKELPLAKDIDLGDIASMTTG---FTGADLANLVNEAALLAGRL 558 (794)
Q Consensus 511 ILk~~l~-----------------------------~~~l~l~~dvdl~~LA~~t~G---fSgaDL~~Lv~eAal~A~r~ 558 (794)
|++.++. ..++.++++ .++.++....+ -+.+.+.++++.|...|..+
T Consensus 227 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 227 VIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc
Confidence 8876321 112233332 24445444433 26799999999999999888
Q ss_pred CCccccHHHHHHHHHHHhc
Q 003806 559 NKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 559 ~~~~It~~d~~~Al~rvi~ 577 (794)
++..|+.+|+.+|+..++.
T Consensus 306 ~~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 306 GATAVGRDHLKRVATMALS 324 (350)
T ss_dssp TCSBCCHHHHHHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHh
Confidence 8889999999999987764
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.74 E-value=2e-17 Score=177.19 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=141.2
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.+...+.+|+|++|++++++.|.+.+. ..+.|..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 17 ~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~ 85 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK 85 (324)
T ss_dssp HHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC
T ss_pred HHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC
Confidence 344566789999999999998888775 235667789999999999999999999999999999987642
Q ss_pred HHhhccchHHHHHHHHHHHhc-----CCEEEEEcccchhh-hccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 003806 403 ELYVGMGASRVRDLFARAKKE-----APSIIFIDEIDAVA-KSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (794)
Q Consensus 403 ~~~vG~~~~~vr~lF~~Ar~~-----aP~ILfIDEIDaL~-~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (794)
...+++.+...... .++||||||+|.+. .. ..+.|+..++.. ..++.+|+
T Consensus 86 -------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~---------------~~~~L~~~le~~--~~~~~iI~ 141 (324)
T 3u61_B 86 -------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE---------------SQRHLRSFMEAY--SSNCSIII 141 (324)
T ss_dssp -------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH---------------HHHHHHHHHHHH--GGGCEEEE
T ss_pred -------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH---------------HHHHHHHHHHhC--CCCcEEEE
Confidence 34555555543332 57899999999985 21 123444444422 24578889
Q ss_pred EcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHH-------HhcCCCCCccccchhHHhhhcCCCCHHHHHHHHH
Q 003806 477 ATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH-------VSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (794)
Q Consensus 477 ATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~-------l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~ 549 (794)
+||.++.+++++++ ||. .+.++.|+.+++.+|++.+ +...++.+.+.-.++.++..+.| +.+++.+.++
T Consensus 142 ~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~ 217 (324)
T 3u61_B 142 TANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELD 217 (324)
T ss_dssp EESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHH
T ss_pred EeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 99999999999998 885 7999999999876665443 33344544441346777887665 5566666666
Q ss_pred HHHHHHHhhCCccccHHHHHHHHHH
Q 003806 550 EAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
.++ ....|+.+++..++..
T Consensus 218 ~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 218 SYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHG------GGTCBCC---------
T ss_pred HHh------ccCCCCHHHHHHHhCC
Confidence 554 2234888887776543
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.74 E-value=2.3e-17 Score=177.44 Aligned_cols=215 Identities=19% Similarity=0.149 Sum_probs=148.7
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh--HHHhhc
Q 003806 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF--VELYVG 407 (794)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~--~~~~vG 407 (794)
.+++++|++++++.+...+.. +.++||+||||||||++|+++|..++.+++.+++... .....|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 467899999998877665431 2479999999999999999999999999999887421 111222
Q ss_pred cchHH-HHHHHHHHHhcC---CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC---------CCCCcEEE
Q 003806 408 MGASR-VRDLFARAKKEA---PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVIV 474 (794)
Q Consensus 408 ~~~~~-vr~lF~~Ar~~a---P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~---------~~~~~VIV 474 (794)
..... ....|. .... .+||||||+|.+... ..+.|+..|+.. ....+++|
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~---------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK---------------VQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH---------------HHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCCHH---------------HHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 11000 000000 0112 369999999986422 234444444321 12346788
Q ss_pred EEEcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC----------------------CCCCcccc
Q 003806 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----------------------ELPLAKDI 527 (794)
Q Consensus 475 IaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----------------------~l~l~~dv 527 (794)
|+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.++... ++.+++++
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 88988554 38999998 999899999999999999999987642 12222221
Q ss_pred chhHHhh-------------------hcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcc
Q 003806 528 DLGDIAS-------------------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 528 dl~~LA~-------------------~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 578 (794)
++.++. ...|.|.+.+.++++.|...|..+++..|+.+|+.+++..++..
T Consensus 232 -~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 232 -EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp -HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 223322 11366999999999999999999999999999999999887643
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.73 E-value=6.6e-17 Score=161.46 Aligned_cols=204 Identities=21% Similarity=0.238 Sum_probs=149.1
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------------
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp------------- 392 (794)
..+.+|++++|.+++++.|.+.+.. .+.+..++|+||||||||++|++++++++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3456799999999999988877642 2345679999999999999999999876432
Q ss_pred -----------EEEEecchhHHHhhccchHHHHHHHHHHH----hcCCEEEEEcccchhhhccCCCccccchHHHHHHHH
Q 003806 393 -----------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (794)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (794)
++.+.... ......++.++..+. ...|++|+|||+|.+.. ..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~---------------~~~~ 144 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFN 144 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---------------HHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH---------------HHHH
Confidence 22222211 112334555555443 23578999999998732 2345
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcC
Q 003806 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (794)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (794)
.|+..++.. ..++++|++||.++.+++++.+ |+ ..+.+++|+.++..++++.++...+..+.++ .++.+++.+.
T Consensus 145 ~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~ 218 (250)
T 1njg_A 145 ALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAE 218 (250)
T ss_dssp HHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHT
T ss_pred HHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcC
Confidence 566666532 3578889999999999999987 64 5899999999999999999987765555443 4778889997
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 538 GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
| +++.+.++++.|...+ ...|+.+++.+++
T Consensus 219 G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 219 G-SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp T-CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred C-CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 7 8999999999885433 3479999998875
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=7.9e-18 Score=193.10 Aligned_cols=226 Identities=16% Similarity=0.206 Sum_probs=149.0
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcC--hhHHhhhCC---CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRS--PDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~--p~~~~~lg~---~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (794)
+...+.+|+|++|.+++++.|.+.+..... +..|...|. .+++++||+||||||||++|+++|++++.+++.+++
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 344567899999999999998887764221 112222333 367899999999999999999999999999999999
Q ss_pred chhHHHhhccc-------hHHHHHHHHHH-----HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC
Q 003806 399 SEFVELYVGMG-------ASRVRDLFARA-----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (794)
Q Consensus 399 se~~~~~vG~~-------~~~vr~lF~~A-----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 466 (794)
+++........ ...+..+|..+ ....++||||||+|.+.....+ .++.|+..++.
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~------------~l~~L~~~l~~- 177 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG------------GVGQLAQFCRK- 177 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT------------HHHHHHHHHHH-
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH------------HHHHHHHHHHh-
Confidence 87654321110 00122334433 2356889999999998653221 13344444432
Q ss_pred CCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHH
Q 003806 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 546 (794)
Q Consensus 467 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~ 546 (794)
.+..+++|+++.....++ .+. |+...+.+++|+.+++.+++...+...++.+.++ .++.+++.+.| +.+.+.+
T Consensus 178 -~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G-diR~~i~ 250 (516)
T 1sxj_A 178 -TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG-DIRQVIN 250 (516)
T ss_dssp -CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT-CHHHHHH
T ss_pred -cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-cHHHHHH
Confidence 223455555544434444 343 4567899999999999999998887766666655 47888888765 4555555
Q ss_pred HHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 547 LVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 547 Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
+++.++ . ....|+.+++.+++..
T Consensus 251 ~L~~~~---~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 251 LLSTIS---T--TTKTINHENINEISKA 273 (516)
T ss_dssp HHTHHH---H--HSSCCCTTHHHHHHHH
T ss_pred HHHHHH---h--cCCCCchHHHHHHHHh
Confidence 554432 2 3456888888777653
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.73 E-value=1.8e-16 Score=171.86 Aligned_cols=214 Identities=22% Similarity=0.300 Sum_probs=159.7
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhc
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG 407 (794)
..+|++++|.+.+++.+...+..-+. ...++..++|+||||||||+||+++|+++++++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~---- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK---- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS----
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC----
Confidence 44799999999988887766653221 1245678999999999999999999999999988877754421
Q ss_pred cchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC----------------CCCc
Q 003806 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNSA 471 (794)
Q Consensus 408 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------------~~~~ 471 (794)
...+..++.. ...++|+||||+|.+.+. ....+ +..++.+. .-..
T Consensus 90 --~~~l~~~~~~--~~~~~v~~iDE~~~l~~~------------~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 --QGDMAAILTS--LERGDVLFIDEIHRLNKA------------VEELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp --HHHHHHHHHH--CCTTCEEEEETGGGCCHH------------HHHHH---HHHHHTSCCCC---------------CC
T ss_pred --HHHHHHHHHH--ccCCCEEEEcchhhcCHH------------HHHHH---HHHHHhcccceeeccCcccccccccCCC
Confidence 1223333332 234679999999987531 11222 22222111 0124
Q ss_pred EEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHH
Q 003806 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (794)
Q Consensus 472 VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA 551 (794)
+.++++|+++..|++.+++ ||...+.+++|+.+++.+|++......+..+.++ .+..++..+.| +++.+.++++.+
T Consensus 151 ~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~-~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDA-AAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHhcCC-ChHHHHHHHHHH
Confidence 6778899999999999998 9998899999999999999999887666555444 37788998887 789999999999
Q ss_pred HHHHHhhCCccccHHHHHHHHHHH
Q 003806 552 ALLAGRLNKVVVEKIDFIHAVERS 575 (794)
Q Consensus 552 al~A~r~~~~~It~~d~~~Al~rv 575 (794)
...|..++...|+.+++.+|++..
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHh
Confidence 988888888889999999999875
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=1.7e-16 Score=171.30 Aligned_cols=226 Identities=19% Similarity=0.263 Sum_probs=160.1
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc------CCcEEEEecch
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------EVPFISCSASE 400 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el------gvpfi~is~se 400 (794)
+...+++++|.++..+.|.+.+.... ....+..++|+||||||||+|++++++++ +.+++.++|..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34456899999998887766543211 12456789999999999999999999988 89999999864
Q ss_pred hHH------Hh----------hccchHH-HHHHHHHHHhc-CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 401 FVE------LY----------VGMGASR-VRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 401 ~~~------~~----------vG~~~~~-vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
... .. .+..... ...++...... .|+||+|||+|.+....+. ..+..++..
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-----------~~l~~l~~~ 155 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-----------DILYKLSRI 155 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-----------THHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-----------HHHHHHhhc
Confidence 321 11 1111222 34444444443 3899999999998754311 245666666
Q ss_pred hcCCCCCCcEEEEEEcCCC---CCCCccccCCCccc-eEEEeecCCHHhHHHHHHHHHhcCC--CCCccccchhHHhhhc
Q 003806 463 MDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKKE--LPLAKDIDLGDIASMT 536 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~p---d~LDpALlRpGRFd-r~I~v~~Pd~~eR~eILk~~l~~~~--l~l~~dvdl~~LA~~t 536 (794)
++.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++.... ..+.++ .++.++..+
T Consensus 156 ~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~ 231 (386)
T 2qby_A 156 NSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDN-VIKLCAALA 231 (386)
T ss_dssp HHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHH-HHHHHHHHH
T ss_pred hhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 6544 34678889999877 467888877 664 5899999999999999998876321 222222 355666666
Q ss_pred C---CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 003806 537 T---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 537 ~---GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (794)
. | +++.+.++++.|...|..++...|+.+++..|+....
T Consensus 232 ~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 232 AREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 5 5 6888889999999999888888999999999998764
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=4.3e-17 Score=178.86 Aligned_cols=221 Identities=22% Similarity=0.290 Sum_probs=136.0
Q ss_pred cccCChHhHHHHHHHHHH-hcChhHH-----------------hhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 003806 333 DVAGVDEAKEELEEIVEF-LRSPDKY-----------------IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~-Lk~p~~~-----------------~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi 394 (794)
+|+|++++|+.|...+.. ++..... ......++.++||+||||||||++|+++|..++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999887632 1111100 0112345678999999999999999999999999999
Q ss_pred EEecchhH-HHhhccc-hHHHHHHHHHHH----hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-
Q 003806 395 SCSASEFV-ELYVGMG-ASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD- 467 (794)
Q Consensus 395 ~is~se~~-~~~vG~~-~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~- 467 (794)
.++++.+. ..|.|.. ...+..++..+. ...++||||||+|.+...+.+.. ...+...+...+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS-ITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------CHHHHHHHHHHHHCCEE
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc-eecccchHHHHHHHHHHhhccce
Confidence 99998875 3455543 344556655432 33578999999999987643211 0111112235677777777431
Q ss_pred ------------------CCCcEEEEEEcCCC-----------------------------------------CCCCccc
Q 003806 468 ------------------SNSAVIVLGATNRS-----------------------------------------DVLDPAL 488 (794)
Q Consensus 468 ------------------~~~~VIVIaATN~p-----------------------------------------d~LDpAL 488 (794)
...++++|+++|.. ..+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 11456788887721 1245666
Q ss_pred cCCCccceEEEeecCCHHhHHHHHHH----HHh-------cC--CCCCccccchhHHhhhcC--CCCHHHHHHHHHHHHH
Q 003806 489 RRPGRFDRVVMVETPDKIGREAILKV----HVS-------KK--ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAAL 553 (794)
Q Consensus 489 lRpGRFdr~I~v~~Pd~~eR~eILk~----~l~-------~~--~l~l~~dvdl~~LA~~t~--GfSgaDL~~Lv~eAal 553 (794)
++ ||+..+.+++++.++..+|+.. ++. .. .+.+.++ .++.++.... ....++|.++++.+..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE-AIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH-HHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 66 8988999999999999998862 111 11 1222222 2555666543 3467899999888877
Q ss_pred HHHh
Q 003806 554 LAGR 557 (794)
Q Consensus 554 ~A~r 557 (794)
.+..
T Consensus 338 ~~~~ 341 (376)
T 1um8_A 338 DIMF 341 (376)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=1.1e-16 Score=172.20 Aligned_cols=211 Identities=19% Similarity=0.167 Sum_probs=151.3
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC------CcEEEE
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------VPFISC 396 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg------vpfi~i 396 (794)
.+...+.+|++++|.+++++.|...+. . .+. .++||+||||||||++|+++|++++ ..++.+
T Consensus 28 ~~k~~p~~~~~i~g~~~~~~~l~~~l~---~--------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 95 (353)
T 1sxj_D 28 VEKYRPKNLDEVTAQDHAVTVLKKTLK---S--------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95 (353)
T ss_dssp HHHTCCSSTTTCCSCCTTHHHHHHHTT---C--------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCHHHhhCCHHHHHHHHHHHh---c--------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEE
Confidence 345567889999999999987766542 1 122 3499999999999999999998854 468888
Q ss_pred ecchhHHHhhccchHHHHHHHHHHH----------------hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHH
Q 003806 397 SASEFVELYVGMGASRVRDLFARAK----------------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (794)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~Ar----------------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (794)
++++.. +...+++.+.... ...+.||||||+|.+... ..+.|+
T Consensus 96 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~---------------~~~~Ll 154 (353)
T 1sxj_D 96 NASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD---------------AQSALR 154 (353)
T ss_dssp CSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH---------------HHHHHH
T ss_pred cccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH---------------HHHHHH
Confidence 876531 1122222222111 124569999999988532 224455
Q ss_pred HhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCC
Q 003806 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (794)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfS 540 (794)
..|+... ..+.+|.+||.++.+++++++ |+. .+.+++|+.++..++++..+...++.++++ .++.++..+.| +
T Consensus 155 ~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~ 227 (353)
T 1sxj_D 155 RTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDG-VLERILDISAG-D 227 (353)
T ss_dssp HHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHTSS-C
T ss_pred HHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-C
Confidence 5555332 346677788999999999988 776 889999999999999999987766666554 47888888887 6
Q ss_pred HHHHHHHHHHHHHHHHhhCCc-cccHHHHHHHHH
Q 003806 541 GADLANLVNEAALLAGRLNKV-VVEKIDFIHAVE 573 (794)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~-~It~~d~~~Al~ 573 (794)
.+.+.++++.++..+.+.+.. .|+.+|+.+++.
T Consensus 228 ~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 228 LRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 888888888887776554433 799999887664
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=7.7e-17 Score=192.50 Aligned_cols=223 Identities=21% Similarity=0.277 Sum_probs=162.0
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEe
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~is 397 (794)
.-+|++++|.++..+.+.+++ . ...+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l---~---------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVL---C---------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---T---------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHH---h---------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 347899999998777665543 2 2356789999999999999999999876 66788888
Q ss_pred cchhH--HHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEE
Q 003806 398 ASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (794)
Q Consensus 398 ~se~~--~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVI 475 (794)
++.+. ..+.|....+++.+|..+....++||||||+|.+.+..... ... ....+.|...+ .+..+.+|
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---~~~---~~~~~~L~~~l----~~~~~~~I 319 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQ---VDAANLIKPLL----SSGKIRVI 319 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS---SCH---HHHHHHHSSCS----SSCCCEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC---cch---HHHHHHHHHHH----hCCCeEEE
Confidence 87776 35677888899999999988889999999999997654321 111 12223333322 34678899
Q ss_pred EEcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc----CCCCCccccchhHHhhhcC-----CCCH
Q 003806 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTT-----GFTG 541 (794)
Q Consensus 476 aATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~t~-----GfSg 541 (794)
++||.++ .+|++|.| ||+ .+.++.|+.+++.+|++.++.. .++.+.++ .+..++..+. .+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTT
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCc
Confidence 9998653 57899998 998 7999999999999999987754 23333332 3445554433 3566
Q ss_pred HHHHHHHHHHHHHHHh----hCCccccHHHHHHHHHHHh
Q 003806 542 ADLANLVNEAALLAGR----LNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 542 aDL~~Lv~eAal~A~r----~~~~~It~~d~~~Al~rvi 576 (794)
..+..++++|+..+.. .....|+.+|+.+++.+..
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 7888999998876654 2456799999999998754
No 58
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=3.9e-17 Score=157.95 Aligned_cols=159 Identities=25% Similarity=0.380 Sum_probs=115.1
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEe
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~is 397 (794)
+.+|++++|.++..+.+.+.+ .. ..+.+++|+||||||||++|++++.++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVL---QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHH---hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 456899999998777665543 22 346789999999999999999999986 78999999
Q ss_pred cchhHH--HhhccchHHHHHHHHHHH-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 003806 398 ASEFVE--LYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (794)
Q Consensus 398 ~se~~~--~~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (794)
+..+.. .+.+.....+..++..+. ...|+||||||+|.+...+... ........+..++ + ..++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~----~~~~~~~~l~~~~---~----~~~~~~ 154 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD----GAMDAGNMLKPAL---A----RGELHC 154 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------CCCCHHHHHHHH---H----TTSCCE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc----chHHHHHHHHHhh---c----cCCeEE
Confidence 887762 344555667777777664 4568899999999997543211 0111122333333 2 245778
Q ss_pred EEEcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHH
Q 003806 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAIL 512 (794)
Q Consensus 475 IaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL 512 (794)
|++||.++ .+++++++ ||+ .+.++.|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888876 78999998 998 6999999999998775
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.68 E-value=1.4e-16 Score=180.84 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=140.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEE
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~i 396 (794)
.+-+|++|+|.++..+.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|+.+
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 455799999999988877665531 334679999999999999999999986 7889999
Q ss_pred ecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 003806 397 SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (794)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (794)
+++ ..|.|....+++.+|..+....|+||||| + .. ...+.|+..|+ ...+.+|+
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~~-------------~a~~~L~~~L~----~g~v~vI~ 296 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-AI-------------DASNILKPSLA----RGELQCIG 296 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-ch-------------hHHHHHHHhhc----CCCEEEEe
Confidence 887 66778878889999999998889999999 1 00 12244444443 45789999
Q ss_pred EcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc----CCCCCccccchhHHhhhcCC-----CCHH
Q 003806 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTG-----FTGA 542 (794)
Q Consensus 477 ATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~t~G-----fSga 542 (794)
+||.++ .+|+++.| ||. .|.|+.|+.+++.+||+.++.. .++.+.++ .+..++..+.+ +.+.
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~-al~~l~~~s~~~~~~~~lp~ 372 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD-AIEAAVKLSDRYISDRFLPD 372 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH-HHHHHHHHHHHSSCCSCTTH
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHhccCcCCc
Confidence 999987 69999999 998 5999999999999999988765 33333322 34555544333 3456
Q ss_pred HHHHHHHHHHHHHHhhCC-ccccHHHHHHHHHH
Q 003806 543 DLANLVNEAALLAGRLNK-VVVEKIDFIHAVER 574 (794)
Q Consensus 543 DL~~Lv~eAal~A~r~~~-~~It~~d~~~Al~r 574 (794)
....++.+|+..+..+.. ......+++..+++
T Consensus 373 ~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~ 405 (468)
T 3pxg_A 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDE 405 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 788888888876655432 22333444444443
No 60
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.68 E-value=1.2e-16 Score=169.40 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=136.5
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH-----
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----- 403 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~----- 403 (794)
++++|++++++.+...+......- ....++...+||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468899999999988776532100 0011233479999999999999999999987 56899999987643
Q ss_pred Hhhccch-----HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--C-------C
Q 003806 404 LYVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--S-------N 469 (794)
Q Consensus 404 ~~vG~~~-----~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~-------~ 469 (794)
.+.|... .....+.........+||||||+|.+.. ...+.|+..|+... . -
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 2222110 0001222333334458999999998742 23345555554221 0 1
Q ss_pred CcEEEEEEcCC--------------------------CCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC----
Q 003806 470 SAVIVLGATNR--------------------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---- 519 (794)
Q Consensus 470 ~~VIVIaATN~--------------------------pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~---- 519 (794)
.++++|+|||. ...++++|++ ||+..+.+.+|+.+++.+|++.++.+.
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36789999998 4468888987 999999999999999999999887642
Q ss_pred -----CCCCccccchhHHhhhcC--CCCHHHHHHHHHHHHHHHH
Q 003806 520 -----ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLAG 556 (794)
Q Consensus 520 -----~l~l~~dvdl~~LA~~t~--GfSgaDL~~Lv~eAal~A~ 556 (794)
...+.+ -.++.++.... ..+.++|.++++.+...+.
