Query 003807
Match_columns 794
No_of_seqs 674 out of 3889
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 12:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 2E-124 4E-129 1028.9 48.6 612 131-775 108-735 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 7.8E-98 2E-102 849.8 43.2 473 292-776 95-592 (596)
3 KOG0731 AAA+-type ATPase conta 100.0 1.4E-91 2.9E-96 809.8 42.1 428 350-780 303-754 (774)
4 CHL00176 ftsH cell division pr 100.0 1.2E-83 2.6E-88 749.7 50.8 426 350-777 175-628 (638)
5 PRK10733 hflB ATP-dependent me 100.0 3.2E-81 6.9E-86 733.9 50.9 427 349-775 143-596 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 1.4E-78 3.1E-83 693.3 51.8 424 348-773 45-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 2.4E-52 5.2E-57 446.1 24.4 242 350-591 143-397 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.3E-52 1.1E-56 506.4 28.7 300 383-706 1622-1984(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.4E-45 2.9E-50 417.4 23.1 238 350-587 426-675 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 4.1E-44 8.9E-49 400.2 23.9 238 351-588 504-771 (802)
11 PF01434 Peptidase_M41: Peptid 100.0 1.4E-43 3E-48 364.5 20.7 197 575-771 1-213 (213)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 7.1E-41 1.5E-45 374.3 21.4 216 354-569 186-414 (802)
13 KOG0727 26S proteasome regulat 100.0 2.1E-40 4.6E-45 339.8 20.2 238 351-588 148-398 (408)
14 KOG0729 26S proteasome regulat 100.0 9.1E-41 2E-45 344.5 17.3 243 350-592 169-424 (435)
15 KOG0728 26S proteasome regulat 100.0 7.3E-40 1.6E-44 335.6 20.2 240 353-592 142-394 (404)
16 KOG0736 Peroxisome assembly fa 100.0 1.5E-39 3.3E-44 370.9 23.0 239 349-588 663-934 (953)
17 KOG0726 26S proteasome regulat 100.0 2.7E-40 5.9E-45 344.4 14.5 240 351-590 178-430 (440)
18 COG1223 Predicted ATPase (AAA+ 100.0 1.8E-39 4E-44 334.4 19.8 230 351-585 114-354 (368)
19 KOG0652 26S proteasome regulat 100.0 1.9E-39 4.2E-44 334.0 18.2 239 350-588 163-414 (424)
20 PTZ00454 26S protease regulato 100.0 2E-37 4.4E-42 345.4 26.2 241 350-590 137-390 (398)
21 KOG0738 AAA+-type ATPase [Post 100.0 4.2E-38 9.1E-43 338.5 19.2 239 346-587 200-470 (491)
22 PRK03992 proteasome-activating 100.0 2.1E-36 4.5E-41 336.9 26.0 243 351-593 124-379 (389)
23 PTZ00361 26 proteosome regulat 100.0 4.1E-36 8.9E-41 337.6 23.3 239 351-589 176-427 (438)
24 COG0464 SpoVK ATPases of the A 100.0 5.4E-36 1.2E-40 342.5 24.5 237 350-586 234-483 (494)
25 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-35 6.3E-40 351.2 25.2 235 352-586 447-710 (733)
26 KOG0735 AAA+-type ATPase [Post 100.0 5.5E-35 1.2E-39 331.1 22.1 216 354-569 663-888 (952)
27 TIGR01242 26Sp45 26S proteasom 100.0 8.8E-34 1.9E-38 312.9 25.3 236 351-586 115-363 (364)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 8.3E-34 1.8E-38 323.0 24.2 231 353-588 223-465 (489)
29 KOG0651 26S proteasome regulat 100.0 1.1E-34 2.4E-39 305.4 13.1 235 353-587 127-374 (388)
30 KOG0739 AAA+-type ATPase [Post 100.0 1.2E-34 2.7E-39 303.1 12.8 206 345-553 120-329 (439)
31 KOG0737 AAA+-type ATPase [Post 100.0 1E-33 2.2E-38 304.7 19.0 221 347-569 81-314 (386)
32 TIGR03689 pup_AAA proteasome A 100.0 1.1E-32 2.3E-37 314.3 24.5 254 348-601 172-493 (512)
33 PLN00020 ribulose bisphosphate 100.0 1.6E-30 3.4E-35 282.7 22.7 257 353-617 110-394 (413)
34 KOG0730 AAA+-type ATPase [Post 100.0 6.5E-30 1.4E-34 290.4 19.7 233 353-592 180-422 (693)
35 TIGR01243 CDC48 AAA family ATP 100.0 4.5E-29 9.8E-34 298.1 24.3 236 353-588 173-437 (733)
36 KOG0732 AAA+-type ATPase conta 100.0 5E-29 1.1E-33 296.4 18.7 241 352-592 259-531 (1080)
37 KOG0741 AAA+-type ATPase [Post 100.0 2.3E-28 4.9E-33 270.7 14.7 234 354-587 215-491 (744)
38 KOG0740 AAA+-type ATPase [Post 99.9 1.7E-27 3.6E-32 264.1 15.7 239 346-587 141-405 (428)
39 PF00004 AAA: ATPase family as 99.9 2.6E-21 5.7E-26 180.1 13.0 129 394-523 1-132 (132)
40 KOG0743 AAA+-type ATPase [Post 99.9 4E-21 8.6E-26 212.6 15.2 182 350-539 193-385 (457)
41 CHL00181 cbbX CbbX; Provisiona 99.8 3.9E-20 8.4E-25 198.9 20.2 177 357-541 22-213 (287)
42 TIGR02881 spore_V_K stage V sp 99.8 6.5E-20 1.4E-24 194.0 19.3 177 356-541 4-195 (261)
43 TIGR02880 cbbX_cfxQ probable R 99.8 1.1E-19 2.5E-24 194.9 15.6 177 357-541 20-212 (284)
44 TIGR02902 spore_lonB ATP-depen 99.8 9.3E-19 2E-23 202.6 16.9 258 299-584 6-330 (531)
45 PRK00080 ruvB Holliday junctio 99.8 2E-17 4.3E-22 180.6 21.2 208 352-586 19-250 (328)
46 TIGR00635 ruvB Holliday juncti 99.8 2.3E-17 5E-22 177.2 21.1 203 356-585 2-228 (305)
47 PF05496 RuvB_N: Holliday junc 99.8 1.6E-17 3.4E-22 171.5 18.8 163 353-542 19-197 (233)
48 KOG0742 AAA+-type ATPase [Post 99.8 3.6E-18 7.8E-23 185.7 13.5 178 355-541 352-532 (630)
49 TIGR02639 ClpA ATP-dependent C 99.7 3.9E-17 8.5E-22 195.8 18.6 215 353-587 177-430 (731)
50 TIGR00763 lon ATP-dependent pr 99.7 8.9E-17 1.9E-21 193.8 21.3 163 359-537 321-505 (775)
51 COG2256 MGS1 ATPase related to 99.7 5.4E-16 1.2E-20 169.8 22.2 201 353-586 19-238 (436)
52 COG2255 RuvB Holliday junction 99.7 3.4E-16 7.4E-21 164.9 18.5 209 353-588 21-253 (332)
53 PRK11034 clpA ATP-dependent Cl 99.7 2.3E-16 5E-21 188.6 18.5 213 355-587 183-434 (758)
54 PRK14962 DNA polymerase III su 99.7 8.6E-16 1.9E-20 175.5 21.4 200 352-584 8-240 (472)
55 KOG0744 AAA+-type ATPase [Post 99.7 5E-17 1.1E-21 173.2 10.3 181 357-539 141-342 (423)
56 PRK14956 DNA polymerase III su 99.7 9.7E-16 2.1E-20 173.9 19.7 197 351-583 11-243 (484)
57 COG0464 SpoVK ATPases of the A 99.7 1.3E-15 2.9E-20 174.8 20.9 210 377-588 4-228 (494)
58 PRK04195 replication factor C 99.7 1.5E-15 3.3E-20 174.2 21.1 207 348-583 4-222 (482)
59 PRK14961 DNA polymerase III su 99.7 2.6E-15 5.7E-20 166.4 20.4 206 351-583 9-241 (363)
60 PRK12323 DNA polymerase III su 99.7 9.7E-16 2.1E-20 178.0 17.4 201 351-581 9-244 (700)
61 PRK07003 DNA polymerase III su 99.7 1.7E-15 3.8E-20 177.8 19.2 195 351-581 9-239 (830)
62 PRK13342 recombination factor 99.7 7.6E-15 1.6E-19 165.3 23.7 197 353-587 7-220 (413)
63 PLN03025 replication factor C 99.6 4.8E-15 1E-19 161.4 19.5 200 348-582 3-219 (319)
64 PRK14960 DNA polymerase III su 99.6 3.4E-15 7.3E-20 173.9 19.3 199 352-583 9-240 (702)
65 PRK06645 DNA polymerase III su 99.6 5.4E-15 1.2E-19 170.0 20.8 208 349-583 12-253 (507)
66 TIGR02928 orc1/cdc6 family rep 99.6 1.6E-14 3.4E-19 158.8 23.6 212 358-586 15-274 (365)
67 PRK14958 DNA polymerase III su 99.6 3.1E-15 6.7E-20 172.5 18.5 196 351-582 9-240 (509)
68 PRK00149 dnaA chromosomal repl 99.6 4.9E-15 1.1E-19 168.6 19.5 183 392-587 149-350 (450)
69 KOG0736 Peroxisome assembly fa 99.6 3.9E-15 8.5E-20 172.2 18.7 224 356-587 399-654 (953)
70 TIGR03345 VI_ClpV1 type VI sec 99.6 3.3E-15 7.1E-20 181.4 19.0 211 352-583 181-428 (852)
71 PRK12402 replication factor C 99.6 1.1E-14 2.4E-19 157.8 21.1 208 348-584 5-247 (337)
72 TIGR00362 DnaA chromosomal rep 99.6 1.1E-14 2.3E-19 163.5 20.9 215 353-588 105-339 (405)
73 PHA02544 44 clamp loader, smal 99.6 1.1E-14 2.3E-19 157.4 20.0 163 347-537 10-173 (316)
74 KOG0735 AAA+-type ATPase [Post 99.6 7.2E-15 1.6E-19 168.7 19.4 225 390-617 430-682 (952)
75 PRK07994 DNA polymerase III su 99.6 1.2E-14 2.5E-19 170.8 20.8 195 353-583 11-241 (647)
76 PRK14088 dnaA chromosomal repl 99.6 1.1E-14 2.3E-19 165.5 19.9 217 352-588 99-334 (440)
77 PRK14964 DNA polymerase III su 99.6 1.2E-14 2.5E-19 166.4 20.1 196 352-583 7-238 (491)
78 PRK14949 DNA polymerase III su 99.6 1.1E-14 2.4E-19 173.7 20.2 201 351-581 9-239 (944)
79 PRK14963 DNA polymerase III su 99.6 1.9E-14 4.1E-19 165.8 21.4 198 352-583 8-237 (504)
80 PRK08691 DNA polymerase III su 99.6 1.1E-14 2.4E-19 170.8 19.4 204 351-584 9-242 (709)
81 TIGR02397 dnaX_nterm DNA polym 99.6 1.7E-14 3.7E-19 157.8 19.6 202 350-584 6-240 (355)
82 PRK00411 cdc6 cell division co 99.6 9.7E-14 2.1E-18 154.3 24.4 214 356-586 28-282 (394)
83 PRK10865 protein disaggregatio 99.6 1E-14 2.2E-19 177.4 17.6 170 352-542 172-359 (857)
84 PRK14951 DNA polymerase III su 99.6 2.9E-14 6.2E-19 167.1 20.4 199 351-582 9-245 (618)
85 PRK05563 DNA polymerase III su 99.6 4.1E-14 8.9E-19 165.0 21.7 195 352-582 10-240 (559)
86 PRK07764 DNA polymerase III su 99.6 2.6E-14 5.7E-19 172.3 20.2 206 351-582 8-242 (824)
87 PRK14959 DNA polymerase III su 99.6 2.5E-14 5.3E-19 167.0 18.9 201 350-583 8-241 (624)
88 PRK14952 DNA polymerase III su 99.6 4.3E-14 9.4E-19 164.9 20.5 206 352-583 7-241 (584)
89 PRK14969 DNA polymerase III su 99.6 4.1E-14 9E-19 164.0 19.5 202 352-583 10-241 (527)
90 PRK14957 DNA polymerase III su 99.6 6.5E-14 1.4E-18 162.2 20.9 199 352-583 10-241 (546)
91 PRK14086 dnaA chromosomal repl 99.6 6.8E-14 1.5E-18 162.8 20.9 185 392-588 315-517 (617)
92 TIGR03346 chaperone_ClpB ATP-d 99.6 3.1E-14 6.7E-19 173.5 18.2 196 353-569 168-399 (852)
93 TIGR03420 DnaA_homol_Hda DnaA 99.6 8.8E-14 1.9E-18 142.6 18.8 196 355-583 12-225 (226)
94 PRK13341 recombination factor 99.6 8E-14 1.7E-18 166.3 21.0 204 350-586 20-247 (725)
95 PRK14965 DNA polymerase III su 99.6 5.7E-14 1.2E-18 164.4 18.7 198 352-582 10-240 (576)
96 PRK14970 DNA polymerase III su 99.6 1.2E-13 2.6E-18 152.8 20.2 206 351-583 10-230 (367)
97 PRK12422 chromosomal replicati 99.6 1.5E-13 3.4E-18 156.2 21.3 187 391-589 141-346 (445)
98 PRK08903 DnaA regulatory inact 99.6 2E-13 4.4E-18 141.0 20.2 195 352-584 12-224 (227)
99 PRK06893 DNA replication initi 99.6 1.2E-13 2.6E-18 143.9 18.3 202 353-583 11-227 (229)
100 PRK06305 DNA polymerase III su 99.6 1.7E-13 3.8E-18 156.1 20.7 199 352-583 11-243 (451)
101 PRK07133 DNA polymerase III su 99.6 1.3E-13 2.7E-18 163.2 20.0 207 350-583 10-240 (725)
102 PRK05896 DNA polymerase III su 99.6 9.2E-14 2E-18 161.5 18.6 199 351-582 9-240 (605)
103 CHL00095 clpC Clp protease ATP 99.5 5.5E-14 1.2E-18 170.8 17.2 162 355-537 176-354 (821)
104 PRK07940 DNA polymerase III su 99.5 7.1E-14 1.5E-18 156.6 16.2 158 356-535 3-187 (394)
105 COG0466 Lon ATP-dependent Lon 99.5 4.7E-14 1E-18 163.2 14.8 164 358-537 323-508 (782)
106 PRK09111 DNA polymerase III su 99.5 3.3E-13 7.2E-18 158.2 21.5 205 349-583 15-254 (598)
107 PTZ00112 origin recognition co 99.5 4.1E-13 8.8E-18 158.7 21.7 213 358-588 755-1008(1164)
108 PRK14953 DNA polymerase III su 99.5 2.9E-13 6.4E-18 155.4 20.2 204 350-583 8-241 (486)
109 KOG0989 Replication factor C, 99.5 1.9E-13 4.1E-18 145.7 17.0 177 347-553 25-218 (346)
110 PRK08451 DNA polymerase III su 99.5 4.3E-13 9.4E-18 154.8 20.9 196 351-582 7-238 (535)
111 PRK06647 DNA polymerase III su 99.5 3.6E-13 7.9E-18 157.0 20.0 202 352-583 10-241 (563)
112 PRK00440 rfc replication facto 99.5 7.8E-13 1.7E-17 142.2 20.9 203 347-584 6-224 (319)
113 PRK14955 DNA polymerase III su 99.5 2.6E-13 5.7E-18 152.3 17.8 207 351-583 9-254 (397)
114 KOG2004 Mitochondrial ATP-depe 99.5 2.5E-13 5.4E-18 156.5 17.7 166 358-538 411-597 (906)
115 KOG2028 ATPase related to the 99.5 1.7E-13 3.6E-18 148.2 14.9 154 352-538 132-295 (554)
116 PRK14948 DNA polymerase III su 99.5 6.3E-13 1.4E-17 156.6 20.6 204 350-581 8-240 (620)
117 PRK08727 hypothetical protein; 99.5 1.3E-12 2.8E-17 136.7 20.5 172 392-584 42-229 (233)
118 PRK14087 dnaA chromosomal repl 99.5 8.1E-13 1.8E-17 150.6 20.5 183 392-586 142-348 (450)
119 PRK13407 bchI magnesium chelat 99.5 2.8E-13 6E-18 148.8 16.0 209 354-587 4-307 (334)
120 PRK08084 DNA replication initi 99.5 1.1E-12 2.3E-17 137.4 19.6 197 354-583 18-233 (235)
121 TIGR02640 gas_vesic_GvpN gas v 99.5 2E-12 4.3E-17 137.5 21.7 131 392-537 22-198 (262)
122 PRK10787 DNA-binding ATP-depen 99.5 7.8E-13 1.7E-17 159.5 20.5 165 357-538 320-507 (784)
123 PRK14954 DNA polymerase III su 99.5 1.4E-12 2.9E-17 153.4 21.2 206 352-583 10-254 (620)
124 PRK05342 clpX ATP-dependent pr 99.5 1.1E-12 2.4E-17 147.8 19.3 133 355-487 67-214 (412)
125 TIGR02903 spore_lon_C ATP-depe 99.5 2.3E-12 5.1E-17 152.0 21.3 210 351-585 147-429 (615)
126 PRK14950 DNA polymerase III su 99.5 1.5E-12 3.3E-17 152.8 18.9 205 351-582 9-241 (585)
127 COG2812 DnaX DNA polymerase II 99.5 6.8E-13 1.5E-17 151.9 15.0 200 352-581 10-239 (515)
128 PRK05642 DNA replication initi 99.4 5.3E-12 1.1E-16 132.2 18.9 172 391-583 45-232 (234)
129 PRK14971 DNA polymerase III su 99.4 6E-12 1.3E-16 148.3 21.5 199 352-583 11-243 (614)
130 PF00308 Bac_DnaA: Bacterial d 99.4 2.6E-12 5.7E-17 133.3 16.0 168 354-543 4-185 (219)
131 COG1474 CDC6 Cdc6-related prot 99.4 8.1E-12 1.7E-16 139.0 20.5 208 360-586 19-265 (366)
132 CHL00081 chlI Mg-protoporyphyr 99.4 2.7E-12 5.9E-17 141.6 16.4 211 354-589 13-325 (350)
133 TIGR00390 hslU ATP-dependent p 99.4 1.5E-12 3.2E-17 145.6 13.5 172 360-533 14-342 (441)
134 COG0593 DnaA ATPase involved i 99.4 1.4E-11 3E-16 137.8 20.8 221 351-591 80-318 (408)
135 TIGR00382 clpX endopeptidase C 99.4 6.5E-12 1.4E-16 141.4 18.2 146 356-501 74-247 (413)
136 PRK06620 hypothetical protein; 99.4 7.2E-12 1.6E-16 129.7 17.0 157 392-583 45-213 (214)
137 PRK05201 hslU ATP-dependent pr 99.4 2.1E-12 4.6E-17 144.4 13.6 173 360-534 17-345 (443)
138 COG3829 RocR Transcriptional r 99.4 1E-12 2.2E-17 149.1 10.7 198 355-580 242-491 (560)
139 PRK11034 clpA ATP-dependent Cl 99.4 3.3E-12 7.1E-17 153.3 15.4 165 359-538 459-667 (758)
140 cd00009 AAA The AAA+ (ATPases 99.4 8.6E-12 1.9E-16 115.6 14.8 120 391-522 19-150 (151)
141 PF05673 DUF815: Protein of un 99.4 2.9E-11 6.2E-16 126.9 19.3 186 351-571 20-232 (249)
142 TIGR02639 ClpA ATP-dependent C 99.4 5.7E-12 1.2E-16 151.6 16.1 166 358-539 454-664 (731)
143 TIGR02030 BchI-ChlI magnesium 99.4 1.3E-11 2.7E-16 136.0 17.2 206 356-588 2-311 (337)
144 TIGR02442 Cob-chelat-sub cobal 99.3 1.6E-11 3.4E-16 145.6 17.7 206 356-588 2-306 (633)
145 TIGR01650 PD_CobS cobaltochela 99.3 1.5E-11 3.2E-16 134.2 13.1 138 392-539 65-235 (327)
146 PRK15424 propionate catabolism 99.3 1.6E-11 3.4E-16 142.5 13.9 200 355-580 216-479 (538)
147 COG1224 TIP49 DNA helicase TIP 99.3 1.5E-10 3.2E-15 125.7 20.2 89 494-585 322-431 (450)
148 COG0542 clpA ATP-binding subun 99.3 8.1E-11 1.7E-15 139.8 18.9 180 346-545 158-354 (786)
149 COG2204 AtoC Response regulato 99.3 1.5E-11 3.3E-16 139.3 12.1 197 355-580 138-385 (464)
150 PRK09112 DNA polymerase III su 99.3 1.4E-10 3E-15 128.6 19.2 158 353-536 18-212 (351)
151 PRK07471 DNA polymerase III su 99.3 5.2E-11 1.1E-15 132.6 15.7 160 352-537 13-213 (365)
152 COG0714 MoxR-like ATPases [Gen 99.3 1.5E-10 3.2E-15 126.8 19.1 133 392-536 44-202 (329)
153 PRK09087 hypothetical protein; 99.2 1.1E-10 2.5E-15 121.8 15.5 164 393-586 46-222 (226)
154 COG3604 FhlA Transcriptional r 99.2 3.2E-11 6.9E-16 135.6 12.0 190 354-566 219-456 (550)
155 PRK05564 DNA polymerase III su 99.2 9.2E-11 2E-15 127.5 15.2 152 356-537 2-165 (313)
156 TIGR02329 propionate_PrpR prop 99.2 4.3E-11 9.3E-16 138.8 13.3 200 355-580 209-464 (526)
157 smart00382 AAA ATPases associa 99.2 1.1E-10 2.3E-15 106.8 12.6 126 391-524 2-147 (148)
158 TIGR01817 nifA Nif-specific re 99.2 3.9E-11 8.3E-16 139.6 12.0 198 354-580 192-439 (534)
159 PRK13531 regulatory ATPase Rav 99.2 6.5E-10 1.4E-14 126.8 20.6 204 359-589 21-286 (498)
160 PHA02244 ATPase-like protein 99.2 4.7E-10 1E-14 124.2 18.3 124 392-526 120-263 (383)
161 PRK05022 anaerobic nitric oxid 99.2 1.1E-10 2.3E-15 135.3 13.9 186 356-567 185-421 (509)
162 TIGR02974 phageshock_pspF psp 99.2 1.9E-10 4.2E-15 126.4 14.2 181 360-566 1-233 (329)
163 PRK10865 protein disaggregatio 99.2 2.2E-10 4.7E-15 140.0 16.0 166 357-538 567-780 (857)
164 PRK11608 pspF phage shock prot 99.2 2E-10 4.4E-15 126.0 14.2 185 356-566 4-240 (326)
165 KOG0991 Replication factor C, 99.2 1.6E-10 3.5E-15 119.4 12.4 208 345-584 14-235 (333)
166 TIGR03345 VI_ClpV1 type VI sec 99.2 2E-10 4.3E-15 140.1 15.5 162 358-538 566-781 (852)
167 PRK10820 DNA-binding transcrip 99.2 2.8E-10 6E-15 132.3 15.6 196 355-579 201-447 (520)
168 PRK11388 DNA-binding transcrip 99.2 3.3E-10 7.1E-15 134.5 16.4 199 355-582 322-567 (638)
169 TIGR00764 lon_rel lon-related 99.2 7.9E-10 1.7E-14 130.5 19.5 93 492-586 268-391 (608)
170 TIGR00368 Mg chelatase-related 99.2 4.7E-10 1E-14 129.5 17.0 201 355-584 189-497 (499)
171 COG1221 PspF Transcriptional r 99.2 6.9E-11 1.5E-15 131.9 9.8 188 354-567 74-310 (403)
172 CHL00095 clpC Clp protease ATP 99.2 2.9E-10 6.3E-15 138.6 16.0 131 358-502 509-662 (821)
173 TIGR00678 holB DNA polymerase 99.2 5.9E-10 1.3E-14 112.2 15.4 129 388-536 11-167 (188)
174 COG0470 HolB ATPase involved i 99.2 1.1E-09 2.3E-14 117.9 18.4 150 358-534 1-178 (325)
175 smart00350 MCM minichromosome 99.2 5.4E-10 1.2E-14 129.5 16.6 162 359-537 204-400 (509)
176 PRK15429 formate hydrogenlyase 99.1 5E-10 1.1E-14 134.1 16.6 186 355-566 373-609 (686)
177 TIGR03346 chaperone_ClpB ATP-d 99.1 4.1E-10 8.8E-15 137.8 16.0 167 357-538 564-777 (852)
178 PF05621 TniB: Bacterial TniB 99.1 1.1E-09 2.5E-14 118.0 16.7 208 360-581 36-284 (302)
179 PRK11331 5-methylcytosine-spec 99.1 1.7E-09 3.7E-14 122.4 17.9 141 357-523 174-357 (459)
180 TIGR02031 BchD-ChlD magnesium 99.1 1.3E-09 2.8E-14 128.3 17.6 181 393-587 18-259 (589)
181 KOG1969 DNA replication checkp 99.1 2.3E-09 5.1E-14 124.7 19.1 211 345-570 258-519 (877)
182 PF07728 AAA_5: AAA domain (dy 99.1 1.5E-10 3.2E-15 110.5 7.8 110 393-515 1-139 (139)
183 PRK08058 DNA polymerase III su 99.1 6E-10 1.3E-14 122.4 13.5 149 356-535 3-180 (329)
184 PF01078 Mg_chelatase: Magnesi 99.1 1.5E-10 3.2E-15 119.1 7.8 119 356-501 1-158 (206)
185 TIGR00602 rad24 checkpoint pro 99.1 1.6E-09 3.4E-14 127.9 17.3 255 346-618 72-390 (637)
186 PF00158 Sigma54_activat: Sigm 99.1 2.6E-10 5.7E-15 114.0 9.0 130 360-515 1-154 (168)
187 PRK07399 DNA polymerase III su 99.1 6.2E-10 1.4E-14 121.7 12.5 155 356-537 2-195 (314)
188 COG0542 clpA ATP-binding subun 99.1 7.6E-10 1.7E-14 131.6 13.8 163 358-538 491-706 (786)
189 COG2607 Predicted ATPase (AAA+ 99.1 8E-09 1.7E-13 107.6 19.3 168 350-543 52-245 (287)
190 TIGR03015 pepcterm_ATPase puta 99.0 9.6E-09 2.1E-13 108.2 19.2 182 393-586 45-266 (269)
191 PRK05707 DNA polymerase III su 99.0 2.3E-09 5.1E-14 117.9 13.5 132 388-537 19-178 (328)
192 COG1219 ClpX ATP-dependent pro 99.0 1.1E-09 2.5E-14 117.5 9.3 131 357-487 59-203 (408)
193 PRK04132 replication factor C 99.0 8.9E-09 1.9E-13 124.6 17.8 166 394-582 567-750 (846)
194 PRK08116 hypothetical protein; 99.0 3.7E-09 8E-14 113.2 12.6 123 391-526 114-251 (268)
195 PF06068 TIP49: TIP49 C-termin 99.0 1.8E-08 3.9E-13 111.1 18.0 65 356-427 22-88 (398)
196 TIGR02915 PEP_resp_reg putativ 98.9 5.5E-09 1.2E-13 118.3 12.9 195 356-579 137-382 (445)
197 PF13177 DNA_pol3_delta2: DNA 98.9 4.9E-09 1.1E-13 104.1 11.0 133 362-523 1-160 (162)
198 smart00763 AAA_PrkA PrkA AAA d 98.9 1.5E-08 3.2E-13 112.2 15.6 84 356-446 48-144 (361)
199 KOG0741 AAA+-type ATPase [Post 98.9 5.9E-09 1.3E-13 117.7 12.4 155 373-535 526-684 (744)
200 KOG1942 DNA helicase, TBP-inte 98.9 4.9E-08 1.1E-12 104.0 18.1 64 357-427 37-102 (456)
201 PRK09862 putative ATP-dependen 98.9 2.9E-08 6.3E-13 114.7 17.5 143 355-526 188-390 (506)
202 PRK06964 DNA polymerase III su 98.9 1E-08 2.2E-13 113.3 13.1 135 387-536 17-203 (342)
203 COG1239 ChlI Mg-chelatase subu 98.9 2E-08 4.4E-13 111.9 15.3 160 355-539 14-234 (423)
204 KOG0990 Replication factor C, 98.9 2.3E-08 4.9E-13 107.9 13.7 188 345-562 28-233 (360)
205 PF07724 AAA_2: AAA domain (Cd 98.9 6.5E-09 1.4E-13 104.3 8.9 110 392-503 4-131 (171)
206 PRK10923 glnG nitrogen regulat 98.9 3.3E-08 7.1E-13 112.9 15.3 197 356-581 136-383 (469)
207 PRK06871 DNA polymerase III su 98.8 4.2E-08 9E-13 107.9 15.2 135 387-536 20-178 (325)
208 PRK11361 acetoacetate metaboli 98.8 4.4E-08 9.6E-13 111.1 15.8 196 356-580 141-387 (457)
209 COG0606 Predicted ATPase with 98.8 1.1E-08 2.4E-13 115.4 9.5 47 354-414 175-221 (490)
210 PRK08769 DNA polymerase III su 98.8 5.8E-08 1.3E-12 106.5 14.4 134 387-535 22-183 (319)
211 PTZ00111 DNA replication licen 98.8 8.8E-08 1.9E-12 115.9 16.8 160 358-535 450-655 (915)
212 PRK07993 DNA polymerase III su 98.8 7.4E-08 1.6E-12 106.4 14.4 131 387-535 20-178 (334)
213 PRK06090 DNA polymerase III su 98.8 1.2E-07 2.7E-12 103.9 15.2 131 387-535 21-178 (319)
214 PRK13765 ATP-dependent proteas 98.7 1.6E-07 3.4E-12 111.4 16.5 92 492-585 277-399 (637)
215 COG1220 HslU ATP-dependent pro 98.7 7.8E-08 1.7E-12 104.3 12.6 81 452-534 252-346 (444)
216 PRK15115 response regulator Gl 98.7 1.5E-07 3.3E-12 106.6 15.8 191 359-581 135-379 (444)
217 PRK12377 putative replication 98.7 7.1E-08 1.5E-12 102.4 12.1 100 392-502 102-206 (248)
218 PF14532 Sigma54_activ_2: Sigm 98.7 2E-08 4.3E-13 96.6 6.6 105 361-500 1-108 (138)
219 KOG0745 Putative ATP-dependent 98.7 5.7E-08 1.2E-12 108.0 10.2 95 393-487 228-332 (564)
220 KOG1514 Origin recognition com 98.7 5E-07 1.1E-11 105.5 17.5 186 393-587 424-656 (767)
221 TIGR01818 ntrC nitrogen regula 98.7 1.3E-07 2.8E-12 107.6 12.6 198 357-583 133-381 (463)
222 PRK07952 DNA replication prote 98.7 1.3E-07 2.8E-12 100.1 11.2 131 354-502 68-205 (244)
223 PF07726 AAA_3: ATPase family 98.6 1.2E-08 2.6E-13 97.8 2.5 111 393-515 1-129 (131)
224 PRK10365 transcriptional regul 98.6 1.7E-07 3.6E-12 105.9 11.7 194 359-581 140-384 (441)
225 PRK08939 primosomal protein Dn 98.6 1.6E-07 3.5E-12 102.5 10.9 101 355-462 124-229 (306)
226 PRK08181 transposase; Validate 98.6 2.5E-07 5.4E-12 99.3 11.8 99 392-502 107-209 (269)
227 PRK08699 DNA polymerase III su 98.6 3E-07 6.6E-12 101.2 12.0 133 388-535 18-183 (325)
228 COG3283 TyrR Transcriptional r 98.6 3.3E-07 7.1E-12 100.1 11.5 201 353-579 199-442 (511)
229 PRK06835 DNA replication prote 98.5 3.3E-07 7.2E-12 101.0 10.8 70 392-463 184-259 (329)
230 PRK06526 transposase; Provisio 98.5 2.6E-07 5.6E-12 98.4 8.8 100 391-502 98-201 (254)
231 PF13173 AAA_14: AAA domain 98.5 7E-07 1.5E-11 84.7 10.6 69 392-462 3-73 (128)
232 PF03215 Rad17: Rad17 cell cyc 98.5 3.6E-06 7.9E-11 98.0 17.6 205 346-567 7-269 (519)
233 KOG2035 Replication factor C, 98.5 2.2E-06 4.7E-11 91.3 14.2 167 350-543 5-205 (351)
234 PRK09183 transposase/IS protei 98.5 6E-07 1.3E-11 95.8 9.6 72 392-464 103-178 (259)
235 PRK13406 bchD magnesium chelat 98.4 2.2E-06 4.7E-11 101.1 14.8 181 392-588 26-252 (584)
236 KOG2680 DNA helicase TIP49, TB 98.4 6E-06 1.3E-10 88.7 16.2 82 502-586 339-429 (454)
237 KOG1051 Chaperone HSP104 and r 98.4 1.5E-06 3.2E-11 105.3 12.8 127 358-501 562-710 (898)
238 COG3284 AcoR Transcriptional a 98.4 4.3E-07 9.3E-12 105.5 7.3 172 393-583 338-554 (606)
239 COG1484 DnaC DNA replication p 98.4 1.9E-06 4.2E-11 91.7 11.3 71 391-463 105-180 (254)
240 PF13401 AAA_22: AAA domain; P 98.4 1.1E-06 2.4E-11 82.2 8.3 98 392-500 5-126 (131)
241 PF12775 AAA_7: P-loop contain 98.4 4.1E-06 9E-11 90.1 13.7 202 392-609 34-272 (272)
242 PF01695 IstB_IS21: IstB-like 98.4 4.7E-07 1E-11 91.4 6.0 70 391-462 47-120 (178)
243 PRK06921 hypothetical protein; 98.4 2.5E-06 5.4E-11 91.5 11.3 68 391-461 117-188 (266)
244 KOG2227 Pre-initiation complex 98.3 1.4E-05 3.1E-10 90.3 17.3 179 358-553 150-356 (529)
245 PRK05917 DNA polymerase III su 98.3 5.8E-06 1.3E-10 89.6 13.1 123 387-524 15-154 (290)
246 PF01637 Arch_ATPase: Archaeal 98.3 3.3E-06 7.1E-11 85.6 10.5 160 361-540 2-207 (234)
247 cd01120 RecA-like_NTPases RecA 98.3 2.3E-06 5.1E-11 81.6 8.8 71 394-464 2-99 (165)
248 PLN03210 Resistant to P. syrin 98.3 1.2E-05 2.5E-10 102.2 17.4 175 355-559 181-385 (1153)
249 PF05729 NACHT: NACHT domain 98.3 9.6E-06 2.1E-10 78.1 11.9 141 393-539 2-165 (166)
250 PF00493 MCM: MCM2/3/5 family 98.2 9.8E-07 2.1E-11 97.4 5.5 161 359-537 25-221 (331)
251 COG1241 MCM2 Predicted ATPase 98.2 4.6E-06 1E-10 99.1 11.3 160 357-534 285-480 (682)
252 KOG0478 DNA replication licens 98.1 3.1E-05 6.6E-10 90.6 14.4 129 392-532 463-621 (804)
253 PRK07276 DNA polymerase III su 98.1 3.7E-05 8E-10 83.6 13.5 130 387-534 20-172 (290)
254 KOG0480 DNA replication licens 98.1 3.1E-05 6.7E-10 90.0 13.0 166 356-538 343-543 (764)
255 PF12774 AAA_6: Hydrolytic ATP 98.1 0.00015 3.2E-09 76.5 17.0 153 392-563 33-200 (231)
256 PRK07132 DNA polymerase III su 98.1 9.7E-05 2.1E-09 80.7 16.1 126 388-535 15-160 (299)
257 KOG1970 Checkpoint RAD17-RFC c 98.0 0.00017 3.8E-09 83.0 17.6 207 346-566 70-320 (634)
258 TIGR02237 recomb_radB DNA repa 98.0 2.7E-05 5.8E-10 79.5 10.1 110 391-500 12-148 (209)
259 PF00931 NB-ARC: NB-ARC domain 98.0 5E-05 1.1E-09 80.6 12.3 148 369-541 4-174 (287)
260 PF03969 AFG1_ATPase: AFG1-lik 98.0 3.9E-05 8.5E-10 85.8 10.8 139 388-550 59-206 (362)
261 cd01124 KaiC KaiC is a circadi 97.9 7.6E-05 1.7E-09 74.2 11.0 71 394-464 2-109 (187)
262 PRK05818 DNA polymerase III su 97.9 8.4E-05 1.8E-09 79.5 11.4 121 389-524 5-147 (261)
263 PRK11823 DNA repair protein Ra 97.8 9.3E-05 2E-09 85.0 10.8 75 390-464 79-170 (446)
264 PF00910 RNA_helicase: RNA hel 97.8 5.9E-05 1.3E-09 69.8 7.3 23 394-416 1-23 (107)
265 cd01121 Sms Sms (bacterial rad 97.8 0.00012 2.5E-09 82.4 10.3 75 390-464 81-172 (372)
266 KOG0482 DNA replication licens 97.7 0.00016 3.5E-09 82.3 10.3 163 359-535 343-537 (721)
267 COG1618 Predicted nucleotide k 97.7 0.00032 7E-09 70.0 10.8 26 390-415 4-29 (179)
268 PHA00729 NTP-binding motif con 97.7 8.6E-05 1.9E-09 78.0 6.9 24 393-416 19-42 (226)
269 PRK09361 radB DNA repair and r 97.6 0.00024 5.2E-09 73.5 9.6 38 388-425 20-60 (225)
270 KOG1051 Chaperone HSP104 and r 97.6 0.00048 1E-08 84.2 13.3 161 356-537 184-363 (898)
271 cd01394 radB RadB. The archaea 97.6 0.00043 9.4E-09 71.2 11.2 35 391-425 19-56 (218)
272 TIGR02012 tigrfam_recA protein 97.6 0.00037 8E-09 76.9 11.1 109 392-500 56-190 (321)
273 PRK08533 flagellar accessory p 97.6 0.00067 1.5E-08 71.3 12.1 75 389-463 22-130 (230)
274 PRK06067 flagellar accessory p 97.6 0.00056 1.2E-08 71.4 11.5 40 387-426 21-63 (234)
275 PRK00131 aroK shikimate kinase 97.6 0.00024 5.2E-09 69.5 8.0 33 390-422 3-35 (175)
276 PF13207 AAA_17: AAA domain; P 97.6 7E-05 1.5E-09 69.4 4.0 31 394-424 2-32 (121)
277 PF05707 Zot: Zonular occluden 97.5 0.00012 2.5E-09 74.7 5.9 124 394-525 3-147 (193)
278 COG1373 Predicted ATPase (AAA+ 97.5 0.0032 6.8E-08 71.6 18.0 135 393-543 39-186 (398)
279 TIGR01618 phage_P_loop phage n 97.5 0.00022 4.8E-09 74.7 7.8 73 389-463 10-94 (220)
280 PRK08118 topology modulation p 97.5 0.00018 4E-09 71.8 6.6 33 393-425 3-35 (167)
281 PRK15455 PrkA family serine pr 97.5 0.00016 3.6E-09 84.5 7.0 63 356-424 74-137 (644)
282 TIGR02858 spore_III_AA stage I 97.5 0.00024 5.2E-09 76.6 7.3 113 392-522 112-256 (270)
283 KOG2543 Origin recognition com 97.5 0.0019 4.2E-08 71.9 14.3 158 359-536 7-192 (438)
284 COG3267 ExeA Type II secretory 97.4 0.0037 7.9E-08 66.7 15.3 177 393-580 53-267 (269)
285 PRK07261 topology modulation p 97.4 0.00031 6.6E-09 70.4 6.9 31 394-424 3-33 (171)
286 PRK14722 flhF flagellar biosyn 97.4 0.00058 1.3E-08 76.8 9.7 108 391-509 137-266 (374)
287 TIGR00416 sms DNA repair prote 97.4 0.00078 1.7E-08 77.7 11.1 74 391-464 94-184 (454)
288 KOG2383 Predicted ATPase [Gene 97.4 0.0015 3.3E-08 73.1 12.6 141 388-553 111-275 (467)
289 cd00046 DEXDc DEAD-like helica 97.4 0.0011 2.4E-08 60.5 9.8 24 392-415 1-24 (144)
290 COG1485 Predicted ATPase [Gene 97.4 0.00042 9.1E-09 76.5 8.0 138 388-549 62-208 (367)
291 cd00983 recA RecA is a bacter 97.4 0.00085 1.8E-08 74.2 10.4 109 392-500 56-190 (325)
292 cd03283 ABC_MutS-like MutS-lik 97.4 0.0008 1.7E-08 69.2 9.4 104 392-505 26-151 (199)
293 KOG0477 DNA replication licens 97.3 0.001 2.2E-08 77.6 10.5 31 392-422 483-513 (854)
294 cd01393 recA_like RecA is a b 97.3 0.0009 1.9E-08 69.0 9.3 112 388-499 16-166 (226)
295 PF13671 AAA_33: AAA domain; P 97.3 0.00056 1.2E-08 65.0 7.3 34 394-429 2-35 (143)
296 PF13604 AAA_30: AAA domain; P 97.3 0.00091 2E-08 68.5 9.0 96 393-500 20-131 (196)
297 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00081 1.8E-08 69.7 8.8 113 388-500 16-168 (235)
298 PF06745 KaiC: KaiC; InterPro 97.3 0.0014 3E-08 68.0 10.3 76 387-462 15-127 (226)
299 cd00984 DnaB_C DnaB helicase C 97.3 0.002 4.3E-08 67.1 11.6 40 387-426 9-52 (242)
300 PRK14974 cell division protein 97.3 0.0024 5.3E-08 71.0 12.7 73 390-462 139-234 (336)
301 COG5271 MDN1 AAA ATPase contai 97.3 0.00078 1.7E-08 84.6 9.4 137 391-539 1543-1705(4600)
302 PRK04296 thymidine kinase; Pro 97.3 0.0012 2.6E-08 67.3 9.4 70 393-462 4-90 (190)
303 KOG1968 Replication factor C, 97.3 0.0012 2.5E-08 81.2 10.8 203 349-565 311-535 (871)
304 PF13191 AAA_16: AAA ATPase do 97.3 0.00026 5.6E-09 69.8 4.3 59 360-427 2-63 (185)
305 COG1116 TauB ABC-type nitrate/ 97.3 0.00045 9.8E-09 73.2 6.3 22 393-414 31-52 (248)
306 PRK12723 flagellar biosynthesi 97.3 0.0018 3.8E-08 73.4 11.3 110 390-509 173-306 (388)
307 PHA02624 large T antigen; Prov 97.2 0.002 4.3E-08 76.0 11.3 122 387-523 427-561 (647)
308 PRK06762 hypothetical protein; 97.2 0.0011 2.4E-08 65.1 8.0 39 391-429 2-40 (166)
309 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0027 5.8E-08 66.8 11.1 40 387-426 17-59 (237)
310 PF00437 T2SE: Type II/IV secr 97.2 0.00048 1E-08 73.3 5.5 99 353-461 99-208 (270)
311 cd01131 PilT Pilus retraction 97.2 0.0017 3.6E-08 66.6 9.2 67 393-459 3-83 (198)
312 PRK10536 hypothetical protein; 97.2 0.0018 4E-08 69.4 9.7 45 356-414 53-97 (262)
313 PF03266 NTPase_1: NTPase; In 97.1 0.00039 8.4E-09 69.8 4.2 27 393-419 1-30 (168)
314 KOG2170 ATPase of the AAA+ sup 97.1 0.015 3.2E-07 63.5 16.2 97 359-464 83-192 (344)
315 KOG0481 DNA replication licens 97.1 0.0024 5.2E-08 73.2 10.7 130 392-529 365-519 (729)
316 COG4650 RtcR Sigma54-dependent 97.1 0.0011 2.4E-08 71.5 7.6 75 390-464 207-296 (531)
317 PRK05973 replicative DNA helic 97.1 0.0028 6.1E-08 67.2 10.7 37 390-426 63-102 (237)
318 PF05272 VirE: Virulence-assoc 97.1 0.0027 5.9E-08 65.5 10.3 124 367-522 34-168 (198)
319 PF06309 Torsin: Torsin; Inte 97.1 0.0026 5.6E-08 61.3 9.4 52 358-415 25-77 (127)
320 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0025 5.5E-08 67.3 10.1 35 394-428 2-39 (249)
321 TIGR02688 conserved hypothetic 97.1 0.0017 3.6E-08 74.0 9.1 107 365-500 194-313 (449)
322 cd01122 GP4d_helicase GP4d_hel 97.1 0.0027 5.9E-08 67.4 10.3 39 387-425 26-68 (271)
323 cd00464 SK Shikimate kinase (S 97.1 0.00085 1.8E-08 64.6 5.8 39 393-433 1-39 (154)
324 TIGR02782 TrbB_P P-type conjug 97.1 0.00059 1.3E-08 74.6 5.2 69 392-460 133-214 (299)
325 cd00227 CPT Chloramphenicol (C 97.1 0.0011 2.3E-08 66.3 6.6 37 392-428 3-39 (175)
326 PRK13947 shikimate kinase; Pro 97.1 0.00053 1.2E-08 67.6 4.4 31 393-423 3-33 (171)
327 PRK09376 rho transcription ter 97.0 0.003 6.4E-08 71.4 10.3 23 394-416 172-194 (416)
328 PRK09354 recA recombinase A; P 97.0 0.0026 5.6E-08 71.0 9.8 108 392-499 61-194 (349)
329 PRK04040 adenylate kinase; Pro 97.0 0.013 2.8E-07 59.9 13.9 31 391-421 2-34 (188)
330 KOG2228 Origin recognition com 97.0 0.006 1.3E-07 67.3 11.9 158 360-537 26-219 (408)
331 PRK03839 putative kinase; Prov 97.0 0.00059 1.3E-08 68.2 4.0 31 393-423 2-32 (180)
332 PF07693 KAP_NTPase: KAP famil 97.0 0.011 2.3E-07 64.3 14.0 79 450-539 172-265 (325)
333 PRK05800 cobU adenosylcobinami 97.0 0.0031 6.7E-08 63.5 9.0 34 393-426 3-36 (170)
334 cd02020 CMPK Cytidine monophos 97.0 0.0022 4.7E-08 61.1 7.5 30 394-423 2-31 (147)
335 PRK06581 DNA polymerase III su 97.0 0.011 2.3E-07 63.1 13.1 139 388-541 12-165 (263)
336 COG3854 SpoIIIAA ncharacterize 97.0 0.0045 9.8E-08 65.2 10.2 70 393-462 139-230 (308)
337 cd01130 VirB11-like_ATPase Typ 97.0 0.00092 2E-08 67.6 5.1 69 392-460 26-110 (186)
338 PRK12339 2-phosphoglycerate ki 97.0 0.0087 1.9E-07 61.7 12.2 30 391-420 3-32 (197)
339 cd01128 rho_factor Transcripti 97.0 0.0049 1.1E-07 65.8 10.6 25 393-417 18-42 (249)