T Consensus 237 ~~~~~~~~~~~-~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 237 AEKRISLELTE-AAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HTTTCEEEECH-HHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HhCCcEEEeCH-HHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 111111 23556666665 5678999999988876553
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.68 E-value=2.6e-16 Score=166.27 Aligned_cols=204 Identities=25% Similarity=0.273 Sum_probs=145.6
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEec
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~ 398 (794)
+...+.+|++++|.+++++.|.+.+. . .+.| ++||+||||||||++|+++|+++ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 33456789999999999887776542 1 1233 39999999999999999999986 456888888
Q ss_pred chhHHHhhccchHHHHHHHHHHH------hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcE
Q 003806 399 SEFVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (794)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~Ar------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 472 (794)
++... ...+++.+.... ...++||+|||+|.+.. ...+.|+..++.. ..++
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~~--~~~~ 133 (319)
T 2chq_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEMY--SKSC 133 (319)
T ss_dssp TSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------HHHHTTGGGTSSS--SSSE
T ss_pred ccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHHhc--CCCC
Confidence 76422 112222222221 14478999999998853 2235566666642 3568
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHH
Q 003806 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (794)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa 552 (794)
++|++||.++.+++++.+ |+. .+.+++|+.+++.+++..++.+.++.+.++ .++.++..+.| +.+.+.++++.++
T Consensus 134 ~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp EEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHH-HHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 888999999999999998 665 899999999999999999998777665544 46777877665 6677777776554
Q ss_pred HHHHhhCCccccHHHHHHHH
Q 003806 553 LLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 553 l~A~r~~~~~It~~d~~~Al 572 (794)
.. ...|+.+++.+++
T Consensus 209 ~~-----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 209 AI-----GEVVDADTIYQIT 223 (319)
T ss_dssp HS-----SSCBCHHHHHHHT
T ss_pred Hc-----CCCCCHHHHHHHH
Confidence 32 3458877776654
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=2.4e-15 Score=163.27 Aligned_cols=221 Identities=15% Similarity=0.149 Sum_probs=157.6
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCC--eEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhH
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR--GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFV 402 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pk--gVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~ 402 (794)
..+++++|.++..+.|.+.+..... ...+. .++|+||||||||++++++++++ +.+++.++|....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 3458899999998888877654211 12334 89999999999999999999988 6789999976532
Q ss_pred H------Hh----------hccchHHHHHH-HHHHH-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc
Q 003806 403 E------LY----------VGMGASRVRDL-FARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (794)
Q Consensus 403 ~------~~----------vG~~~~~vr~l-F~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd 464 (794)
. .. .+.....+.+. ..... ...|+||+|||+|.+. ...++.|+..++
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~~~ 150 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFIRLGQ 150 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHHHHHH
Confidence 1 10 01122222222 22222 2458899999999871 134556666654
Q ss_pred CCCC--CCcEEEEEEcCCC---CCCCccccCCCccce-EEEeecCCHHhHHHHHHHHHhcC--CCCCccccchhHHhhhc
Q 003806 465 GFDS--NSAVIVLGATNRS---DVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMT 536 (794)
Q Consensus 465 g~~~--~~~VIVIaATN~p---d~LDpALlRpGRFdr-~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~~LA~~t 536 (794)
.... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+... ...+.+ -.++.+++.+
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~ 227 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSE-DILQMIADIT 227 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCH-HHHHHHHHHH
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHH
Confidence 3321 1478899999987 678888877 7764 89999999999999999888641 112322 2467778888
Q ss_pred ---------CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 003806 537 ---------TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 537 ---------~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (794)
.| ..+.+.++++.|...|..++...|+.+++..++....
T Consensus 228 ~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 228 GAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp SBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 45 6899999999999999888888999999999988764
No 63
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.7e-15 Score=160.24 Aligned_cols=205 Identities=19% Similarity=0.233 Sum_probs=148.2
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEec
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~ 398 (794)
+...+.+|++++|.+++++.|.+.+.. .+.|. +||+||||||||++|++++.++ +.+++.+++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 334567899999999999988776531 23444 9999999999999999999985 456788877
Q ss_pred chhHHHhhccchHHHHHHHHHHH-------hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCc
Q 003806 399 SEFVELYVGMGASRVRDLFARAK-------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (794)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~Ar-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~ 471 (794)
++.. +...+++++.... ...++||+|||+|.+... ..+.|+..++.. ..+
T Consensus 81 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~---------------~~~~L~~~le~~--~~~ 137 (323)
T 1sxj_B 81 SDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG---------------AQQALRRTMELY--SNS 137 (323)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH---------------HHHTTHHHHHHT--TTT
T ss_pred cccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH---------------HHHHHHHHHhcc--CCC
Confidence 6531 2345666666554 234789999999987532 234445555432 356
Q ss_pred EEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHH
Q 003806 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (794)
Q Consensus 472 VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA 551 (794)
+++|.+||.++.+++++.+ |+. .+.+++|+.++..++++.++...++.+.++ .++.++..+.| +.+.+.++++.+
T Consensus 138 ~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 138 TRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTND-GLEAIIFTAEG-DMRQAINNLQST 212 (323)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred ceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7788888999999999988 654 899999999999999999887666555443 46778888866 677777777666
Q ss_pred HHHHHhhCCccccHHHHHHHHH
Q 003806 552 ALLAGRLNKVVVEKIDFIHAVE 573 (794)
Q Consensus 552 al~A~r~~~~~It~~d~~~Al~ 573 (794)
+... ..|+.+++.+++.
T Consensus 213 ~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 213 VAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HHHH-----SSBCHHHHHHHHT
T ss_pred HhcC-----CCcCHHHHHHHHC
Confidence 5321 3588888777653
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.65 E-value=2.2e-15 Score=163.09 Aligned_cols=204 Identities=21% Similarity=0.237 Sum_probs=149.6
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCc-------------
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvp------------- 392 (794)
..+.+|++++|.+++++.|...+.. .+.+..+||+||||||||++|+++|+.++..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3456899999999999988887642 2446679999999999999999999987542
Q ss_pred -----------EEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHH
Q 003806 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (794)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (794)
++.++.+. ..+...++++++.+.. ..+.||+|||+|.+.. ...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~ 137 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFN 137 (373)
T ss_dssp HHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH---------------HHHH
T ss_pred HHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH---------------HHHH
Confidence 22222211 1123446677776653 3468999999998742 2346
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcC
Q 003806 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (794)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (794)
.|+..++. ...++++|++|+.+..+++++.+ |+ ..+.+++|+.++..++++.++...++.+.++ .++.++..+.
T Consensus 138 ~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~-a~~~l~~~~~ 211 (373)
T 1jr3_A 138 ALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAE 211 (373)
T ss_dssp HHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHSS
T ss_pred HHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHCC
Confidence 66776664 33578888889988899999987 65 6899999999999999999987766555443 3677888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 538 GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
| +.+++.++++.+...+ ...|+.+++.+++
T Consensus 212 G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 212 G-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp S-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 7 7899999998876443 3468888876665
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=6.3e-16 Score=184.87 Aligned_cols=199 Identities=20% Similarity=0.299 Sum_probs=137.0
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhh
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV 406 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pk-gVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~v 406 (794)
.++|+|++++++.+.+.+...+.... .-..|. ++||+||||||||++|+++|..+ +.||+.++|+++.+.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 35799999999999888875432110 011233 69999999999999999999987 78999999999987665
Q ss_pred ccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC---------CCCcEEEEEE
Q 003806 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGA 477 (794)
Q Consensus 407 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~~~~VIVIaA 477 (794)
.. ...++...+...++||||||||.+.. .+.+.|+..|+... ...++++|+|
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKAHP---------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGSCH---------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred cc----cchhhHHHHhCCCeEEEEeCccccCH---------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 44 12233444556678999999998732 34455565555311 2246799999
Q ss_pred cCCCCC------------CCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC-------C--CCCccccchhHHhh--
Q 003806 478 TNRSDV------------LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-------E--LPLAKDIDLGDIAS-- 534 (794)
Q Consensus 478 TN~pd~------------LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~-------~--l~l~~dvdl~~LA~-- 534 (794)
||.+.. ++|+|++ |||..|.+++|+.+++.+|++.++... + +.+.++ .++.++.
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~-a~~~l~~~~ 703 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDA-AKAKVAEEG 703 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHH-HHHHHHGGG
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHH-HHHHHHHhC
Confidence 997654 7888887 999999999999999999999887542 1 111111 2455554
Q ss_pred hcCCCCHHHHHHHHHHHHHHH
Q 003806 535 MTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 535 ~t~GfSgaDL~~Lv~eAal~A 555 (794)
....+..++|+++++++...+
T Consensus 704 ~~~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 704 VDLEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp CCTTTTTTTHHHHHHHHTHHH
T ss_pred CCCCCCChHHHHHHHHHHHHH
Confidence 345566788888887765443
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.8e-16 Score=167.68 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=105.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEecchhHH----------Hhh------ccchHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE----------LYV------GMGASRVRD 415 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~is~se~~~----------~~v------G~~~~~vr~ 415 (794)
...|.+++|+||||||||+++++++.++ .+.+++++|..+.+ .+. +.....++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 4578899999999999999999999987 35688999876432 222 234567788
Q ss_pred HHHHH--HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC----Ccccc
Q 003806 416 LFARA--KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL----DPALR 489 (794)
Q Consensus 416 lF~~A--r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L----DpALl 489 (794)
.|... ....++||||||+|.+. . ...+..++.... ..+.+++||+++|..+.. ++++.
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~--~------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~ 185 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL--S------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPS 185 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC--C------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHH
T ss_pred HHHHhhhccCCceEEEEecHHHhh--c------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhh
Confidence 88875 35568999999999986 1 135566665433 235679999999988654 44555
Q ss_pred CCCccc-eEEEeecCCHHhHHHHHHHHHhc
Q 003806 490 RPGRFD-RVVMVETPDKIGREAILKVHVSK 518 (794)
Q Consensus 490 RpGRFd-r~I~v~~Pd~~eR~eILk~~l~~ 518 (794)
+ ||. +.|.|++++.++..+|++..+..
T Consensus 186 S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 186 L--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp H--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred c--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 5 786 68999999999999999999875
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.64 E-value=1.2e-15 Score=185.02 Aligned_cols=204 Identities=24% Similarity=0.326 Sum_probs=136.2
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEe
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~is 397 (794)
+-+|++++|.++..+.+.+++ .. +.+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l---~~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQIL---LR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---HC---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHH---hc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 467999999998766665544 21 345679999999999999999999987 88999999
Q ss_pred cchhH--HHhhccchHHHHHHHHHHHhc-CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 003806 398 ASEFV--ELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (794)
Q Consensus 398 ~se~~--~~~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (794)
++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+..... +.. ...+.|...++ ...+.+
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~----g~~---~~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE----GAV---DAGNMLKPALA----RGELRL 302 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHHH----TTCCCE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc----chH---HHHHHHHHHHh----CCCeEE
Confidence 99887 467788888999999999875 78999999999997543221 111 22233333343 245788
Q ss_pred EEEcCCCC----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhc----CCCCCccccchhHHhhh-----cCCCCH
Q 003806 475 LGATNRSD----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASM-----TTGFTG 541 (794)
Q Consensus 475 IaATN~pd----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~-----t~GfSg 541 (794)
|++||.++ .+|++|.| ||+. +.++.|+.+++.+|++.++.. .++.+.++ .+..++.. +..|.+
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~-al~~~~~ls~r~i~~~~lp 378 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDS-AIIAAATLSHRYITERRLP 378 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHH-HHHHHHHHHHHHCCSSCTH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHH-HHHHHHHHHhhhcccccCh
Confidence 99998764 47999999 9995 999999999999999877653 23333322 24444443 345778
Q ss_pred HHHHHHHHHHHHHHHhh
Q 003806 542 ADLANLVNEAALLAGRL 558 (794)
Q Consensus 542 aDL~~Lv~eAal~A~r~ 558 (794)
.....++.+|+..+...
T Consensus 379 ~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 379 DKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88899999988776543
No 68
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.5e-15 Score=159.34 Aligned_cols=204 Identities=22% Similarity=0.274 Sum_probs=143.8
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CcEEEEec
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 398 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg-----vpfi~is~ 398 (794)
+...+.+|++++|++++++.|...+.. .+. .++||+||||||||++|+++|..+. .+++.+++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHc-----------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 345667899999999999988876642 122 3599999999999999999999863 45788887
Q ss_pred chhHHHhhccchHHHHHHHHHH-H-----hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcE
Q 003806 399 SEFVELYVGMGASRVRDLFARA-K-----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (794)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~A-r-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 472 (794)
++.... ..++..+... . ...++||+|||+|.+... ..+.|+..++.. ..++
T Consensus 85 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~L~~~le~~--~~~~ 141 (327)
T 1iqp_A 85 SDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---------------AQQALRRTMEMF--SSNV 141 (327)
T ss_dssp TCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH---------------HHHHHHHHHHHT--TTTE
T ss_pred cccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH---------------HHHHHHHHHHhc--CCCC
Confidence 654321 1122222221 1 145789999999987421 234555555532 3467
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHH
Q 003806 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (794)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa 552 (794)
++|++||.++.+++++.+ |+. .+.+++|+.++..++++.++...++.++++ .++.++..+.| +.+.+.++++.+.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHH-HHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 888899999999999987 766 789999999999999999988766655443 46778887766 6777777776554
Q ss_pred HHHHhhCCccccHHHHHHHH
Q 003806 553 LLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 553 l~A~r~~~~~It~~d~~~Al 572 (794)
.. ...|+.+++..++
T Consensus 217 ~~-----~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 217 AL-----DKKITDENVFMVA 231 (327)
T ss_dssp TT-----CSEECHHHHHHHT
T ss_pred hc-----CCCCCHHHHHHHH
Confidence 22 2357777765554
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.62 E-value=1.2e-15 Score=182.10 Aligned_cols=196 Identities=21% Similarity=0.332 Sum_probs=136.6
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCC----CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH---
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGA----RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--- 404 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~----~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~--- 404 (794)
++|+|++++++.+...+...+ .|. ++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 468999999998887765432 232 233369999999999999999999999999999999988653
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC-------
Q 003806 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS------- 468 (794)
Q Consensus 405 ---------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~------- 468 (794)
|+|.... ..+....+...++||||||||.+.. .+++.|+..|+...-
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEETTTEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH---------------HHHHHHHHHhcCcEEEcCCCCE
Confidence 3332211 2234444556679999999998632 355666666653110
Q ss_pred --CCcEEEEEEcCCCC-------------------------CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC--
Q 003806 469 --NSAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-- 519 (794)
Q Consensus 469 --~~~VIVIaATN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~-- 519 (794)
-.+++||+|||... .++|+|++ |||..|.+++|+.+++..|++.++.+.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~ 671 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQV 671 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 14688999999854 57888887 999999999999999999999988631
Q ss_pred -----C--CCCccccchhHHhhhc--CCCCHHHHHHHHHHHHHH
Q 003806 520 -----E--LPLAKDIDLGDIASMT--TGFTGADLANLVNEAALL 554 (794)
Q Consensus 520 -----~--l~l~~dvdl~~LA~~t--~GfSgaDL~~Lv~eAal~ 554 (794)
+ +.+.++ .++.++... ..+..++|.++++.+...
T Consensus 672 ~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 672 QLDQKGVSLEVSQE-ARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHHTTEEEEECHH-HHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HHHHCCcEEEeCHH-HHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 1 111111 244455433 234567777777766544
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=2.9e-15 Score=179.15 Aligned_cols=190 Identities=22% Similarity=0.332 Sum_probs=135.1
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEE
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~i 396 (794)
..-+|++++|.++.++.+.+++. .+.+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHHHHh------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 44578999999998887776543 1345679999999999999999999986 8889888
Q ss_pred ecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 003806 397 SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (794)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (794)
++ ...|.|....+++.+|..+....|+||||| +. ....+.|+..|+ +..+.+|+
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--------------~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--------------hhHHHHHHHHHh----cCCEEEEe
Confidence 87 456788888899999999999999999999 10 012244444444 46789999
Q ss_pred EcCCCC-----CCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC----CCCCccccchhHHhhh-----cCCCCHH
Q 003806 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----TTGFTGA 542 (794)
Q Consensus 477 ATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~-----t~GfSga 542 (794)
+||..+ .+|+++.| ||. .|.|+.|+.+++.+||+.++... ++.+.++ .+..++.. +.++.+.
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~-al~~~~~~s~~~i~~~~~p~ 372 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD-AIEAAVKLSDRYISDRFLPD 372 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH-HHHHHHHHHHHSSCCSCTTH
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhcccccCcCCc
Confidence 999988 79999999 995 69999999999999999877652 2222221 23334332 3466778
Q ss_pred HHHHHHHHHHHHHHhh
Q 003806 543 DLANLVNEAALLAGRL 558 (794)
Q Consensus 543 DL~~Lv~eAal~A~r~ 558 (794)
....++.+|+..+...
T Consensus 373 ~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 373 KAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888999887766544
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.62 E-value=4e-16 Score=151.04 Aligned_cols=152 Identities=26% Similarity=0.364 Sum_probs=109.0
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEe
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----------gvpfi~is 397 (794)
+.+|++++|.++..+.+.+.+ .. ..+.++||+||||||||++|++++.++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 457899999998766665543 22 345689999999999999999999986 78899998
Q ss_pred cchhHHH--hhccchHHHHHHHHHHHhc-CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 003806 398 ASEFVEL--YVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (794)
Q Consensus 398 ~se~~~~--~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (794)
+..+... +.+.....+..++..+... .|+||||||+|.+...+... ... . ...+.+...++ ...+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~-~---~~~~~l~~~~~----~~~~~i 155 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGA-L---DAGNILKPMLA----RGELRC 155 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTS-C---CTHHHHHHHHH----TTCSCE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccc-h---HHHHHHHHHHh----cCCeeE
Confidence 8776532 3445556677777777654 78899999999997543210 000 1 12233333333 246788
Q ss_pred EEEcCCCC-----CCCccccCCCccceEEEeecCC
Q 003806 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPD 504 (794)
Q Consensus 475 IaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd 504 (794)
|++||.++ .+|+++++ ||+. +.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 99998765 68999999 9994 8898885
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.60 E-value=5.7e-15 Score=153.80 Aligned_cols=209 Identities=22% Similarity=0.224 Sum_probs=122.2
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---CcEEEEecchhHHH-
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL- 404 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg---vpfi~is~se~~~~- 404 (794)
.+|++++|.+.+.+.+.+.+.... ..+.++||+||||||||++|++++..+. .||+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 479999999999888877665432 2346799999999999999999999874 79999999876432
Q ss_pred ----hhccchHH-------HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc-----C-CC
Q 003806 405 ----YVGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----G-FD 467 (794)
Q Consensus 405 ----~vG~~~~~-------vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd-----g-~~ 467 (794)
..|..... ....|..+ ..++|||||+|.+... ....+.+++..-. + ..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~------------~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM------------VQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH------------HHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH------------HHHHHHHHHHhCCeecCCCccc
Confidence 11211100 01123333 3569999999988532 1222333333211 0 01
Q ss_pred CCCcEEEEEEcCCC-------CCCCccccCCCccceEEEeecCCHHhHH----HHHHHHHh----cCCCCCcccc---ch
Q 003806 468 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVS----KKELPLAKDI---DL 529 (794)
Q Consensus 468 ~~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~----eILk~~l~----~~~l~l~~dv---dl 529 (794)
...++.+|+|||.+ ..++++|.+ ||+. +.+..|+..+|. .+++.++. ..+.+....+ .+
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 12457899999985 246788877 8863 566777776653 34333333 2232110122 24
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 003806 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (794)
Q Consensus 530 ~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (794)
+.+.......+.++|.++++.++..+. ...|+.+|+
T Consensus 215 ~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 215 ETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 445555544467899999999887663 334554443
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=1.7e-15 Score=173.20 Aligned_cols=210 Identities=17% Similarity=0.155 Sum_probs=132.9
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecch-hHHHhhcc
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASE-FVELYVGM 408 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~se-~~~~~vG~ 408 (794)
..++|.+++++.+...+. ...++||+||||||||++|+++|..++ .+|..+.+.- -.+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 358899998876655432 124799999999999999999999884 4666665531 11222221
Q ss_pred -c-hHH-HHHHHHHHHhc---CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCC---------CCCCcEE
Q 003806 409 -G-ASR-VRDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVI 473 (794)
Q Consensus 409 -~-~~~-vr~lF~~Ar~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~---------~~~~~VI 473 (794)
. ... -...|..+... .++|||||||+.+.. .+.+.|+..|+.. ..+.. +
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~---------------~~q~~LL~~lee~~v~i~G~~~~~~~~-~ 151 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERQFRNGAHVEKIPMR-L 151 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCCH---------------HHHHHHHHHHHSSEEECSSSEEECCCC-E
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH---------------HHHHHHHHHHHHHhccCCCCcCCcchh-h
Confidence 1 110 11223322222 477999999986532 2345566666421 11123 4
Q ss_pred EEEEcCCCCC---CCccccCCCccceEEEeecCCH-HhHHHHHHHHHhcC-----------------------CCCCccc
Q 003806 474 VLGATNRSDV---LDPALRRPGRFDRVVMVETPDK-IGREAILKVHVSKK-----------------------ELPLAKD 526 (794)
Q Consensus 474 VIaATN~pd~---LDpALlRpGRFdr~I~v~~Pd~-~eR~eILk~~l~~~-----------------------~l~l~~d 526 (794)
+|+|||.+.. ..+++++ ||...+.++.|+. +++.+|++.+.... .+.++++
T Consensus 152 iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~ 229 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH 229 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH
T ss_pred hhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH
Confidence 5777775322 3458888 9999999999987 77888887764321 1122222
Q ss_pred cchhHHhhh---------cCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 003806 527 IDLGDIASM---------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (794)
Q Consensus 527 vdl~~LA~~---------t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (794)
+ .+.++.. ..|.|++.+..+++.|...|..+++..|+.+|+. ++..+
T Consensus 230 v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 230 V-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp H-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred H-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 1 2223322 3588999999999999999999999999999988 44333
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=3.5e-14 Score=153.59 Aligned_cols=210 Identities=19% Similarity=0.221 Sum_probs=143.0
Q ss_pred ccCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CcEEEEe
Q 003806 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCS 397 (794)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elg-----vpfi~is 397 (794)
.+...+.+|++++|++++++.|...+.. .+.|. +||+||||||||++|+++|+.+. ..+..++
T Consensus 16 ~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 16 VEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 3455677899999999999888776541 23444 99999999999999999999863 2356666
Q ss_pred cchhHHHhhccchHHHHHHHHHHHh------cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCc
Q 003806 398 ASEFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (794)
Q Consensus 398 ~se~~~~~vG~~~~~vr~lF~~Ar~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~ 471 (794)
+++. .+...+++.+..... ..+.|++|||+|.+... ..+.|+..++... ..
T Consensus 84 ~~~~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~---------------~~~~L~~~le~~~--~~ 140 (340)
T 1sxj_C 84 ASDD------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA---------------AQNALRRVIERYT--KN 140 (340)
T ss_dssp TTSC------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH---------------HHHHHHHHHHHTT--TT
T ss_pred Cccc------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH---------------HHHHHHHHHhcCC--CC
Confidence 6542 123344544443321 23689999999987422 2345555555333 45
Q ss_pred EEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHH
Q 003806 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (794)
Q Consensus 472 VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA 551 (794)
+.+|.+||.+..+.+++++ |+. .+.+..++.++..+++...+...++.+.++ .+..++..+.| ..+.+.++++.+
T Consensus 141 ~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~~~ 215 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQSC 215 (340)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTTTT
T ss_pred eEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 6777889999999999998 765 788999999999999998887666655443 45667777655 555555665554
Q ss_pred HHHHHhhCCccccHHHHHHHH
Q 003806 552 ALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 552 al~A~r~~~~~It~~d~~~Al 572 (794)
...+...+...|+.+++.+++
T Consensus 216 ~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 216 KATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTCSSSCCCBCHHHHHHHT
T ss_pred HHhcCCcccccccHHHHHHHh
Confidence 433322223468887776654
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=5e-16 Score=181.34 Aligned_cols=221 Identities=19% Similarity=0.166 Sum_probs=139.9
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE----ecchhHH----
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC----SASEFVE---- 403 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i----s~se~~~---- 403 (794)
..++|++++|+.+.-.+..- .+........+...++||+||||||||+||+++|..++.+++.. ++.++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 46899999887663221100 00000001223344799999999999999999999988766542 2222211
Q ss_pred -HhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC-----------CCCc
Q 003806 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSA 471 (794)
Q Consensus 404 -~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~ 471 (794)
.+.|... .....+..| ..+|+||||||.+... ..+.|+..|+... .+.+
T Consensus 374 ~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~~~---------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMRDE---------------DRVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp GGGTSSCS-EEECHHHHH---SSSEECCTTTTCCCSH---------------HHHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred cccccccc-ccCCeeEec---CCCcEEeehhhhCCHh---------------HhhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 1111100 001123333 2469999999987432 2244555554221 1356
Q ss_pred EEEEEEcCCCC-------------CCCccccCCCccce-EEEeecCCHHhHHHHHHHHHhcCCC----------------
Q 003806 472 VIVLGATNRSD-------------VLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKEL---------------- 521 (794)
Q Consensus 472 VIVIaATN~pd-------------~LDpALlRpGRFdr-~I~v~~Pd~~eR~eILk~~l~~~~l---------------- 521 (794)
+.||||||++. .|+++|++ |||. .+..+.|+.+ ...|.++.+.....