340 PF00448 SRP54: SRP54-type pro 96.9 0.0048 1E-07 63.5 10.0 108 391-506 1-131 (196)
341 PRK00771 signal recognition pa 96.9 0.0087 1.9E-07 68.8 13.0 39 389-427 93-134 (437)
342 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00081 1.7E-08 67.0 4.1 34 394-429 2-35 (183)
343 PRK00625 shikimate kinase; Pro 96.9 0.0009 1.9E-08 67.6 4.4 31 393-423 2-32 (173)
344 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0058 1.3E-07 65.4 10.7 39 387-425 32-73 (259)
345 PRK13695 putative NTPase; Prov 96.9 0.0066 1.4E-07 60.5 10.3 23 393-415 2-24 (174)
346 PRK11889 flhF flagellar biosyn 96.9 0.013 2.8E-07 66.6 13.6 103 390-500 240-362 (436)
347 PF14516 AAA_35: AAA-like doma 96.9 0.012 2.7E-07 65.1 13.4 139 393-537 33-214 (331)
348 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0068 1.5E-07 63.0 10.6 23 391-413 29-51 (213)
349 PRK13948 shikimate kinase; Pro 96.9 0.0021 4.5E-08 65.5 6.6 43 389-433 8-50 (182)
350 PRK13900 type IV secretion sys 96.9 0.0023 5.1E-08 71.0 7.4 69 392-460 161-245 (332)
351 PRK13946 shikimate kinase; Pro 96.9 0.003 6.5E-08 63.8 7.6 34 390-423 9-42 (184)
352 cd03238 ABC_UvrA The excision 96.9 0.005 1.1E-07 62.4 9.2 24 392-415 22-45 (176)
353 PLN02200 adenylate kinase fami 96.8 0.0015 3.2E-08 69.0 5.6 41 387-429 39-79 (234)
354 PRK14532 adenylate kinase; Pro 96.8 0.0011 2.3E-08 66.8 4.2 36 393-430 2-37 (188)
355 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0087 1.9E-07 62.0 11.1 38 387-424 16-56 (229)
356 cd01125 repA Hexameric Replica 96.8 0.0072 1.6E-07 63.4 10.5 21 394-414 4-24 (239)
357 COG4088 Predicted nucleotide k 96.8 0.0035 7.6E-08 65.0 7.8 23 393-415 3-25 (261)
358 PRK13949 shikimate kinase; Pro 96.8 0.0011 2.4E-08 66.4 4.1 31 393-423 3-33 (169)
359 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0099 2.1E-07 61.6 11.3 39 388-426 13-54 (224)
360 TIGR01420 pilT_fam pilus retra 96.8 0.0029 6.2E-08 70.4 7.7 69 392-460 123-205 (343)
361 cd02027 APSK Adenosine 5'-phos 96.8 0.0042 9.1E-08 60.8 7.9 35 394-428 2-39 (149)
362 PRK14531 adenylate kinase; Pro 96.8 0.0014 3E-08 66.2 4.6 35 392-428 3-37 (183)
363 PRK06217 hypothetical protein; 96.8 0.0012 2.7E-08 66.4 4.3 31 393-423 3-33 (183)
364 PF13481 AAA_25: AAA domain; P 96.8 0.0051 1.1E-07 61.6 8.6 73 393-465 34-156 (193)
365 cd03216 ABC_Carb_Monos_I This 96.8 0.0082 1.8E-07 59.5 10.0 103 391-503 26-143 (163)
366 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0054 1.2E-07 62.2 8.5 69 392-461 26-100 (177)
367 cd01428 ADK Adenylate kinase ( 96.8 0.0013 2.8E-08 65.9 4.0 33 394-428 2-34 (194)
368 cd02021 GntK Gluconate kinase 96.7 0.0013 2.9E-08 63.4 3.9 33 394-428 2-34 (150)
369 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0048 1.1E-07 66.3 8.5 94 355-461 57-160 (264)
370 PRK13833 conjugal transfer pro 96.7 0.0022 4.7E-08 71.0 5.9 69 392-460 145-225 (323)
371 cd00544 CobU Adenosylcobinamid 96.7 0.0055 1.2E-07 61.7 8.4 70 394-465 2-88 (169)
372 KOG3347 Predicted nucleotide k 96.7 0.0013 2.8E-08 65.0 3.5 31 393-423 9-39 (176)
373 PRK08233 hypothetical protein; 96.7 0.0067 1.4E-07 60.0 8.7 34 392-425 4-38 (182)
374 TIGR02788 VirB11 P-type DNA tr 96.7 0.0035 7.5E-08 68.7 7.0 70 391-460 144-228 (308)
375 COG0703 AroK Shikimate kinase 96.7 0.0046 1E-07 62.5 7.3 31 392-422 3-33 (172)
376 PRK13894 conjugal transfer ATP 96.7 0.0024 5.2E-08 70.5 5.7 69 392-460 149-229 (319)
377 PRK12724 flagellar biosynthesi 96.7 0.019 4.1E-07 65.7 12.9 112 390-509 222-353 (432)
378 PRK04328 hypothetical protein; 96.7 0.013 2.9E-07 62.2 11.1 39 387-425 19-60 (249)
379 PF09848 DUF2075: Uncharacteri 96.7 0.0064 1.4E-07 67.7 9.0 23 393-415 3-25 (352)
380 TIGR01313 therm_gnt_kin carboh 96.6 0.0015 3.3E-08 64.0 3.6 32 394-427 1-32 (163)
381 cd03115 SRP The signal recogni 96.6 0.021 4.6E-07 56.6 11.7 35 393-427 2-39 (173)
382 cd03247 ABCC_cytochrome_bd The 96.6 0.012 2.7E-07 58.7 10.1 26 390-415 27-52 (178)
383 smart00534 MUTSac ATPase domai 96.6 0.011 2.3E-07 59.9 9.6 19 394-412 2-20 (185)
384 PRK14530 adenylate kinase; Pro 96.6 0.002 4.2E-08 66.6 4.4 30 393-422 5-34 (215)
385 PHA02774 E1; Provisional 96.6 0.0084 1.8E-07 70.6 9.9 33 392-424 435-468 (613)
386 PRK04301 radA DNA repair and r 96.6 0.0082 1.8E-07 65.9 9.3 113 388-500 99-251 (317)
387 PRK08154 anaerobic benzoate ca 96.6 0.0057 1.2E-07 67.1 8.1 33 389-421 131-163 (309)
388 PRK06547 hypothetical protein; 96.6 0.0022 4.9E-08 64.6 4.5 34 389-422 13-46 (172)
389 COG0563 Adk Adenylate kinase a 96.6 0.0025 5.4E-08 64.7 4.8 33 393-427 2-34 (178)
390 PRK13851 type IV secretion sys 96.6 0.0036 7.8E-08 69.9 6.4 70 391-460 162-246 (344)
391 PTZ00088 adenylate kinase 1; P 96.6 0.0025 5.4E-08 67.2 4.8 33 390-422 5-37 (229)
392 PRK03731 aroL shikimate kinase 96.6 0.0024 5.2E-08 63.1 4.5 31 392-422 3-33 (171)
393 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0051 1.1E-07 68.5 7.4 83 356-445 58-143 (358)
394 TIGR02236 recomb_radA DNA repa 96.6 0.009 2E-07 65.2 9.3 39 388-426 92-139 (310)
395 COG2874 FlaH Predicted ATPases 96.6 0.018 3.9E-07 60.1 10.8 121 383-511 18-176 (235)
396 PHA02530 pseT polynucleotide k 96.6 0.0065 1.4E-07 65.5 8.0 39 391-430 2-40 (300)
397 PLN02674 adenylate kinase 96.6 0.0043 9.2E-08 66.1 6.5 37 390-428 30-66 (244)
398 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0058 1.2E-07 59.7 6.9 103 392-505 26-143 (157)
399 PRK13764 ATPase; Provisional 96.5 0.0036 7.8E-08 74.3 6.4 70 391-461 257-335 (602)
400 PF01745 IPT: Isopentenyl tran 96.5 0.004 8.7E-08 65.0 5.9 134 393-539 3-141 (233)
401 PRK06696 uridine kinase; Valid 96.5 0.0055 1.2E-07 63.8 7.0 39 390-428 21-62 (223)
402 PRK10867 signal recognition pa 96.5 0.036 7.7E-07 63.8 14.1 75 388-462 97-195 (433)
403 PRK05057 aroK shikimate kinase 96.5 0.0028 6.1E-08 63.6 4.5 34 391-424 4-37 (172)
404 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0027 5.9E-08 63.1 4.2 29 393-421 5-33 (188)
405 TIGR02655 circ_KaiC circadian 96.5 0.013 2.7E-07 68.3 10.2 74 390-463 262-366 (484)
406 TIGR03499 FlhF flagellar biosy 96.5 0.012 2.6E-07 63.8 9.4 38 390-427 193-235 (282)
407 PRK10416 signal recognition pa 96.4 0.034 7.5E-07 61.5 13.0 37 389-425 112-151 (318)
408 PRK14528 adenylate kinase; Pro 96.4 0.0029 6.4E-08 64.2 4.3 30 393-422 3-32 (186)
409 TIGR00064 ftsY signal recognit 96.4 0.028 6E-07 60.8 11.8 38 389-426 70-110 (272)
410 PRK02496 adk adenylate kinase; 96.4 0.0028 6.2E-08 63.5 3.9 30 393-422 3-32 (184)
411 TIGR02525 plasmid_TraJ plasmid 96.4 0.0057 1.2E-07 69.0 6.7 68 393-460 151-235 (372)
412 cd03227 ABC_Class2 ABC-type Cl 96.4 0.0084 1.8E-07 59.3 7.2 22 392-413 22-43 (162)
413 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.016 3.4E-07 56.4 8.9 69 391-461 26-99 (144)
414 smart00487 DEXDc DEAD-like hel 96.4 0.02 4.3E-07 55.6 9.6 33 392-424 25-62 (201)
415 TIGR02238 recomb_DMC1 meiotic 96.4 0.014 3E-07 64.4 9.5 108 391-498 96-242 (313)
416 PRK05541 adenylylsulfate kinas 96.4 0.0089 1.9E-07 59.5 7.3 37 390-426 6-45 (176)
417 cd03228 ABCC_MRP_Like The MRP 96.4 0.007 1.5E-07 60.2 6.5 25 391-415 28-52 (171)
418 PTZ00202 tuzin; Provisional 96.4 0.024 5.3E-07 65.0 11.4 62 356-426 260-321 (550)
419 cd02019 NK Nucleoside/nucleoti 96.4 0.0088 1.9E-07 51.1 6.2 30 394-423 2-32 (69)
420 TIGR02533 type_II_gspE general 96.4 0.011 2.4E-07 68.8 9.0 93 354-460 218-321 (486)
421 COG2805 PilT Tfp pilus assembl 96.4 0.015 3.3E-07 63.4 9.2 93 391-500 124-231 (353)
422 PF12780 AAA_8: P-loop contain 96.3 0.024 5.3E-07 61.2 10.8 91 359-461 9-100 (268)
423 COG1102 Cmk Cytidylate kinase 96.3 0.0031 6.7E-08 63.1 3.7 28 394-421 3-30 (179)
424 TIGR01351 adk adenylate kinase 96.3 0.0033 7.1E-08 64.7 4.0 28 394-421 2-29 (210)
425 TIGR02655 circ_KaiC circadian 96.3 0.025 5.3E-07 65.9 11.6 40 387-426 17-60 (484)
426 PRK14527 adenylate kinase; Pro 96.3 0.0034 7.3E-08 63.6 4.0 32 390-421 5-36 (191)
427 COG4619 ABC-type uncharacteriz 96.3 0.026 5.6E-07 57.3 9.9 25 391-415 29-53 (223)
428 PRK13808 adenylate kinase; Pro 96.3 0.016 3.5E-07 64.4 9.5 33 394-428 3-35 (333)
429 PRK09519 recA DNA recombinatio 96.3 0.022 4.8E-07 69.6 11.3 111 389-499 58-194 (790)
430 PF06414 Zeta_toxin: Zeta toxi 96.3 0.01 2.2E-07 60.6 7.4 42 389-430 13-55 (199)
431 TIGR01526 nadR_NMN_Atrans nico 96.3 0.0099 2.1E-07 65.8 7.7 37 392-428 163-199 (325)
432 cd03230 ABC_DR_subfamily_A Thi 96.3 0.014 3E-07 58.2 8.1 24 392-415 27-50 (173)
433 COG3842 PotA ABC-type spermidi 96.3 0.0069 1.5E-07 67.7 6.4 25 389-413 27-53 (352)
434 PRK00279 adk adenylate kinase; 96.3 0.0038 8.3E-08 64.5 4.1 28 394-421 3-30 (215)
435 PF13238 AAA_18: AAA domain; P 96.3 0.0033 7.1E-08 58.1 3.2 22 394-415 1-22 (129)
436 cd03246 ABCC_Protease_Secretio 96.3 0.033 7.2E-07 55.5 10.6 24 392-415 29-52 (173)
437 PRK05703 flhF flagellar biosyn 96.3 0.031 6.6E-07 64.2 11.6 37 391-427 221-262 (424)
438 TIGR01448 recD_rel helicase, p 96.2 0.014 2.9E-07 71.3 9.2 98 393-503 340-456 (720)
439 TIGR01425 SRP54_euk signal rec 96.2 0.057 1.2E-06 62.0 13.6 74 389-462 98-194 (429)
440 PLN03187 meiotic recombination 96.2 0.024 5.2E-07 63.3 10.2 107 392-498 127-272 (344)
441 COG2804 PulE Type II secretory 96.2 0.013 2.9E-07 67.7 8.2 95 354-462 234-339 (500)
442 cd03214 ABC_Iron-Siderophores_ 96.2 0.023 5E-07 57.0 9.1 24 392-415 26-49 (180)
443 PRK04182 cytidylate kinase; Pr 96.2 0.0048 1E-07 60.8 4.1 29 393-421 2-30 (180)
444 PRK01184 hypothetical protein; 96.2 0.0046 9.9E-08 62.0 4.0 29 393-422 3-31 (184)
445 COG5245 DYN1 Dynein, heavy cha 96.1 0.013 2.9E-07 73.8 8.2 142 390-539 1493-1660(3164)
446 PTZ00035 Rad51 protein; Provis 96.1 0.03 6.5E-07 62.4 10.5 109 390-498 117-264 (337)
447 PF13245 AAA_19: Part of AAA d 96.1 0.0084 1.8E-07 52.6 4.9 32 393-424 12-50 (76)
448 PF02562 PhoH: PhoH-like prote 96.1 0.0053 1.2E-07 63.8 4.3 23 393-415 21-43 (205)
449 PF08433 KTI12: Chromatin asso 96.1 0.027 5.8E-07 60.9 9.8 69 394-462 4-82 (270)
450 PRK00889 adenylylsulfate kinas 96.1 0.024 5.2E-07 56.4 8.8 37 391-427 4-43 (175)
451 COG4178 ABC-type uncharacteriz 96.1 0.017 3.8E-07 68.4 8.9 28 388-415 416-443 (604)
452 COG1136 SalX ABC-type antimicr 96.1 0.039 8.4E-07 58.3 10.6 21 393-413 33-53 (226)
453 cd03243 ABC_MutS_homologs The 96.1 0.025 5.4E-07 57.9 9.1 22 392-413 30-51 (202)
454 COG1936 Predicted nucleotide k 96.1 0.0041 9E-08 62.8 3.1 30 393-423 2-31 (180)
455 TIGR00152 dephospho-CoA kinase 96.1 0.025 5.5E-07 57.1 8.9 37 394-432 2-38 (188)
456 PRK04841 transcriptional regul 96.1 0.063 1.4E-06 66.3 14.0 32 392-424 33-64 (903)
457 TIGR02173 cyt_kin_arch cytidyl 96.1 0.0057 1.2E-07 59.9 4.1 28 394-421 3-30 (171)
458 PF04665 Pox_A32: Poxvirus A32 96.1 0.077 1.7E-06 56.6 12.7 133 390-537 12-170 (241)
459 COG1066 Sms Predicted ATP-depe 96.1 0.035 7.6E-07 62.9 10.5 147 387-537 88-256 (456)
460 cd03229 ABC_Class3 This class 96.1 0.015 3.3E-07 58.2 7.1 24 392-415 27-50 (178)
461 cd03280 ABC_MutS2 MutS2 homolo 96.1 0.039 8.4E-07 56.4 10.2 20 393-412 30-49 (200)
462 PF10236 DAP3: Mitochondrial r 96.1 0.3 6.5E-06 53.9 17.7 105 439-543 142-283 (309)
463 PF13521 AAA_28: AAA domain; P 96.0 0.0048 1E-07 60.7 3.3 27 394-421 2-28 (163)
464 PF13479 AAA_24: AAA domain 96.0 0.011 2.4E-07 61.3 6.1 68 391-462 3-80 (213)
465 PRK09302 circadian clock prote 96.0 0.036 7.7E-07 64.8 10.9 77 388-464 270-377 (509)
466 TIGR02239 recomb_RAD51 DNA rep 96.0 0.023 5E-07 62.7 8.9 110 389-498 94-242 (316)
467 COG1120 FepC ABC-type cobalami 96.0 0.031 6.8E-07 60.0 9.5 24 392-415 29-52 (258)
468 PRK09302 circadian clock prote 96.0 0.04 8.8E-07 64.4 11.3 40 388-427 28-71 (509)
469 PRK14737 gmk guanylate kinase; 96.0 0.012 2.5E-07 60.1 6.0 26 390-415 3-28 (186)
470 PF00406 ADK: Adenylate kinase 96.0 0.0046 1E-07 60.1 2.9 34 396-431 1-34 (151)
471 TIGR00959 ffh signal recogniti 96.0 0.096 2.1E-06 60.3 13.9 74 389-462 97-194 (428)
472 PRK08099 bifunctional DNA-bind 95.9 0.017 3.6E-07 65.8 7.4 32 390-421 218-249 (399)
473 PF13086 AAA_11: AAA domain; P 95.9 0.0058 1.3E-07 61.9 3.3 22 394-415 20-41 (236)
474 cd03223 ABCD_peroxisomal_ALDP 95.9 0.035 7.6E-07 55.1 8.8 25 391-415 27-51 (166)
475 TIGR02768 TraA_Ti Ti-type conj 95.9 0.018 3.9E-07 70.5 8.0 96 393-500 370-477 (744)
476 PLN03186 DNA repair protein RA 95.9 0.022 4.8E-07 63.6 8.0 109 391-499 123-270 (342)
477 TIGR02524 dot_icm_DotB Dot/Icm 95.9 0.038 8.2E-07 62.1 9.7 68 393-460 136-222 (358)
478 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.9 0.019 4E-07 58.7 6.7 33 393-425 40-79 (205)
479 TIGR00767 rho transcription te 95.9 0.021 4.6E-07 64.9 7.7 24 393-416 170-193 (415)
480 TIGR03819 heli_sec_ATPase heli 95.9 0.0095 2.1E-07 66.4 4.9 69 392-460 179-263 (340)
481 TIGR00150 HI0065_YjeE ATPase, 95.8 0.016 3.4E-07 56.4 5.8 27 392-418 23-49 (133)
482 COG5271 MDN1 AAA ATPase contai 95.8 0.02 4.3E-07 72.9 7.7 133 393-537 890-1047(4600)
483 cd03213 ABCG_EPDR ABCG transpo 95.8 0.038 8.3E-07 56.2 8.7 25 391-415 35-59 (194)
484 PRK12338 hypothetical protein; 95.8 0.1 2.2E-06 57.8 12.5 31 390-420 3-33 (319)
485 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.031 6.7E-07 56.0 7.7 23 393-415 4-26 (159)
486 PF05970 PIF1: PIF1-like helic 95.8 0.046 1E-06 61.4 10.0 26 390-415 21-46 (364)
487 PRK12727 flagellar biosynthesi 95.7 0.038 8.3E-07 64.8 9.5 25 391-415 350-374 (559)
488 PRK14526 adenylate kinase; Pro 95.7 0.0096 2.1E-07 62.0 4.1 33 393-427 2-34 (211)
489 PRK13539 cytochrome c biogenes 95.7 0.06 1.3E-06 55.2 9.8 24 392-415 29-52 (207)
490 PF08423 Rad51: Rad51; InterP 95.7 0.037 8.1E-07 59.3 8.5 111 396-506 43-192 (256)
491 PF03796 DnaB_C: DnaB-like hel 95.7 0.047 1E-06 58.0 9.1 38 388-425 16-57 (259)
492 COG1067 LonB Predicted ATP-dep 95.6 0.082 1.8E-06 63.6 11.9 219 349-586 95-399 (647)
493 cd03239 ABC_SMC_head The struc 95.6 0.057 1.2E-06 54.6 9.2 23 393-415 24-46 (178)
494 COG2074 2-phosphoglycerate kin 95.6 0.24 5.2E-06 53.2 13.8 183 387-588 85-283 (299)
495 PRK12726 flagellar biosynthesi 95.6 0.092 2E-06 59.6 11.4 61 364-427 181-245 (407)
496 PHA00012 I assembly protein 95.6 0.048 1E-06 60.4 8.8 111 394-510 4-136 (361)
497 PRK04132 replication factor C 95.6 0.0082 1.8E-07 73.8 3.3 51 345-407 6-56 (846)
498 PF01583 APS_kinase: Adenylyls 95.6 0.013 2.7E-07 58.6 4.1 39 391-429 2-43 (156)
499 TIGR00455 apsK adenylylsulfate 95.6 0.054 1.2E-06 54.4 8.7 40 389-428 16-58 (184)
500 cd03217 ABC_FeS_Assembly ABC-t 95.6 0.083 1.8E-06 54.0 10.2 25 390-414 25-49 (200)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-124 Score=1028.85 Aligned_cols=612 Identities=56% Similarity=0.831 Sum_probs=532.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhcccccccccccchHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCchhHHHhhcc
Q 003807 131 SKKIPLMVFLMGVWARLSRGIEKLMTWDWLSWWPFWRQEKRIEQLIAEANANPKDPAKQTALLSELNKQSPEAVIKRFEQ 210 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~q~~~~~~l~~~~p~~vi~~~e~ 210 (794)
..+-..|+.-+..|...+..++++ .|.|.+||+|-.+..++..+...+ .+ ++-..+...+...++++++
T Consensus 108 ~~~~~~vtl~~s~~~~~k~al~~~-e~s~~~~~~~~~~~~~~~~l~a~s-------~~---~~~~~~q~~~~~g~~~~~~ 176 (752)
T KOG0734|consen 108 NISSHWVTLHDSAQSFYKNALQNL-EWSLRVVSSFELQGAHVRALPASS-------SA---LLPFYIQALQRRGFKTLKS 176 (752)
T ss_pred hhccchhhhHHHHHHHHHHHHhhc-eeeeeeecccccCcchhhccccCC-------hh---hHHHHHHHHHhcccchhhh
Confidence 355667899999999999999999 799999999999988877766532 22 2222233444466667776
Q ss_pred CCcc-cCchhHHHHHHHHHhcccccccCCCCCCCCCCCchHHHHHHHHHhccCCCCCCCCCCCCCCCCceEEEeCCCCCc
Q 003807 211 RDHE-VDSRGVVEYLRALVATNAITEYLPDEQSGKPTTLPALLQELQHRASRNTNEPFLNPGVSEKQPLHVVMVDPKVSN 289 (794)
Q Consensus 211 ~~~~-~~~~~~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (794)
+... ..-.+...|++.....+. ..+.++.+.+.++ ++++.....|+ .+.+.+.+.|+|++++++..+.