T Consensus 435 ~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 435 AAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred eEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 78999999986 89999999 9985 4555677777 77887777654221
Q ss_pred ---------CCccccchhHHhhh--------------cCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 003806 522 ---------PLAKDIDLGDIASM--------------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 522 ---------~l~~dvdl~~LA~~--------------t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (794)
.+.++ ..+.+... ..+.|.+.+.++++.|...|..+++..|+.+|+.+|+.-..
T Consensus 512 ~~ar~~~~p~ls~e-a~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 512 AYARKYVTPKITSE-AKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHHHHHCCCCCCC-THHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHH-HHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 11111 12223322 45789999999999999999999999999999999996543
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=5.6e-14 Score=151.63 Aligned_cols=194 Identities=15% Similarity=0.187 Sum_probs=132.1
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--------------
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------- 391 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv-------------- 391 (794)
..+.+|++++|++++++.|...+. + ..+.|. ++|+||||||||++++++|+++..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 456789999999998887766441 1 123455 999999999999999999996421
Q ss_pred ---------------cEEEEecchhHHHhhccchHHHHHHHHHHH--------------hcCCEEEEEcccchhhhccCC
Q 003806 392 ---------------PFISCSASEFVELYVGMGASRVRDLFARAK--------------KEAPSIIFIDEIDAVAKSRDG 442 (794)
Q Consensus 392 ---------------pfi~is~se~~~~~vG~~~~~vr~lF~~Ar--------------~~aP~ILfIDEIDaL~~~r~~ 442 (794)
+++.+++++.. ......+++.++.+. ...|.||+|||+|.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---- 148 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---- 148 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH----
Confidence 12333322210 001113555555442 22577999999998631
Q ss_pred CccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCC
Q 003806 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELP 522 (794)
Q Consensus 443 ~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~ 522 (794)
...+.++..++... .++.+|.+||.++.+.+++++ |+ ..+.+++|+.++..++++..+...++.
T Consensus 149 -----------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 149 -----------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -----------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred -----------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 12344555555332 357888889999999999988 66 689999999999999999998876665
Q ss_pred CccccchhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 003806 523 LAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 523 l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A 555 (794)
++.+-.++.++..+.| +.+++.++++.+...+
T Consensus 213 ~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 213 LETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp ECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 5412347788888876 7788888887766543
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.53 E-value=1.2e-14 Score=155.94 Aligned_cols=202 Identities=20% Similarity=0.291 Sum_probs=127.9
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH----
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~---- 404 (794)
++++|.+.+.+.+.+.+.... ..+.++||+||||||||++|++++... +.||+.++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999998888887776542 345679999999999999999999865 689999999876432
Q ss_pred -hhccch-------HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC---------
Q 003806 405 -YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------- 467 (794)
Q Consensus 405 -~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------- 467 (794)
..|... ......|..|. .++|||||||.+... ....|+..++...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~---------------~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL---------------MQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH---------------HHHHHHHHHHSSBCCBTTBCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH---------------HHHHHHHHHhcCEeeecCCccc
Confidence 122110 01223455553 469999999998532 1233444443221
Q ss_pred CCCcEEEEEEcCCC-------CCCCccccCCCccceEEEeecCCHHhHH----HHHHHHHhc----CC---CCCccccch
Q 003806 468 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KE---LPLAKDIDL 529 (794)
Q Consensus 468 ~~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~----eILk~~l~~----~~---l~l~~dvdl 529 (794)
....+.||+|||.+ ..+++.|.. ||. .+.+..|+..+|. .+++.++.. .+ ..+.++ .+
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~-a~ 209 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQ-AM 209 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHH-HH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHH-HH
Confidence 12458899999985 234555655 665 5666777766553 355555432 11 112222 35
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 003806 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (794)
Q Consensus 530 ~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (794)
+.+......-+.++|.++++.|+..+. ...|+.+|+
T Consensus 210 ~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l 245 (304)
T 1ojl_A 210 DLLIHYDWPGNIRELENAIERAVVLLT---GEYISEREL 245 (304)
T ss_dssp HHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBCGGGS
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHhCC---CCcccHHhh
Confidence 566677644478999999999887652 345665554
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.52 E-value=1.7e-14 Score=174.92 Aligned_cols=202 Identities=24% Similarity=0.321 Sum_probs=137.8
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH---
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~--- 404 (794)
+++|+|++++++.+...+...+..-. -..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46789999999999888765432100 001223479999999999999999999988 789999999887542
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--------
Q 003806 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------- 467 (794)
Q Consensus 405 ---------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-------- 467 (794)
|+|... ...+....+...++||||||||.+.. .+++.|+..|+...
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHP---------------DVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSCH---------------HHHHHHHHHHTTTEECCSSSCC
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCH---------------HHHHHHHHHhccCceECCCCCE
Confidence 222211 12334444555678999999997631 35667777776321
Q ss_pred -CCCcEEEEEEcCCC--------------------------CCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcC-
Q 003806 468 -SNSAVIVLGATNRS--------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK- 519 (794)
Q Consensus 468 -~~~~VIVIaATN~p--------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~- 519 (794)
.-.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.++...|++.++...
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 01368899999972 345677776 999999999999999999999887631
Q ss_pred ------C--CCCccccchhHHhhhcC--CCCHHHHHHHHHHHHHHH
Q 003806 520 ------E--LPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLA 555 (794)
Q Consensus 520 ------~--l~l~~dvdl~~LA~~t~--GfSgaDL~~Lv~eAal~A 555 (794)
+ +.+.++ .++.|+.... .++.++|.++|+.+...+
T Consensus 775 ~~~~~~~~~~~~~~~-a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 775 ARLAEKRISLELTEA-AKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp HHHHTTTCEEEECHH-HHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred HHHHhCCceEEECHH-HHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 1 112222 3556666655 567788888888876655
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.48 E-value=4.8e-13 Score=146.50 Aligned_cols=228 Identities=16% Similarity=0.119 Sum_probs=149.1
Q ss_pred cccccccCChHhHHHHHHHH-HHhcChhHHhhhCCCCCCeEEE--EcCCCChHHHHHHHHHHhc---------CCcEEEE
Q 003806 329 ITFADVAGVDEAKEELEEIV-EFLRSPDKYIRLGARPPRGVLL--VGLPGTGKTLLAKAVAGEA---------EVPFISC 396 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV-~~Lk~p~~~~~lg~~~pkgVLL--~GPPGTGKT~LAkALA~el---------gvpfi~i 396 (794)
...++++|.++..+.|.+.+ ...... ....+..++| +||||||||+|++++++++ +.+++.+
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34578999999888887776 543211 0024567999 9999999999999999876 5677888
Q ss_pred ecchh------HHHh---h-------ccchHH-HHHHHHHHH-hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHH
Q 003806 397 SASEF------VELY---V-------GMGASR-VRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (794)
Q Consensus 397 s~se~------~~~~---v-------G~~~~~-vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (794)
+|... .... . +..... ...+..... ...|+||+|||+|.+...+.. . ...+..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~------~---~~~l~~ 163 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI------A---AEDLYT 163 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS------C---HHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc------c---hHHHHH
Confidence 86431 1111 1 111122 222222222 345889999999998643110 1 133444
Q ss_pred HHHhhcCCC-CC--CcEEEEEEcCCCC---CCC---ccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCC--CCcccc
Q 003806 459 LLTEMDGFD-SN--SAVIVLGATNRSD---VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL--PLAKDI 527 (794)
Q Consensus 459 LL~emdg~~-~~--~~VIVIaATN~pd---~LD---pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l--~l~~dv 527 (794)
++..++... .. .++.+|++||.++ .++ +.+.+ +|...+.+++++.++..++++.++..... .+. +-
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~-~~ 240 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE-PR 240 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC-HH
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC-hH
Confidence 444443332 12 6788888887664 334 55655 56556999999999999999887653211 122 22
Q ss_pred chhHHhhhcC------CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 003806 528 DLGDIASMTT------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (794)
Q Consensus 528 dl~~LA~~t~------GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (794)
.+..++..+. | .++.+.++++.|...|..++...++.+++..++...
T Consensus 241 ~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3566778887 7 688999999999888888788889999998888654
No 80
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.38 E-value=2.7e-13 Score=172.17 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=109.4
Q ss_pred CCCCcccccccCChHhHHHHHHHHHH-hc----------ChhHHhh------hCCC----------CCCe--EEEEcCCC
Q 003806 325 QGDTITFADVAGVDEAKEELEEIVEF-LR----------SPDKYIR------LGAR----------PPRG--VLLVGLPG 375 (794)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk----------~p~~~~~------lg~~----------~pkg--VLL~GPPG 375 (794)
..+.++|+||.|.+++|+.+.+.+.+ ++ .++.|.. .|.. +|+| +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 45669999999999999999988877 42 2455555 3333 5666 99999999
Q ss_pred ChHHHHHHHHHHhc---CCcEEEEecchhH------------HHhhcc----chHHHHHHHHHHHhcCCEEEEEcccchh
Q 003806 376 TGKTLLAKAVAGEA---EVPFISCSASEFV------------ELYVGM----GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (794)
Q Consensus 376 TGKT~LAkALA~el---gvpfi~is~se~~------------~~~vG~----~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 436 (794)
||||+||+++|.+. |-|.+.++..+.. +.+++. +++.++.+|..|+..+||+||+||+|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999876 5666666665533 445566 7889999999999999999999999999
Q ss_pred hhccCCC--ccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 437 AKSRDGR--FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 437 ~~~r~~~--~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
.+.+... .......-..+.++++|.+|++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 8874210 01111144567899999999987777788888 77764
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.37 E-value=1.5e-12 Score=152.10 Aligned_cols=102 Identities=27% Similarity=0.372 Sum_probs=69.1
Q ss_pred CcEEEEEEcCCC--CCCCccccCCCccc---eEEEeec--C-CHHhHHHHHHHHHhc-----CCCCCccccchhHHhhhc
Q 003806 470 SAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--P-DKIGREAILKVHVSK-----KELPLAKDIDLGDIASMT 536 (794)
Q Consensus 470 ~~VIVIaATN~p--d~LDpALlRpGRFd---r~I~v~~--P-d~~eR~eILk~~l~~-----~~l~l~~dvdl~~LA~~t 536 (794)
..+.||+|||+. +.++++|++ ||+ ..+.++. + ..+....+++...+. ....+.++ .+..+.+..
T Consensus 251 ~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~e-Al~~Li~~~ 327 (604)
T 3k1j_A 251 CDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKE-AVEEIVREA 327 (604)
T ss_dssp CCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHH-HHHHHHHHH
T ss_pred eeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHH-HHHHHHHHH
Confidence 367899999986 679999998 886 4455432 2 233455555444332 11223222 244444322
Q ss_pred ---CC------CCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 537 ---TG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 537 ---~G------fSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
.| .+.+++.++++.|...|..+++..|+.+|+.+|+.+
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 45 278999999999999998889999999999999965
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.34 E-value=1e-12 Score=125.44 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=79.0
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhcc
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM 408 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~ 408 (794)
.+++|.++..+.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 368899998888877765432 344579999999999999999999986 78999 999876543
Q ss_pred chHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 409 GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 409 ~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
......|..+. .++|||||||.+.... ...|+..|.. ....+.+|+|||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~~~---------------q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTREQ---------------QYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCHHH---------------HHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCHHH---------------HHHHHHHHhh--cCCCEEEEEECCcC
Confidence 23445666664 4599999999985321 1234444432 23456788999875
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.33 E-value=3.6e-13 Score=128.35 Aligned_cols=112 Identities=17% Similarity=0.304 Sum_probs=79.8
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHH
Q 003806 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (794)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~ 412 (794)
+++|.+++.+.+.+.+..+. ..+.+|||+||||||||++|++++...+ ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 58899999888888776432 2345799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 413 vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
...+|+.+. +++|||||+|.+.... ...+..++.+.. ..++.+|+|||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~~------------q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRNI------------QTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHHH------------HHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHHH------------HHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 455666654 4699999999985321 222333443321 3567888899865
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.32 E-value=2e-11 Score=132.18 Aligned_cols=161 Identities=17% Similarity=0.256 Sum_probs=114.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCc------------------------EEEEecchhHHHhhccchHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLF 417 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvp------------------------fi~is~se~~~~~vG~~~~~vr~lF 417 (794)
.+.|..+||+||||||||++|+++|+.+..+ ++.+...+ .-...+...+++++
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVT 97 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHH
Confidence 3567889999999999999999999987542 22222210 00112445678888
Q ss_pred HHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCc
Q 003806 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (794)
Q Consensus 418 ~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 493 (794)
+.+.. ..+.|++|||+|.+.. ...|.|+..++. +..++++|.+||.++.+.+++++ |
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--R 158 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLTD---------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--R 158 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--T
T ss_pred HHHhhccccCCcEEEEECchhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--c
Confidence 77653 3467999999999842 235788888874 34578888899999999999998 6
Q ss_pred cceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHH
Q 003806 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (794)
Q Consensus 494 Fdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa 552 (794)
. ..+.+++|+.++..++++..+ .+. +-.+..+++.+.| +.+.+.++++.+.
T Consensus 159 c-~~~~~~~~~~~~~~~~L~~~~-----~~~-~~~~~~l~~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 159 C-RLHYLAPPPEQYAVTWLSREV-----TMS-QDALLAALRLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp S-EEEECCCCCHHHHHHHHHHHC-----CCC-HHHHHHHHHHTTT-CHHHHHHTTSSHH
T ss_pred c-eeeeCCCCCHHHHHHHHHHhc-----CCC-HHHHHHHHHHcCC-CHHHHHHHhccch
Confidence 4 479999999999998888764 222 2245667777766 6677766665543
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.21 E-value=3.6e-11 Score=103.63 Aligned_cols=75 Identities=33% Similarity=0.493 Sum_probs=69.8
Q ss_pred ecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhc
Q 003806 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (794)
Q Consensus 501 ~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~ 577 (794)
++|+.++|.+||+.|+++. ++..++|++.||..|.||||+||.++|++|++.|.+++...|+++||..|+++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~--~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKM--NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTS--EECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCC--CCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999764 56688999999999999999999999999999999999999999999999998864
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=1e-10 Score=125.76 Aligned_cols=142 Identities=14% Similarity=0.203 Sum_probs=105.1
Q ss_pred CChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc------CCcEEEEecchhHHHhhccc
Q 003806 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------EVPFISCSASEFVELYVGMG 409 (794)
Q Consensus 336 G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el------gvpfi~is~se~~~~~vG~~ 409 (794)
|++++.+.|...+.. + + +..+|||||||+|||++|+++|..+ +..++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 567777777665531 1 2 4579999999999999999999863 34677776542 1234
Q ss_pred hHHHHHHHHHHHhc----CCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 003806 410 ASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (794)
Q Consensus 410 ~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (794)
...++++++.+... ...|++|||+|.+.. ...|.|+..|+. +...+++|.+||.++.+.
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~---------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ---------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH---------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChHhCh
Confidence 56788888888643 246999999999842 235788888884 345678888888899999
Q ss_pred ccccCCCccceEEEeecCCHHhHHHHHHHHH
Q 003806 486 PALRRPGRFDRVVMVETPDKIGREAILKVHV 516 (794)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l 516 (794)
|++++ | .+.+.+|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99998 6 88999999999999988876
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.20 E-value=1.3e-10 Score=153.63 Aligned_cols=173 Identities=18% Similarity=0.272 Sum_probs=115.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHH-HHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHH---------------hcCCEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAV-AGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK---------------KEAPSI 427 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAL-A~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar---------------~~aP~I 427 (794)
..+++||+||||||||++|+.+ +...+.+++.++++... ++..+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 3468999999999999999554 55557888888876543 2334455555431 123579
Q ss_pred EEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCC--------CcEEEEEEcCCCC-----CCCccccCCCcc
Q 003806 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN--------SAVIVLGATNRSD-----VLDPALRRPGRF 494 (794)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~--------~~VIVIaATN~pd-----~LDpALlRpGRF 494 (794)
|||||+|.....+- +.....+.+.+++. ..++... .++.+|||||+|. .|+++++| ||
T Consensus 1340 lFiDEinmp~~d~y------g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY------GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA 1410 (2695)
T ss_dssp EEEETTTCSCCCSS------SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE
T ss_pred EEeccccccccccc------CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee
Confidence 99999987443321 22334567777764 3333211 2589999999994 89999999 88
Q ss_pred ceEEEeecCCHHhHHHHHHHHHhcCCCCCccccc--hhHH------------------hhhcCCCCHHHHHHHHHHHHH
Q 003806 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDID--LGDI------------------ASMTTGFTGADLANLVNEAAL 553 (794)
Q Consensus 495 dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvd--l~~L------------------A~~t~GfSgaDL~~Lv~eAal 553 (794)
..+.++.|+.+++..|+..++... +...+++. ...+ ++...-|+.+||.++++-...
T Consensus 1411 -~vi~i~~P~~~~l~~I~~~il~~~-l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1411 -AILYLGYPSGKSLSQIYEIYYKAI-FKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp -EEEECCCCTTTHHHHHHHHHHHHH-TTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 789999999999999999988653 12222211 0111 112335899999998876543
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.20 E-value=3.5e-11 Score=106.40 Aligned_cols=80 Identities=29% Similarity=0.485 Sum_probs=67.8
Q ss_pred CHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcccchhh
Q 003806 504 DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKT 583 (794)
Q Consensus 504 d~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~e~k~ 583 (794)
|.++|.+||+.|+++ .++.+++|++.||+.|+||||+||.++|++|++.|.+++...|+++||..|++++..|.++++
T Consensus 2 d~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTT--SCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCC--CCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 568999999999976 466789999999999999999999999999999999999999999999999999999988765
Q ss_pred hh
Q 003806 584 AK 585 (794)
Q Consensus 584 ~~ 585 (794)
..
T Consensus 80 ~~ 81 (88)
T 3vlf_B 80 ST 81 (88)
T ss_dssp --
T ss_pred ch
Confidence 43
No 89
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.19 E-value=3.8e-11 Score=105.95 Aligned_cols=77 Identities=32% Similarity=0.468 Sum_probs=70.6
Q ss_pred eecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcc
Q 003806 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (794)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 578 (794)
-.+||.++|.+||+.++++. ++..++|++.||+.|.||||+||.++|++|++.|.++....|+++||..|++++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~--~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKM--NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTS--EECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 35899999999999999764 566889999999999999999999999999999999999999999999999988653
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.13 E-value=1.1e-10 Score=114.51 Aligned_cols=133 Identities=16% Similarity=0.191 Sum_probs=80.7
Q ss_pred CCcccccccCCh-HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchh
Q 003806 327 DTITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (794)
Q Consensus 327 ~~vtf~DV~G~d-evK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~ 401 (794)
...+|+++++.+ ..++.+..+..++.+ +....+.+++|+||||||||+|++++++.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 456899988743 333333333333332 122346789999999999999999999876 777888888877
Q ss_pred HHHhhccchH-HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 402 VELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 402 ~~~~vG~~~~-~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
.+.+...... ....+++.. ..|.+|+|||++..+ .+......+..++.... ..+..+|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~----------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~ 142 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER----------LSDWQRELISYIITYRY----NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC----------CCHHHHHHHHHHHHHHH----HTTCEEEEECCC
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc----------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCC
Confidence 6543221100 000122222 357799999998542 23344456666665543 123466678876
Q ss_pred C
Q 003806 481 S 481 (794)
Q Consensus 481 p 481 (794)
+
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 5
No 91
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.09 E-value=2.1e-10 Score=127.00 Aligned_cols=210 Identities=19% Similarity=0.280 Sum_probs=127.3
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH---
Q 003806 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (794)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~--- 404 (794)
+.+++|.....+++.+.+..+.. ....+||+|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45678888777777666654332 33468999999999999999998765 479999999876442
Q ss_pred --hhccch-------HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCCC----C
Q 003806 405 --YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS----N 469 (794)
Q Consensus 405 --~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~----~ 469 (794)
..|... ......|+.|.. ++||||||+.+.... ...+-+++.+-. .... .
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~~------------q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLEA------------QAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHHH------------HHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCHHH------------HHHHHHHHhcCcEEeCCCCceee
Confidence 122110 012245666554 499999999985322 223333444311 1111 1
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccce-------EEEeecCCHHhHH----HHHHHHHh----cCCCCCcccc---chhH
Q 003806 470 SAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVS----KKELPLAKDI---DLGD 531 (794)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~----eILk~~l~----~~~l~l~~dv---dl~~ 531 (794)
..+.||+|||.. + ..+.+.|+|.. .+.+..|...+|. .++.+++. +.+.+. ..+ .++.
T Consensus 271 ~~~rii~at~~~--l-~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~-~~~~~~a~~~ 346 (387)
T 1ny5_A 271 VNVRILAATNRN--I-KELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEV-EGFTKSAQEL 346 (387)
T ss_dssp CCCEEEEEESSC--H-HHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCC-CEECHHHHHH
T ss_pred ccEEEEEeCCCC--H-HHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCC-CCCCHHHHHH
Confidence 357899999974 1 12223344431 4667788887763 23344433 222221 112 2455
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 003806 532 IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (794)
Q Consensus 532 LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (794)
+..+....+.++|++++++|+..+ ....|+.+|+...+
T Consensus 347 l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 347 LLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 566665456789999999998876 34578888876543
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.00 E-value=4.1e-10 Score=112.01 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=65.1
Q ss_pred CCcccccccCChHh-HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH
Q 003806 327 DTITFADVAGVDEA-KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (794)
Q Consensus 327 ~~vtf~DV~G~dev-K~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~ 402 (794)
...+|+++++.+.. ++.+..+..++..... ...|++++|+||||||||+||++++.++ +.+++.++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 34689999987643 3333333333332110 1134789999999999999999999877 7889999998876
Q ss_pred HHhhccc-hHHHHHHHHHHHhcCCEEEEEcccchhh
Q 003806 403 ELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (794)
Q Consensus 403 ~~~vG~~-~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 437 (794)
..+.... ...+..++..... +++|+|||++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 6433211 1112233333332 3599999997753
No 93
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.97 E-value=1.2e-09 Score=95.06 Aligned_cols=74 Identities=28% Similarity=0.396 Sum_probs=66.7
Q ss_pred CHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhccc
Q 003806 504 DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI 579 (794)
Q Consensus 504 d~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~ 579 (794)
|.++|.+||+.|+++. ++.+++|++.+|..|.||||+||.++|++|++.|.+++...|+++||..|+.++..+.
T Consensus 2 d~~~R~~Il~~~l~~~--~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKM--NLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTS--CBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 6789999999999764 5668899999999999999999999999999999999999999999999999887654
No 94
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.88 E-value=1e-09 Score=95.61 Aligned_cols=72 Identities=28% Similarity=0.350 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhccc
Q 003806 506 IGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI 579 (794)
Q Consensus 506 ~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~ 579 (794)
++|.+||+.|+++ .++.+++|++.+|..|.||||+||.++|++|++.|.+++...|+++||..|++++..+.
T Consensus 1 ~~R~~Il~~~l~~--~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASK--MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp ---------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcC--CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 4789999999976 45667899999999999999999999999999999999999999999999999886553
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.87 E-value=1.3e-07 Score=100.46 Aligned_cols=188 Identities=17% Similarity=0.187 Sum_probs=115.5
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh-----
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF----- 401 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~----- 401 (794)
+....+.++|.++..+.|.+ + .. ..++|+||+|+|||+|++.++++++.+++++++...