T Consensus 177 ~~~~~~~~~~~a~~l~~~l~~~~-~~~~~~~~~~~ps-----~~e~~~~~~g~-----~n~~es~k~p~~~~~~e~~~s~ 245 (752)
T KOG0734|consen 177 REGVGRRTRSTAERLNESLANSP-SSLKGDLQVGAPS-----LVELLDKLEGT-----KNIPESHKDPFHVGFVEGFLSN 245 (752)
T ss_pred hhhhcccccccHHHHhHHHhcCc-hhcCCCccCCCch-----hHHHhhhhhcc-----CCcchhccCceeeeeecccccc
Confidence 5432 334557888888775543 2233333333332 44444444443 3455677899999999977666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccccccCCCC-CCCcccccCCHHHHH
Q 003807 290 KSRFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKN-VKTFKDVKGCDDAKQ 368 (794)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~-~~tFdDVvG~deaK~ 368 (794)
.+.+...++.++. +.+++++|++++..+....+.. +.+..+.+ ++.+++|+.. .++|+||.|+||+|+
T Consensus 246 ~~~~~~~~~k~i~-~~i~~~~~~~G~~~~~~~~~l~-~i~~~~~g---------l~~ev~p~~~~nv~F~dVkG~DEAK~ 314 (752)
T KOG0734|consen 246 RTTKAGRLVKTIR-TTIVGYLLLLGIYALLENTGLS-GIFRSTTG---------LDSEVDPEQMKNVTFEDVKGVDEAKQ 314 (752)
T ss_pred ccchHHHHHHHHH-HHHHHHHHHHHHHHHhhccccc-cccccccc---------cccccChhhhcccccccccChHHHHH
Confidence 6655666666666 4566778888887777665432 33322222 4456666544 578999999999999
Q ss_pred HHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHh
Q 003807 369 ELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKK 448 (794)
Q Consensus 369 eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~ 448 (794)
+|+|+|+||++|++|.++|+++|+||||+||||||||+||||+|+|+++|||++++++|.++|+|++++++|++|..|++
T Consensus 315 ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~ 394 (752)
T KOG0734|consen 315 ELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKA 394 (752)
T ss_pred HHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCccccccccccccc-chHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHH
Q 003807 449 KAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 527 (794)
Q Consensus 449 ~aP~ILfIDEIDaL~~~r~~~~~-~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~ 527 (794)
.+||||||||||++|++|.++.. +.++++||||.+||||.++.+||||+|||+|+.||+||+||||||++|.||.||.+
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVR 474 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcc
Confidence 99999999999999999987754 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhccccccccccch
Q 003807 528 GRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTMFISE 599 (794)
Q Consensus 528 eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g~~~k~~~ls~ 599 (794)
+|.+||+.|+.++.+..++|+..||| ||+|++|+||++|+.++...|+|.|+++|.||++||.+++++.+++
T Consensus 475 GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~ 554 (752)
T KOG0734|consen 475 GRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDE 554 (752)
T ss_pred cHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccccccCh
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecCCcccceeeccCCCcccccHHHHHHHHHHHhhHHHHHHHHhCCCCC
Q 003807 600 ESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHI 679 (794)
Q Consensus 600 eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg~alG~~~~~p~~d~~~~t~~~l~~~I~v~LgGraAEel~fG~~~~ 679 (794)
+.++++||||+||||||.++.++.|+||+||+|||.+||+|.++|++|++.+||.|++++++||||||+|||++||.|.+
T Consensus 555 eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~i 634 (752)
T KOG0734|consen 555 EAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKI 634 (752)
T ss_pred hhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHHHHHHHHHhhcchHHHHHhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003807 680 TTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD-----RPSSEMQSRIDAEVVKLLREAYDRVKALLKKHEKQLHALA 754 (794)
Q Consensus 680 tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~-----~~s~~~~~~id~ev~~~l~~~~~ra~~lL~~~r~~l~~la 754 (794)
||||+|||++||++|++||+.||||+++|++.+.. ..+..++..||.||+++|+++|+||+.||+.|.+++++||
T Consensus 635 TsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA 714 (752)
T KOG0734|consen 635 TSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALA 714 (752)
T ss_pred cccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998753 2456678889999999999999999999999999999999
Q ss_pred HHHHHhcccCHHHHHHhhccC
Q 003807 755 NALLEYETLSAEEIKRILLPY 775 (794)
Q Consensus 755 ~~Lle~etL~~~ei~~il~~~ 775 (794)
++||+||||+++||+++|...
T Consensus 715 ~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 715 EALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred HHHHHhhcCCHHHHHHHHhcc
Confidence 999999999999999999755
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-98 Score=849.77 Aligned_cols=473 Identities=54% Similarity=0.836 Sum_probs=435.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccCCHHHHHHHH
Q 003807 292 RFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELV 371 (794)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~tFdDVvG~deaK~eL~ 371 (794)
.|+..+..+++++++++++||+..+..+ ..+|.+..+++++. .+...+....++|.||.|++++|++|.
T Consensus 95 ~~~~~~~~~lp~il~~~~~~~~~~r~~~----~g~g~~~~~~gksk-------ak~~~~~~~~v~F~DVAG~dEakeel~ 163 (596)
T COG0465 95 LLASLLSTWLPFILLIGLGWFFFRRQAQ----GGGGGGAFSFGKSK-------AKLYLEDQVKVTFADVAGVDEAKEELS 163 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCcccCCChHH-------HHHhcccccCcChhhhcCcHHHHHHHH
Confidence 4555566777777778877777665422 11121133333332 233344567789999999999999999
Q ss_pred HHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCC
Q 003807 372 EVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAP 451 (794)
Q Consensus 372 eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP 451 (794)
++|++|++|.+|..+|+++|+|+||+||||||||+||||+|+|+++||+++|+|+|+++|+|+++.++|++|.+|++++|
T Consensus 164 EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP 243 (596)
T COG0465 164 ELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAP 243 (596)
T ss_pred HHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHH
Q 003807 452 CIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 527 (794)
Q Consensus 452 ~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~ 527 (794)
|||||||||+++..|+.. ..+.++++||||.+||||..+.+|+||++||+|+.+|+||+||||||++|.++.||..
T Consensus 244 ~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~ 323 (596)
T COG0465 244 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIK 323 (596)
T ss_pred CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchh
Confidence 999999999999999643 2345789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhccccccccccch
Q 003807 528 GRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTMFISE 599 (794)
Q Consensus 528 eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g~~~k~~~ls~ 599 (794)
+|.+|++.|++++++..++|+..+|+ ||+|++|+|++.|+++++..|++.|+++|++++++|+++++.++++
T Consensus 324 gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise 403 (596)
T COG0465 324 GREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISE 403 (596)
T ss_pred hHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccCh
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecCCcccceeeccCCCcccccHHHHHHHHHHHhhHHHHHHHHhCCCCC
Q 003807 600 ESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHI 679 (794)
Q Consensus 600 eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg~alG~~~~~p~~d~~~~t~~~l~~~I~v~LgGraAEel~fG~~~~ 679 (794)
++|+.+||||+|||++++++++++|+||+||+|||+++||+.++|++|++++|+.+++++|+++||||||||++||. ++
T Consensus 404 ~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ 482 (596)
T COG0465 404 AEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGY-EI 482 (596)
T ss_pred hhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC-------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003807 680 TTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD-------------RPSSEMQSRIDAEVVKLLREAYDRVKALLKKH 746 (794)
Q Consensus 680 tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~-------------~~s~~~~~~id~ev~~~l~~~~~ra~~lL~~~ 746 (794)
||||++|+++||++|+.||++||||+++|++.+.. ..|++++..||.||+++++++|+++++||.+|
T Consensus 483 ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~ 562 (596)
T COG0465 483 TTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNEN 562 (596)
T ss_pred cccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998864 26788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHhhccCC
Q 003807 747 EKQLHALANALLEYETLSAEEIKRILLPYR 776 (794)
Q Consensus 747 r~~l~~la~~Lle~etL~~~ei~~il~~~~ 776 (794)
++.++.+++.|+|+|||++++|+.|+....
T Consensus 563 ~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 563 KDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 999999999999999999999999998653
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-91 Score=809.78 Aligned_cols=428 Identities=52% Similarity=0.823 Sum_probs=407.9
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
+..+.++|+||+|++++|++|.|+|.||++|++|.++|.++|+|+||+||||||||+||||+|+|+|+||+.+++++|.+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 45556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccc-----ccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK-----QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~-----~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
+++|.++.++|++|..|+.++||||||||||+++..|. ..+.+.++++||||.+||||....+|||+|+||+|+.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999984 1234568999999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCc
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLT 575 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It 575 (794)
||+||+||||||++|.+++||..+|.+|++.|++++++. +++|+..+|. ||+|+||+|++.|++++...|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999999885 7889999887 9999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecCCcccceeeccCCCcccccHHH
Q 003807 576 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQ 655 (794)
Q Consensus 576 ~~dl~~Ai~ri~~g~~~k~~~ls~eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg~alG~~~~~p~~d~~~~t~~~ 655 (794)
..|++.|++|++.|.++++..++.++++.+||||||||+++|++++.+|+.|++|+| |+++||+++.|.++ +++|++|
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~q 620 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQ 620 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999 66999999999877 8999999
Q ss_pred HHHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC----------CCChHHHHHHH
Q 003807 656 LLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------RPSSEMQSRID 725 (794)
Q Consensus 656 l~~~I~v~LgGraAEel~fG~~~~tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~----------~~s~~~~~~id 725 (794)
|+++|++.||||||||++|| +++||||++||++||++|+.||++|||++++|++++.. ..+..+.+.||
T Consensus 621 l~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id 699 (774)
T KOG0731|consen 621 LFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLID 699 (774)
T ss_pred HHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHH
Confidence 99999999999999999999 78999999999999999999999999999999998632 24567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCCCCCC
Q 003807 726 AEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREGQL 780 (794)
Q Consensus 726 ~ev~~~l~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~~~~~~~~ 780 (794)
.||+++++.+|++|.++|++|++.++.||+.|||+|+|+++|+.+++.+++.+..
T Consensus 700 ~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~ 754 (774)
T KOG0731|consen 700 TEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP 754 (774)
T ss_pred HHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccc
Confidence 9999999999999999999999999999999999999999999999999887663
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.2e-83 Score=749.66 Aligned_cols=426 Identities=49% Similarity=0.773 Sum_probs=399.9
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
......+|+||+|.+++|+++.+++.++++++.|..+|.+.|+|+||+||||||||++|+++|+++++||+++++++|.+
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.+.|.+..+++.+|..|+..+||||||||||.++..|+.. ....++++++||.+||++..+.+++||++||+++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 9999999999999999999999999999999998776532 223467899999999999888999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHH
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTAT 577 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~ 577 (794)
|++++||||||++|.|++|+.++|.+||+.|+++..+..++++..+|+ ||++++++|++.|++++...|+++
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 999999999999999999999999999999999888888899999987 999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecCCcccceeeccCCCcccccHHHHH
Q 003807 578 ELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLL 657 (794)
Q Consensus 578 dl~~Ai~ri~~g~~~k~~~ls~eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg~alG~~~~~p~~d~~~~t~~~l~ 657 (794)
|++.|++++++|.++++ ..++++++++|||||||||++++++..+||++|||+|||+++||+++.|.+++..+||.+++
T Consensus 415 dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~ 493 (638)
T CHL00176 415 EIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQIL 493 (638)
T ss_pred HHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHH
Confidence 99999999999988765 46788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC----------------CCChHHH
Q 003807 658 ARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------------RPSSEMQ 721 (794)
Q Consensus 658 ~~I~v~LgGraAEel~fG~~~~tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~----------------~~s~~~~ 721 (794)
++|++||||||||+++||++++|+||++||++||++|+.||++||||+ +|++.+.. ..++++.
T Consensus 494 ~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 572 (638)
T CHL00176 494 ARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYSEEIA 572 (638)
T ss_pred HHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcCHHHH
Confidence 999999999999999999888999999999999999999999999995 99987642 1357788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCCC
Q 003807 722 SRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYRE 777 (794)
Q Consensus 722 ~~id~ev~~~l~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~~~~~ 777 (794)
..||.||+++|+++|++|++||++||+.|++||++|+|+|||+++||++|+..+..
T Consensus 573 ~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~ 628 (638)
T CHL00176 573 DKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTI 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999988753
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.2e-81 Score=733.87 Aligned_cols=427 Identities=53% Similarity=0.866 Sum_probs=403.7
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.+.....+|+|+.|.+.+++++.+++++++.+..|..++.+.|+|+||+||||||||++|+++|+++++||+.++++++.
T Consensus 143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 143 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred CchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
+.+.|.+...++.+|..++..+||||||||||.++.+|+.. .....+++++||.+||++..+.+++||+|||+|+.
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~ 302 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 302 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh
Confidence 99999999999999999999999999999999999877542 12346799999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
||++++||||||++|.|++||.++|.+||+.|+++.++..++|+..+|+ ||.++|++|++.|+++++..|++
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~ 382 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 382 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccH
Confidence 9999999999999999999999999999999999999889999999997 99999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecCCcccceeeccCCCcccccHHHH
Q 003807 577 TELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQL 656 (794)
Q Consensus 577 ~dl~~Ai~ri~~g~~~k~~~ls~eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg~alG~~~~~p~~d~~~~t~~~l 656 (794)
.|++.|++++.+|.+++...+++++++.+||||+||||++++++..+|+++|||+|||.++||+.+.|.++....||.+|
T Consensus 383 ~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l 462 (644)
T PRK10733 383 VEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKL 462 (644)
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHH
Confidence 99999999999999888888899999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC---------------CCChHHH
Q 003807 657 LARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEMQ 721 (794)
Q Consensus 657 ~~~I~v~LgGraAEel~fG~~~~tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~---------------~~s~~~~ 721 (794)
+++|+++||||||||++||.+++|+||++||++||+||+.||++||||+++|++.+.. ..|+++.
T Consensus 463 ~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~ 542 (644)
T PRK10733 463 ESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETA 542 (644)
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHH
Confidence 9999999999999999999888999999999999999999999999999999987642 1467788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccC
Q 003807 722 SRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPY 775 (794)
Q Consensus 722 ~~id~ev~~~l~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~~~ 775 (794)
..||.||+++|+++|++|++||++||+.|++||++|+|+|||+++||++|+..+
T Consensus 543 ~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~ 596 (644)
T PRK10733 543 RIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999865
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.4e-78 Score=693.30 Aligned_cols=424 Identities=57% Similarity=0.892 Sum_probs=398.0
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
..++.+..+|+||+|++++|+++.+++.++++++.|...|.++|+|+||+||||||||++|+++|+++++||+.++++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC
Q 003807 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (794)
.+.+.|.+.+.++.+|+.|+..+||||||||||.++.++... .....+++++||.+||++..+.+++||+|||+|+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 999999999999999999999999999999999998877542 1234678999999999998888999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCc
Q 003807 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLT 575 (794)
Q Consensus 504 ~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It 575 (794)
.||++++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|. ||.+++++|+..|.++++..|+
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~ 284 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEIT 284 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999888778889999987 9999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecCCcccceeeccCCCcccccHHH
Q 003807 576 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQ 655 (794)
Q Consensus 576 ~~dl~~Ai~ri~~g~~~k~~~ls~eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg~alG~~~~~p~~d~~~~t~~~ 655 (794)
.+|++.|++++..|.+.+...+++++++++||||+||||++++++...|++++||.|||.++||+.+.|..+....|+.+
T Consensus 285 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~ 364 (495)
T TIGR01241 285 MNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQ 364 (495)
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHH
Confidence 99999999999999888777889999999999999999999999988999999999999999999999988888999999
Q ss_pred HHHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC---------------CCChHH
Q 003807 656 LLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEM 720 (794)
Q Consensus 656 l~~~I~v~LgGraAEel~fG~~~~tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~---------------~~s~~~ 720 (794)
++++|+|||||||||+++||+ +|+|+++||++||++|+.||.+||||+++|++.+.. ..++++
T Consensus 365 l~~~i~v~LaGraAE~~~~G~--~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~ 442 (495)
T TIGR01241 365 LLAQIAVLLGGRAAEEIIFGE--VTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEET 442 (495)
T ss_pred HHHHHHHHhhHHHHHHHHhcC--CCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHH
Confidence 999999999999999999994 899999999999999999999999999999887643 235677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhc
Q 003807 721 QSRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILL 773 (794)
Q Consensus 721 ~~~id~ev~~~l~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~ 773 (794)
...+|.+|+++|+++|++|+++|++||+.|++||++|+++|+|+++||++|+.
T Consensus 443 ~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 443 AREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 88999999999999999999999999999999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-52 Score=446.08 Aligned_cols=242 Identities=46% Similarity=0.726 Sum_probs=231.6
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.+.+.+||+||.|+++.+++++|.|+. |++|+.|..+|.++|+|||||||||||||+||||+|++.++.|+.+.+|+++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 456778999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
.+|+|++++.+|++|..|+.++||||||||||+++.+|... +.+.++++.+||++||||.+..+|-||+|||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999998543 23458899999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
|||||+|||||||.|+||+||.++|.+||+.|.++..+.+++|++.||+ ||.++|.+|.+.|.++.+..||+
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~ 382 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTM 382 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecH
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 003807 577 TELEFAKDRILMGTE 591 (794)
Q Consensus 577 ~dl~~Ai~ri~~g~~ 591 (794)
+||..|+++++.+..
T Consensus 383 ~DF~~Av~KV~~~~~ 397 (406)
T COG1222 383 EDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999987543
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.3e-52 Score=506.36 Aligned_cols=300 Identities=21% Similarity=0.261 Sum_probs=256.9
Q ss_pred hhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh-------------------------------
Q 003807 383 FTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF------------------------------- 431 (794)
Q Consensus 383 ~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~------------------------------- 431 (794)
+.++|.++|+||||+||||||||+||||+|+++++||+.++++++.+.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 3567999999999999999999999999999999999999999987533
Q ss_pred ------------hhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---cCCcEEEE
Q 003807 432 ------------VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---QNEGIILM 496 (794)
Q Consensus 432 ------------vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---~~~~VIVI 496 (794)
.+++..+++.+|+.|++.+||||||||||+++.+. ....++++|+.+|++.. ...+|+||
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-----s~~ltL~qLLneLDg~~~~~s~~~VIVI 1776 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-----SNYLSLGLLVNSLSRDCERCSTRNILVI 1776 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-----cceehHHHHHHHhccccccCCCCCEEEE
Confidence 22334459999999999999999999999998752 12346899999999864 45689999
Q ss_pred EEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHH--hccCCCCCc-ccHHHHHH--------HHHHHHHHHHHH
Q 003807 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY--LQDKPLADD-VDVKAIAR--------DLANLVNIAAIK 565 (794)
Q Consensus 497 aATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~--l~~~~l~~d-vdl~~IAr--------DL~nlvn~Aal~ 565 (794)
||||+|+.|||||+||||||+.|.|+.|+..+|.+++... .++..+..+ +|+..+|+ ||+++||+|++.
T Consensus 1777 AATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAali 1856 (2281)
T CHL00206 1777 ASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSI 1856 (2281)
T ss_pred EeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988754 345555533 68899988 999999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeec------CCcccc
Q 003807 566 AAVDGGEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPR------GSALGM 639 (794)
Q Consensus 566 Aa~~~~~~It~~dl~~Ai~ri~~g~~~k~~~ls~eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~pr------g~alG~ 639 (794)
|+++++..|+.++++.|++|+++|.+.+.. +..++ .+|+||+||||++..+...+|+++|||+|+ |.++||
T Consensus 1857 Airq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl~ 1933 (2281)
T CHL00206 1857 SITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLY 1933 (2281)
T ss_pred HHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCccccee
Confidence 999999999999999999999999875533 23333 379999999999999999999999999632 457799
Q ss_pred eeeccCCCcccccHHHHHHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCC
Q 003807 640 VTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDA 706 (794)
Q Consensus 640 ~~~~p~~d~~~~t~~~l~~~I~v~LgGraAEel~fG~~~~tsGa~~DL~~AT~lA~~mv~~~Gms~~ 706 (794)
++++|.+ +.+++.+++.+|.+||||||||+++|+... .|+.||+.|||.+.
T Consensus 1934 ~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vEn 1984 (2281)
T CHL00206 1934 KWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVEN 1984 (2281)
T ss_pred EeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchhh
Confidence 9999875 899999999999999999999999998632 46677777777765
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=417.39 Aligned_cols=238 Identities=43% Similarity=0.716 Sum_probs=226.0
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
-+.+.++|+||.|++++|.+|++.|.+ +++|+.|.++|..+|+|||||||||||||++|||+|++++++|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 456778999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc-ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCCh
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 507 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~-~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ 507 (794)
.+|+|++++.++++|++|+..+|||||+||||+++..|+.. .+...+++++||++|||+....+|+||||||+|+.||+
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ 585 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDP 585 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCH
Confidence 99999999999999999999999999999999999999643 34468999999999999999999999999999999999
Q ss_pred hhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhC--CCCCcHH
Q 003807 508 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDG--GEKLTAT 577 (794)
Q Consensus 508 ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~--~~~It~~ 577 (794)
||+||||||+.|+||+||.+.|.+||+.++++.++.+++|+..||. ||.++|++|+..|.+++ ...|+.+
T Consensus 586 ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~ 665 (693)
T KOG0730|consen 586 ALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQ 665 (693)
T ss_pred HHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHH
Confidence 9999999999999999999999999999999999999999999998 99999999999999986 4678999
Q ss_pred HHHHHHHHHh
Q 003807 578 ELEFAKDRIL 587 (794)
Q Consensus 578 dl~~Ai~ri~ 587 (794)
||++|+..+.
T Consensus 666 hf~~al~~~r 675 (693)
T KOG0730|consen 666 HFEEALKAVR 675 (693)
T ss_pred HHHHHHHhhc
Confidence 9999988653
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-44 Score=400.15 Aligned_cols=238 Identities=42% Similarity=0.638 Sum_probs=221.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
.-+.++|+||.|+++++.+|...|.+ +++|+.|..+|...|.|||||||||||||+||||+|+|+|.+|+.+.+.++..
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 44668999999999999999997776 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChh
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~A 508 (794)
+|+|++++.+|.+|..|+..+|||||+||||+|.++|+... ....+++||||++|||...+.+|.||||||+|+.+|||
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA 663 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA 663 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh
Confidence 99999999999999999999999999999999999997654 44689999999999999999999999999999999999
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHH----------HHHHHHHHHHHHHHHhC------
Q 003807 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQ--DKPLADDVDVKAIAR----------DLANLVNIAAIKAAVDG------ 570 (794)
Q Consensus 509 LlRpGRFdr~I~V~lPd~~eR~eILk~~l~--~~~l~~dvdl~~IAr----------DL~nlvn~Aal~Aa~~~------ 570 (794)
++||||||+.++|++|+..+|.+||+.+.+ +.++.+++|++.||+ ||+.+|++|++.|.++.