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l---~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-L---RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-T---CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH-h---cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 34456789999886665554 3 21 379999999999999999999998777788876543
Q ss_pred ------HHHhh---------------------c-------c-------chHHHHHHHHHHHhc--CCEEEEEcccchhhh
Q 003806 402 ------VELYV---------------------G-------M-------GASRVRDLFARAKKE--APSIIFIDEIDAVAK 438 (794)
Q Consensus 402 ------~~~~v---------------------G-------~-------~~~~vr~lF~~Ar~~--aP~ILfIDEIDaL~~ 438 (794)
...+. + . ....+..+++..... .|.+|+|||+|.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 10000 0 0 012244455544432 389999999999864
Q ss_pred ccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC---------CCccccCCCccceEEEeecCCHHhHH
Q 003806 439 SRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV---------LDPALRRPGRFDRVVMVETPDKIGRE 509 (794)
Q Consensus 439 ~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~---------LDpALlRpGRFdr~I~v~~Pd~~eR~ 509 (794)
.... .....+..+.... .++.+|.+++.... ....+ .||+...+.+.+.+.++..
T Consensus 152 ~~~~--------~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 152 LRGV--------NLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp CTTC--------CCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHH
T ss_pred cCch--------hHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHH
Confidence 2111 1122333333321 24555556553211 11112 2466678999999999999
Q ss_pred HHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHH
Q 003806 510 AILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (794)
Q Consensus 510 eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~e 550 (794)
+++...+...+.... +...+...+.|+ +.-+..++..
T Consensus 216 ~~l~~~~~~~~~~~~---~~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 216 EFLRRGFQEADIDFK---DYEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHTCCCC---CHHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC---cHHHHHHHhCCC-HHHHHHHHHH
Confidence 999887754333322 237788888885 6666666544
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.86 E-value=1.4e-08 Score=114.69 Aligned_cols=212 Identities=20% Similarity=0.163 Sum_probs=122.2
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHH-HHhcCCcEEEEec--chhHHHhhcc--
Q 003806 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV-AGEAEVPFISCSA--SEFVELYVGM-- 408 (794)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAL-A~elgvpfi~is~--se~~~~~vG~-- 408 (794)
|+|++.+|..|.-.+- ....+ .+..-++||.|+||| ||+||+++ +.-+.... +.++ +.... ..+.
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~g-Lt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTD-LTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHH-HSEEEE
T ss_pred cCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccC-ceEEEE
Confidence 8999998876643321 11000 222336999999999 99999999 76654322 2222 11000 0000
Q ss_pred ---chHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc-------CCCCCCcEEEEEEc
Q 003806 409 ---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-------GFDSNSAVIVLGAT 478 (794)
Q Consensus 409 ---~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd-------g~~~~~~VIVIaAT 478 (794)
+...-...+..|.. .|+|||||+.+..+ +...|+.-|+ |..-+..+.||||+
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~~---------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGAPEP---------------HRWALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTCCHH---------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhCCHH---------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 00000112333433 39999999987432 2344444443 22223568999999
Q ss_pred CCCC-----------CCCccccCCCccceEEE-eecCCHHhHH---------HHHHH---HHh-cC-CCCCccccchhHH
Q 003806 479 NRSD-----------VLDPALRRPGRFDRVVM-VETPDKIGRE---------AILKV---HVS-KK-ELPLAKDIDLGDI 532 (794)
Q Consensus 479 N~pd-----------~LDpALlRpGRFdr~I~-v~~Pd~~eR~---------eILk~---~l~-~~-~l~l~~dvdl~~L 532 (794)
|..+ .|+++++. |||..+. ++.|+.+.-. +.++. +++ .. ...+.+++ .+.+
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea-~~yI 423 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEA-RKRL 423 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHH-HHHH
T ss_pred CcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHH-HHHH
Confidence 9865 78899998 9997654 3555543311 12222 222 11 22233221 1111
Q ss_pred h------h-----------hcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 003806 533 A------S-----------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (794)
Q Consensus 533 A------~-----------~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (794)
. + ...|.|++.+..+++-|...|..+++..|+.+|+.+|+.-..
T Consensus 424 ~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 424 EHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 0 0 245889999999999999999999999999999999996543
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.85 E-value=3e-07 Score=97.68 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=115.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH----
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV---- 402 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~---- 402 (794)
+...-+.++|.++..+.|.+.+.. + +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 344557799999988877776541 1 5799999999999999999999886 6666654331
Q ss_pred --------HHhh--------------------ccc----hHHHHHHHHH----HHhcCCEEEEEcccchhhhccCCCccc
Q 003806 403 --------ELYV--------------------GMG----ASRVRDLFAR----AKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (794)
Q Consensus 403 --------~~~v--------------------G~~----~~~vr~lF~~----Ar~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (794)
..+. +.. ...+.++++. +....|.+|+|||++.+.....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----- 145 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----- 145 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----
Confidence 1110 000 0122233322 2223499999999999864100
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC---------CCCccccCCCccceEEEeecCCHHhHHHHHHHHHh
Q 003806 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (794)
Q Consensus 447 ~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd---------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~ 517 (794)
.........+..++... .++.+|.++.... .....+ .||+...+.+.+.+.++..+++...+.
T Consensus 146 ~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 146 RGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp TTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHH
Confidence 01122233333433321 2455555554321 111222 246667899999999999999988776
Q ss_pred cCCCCCccccchhHHhhhcCCCCHHHHHHHHH
Q 003806 518 KKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (794)
Q Consensus 518 ~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~ 549 (794)
..+..+.++ ....+...+.|+ +.-+..++.
T Consensus 218 ~~~~~~~~~-~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 218 EVNLDVPEN-EIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp TTTCCCCHH-HHHHHHHHHTTC-HHHHHHHHH
T ss_pred HcCCCCCHH-HHHHHHHHhCCC-HHHHHHHHH
Confidence 544443332 466778888885 555665554
No 98
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.81 E-value=4.7e-09 Score=115.57 Aligned_cols=195 Identities=18% Similarity=0.284 Sum_probs=116.6
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecchhHH-----H
Q 003806 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFVE-----L 404 (794)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is~se~~~-----~ 404 (794)
.+++|.+....++.+.+..+.. ....+|++|++||||+++|+++....+. +|+.++|+.+.+ .
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 3678888888777776654432 2335999999999999999999877643 399999986532 1
Q ss_pred hhccchH-------HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhc--CCCC----CCc
Q 003806 405 YVGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS----NSA 471 (794)
Q Consensus 405 ~vG~~~~-------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~----~~~ 471 (794)
..|.... .-...|+.|.. .+||||||+.+.... ...|-.++++-. .... ...
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~~------------Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQRV------------QAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCHHH------------HHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCHHH------------HHHHHHHHHhCCcccCCCCcceeee
Confidence 2221110 11234666544 389999999985332 223333343311 1111 125
Q ss_pred EEEEEEcCCCCCCCccccCCCccce-------EEEeecCCHHhH----HHHHHHHHhc----CCCC---CccccchhHHh
Q 003806 472 VIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGR----EAILKVHVSK----KELP---LAKDIDLGDIA 533 (794)
Q Consensus 472 VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR----~eILk~~l~~----~~l~---l~~dvdl~~LA 533 (794)
+.+|+|||.. + ..+...|+|.. .+.+..|...+| ..++.+++.+ .+.+ +.++ .++.+.
T Consensus 264 ~rii~at~~~--l-~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~ 339 (368)
T 3dzd_A 264 IRVISATNKN--L-EEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE-TKEYLM 339 (368)
T ss_dssp CEEEEEESSC--H-HHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH-HHHHHH
T ss_pred eEEEEecCCC--H-HHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHHHHH
Confidence 7899999964 2 22233344432 556677777665 3444444432 2211 2222 355666
Q ss_pred hhcCCCCHHHHHHHHHHHHHHH
Q 003806 534 SMTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 534 ~~t~GfSgaDL~~Lv~eAal~A 555 (794)
.+.+.-+.++|+|+++.|+..+
T Consensus 340 ~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 340 KQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp TCCCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC
Confidence 6665557799999999988764
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.75 E-value=1.7e-09 Score=117.03 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~ 439 (794)
..+...++|+||||||||+||.++|.+.| +.|+.+...+.++.+.......+..+++..... + +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~-~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH-R-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC-S-EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC-C-EEEEecccccccc
Confidence 33445589999999999999999998654 446665223333333333344444555555544 3 9999999998644
Q ss_pred cCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccc
Q 003806 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPAL 488 (794)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpAL 488 (794)
..... ......+.+++++..|.++....++.+|+++| +...|+++
T Consensus 198 ~~~~s---~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNT---TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc---ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 32210 00111244555565555444445678888888 56666665
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.73 E-value=6.4e-09 Score=111.76 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=62.2
Q ss_pred CcccccccCChHh-HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhH
Q 003806 328 TITFADVAGVDEA-KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFV 402 (794)
Q Consensus 328 ~vtf~DV~G~dev-K~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~ 402 (794)
..+|+++.+.+.. +..+..+..++... +...+.+++|+||||||||+||+++|.++ +.+++.++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4689999875532 22333333333321 11135789999999999999999999754 5889999998887
Q ss_pred HHhhccc-hHHHHHHHHHHHhcCCEEEEEcccchhh
Q 003806 403 ELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (794)
Q Consensus 403 ~~~vG~~-~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 437 (794)
..+.... ...+...+.... .+.+|||||++...
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 6543321 111222222222 34599999997653
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.69 E-value=6.4e-09 Score=100.19 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 437 (794)
....++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 45679999999999999999999977 777888888776432 112357799999998753
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.61 E-value=4.4e-08 Score=99.09 Aligned_cols=132 Identities=16% Similarity=0.181 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh--------cC-CcEEEEecchhHHHhh----------ccchH--HHHHHHHHH--
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE--------AE-VPFISCSASEFVELYV----------GMGAS--RVRDLFARA-- 420 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e--------lg-vpfi~is~se~~~~~v----------G~~~~--~vr~lF~~A-- 420 (794)
.+...|++|+||||||++|.+.+.. .| .+++.+++.++.-... ..... ....+++.+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 4457899999999999999886433 45 7887777766542111 11000 112233321
Q ss_pred HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEe
Q 003806 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (794)
Q Consensus 421 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v 500 (794)
.....+||+|||++.+.+.+.... +. ..++..+.. ....++-+|.+|+.++.|+.++++ |++.++++
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~-e~---------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGS-KI---------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTC-CC---------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred cccCceEEEEEChhhhccCccccc-hh---------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 223467999999999975542211 11 135555542 334567778888889999999887 99999999
Q ss_pred ecCCHHhH
Q 003806 501 ETPDKIGR 508 (794)
Q Consensus 501 ~~Pd~~eR 508 (794)
..|....+
T Consensus 151 ~~~~~~~~ 158 (199)
T 2r2a_A 151 ASNKMGMR 158 (199)
T ss_dssp EECSSCCE
T ss_pred cCcccCcc
Confidence 88765443
No 103
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.51 E-value=5.8e-08 Score=107.44 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=78.2
Q ss_pred hCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhh-
Q 003806 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAK- 438 (794)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~- 438 (794)
++.+++..++|+||||+|||+|++++++..+..++.+...+-. .. |........+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~----------~~--~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR----------LN--FELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT----------HH--HHHGGGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh----------HH--HHHHHhcchhHHHHHHHHHHHHH
Confidence 4778888999999999999999999999887766554332210 00 0011112345789999998875
Q ss_pred ccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeec
Q 003806 439 SRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (794)
Q Consensus 439 ~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (794)
.+... .+. .. .....+...++| .+.|+.+||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~--~~~--~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SGQ--GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CCS--HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--ccC--cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22110 011 10 123445555664 34678889999999 79999999987766543
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.45 E-value=3.6e-06 Score=111.97 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=108.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~ 444 (794)
..|+++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+.... +.+++||++.+...
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~e----- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEK----- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHH-----
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChH-----
Confidence 457999999999999999999999999999999986432 345566777666553 59999999986432
Q ss_pred cccchHHHHHHHHHHH----Hhhc---------C--CCCCCcEEEEEEcCC----CCCCCccccCCCccceEEEeecCCH
Q 003806 445 RIVSNDEREQTLNQLL----TEMD---------G--FDSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDK 505 (794)
Q Consensus 445 ~~~~~~e~~~~Ln~LL----~emd---------g--~~~~~~VIVIaATN~----pd~LDpALlRpGRFdr~I~v~~Pd~ 505 (794)
.-..+++.+ ..+. | +.-+..+.|++|.|. ...|+++|.+ || +.+.+..||.
T Consensus 713 -------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 713 -------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQS 782 (2695)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCH
T ss_pred -------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCH
Confidence 222332222 2221 1 112345678888883 4579999988 77 5899999999
Q ss_pred HhHHHHHHHHHhcCCCCCcccc-----ch-hHHhh-----hcCCCCHHHHHHHHHHHHHHH
Q 003806 506 IGREAILKVHVSKKELPLAKDI-----DL-GDIAS-----MTTGFTGADLANLVNEAALLA 555 (794)
Q Consensus 506 ~eR~eILk~~l~~~~l~l~~dv-----dl-~~LA~-----~t~GfSgaDL~~Lv~eAal~A 555 (794)
+...+|+.... ++..++.. .+ ..+.+ ....|.-+.+..++..|....
T Consensus 783 ~~i~ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 783 GTIAEMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 88887754332 12111111 01 11111 223467899998888775443
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.40 E-value=3.4e-07 Score=118.22 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=79.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH----HHhhc------------cchHHHHHHHHHHH
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----ELYVG------------MGASRVRDLFARAK 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~----~~~vG------------~~~~~vr~lF~~Ar 421 (794)
|..++++++|+||||||||+||.+++.++ |-....++..+.. ....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37788999999999999999999998765 4556666655322 11222 23456667777888
Q ss_pred hcCCEEEEEcccchhhhccC--CCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 003806 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (794)
..+|++|||||++.+.+... +...........+.++++|.+|.++....+++||.+-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 89999999999998875321 1100001112356778888888877767777777554
No 106
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.26 E-value=2.7e-06 Score=95.85 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=101.6
Q ss_pred CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE---------cC---CCCCCCccccCCC
Q 003806 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA---------TN---RSDVLDPALRRPG 492 (794)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA---------TN---~pd~LDpALlRpG 492 (794)
|.|+||||+|.|. ....|.|+..|+.... .++|+++ |+ .++.|+|.+++
T Consensus 296 ~~VliIDEa~~l~---------------~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s-- 356 (456)
T 2c9o_A 296 PGVLFVDEVHMLD---------------IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD-- 356 (456)
T ss_dssp ECEEEEESGGGCB---------------HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--
T ss_pred ceEEEEechhhcC---------------HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--
Confidence 4699999999984 2466888888885443 3555555 33 26789999998
Q ss_pred ccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhc-CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHH
Q 003806 493 RFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT-TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (794)
Q Consensus 493 RFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t-~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (794)
||.. +.+++|+.++..++|+..+...+..+.++ .+..+++.+ .| +++...++++.|...|..+++..|+.+|+.+|
T Consensus 357 R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~-~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 357 RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEE-ALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 8875 69999999999999999887655554444 356677777 55 89999999999999999899999999999999
Q ss_pred HHHH
Q 003806 572 VERS 575 (794)
Q Consensus 572 l~rv 575 (794)
+...
T Consensus 434 ~~~~ 437 (456)
T 2c9o_A 434 SELF 437 (456)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8654
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.23 E-value=8.7e-06 Score=87.69 Aligned_cols=178 Identities=16% Similarity=0.081 Sum_probs=118.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CC-cEEEEecchhHHHhhccchHHHHHHHHHHHh----cCCEEEEEcccc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EV-PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEID 434 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gv-pfi~is~se~~~~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEID 434 (794)
+.+..+||+||+|+||+..+++++..+ +. ++..+... + ...++++++.+.. ....||+|||+|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 456689999999999999999998865 32 32222211 1 1334556655542 345699999998
Q ss_pred h-hhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC------CCCCccccCCCccceEEEeecCCHHh
Q 003806 435 A-VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVMVETPDKIG 507 (794)
Q Consensus 435 a-L~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p------d~LDpALlRpGRFdr~I~v~~Pd~~e 507 (794)
. +.. ...+.|+..++... .++++|.+|+.+ ..+.+++.+ | ...+.+.+++..+
T Consensus 87 ~kl~~---------------~~~~aLl~~le~p~--~~~~~il~~~~~~~~~~~~k~~~~i~s--r-~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 87 NGPNA---------------AINEQLLTLTGLLH--DDLLLIVRGNKLSKAQENAAWFTALAN--R-SVQVTCQTPEQAQ 146 (343)
T ss_dssp SCCCT---------------THHHHHHHHHTTCB--TTEEEEEEESCCCTTTTTSHHHHHHTT--T-CEEEEECCCCTTH
T ss_pred CCCCh---------------HHHHHHHHHHhcCC--CCeEEEEEcCCCChhhHhhHHHHHHHh--C-ceEEEeeCCCHHH
Confidence 7 632 13356777776432 344444444443 245567766 3 3578999999999
Q ss_pred HHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 003806 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (794)
Q Consensus 508 R~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (794)
..+.++..+...++.++++ .++.++..+.| +.+++.+.++..+..+ +...|+.+++.+.+..
T Consensus 147 l~~~l~~~~~~~g~~i~~~-a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELDDA-ANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHHTTCEECHH-HHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 9999999998877765544 46677777765 6777777777666553 3457999998887754
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.19 E-value=4.8e-06 Score=111.52 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=92.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCcEEEEecchhHHHhhccchHHHHHHHHHH----H------------hcCCEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELYVGMGASRVRDLFARA----K------------KEAPSI 427 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el-gvpfi~is~se~~~~~vG~~~~~vr~lF~~A----r------------~~aP~I 427 (794)
.+++||+||||||||.+++.....+ +.+++.++++.-. .+..+...++.. + ....+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4569999999999998876655444 6677788776532 234444444421 0 022369
Q ss_pred EEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCC-------CCcEEEEEEcCCC-----CCCCccccCCCccc
Q 003806 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-------NSAVIVLGATNRS-----DVLDPALRRPGRFD 495 (794)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-------~~~VIVIaATN~p-----d~LDpALlRpGRFd 495 (794)
+||||++.-.... -+.......|.+++..-.-+.. -.++.+|||+|.| ..|+++++| ||.
T Consensus 1378 lFiDDiNmp~~D~------yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDK------YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEETTTTCCCCCT------TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEecccCCCCccc------cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 9999998633221 1223345667777764211111 1467899999988 469999998 887
Q ss_pred eEEEeecCCHHhHHHHHHHHHh
Q 003806 496 RVVMVETPDKIGREAILKVHVS 517 (794)
Q Consensus 496 r~I~v~~Pd~~eR~eILk~~l~ 517 (794)
.+.++.|+.+....|+..++.
T Consensus 1450 -vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 -ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -EEECCCCCHHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHH
Confidence 699999999999999876654
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.12 E-value=1.8e-06 Score=87.91 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpf 393 (794)
.+++|+|||||||||++|.++|+.+.-.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 46799999999999999999999886444
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.00 E-value=1.8e-05 Score=78.19 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=24.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi 394 (794)
.+.|+||+|+|||||++.+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998876543
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.81 E-value=2.9e-05 Score=77.25 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=32.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
|..+..-++|+||||+|||+|++.+|...+.+.++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4556667999999999999999999986677788777654
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.78 E-value=0.00012 Score=73.01 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=29.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~ 398 (794)
|..+...++|+||||+|||+|++.++... +.+++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34556679999999999999999998653 456655554
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.75 E-value=4.4e-05 Score=80.61 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgv 391 (794)
.++++|+||||||||++|+++|...+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 357999999999999999999997654
No 114
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.73 E-value=0.00018 Score=72.86 Aligned_cols=131 Identities=21% Similarity=0.207 Sum_probs=71.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHH--Hh--cCCcEEEEecchhHHH------hhcc----------------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVA--GE--AEVPFISCSASEFVEL------YVGM---------------------- 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA--~e--lgvpfi~is~se~~~~------~vG~---------------------- 408 (794)
|+.+..-+.|.||+|+|||+|++.++ .. .+-..+.++....... ..|.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 34556679999999999999999998 32 3444555543321110 0000
Q ss_pred --------------chHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 003806 409 --------------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (794)
Q Consensus 409 --------------~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (794)
.......+........|.+|+|||.-.+..... ......+.+..++..+.. .++.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~------d~~~~~~~l~~l~~~l~~----~g~ti 175 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE------EERKIREVLLKLNTILLE----MGVTT 175 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS------SGGGHHHHHHHHHHHHHH----HCCEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC------CHHHHHHHHHHHHHHHHH----CCCeE
Confidence 011122233333457899999999987754221 123344556667766641 34566
Q ss_pred EEEcCCCCCCC-----ccccCCCcc-ceEEEeecC
Q 003806 475 LGATNRSDVLD-----PALRRPGRF-DRVVMVETP 503 (794)
Q Consensus 475 IaATN~pd~LD-----pALlRpGRF-dr~I~v~~P 503 (794)
|.+|+..+... +.+.. -. |+++.+...
T Consensus 176 i~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~~ 208 (251)
T 2ehv_A 176 ILTTEAPDPQHGKLSRYGIEE--FIARGVIVLDLQ 208 (251)
T ss_dssp EEEECCC----CCSSSSSCGG--GGCSEEEEEEEE
T ss_pred EEEECCCCCCcccccccChhh--EeeeEEEEEeee
Confidence 66776654441 22222 35 777777643
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.68 E-value=7.5e-05 Score=75.35 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=50.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh--c-------CCcEEEEecchh------HHH--hhcc---------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE--A-------EVPFISCSASEF------VEL--YVGM--------------- 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e--l-------gvpfi~is~se~------~~~--~vG~--------------- 408 (794)
|..+..-++|+||||+|||+|++.+|.. . +...++++..+- ... ..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4555667999999999999999999985 2 456777776541 110 0111
Q ss_pred chHH----HHHHHHHHHhcCCEEEEEcccchhhh
Q 003806 409 GASR----VRDLFARAKKEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 409 ~~~~----vr~lF~~Ar~~aP~ILfIDEIDaL~~ 438 (794)
.... +..+.+.+....|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1111 22233344456799999999998764
No 116
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.67 E-value=9.4e-05 Score=71.35 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
|+.++|+|+||+|||+++++++..++.+++.++...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 467999999999999999999999999999888766654
No 117
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.64 E-value=7.2e-05 Score=80.46 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=51.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecchh--HH----H--hhcc---------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF--VE----L--YVGM--------------- 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se~--~~----~--~vG~--------------- 408 (794)
|.++..-++|+||||+|||+||..+|..+ +.+.++++...- .+ . -.|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45566679999999999999999999865 556777776542 11 0 0111
Q ss_pred chH----HHHHHHHHHHh-cCCEEEEEcccchhhhc
Q 003806 409 GAS----RVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (794)
Q Consensus 409 ~~~----~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~ 439 (794)
... .+..+....+. ..|.+|+||.+..+...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 111 12233334444 67899999999998753
No 118
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.61 E-value=0.00021 Score=96.13 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=87.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHHhhccchHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~ 444 (794)
..|..+.||+|||||.+++.+|..+|.+++.++|++-.+ ...+-.+|.-+... -+-.++||++.+...
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~----- 671 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEER----- 671 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHH-----
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHH-----
Confidence 346789999999999999999999999999999986433 23445556655543 347889999887422
Q ss_pred cccchHHHHHHHHHHHH--------h-----hc-C--CCCCCcEEEEEEcCC----CCCCCccccCCCccceEEEeecCC
Q 003806 445 RIVSNDEREQTLNQLLT--------E-----MD-G--FDSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPD 504 (794)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~--------e-----md-g--~~~~~~VIVIaATN~----pd~LDpALlRpGRFdr~I~v~~Pd 504 (794)
.-.++.+.+. . ++ | +.-+..+.|++|.|. ...|+++|.. || +.|.+..||
T Consensus 672 -------vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd 741 (3245)
T 3vkg_A 672 -------ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPD 741 (3245)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCC
T ss_pred -------HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCC
Confidence 1122222121 1 11 1 112345678888884 4689999988 77 469999999
Q ss_pred HHhHHHHHH
Q 003806 505 KIGREAILK 513 (794)
Q Consensus 505 ~~eR~eILk 513 (794)
.+...+|+-
T Consensus 742 ~~~i~ei~L 750 (3245)
T 3vkg_A 742 REMIAQVML 750 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.59 E-value=0.00012 Score=80.59 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=51.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHH----hhcc-----------chHHHHHHHHHH-H
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVGM-----------GASRVRDLFARA-K 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~----~vG~-----------~~~~vr~lF~~A-r 421 (794)
|..+...++|+||||+|||+||..+|.++ +.++++++...-.+. ..|. ....+.+.++.. +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566679999999999999999998764 667777776532211 1111 112223333322 3
Q ss_pred hcCCEEEEEcccchhhh
Q 003806 422 KEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (794)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46788999999999874
No 120
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.54 E-value=8.8e-05 Score=81.40 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=49.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH----Hhhcc--------chHHHHHHHHH----HH
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGM--------GASRVRDLFAR----AK 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~----~~vG~--------~~~~vr~lF~~----Ar 421 (794)
|..+..-++|+||||+|||+|+..+|..+ +.++++++..+... .-.|. ....+.+++.. .+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34455569999999999999999998764 56777777654211 00110 01112222222 23
Q ss_pred hcCCEEEEEcccchhhh
Q 003806 422 KEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (794)
...|++++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999988864
No 121
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.53 E-value=7.9e-05 Score=81.44 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=49.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH----Hhhcc-----------chHHHHHHHH-HHH
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGM-----------GASRVRDLFA-RAK 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~----~~vG~-----------~~~~vr~lF~-~Ar 421 (794)
|..+..-++|+||||+|||+||..++..+ +.++++++...-.+ ...|. ....+.++.. .++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45556679999999999999999998654 56677776543211 11121 1112222222 333
Q ss_pred hcCCEEEEEcccchhh
Q 003806 422 KEAPSIIFIDEIDAVA 437 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~ 437 (794)
...|++|+||++..+.
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 5679999999999986
No 122
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.50 E-value=0.0002 Score=71.42 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=24.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
|+.+..-+.|+||+|+|||+|++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555569999999999999999999854
No 123
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.49 E-value=0.00021 Score=77.58 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=50.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecchh--HH----H--hhccc--------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF--VE----L--YVGMG-------------- 409 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se~--~~----~--~vG~~-------------- 409 (794)
|.++..-++|+||||+|||+||..+|..+ +.+.++++...- .+ . ..|..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 44555568999999999999999999863 456777776542 11 0 01110
Q ss_pred -hHHH----HHHHHHHHh--cCCEEEEEcccchhhhc
Q 003806 410 -ASRV----RDLFARAKK--EAPSIIFIDEIDAVAKS 439 (794)
Q Consensus 410 -~~~v----r~lF~~Ar~--~aP~ILfIDEIDaL~~~ 439 (794)
...+ ..+....+. ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 1111 122233444 67899999999998754
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.41 E-value=0.00011 Score=95.33 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=75.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh----hc--------cchHHHHHHHHHHHh---
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----VG--------MGASRVRDLFARAKK--- 422 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~----vG--------~~~~~vr~lF~~Ar~--- 422 (794)
|..++..++|+|+||+|||+||..+|.++ +.++++++..+..... .| ..+..+.+++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46778889999999999999999998866 4579999876544332 22 112234555555543
Q ss_pred -cCCEEEEEcccchhhh-ccC-CCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 003806 423 -EAPSIIFIDEIDAVAK-SRD-GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (794)
Q Consensus 423 -~aP~ILfIDEIDaL~~-~r~-~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (794)
..|++|+||.++.+.. ... +........-..+.+++++..|..+....++.||++..
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6799999999999875 210 00000011112334677777766655556667766653
No 125
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.39 E-value=0.0031 Score=72.45 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=95.5
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecc
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS 399 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~s 399 (794)
.....++|.+...+.|.+.+... ...++-++|+||+|+|||+||+.++... ++-++.++..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34567999999888776654321 1234569999999999999999997532 2233344332
Q ss_pred h---hHHHh------hc----------cchHHHHHHHHHHHh--cCCEEEEEcccchhhhccCCCccccchHHHHHHHHH
Q 003806 400 E---FVELY------VG----------MGASRVRDLFARAKK--EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (794)
Q Consensus 400 e---~~~~~------vG----------~~~~~vr~lF~~Ar~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (794)
+ +...+ .+ .....+...+...-. ..|++|+||+++...
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--------------------- 249 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------------------- 249 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---------------------
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---------------------
Confidence 1 11111 11 011222222322222 268999999997421
Q ss_pred HHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEee---cCCHHhHHHHHHHHHhcCCCCCccccchhHHhhh
Q 003806 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVE---TPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (794)
Q Consensus 459 LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~---~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (794)
.+.. +. .+..||.||..+..... .. +..+.+. ..+.++-.+++..++... . ....-....|++.
T Consensus 250 ~l~~---l~--~~~~ilvTsR~~~~~~~--~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~-~~~~~~~~~i~~~ 316 (591)
T 1z6t_A 250 VLKA---FD--SQCQILLTTRDKSVTDS--VM----GPKYVVPVESSLGKEKGLEILSLFVNMK-K-ADLPEQAHSIIKE 316 (591)
T ss_dssp HHHT---TC--SSCEEEEEESCGGGGTT--CC----SCEEEEECCSSCCHHHHHHHHHHHHTSC-G-GGSCTHHHHHHHH
T ss_pred HHHH---hc--CCCeEEEECCCcHHHHh--cC----CCceEeecCCCCCHHHHHHHHHHHhCCC-c-ccccHHHHHHHHH
Confidence 1122 22 34466667765432211 11 2234443 678888888998887531 1 1112246788899
Q ss_pred cCCCCHHHHHHH
Q 003806 536 TTGFTGADLANL 547 (794)
Q Consensus 536 t~GfSgaDL~~L 547 (794)
+.|. +.-|..+
T Consensus 317 ~~G~-PLal~~~ 327 (591)
T 1z6t_A 317 CKGS-PLVVSLI 327 (591)
T ss_dssp HTTC-HHHHHHH
T ss_pred hCCC-cHHHHHH
Confidence 9885 5555444
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.35 E-value=0.00079 Score=67.84 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
|..+..-++|+||||+|||+|+..+|... +.+.++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45566679999999999999998887643 5667776654
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.34 E-value=0.00032 Score=76.86 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH----Hhhcc-----------chHHHHHHHHHH-H
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGM-----------GASRVRDLFARA-K 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~----~~vG~-----------~~~~vr~lF~~A-r 421 (794)
|..+...++|+||||+|||+||..+|.++ +.++++++...-.+ .-.|. ....+.+++... +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45566779999999999999999998754 66788887643211 11111 122333333322 3
Q ss_pred hcCCEEEEEcccchhhh
Q 003806 422 KEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (794)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56788999999999863
No 128
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.32 E-value=0.0005 Score=77.34 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=39.8
Q ss_pred cCCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CC-cEEEEec
Q 003806 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EV-PFISCSA 398 (794)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---gv-pfi~is~ 398 (794)
+...+.+|+++ .++.++.+..+..++... ...++|.||||||||+++.+++..+ +. .++.+..
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cccCCCccccC--CHHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 34456778776 345555555665555442 1269999999999999999998765 33 4555543
No 129
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.30 E-value=0.0029 Score=78.12 Aligned_cols=176 Identities=17% Similarity=0.153 Sum_probs=99.9
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---C--C--cEEEEecchh
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---E--V--PFISCSASEF 401 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~el---g--v--pfi~is~se~ 401 (794)
....+++|.++..++|.+.+... ...++-+.|+|++|+|||+||+.++... . . .++.++.+..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34567999999888777755311 1234568899999999999999998752 1 1 2333333221
Q ss_pred -----H----H---Hhh---------ccchHHHHHHHHHHHhcC--CEEEEEcccchhhhccCCCccccchHHHHHHHHH
Q 003806 402 -----V----E---LYV---------GMGASRVRDLFARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (794)
Q Consensus 402 -----~----~---~~v---------G~~~~~vr~lF~~Ar~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (794)
. . ... ......+.+.+....... +.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 1 1 000 011223333333333333 7899999997531
Q ss_pred HHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeec-CCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcC
Q 003806 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET-PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (794)
Q Consensus 459 LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~-Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (794)
.++.+. .+..||.||..+....... .-...+.++. .+.++-.++|..+..... -.......+|++.+.
T Consensus 250 ---~~~~~~--~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~ 318 (1249)
T 3sfz_A 250 ---VLKAFD--NQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECK 318 (1249)
T ss_dssp ---HHTTTC--SSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTT
T ss_pred ---HHHhhc--CCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCCh--hhCcHHHHHHHHHhC
Confidence 112222 3446777887654432211 1234677775 788888899988774321 111123677889998
Q ss_pred CCCHHHHHHH
Q 003806 538 GFTGADLANL 547 (794)
Q Consensus 538 GfSgaDL~~L 547 (794)
|. +-.|+.+
T Consensus 319 gl-PLal~~~ 327 (1249)
T 3sfz_A 319 GS-PLVVSLI 327 (1249)
T ss_dssp TC-HHHHHHH
T ss_pred CC-HHHHHHH
Confidence 85 4445433
No 130
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.30 E-value=0.00056 Score=72.45 Aligned_cols=60 Identities=28% Similarity=0.400 Sum_probs=41.8
Q ss_pred hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 338 devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
++..+.+.+++..+... ......|..++|.||||+||||+|+.++.+++..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45555566655553321 1233456779999999999999999999988555677777555
No 131
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.27 E-value=0.00018 Score=69.92 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.++.++|+||||+|||++++.+|..+|.+++..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 356799999999999999999999999998754
No 132
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.27 E-value=0.0013 Score=74.05 Aligned_cols=174 Identities=15% Similarity=0.208 Sum_probs=91.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH-------H---------h---hc-cchHHHHHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------L---------Y---VG-MGASRVRDLFARA 420 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~-------~---------~---vG-~~~~~vr~lF~~A 420 (794)
+|.-++++||+|+||||++..+|..+ |..+..+++..+.. . + .+ .....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999998754 66666666543311 0 0 11 1233456777788
Q ss_pred HhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCc--cccCCCccceEE
Q 003806 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP--ALRRPGRFDRVV 498 (794)
Q Consensus 421 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDp--ALlRpGRFdr~I 498 (794)
+...+.+|+||..-.+. .+......+..+..... +..-++|+-++...+.++. ++.....++ -+
T Consensus 179 ~~~~~DvVIIDTaGrl~----------~d~~lm~el~~i~~~~~---pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK----------EDKALIEEMKQISNVIH---PHEVILVIDGTIGQQAYNQALAFKEATPIG-SI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSS----------CCHHHHHHHHHHHHHHC---CSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EE
T ss_pred HhCCCCEEEEECCCccc----------chHHHHHHHHHHHHhhc---CceEEEEEeCCCchhHHHHHHHHHhhCCCe-EE
Confidence 77778899999873321 12222233334433332 2223344444432221111 111111122 34
Q ss_pred EeecCCHHhHHHHHHHHHhcCCCCCc-----------cccchhHHhhhcCCCCHHHHHHHHHHHHH
Q 003806 499 MVETPDKIGREAILKVHVSKKELPLA-----------KDIDLGDIASMTTGFTGADLANLVNEAAL 553 (794)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~l~l~-----------~dvdl~~LA~~t~GfSgaDL~~Lv~eAal 553 (794)
.+..-|...+...+.......+.|+. ...+.+.++.+.-|+ .|+..|++.|..
T Consensus 245 IlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~~ 308 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFKE 308 (443)
T ss_dssp EEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHHH
T ss_pred EEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHHH
Confidence 55555555444333333223333321 123456777777663 688888877643
No 133
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.26 E-value=0.00059 Score=70.54 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=42.7
Q ss_pred hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 338 devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
++.+..+.+++..+.... .....|..++|.||||+|||++|+.++..++.+++.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 444555555555433221 134556779999999999999999999999877777777766
No 134
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.24 E-value=0.00028 Score=76.29 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=46.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEecchhHH----Hhhcc-----------chHHH-HHHHHH---HHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVE----LYVGM-----------GASRV-RDLFAR---AKK 422 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~se~~~----~~vG~-----------~~~~v-r~lF~~---Ar~ 422 (794)
-++|+||||+|||+|+-.++.++ +..+++++..+-.. .-.|. ....+ .++.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 47899999999999988876543 56778887654211 11111 11122 222233 255
Q ss_pred cCCEEEEEcccchhhh
Q 003806 423 EAPSIIFIDEIDAVAK 438 (794)
Q Consensus 423 ~aP~ILfIDEIDaL~~ 438 (794)
..|.+|+||-|.++.+
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 6899999999999974
No 135
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.24 E-value=0.00038 Score=74.36 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=62.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------------C----CcEEEEecchh--HH----H--hhcc-----
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------------E----VPFISCSASEF--VE----L--YVGM----- 408 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------------g----vpfi~is~se~--~~----~--~vG~----- 408 (794)
|.++..-++|+||||+|||+||..+|.++ | .++++++...- .+ . -.|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 44555669999999999999999998753 2 46777776542 11 0 0111
Q ss_pred ----------chH----HHHHHHHHHHh-cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 003806 409 ----------GAS----RVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (794)
Q Consensus 409 ----------~~~----~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (794)
... .+..+....+. ..+++|+||.+..+......+ .+...++.+.+.+++..+..+....++.
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~~~~~~r~~~~~~~~~~L~~la~~~~~~ 251 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG--RGKLAERQQKLGRHMATLNKLADLFNCV 251 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC--TTSHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 111 11223333344 568899999999987532110 0111222334455554444333334455
Q ss_pred EEEE
Q 003806 474 VLGA 477 (794)
Q Consensus 474 VIaA 477 (794)
||.+
T Consensus 252 vi~~ 255 (322)
T 2i1q_A 252 VLVT 255 (322)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 136
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.23 E-value=0.0011 Score=66.87 Aligned_cols=39 Identities=31% Similarity=0.278 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh----cCCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~e----lgvpfi~is~s 399 (794)
|..+..-++++|+||+|||+||..+|.+ .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4556667999999999999999887643 36777777654
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.23 E-value=0.00037 Score=77.60 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=62.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecchh-HH-------Hhhccc--------------
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF-VE-------LYVGMG-------------- 409 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~se~-~~-------~~vG~~-------------- 409 (794)
|+.+..-++|+||||+|||+|++.+|-.. +...++++..+. .. ...|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 55666679999999999999999776432 234677766541 00 001110
Q ss_pred -h----HHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 410 -A----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 410 -~----~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
. ..+..+........|.+|+||++-.+....-.+ .+.-.++.+.+.+++..+..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg--~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG--RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 1 111222333345679999999998876432110 11223333444444444433322334556555543
No 138
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.21 E-value=0.00021 Score=69.47 Aligned_cols=34 Identities=35% Similarity=0.632 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
...|.-++|.|+||+|||++++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4556779999999999999999999999988765
No 139
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.21 E-value=0.00055 Score=74.64 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CcEEEEecch
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE 400 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~se 400 (794)
|+++..-+.|+||||+|||+|++.++.... -..++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 455556699999999999999999998762 3556776543
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.20 E-value=0.00024 Score=70.48 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..+++.++|+||||+|||++++++|+.++.+++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34556799999999999999999999999998654
No 141
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.14 E-value=0.0021 Score=72.47 Aligned_cols=95 Identities=23% Similarity=0.320 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCC--------CCCcEEEEEEc----C
Q 003806 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----N 479 (794)
Q Consensus 412 ~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaAT----N 479 (794)
..++..+.|..+ +|+|+||||+++...++ .+.+...+.+-+.||..|++.. ..++|++|+|. +
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~---~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~ 314 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVA 314 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSC---SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSC
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCC---CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccC
Confidence 344455555222 39999999999865432 1233444456678888888632 24678999887 2
Q ss_pred CCCCCCccccCCCccceEEEeecCCHHhHHHHHH
Q 003806 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (794)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk 513 (794)
.|..+-|.|+. ||+.+|.++.++.++..+|+.
T Consensus 315 ~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 315 RPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred ChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 33335578876 999999999999999999983
No 142
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.10 E-value=0.00034 Score=89.80 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH----Hhhcc--------chHHHHHHHHHHH----
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGM--------GASRVRDLFARAK---- 421 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~----~~vG~--------~~~~vr~lF~~Ar---- 421 (794)
|..++..++|+||||+|||+||..+|.++ +.++++++..+-.+ ...|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46778889999999999999999998765 55788887654332 22221 1123344555443
Q ss_pred hcCCEEEEEcccchhhh
Q 003806 422 KEAPSIIFIDEIDAVAK 438 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (794)
...|++|+||.+..+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999873
No 143
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.09 E-value=0.0042 Score=71.34 Aligned_cols=170 Identities=11% Similarity=0.105 Sum_probs=93.1
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHH----hcCC-----cEEEEecc---hhH
Q 003806 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG----EAEV-----PFISCSAS---EFV 402 (794)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~----elgv-----pfi~is~s---e~~ 402 (794)
+|.++.+++|.+.+..- +...++.|.|+|++|+|||+||+.+++ ...- -++.++.. +..
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999888777765321 112346688999999999999999996 2322 23333332 111
Q ss_pred H---H---hhcc-------------chHHHHHHHHHHHhcC-CEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHh
Q 003806 403 E---L---YVGM-------------GASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (794)
Q Consensus 403 ~---~---~vG~-------------~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (794)
. . ..+. ....+...+...-... +++|+||+++... +. .+. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~--~~~-~ 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI--RWA-Q 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--HHH-H
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--ccc-c
Confidence 1 0 0111 0112333344443443 8899999997631 11 111 1
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCcccc--chhHHhhhcCCCC
Q 003806 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI--DLGDIASMTTGFT 540 (794)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dv--dl~~LA~~t~GfS 540 (794)
. .+..||.||....... . .+..+..+.++..+.++-.++|..+.... +..++. ....|++.+.|.
T Consensus 263 ~------~gs~ilvTTR~~~v~~-~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~~~~~~I~~~c~Gl- 329 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN-A---ASQTCEFIEVTSLEIDECYDFLEAYGMPM--PVGEKEEDVLNKTIELSSGN- 329 (549)
T ss_dssp H------TTCEEEEEESBGGGGG-G---CCSCEEEEECCCCCHHHHHHHHHHTSCCC--C--CHHHHHHHHHHHHHTTC-
T ss_pred c------CCCEEEEEcCCHHHHH-H---cCCCCeEEECCCCCHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhCCC-
Confidence 1 3445666776532211 1 11134578899999999899988875332 110111 245677777774
Q ss_pred HHHHH
Q 003806 541 GADLA 545 (794)
Q Consensus 541 gaDL~ 545 (794)
+-.|.
T Consensus 330 PLAl~ 334 (549)
T 2a5y_B 330 PATLM 334 (549)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 44444
No 144
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.09 E-value=0.00037 Score=67.90 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
...+..+.|.||||+||||+++.+++..+.+.+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4455669999999999999999999988888888877655
No 145
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.09 E-value=0.00021 Score=70.84 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=23.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh---cCCcEEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE---AEVPFISC 396 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e---lgvpfi~i 396 (794)
.-++++||||+|||+++..++.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45889999999999999767654 35555444
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.06 E-value=0.00028 Score=68.60 Aligned_cols=31 Identities=32% Similarity=0.610 Sum_probs=27.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..|+|+|+||+|||++|+.+|..+|.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3599999999999999999999999998653
No 147
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.03 E-value=0.00042 Score=66.39 Aligned_cols=31 Identities=29% Similarity=0.585 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
+..+.|+||||+||||+++.+|+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4569999999999999999999999976653
No 148
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.03 E-value=0.0065 Score=62.62 Aligned_cols=162 Identities=22% Similarity=0.279 Sum_probs=85.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc--------hhHHHhh----------cc--chHHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS--------EFVELYV----------GM--GASRVRDLFARAKK 422 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s--------e~~~~~v----------G~--~~~~vr~lF~~Ar~ 422 (794)
..+++.|+||||||+++-.+|..+ |..+..+... .+..... +. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 359999999999999999998764 6666555442 1111100 00 1122333222
Q ss_pred cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC------------------CCCC
Q 003806 423 EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR------------------SDVL 484 (794)
Q Consensus 423 ~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~------------------pd~L 484 (794)
..|.+++|||+-...... ..+....+.+..++. .++=|++|+|. .+.+
T Consensus 83 ~~pdlvIVDElG~~~~~~------~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~v 148 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPG------SRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETL 148 (228)
T ss_dssp HCCSEEEESCTTCBCCTT------CSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCB
T ss_pred cCCCEEEEeCCCCCCccc------chhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcC
Confidence 468899999986542111 111222233333222 34557777772 1455
Q ss_pred CccccCCCccceEEEeecCCHHhHHHHHHHHHhcCCCCCccccchhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 003806 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (794)
Q Consensus 485 DpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAal~A~ 556 (794)
+..++. +-|.+..++.|..+ +++.....+ +-..... -..+. .-|+...|..|-.-|...++
T Consensus 149 pd~~~~--~a~~v~lvD~~p~~----l~~rl~~g~-vy~~~~~-~~a~~---~~f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 149 PDWVLQ--EAFDLVLIDLPPRE----LLERLRDGK-VYVPEQA-RAAID---AFFTQTNLTALREMAMQTAA 209 (228)
T ss_dssp CHHHHH--TCSEEEEBCCCHHH----HHHHHHTTC-CCCTTCC-HHHHH---HHCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHh--hCCeEEEecCCHHH----HHHHHHCCC-ccChhHH-HHHHH---hhhchhhHHHHHHHHHHHHH
Confidence 555555 55677788887654 333333222 2122221 11121 23677777777655665554
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.98 E-value=0.00039 Score=67.37 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.++.|+|+|+||+|||++++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 456799999999999999999999999888654
No 150
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.98 E-value=0.00043 Score=65.81 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998886544
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.97 E-value=0.0004 Score=68.08 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh-cCCcEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE-AEVPFISC 396 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e-lgvpfi~i 396 (794)
.+..++|+|+||||||++++.+|.. +|.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3456999999999999999999999 78777653
No 152
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.95 E-value=0.0008 Score=70.28 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=22.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
.....-++|+||||+|||+|++.++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344556999999999999999999864
No 153
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.94 E-value=0.0011 Score=68.78 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVE 403 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~~ 403 (794)
+.-|+|+|+||+|||++|+.++.. .|.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 456999999999999999999997 788988777766554
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.93 E-value=0.00049 Score=66.50 Aligned_cols=29 Identities=31% Similarity=0.733 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
.++|.||||+|||++|+.+|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999988765
No 155
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.92 E-value=0.00057 Score=66.11 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..|+-|+|.|+||+|||++++.++..++.+++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4566799999999999999999999999776654
No 156
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.88 E-value=0.00079 Score=66.51 Aligned_cols=34 Identities=38% Similarity=0.495 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..|..|+|.|+||+|||++|+.++..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4456799999999999999999999999887654
No 157
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.86 E-value=0.00074 Score=74.01 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=43.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCcEEEEec-chhH---------HHhhccchHHHHHHHHHHHhcCCEEEEEcc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA-SEFV---------ELYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el----gvpfi~is~-se~~---------~~~vG~~~~~vr~lF~~Ar~~aP~ILfIDE 432 (794)
.+++.||+|+||||+.+++++.. +..++.+.- .++. ...++.....+.+.+..|-...|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48899999999999999998865 233332211 1110 001111122345577888889999999999
Q ss_pred cc
Q 003806 433 ID 434 (794)
Q Consensus 433 ID 434 (794)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 83
No 158
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.86 E-value=0.00052 Score=65.75 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH-hcCCcEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAG-EAEVPFI 394 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~-elgvpfi 394 (794)
|.-++|.||||+|||++|+.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 55689999999999999999998 5554443
No 159
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.85 E-value=0.00063 Score=65.90 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
|.-|+|.|+||+|||++|+.++..++.+++. ..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~--~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS--AGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe--HHHHH
Confidence 5569999999999999999999999987654 44443
No 160
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.83 E-value=0.00075 Score=64.61 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=28.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..++|.|+||||||++++.+|..+|.|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999999998764
No 161
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.83 E-value=0.0015 Score=73.49 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s 399 (794)
|..+..-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56666679999999999999999998753 5677777643
No 162
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.82 E-value=0.00059 Score=66.51 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.+.-++|.|+||+|||++++.+|..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456799999999999999999999999887654
No 163
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.80 E-value=0.012 Score=68.32 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=54.1
Q ss_pred EEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC--CCCccccCCCccceEEEeecC
Q 003806 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETP 503 (794)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd--~LDpALlRpGRFdr~I~v~~P 503 (794)
.+|+|||++.+.... ..+....+..+..+ ....+|.+|.+|.+|. .|+..++. -|...|.+...