T Consensus 664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~ 743 (802)
T KOG0733|consen 664 ILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS 743 (802)
T ss_pred hcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999 778899999999998 99999999999988752
Q ss_pred ----------CCCCcHHHHHHHHHHHhc
Q 003807 571 ----------GEKLTATELEFAKDRILM 588 (794)
Q Consensus 571 ----------~~~It~~dl~~Ai~ri~~ 588 (794)
...++..||++|+.++..
T Consensus 744 ~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 744 SEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred cCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 013677899999998754
No 11
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.4e-43 Score=364.54 Aligned_cols=197 Identities=49% Similarity=0.699 Sum_probs=175.5
Q ss_pred cHHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecCCcccceeeccCCCcccccHH
Q 003807 575 TATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQK 654 (794)
Q Consensus 575 t~~dl~~Ai~ri~~g~~~k~~~ls~eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg~alG~~~~~p~~d~~~~t~~ 654 (794)
|++||++|++++++|.+++...+++++|+++||||||||||+++++..++++++||+|||.++||+.+.|.++....||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 68999999999999999877889999999999999999999999998899999999999999999999999888889999
Q ss_pred HHHHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC----------------CCCh
Q 003807 655 QLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------------RPSS 718 (794)
Q Consensus 655 ~l~~~I~v~LgGraAEel~fG~~~~tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~----------------~~s~ 718 (794)
+++++|+|+|||||||+++||.+++|+|+++||++||++|+.||.+||||+++|++.+.. ..+.
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-H
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcch
Confidence 999999999999999999999889999999999999999999999999999999987532 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHh
Q 003807 719 EMQSRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRI 771 (794)
Q Consensus 719 ~~~~~id~ev~~~l~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~i 771 (794)
++...+|.+|+++|+++|++|++||++||+.|++||++|+++++|+++||++|
T Consensus 161 ~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 161 ETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 78889999999999999999999999999999999999999999999999986
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-41 Score=374.30 Aligned_cols=216 Identities=42% Similarity=0.691 Sum_probs=206.0
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 433 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG 433 (794)
.++|+||.|.+....+|.+++..+++|+.|..+|..+|+||||+||||||||+||+|||+++++||+.+++.+++..+.|
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccc-hHHHHHHHHHhhhccccC----CcEEEEEEcCCCCCCChh
Q 003807 434 VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-TKKTLHQLLVEMDGFEQN----EGIILMAATNLPDILDPA 508 (794)
Q Consensus 434 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~-~~~~LnqLL~eLDg~~~~----~~VIVIaATN~p~~LD~A 508 (794)
++++++|++|++|+..+|||+||||||+++++|...+.+ .++++.|||..||++... .+|+||||||+|+.||++
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa 345 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA 345 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH
Confidence 999999999999999999999999999999999865444 378899999999998544 679999999999999999
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHh
Q 003807 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVD 569 (794)
Q Consensus 509 LlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~ 569 (794)
|+|+||||+.|.+..|+..+|.+||+..+++..+..++|+..||+ ||..+|.+|+..|.++
T Consensus 346 LRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 346 LRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred HhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999876
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-40 Score=339.84 Aligned_cols=238 Identities=38% Similarity=0.624 Sum_probs=223.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
+++.+++.||.|+|-.|+++++.++. |.+.+.|...|..+|+|||+|||||||||+||+|+|+.....|+.+.+++|..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 56778999999999999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
+|.|++...+|++|..|+.++|+||||||||++..+|-.. ..+.++++-.||+.||||.+..+|-||.+||+.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 9999999999999999999999999999999998877322 223477888999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHH
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTAT 577 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~ 577 (794)
||||+||||+|+.|+||+||.++++-++.....+..+.+++|++.+.. ||..+|++|.+.|.++++-.|...
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~k 387 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQK 387 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHH
Confidence 999999999999999999999999999999999999999999988754 999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 003807 578 ELEFAKDRILM 588 (794)
Q Consensus 578 dl~~Ai~ri~~ 588 (794)
|++.+....+.
T Consensus 388 d~e~ay~~~vk 398 (408)
T KOG0727|consen 388 DFEKAYKTVVK 398 (408)
T ss_pred HHHHHHHhhcC
Confidence 99999987654
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-41 Score=344.55 Aligned_cols=243 Identities=39% Similarity=0.648 Sum_probs=230.2
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
++++.+|+.||.|+.+..+.|+++++. +.+|++|-.+|..+|+|||||||||||||++|||+|++.+.-|+.+-+|+++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 567888999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
.+|+|+++..+|++|+.|+....||||+||||++++.|-.. ..+.++++..|+.++|||.++.++-|+.+||+|+.
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 99999999999999999999999999999999999987432 23457888999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
|||||+||||+|+.++|.+||.++|..||+.|.+......++-++.||+ +|+.+|.+|.+.|++..++..|.
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~ate 408 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATE 408 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhH
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHhccccc
Q 003807 577 TELEFAKDRILMGTER 592 (794)
Q Consensus 577 ~dl~~Ai~ri~~g~~~ 592 (794)
.||..|+++++.|..+
T Consensus 409 kdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 409 KDFLDAVNKVVKGYAK 424 (435)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988644
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-40 Score=335.58 Aligned_cols=240 Identities=38% Similarity=0.640 Sum_probs=226.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
+..+++=|.|.+...++++++++. .++|+.|..+|...|+|+|||||||||||+||+|+|+...+.|+.++++++..+|
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 446899999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCCh
Q 003807 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 507 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ 507 (794)
.|++...+|++|-.|+.++|+|||.||||++|+.|...+ .+.+++...||+.+|||....++-||.+||+.+.||+
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~ 301 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDP 301 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccH
Confidence 999999999999999999999999999999999885432 2347889999999999999999999999999999999
Q ss_pred hhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHH
Q 003807 508 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATEL 579 (794)
Q Consensus 508 ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl 579 (794)
||+||||+|+.|+||+|+.+.|.+||+.|.++.++...+++..||. ++..+|.+|.+.|.++.+-.+|.+||
T Consensus 302 allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedf 381 (404)
T KOG0728|consen 302 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 381 (404)
T ss_pred hhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHH
Confidence 9999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHhccccc
Q 003807 580 EFAKDRILMGTER 592 (794)
Q Consensus 580 ~~Ai~ri~~g~~~ 592 (794)
+-|..+++.....
T Consensus 382 emav~kvm~k~~e 394 (404)
T KOG0728|consen 382 EMAVAKVMQKDSE 394 (404)
T ss_pred HHHHHHHHhcccc
Confidence 9999998865433
No 16
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=370.91 Aligned_cols=239 Identities=36% Similarity=0.631 Sum_probs=217.0
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
.|+-|.++|+||.|.+++|.++.+.+.. |++|+.|.. |.+...|||||||||||||++|||+|.|+...|+.+.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3667889999999999999999999888 999999875 77777899999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc---ccchHHHHHHHHHhhhccc--cCCcEEEEEEcCCC
Q 003807 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW---EGHTKKTLHQLLVEMDGFE--QNEGIILMAATNLP 502 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~---~~~~~~~LnqLL~eLDg~~--~~~~VIVIaATN~p 502 (794)
..||+|++++++|++|++||..+|||||+||+|++.++|+.. ++-..+++.|||.+|||+. ...+|+||||||+|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999999754 3456899999999999998 45689999999999
Q ss_pred CCCChhhcCCCccceEEEccCCC-HHHHHHHHHHHhccCCCCCcccHHHHHH---------HHHHHHHHHHHHHHHhC--
Q 003807 503 DILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYLQDKPLADDVDVKAIAR---------DLANLVNIAAIKAAVDG-- 570 (794)
Q Consensus 503 ~~LD~ALlRpGRFdr~I~V~lPd-~~eR~eILk~~l~~~~l~~dvdl~~IAr---------DL~nlvn~Aal~Aa~~~-- 570 (794)
+.|||||+||||||+.+++.+++ .+.+..+|+...++..++.++|+..||+ |+-.+|..|.+.|+++.
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998775 5677789999999999999999999998 99999999998888762
Q ss_pred ---------------CCCCcHHHHHHHHHHHhc
Q 003807 571 ---------------GEKLTATELEFAKDRILM 588 (794)
Q Consensus 571 ---------------~~~It~~dl~~Ai~ri~~ 588 (794)
.-.|+++||..+.++...
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 124788999998887643
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-40 Score=344.40 Aligned_cols=240 Identities=37% Similarity=0.640 Sum_probs=226.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
..+..+|.||.|++...+++++.++. |.+|+.|..+|.++|+||+|||+||||||+||+|+|+.....|+.+-++++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 44567999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.|.|.+.+.+|++|+.|..++|+|+||||||+++.+|=..+ .+.++++..||+.+|||..+..|-||.|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999884321 23478888999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHH
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTAT 577 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~ 577 (794)
||||+||||+|+.|.|++||...++.||..|..+..+..+++++.+.. ||..+|.+|.+.|.++.+..++++
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~ 417 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTME 417 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHH
Confidence 999999999999999999999999999999999999999999998865 999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 003807 578 ELEFAKDRILMGT 590 (794)
Q Consensus 578 dl~~Ai~ri~~g~ 590 (794)
||..|.++++...
T Consensus 418 DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 418 DFKKAKEKVLYKK 430 (440)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=334.36 Aligned_cols=230 Identities=40% Similarity=0.673 Sum_probs=214.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~ 430 (794)
..+..+|+||+|++++|+..+-++++|.+|++|..+ .|++||+|||||||||++|||+|+++++||+.+...++...
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 345679999999999999999999999999998655 58999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc--ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChh
Q 003807 431 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (794)
Q Consensus 431 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~--~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~A 508 (794)
++|.++++++++|+.|++.+|||+||||+|+++-.|.-+ .+.....+|.||++|||+..+.||+.||+||+|+.||+|
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPA 270 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHH
Confidence 999999999999999999999999999999998776533 355678999999999999999999999999999999999
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHH-HHHHHHHHHHHHhCCCCCcHHHH
Q 003807 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLA-NLVNIAAIKAAVDGGEKLTATEL 579 (794)
Q Consensus 509 LlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~-nlvn~Aal~Aa~~~~~~It~~dl 579 (794)
+++ ||...|+|.+|+.++|.+|++.+++..++.-+.++..++. ||. .++..|-..|..++++.|+.+|+
T Consensus 271 iRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edi 348 (368)
T COG1223 271 IRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDI 348 (368)
T ss_pred HHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHH
Confidence 998 9999999999999999999999999999999999999987 554 67788888999999999999999
Q ss_pred HHHHHH
Q 003807 580 EFAKDR 585 (794)
Q Consensus 580 ~~Ai~r 585 (794)
++|+.+
T Consensus 349 e~al~k 354 (368)
T COG1223 349 EKALKK 354 (368)
T ss_pred HHHHHh
Confidence 999987
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-39 Score=333.96 Aligned_cols=239 Identities=38% Similarity=0.630 Sum_probs=224.4
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.+++..+++||.|++...++|.+.+.. +.++++|..+|.++|+|+|+|||||||||++|||.|...+..|+.+.+..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 466778999999999999999886555 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
.+|.|.+++.+|+.|..|+..+|+||||||+|++|.+|-.. ..+.++++..||+.+|||..+..|-|||+||+.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 99999999999999999999999999999999999988543 23457889999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
|||||+|.||+||.|+||.|+.+.|..|++.|.++..+.++++++.+|+ ++..+|-+|.+.|.+++...|+.
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~h 402 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTH 402 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccH
Confidence 9999999999999999999999999999999999999999999999999 78889999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 003807 577 TELEFAKDRILM 588 (794)
Q Consensus 577 ~dl~~Ai~ri~~ 588 (794)
+||-+++-.+..
T Consensus 403 eDfmegI~eVqa 414 (424)
T KOG0652|consen 403 EDFMEGILEVQA 414 (424)
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2e-37 Score=345.37 Aligned_cols=241 Identities=38% Similarity=0.620 Sum_probs=223.7
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.+.+..+|+||.|++.+|+++++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 355678999999999999999999885 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
..|.|.+...++++|..|+..+||||||||||.++.+|.... ....+.+.+++..||++....+++||+|||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 999999999999999999999999999999999987764221 2345788899999999988889999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
||++++||||||+.|+|++|+.++|.+||+.++.+..+..++|+..+|. ||.++|++|++.|.++++..|+.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~ 376 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILP 376 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 9999999999999999999999999999999999988889999999987 99999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 003807 577 TELEFAKDRILMGT 590 (794)
Q Consensus 577 ~dl~~Ai~ri~~g~ 590 (794)
+||..|+.+++.+.
T Consensus 377 ~df~~A~~~v~~~~ 390 (398)
T PTZ00454 377 KDFEKGYKTVVRKT 390 (398)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=338.54 Aligned_cols=239 Identities=34% Similarity=0.542 Sum_probs=213.2
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
..+....+.++|+||+|+.++|+-|+|.|.. +..|+-|+. ..++-+|||++||||||||+||||+|.|++..||.|+.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 3444566778999999999999999997665 899988874 34555999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccc--hHHHHHHHHHhhhccccC-Cc---EEEEEE
Q 003807 425 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFEQN-EG---IILMAA 498 (794)
Q Consensus 425 se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~--~~~~LnqLL~eLDg~~~~-~~---VIVIaA 498 (794)
+.+.++|-|++++.+|-+|+.|+..+|++|||||||+|+.+|+..+.+ +++.-+.||.+|||.... .+ |.|+|+
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 999999999999999999999999999999999999999999876533 578889999999998543 33 899999
Q ss_pred cCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhC
Q 003807 499 TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDG 570 (794)
Q Consensus 499 TN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~ 570 (794)
||.|++||.||+| ||.+.|+||+|+.++|..+|+..++...+.++++++.||. ||.|+|++|++++.++.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999998 99999999999998853
Q ss_pred C-----------------CCCcHHHHHHHHHHHh
Q 003807 571 G-----------------EKLTATELEFAKDRIL 587 (794)
Q Consensus 571 ~-----------------~~It~~dl~~Ai~ri~ 587 (794)
. ..|++.||+.|+.++-
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 2 3477778888877653
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.1e-36 Score=336.87 Aligned_cols=243 Identities=46% Similarity=0.700 Sum_probs=224.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
+.+..+|+||.|.+++++++.+.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 44567899999999999999998877 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.|.|.+...++.+|..++...||||||||+|.++.++.... ....+++.+++.+++++....+++||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999987765332 22356788999999998888899999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHH
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTAT 577 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~ 577 (794)
|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..+|. ||.++|++|+..|.+++...|+.+
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~ 363 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME 363 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 999999999999999999999999999999999988888899999998 999999999999999999999999
Q ss_pred HHHHHHHHHhcccccc
Q 003807 578 ELEFAKDRILMGTERK 593 (794)
Q Consensus 578 dl~~Ai~ri~~g~~~k 593 (794)
||..|++++..+....
T Consensus 364 d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 364 DFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHhcccccc
Confidence 9999999987765443
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.1e-36 Score=337.59 Aligned_cols=239 Identities=38% Similarity=0.660 Sum_probs=221.6
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
+.+..+|+||.|+++.++++.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45667999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.|.|.+...++.+|..|+...||||||||||.++.++.... ....+++.++|..+|++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999987764321 12356788999999999888899999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHH
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTAT 577 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~ 577 (794)
|++++||||||+.|+|++||.++|.+||+.|+.+..+..++|+..++. ||.++|++|++.|.++++..|+.+
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~ 415 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQA 415 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHH
Confidence 999999999999999999999999999999999888888999999886 999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 003807 578 ELEFAKDRILMG 589 (794)
Q Consensus 578 dl~~Ai~ri~~g 589 (794)
||..|+++++..
T Consensus 416 D~~~A~~~v~~~ 427 (438)
T PTZ00361 416 DFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHhh
Confidence 999999998654
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-36 Score=342.46 Aligned_cols=237 Identities=48% Similarity=0.721 Sum_probs=221.8
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
...+..+|+|+.|.+++|+.+++.+.+ ++.++.|...+.+.|+|+|||||||||||++|+|+|.+++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 456678999999999999999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccc-hHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCCh
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 507 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~-~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ 507 (794)
.+|+|++++.++.+|..|+..+||||||||+|++.+.|+..... ..+.+++||.+|++.....+|+||+|||+|+.+|+
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~ 393 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDP 393 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCH
Confidence 99999999999999999999999999999999999988765433 36999999999999999999999999999999999
Q ss_pred hhcCCCccceEEEccCCCHHHHHHHHHHHhccCC--CCCcccHHHHHH--------HHHHHHHHHHHHHHHhC-CCCCcH
Q 003807 508 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP--LADDVDVKAIAR--------DLANLVNIAAIKAAVDG-GEKLTA 576 (794)
Q Consensus 508 ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~--l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~-~~~It~ 576 (794)
+++||||||+.++|++||..+|.+|++.|+++.. +..++|+..+++ ||.++|.+|++.+.++. ...|++
T Consensus 394 a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~ 473 (494)
T COG0464 394 ALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTL 473 (494)
T ss_pred hhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccH
Confidence 9999999999999999999999999999998544 457899999997 99999999999999998 788999
Q ss_pred HHHHHHHHHH
Q 003807 577 TELEFAKDRI 586 (794)
Q Consensus 577 ~dl~~Ai~ri 586 (794)
+|+..|+.++
T Consensus 474 ~~~~~a~~~~ 483 (494)
T COG0464 474 DDFLDALKKI 483 (494)
T ss_pred HHHHHHHHhc
Confidence 9999999873
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.9e-35 Score=351.16 Aligned_cols=235 Identities=43% Similarity=0.704 Sum_probs=217.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~ 430 (794)
.+.++|+||.|.+++|+.|++.+.+ +++++.|..+|.+.|+|+|||||||||||++|+++|++++.+|+.++++++..+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4567899999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc--cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChh
Q 003807 431 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (794)
Q Consensus 431 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~--~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~A 508 (794)
|+|.+++.++.+|..|+...||||||||||++.+.|+... ....+.+++||.+||++....+++||+|||+|+.||++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 9999999999999999999999999999999998776432 23467899999999999888899999999999999999
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhC----------
Q 003807 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDG---------- 570 (794)
Q Consensus 509 LlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~---------- 570 (794)
++||||||+.|+|++||.++|.+||+.+.++.++..++|+..+|+ ||.++|++|++.|.++.
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999999999999999999999999999999889999999998 99999999999888742
Q ss_pred --------CCCCcHHHHHHHHHHH
Q 003807 571 --------GEKLTATELEFAKDRI 586 (794)
Q Consensus 571 --------~~~It~~dl~~Ai~ri 586 (794)
...|+++||..|+.++
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred cccccccccCcccHHHHHHHHHHc
Confidence 1268999999999875
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-35 Score=331.12 Aligned_cols=216 Identities=39% Similarity=0.650 Sum_probs=205.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~v 432 (794)
..+|+||.|..++|+.|++++++ -+.|..|...+.+.+.|||||||||||||+||-|+|..++..|+.+.+.++..+|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 37899999999999999999999 78899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc-ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcC
Q 003807 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR 511 (794)
Q Consensus 433 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~-~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlR 511 (794)
|.+++.+|++|..|+..+|||+|+||+|++.++|+.. .+-+.+.+||||.+|||.+.-.||.|+|||.+|+.|||||+|
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcC
Confidence 9999999999999999999999999999999999865 466789999999999999999999999999999999999999
Q ss_pred CCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHh
Q 003807 512 PGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVD 569 (794)
Q Consensus 512 pGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~ 569 (794)
|||+|+.++.+.|+..+|.+|++........+.++|++.+|. ||..++..|.+.|..+
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888999999999998 9999999988777653
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=8.8e-34 Score=312.88 Aligned_cols=236 Identities=46% Similarity=0.730 Sum_probs=217.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
+.+..+|+||.|.+++++++.+.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 44667899999999999999998876 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.|.|.+...++.+|..++...|+||||||+|.++..+.... .....++.+++.+++++....++.||+|||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999987664321 22356788999999998777889999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHH
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTAT 577 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~ 577 (794)
|++++||||||+.|+|+.|+.++|.+||+.++.+..+..++++..+++ ||.+++++|+..|.++++..|+.+
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~ 354 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMD 354 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Confidence 999999999999999999999999999999998888888899999988 999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003807 578 ELEFAKDRI 586 (794)
Q Consensus 578 dl~~Ai~ri 586 (794)
||..|++++
T Consensus 355 d~~~a~~~~ 363 (364)
T TIGR01242 355 DFIKAVEKV 363 (364)
T ss_pred HHHHHHHHh
Confidence 999999876
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8.3e-34 Score=323.04 Aligned_cols=231 Identities=26% Similarity=0.407 Sum_probs=203.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~v 432 (794)
+..+|+||.|++.+|+.|.+....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+...|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 3468999999999999998866543 23445678999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccc--cccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhc
Q 003807 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ--WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (794)
Q Consensus 433 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~--~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALl 510 (794)
|.++.+++.+|+.|+..+||||||||||.+...+.. ..+...+.+++++..|+. .+.+|+||+|||+++.||++++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~all 378 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEIL 378 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHh
Confidence 999999999999999999999999999998765432 233457788899998884 4567999999999999999999
Q ss_pred CCCccceEEEccCCCHHHHHHHHHHHhccCCCC--CcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 511 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA--DDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 511 RpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~--~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
|+||||+.++|++|+.++|.+||+.|+++.... .+.|+..+|+ ||+++|++|+..|..++ +.++.+|+.
T Consensus 379 R~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~ 457 (489)
T CHL00195 379 RKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDIL 457 (489)
T ss_pred CCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHH
Confidence 999999999999999999999999999876432 4788999988 99999999999988766 679999999
Q ss_pred HHHHHHhc
Q 003807 581 FAKDRILM 588 (794)
Q Consensus 581 ~Ai~ri~~ 588 (794)
.|+.++..
T Consensus 458 ~a~~~~~P 465 (489)
T CHL00195 458 LALKQFIP 465 (489)
T ss_pred HHHHhcCC
Confidence 99987754
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=305.36 Aligned_cols=235 Identities=39% Similarity=0.621 Sum_probs=218.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
...+|+++.|.-+...++++.++. +.+|..|.+.|.++|++++||||||||||++|+++|..+|++|+.++.+++.+.|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 346899999999999999998887 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCCh
Q 003807 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 507 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ 507 (794)
.|++++.+|+.|..|+...|||||+||||++++++.... ...++++..|+++||++....+|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 999999999999999999999999999999999874322 2346788899999999999999999999999999999
Q ss_pred hhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHH
Q 003807 508 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATEL 579 (794)
Q Consensus 508 ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl 579 (794)
+|+||||+|+.+++|+|+...|..|++.|.+.......+|.+.+.+ |+.|.|.+|.+.|+++.+..+-++|+
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~ 366 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDF 366 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHH
Confidence 9999999999999999999999999999999888888899888877 99999999999999999899999999
Q ss_pred HHHHHHHh
Q 003807 580 EFAKDRIL 587 (794)
Q Consensus 580 ~~Ai~ri~ 587 (794)
-.++.++.