T Consensus 345 ivvVIDE~~~L~~~~--------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHT--------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhh--------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 589999999886432 12344555555554 3357899999999997 78888766 67888899999
Q ss_pred CHHhHHHHHH
Q 003806 504 DKIGREAILK 513 (794)
Q Consensus 504 d~~eR~eILk 513 (794)
+..+...||.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 8888776663
No 164
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.80 E-value=0.00087 Score=66.24 Aligned_cols=32 Identities=31% Similarity=0.684 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
.++-++|.||||+||||+|+.+++.+|.+++.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 35679999999999999999999999987765
No 165
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.78 E-value=0.00086 Score=64.09 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=27.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
+.|+|.|+||+|||++|+.+|..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 459999999999999999999999988765
No 166
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.77 E-value=0.00061 Score=64.37 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
-++|.||||+|||++|+.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8889887664
No 167
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.77 E-value=0.00089 Score=67.18 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.+..|+|.|+||+||||+++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 456799999999999999999999999876553
No 168
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.74 E-value=0.0013 Score=76.55 Aligned_cols=97 Identities=27% Similarity=0.410 Sum_probs=56.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecchhHHH----hhccchHHHHHHHHHH---------HhcCCEEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL----YVGMGASRVRDLFARA---------KKEAPSIIF 429 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se~~~~----~vG~~~~~vr~lF~~A---------r~~aP~ILf 429 (794)
..+++.||||||||+++++++.. .+.++..+..+.-... ..+.....+..++... .....++|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 46899999999999999999764 3667766654332111 1122222333333111 011346999
Q ss_pred EcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
|||+..+. ...+..|+..+. ....+++++-.+.
T Consensus 285 IDEasml~---------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG---------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC---------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred EcCccCCC---------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 99997663 124455555443 3455677765543
No 169
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.74 E-value=0.0014 Score=68.77 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=29.9
Q ss_pred hCCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEec
Q 003806 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (794)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~ 398 (794)
.+..+..-++|.||||+|||+|++.+|... |.+++.++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 355666679999999999999999998764 545655543
No 170
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.72 E-value=0.00075 Score=65.12 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi 394 (794)
|.-|+|.|+||+|||++|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999999987
No 171
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.71 E-value=0.00095 Score=67.39 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..+.-++|.||||+|||++++.+|..++.+++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999999877653
No 172
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.70 E-value=0.00089 Score=69.46 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (794)
-++|.||||+|||++|+++|++++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998877654
No 173
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.69 E-value=0.0023 Score=71.80 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s 399 (794)
|..+..-++|.|+||+|||+||..+|..+ |.|+++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56666679999999999999999997643 6678777653
No 174
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.69 E-value=0.00077 Score=65.83 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
++.-|+|.|+||+|||++|+.++..++.+++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356799999999999999999999999766543
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.68 E-value=0.00081 Score=65.17 Aligned_cols=31 Identities=32% Similarity=0.465 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
+..++|.||||+||||+++.+|..++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3458999999999999999999999877654
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.67 E-value=0.0012 Score=63.86 Aligned_cols=37 Identities=27% Similarity=0.379 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se 400 (794)
.+.-+.|.|++|+|||++++.++..+ |.|++.+++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 45568899999999999999999987 99998887543
No 177
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.66 E-value=0.0077 Score=69.02 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=52.3
Q ss_pred CCE-EEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC--CCCccccCCCccceEEEe
Q 003806 424 APS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMV 500 (794)
Q Consensus 424 aP~-ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd--~LDpALlRpGRFdr~I~v 500 (794)
-|- +|+|||+..+... ...+....+..+...- ...++.+|.+|.+|+ .++..++. -|..+|.+
T Consensus 296 lP~ivlvIDE~~~ll~~--------~~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l 361 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMT--------VGKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAF 361 (512)
T ss_dssp CCEEEEEEETHHHHHHH--------HHHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE
T ss_pred CCcEEEEEeCHHHHHhh--------hhHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEE
Confidence 354 8999999887532 1123344444444432 235788899999986 68877766 67888999
Q ss_pred ecCCHHhHHHHHH
Q 003806 501 ETPDKIGREAILK 513 (794)
Q Consensus 501 ~~Pd~~eR~eILk 513 (794)
...+..+...|+.
T Consensus 362 rv~s~~dsr~ilg 374 (512)
T 2ius_A 362 TVSSKIDSRTILD 374 (512)
T ss_dssp CCSSHHHHHHHHS
T ss_pred EcCCHHHHHHhcC
Confidence 9999888877764
No 178
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.65 E-value=0.00096 Score=65.80 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.++-|+|.|+||+|||++++.++.++|.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 345689999999999999999999999876654
No 179
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.62 E-value=0.0041 Score=66.72 Aligned_cols=73 Identities=26% Similarity=0.396 Sum_probs=46.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH-------Hh---h---------ccch-HHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY---V---------GMGA-SRVRDLFA 418 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~-------~~---v---------G~~~-~~vr~lF~ 418 (794)
..+|.-++++||+|+||||++..+|..+ +..+..+.+..+.. .| . +... ....+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3456779999999999999999999764 44555555432211 11 0 1111 12234556
Q ss_pred HHHhcCCEEEEEcccc
Q 003806 419 RAKKEAPSIIFIDEID 434 (794)
Q Consensus 419 ~Ar~~aP~ILfIDEID 434 (794)
.+....|.+|+||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 6667788899999874
No 180
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.62 E-value=0.0013 Score=65.05 Aligned_cols=33 Identities=39% Similarity=0.719 Sum_probs=27.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
..+.-+.|.||+|+|||++++.+++.+|..++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 345679999999999999999999998765543
No 181
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.61 E-value=0.001 Score=64.24 Aligned_cols=26 Identities=23% Similarity=0.449 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+.-++|.||||+||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999999886
No 182
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.61 E-value=0.001 Score=67.95 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~ 403 (794)
.+.|+.|+|.||||+||+|.|+.||..+|++. ++..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 34567799999999999999999999998765 45555543
No 183
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.60 E-value=0.0014 Score=66.56 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.+..|+|.|+||+|||++|+.||.+++.+++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345699999999999999999999999877653
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.59 E-value=0.00098 Score=68.57 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..|..|+|.||||+||||+|+.++.+++.+++++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4567799999999999999999999998776644
No 185
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.58 E-value=0.0011 Score=66.59 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
+..|+|.|+||+|||++|+.+|..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999999877654
No 186
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.58 E-value=0.0016 Score=66.86 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=43.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecch-------hHHHhhccc-----hHHHHHHHHHHHh----cCCE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE-------FVELYVGMG-----ASRVRDLFARAKK----EAPS 426 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se-------~~~~~vG~~-----~~~vr~lF~~Ar~----~aP~ 426 (794)
.-++++||||+|||+++..++.++ |..++.++... +.+. .|.. .....++++.++. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 347788999999999999887665 66666664322 1110 1110 1122355666654 3478
Q ss_pred EEEEcccchh
Q 003806 427 IIFIDEIDAV 436 (794)
Q Consensus 427 ILfIDEIDaL 436 (794)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999865
No 187
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.58 E-value=0.0014 Score=65.33 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.|+|.||||+||||+|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999999887654
No 188
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.58 E-value=0.001 Score=64.51 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAV 385 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAL 385 (794)
.+.-+.|+||+|+|||||++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4455889999999999999953
No 189
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.56 E-value=0.0014 Score=62.94 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
+..++|.||||+|||++++.+++.+|.+++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3468999999999999999999998876654
No 190
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.52 E-value=0.0015 Score=64.97 Aligned_cols=30 Identities=40% Similarity=0.732 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.|+|.||||+||||+|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887654
No 191
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.51 E-value=0.0012 Score=66.31 Aligned_cols=37 Identities=24% Similarity=0.476 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.|..|+|.||||+|||++++.+|..++.+++ +.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i--~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI--SAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC--CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee--cHHHHH
Confidence 4567999999999999999999999997654 444443
No 192
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.51 E-value=0.0016 Score=61.98 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
.|+|.|+||+|||++|+.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999988865
No 193
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.46 E-value=0.0012 Score=69.13 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=43.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC----CcEEEEecchh--H---------HHhhccchHHHHHHHHHHHhcCCEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEF--V---------ELYVGMGASRVRDLFARAKKEAPSII 428 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg----vpfi~is~se~--~---------~~~vG~~~~~vr~lF~~Ar~~aP~IL 428 (794)
+..-++|+||+|+||||+++++++... -.++ +..... . ...+|.....++..+..+-...|.+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 344589999999999999999998642 1121 111110 0 00011112344666777777789999
Q ss_pred EEcccc
Q 003806 429 FIDEID 434 (794)
Q Consensus 429 fIDEID 434 (794)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 194
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.45 E-value=0.0023 Score=62.79 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc-CCcEEEEec
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSA 398 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el-gvpfi~is~ 398 (794)
.+.-|.|.|+||+||||+++.++..+ |.+++.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 35679999999999999999999998 688877653
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.45 E-value=0.0031 Score=62.31 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=27.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
..+.|.||+|+||||+++.+++ +|.+++. ..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id--~d~~~ 36 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD--ADVVA 36 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE--HHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc--hHHHH
Confidence 3588999999999999999998 8888764 44443
No 196
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.44 E-value=0.013 Score=62.30 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=51.8
Q ss_pred hHhHHHHHHHHHHhcChhHHhhhC-CCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhH-------HHh
Q 003806 338 DEAKEELEEIVEFLRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFV-------ELY 405 (794)
Q Consensus 338 devK~~L~eiV~~Lk~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~-------~~~ 405 (794)
+.+++.+.+.+..+-.+.. ... ...+..++|+||+|+|||+++..+|..+ |..+..+.+..+. ..+
T Consensus 79 ~~~~~~~~~~l~~~l~~~~--~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~ 156 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSAD--KWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTY 156 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGG--GSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcc--cccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHH
Confidence 3455555554444322221 111 2356779999999999999999998643 5566666554321 111
Q ss_pred ---h------ccchHHHHHHHHHHHhcCCEEEEEcc
Q 003806 406 ---V------GMGASRVRDLFARAKKEAPSIIFIDE 432 (794)
Q Consensus 406 ---v------G~~~~~vr~lF~~Ar~~aP~ILfIDE 432 (794)
. ......++..+..+ ..|.+|+||-
T Consensus 157 ~~~~gl~~~~~~~~~~l~~al~~~--~~~dlvIiDT 190 (296)
T 2px0_A 157 AELLQAPLEVCYTKEEFQQAKELF--SEYDHVFVDT 190 (296)
T ss_dssp HTTTTCCCCBCSSHHHHHHHHHHG--GGSSEEEEEC
T ss_pred HHhcCCCeEecCCHHHHHHHHHHh--cCCCEEEEeC
Confidence 0 11223444444443 5578999993
No 197
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.44 E-value=0.0021 Score=64.30 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
+..+.|.||+|+||||+++.+++.+|++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3468999999999999999999999987764
No 198
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.35 E-value=0.0021 Score=69.60 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~s 399 (794)
+++.++|+||+|+|||+|++.+|.+++.+++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 355799999999999999999999999888877643
No 199
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.33 E-value=0.0076 Score=61.70 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~s 399 (794)
.++++||+|+|||.+|.+++...+.+.+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999999888777766544
No 200
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.33 E-value=0.019 Score=61.33 Aligned_cols=39 Identities=26% Similarity=0.194 Sum_probs=30.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
|..+..-++|.|+||+|||+||..+|..+ +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56666679999999999999999998654 4677777643
No 201
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.32 E-value=0.0028 Score=62.73 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se 400 (794)
.++.-+.|.||+|+|||++++++|+.+ |...+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 456678999999999999999999987 55544555433
No 202
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.30 E-value=0.0021 Score=62.13 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CcEEEEecchh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEF 401 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elg---vpfi~is~se~ 401 (794)
-|+|.|+||+||||+++.++..++ .++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 489999999999999999999765 44555554443
No 203
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.30 E-value=0.0027 Score=69.74 Aligned_cols=73 Identities=25% Similarity=0.398 Sum_probs=45.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC----CcEEEEecc-hhH--H--Hhh-----ccchHHHHHHHHHHHhcCCEE
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSAS-EFV--E--LYV-----GMGASRVRDLFARAKKEAPSI 427 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg----vpfi~is~s-e~~--~--~~v-----G~~~~~vr~lF~~Ar~~aP~I 427 (794)
..+...++|+||+|+||||+++++++... -.++.+... ++. . .++ |.....+...+..+....|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 44455689999999999999999998642 222222211 000 0 011 112223455667777778999
Q ss_pred EEEcccc
Q 003806 428 IFIDEID 434 (794)
Q Consensus 428 LfIDEID 434 (794)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999983
No 204
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.28 E-value=0.0029 Score=61.18 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el---gvpfi~is 397 (794)
-+.|.|+||+|||++++.++..+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89988765
No 205
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.27 E-value=0.0024 Score=64.58 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
.++|.||||+||+|.|+.||...|++.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3789999999999999999999987764 445554
No 206
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.26 E-value=0.0032 Score=61.76 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.+.|.|++|+|||++++.+|..+|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999888754
No 207
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.25 E-value=0.012 Score=60.47 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=23.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+..-+.|.||.|+|||||++.+++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445569999999999999999999854
No 208
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.22 E-value=0.0027 Score=63.50 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.++|.||||+||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999999887654
No 209
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.19 E-value=0.0021 Score=63.32 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
.+.|+||+|+|||++++.+++ +|++++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 88777654
No 210
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.18 E-value=0.015 Score=63.20 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~ 398 (794)
|..+..-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 55666679999999999999999998763 677777664
No 211
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.15 E-value=0.0028 Score=61.85 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
-+.|.|+||+||||+++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987764
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.13 E-value=0.019 Score=64.52 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH----------Hhhc---------c-chHHHHHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----------LYVG---------M-GASRVRDLFARA 420 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~----------~~vG---------~-~~~~vr~lF~~A 420 (794)
+|.-++++||+|+||||++..+|..+ |..+..+++.-+.. ...| . ........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678999999999999999998754 55665555442211 0011 1 112234455666
Q ss_pred HhcCCEEEEEcccch
Q 003806 421 KKEAPSIIFIDEIDA 435 (794)
Q Consensus 421 r~~aP~ILfIDEIDa 435 (794)
....+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 666788999998744
No 213
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.13 E-value=0.0034 Score=64.17 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
.|.-+.|.||||+||||+++.++..+|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 36779999999999999999999998876543
No 214
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.12 E-value=0.0011 Score=72.76 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=27.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 359999999999999999999999988855
No 215
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.12 E-value=0.0038 Score=61.06 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
|..|.|+|++|+|||++++.+|.. |.+++. ..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id--~d~~~ 42 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD--LDALA 42 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc--ccHHH
Confidence 556999999999999999999998 887765 44444
No 216
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.12 E-value=0.0043 Score=63.79 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCc--------EEEEecchhH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FISCSASEFV 402 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvp--------fi~is~se~~ 402 (794)
..|.-|.|.|++|+|||++|+.++..++.+ +..++..++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 345679999999999999999999999877 3356666664
No 217
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.09 E-value=0.027 Score=64.43 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHH--HHHhc--CCcEEEEecchhHH------Hhhccc----------------------
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKA--VAGEA--EVPFISCSASEFVE------LYVGMG---------------------- 409 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkA--LA~el--gvpfi~is~se~~~------~~vG~~---------------------- 409 (794)
+.+...++|.||+|+|||+|++. +++.. +-.-+++++.+... ...|..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 45566799999999999999999 44432 34456665543110 000000
Q ss_pred --------hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 003806 410 --------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (794)
Q Consensus 410 --------~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (794)
...............|.+|+|||.-++.... ..+....+.+..++..+.. .++.||.+|.+.
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~------~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~ 185 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY------DASSVVRRELFRLVARLKQ----IGATTVMTTERI 185 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT------CCHHHHHHHHHHHHHHHHH----HTCEEEEEEECS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc------CCHHHHHHHHHHHHHHHHH----CCCEEEEEecCC
Confidence 0112223333344678899999997764321 1234445566677776642 245666777776
Q ss_pred CCC
Q 003806 482 DVL 484 (794)
Q Consensus 482 d~L 484 (794)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 655
No 218
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.05 E-value=0.0035 Score=63.38 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
-++|.||||+||||+++.++..++.+++. ..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~--~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE--SGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc--hHHHH
Confidence 37899999999999999999999876544 44443
No 219
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.03 E-value=0.0046 Score=60.14 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is 397 (794)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99987654
No 220
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.02 E-value=0.0019 Score=69.88 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecch-h-----HHH--hhccchHHHHHHHHHHHhcCCEEEEEcccc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-F-----VEL--YVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgv--pfi~is~se-~-----~~~--~vG~~~~~vr~lF~~Ar~~aP~ILfIDEID 434 (794)
...++|+||+|+|||||++++++.... -.+.+.... + .+. ++..+..+.+..+..|-...|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 446999999999999999999987632 234443321 1 000 110133466778888888899999999974
Q ss_pred h
Q 003806 435 A 435 (794)
Q Consensus 435 a 435 (794)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 221
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.99 E-value=0.036 Score=63.40 Aligned_cols=109 Identities=22% Similarity=0.164 Sum_probs=65.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh----HHHh--hc----------------------cc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VELY--VG----------------------MG 409 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~----~~~~--vG----------------------~~ 409 (794)
++.+...++|.||||+|||+|++.+++.. |-+.+++...+- .... .| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45556669999999999999999998754 455555543321 1100 00 12
Q ss_pred hHHHHHHHHHHHhcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 003806 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (794)
Q Consensus 410 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (794)
....+.++..+....|.+|+||=+..+.... ......+.+..++..+.. .++.+|.++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~-------~~~~~~~~i~~ll~~l~~----~g~tvilvsh~ 416 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV-------SNNAFRQFVIGVTGYAKQ----EEITGLFTNTS 416 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS-------CHHHHHHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC-------ChHHHHHHHHHHHHHHHh----CCCEEEEEECc
Confidence 3455666777777889999999655553221 112245556666666642 23444445543
No 222
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.98 E-value=0.0067 Score=60.53 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhHHH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~~~ 404 (794)
.+.|+|++|||||++++.++..+|++++. +.++...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~~ 49 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGHE 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHHH
Confidence 48899999999999999999988988765 4455443
No 223
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.97 E-value=0.0019 Score=63.69 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvp 392 (794)
.+.-|+|.|+||+||||+++.++..++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999987544
No 224
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.96 E-value=0.0046 Score=63.83 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
.|..+.|.||||+|||++++.+|..++.+++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 35679999999999999999999999977654
No 225
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.91 E-value=0.0059 Score=59.88 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCc--EEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISC 396 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvp--fi~i 396 (794)
+.-|+|.|+||+|||++++.++..++.+ ++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 4468999999999999999999988763 5443
No 226
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.90 E-value=0.033 Score=56.05 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=67.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe---cc------hhHHHhh-----------cc------chHHHHHHH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS---AS------EFVELYV-----------GM------GASRVRDLF 417 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el---gvpfi~is---~s------e~~~~~v-----------G~------~~~~vr~lF 417 (794)
.+++|+++|.|||++|-++|-.+ |.++..+. +. .+.+.+. .. .....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48899999999999999997654 67766662 21 2333321 00 123445666
Q ss_pred HHHHh----cCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCc
Q 003806 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (794)
Q Consensus 418 ~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 493 (794)
..++. ...++|+|||+-....-. .... ..++..+... ....-||.|+|.+ +++|+. .
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g-----~l~~-------~ev~~~l~~R--p~~~~vIlTGr~a---p~~l~e--~ 170 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYD-----YLPL-------EEVISALNAR--PGHQTVIITGRGC---HRDILD--L 170 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTT-----SSCH-------HHHHHHHHTS--CTTCEEEEECSSC---CHHHHH--H
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCC-----CCCH-------HHHHHHHHhC--cCCCEEEEECCCC---cHHHHH--h
Confidence 66654 346799999996643221 0111 1233333322 2345677788775 566654 5
Q ss_pred cceEEEee
Q 003806 494 FDRVVMVE 501 (794)
Q Consensus 494 Fdr~I~v~ 501 (794)
-|.+-++.