T Consensus 367 ~k~vrk~~ 374 (388)
T KOG0651|consen 367 MKLVRKQA 374 (388)
T ss_pred HHHHHHHH
Confidence 88887653
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=303.08 Aligned_cols=206 Identities=39% Similarity=0.661 Sum_probs=182.9
Q ss_pred cccccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 345 NKEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 345 ~~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
+..+..+++.++|+||+|.+.+|+.|++.|-. ++.|+.|+. +.++-+|+||||||||||+.||+|+|.|++..||.++
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 34456678889999999999999999996655 899998873 2334589999999999999999999999999999999
Q ss_pred CcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccccc-chHHHHHHHHHhhhcccc-CCcEEEEEEcCC
Q 003807 424 GSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQ-NEGIILMAATNL 501 (794)
Q Consensus 424 ~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~-~~~~~LnqLL~eLDg~~~-~~~VIVIaATN~ 501 (794)
.++++++|+|++++.++.+|+.|+.+.|+||||||||.+++.|+.... ..+++-..||.+|+|... +.+|+|+++||-
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 999999999999999999999999999999999999999999876644 457788899999999854 568999999999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 003807 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR 553 (794)
Q Consensus 502 p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr 553 (794)
|+.||.|++| ||+++|+||+|+...|..+++.|+...+.. .+-|+..+++
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~ 329 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELAR 329 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHh
Confidence 9999999999 999999999999999999999999876543 4567777776
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=304.71 Aligned_cols=221 Identities=37% Similarity=0.580 Sum_probs=200.4
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLG-GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG-~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
-+.|..-.++|+||.|+++++++|++.|.. ++.|+.|..-+ .++|+||||+||||||||++|+|+|.++|.+|+.++.
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 445666778999999999999999998777 99999986322 4578999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccccc-chHHHHHHHHHhhhccccCCc--EEEEEEcCC
Q 003807 425 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEG--IILMAATNL 501 (794)
Q Consensus 425 se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~-~~~~~LnqLL~eLDg~~~~~~--VIVIaATN~ 501 (794)
+.+.++|.|++.+.++.+|..|.+-.||||||||+|.+.+.|...+. .....-+++....||+..+.+ |+|+||||+
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 99999999999999999999999999999999999999888843332 245677899999999977655 999999999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHh
Q 003807 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVD 569 (794)
Q Consensus 502 p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~ 569 (794)
|.+||.|++| |+.++++|++|+..+|.+||+.++++.++++++|+..+|+ ||.++|..|+...+++
T Consensus 241 P~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 9999999999 9999999999999999999999999999999999999998 9999999999888764
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.1e-32 Score=314.26 Aligned_cols=254 Identities=33% Similarity=0.528 Sum_probs=203.6
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------- 418 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-------- 418 (794)
+..+.+..+|+||.|+++.++++++.+.. +.+++.|..+|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 44556778999999999999999998876 889999999999999999999999999999999999998654
Q ss_pred --EEEEeCcchhhhhhhhhhHHHHHHHHHHHhC----CCeEEEEcCcccccccccccc--cchHHHHHHHHHhhhccccC
Q 003807 419 --FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFEQN 490 (794)
Q Consensus 419 --fi~is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~--~~~~~~LnqLL~eLDg~~~~ 490 (794)
|+.++++++...|+|++++.++.+|+.++.. .||||||||+|.++.+|+... ......+++||.+||++...
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 6677788888999999999999999998864 699999999999988775432 22356789999999999888
Q ss_pred CcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC-CCCC---------cccHHHHHH-------
Q 003807 491 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-PLAD---------DVDVKAIAR------- 553 (794)
Q Consensus 491 ~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~-~l~~---------dvdl~~IAr------- 553 (794)
.+++||+|||+++.||+|++||||||++|+|++|+.++|.+||+.|+... ++.. ..+...+++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999998642 3311 111222211
Q ss_pred ------------------------------HHHHHHHHHHHHHHHh----CCCCCcHHHHHHHHHHHhccccccccccch
Q 003807 554 ------------------------------DLANLVNIAAIKAAVD----GGEKLTATELEFAKDRILMGTERKTMFISE 599 (794)
Q Consensus 554 ------------------------------DL~nlvn~Aal~Aa~~----~~~~It~~dl~~Ai~ri~~g~~~k~~~ls~ 599 (794)
+|+|+|.+|...|.++ +...|+.+|+..|+..-....+.-+..-.+
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~ 491 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNP 491 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCH
Confidence 5677777777666654 345677777777777655544443333344
Q ss_pred hh
Q 003807 600 ES 601 (794)
Q Consensus 600 ee 601 (794)
++
T Consensus 492 ~~ 493 (512)
T TIGR03689 492 DD 493 (512)
T ss_pred HH
Confidence 43
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=1.6e-30 Score=282.72 Aligned_cols=257 Identities=16% Similarity=0.176 Sum_probs=185.6
Q ss_pred CCCCcccc-cCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 353 NVKTFKDV-KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 353 ~~~tFdDV-vG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
...+|+++ .|+--.+.-+..++..+...-. ...|.++|++++||||||||||++|+++|+++|++|+.++++++...|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l-~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFL-ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhh-hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34578888 5566666666555544322111 236789999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHh-----CCCeEEEEcCcccccccccccccc-hHHHH-HHHHHhhhcc------------ccCCc
Q 003807 432 VGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGH-TKKTL-HQLLVEMDGF------------EQNEG 492 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~-~~~~L-nqLL~eLDg~------------~~~~~ 492 (794)
+|++++.+|++|..|+. .+||||||||||+++++++..+.. ..+.+ .+|+++||+. ....+
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~ 268 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPR 268 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCC
Confidence 99999999999999975 469999999999999988643322 24444 6899988863 34567
Q ss_pred EEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH-------HHHHHHHHH-HH
Q 003807 493 IILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR-------DLANLVNIA-AI 564 (794)
Q Consensus 493 VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr-------DL~nlvn~A-al 564 (794)
|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..+. ..|+..|+. |....++.- .-
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 999999999999999999999999975 5899999999999999987665 577777776 222221110 00
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhHHHhh
Q 003807 565 KAAVDGGEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAF 617 (794)
Q Consensus 565 ~Aa~~~~~~It~~dl~~Ai~ri~~g~~~k~~~ls~eek~~~A~HEaGHAlva~ 617 (794)
.+.+ +.|..--++..-.+++...+ ++..+......+-.+-|+||.++..
T Consensus 346 ~~v~---~~i~~~g~~~~~~~l~~~~~-~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 346 DEVR---KWIAEVGVENLGKKLVNSKK-GPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHH---HHHHHhhHHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 0000 01111112222233333222 3334455555667788999999864
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.5e-30 Score=290.40 Aligned_cols=233 Identities=38% Similarity=0.566 Sum_probs=216.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
+..+ +++.|+......+++.+.+ +.++..|...|.++|+|+|+|||||||||.+++++|++.++.++.++++++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4456 7999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCC-CeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhc
Q 003807 432 VGVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALl 510 (794)
.|++++.+|..|+.|.+.+ |+|+||||||+++++|....+...++..||+..||+.....+++||++||+|+.||++++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alR 338 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALR 338 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhh
Confidence 9999999999999999998 999999999999998876555567899999999999998899999999999999999999
Q ss_pred CCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 511 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 511 RpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
| ||||+.+.+..|+..+|.+|++.+.++.+..+++++..+|. ||..+|.+|++.+.++ +++++..|
T Consensus 339 R-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A 412 (693)
T KOG0730|consen 339 R-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEA 412 (693)
T ss_pred c-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHH
Confidence 9 99999999999999999999999999999888899999998 9999999999999887 88899988
Q ss_pred HHHHhccccc
Q 003807 583 KDRILMGTER 592 (794)
Q Consensus 583 i~ri~~g~~~ 592 (794)
...+.....+
T Consensus 413 ~~~i~psa~R 422 (693)
T KOG0730|consen 413 LMGIRPSALR 422 (693)
T ss_pred HhcCCchhhh
Confidence 8776554433
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4.5e-29 Score=298.14 Aligned_cols=236 Identities=44% Similarity=0.680 Sum_probs=213.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
+..+|+||+|.+++++.+.+++.. +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 457999999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhc
Q 003807 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALl 510 (794)
.|.....++.+|+.+....|+||||||||.+.++++... ......+++|+..|+++.....++||++||.++.||++++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~ 332 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALR 332 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHh
Confidence 999999999999999999999999999999988775432 2346788999999999988889999999999999999999
Q ss_pred CCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhC------------
Q 003807 511 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDG------------ 570 (794)
Q Consensus 511 RpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~------------ 570 (794)
|+|||++.+.++.|+.++|.+||+.+.+...+..++++..++. |+..++++|+..+.++.
T Consensus 333 r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~ 412 (733)
T TIGR01243 333 RPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEE 412 (733)
T ss_pred CchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999888888899999987 89999999988876642
Q ss_pred -------CCCCcHHHHHHHHHHHhc
Q 003807 571 -------GEKLTATELEFAKDRILM 588 (794)
Q Consensus 571 -------~~~It~~dl~~Ai~ri~~ 588 (794)
...++.+|+..|+..+..
T Consensus 413 i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 413 IPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred ccchhcccccccHHHHHHHHhhccc
Confidence 124778899988876654
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-29 Score=296.39 Aligned_cols=241 Identities=35% Similarity=0.546 Sum_probs=209.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 425 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~s 425 (794)
+..++|++|.|.+.++..|+|+|.. |..|+.|..++..+|+|||++||||||||+.|+|+|..+ .+.|+.-.+.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4456899999999999999999888 899999999999999999999999999999999999977 4678888999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 426 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
+..++|+|+.+..++.+|+.|++..|+|||.||||-+.+.|+... .....+...||..|||...+..|+||+|||+|+.
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda 418 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA 418 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccc
Confidence 999999999999999999999999999999999999999886543 3346788899999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHhCC----
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVDGG---- 571 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~---- 571 (794)
+|+||+||||||+.++|++|+.+.|.+|+..|.++..-. ..--+..+|. ||+.+|.+|++.+.++.-
T Consensus 419 ~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y 498 (1080)
T KOG0732|consen 419 IDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIY 498 (1080)
T ss_pred cchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeee
Confidence 999999999999999999999999999999998765422 1222444555 999999999999987642
Q ss_pred ------------CCCcHHHHHHHHHHHhccccc
Q 003807 572 ------------EKLTATELEFAKDRILMGTER 592 (794)
Q Consensus 572 ------------~~It~~dl~~Ai~ri~~g~~~ 592 (794)
..|...||-.|..++.....+
T Consensus 499 ~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 499 SSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred cccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 236667777777776654433
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-28 Score=270.72 Aligned_cols=234 Identities=34% Similarity=0.484 Sum_probs=196.5
Q ss_pred CCCccc--ccCCHHHHHHHHH--HHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-CEEEEeCcchh
Q 003807 354 VKTFKD--VKGCDDAKQELVE--VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-PFFYRAGSEFE 428 (794)
Q Consensus 354 ~~tFdD--VvG~deaK~eL~e--iV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~-pfi~is~se~~ 428 (794)
...|++ |.|.+..-..+-+ +...+--|+.-.++|.+--+|+|||||||||||++||.|..-++. +--.+++.++.
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL 294 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 294 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH
Confidence 356776 5677755444422 233345566777899999999999999999999999999998864 55678999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhC--------CCeEEEEcCcccccccccccc---cchHHHHHHHHHhhhccccCCcEEEEE
Q 003807 429 EMFVGVGARRVRSLFQAAKKK--------APCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMA 497 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~--------aP~ILfIDEIDaL~~~r~~~~---~~~~~~LnqLL~eLDg~~~~~~VIVIa 497 (794)
.+|+|++++.+|.+|..|... .-.||++||||+++.+|+... +-..+++||||..|||..+-++|+||+
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIG 374 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIG 374 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEe
Confidence 999999999999999998541 224999999999999987643 446899999999999999999999999
Q ss_pred EcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC----CCCCcccHHHHHH--------HHHHHHHHHHHH
Q 003807 498 ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PLADDVDVKAIAR--------DLANLVNIAAIK 565 (794)
Q Consensus 498 ATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~----~l~~dvdl~~IAr--------DL~nlvn~Aal~ 565 (794)
.||+.+.||.||+|||||..++++.+||..+|.+||+.|.++. .+..++|+..||+ +|+.++..|...
T Consensus 375 MTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~ 454 (744)
T KOG0741|consen 375 MTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSF 454 (744)
T ss_pred ccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998653 5678999999998 999999999777
Q ss_pred HHHhC---------------CCCCcHHHHHHHHHHHh
Q 003807 566 AAVDG---------------GEKLTATELEFAKDRIL 587 (794)
Q Consensus 566 Aa~~~---------------~~~It~~dl~~Ai~ri~ 587 (794)
|..+. .-.|+++||..|++.+.
T Consensus 455 A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 455 AMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred HHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 76542 23689999999999764
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-27 Score=264.13 Aligned_cols=239 Identities=35% Similarity=0.545 Sum_probs=201.6
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
+++....+.+.|+|+.|.+.+|+.+.+.+-+ +..++.|..+ ..+++|+||.||||||||+|++|||.|.+..|+.+++
T Consensus 141 ~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSa 219 (428)
T KOG0740|consen 141 NEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISA 219 (428)
T ss_pred HHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccH
Confidence 3445555667899999999999999998888 6778888764 3456899999999999999999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhccc--cCCcEEEEEEcCC
Q 003807 425 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFE--QNEGIILMAATNL 501 (794)
Q Consensus 425 se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~--~~~~VIVIaATN~ 501 (794)
+.+...|+|.+++.++.+|.-|+...|+|+||||||.+..+|.... ....+...++|..+++.. .+.+|+||||||.
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 9999999999999999999999999999999999999999886543 335678888888888764 3568999999999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC-CCCcccHHHHHH--------HHHHHHHHHHHHHHHhCC-
Q 003807 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP-LADDVDVKAIAR--------DLANLVNIAAIKAAVDGG- 571 (794)
Q Consensus 502 p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~-l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~- 571 (794)
|+.+|.+++| ||.++++||+||.+.|..+|+..+.+.+ ...+.|+..|++ ||.++|.+|++--.+...
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 9999999999999999999999997763 234578888888 999999999765444332
Q ss_pred ------------CCCcHHHHHHHHHHHh
Q 003807 572 ------------EKLTATELEFAKDRIL 587 (794)
Q Consensus 572 ------------~~It~~dl~~Ai~ri~ 587 (794)
..|+..|++.+...+.
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhhc
Confidence 3455556666665543
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2.6e-21 Score=180.13 Aligned_cols=129 Identities=44% Similarity=0.720 Sum_probs=114.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCC-CeEEEEcCcccccccccc-ccc
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQ-WEG 471 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~-~~~ 471 (794)
|||+||||||||++|+++|+.++.+++.++++++...+.+...+.++.+|..++... |+||||||+|.+...... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998889999999999999999887 999999999999887621 223
Q ss_pred chHHHHHHHHHhhhccccC-CcEEEEEEcCCCCCCChhhcCCCccceEEEccC
Q 003807 472 HTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILDPALTRPGRFDRHIVVPN 523 (794)
Q Consensus 472 ~~~~~LnqLL~eLDg~~~~-~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~l 523 (794)
.....+++|+..++..... .+++||++||.++.++++++| +||+..+++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4567888999999987665 569999999999999999998 99999999874
No 40
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4e-21 Score=212.59 Aligned_cols=182 Identities=28% Similarity=0.408 Sum_probs=152.5
Q ss_pred CCCCCCCcccccCCHHHHHHHHH-HHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVE-VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~e-iV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
+-..+.+|+.|+-..+.|+++.+ +.+|++..+-|.+.|...-+|.|||||||||||++..|+|+.++..++-++.++..
T Consensus 193 ~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~ 272 (457)
T KOG0743|consen 193 GFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK 272 (457)
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc
Confidence 34455899999999999998877 66778999999999999999999999999999999999999999999888776653
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc--------cchHHHHHHHHHhhhccccCC--cEEEEEE
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE--------GHTKKTLHQLLVEMDGFEQNE--GIILMAA 498 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~--------~~~~~~LnqLL~eLDg~~~~~--~VIVIaA 498 (794)
. ... ++.++..+... +||+|++||+-...++... ....-++..||+.+||+...+ --|||.|
T Consensus 273 ~-----n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 273 L-----DSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred C-----cHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 3 223 77777766554 6999999998754332111 123468999999999997766 5788899
Q ss_pred cCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003807 499 TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 499 TN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~ 539 (794)
||+++.|||||+||||.|.+|+++.-+...-+.++..|+..
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999864
No 41
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=3.9e-20 Score=198.89 Aligned_cols=177 Identities=19% Similarity=0.280 Sum_probs=142.8
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCC---ceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCcc
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP---KGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSE 426 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~P---kgVLL~GPPGTGKT~LArAIA~ea-------g~pfi~is~se 426 (794)
+++++|++++|+++.+++.++..+..+...|...| .++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 34899999999999999988777776777776554 358999999999999999999875 23699999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC---
Q 003807 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--- 503 (794)
Q Consensus 427 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~--- 503 (794)
+...|.|..+..++.+|+.+. ++||||||+|.+...++. .......++.|+..|+.. ..+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 999999988888888888764 369999999999654322 223467788888888853 35577888776322
Q ss_pred --CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC
Q 003807 504 --ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP 541 (794)
Q Consensus 504 --~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~ 541 (794)
.++|+|.+ ||+.+|.|++|+.+++.+|++.++++..
T Consensus 176 ~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 176 FYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred HHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 34689998 9999999999999999999999997653
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=6.5e-20 Score=193.97 Aligned_cols=177 Identities=22% Similarity=0.336 Sum_probs=140.4
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCC---ceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCc
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP---KGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGS 425 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~P---kgVLL~GPPGTGKT~LArAIA~ea-------g~pfi~is~s 425 (794)
.+++++|++++|+.+++++.+..........|.+.+ .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 478899999999999999998766555555565533 478999999999999999999864 2478899999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC--
Q 003807 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD-- 503 (794)
Q Consensus 426 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~-- 503 (794)
++...++|.....++++|+.+. ++||||||+|.|.... ........++.|+..|+.. ...+++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~--~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG--EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMD 156 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC--ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhH
Confidence 9999999999999999998875 4699999999996421 1123456788899888864 34456665554322
Q ss_pred ---CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC
Q 003807 504 ---ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP 541 (794)
Q Consensus 504 ---~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~ 541 (794)
.++|++.+ ||+..|.|+.++.+++.+|++.++....
T Consensus 157 ~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 157 YFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 36889988 9999999999999999999999987653
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.82 E-value=1.1e-19 Score=194.95 Aligned_cols=177 Identities=20% Similarity=0.292 Sum_probs=144.6
Q ss_pred cc-cccCCHHHHHHHHHHHHHhcCchhhhhcCCCC---CceEEEEcCCCCcHHHHHHHHHHhcC-------CCEEEEeCc
Q 003807 357 FK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL---PKGILLTGAPGTGKTLLAKAIAGEAG-------VPFFYRAGS 425 (794)
Q Consensus 357 Fd-DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~---PkgVLL~GPPGTGKT~LArAIA~eag-------~pfi~is~s 425 (794)
++ +++|++++|+++.+++.++..++.+...|... ..++||+||||||||++|+++|..+. .+|++++++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 44 69999999999999999988888888788664 34899999999999999999988762 379999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC--C
Q 003807 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP--D 503 (794)
Q Consensus 426 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p--~ 503 (794)
++...+.|.+...++.+|+.+.. ++|||||+|.+.+.+.. .......++.|+..|+.. ..+++||++++.. +
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMD 173 (284)
T ss_pred HHhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHH
Confidence 99888999888888899988743 69999999999643321 223456778888888853 4567888887643 2
Q ss_pred ---CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC
Q 003807 504 ---ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP 541 (794)
Q Consensus 504 ---~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~ 541 (794)
.++|+|.+ ||+..|.||+++.+++.+|++.++++..
T Consensus 174 ~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 174 SFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred HHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 25899998 9999999999999999999999998753
No 44
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.79 E-value=9.3e-19 Score=202.64 Aligned_cols=258 Identities=20% Similarity=0.304 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccCCHHHHHHHHHHHHHhc
Q 003807 299 STILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLK 378 (794)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk 378 (794)
..++|.+++|+||+...+..+................-..++...+.+++.....+.+|++++|+++.++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~--- 82 (531)
T TIGR02902 6 VQIIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC--- 82 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh---
Confidence 34567788888887666543211100000000000001112223345566667778899999999999888865321
Q ss_pred CchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeCcch-------hhhhhhhhhH----
Q 003807 379 NPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEF-------EEMFVGVGAR---- 437 (794)
Q Consensus 379 ~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~is~se~-------~e~~vG~~~~---- 437 (794)
...+.++||+||||||||++|++++..+ +.+|+.++|... .+...+....
T Consensus 83 ---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~ 153 (531)
T TIGR02902 83 ---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQ 153 (531)
T ss_pred ---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhc
Confidence 1234589999999999999999998753 368999998631 1111111000
Q ss_pred ------------HHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc-----------------
Q 003807 438 ------------RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------- 488 (794)
Q Consensus 438 ------------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~----------------- 488 (794)
.....+..+ ...+|||||||.+.. ..++.||..|+...
T Consensus 154 ~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~----------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~ 220 (531)
T TIGR02902 154 GAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHP----------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPS 220 (531)
T ss_pred cccccccCCcccccCchhhcc---CCcEEEEechhhCCH----------HHHHHHHHHHHhCeeeeccccccccCccccc
Confidence 000112222 236999999999943 45556665553210
Q ss_pred ---------cCCc-EEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHH-----
Q 003807 489 ---------QNEG-IILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIA----- 552 (794)
Q Consensus 489 ---------~~~~-VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IA----- 552 (794)
.... .+|++|||.|+.+++++++ |+ ..+.+++++.+++.+|++..+++.... ++..++.|+
T Consensus 221 ~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~n 297 (531)
T TIGR02902 221 HIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASN 297 (531)
T ss_pred chhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhhh
Confidence 0112 3455667789999999998 77 467899999999999999999876543 222233343
Q ss_pred -HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 003807 553 -RDLANLVNIAAIKAAVDGGEKLTATELEFAKD 584 (794)
Q Consensus 553 -rDL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ 584 (794)
+++.|+++.|+..|..+++..|+.+|+++++.
T Consensus 298 ~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 298 GREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 38899999999888888888999999999975
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=2e-17 Score=180.59 Aligned_cols=208 Identities=25% Similarity=0.301 Sum_probs=152.0
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
..+.+|+|++|+++.++.+..++...+.. ...+.++||+||||||||++|+++|++++..+..+++..+..
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-- 89 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-- 89 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC--
Confidence 34568999999999999998888654332 235668999999999999999999999999988877654421
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc----------------cCCcEEE
Q 003807 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGIIL 495 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~----------------~~~~VIV 495 (794)
...+..++... ..++||||||||.+... ..+. +...|+.+. .-.++.+
T Consensus 90 ----~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 90 ----PGDLAAILTNL--EEGDVLFIDEIHRLSPV-------VEEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred ----hHHHHHHHHhc--ccCCEEEEecHhhcchH-------HHHH---HHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 22334444433 34679999999999532 1222 333333221 1134788
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHH-------HHHHHHHHHHHHHH
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIAR-------DLANLVNIAAIKAA 567 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~-dvdl~~IAr-------DL~nlvn~Aal~Aa 567 (794)
|++||++..++++|++ ||...+.++.|+.+++.+|++..+....+.- +..+..|++ .+.++++.+...+.
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~ 231 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQ 231 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 9999999999999987 9999999999999999999999887654432 222455554 56677777766676
Q ss_pred HhCCCCCcHHHHHHHHHHH
Q 003807 568 VDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 568 ~~~~~~It~~dl~~Ai~ri 586 (794)
.++...|+.+++..+++.+
T Consensus 232 ~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 232 VKGDGVITKEIADKALDML 250 (328)
T ss_pred HcCCCCCCHHHHHHHHHHh
Confidence 6667789999999998764
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.77 E-value=2.3e-17 Score=177.22 Aligned_cols=203 Identities=24% Similarity=0.264 Sum_probs=145.6
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhh
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVG 435 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~ 435 (794)
+|+|++|+++.++.|..++...+.. ...+.+++|+||||||||++|+++|++++.++..+++.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 7999999999999998877643322 234568999999999999999999999999887766543321
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc----------------cCCcEEEEEEc
Q 003807 436 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGIILMAAT 499 (794)
Q Consensus 436 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~----------------~~~~VIVIaAT 499 (794)
...+...+... ..+.+|||||+|.+... ....|+..|+... ...++++|++|
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 11222333322 34679999999999542 2223333333222 11347899999
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCC
Q 003807 500 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGG 571 (794)
Q Consensus 500 N~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~ 571 (794)
|++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..|++ .+.++++.+...|...+.
T Consensus 137 ~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~ 214 (305)
T TIGR00635 137 TRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQ 214 (305)
T ss_pred CCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCC
Confidence 999999999988 998899999999999999999888754432 1222444554 556777777666666666
Q ss_pred CCCcHHHHHHHHHH
Q 003807 572 EKLTATELEFAKDR 585 (794)
Q Consensus 572 ~~It~~dl~~Ai~r 585 (794)
..|+.+++..+++.
T Consensus 215 ~~it~~~v~~~l~~ 228 (305)
T TIGR00635 215 KIINRDIALKALEM 228 (305)
T ss_pred CCcCHHHHHHHHHH
Confidence 77999999988877
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.77 E-value=1.6e-17 Score=171.54 Aligned_cols=163 Identities=26% Similarity=0.336 Sum_probs=111.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~v 432 (794)
.+.+|+|++|+++++..++-+++..+.. .....++|||||||+|||+||+.||++++++|...++..+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 4569999999999999998887765432 122348999999999999999999999999999998865432
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc----------------CCcEEEE
Q 003807 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ----------------NEGIILM 496 (794)
Q Consensus 433 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~----------------~~~VIVI 496 (794)
...+..++..... ..||||||||.+.. .....|+..|+.+.- -.++.+|
T Consensus 89 ---~~dl~~il~~l~~--~~ILFIDEIHRlnk----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 89 ---AGDLAAILTNLKE--GDILFIDEIHRLNK----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ---CHHHHHHHHT--T--T-EEEECTCCC--H----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ---HHHHHHHHHhcCC--CcEEEEechhhccH----------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 2233444444433 46999999999943 445566667765421 1247899
Q ss_pred EEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCC
Q 003807 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPL 542 (794)
Q Consensus 497 aATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l 542 (794)
+||++...|.+.|+. ||.-+..+..++.++..+|++...+...+
T Consensus 154 gATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i 197 (233)
T PF05496_consen 154 GATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNI 197 (233)
T ss_dssp EEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-
T ss_pred eeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCC
Confidence 999999999999987 99999999999999999999987765543
No 48
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.6e-18 Score=185.71 Aligned_cols=178 Identities=28% Similarity=0.430 Sum_probs=143.9
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhh
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGV 434 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~ 434 (794)
..|++|+-....+..++.+...-.+... ...+-++||||||||||||++||-||...|..+-.+.+.+..-. -.+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~q 426 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQ 426 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chH
Confidence 3599999999999999888776655544 33455799999999999999999999999999999988886432 233
Q ss_pred hhHHHHHHHHHHHhCC-CeEEEEcCccccccccccc--ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcC
Q 003807 435 GARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR 511 (794)
Q Consensus 435 ~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~--~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlR 511 (794)
+...+..+|+-+++.. .-+|||||.|++...|+.. +...+..+|.||-.-- .+...++++.+||+|..+|.|+..
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D 504 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND 504 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh
Confidence 4567889999998754 4589999999998777542 3345678888884322 244568888999999999999987
Q ss_pred CCccceEEEccCCCHHHHHHHHHHHhccCC
Q 003807 512 PGRFDRHIVVPNPDVRGRQEILELYLQDKP 541 (794)
Q Consensus 512 pGRFdr~I~V~lPd~~eR~eILk~~l~~~~ 541 (794)
|||.+|+||+|..++|..+|..|+.+..
T Consensus 505 --Ride~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 505 --RIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred --hhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997654
No 49
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=3.9e-17 Score=195.76 Aligned_cols=215 Identities=19% Similarity=0.280 Sum_probs=156.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 422 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~i 422 (794)
.+.++++++|.++....+.+++. . +...+++|+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~---~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC---R---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 34579999999988776544442 2 223589999999999999999999987 6778899
Q ss_pred eCcchh--hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 423 AGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 423 s~se~~--e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
+++.+. ..|.|+.+++++.+|+.+++..|+||||||||.+.+.....++ .....+.|+..+. +..+.+|++||
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~-~~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG-SMDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc-cHHHHHHHHHHHh----CCCeEEEEecC
Confidence 888876 4688999999999999998888999999999999765432221 1223344444443 46789999999
Q ss_pred CCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-----CcccHHHHHH-------------HHHH
Q 003807 501 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-----DDVDVKAIAR-------------DLAN 557 (794)
Q Consensus 501 ~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-----~dvdl~~IAr-------------DL~n 557 (794)
..+ .+|++|.| ||+ .|.|+.|+.+++.+||+......... .+..+..++. ....
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 643 57999999 996 79999999999999999766542111 2222333333 2345
Q ss_pred HHHHHHHHHHHh----CCCCCcHHHHHHHHHHHh
Q 003807 558 LVNIAAIKAAVD----GGEKLTATELEFAKDRIL 587 (794)
Q Consensus 558 lvn~Aal~Aa~~----~~~~It~~dl~~Ai~ri~ 587 (794)
++.+|+.....+ ....|+.+|+..++.+..
T Consensus 397 lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 397 VIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 666665443322 234699999999998753
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=8.9e-17 Score=193.79 Aligned_cols=163 Identities=29% Similarity=0.401 Sum_probs=124.6
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh---------h
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE---------E 429 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~---------e 429 (794)
+++|++++|+.+.+.+...+.. +......+||+||||||||++|+++|+.++.+|+.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 4899999999998876543211 111223799999999999999999999999999999876542 2
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhc-----cc--------cCCcEEEE
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FE--------QNEGIILM 496 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg-----~~--------~~~~VIVI 496 (794)
.|.|.....+.+.|..+....| ||||||||.+.+... +. ..+.|+..||. |. ...++++|
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~---~~---~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR---GD---PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC---CC---HHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 4667777788888888876666 899999999986321 11 23445555442 11 12468999
Q ss_pred EEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 497 aATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
+|||.++.++++|++ ||+ .|.|+.|+.+++.+|++.|+
T Consensus 468 ~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 999999999999998 994 78999999999999998876
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.72 E-value=5.4e-16 Score=169.84 Aligned_cols=201 Identities=29% Similarity=0.389 Sum_probs=137.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~v 432 (794)
.+.+|+|++|++....+-.-+-..+. .+.++ +++||||||||||+||+.||+..+.+|..+|.-
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~--------~~~l~-SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------- 82 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE--------AGHLH-SMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------- 82 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh--------cCCCc-eeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-------
Confidence 34689999999987533222222222 22333 799999999999999999999999999999873
Q ss_pred hhhhHHHHHHHHHHHhC----CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEc-CCC-CCCC
Q 003807 433 GVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT-NLP-DILD 506 (794)
Q Consensus 433 G~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaAT-N~p-~~LD 506 (794)
-.+.+.++.+++.|++. ...|||||||+.+.. ..+..||-.++ +..|++|||| .+| -.|.
T Consensus 83 ~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----------~QQD~lLp~vE----~G~iilIGATTENPsF~ln 148 (436)
T COG2256 83 TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK----------AQQDALLPHVE----NGTIILIGATTENPSFELN 148 (436)
T ss_pred cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----------hhhhhhhhhhc----CCeEEEEeccCCCCCeeec
Confidence 33567899999999653 347999999999944 34455676665 5667888766 344 4789
Q ss_pred hhhcCCCccceEEEccCCCHHHHHHHHHHHhccC--CCC------CcccHHHHHH----HHHHHHHHHHHHHHHhC-CCC
Q 003807 507 PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK--PLA------DDVDVKAIAR----DLANLVNIAAIKAAVDG-GEK 573 (794)
Q Consensus 507 ~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~--~l~------~dvdl~~IAr----DL~nlvn~Aal~Aa~~~-~~~ 573 (794)
+||++ |. +++.+.+.+.++..++++..+... .+. ++.....++. |.+.++|..-+.+.... ...
T Consensus 149 ~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~ 225 (436)
T COG2256 149 PALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEV 225 (436)
T ss_pred HHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcc
Confidence 99998 54 678999999999999998844322 222 1222344444 77766665543333221 123
Q ss_pred CcHHHHHHHHHHH
Q 003807 574 LTATELEFAKDRI 586 (794)
Q Consensus 574 It~~dl~~Ai~ri 586 (794)
++.+++++.+.+.
T Consensus 226 ~~~~~l~~~l~~~ 238 (436)
T COG2256 226 LILELLEEILQRR 238 (436)
T ss_pred cCHHHHHHHHhhh
Confidence 4477777777654
No 52
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=3.4e-16 Score=164.92 Aligned_cols=209 Identities=24% Similarity=0.311 Sum_probs=158.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~v 432 (794)
.+.+|+|.+|++++|+.|+-++..-+.. .....++||+||||.|||+||..||+|+|+.+-..++..+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 4568999999999999998888865543 234568999999999999999999999999999998877643
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--------c--------CCcEEEE
Q 003807 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------Q--------NEGIILM 496 (794)
Q Consensus 433 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--------~--------~~~VIVI 496 (794)
+..+-.++.....+ +|+||||||++.+. +-.-|.-.|+.|. + -..+.+|
T Consensus 91 ---~gDlaaiLt~Le~~--DVLFIDEIHrl~~~----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 91 ---PGDLAAILTNLEEG--DVLFIDEIHRLSPA----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred ---hhhHHHHHhcCCcC--CeEEEehhhhcChh----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 23344444444433 69999999999652 2223444555442 1 1247899
Q ss_pred EEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH------HH-HHHHHHHHHHHHH
Q 003807 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR------DL-ANLVNIAAIKAAV 568 (794)
Q Consensus 497 aATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr------DL-~nlvn~Aal~Aa~ 568 (794)
+||.+...|...|+. ||....++..++.++..+|+....+...+. .+.....||+ .| ..++++..-.|..
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQV 233 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 999999999999987 999999999999999999999987665544 2233455666 33 3567777777888
Q ss_pred hCCCCCcHHHHHHHHHHHhc
Q 003807 569 DGGEKLTATELEFAKDRILM 588 (794)
Q Consensus 569 ~~~~~It~~dl~~Ai~ri~~ 588 (794)
++...|+.+-...|+.....
T Consensus 234 ~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 234 KGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred hcCCcccHHHHHHHHHHhCc
Confidence 88899999888888887643
No 53
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.70 E-value=2.3e-16 Score=188.65 Aligned_cols=213 Identities=19% Similarity=0.282 Sum_probs=152.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeC
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAG 424 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~is~ 424 (794)
-+++.++|.++....+.+++. . +.+.++||+||||||||++|+++|... +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~---r---------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHh---c---------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 468899999998777665554 2 123478999999999999999999864 344455544
Q ss_pred cchh--hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 425 SEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 425 se~~--e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
..+. ..|.|..+.+++.+|+.+....++||||||||.+.+.+....+ .....|.|...+ .+..+.+|++||.+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g-~~d~~nlLkp~L----~~g~i~vIgATt~~ 325 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-QVDAANLIKPLL----SSGKIRVIGSTTYQ 325 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc-HHHHHHHHHHHH----hCCCeEEEecCChH
Confidence 4443 4577888899999999998888899999999999775532111 122223332222 35679999999987
Q ss_pred C-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH------------------HHHHHH
Q 003807 503 D-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR------------------DLANLV 559 (794)
Q Consensus 503 ~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr------------------DL~nlv 559 (794)
+ ..|++|.| ||+ .|.|+.|+.+++.+||+.+........++++...|- ....++
T Consensus 326 E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidll 402 (758)
T PRK11034 326 EFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_pred HHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHH
Confidence 5 57999999 995 799999999999999998776655444444322221 455778
Q ss_pred HHHHHHHH----HhCCCCCcHHHHHHHHHHHh
Q 003807 560 NIAAIKAA----VDGGEKLTATELEFAKDRIL 587 (794)
Q Consensus 560 n~Aal~Aa----~~~~~~It~~dl~~Ai~ri~ 587 (794)
.+|+.... ......|+.+|+..++.+..
T Consensus 403 dea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 403 DEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 87765432 22345689999998887754
No 54
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8.6e-16 Score=175.53 Aligned_cols=200 Identities=19% Similarity=0.248 Sum_probs=141.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--------------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------------- 417 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~-------------- 417 (794)
.++.+|+||+|++.+++.|...+. ..++|.++||+||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 345699999999999888877655 3457778999999999999999999998865
Q ss_pred ----------CEEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHh
Q 003807 418 ----------PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (794)
Q Consensus 418 ----------pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e 483 (794)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+. ...++.|+..
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt----------~~a~~~LLk~ 140 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT----------KEAFNALLKT 140 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH----------HHHHHHHHHH
Confidence 233343321 1223456666555542 234699999999994 3456788888
Q ss_pred hhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHH
Q 003807 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANL 558 (794)
Q Consensus 484 LDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nl 558 (794)
++.. ...+++|++|+.+..+++++.+ |+ ..+.|.+|+..+...+++..+...+.. ++..+..|++ |++.+
T Consensus 141 LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~a 215 (472)
T PRK14962 141 LEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDA 215 (472)
T ss_pred HHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHH
Confidence 8753 3457777777788899999998 76 589999999999999999888654432 2334566665 55555
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHH
Q 003807 559 VNIAAIKAAVDGGEKLTATELEFAKD 584 (794)
Q Consensus 559 vn~Aal~Aa~~~~~~It~~dl~~Ai~ 584 (794)
++.....+...+ ..||.+++..++.
T Consensus 216 ln~Le~l~~~~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 216 LTMLEQVWKFSE-GKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHc
Confidence 555433332222 3599999987764
No 55
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5e-17 Score=173.16 Aligned_cols=181 Identities=23% Similarity=0.326 Sum_probs=145.7
Q ss_pred cccccCCHHHHHHHHHHHHH-hcCchhhhh-cCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---------CCEEEEeCc
Q 003807 357 FKDVKGCDDAKQELVEVVEY-LKNPSKFTR-LGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGS 425 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~-Lk~p~~~~~-lG~~~PkgVLL~GPPGTGKT~LArAIA~eag---------~pfi~is~s 425 (794)
|+.++--...|++|...+.. +.-.++-.. --....+-+||+||||||||+|+||+|..+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 77777778889888776554 322222100 0122346699999999999999999999873 357899999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhC---CC--eEEEEcCccccccccccc-----ccchHHHHHHHHHhhhccccCCcEEE
Q 003807 426 EFEEMFVGVGARRVRSLFQAAKKK---AP--CIIFIDEIDAVGSTRKQW-----EGHTKKTLHQLLVEMDGFEQNEGIIL 495 (794)
Q Consensus 426 e~~e~~vG~~~~~vr~lF~~Ar~~---aP--~ILfIDEIDaL~~~r~~~-----~~~~~~~LnqLL~eLDg~~~~~~VIV 495 (794)
.+.++|.+++.+.+..+|++.... .. ..++|||+++++..|... ....-+++|.+|.+||.++...+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999998652 22 256799999998777321 23346899999999999999999999
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~ 539 (794)
++|+|..+.||.|+.. |-|-+.++++|+...|.+|++..+..
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999987754
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=9.7e-16 Score=173.91 Aligned_cols=197 Identities=19% Similarity=0.252 Sum_probs=142.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------ 418 (794)
...+.+|+||+|++.+...|...+. ..+++..+||+||||||||++|+++|+.+++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 4456799999999999988877765 34567789999999999999999999998763
Q ss_pred ------------EEEEeCcchhhhhhhhhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccccchHHHHHHHHH
Q 003807 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (794)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~ 482 (794)
++.+++. ...+...+|++.+.+. .+...|+||||+|.+. ...+|.||.
T Consensus 80 sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls----------~~A~NALLK 143 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT----------DQSFNALLK 143 (484)
T ss_pred HHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC----------HHHHHHHHH
Confidence 1222211 1223445666655544 2345699999999994 467889999
Q ss_pred hhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------H
Q 003807 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------D 554 (794)
Q Consensus 483 eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------D 554 (794)
.|+. +...+++|.+|+.++.|.+++++ |+ .++.|..++..+..+.++..+...++. ++..+..||+ +
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHH
Confidence 9884 45678889999999999999998 76 568899999999989998888765443 3444666766 4
Q ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 555 LANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 555 L~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
.-+++.++... ....||.+++...+
T Consensus 219 AL~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 219 MLSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 44555544322 23468888876554
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-15 Score=174.84 Aligned_cols=210 Identities=44% Similarity=0.638 Sum_probs=186.4
Q ss_pred hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEE
Q 003807 377 LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFI 456 (794)
Q Consensus 377 Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfI 456 (794)
+..+..+..++..+|++++++||||||||++++++|.+ +..++.+++.+....+.|......+.+|..++...|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567788889999999999999999999999999999 76668889999999999999999999999999999999999
Q ss_pred cCccccccccccc-ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHH
Q 003807 457 DEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILEL 535 (794)
Q Consensus 457 DEIDaL~~~r~~~-~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~ 535 (794)
||+|.+.+.+... .........+++..++++.... +++++.||.+..+|+++.+||||++.+.+..|+...+.+|+..
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~ 161 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQI 161 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHH
Confidence 9999999888762 3345788899999999998444 9999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhC------CCCCcHHHHHHHHHHHhc
Q 003807 536 YLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDG------GEKLTATELEFAKDRILM 588 (794)
Q Consensus 536 ~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~------~~~It~~dl~~Ai~ri~~ 588 (794)
+........+.+...++. ++..++..+...+..+. ...++.+++..+++++..
T Consensus 162 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 162 HTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 988887777888888887 89999999988888774 356889999999998754
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=99.68 E-value=1.5e-15 Score=174.18 Aligned_cols=207 Identities=25% Similarity=0.285 Sum_probs=148.4
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
|.....+.+|+||+|++++++.|..++....+ +.+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 45566778999999999999999888864331 3347799999999999999999999999999999999876
Q ss_pred hhhhhhhhhHHHHHHHHHHHh------CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCC
Q 003807 428 EEMFVGVGARRVRSLFQAAKK------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~ 501 (794)
... ..++.+...+.. ..+.+|+|||+|.+..+. ....++.|+..++. .+..+|.++|.
T Consensus 76 r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~------d~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 76 RTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE------DRGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred ccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc------chhHHHHHHHHHHc----CCCCEEEeccC
Confidence 431 123333322221 246799999999996521 22445666666652 23345667888
Q ss_pred CCCCCh-hhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHHHHHhCCCCCc
Q 003807 502 PDILDP-ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIKAAVDGGEKLT 575 (794)
Q Consensus 502 p~~LD~-ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~~~~It 575 (794)
+..+++ .|++ ....|.|+.|+..++..+++..+...++. ++..+..|++ |++.+++.....+ .+...|+
T Consensus 140 ~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a--~~~~~it 214 (482)
T PRK04195 140 PYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIA--EGYGKLT 214 (482)
T ss_pred ccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh--cCCCCCc
Confidence 888877 5554 34789999999999999999988765543 2334666666 8888888766533 3556788
Q ss_pred HHHHHHHH
Q 003807 576 ATELEFAK 583 (794)
Q Consensus 576 ~~dl~~Ai 583 (794)
.+++....
T Consensus 215 ~~~v~~~~ 222 (482)
T PRK04195 215 LEDVKTLG 222 (482)
T ss_pred HHHHHHhh
Confidence 88886543
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.6e-15 Score=166.42 Aligned_cols=206 Identities=16% Similarity=0.217 Sum_probs=139.2
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE--eC----
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR--AG---- 424 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i--s~---- 424 (794)
...+.+|+||+|++.+++.|+..+. .++.|..+||+||||||||++|+++|+++++..... .|
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3455799999999999998877665 346777899999999999999999999986531100 01
Q ss_pred --c--------chhhh--hhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc
Q 003807 425 --S--------EFEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (794)
Q Consensus 425 --s--------e~~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~ 488 (794)
. ++.+. ........++++.+.+.. ....|++|||+|.+. ...++.||..++..
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~----------~~a~naLLk~lEe~- 146 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS----------RHSFNALLKTLEEP- 146 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC----------HHHHHHHHHHHhcC-
Confidence 0 11100 001233456666665432 234699999999983 35677888888853
Q ss_pred cCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHH
Q 003807 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAA 563 (794)
Q Consensus 489 ~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aa 563 (794)
...+.+|.+|+.++.+.+.+.+ |+ ..++|++|+.++..++++..++..+.. ++..+..+++ +++.+++...
T Consensus 147 -~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~ 222 (363)
T PRK14961 147 -PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLE 222 (363)
T ss_pred -CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456667777878889989887 66 678999999999999999888765432 2334455555 4444444433
Q ss_pred HHHHHhCCCCCcHHHHHHHH
Q 003807 564 IKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 564 l~Aa~~~~~~It~~dl~~Ai 583 (794)
..+.. +...|+.+++..++
T Consensus 223 ~~~~~-~~~~It~~~v~~~l 241 (363)
T PRK14961 223 HAINL-GKGNINIKNVTDML 241 (363)
T ss_pred HHHHh-cCCCCCHHHHHHHH
Confidence 22222 45778988887665
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=9.7e-16 Score=178.00 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=140.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------ 418 (794)
+..+.+|+||+|++.+++.|++.+. ..+++..+||+||+|||||++|+.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~-----------~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALE-----------QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 3455699999999999999988776 35677889999999999999999999999761
Q ss_pred EEEE-eCc--------chhhh--hhhhhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccccchHHHHHHHHHh
Q 003807 419 FFYR-AGS--------EFEEM--FVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (794)
Q Consensus 419 fi~i-s~s--------e~~e~--~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e 483 (794)
+-.+ +|. ++.+. ....+...+|++.+... .+...|+||||+|.|. ....|.||+.
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls----------~~AaNALLKT 147 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT----------NHAFNAMLKT 147 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC----------HHHHHHHHHh
Confidence 1111 010 11110 01123456677766653 2345799999999993 3678899999
Q ss_pred hhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHH-------HH
Q 003807 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVKAIAR-------DL 555 (794)
Q Consensus 484 LDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~d-vdl~~IAr-------DL 555 (794)
|+. +..++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+....+..+ ..+..|++ +.
T Consensus 148 LEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 148 LEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 985 45667888889999999999998 76 78999999999999999888866544322 23455555 44
Q ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHH
Q 003807 556 ANLVNIAAIKAAVDGGEKLTATELEF 581 (794)
Q Consensus 556 ~nlvn~Aal~Aa~~~~~~It~~dl~~ 581 (794)
.+++.++.. .+...|+.+++..