T Consensus 171 AD~VTem~ 178 (196)
T 1g5t_A 171 ADTVSELR 178 (196)
T ss_dssp CSEEEECC
T ss_pred Ccceeeec
Confidence 56555554
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.85 E-value=0.0073 Score=59.87 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
...++-++|+||||+|||++++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45567799999999999999999999874
No 228
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.83 E-value=0.0025 Score=62.97 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
..|.-|+|.|+||+|||++++.++..++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999998764
No 229
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.82 E-value=0.0055 Score=63.78 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
...+.|+||+|+|||++++.+|+.+|.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 44699999999999999999999999888764
No 230
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.81 E-value=0.0061 Score=60.84 Aligned_cols=31 Identities=32% Similarity=0.345 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
|.-|.|.|++|+|||++++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 88776653
No 231
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.79 E-value=0.0072 Score=60.36 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
++.-+.|.||+|+|||++++.+++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455688999999999999999998864
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.77 E-value=0.0046 Score=67.31 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~s 399 (794)
.++-++|.||+|+|||+|+..||..++.+++..+.-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 345699999999999999999999999888776553
No 233
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.75 E-value=0.013 Score=58.39 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
..+.-+.|.||+|+|||||++.+++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455688999999999999999998764
No 234
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.75 E-value=0.0045 Score=61.31 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCcEEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISC 396 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el-gvpfi~i 396 (794)
+.-+.|.||||+|||++++.+++.+ +++++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 4458899999999999999999987 6555443
No 235
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.73 E-value=0.048 Score=61.84 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s 399 (794)
|..+..-++|.|+||+|||+||..+|..+ |.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 55666679999999999999999998754 5678777754
No 236
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.71 E-value=0.0076 Score=61.25 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=28.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
...+..+.|.|++|+|||++++.+|+.+|++++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3455669999999999999999999999988764
No 237
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.70 E-value=0.0071 Score=60.18 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
|..+.|.|++|+|||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 44699999999999999999999999887653
No 238
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.68 E-value=0.0089 Score=59.57 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998764
No 239
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.68 E-value=0.025 Score=66.08 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
+-+++.||||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 45999999999999998877543
No 240
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.64 E-value=0.0058 Score=64.02 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCcEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFI 394 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el-gvpfi 394 (794)
|.-++|.|+||+|||++|+.++... +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4568999999999999999999864 54444
No 241
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.64 E-value=0.0084 Score=61.87 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
...+.|.||+|+|||++++.+|..+|.+++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3458899999999999999999999987653
No 242
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.61 E-value=0.0097 Score=57.82 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
.+.-++|.|+||+|||++++.+|..+ +.++..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 45568999999999999999999876 4445555543
No 243
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.59 E-value=0.011 Score=65.84 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=28.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
..|.-|+|+|+||+|||++|+.++..++.+++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 456779999999999999999999998866544
No 244
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.57 E-value=0.0071 Score=65.15 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~s 399 (794)
.|+-++|.||+|+|||+||..+|...+.++++++.-
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 456788999999999999999999998877766543
No 245
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.54 E-value=0.0075 Score=60.10 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchh
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~ 401 (794)
..+.-++|.|+||+|||++++.+++.+ |.+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 445668999999999999999999865 466777775444
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.54 E-value=0.012 Score=59.20 Aligned_cols=27 Identities=19% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
.++-+.|+||+|+|||+|++++++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455688999999999999999998653
No 247
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.54 E-value=0.0077 Score=59.01 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
..+.-+.|.||+|+||||+++.+++..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 445668999999999999999999876
No 248
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.53 E-value=0.046 Score=61.47 Aligned_cols=39 Identities=26% Similarity=0.194 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
|..+..-++|.|+||+|||+||..+|..+ |.++.+++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 55666679999999999999999997654 6778777653
No 249
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.47 E-value=0.045 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
+.+++.+|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999887764
No 250
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.45 E-value=0.028 Score=64.53 Aligned_cols=42 Identities=29% Similarity=0.463 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHHHh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY 405 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~~~ 405 (794)
.|.-|+|+|.||+|||++|+.+|..+ +++...++..++....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 34568999999999999999999887 5566677777765543
No 251
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.35 E-value=0.047 Score=57.14 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.+..-+.|.||.|+|||||++++++-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344558899999999999999999853
No 252
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.34 E-value=0.06 Score=57.66 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++..-+.|+||+|+|||||++.+++..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4556669999999999999999999854
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.34 E-value=0.011 Score=57.69 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
.+-+.|+||+|+|||+|++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998753
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.31 E-value=0.025 Score=55.99 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se 400 (794)
..+.-+.|.||+|+|||++++.+++.+ +.+++..+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 345568899999999999999999865 66666665443
No 255
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.28 E-value=0.0097 Score=62.60 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
|.-|.|+|+||+|||++|+.++ ++|.+++. +..+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id--~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID--SDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE--HHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe--hhHHH
Confidence 4569999999999999999999 67877654 44443
No 256
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.23 E-value=0.051 Score=66.44 Aligned_cols=110 Identities=17% Similarity=0.122 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHh-----cCC--c------------EEEEecchhHHHhhccchHHHHHHHHHHH-
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE-----AEV--P------------FISCSASEFVELYVGMGASRVRDLFARAK- 421 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~e-----lgv--p------------fi~is~se~~~~~vG~~~~~vr~lF~~Ar- 421 (794)
.....-++|+||.|+|||++.|.++.- .|. | |-.+...+............+++....++
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh
Confidence 344556999999999999999998742 121 1 01111111111111111112222222222
Q ss_pred hcCCEEEEEcccchhhhccCCCccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 003806 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (794)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (794)
...|++|++||.-+= ............++..+.. ..+..+|.+|...+..
T Consensus 750 a~~p~LlLLDEP~~G----------lD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 750 ATSQSLVILDELGRG----------TSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CCTTCEEEEESTTTT----------SCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGG
T ss_pred ccCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHH
Confidence 467899999997431 1222333444466666531 1345777888876544
No 257
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.22 E-value=0.082 Score=51.52 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=15.5
Q ss_pred CeEEEEcCCCChHHHHHH
Q 003806 366 RGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAk 383 (794)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998743
No 258
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.16 E-value=0.073 Score=53.84 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.6
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 003806 366 RGVLLVGLPGTGKTLLAKAVA 386 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA 386 (794)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 569999999999998776654
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.12 E-value=0.0098 Score=58.81 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFIS 395 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~ 395 (794)
.+.-+.|.||+|+|||||++.+++.++ +.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 445688999999999999999999877 44443
No 260
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.08 E-value=0.011 Score=64.26 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (794)
++-++|.||+|+|||+||+.+|..++..+++.+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 3468999999999999999999999866655543
No 261
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.00 E-value=0.07 Score=61.79 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++..-+.|+||+|+|||||++.+++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4555669999999999999999999865
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.98 E-value=0.016 Score=56.37 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~se~ 401 (794)
-+.|.||+|+||||+++.+++..+. .+.+++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999985532 244555444
No 263
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.98 E-value=0.015 Score=57.01 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.+.-+.|.||+|+|||||++.+++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999975
No 264
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.98 E-value=0.014 Score=62.94 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=27.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (794)
+-++|.||+|+|||+||..+|...+..+++.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 458899999999999999999998876665554
No 265
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.93 E-value=0.065 Score=59.21 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
....-+.|.||+|||||||.|.+|+-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344458899999999999999999854
No 266
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.88 E-value=0.016 Score=58.01 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
-|.|.||+|||||++++.+|..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999984
No 267
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.84 E-value=0.037 Score=68.34 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=33.8
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
+|.++.+++|.+.+... ...+-+.|+||.|+|||+||+.++..
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89998888877765421 12456899999999999999999863
No 268
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.83 E-value=0.072 Score=53.17 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=33.0
Q ss_pred CCCCcccccccCCh-HhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHHHH
Q 003806 325 QGDTITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 325 ~~~~vtf~DV~G~d-evK~~L~eiV~~Lk~p~~~~~lg~---~~pkgVLL~GPPGTGKT~LAk 383 (794)
..|..+|+|..+.. ++.+.|.+. .+..|..++.... ...+.+++.+|+|+|||..+-
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 34667898865554 344443332 1333333333221 134679999999999998654
No 269
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.82 E-value=0.0086 Score=68.64 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecch-hHH---Hh--------hccchHHHHHHHHHHHhcCCEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASE-FVE---LY--------VGMGASRVRDLFARAKKEAPSIIF 429 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~se-~~~---~~--------vG~~~~~vr~lF~~Ar~~aP~ILf 429 (794)
.+.++++.||+|+||||+++++++... ...+.+.... +.- .+ .+.....+.+++..+..+.|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345699999999999999999998763 2344444322 110 00 011122355666667778999999
Q ss_pred Ecccc
Q 003806 430 IDEID 434 (794)
Q Consensus 430 IDEID 434 (794)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99973
No 270
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.81 E-value=0.038 Score=60.76 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+....-+.|.||+|+|||||.+++++-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3444558899999999999999999853
No 271
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.76 E-value=0.014 Score=59.09 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (794)
+++++|.||+|+|||+||..++...+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 56799999999999999999998866 665544
No 272
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.71 E-value=0.017 Score=56.38 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el 389 (794)
+-+.|.||+|+|||||++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999875
No 273
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.71 E-value=0.018 Score=61.05 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----cEEEE-ecchh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----PFISC-SASEF 401 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv-----pfi~i-s~se~ 401 (794)
...|.-+.|.||+|+|||+|++.+++.++. +.+.+ +...|
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 345667889999999999999999987752 23444 65554
No 274
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.69 E-value=0.041 Score=59.20 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=28.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~ 398 (794)
..+++-++++||+|+|||+++..+|..+ +..+..+.+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4566779999999999999999998754 555555544
No 275
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.65 E-value=0.062 Score=60.01 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=39.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC---cEEEEecc-hhH-H----Hhhc-cchHHHHHHHHHHHhcCCEEEEEcccc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSAS-EFV-E----LYVG-MGASRVRDLFARAKKEAPSIIFIDEID 434 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgv---pfi~is~s-e~~-~----~~vG-~~~~~vr~lF~~Ar~~aP~ILfIDEID 434 (794)
.++|+||+|+||||+.+++++.... .++.+.-. ++. . ..+. ...-...+.+..+-...|.++++.|+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 4789999999999999999987642 23332211 110 0 0000 001122344455556789999999863
No 276
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.63 E-value=0.18 Score=49.88 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=32.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLA 382 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LA 382 (794)
+..+|+++.-.+.+.+.|.+. .+..+..++... +...+.+++.+|+|+|||..+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 346788886666666665542 123333333221 112357999999999999873
No 277
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.63 E-value=0.12 Score=65.67 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+++..-+.|+||+|+|||+|++.+.++..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 45566699999999999999999998764
No 278
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.63 E-value=0.067 Score=61.03 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
...+.-++|+||+|+|||||++.||+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4456668999999999999999999865
No 279
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.61 E-value=0.12 Score=54.47 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=38.4
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCC----CCCCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEec
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA----RPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~----~~pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~ 398 (794)
.+|+++.-.+...+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-..+-+. +...+.+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 4677776556666555542 1222222222211 123679999999999999876554432 444555443
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.59 E-value=0.057 Score=58.35 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.+|.-+.|+||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999865
No 281
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.57 E-value=0.056 Score=60.64 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=46.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecchhHHH-------h---hc---------cc-hHHHHHHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL-------Y---VG---------MG-ASRVRDLFA 418 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el----gvpfi~is~se~~~~-------~---vG---------~~-~~~vr~lF~ 418 (794)
.+|+.++++|++|+|||+++-.+|..+ |..+..+++.-+... + .+ .. ...+++.+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999998654 677777766532110 0 00 11 222356677
Q ss_pred HHHhcCCEEEEEccc
Q 003806 419 RAKKEAPSIIFIDEI 433 (794)
Q Consensus 419 ~Ar~~aP~ILfIDEI 433 (794)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 776555669999874
No 282
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.55 E-value=0.018 Score=57.16 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++.+.|+||+|+|||||++.+++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34569999999999999999999865
No 283
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.48 E-value=0.088 Score=60.98 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.++..-+.|+||+|+|||||++.+++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455569999999999999999999854
No 284
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.44 E-value=0.13 Score=59.73 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.+++..-+.|+||+|+|||||++.+++..
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34556669999999999999999999854
No 285
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.42 E-value=0.053 Score=62.01 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~ 398 (794)
..|+.|+++|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 356679999999999999999999654 566666655
No 286
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.41 E-value=0.54 Score=46.34 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=34.5
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~---~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+|+|+.-.+++.+.|.+. -+..|..++.... ...+.+++.+|+|+|||..+-..+-+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 35688876566666655441 1333333332211 12356999999999999876655543
No 287
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.41 E-value=0.17 Score=58.52 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.++..-+.|+||+|+|||||++.+++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4455669999999999999999999854
No 288
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.33 E-value=0.091 Score=64.35 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~ 387 (794)
...-++|+||.|+|||++.|.+|.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999953
No 289
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.32 E-value=0.018 Score=58.01 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=17.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHH-Hhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVA-GEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA-~el 389 (794)
.++.-+.|.||+|+|||+|++.++ +..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345568899999999999999999 765
No 290
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.30 E-value=0.066 Score=64.32 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
...+++.||+|+|||+++..++.+
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999987777554
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.30 E-value=0.033 Score=59.43 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
...+.-+.|+||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456678999999999999999999865
No 292
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.29 E-value=0.08 Score=56.15 Aligned_cols=72 Identities=29% Similarity=0.270 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH-------HHh---hc---------cch-HHHHHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG---------MGA-SRVRDLFARA 420 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~-------~~~---vG---------~~~-~~vr~lF~~A 420 (794)
.++.+.++|++|+|||++++.+|..+ +..+..+.+.-.. ..+ .+ ..+ ...+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998754 4455544432110 000 00 112 2235667777
Q ss_pred HhcCCEEEEEcccch
Q 003806 421 KKEAPSIIFIDEIDA 435 (794)
Q Consensus 421 r~~aP~ILfIDEIDa 435 (794)
+...+.+|+||+--.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 656788999999643
No 293
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.24 E-value=0.022 Score=63.46 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (794)
++-++|.||+|+|||+||..+|..++..+++++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3458899999999999999999999877655543
No 294
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.23 E-value=0.03 Score=65.68 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~ 401 (794)
.+.-|+|+|+||+||||+|++++..+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45569999999999999999999998 999999875544
No 295
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.23 E-value=0.039 Score=64.13 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++..-+.|+||+|+|||||++.+++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4556669999999999999999999854
No 296
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.19 E-value=0.026 Score=56.91 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.++.-+.|+||+|+|||+|++.+++..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344558999999999999999999976
No 297
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.11 E-value=0.029 Score=55.66 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
....-+.|.||+|+|||||++++++...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3445588999999999999999999863
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.07 E-value=0.045 Score=52.58 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.....++++|++|+|||+|+.++.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998764
No 299
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.06 E-value=0.033 Score=56.04 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCCeEEEEcCCCChHH-HHHHHHHH--hcCCcEEEEecc---hhHHHh---hcc-----chHHHHHHHHHHHhcCCEEEE
Q 003806 364 PPRGVLLVGLPGTGKT-LLAKAVAG--EAEVPFISCSAS---EFVELY---VGM-----GASRVRDLFARAKKEAPSIIF 429 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT-~LAkALA~--elgvpfi~is~s---e~~~~~---vG~-----~~~~vr~lF~~Ar~~aP~ILf 429 (794)
+.+-.++|||.|+||| .|.+++.+ +.+..++.++.. .+.+.. .|. ......++++..+ ...+|+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEE
Confidence 3445889999999999 88898865 457777777643 221110 010 0011223333322 346999
Q ss_pred Ecccchh
Q 003806 430 IDEIDAV 436 (794)
Q Consensus 430 IDEIDaL 436 (794)
|||+.-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999876
No 300
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.05 E-value=0.034 Score=53.70 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+..-+.|.||.|+|||+|+|.+++..
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3444558899999999999999999986
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.93 E-value=0.093 Score=55.79 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH----H---Hh---h------c---cch-HHHHHHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----E---LY---V------G---MGA-SRVRDLFARAK 421 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~----~---~~---v------G---~~~-~~vr~lF~~Ar 421 (794)
+.-++++|++|+|||+++..+|..+ +..+..+++.-+. + .+ . + ... ..+.+.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6678899999999999999998765 5566655553211 0 00 0 0 111 22345666666
Q ss_pred hcCCEEEEEccc
Q 003806 422 KEAPSIIFIDEI 433 (794)
Q Consensus 422 ~~aP~ILfIDEI 433 (794)
.....+|+||=.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 556679999874
No 302
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.89 E-value=0.031 Score=57.08 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elgvp 392 (794)
.+.-+.|.||+|+|||||++.+++.+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34458899999999999999999987754
No 303
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.87 E-value=0.14 Score=51.76 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=30.5
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAk 383 (794)
|..+|+++.-.+.+.+.+.+. .+..|..++... +...+.+++.+|+|+|||..+-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 446677765455554444331 122232222211 1123579999999999998754
No 304
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.86 E-value=0.032 Score=60.91 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=46.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEEEecc-hhH-----H--Hhh-------cc-chHHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFV-----E--LYV-------GM-GASRVRDLFARAKKE 423 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~is~s-e~~-----~--~~v-------G~-~~~~vr~lF~~Ar~~ 423 (794)
+++...++|+||+|+|||||++++++... .-.+.+... ++. . .++ +. ....+++.+..+...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 34455799999999999999999998763 223333321 110 0 011 10 122456777778778
Q ss_pred CCEEEEEcccc
Q 003806 424 APSIIFIDEID 434 (794)
Q Consensus 424 aP~ILfIDEID 434 (794)
.|.+++++|+.
T Consensus 252 ~pd~~l~~e~r 262 (361)
T 2gza_A 252 KPTRILLAELR 262 (361)
T ss_dssp CCSEEEESCCC
T ss_pred CCCEEEEcCch
Confidence 89999999974
No 305
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.85 E-value=0.17 Score=50.72 Aligned_cols=54 Identities=24% Similarity=0.211 Sum_probs=31.7
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHH
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAk 383 (794)
..+|+++.-.+.+.+.|.+. .+..+..++... +...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 35688876566666655442 122333333211 1123679999999999998643
No 306
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.83 E-value=0.16 Score=55.07 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is 397 (794)
.+.-|.|+|+||+|||+|+.+++..+ |..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34568999999999999999998764 55544443
No 307
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.80 E-value=0.077 Score=59.49 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
.|..++++|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46679999999999999999999865 4555656554
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.79 E-value=0.04 Score=59.09 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=25.7
Q ss_pred hCCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+++...+.|+||+|+|||+|++.|++..
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345566679999999999999999999876
No 309
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.78 E-value=0.12 Score=58.08 Aligned_cols=40 Identities=28% Similarity=0.495 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC---CcEEEEecchhHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVE 403 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg---vpfi~is~se~~~ 403 (794)
.+..|+|+|.||+|||++++.++..++ .+...++..++..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~ 80 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR 80 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh
Confidence 355699999999999999999998764 5566666554443
No 310
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.72 E-value=0.084 Score=61.83 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCcEEEEecch
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASE 400 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~se 400 (794)
-.|+.||||||||+++-.+... .+.++..+..+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 3789999999999766555433 266777776653
No 311
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.72 E-value=0.035 Score=57.20 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecchhH
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se~~ 402 (794)
+-|.||||+|||++|+.++..++++.++ ..+++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is--~gdll 43 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIS--TGDML 43 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEC--HHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeee--chHHH
Confidence 6789999999999999999999988764 44443
No 312
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.71 E-value=0.046 Score=59.92 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
..+|.-++|+||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4456679999999999999999999865
No 313
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.65 E-value=0.042 Score=54.52 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEecch
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~se 400 (794)
+|++|++|+|||++|..++.. +.|.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 314
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.64 E-value=0.12 Score=52.23 Aligned_cols=56 Identities=16% Similarity=0.078 Sum_probs=33.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKA 384 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAkA 384 (794)
+..+|+++.-.+++.+.|.+. .+..+..++... +...+.+++.+|+|+|||..+-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 456799986555555555431 133333333221 11235699999999999977443
No 315
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.62 E-value=0.03 Score=59.31 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC---CcEEEEecchhH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFV 402 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elg---vpfi~is~se~~ 402 (794)
+.-|.|.||+|+||||+|+.++..++ ..+..+++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 34588999999999999999998765 445556665553
No 316
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.58 E-value=0.17 Score=55.27 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
-+.|+||.|+|||+|.++|+.-+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999995443
No 317
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.55 E-value=0.2 Score=60.40 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
....++|+||.|+|||++.|.+++-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999999864
No 318
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.55 E-value=0.018 Score=56.75 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elg 390 (794)
-|.|.||+|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998874
No 319
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.54 E-value=0.17 Score=56.57 Aligned_cols=70 Identities=29% Similarity=0.277 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH-------Hh---hc---------cchHH-HHHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY---VG---------MGASR-VRDLFARA 420 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~-------~~---vG---------~~~~~-vr~lF~~A 420 (794)
+|..++++||+|+|||+++..+|..+ +..+..+.+.-+.. .+ .+ ..+.. .++.++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999765 44555554432110 00 00 11122 25666766
Q ss_pred HhcCCEEEEEccc
Q 003806 421 KKEAPSIIFIDEI 433 (794)
Q Consensus 421 r~~aP~ILfIDEI 433 (794)
+.....+++||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5455668888754
No 320
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.54 E-value=0.038 Score=56.46 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=27.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (794)
.-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358899999999999999999999999865
No 321
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.45 E-value=0.15 Score=49.67 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.6
Q ss_pred CeEEEEcCCCChHHHHHH
Q 003806 366 RGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAk 383 (794)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999997554
No 322
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.34 E-value=0.049 Score=55.31 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
....-+.|.||+|+|||||.+++++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4455688999999999999999999764
No 323
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.28 E-value=0.12 Score=55.84 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCC-----cEEEEecchh
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----PFISCSASEF 401 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elgv-----pfi~is~se~ 401 (794)
..|.-+.|.||+|+||||+++.+++.++. .+..++...+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 45567889999999999999999987642 3444554443
No 324
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.26 E-value=0.091 Score=59.55 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el 389 (794)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 359999999999999999887653
No 325
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.23 E-value=0.066 Score=53.41 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=40.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhH---H----Hhhccc-----hHHHHHHHHHHHhcCCEEEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV---E----LYVGMG-----ASRVRDLFARAKKEAPSIIFI 430 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~---~----~~vG~~-----~~~vr~lF~~Ar~~aP~ILfI 430 (794)
+-.+++||+|+|||+.+-.++.++ |..++.+...--. + ...|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 457889999999999988887764 6666555421100 0 011110 0111245554432 3569999
Q ss_pred cccchh
Q 003806 431 DEIDAV 436 (794)
Q Consensus 431 DEIDaL 436 (794)
||+..+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 998775
No 326
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.20 E-value=0.2 Score=59.14 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.4
Q ss_pred CCCeEEEEcCCCChHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAk 383 (794)
..+.+++.||+|+|||+.+-
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35789999999999999873
No 327
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.19 E-value=0.23 Score=49.18 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=15.9
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 003806 366 RGVLLVGLPGTGKTLLAKA 384 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkA 384 (794)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5699999999999986443
No 328
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.14 E-value=0.052 Score=55.34 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC--CcEEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISC 396 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg--vpfi~i 396 (794)
.+.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 344588899999999999999999875 455543
No 329
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.13 E-value=0.38 Score=51.88 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=33.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHHHHHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVA 386 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~---~~pkgVLL~GPPGTGKT~LAkALA 386 (794)
+..+|+++.-.++..+.|.+. -+..|..++.... ...+.+++.+|+|+|||..+-..+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 345788876556666555432 1233333332211 123569999999999997665443
No 330
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.92 E-value=0.05 Score=57.82 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
.+.-+.|.||+|+|||||++.+++.++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445588999999999999999999765
No 331
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.80 E-value=0.085 Score=67.00 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++...+-|+||+|+|||+|++.+.+-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4555669999999999999999998744
No 332
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.79 E-value=0.065 Score=62.20 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC----CcEEEEecchh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEF 401 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg----vpfi~is~se~ 401 (794)
.+..|+|.|+||+|||++|++++..++ .+++.++...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 345689999999999999999999875 78888875443
No 333
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.75 E-value=0.24 Score=58.28 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHh--hh--CCCCCCeEEEEcCCCChHHHHHHHHH-H---hcCCcEEEEec
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYI--RL--GARPPRGVLLVGLPGTGKTLLAKAVA-G---EAEVPFISCSA 398 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~--~l--g~~~pkgVLL~GPPGTGKT~LAkALA-~---elgvpfi~is~ 398 (794)
+..+|+++.-.+.+++.+.+. . +..+..++ .+ .....+.+++.||+|+|||+.+-..+ . ..+...+++..
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~-g-~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKR-G-IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTT-S-CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred ccCcHHHcCCCHHHHHHHHhC-C-CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 346688775444444444331 0 11111111 11 13446789999999999999984433 2 12455555543
No 334
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.65 E-value=0.057 Score=53.61 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.+.|+||+|+|||||++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 335
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.58 E-value=0.071 Score=52.35 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
++.+-+.|.||+|+|||+|++.++..+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 345578999999999999999998764
No 336
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.57 E-value=0.28 Score=52.61 Aligned_cols=58 Identities=22% Similarity=0.104 Sum_probs=33.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCC---CCCeEEEEcCCCChHHHHHHHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGAR---PPRGVLLVGLPGTGKTLLAKAVA 386 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~---~pkgVLL~GPPGTGKT~LAkALA 386 (794)
+..+|+|+.-.++..+.|.+. -+..+..++..... ..+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 346799887666666555441 12223223222111 13569999999999998665443
No 337
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.53 E-value=0.037 Score=57.05 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc-CCcEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFI 394 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el-gvpfi 394 (794)
.+.-|.|.|++|+||||+++.|+..+ +.+++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 45568999999999999999999998 54443
No 338
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.50 E-value=0.34 Score=58.14 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
...++|+||.|+|||++.|.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456899999999999999999863
No 339
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.41 E-value=0.36 Score=48.90 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc--CCcEEEEe
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCS 397 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el--gvpfi~is 397 (794)
.+..+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568899999999999999998654 55555554
No 340
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.41 E-value=0.15 Score=52.02 Aligned_cols=30 Identities=13% Similarity=-0.002 Sum_probs=23.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 003806 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (794)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is 397 (794)
.+++||.|+|||+.+-.++..+ |..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999888887644 66666664
No 341
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.38 E-value=0.34 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVA 386 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA 386 (794)
.++.+++.+|+|+|||+.+-..+
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34789999999999998765443
No 342
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.33 E-value=0.082 Score=53.62 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCcE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPF 393 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el-gvpf 393 (794)
|+-+.|.|++|+|||++++.++..+ +..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 4568999999999999999999998 4433
No 343
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.30 E-value=0.077 Score=56.67 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.+.-+.|+||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999999865
No 344
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.29 E-value=0.076 Score=56.86 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
..+.-+.|.||+|+|||||++.+++.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445568899999999999999999865
No 345
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.21 E-value=0.093 Score=52.05 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi 394 (794)
.+|+||.|++|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 468999999999999999999874 54443
No 346
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.20 E-value=0.34 Score=56.65 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+..-+.|.||.|+|||||.+.+++..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34458899999999999999999854
No 347
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.18 E-value=0.35 Score=55.49 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=31.1
Q ss_pred CCcccccccCChHhHHHHHHHHHH--hcChhHHhhhCC-----CCCCeEEEEcCCCChHHHHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEF--LRSPDKYIRLGA-----RPPRGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~--Lk~p~~~~~lg~-----~~pkgVLL~GPPGTGKT~LAk 383 (794)
+.++|+++.........+.+.+.. +..+..++...+ ...+.+++.+|+|+|||..+-
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHH
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHH
Confidence 456777776332233344444333 222333332211 135679999999999998533
No 348
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.12 E-value=1.1 Score=47.54 Aligned_cols=57 Identities=19% Similarity=0.063 Sum_probs=32.9
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHHHHHH
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAkALA~ 387 (794)
.+|+++.-.+.+.+.|.+. -+..+..++... +...+.+++.+|+|+|||..+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 4577775556655555442 123233333221 12246799999999999987654443
No 349
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.12 E-value=0.11 Score=48.20 Aligned_cols=21 Identities=52% Similarity=0.909 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~ 387 (794)
.+++.|+||+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 350
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.11 E-value=0.32 Score=52.26 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=30.9
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHHHH
Q 003806 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKAV 385 (794)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAkAL 385 (794)
.+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-..
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHH
Confidence 4677766555555555431 122232222211 112456999999999999875433
No 351
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.05 E-value=0.2 Score=54.01 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
....-+.|.||||+|||+|.+++++..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344458899999999999999999754
No 352
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.05 E-value=0.059 Score=55.22 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+.+..-+.|.||.|+|||||.+.+++-..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34455689999999999999999998654
No 353
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.04 E-value=0.47 Score=53.87 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.0
Q ss_pred CCCeEEEEcCCCChHHHHH
Q 003806 364 PPRGVLLVGLPGTGKTLLA 382 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LA 382 (794)
..+.+++.+|+|+|||+.+
T Consensus 110 ~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 3568999999999999853
No 354
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.92 E-value=0.36 Score=49.66 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+..|++.|++|+|||+|+.++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4469999999999999999998753
No 355
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.92 E-value=0.31 Score=61.72 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++..-+.|+||+|+|||+|++.+++..
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555669999999999999999999865
No 356
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.80 E-value=0.35 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.|+|.|++|+|||+|+.++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 49999999999999999998754
No 357
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.80 E-value=0.33 Score=49.56 Aligned_cols=55 Identities=25% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAk 383 (794)
+..+|+++.-.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||..+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 345688875555555444331 022233333221 1123679999999999998644
No 358
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.74 E-value=0.053 Score=55.14 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
....-+.|.||.|+|||||.+.+++-..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445588999999999999999998653
No 359
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.74 E-value=0.36 Score=55.54 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+...-+.|.||.|+|||+|++++++..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999854
No 360
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.72 E-value=0.83 Score=50.75 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEe
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS 397 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el-----gvpfi~is 397 (794)
...++|+||+|+|||+|++.+|+.. ++.++++-
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~l 211 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 211 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEE
Confidence 4459999999999999999998753 45555553
No 361
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.71 E-value=0.075 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+.. .-+.|.||.|+|||||.+.+++-..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445 6788999999999999999998653
No 362
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.61 E-value=0.069 Score=55.66 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+....-+.|.||.|+|||||.+++++-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34445588999999999999999998653
No 363
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.59 E-value=0.66 Score=45.24 Aligned_cols=24 Identities=46% Similarity=0.574 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
...|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999874
No 364
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.40 E-value=0.076 Score=53.53 Aligned_cols=23 Identities=43% Similarity=0.430 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
.-+.|.||.|+|||||++.+++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999975
No 365
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.39 E-value=0.12 Score=49.68 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elg 390 (794)
-.+|+||.|+|||+|++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999988765
No 366
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.38 E-value=0.24 Score=58.32 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHH-Hhc--CCcEEEEec
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVA-GEA--EVPFISCSA 398 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA-~el--gvpfi~is~ 398 (794)
.+.+++.||+|+|||+.+-..+ ..+ +...+++..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3579999999999999884332 221 445555543
No 367
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.37 E-value=0.11 Score=52.80 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (794)
..|-|+|..|||||++++.++. +|+|++..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 4689999999999999999988 89888653
No 368
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.36 E-value=0.1 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.++|.||+|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999863
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.34 E-value=0.12 Score=50.79 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is 397 (794)
.+-+.|.|++|+|||+|+..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3468899999999999999998864 45554444
No 370
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.31 E-value=0.091 Score=54.91 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=23.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+....-+.|.||.|+|||||++.+++-.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445568999999999999999999863
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.28 E-value=0.13 Score=50.53 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
....++|+|++|+|||+|+.++++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34569999999999999999999864
No 372
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.26 E-value=0.3 Score=52.87 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s 399 (794)
++++..|+|+|||..+-.++.+. +.+.+.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 69999999999999998886654 5566665543
No 373
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.26 E-value=0.56 Score=58.06 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVA 386 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA 386 (794)
...++|+||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4679999999999999999993
No 374
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.25 E-value=0.071 Score=54.78 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.+..-+.|.||.|+|||||.+.+++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444558999999999999999999865
No 375
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.23 E-value=0.089 Score=60.84 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC----CcEEEEecchhHH
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVE 403 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg----vpfi~is~se~~~ 403 (794)
.+..+.|+|++|+|||||+++||+.++ ..+..+++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 445689999999999999999999874 3455566665543
No 376
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.22 E-value=0.081 Score=55.07 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+.+..-+.|.||.|+|||||++.+++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34455699999999999999999998653
No 377
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.21 E-value=0.068 Score=55.47 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
...-+.|.||.|+|||||.+.+++-..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 444588999999999999999998753
No 378
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.20 E-value=0.1 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
-+.|.||+|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 379
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.11 E-value=0.084 Score=55.33 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+.+..-+.|.||.|+|||||++.+++...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44555689999999999999999998754
No 380
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.09 E-value=0.084 Score=55.21 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+....-+.|.||.|+|||||++.+++-..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34455688999999999999999998653
No 381
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.09 E-value=0.29 Score=52.16 Aligned_cols=56 Identities=18% Similarity=0.077 Sum_probs=32.6
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHHHH
Q 003806 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~---~~pkgVLL~GPPGTGKT~LAk 383 (794)
.+..+|+++.-.+.+.+.|... -+..+..++.... ...+.+++.+|+|+|||..+-
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 3456788886555655555442 1223332332211 113569999999999998743
No 382
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.05 E-value=0.086 Score=54.44 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
....-+.|.||.|+|||||.+.+++-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455889999999999999999985
No 383
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.01 E-value=0.25 Score=54.79 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~elgvpfi~is~s 399 (794)
.++|.+|+|+|||..+-.++...+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 499999999999999998888888777777655
No 384
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.96 E-value=0.076 Score=54.12 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
.+..-+.|.||.|+|||||.+.+++...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3455689999999999999999998653
No 385
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.91 E-value=0.98 Score=44.07 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|+|.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 386
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.91 E-value=0.12 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.+++.|++|+|||+|++++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 387
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.90 E-value=0.4 Score=55.27 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecchhHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~se~~~ 403 (794)
+.-++|+|+||+|||++|+.++..+ |.++..++...+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568999999999999999999875 56777777665543
No 388
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.89 E-value=0.4 Score=51.58 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
..+..+.|.|+||+|||+++.+++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999998754
No 389
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.86 E-value=0.079 Score=54.39 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
....-+.|.||.|+|||||.+.+++-..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444588999999999999999998653
No 390
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.86 E-value=0.12 Score=47.96 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+++.|++|+|||+|++++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999874
No 391
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.86 E-value=0.12 Score=55.95 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvp 392 (794)
..-+.|+||+|+|||||++.+++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987644
No 392
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.85 E-value=0.079 Score=54.72 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
.+..-+.|.||.|+|||||++.+++-..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445589999999999999999998753
No 393
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.83 E-value=0.076 Score=53.85 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
....-+.|.||.|+|||||.+.+++-..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444588999999999999999998653
No 394
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.78 E-value=0.094 Score=57.47 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
....-+.|.||+|||||||.+.+|+-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344458899999999999999999854
No 395
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.75 E-value=0.081 Score=55.70 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
....-+.|.||.|+|||||++.+++-..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3444589999999999999999998653
No 396
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.73 E-value=0.095 Score=54.53 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+....-+.|.||.|+|||||.+.+++-..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34455688999999999999999998653
No 397
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.70 E-value=0.097 Score=54.62 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
+....-+.|.||.|+|||||.+.+++-..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34455688999999999999999998653
No 398
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.64 E-value=0.14 Score=55.83 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKAV 385 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAL 385 (794)
.+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 357999999999999954444
No 399
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.62 E-value=0.094 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el 389 (794)
+.+.|+||+|+|||+|++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999875
No 400
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.56 E-value=0.13 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.+.|.||+|+|||||.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
No 401
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.53 E-value=0.087 Score=54.59 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
....-+.|.||.|+|||||.+.+++...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3445588999999999999999998754
No 402
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.47 E-value=0.1 Score=50.12 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
....+++.|++|+|||+|+.++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999864
No 403
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.40 E-value=0.12 Score=56.57 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
....-+.|.||+|+|||||.+.+|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344458899999999999999999854
No 404
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.40 E-value=0.23 Score=50.14 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is 397 (794)
+.-|.|.||+|+|||++++.++..+ |.+++...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 3447788999999999999998876 56665543
No 405
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.33 E-value=0.15 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.31 E-value=0.12 Score=56.56 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
....-+.|.||+|||||||.+.+|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344458899999999999999999854
No 407
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.31 E-value=0.093 Score=55.31 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
....-+.|.||.|+|||||.+.+++...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3445588999999999999999998753
No 408
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.30 E-value=0.14 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.+++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 409
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.29 E-value=0.11 Score=56.71 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
....-+.|.||+|+|||||.+.+|+-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344558899999999999999999854
No 410
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.26 E-value=0.18 Score=47.30 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
.+..|++.|++|+|||+|+.++.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999863
No 411
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.24 E-value=0.13 Score=48.45 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 412
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=90.20 E-value=1.3 Score=49.36 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=24.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc--------CCcEEEEecc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSAS 399 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el--------gvpfi~is~s 399 (794)
+.+++.+|+|+|||..+-..+-+. +...+.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 469999999999998877665443 5555555543
No 413
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.16 E-value=0.11 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
-++|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 414
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.15 E-value=0.13 Score=56.61 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
....-+.|.||+|||||||.+.+|+-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344558899999999999999999854
No 415
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.14 E-value=0.098 Score=54.24 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~elg 390 (794)
.+..-+.|.||.|+|||||.+.+++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445588999999999999999998653
No 416
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.12 E-value=0.16 Score=46.77 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+++.|++|+|||+|++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999874
No 417
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.02 E-value=0.17 Score=46.85 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 418
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.02 E-value=0.12 Score=56.60 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
...-+.|.||+|+|||||.+.+|+-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999854
No 419
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.99 E-value=0.24 Score=50.68 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-------CCcEEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC 396 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el-------gvpfi~i 396 (794)
+.-|.|.||+|+|||++++.++..+ |.+++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 3447888999999999999999876 6666544
No 420
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.98 E-value=0.16 Score=47.01 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el 389 (794)
..+++.|++|+|||+|++++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998753
No 421
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.94 E-value=0.14 Score=47.80 Aligned_cols=23 Identities=52% Similarity=0.736 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|++.|+||+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35999999999999999999764
No 422
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.85 E-value=0.17 Score=58.04 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgv 391 (794)
+..|+|.|.+|||||+++++||..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999874
No 423
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.81 E-value=0.45 Score=48.87 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=15.8
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 003806 366 RGVLLVGLPGTGKTLLAKA 384 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkA 384 (794)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 4699999999999987543
No 424
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=89.81 E-value=0.85 Score=45.76 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.3
Q ss_pred CeEEEEcCCCChHHHHHH
Q 003806 366 RGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAk 383 (794)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 569999999999998643
No 425
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.81 E-value=0.2 Score=46.52 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
+..+++.|++|+|||+|+.++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999764
No 426
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.77 E-value=0.42 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
+..|+|.|.||+|||+|+.++.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 446999999999999999999764
No 427
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.73 E-value=0.77 Score=58.14 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+++...+-|+||.|+|||+|++.+++..
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4455669999999999999999999743
No 428
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.71 E-value=0.17 Score=46.95 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999865
No 429
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.67 E-value=0.18 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 430
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.66 E-value=0.11 Score=56.69 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
....-+.|.||+|+|||||.+.+|+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344558899999999999999999854
No 431
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.64 E-value=0.16 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
...|++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 432
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.63 E-value=0.13 Score=56.53 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
...-+.|.||+|+|||||.+.+|+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 44458899999999999999999854
No 433
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.62 E-value=0.17 Score=46.84 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 434
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.61 E-value=0.33 Score=49.29 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~elgvpfi 394 (794)
++-|.|.|++|+|||++++.++..++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 455889999999999999999999876443
No 435
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.58 E-value=0.17 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 436
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.57 E-value=0.17 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..++|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999874
No 437
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.51 E-value=0.19 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 438
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.50 E-value=0.19 Score=56.62 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+-.++.|+||||||++++.++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3445789999999999999988754
No 439
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.40 E-value=0.2 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+++.|++|+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999999754
No 440
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.35 E-value=0.2 Score=51.57 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCc
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVP 392 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~el---gvp 392 (794)
.+.-|.|.|++|+|||++++.++..+ +.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35568899999999999999998865 555
No 441
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.35 E-value=0.17 Score=47.07 Aligned_cols=21 Identities=48% Similarity=0.737 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 003806 367 GVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~ 387 (794)
.+++.|++|+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999974
No 442
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.33 E-value=0.2 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.+++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 443
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.27 E-value=0.2 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|+|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 444
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.25 E-value=1.2 Score=49.76 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=24.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc--------CCcEEEEecc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSAS 399 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el--------gvpfi~is~s 399 (794)
+.+++.+|+|+|||..+-..+.+. +...+.+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 469999999999998876665433 4555555443
No 445
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.23 E-value=0.2 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
...|+++|++|+|||+|+.++.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 446
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.23 E-value=0.19 Score=58.73 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=24.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s 399 (794)
.+++.||||||||+++..++..+ +.++..+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 58899999999999888776543 4566666554
No 447
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.22 E-value=0.16 Score=56.26 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
+....-+.|.||+|||||||.+.+|+-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 344556999999999999999999984
No 448
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.19 E-value=0.09 Score=51.29 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=22.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.....-+.|.|++|+|||+|.+++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344459999999999999999997643
No 449
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.17 E-value=0.21 Score=46.15 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.+++.|++|+|||+|+.++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 450
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.16 E-value=0.17 Score=48.15 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
.-+.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999875
No 451
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.10 E-value=0.22 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
...|++.|++|+|||+|++++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446999999999999999999875
No 452
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.10 E-value=0.15 Score=53.32 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
..-+.|.||.|+|||||.+.+++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458899999999999999999876
No 453
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.08 E-value=0.14 Score=54.20 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+....-+.|.||.|+|||||.+.+++..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444558999999999999999999864
No 454
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.07 E-value=0.97 Score=46.58 Aligned_cols=69 Identities=19% Similarity=0.076 Sum_probs=37.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH---hcCCcEEEEecc-------hhHHHhhccc-----hHHHHHHHHHHHhcCCEEEE
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAG---EAEVPFISCSAS-------EFVELYVGMG-----ASRVRDLFARAKKEAPSIIF 429 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~---elgvpfi~is~s-------e~~~~~vG~~-----~~~vr~lF~~Ar~~aP~ILf 429 (794)
..-.+++||.|+|||+.+-..+. ..|..++.+... .+.+.. |.. .....++++.+ ....+|+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvVi 95 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIG 95 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEE
Confidence 34577899999999976666654 346666555421 111110 100 00112344444 3356999
Q ss_pred Ecccchh
Q 003806 430 IDEIDAV 436 (794)
Q Consensus 430 IDEIDaL 436 (794)
|||+.-+
T Consensus 96 IDEaQF~ 102 (234)
T 2orv_A 96 IDEGQFF 102 (234)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999765
No 455
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.94 E-value=0.2 Score=56.62 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
.+....-+.|.||.|+|||||+|.+++..
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34455569999999999999999999864
No 456
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.93 E-value=0.26 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
+..|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345999999999999999999875
No 457
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.92 E-value=0.21 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|++.|++|+|||+|+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 458
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.84 E-value=0.23 Score=46.43 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el 389 (794)
..+++.|++|+|||+|++++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999999998743
No 459
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=88.69 E-value=0.57 Score=50.15 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=30.4
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhh-----CCCCCCeEEEEcCCCChHHHHHH
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRL-----GARPPRGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~l-----g~~~pkgVLL~GPPGTGKT~LAk 383 (794)
..+|+++.-.+...+.|.+. -+..|..++.. -...++.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 34577765555555554431 12222222221 11235779999999999998753
No 460
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.65 E-value=0.24 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.|++.|++|+|||+|+.++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998753
No 461
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.60 E-value=0.24 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|++.|++|+|||+|++++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35999999999999999999864
No 462
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.56 E-value=0.24 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999887654
No 463
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.55 E-value=0.23 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999875
No 464
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.55 E-value=0.24 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~el 389 (794)
.|++.|++|+|||+|+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 465
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.53 E-value=0.76 Score=48.40 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=31.2
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhh-----hCCCCCCeEEEEcCCCChHHHHH
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIR-----LGARPPRGVLLVGLPGTGKTLLA 382 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~-----lg~~~pkgVLL~GPPGTGKT~LA 382 (794)
..+|+++.-.+...+.|.+. .+..|..++. +-..+++.+++.+|+|+|||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45688876555555554431 1233322222 11224578999999999999764
No 466
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.53 E-value=0.25 Score=47.95 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
....|++.|++|+|||+|+.++.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 467
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.50 E-value=0.24 Score=47.45 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|+|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999874
No 468
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.43 E-value=0.25 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 469
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=88.43 E-value=1.2 Score=53.54 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
..|..+|+.||+|+|||..+-..+-.. |...+.+...
T Consensus 387 ~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 387 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 345679999999999999886654433 5566555543
No 470
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.39 E-value=0.24 Score=48.74 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
...+++.|++|+|||+|+..++...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999875
No 471
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.38 E-value=0.23 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+++.|++|+|||+|++++.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 472
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.33 E-value=0.23 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|++.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 473
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=88.21 E-value=0.83 Score=57.01 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=24.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (794)
+.+|++||+|+|||+.+-..+... +...+.+...
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 569999999999999876554433 5555555543
No 474
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=88.20 E-value=0.58 Score=51.99 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=31.3
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhh-----hCCCCCCeEEEEcCCCChHHHHHH
Q 003806 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIR-----LGARPPRGVLLVGLPGTGKTLLAK 383 (794)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~-----lg~~~pkgVLL~GPPGTGKT~LAk 383 (794)
..+|+++.-.++..+.|.+. -+..|..++. +-...++.+|+.+|+|+|||..+-
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHH
Confidence 34677776566655555431 1222222221 111245789999999999998743
No 475
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.16 E-value=1.4 Score=48.69 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=30.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHH
Q 003806 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLL 381 (794)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~---~~pkgVLL~GPPGTGKT~L 381 (794)
|..+|+++.-.+.+.+.|.+. -+..|..++...+ ...+.+++.+|+|+|||+.
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 446788875455555544331 1333333332221 1346799999999999984
No 476
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.09 E-value=0.33 Score=45.65 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
...+++.|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999865
No 477
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.04 E-value=0.28 Score=46.11 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|++.|++|+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45999999999999999999864
No 478
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.04 E-value=0.24 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999753
No 479
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.01 E-value=0.44 Score=49.17 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|.|.|+||+|||+|..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999875
No 480
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.00 E-value=0.53 Score=55.35 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHH
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAV 385 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAL 385 (794)
+....-+.|.||+|+|||||++.+
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTT
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHH
Confidence 344555899999999999999754
No 481
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.99 E-value=0.3 Score=47.32 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~ 387 (794)
+....|++.|++|+|||+|+.++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445699999999999999999965
No 482
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.95 E-value=0.22 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
No 483
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.94 E-value=0.3 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
+.-+.|.||.|+||||+++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 344789999999999999999987
No 484
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.92 E-value=2.3 Score=45.81 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
.+..++++|+||+|||+|..++++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456999999999999999999874
No 485
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.91 E-value=0.28 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|++.|++|+|||+|++++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 486
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.90 E-value=0.24 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHH
Q 003806 363 RPPRGVLLVGLPGTGKTLLAKAVAG 387 (794)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkALA~ 387 (794)
+.+..|++.|++|+|||+|+.++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3455799999999999999999874
No 487
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.86 E-value=0.29 Score=48.36 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 003806 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkALA~el 389 (794)
+..++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999999875
No 488
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=87.85 E-value=0.29 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+++.|++|+|||+|++++.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999873
No 489
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.84 E-value=0.29 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
No 490
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=87.78 E-value=0.37 Score=49.78 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|+|.|+||+|||+|..++.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999873
No 491
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=87.76 E-value=0.24 Score=47.13 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
....+++.|++|+|||+|+.++.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4456999999999999999999864
No 492
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.75 E-value=0.29 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 003806 367 GVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 367 gVLL~GPPGTGKT~LAkALA~e 388 (794)
.|+|.|++|+|||+|+.++.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999875
No 493
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=87.65 E-value=0.83 Score=51.63 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCChHHHHHHH
Q 003806 365 PRGVLLVGLPGTGKTLLAKA 384 (794)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkA 384 (794)
++.+++.+|+|+|||..+-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 46799999999999987443
No 494
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.63 E-value=0.28 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCCCe--EEEEcCCCChHHHHHHHHHHh
Q 003806 362 ARPPRG--VLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 362 ~~~pkg--VLL~GPPGTGKT~LAkALA~e 388 (794)
++.+.. +.|+||+|+|||||++++++.
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 334444 889999999999999999986
No 495
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.63 E-value=0.46 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~e 388 (794)
...++++.||+|+|||++++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998765
No 496
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.62 E-value=0.31 Score=49.76 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC----CcEEE
Q 003806 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFIS 395 (794)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkALA~elg----vpfi~ 395 (794)
.+.-|.|.|++|+|||++++.++..++ .+++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 344577889999999999999998653 35554
No 497
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.57 E-value=0.3 Score=46.61 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..|++.|++|+|||+|+.++.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999874
No 498
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.55 E-value=0.48 Score=47.83 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-cEEEEecchh
Q 003806 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEF 401 (794)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkALA~elgv-pfi~is~se~ 401 (794)
..|++-|+|+|.||+||+++|+.+...+|. .+..++.++-
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~ 48 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGP 48 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHH
Confidence 456677999999999999999999887753 2444555544
No 499
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=87.51 E-value=0.24 Score=46.62 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+++.|++|+|||+|+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999874
No 500
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.49 E-value=0.31 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 003806 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (794)
Q Consensus 366 kgVLL~GPPGTGKT~LAkALA~e 388 (794)
..+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999875
Done!