T Consensus 223 LsLLdQaia----~~~~~It~~~V~~ 244 (700)
T PRK12323 223 LSLTDQAIA----YSAGNVSEEAVRG 244 (700)
T ss_pred HHHHHHHHH----hccCCcCHHHHHH
Confidence 455554432 2334566655543
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=1.7e-15 Score=177.84 Aligned_cols=195 Identities=19% Similarity=0.289 Sum_probs=140.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------ 418 (794)
+..+.+|+||+|++.+++.|+..+. .++++..+||+||+|||||++|+++|+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 4456799999999999999987765 45678889999999999999999999998763
Q ss_pred ------------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHH
Q 003807 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (794)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~ 482 (794)
++.++.+ ...+...++++++.+.. ....|+||||+|.|. ....|.||+
T Consensus 78 sCr~I~~G~h~DviEIDAa------s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT----------~~A~NALLK 141 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAA------SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT----------NHAFNAMLK 141 (830)
T ss_pred HHHHHhcCCCceEEEeccc------ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC----------HHHHHHHHH
Confidence 1222211 12234557777776542 235799999999993 356788999
Q ss_pred hhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------H
Q 003807 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------D 554 (794)
Q Consensus 483 eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------D 554 (794)
.|+. ...++++|.+||.++.|.+.|++ |+ .++.|..++.++..+.|+..+...++. ++..+..|++ +
T Consensus 142 tLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRd 216 (830)
T PRK07003 142 TLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRD 216 (830)
T ss_pred HHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 8885 34568888899999999999988 76 789999999999999999888765543 3344556665 4
Q ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHH
Q 003807 555 LANLVNIAAIKAAVDGGEKLTATELEF 581 (794)
Q Consensus 555 L~nlvn~Aal~Aa~~~~~~It~~dl~~ 581 (794)
..+++.++... +...|+.+++..
T Consensus 217 ALsLLdQAia~----~~~~It~~~V~~ 239 (830)
T PRK07003 217 ALSLTDQAIAY----SANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHHh----ccCCcCHHHHHH
Confidence 44554444422 234566655543
No 62
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=7.6e-15 Score=165.35 Aligned_cols=197 Identities=29% Similarity=0.400 Sum_probs=136.3
Q ss_pred CCCCcccccCCHHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 353 NVKTFKDVKGCDDAKQE---LVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~e---L~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
.+.+|+|++|++.+... |..++. . .. +.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~---~--------~~-~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIE---A--------GR-LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHH---c--------CC-CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 44689999999998666 655553 1 22 3379999999999999999999999999999987643
Q ss_pred hhhhhhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC--CCC
Q 003807 430 MFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN--LPD 503 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN--~p~ 503 (794)
+...++.+++.+. .....||||||+|.+.. ...+.|+..++. ..+++|++|+ ...
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~----------~~q~~LL~~le~----~~iilI~att~n~~~ 133 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK----------AQQDALLPHVED----GTITLIGATTENPSF 133 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH----------HHHHHHHHHhhc----CcEEEEEeCCCChhh
Confidence 2344566666653 23567999999999843 345566666653 4566776653 334
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC--C--CCcccHHHHHH----HHHHHHHHHHHHHHHhCCCCCc
Q 003807 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP--L--ADDVDVKAIAR----DLANLVNIAAIKAAVDGGEKLT 575 (794)
Q Consensus 504 ~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~--l--~~dvdl~~IAr----DL~nlvn~Aal~Aa~~~~~~It 575 (794)
.+++++++ |+ ..+.+++++.++...+++..+.... + .++..+..+++ |++.+++.....+.. ...|+
T Consensus 134 ~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~--~~~It 208 (413)
T PRK13342 134 EVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG--VDSIT 208 (413)
T ss_pred hccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCCCC
Confidence 78999998 77 7889999999999999998875421 1 11222344444 444444333222222 46799
Q ss_pred HHHHHHHHHHHh
Q 003807 576 ATELEFAKDRIL 587 (794)
Q Consensus 576 ~~dl~~Ai~ri~ 587 (794)
.+++..++....
T Consensus 209 ~~~v~~~~~~~~ 220 (413)
T PRK13342 209 LELLEEALQKRA 220 (413)
T ss_pred HHHHHHHHhhhh
Confidence 999999887643
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=99.65 E-value=4.8e-15 Score=161.41 Aligned_cols=200 Identities=19% Similarity=0.187 Sum_probs=136.7
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CEEEE
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----PFFYR 422 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~-----pfi~i 422 (794)
|.....+.+|+|++|++++++.|+.++. +...| ++||+||||||||++|+++|+++.. .++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~-----------~~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIAR-----------DGNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHh-----------cCCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 4455677899999999999888877655 23344 6999999999999999999999732 35666
Q ss_pred eCcchhhhhhhhhhHHHHHHHHHHH-------hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEE
Q 003807 423 AGSEFEEMFVGVGARRVRSLFQAAK-------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 495 (794)
Q Consensus 423 s~se~~e~~vG~~~~~vr~lF~~Ar-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIV 495 (794)
+.++... ...+++...... ...+.|++|||+|.+.. ...+.|+..|+.+... ..+
T Consensus 71 n~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----------~aq~aL~~~lE~~~~~--t~~ 132 (319)
T PLN03025 71 NASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----------GAQQALRRTMEIYSNT--TRF 132 (319)
T ss_pred ccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH----------HHHHHHHHHHhcccCC--ceE
Confidence 6655422 123333332211 12357999999999943 3456677777654333 345
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHHHHHhC
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIKAAVDG 570 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~ 570 (794)
|.+||.+..+.++|++ |+ ..+.|+.|+.++....++..+++.++. ++..+..++. |++.+++...... .+
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~--~~ 207 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATH--SG 207 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH--hc
Confidence 5678888888889987 65 578999999999999999888765443 2334555555 7777766654322 23
Q ss_pred CCCCcHHHHHHH
Q 003807 571 GEKLTATELEFA 582 (794)
Q Consensus 571 ~~~It~~dl~~A 582 (794)
...|+.+++...
T Consensus 208 ~~~i~~~~v~~~ 219 (319)
T PLN03025 208 FGFVNQENVFKV 219 (319)
T ss_pred CCCCCHHHHHHH
Confidence 456887777543
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.4e-15 Score=173.87 Aligned_cols=199 Identities=19% Similarity=0.274 Sum_probs=141.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 418 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------- 418 (794)
.++.+|+||+|++.+++.|...+. .++++..+||+||||||||++|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 445699999999999999988776 45678889999999999999999999998762
Q ss_pred -----------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHh
Q 003807 419 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (794)
Q Consensus 419 -----------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e 483 (794)
++.+++++ ..+...+|++...+.. +...|++|||+|.|. ....+.|+..
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS----------~~A~NALLKt 141 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS----------THSFNALLKT 141 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC----------HHHHHHHHHH
Confidence 22232221 1234556676665532 345799999999994 3567888888
Q ss_pred hhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHH
Q 003807 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANL 558 (794)
Q Consensus 484 LDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nl 558 (794)
|+. +...+.+|.+|+.+..+.+.+++ |+ .++.|..++.++..+.++..+.+.+.. ++..+..|++ +++.+
T Consensus 142 LEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 142 LEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred Hhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 885 34556777778888888888876 66 688999999999999999888765543 3344666666 45444
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 559 VNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 559 vn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
++..-...+ .+...|+.+++...+
T Consensus 217 LnLLDQaIa-yg~g~IT~edV~~lL 240 (702)
T PRK14960 217 LSLTDQAIA-YGQGAVHHQDVKEML 240 (702)
T ss_pred HHHHHHHHH-hcCCCcCHHHHHHHh
Confidence 444221111 245678888886643
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=5.4e-15 Score=170.03 Aligned_cols=208 Identities=21% Similarity=0.268 Sum_probs=146.8
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE--------
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF-------- 420 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi-------- 420 (794)
.....+.+|+|++|++.+++.|+..+. ..++|.++||+||||||||++|+++|+.+++.--
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 334566799999999999988877654 3567889999999999999999999999876311
Q ss_pred ---E-EeCcchh--------hh--hhhhhhHHHHHHHHHHHhC----CCeEEEEcCcccccccccccccchHHHHHHHHH
Q 003807 421 ---Y-RAGSEFE--------EM--FVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (794)
Q Consensus 421 ---~-is~se~~--------e~--~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~ 482 (794)
. -+|..+. +. ....+...++++++.+... ...|++|||+|.+. ...++.|+.
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls----------~~a~naLLk 150 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS----------KGAFNALLK 150 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC----------HHHHHHHHH
Confidence 0 0111111 00 0122456778888777532 34699999999983 356788888
Q ss_pred hhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------H
Q 003807 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------D 554 (794)
Q Consensus 483 eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------D 554 (794)
.|+. +...+++|.+|+.++.+.+.+++ |+ .++.|..++.++...+++..++..+.. ++..+..|++ +
T Consensus 151 ~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 151 TLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred HHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 8884 45567777788888899999987 66 678999999999999999999766543 2233556665 5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 555 LANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 555 L~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+.++++.+...+..+ ...||.++++..+
T Consensus 226 al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 226 AVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 556666665444221 2468888887654
No 66
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.65 E-value=1.6e-14 Score=158.76 Aligned_cols=212 Identities=24% Similarity=0.320 Sum_probs=145.1
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---------CCEEEEeCcchh
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSEFE 428 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag---------~pfi~is~se~~ 428 (794)
++++|.++..+.|...+..... +..|.+++|+||||||||++++++++++. +++++++|....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 4789999998888777664222 23455899999999999999999988652 578899986542
Q ss_pred hh----------hh--hh-------h-hHHHHHHHHHHH-hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc
Q 003807 429 EM----------FV--GV-------G-ARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (794)
Q Consensus 429 e~----------~v--G~-------~-~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~ 487 (794)
.. .. |. . .+..+.+++... ...+.||+|||+|.+... ....+..|+...+..
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-------~~~~L~~l~~~~~~~ 159 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-------DDDLLYQLSRARSNG 159 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-------CcHHHHhHhcccccc
Confidence 21 10 11 0 122344555443 345789999999999631 124566666542211
Q ss_pred -ccCCcEEEEEEcCCCC---CCChhhcCCCccc-eEEEccCCCHHHHHHHHHHHhccCCCC---CcccHHHHHH------
Q 003807 488 -EQNEGIILMAATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDKPLA---DDVDVKAIAR------ 553 (794)
Q Consensus 488 -~~~~~VIVIaATN~p~---~LD~ALlRpGRFd-r~I~V~lPd~~eR~eILk~~l~~~~l~---~dvdl~~IAr------ 553 (794)
..+.++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.+++..... ++..+..++.
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 237 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEH 237 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhc
Confidence 2336788999999886 57888876 675 679999999999999999988621111 1111222222
Q ss_pred ----HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 554 ----DLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 554 ----DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
.+.+++..|+..|..++...|+.+|++.|.+.+
T Consensus 238 Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 238 GDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 455678888888888888899999999999876
No 67
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.1e-15 Score=172.48 Aligned_cols=196 Identities=16% Similarity=0.231 Sum_probs=140.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------ 418 (794)
...+.+|+||+|++.+++.|...+. ..++|..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~-----------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALD-----------QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 4456799999999999999988775 35677789999999999999999999998763
Q ss_pred ------------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHH
Q 003807 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (794)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~ 482 (794)
++.++++. ..+...+|++.+.+.. +...|++|||+|.+. ....|.||.
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls----------~~a~naLLk 141 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS----------GHSFNALLK 141 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC----------HHHHHHHHH
Confidence 33333221 2234556777665532 334699999999994 356788999
Q ss_pred hhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------H
Q 003807 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------D 554 (794)
Q Consensus 483 eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------D 554 (794)
.|+.. ...+++|.+|+.+..+.+.+++ |+ ..++|..++..+....++..++..+.. ++..+..|++ +
T Consensus 142 ~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 142 TLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRD 216 (509)
T ss_pred HHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHH
Confidence 88853 4457777777888888888887 65 667899899998888888888765543 2334556665 4
Q ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 555 LANLVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 555 L~nlvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
+.+++..+... +...||.+++...
T Consensus 217 al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 217 ALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred HHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 44555444322 4567888887654
No 68
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.64 E-value=4.9e-15 Score=168.59 Aligned_cols=183 Identities=20% Similarity=0.332 Sum_probs=129.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCcchhhhhhhhhhH-HHHHHHHHHHhCCCeEEEEcCccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGST 465 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~se~~e~~vG~~~~-~vr~lF~~Ar~~aP~ILfIDEIDaL~~~ 465 (794)
.+++||||||||||+|++++++++ +..++++++.++...+...... ....+.+..+ .+.+|+|||+|.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 479999999999999999999987 5678999998886655433221 1222222222 4679999999998653
Q ss_pred ccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC---CChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccC
Q 003807 466 RKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI---LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDK 540 (794)
Q Consensus 466 r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~---LD~ALlRpGRFd--r~I~V~lPd~~eR~eILk~~l~~~ 540 (794)
+ .+...++..++........+||+++..|.. +++.+.+ ||. ..+.+.+||.++|.+|++..+...
T Consensus 227 ~--------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 227 E--------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H--------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 2 122334444443333344566766666655 6788887 886 489999999999999999998764
Q ss_pred CCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 003807 541 PLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 587 (794)
Q Consensus 541 ~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~ 587 (794)
++. ++.-++.||+ +|.++++.....+...+ ..||.+.+++++..+.
T Consensus 297 ~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 297 GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 432 3333666665 67778888777766555 5699999999998765
No 69
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.9e-15 Score=172.15 Aligned_cols=224 Identities=27% Similarity=0.397 Sum_probs=169.9
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhh
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVG 435 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~ 435 (794)
.|-...+.+.... +++..+.-+..-...+.+..-.+||+|+||||||++++++|.++|.+++.++|.++...-.+..
T Consensus 399 n~~~~~~~~~~~~---~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~ 475 (953)
T KOG0736|consen 399 NSLSPPGLEAKVL---ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT 475 (953)
T ss_pred ccCCCccchHHHH---HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh
Confidence 3444555565544 3344333222222234445557999999999999999999999999999999999988888888
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccch---HHHHHHHHHhhhccc-cCCcEEEEEEcCCCCCCChhhcC
Q 003807 436 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT---KKTLHQLLVEMDGFE-QNEGIILMAATNLPDILDPALTR 511 (794)
Q Consensus 436 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~---~~~LnqLL~eLDg~~-~~~~VIVIaATN~p~~LD~ALlR 511 (794)
+.++...|..|+...|+|||+-++|.++..++. +.. .+.++.++. .|.+. ...+++||++|+..+.+++.+++
T Consensus 476 etkl~~~f~~a~~~~pavifl~~~dvl~id~dg--ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~ 552 (953)
T KOG0736|consen 476 ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG--GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS 552 (953)
T ss_pred HHHHHHHHHHHhhcCceEEEEeccceeeecCCC--chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH
Confidence 899999999999999999999999999865443 333 334444444 33333 45679999999999999999998
Q ss_pred CCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHH---HHHHHHhC----------
Q 003807 512 PGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIA---AIKAAVDG---------- 570 (794)
Q Consensus 512 pGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~A---al~Aa~~~---------- 570 (794)
-|-..|.++.|+.++|.+||+.|+....+..++....+|+ ++..++..+ +..-..+.
T Consensus 553 --~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~ 630 (953)
T KOG0736|consen 553 --LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEED 630 (953)
T ss_pred --hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcc
Confidence 6667899999999999999999999999999999988887 666665444 21111111
Q ss_pred -------CCCCcHHHHHHHHHHHh
Q 003807 571 -------GEKLTATELEFAKDRIL 587 (794)
Q Consensus 571 -------~~~It~~dl~~Ai~ri~ 587 (794)
...++++|+..+++++.
T Consensus 631 ~~~~~~~~~~l~~edf~kals~~~ 654 (953)
T KOG0736|consen 631 EGELCAAGFLLTEEDFDKALSRLQ 654 (953)
T ss_pred ccccccccceecHHHHHHHHHHHH
Confidence 25789999999998753
No 70
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=3.3e-15 Score=181.42 Aligned_cols=211 Identities=23% Similarity=0.277 Sum_probs=146.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEE
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 421 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~ 421 (794)
-.+.++++++|.++. +..++..|....+ .+++|+||||||||++|+.+|... +..++.
T Consensus 181 ~r~~~ld~~iGr~~e---i~~~i~~l~r~~~---------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDDE---IRQMIDILLRRRQ---------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHHH---HHHHHHHHhcCCc---------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 345689999999986 5555554433222 379999999999999999999976 244777
Q ss_pred EeCcchh--hhhhhhhhHHHHHHHHHHHh-CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 422 RAGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 422 is~se~~--e~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
++.+.+. ..|.|+.+.+++.+|+.++. ..++||||||||.+.+.++... ....-|.|+..+. +..+.+|||
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~n~Lkp~l~----~G~l~~Iga 322 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG--QGDAANLLKPALA----RGELRTIAA 322 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc--cccHHHHhhHHhh----CCCeEEEEe
Confidence 7777665 35788889999999999875 4689999999999987553221 1122233444333 567999999
Q ss_pred cCCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCC-----cccHHHHHH-------------HH
Q 003807 499 TNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-----DVDVKAIAR-------------DL 555 (794)
Q Consensus 499 TN~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~-----dvdl~~IAr-------------DL 555 (794)
|+..+ .+|+||.| || ..|.|+.|+.+++.+||+.+.+...... +..+..++. ..
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 99643 48999999 99 5899999999999999876665432222 222333333 45
Q ss_pred HHHHHHHHHHHHHh-CCCCCcHHHHHHHH
Q 003807 556 ANLVNIAAIKAAVD-GGEKLTATELEFAK 583 (794)
Q Consensus 556 ~nlvn~Aal~Aa~~-~~~~It~~dl~~Ai 583 (794)
..++.+|+...... ....+..++++..+
T Consensus 400 Idlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 400 VSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 57788876655443 34455555554443
No 71
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.64 E-value=1.1e-14 Score=157.77 Aligned_cols=208 Identities=21% Similarity=0.265 Sum_probs=138.1
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEE
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYR 422 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag-----~pfi~i 422 (794)
|.....+.+|++++|++++++.|..++. ....| ++||+||||||||++|+++++++. .+++++
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~-----------~~~~~-~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVD-----------SPNLP-HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHh-----------CCCCc-eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 4445567789999999999988877665 12233 699999999999999999999873 457888
Q ss_pred eCcchhhhh-------------hhh-------hhHHHHHHHHHHHh-----CCCeEEEEcCcccccccccccccchHHHH
Q 003807 423 AGSEFEEMF-------------VGV-------GARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTL 477 (794)
Q Consensus 423 s~se~~e~~-------------vG~-------~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~L 477 (794)
+++++.... .+. ....++.+.+.... ..+.+|+|||+|.+.. ...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~----------~~~ 142 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE----------DAQ 142 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH----------HHH
Confidence 887653211 011 11223333333322 2346999999998843 234
Q ss_pred HHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH---
Q 003807 478 HQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--- 553 (794)
Q Consensus 478 nqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--- 553 (794)
+.|+..++..... ..+|.+++.+..+.+.|.+ |+ ..+.+++|+.++...+++..++...+. ++..+..+++
T Consensus 143 ~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 143 QALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4555556644332 3344455566677777876 55 578999999999999999988766543 3334555555
Q ss_pred -HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 003807 554 -DLANLVNIAAIKAAVDGGEKLTATELEFAKD 584 (794)
Q Consensus 554 -DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ 584 (794)
+++.+++.....+. +...||.+++..++.
T Consensus 218 gdlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 218 GDLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred CCHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 77777776655442 334799998877553
No 72
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.64 E-value=1.1e-14 Score=163.47 Aligned_cols=215 Identities=22% Similarity=0.348 Sum_probs=140.4
Q ss_pred CCCCccc-ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCcc
Q 003807 353 NVKTFKD-VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSE 426 (794)
Q Consensus 353 ~~~tFdD-VvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~se 426 (794)
+..+|++ ++|.+.. .....+..+..++ .....+++||||||||||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n~-~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSNR-LAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcHH-HHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 3458999 5564332 2222222222232 1234579999999999999999999987 67899999988
Q ss_pred hhhhhhhhhh-HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC-
Q 003807 427 FEEMFVGVGA-RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI- 504 (794)
Q Consensus 427 ~~e~~vG~~~-~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~- 504 (794)
+...+..... ..+..+.+..+ .+.+|+|||+|.+.++. .+...++..++....+...+||+++..|..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~--------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE--------RTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH--------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 7655433221 11222222232 25799999999986532 222334443433323344566666666654
Q ss_pred --CChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCC
Q 003807 505 --LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGE 572 (794)
Q Consensus 505 --LD~ALlRpGRFdr--~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~ 572 (794)
+++.+.+ ||.. .+.+++||.++|.+|++..++...+. ++..++.||+ +|.++++.....|...+ .
T Consensus 247 ~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~-~ 323 (405)
T TIGR00362 247 PGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTG-K 323 (405)
T ss_pred hhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-C
Confidence 5677877 8864 79999999999999999998765443 3334566666 67788888777766544 6
Q ss_pred CCcHHHHHHHHHHHhc
Q 003807 573 KLTATELEFAKDRILM 588 (794)
Q Consensus 573 ~It~~dl~~Ai~ri~~ 588 (794)
.||.+.+++++.....
T Consensus 324 ~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 324 PITLELAKEALKDLLR 339 (405)
T ss_pred CCCHHHHHHHHHHhcc
Confidence 7999999998877543
No 73
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.63 E-value=1.1e-14 Score=157.43 Aligned_cols=163 Identities=21% Similarity=0.322 Sum_probs=117.3
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
.|.....+.+|+|++|++++++.+..++. .++.|..+||+||||+|||++|++++++.+.+++.+++++
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 35566777899999999999998887775 2456777888999999999999999999999999999876
Q ss_pred hhhhhhhhhhHHHHHHHHHHH-hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 427 FEEMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 427 ~~e~~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.. .......+........ ...+.+|+|||+|.+... .....|...++.. ..++.+|.+||.+..+
T Consensus 79 -~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~---------~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 79 -CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA---------DAQRHLRSFMEAY--SKNCSFIITANNKNGI 144 (316)
T ss_pred -cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH---------HHHHHHHHHHHhc--CCCceEEEEcCChhhc
Confidence 21 1111122222211111 134689999999988331 2223344445543 3456777899999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
++++++ || ..+.++.|+.+++.++++.++
T Consensus 145 ~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 145 IEPLRS--RC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hHHHHh--hc-eEEEeCCCCHHHHHHHHHHHH
Confidence 999998 77 478999999999998877544
No 74
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.2e-15 Score=168.68 Aligned_cols=225 Identities=24% Similarity=0.311 Sum_probs=164.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGST 465 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag----~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~ 465 (794)
.+.+|||+||+|||||.|+++++++.. +.+.+++|+.+...-.....+.++.+|..+.+++|+||++|++|.+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 445899999999999999999999885 4566889999877666667788999999999999999999999999873
Q ss_pred ccccc---cchHHHHHHHHHh-hhcc-ccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC
Q 003807 466 RKQWE---GHTKKTLHQLLVE-MDGF-EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 540 (794)
Q Consensus 466 r~~~~---~~~~~~LnqLL~e-LDg~-~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~ 540 (794)
.+... +...+.++.+|.. ++-+ +.+..+.+||+.+....|++-|..|++|+.++.++.|+..+|.+||+..+++.
T Consensus 510 s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 510 SSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 32221 2223333444422 2222 34556899999999999999999999999999999999999999999999876
Q ss_pred C---CCCcccHHHHHH--------HHHHHHHHHHHHHHHh----CCCCCcHHHHHHHHHHHhccccccccccchh--hh-
Q 003807 541 P---LADDVDVKAIAR--------DLANLVNIAAIKAAVD----GGEKLTATELEFAKDRILMGTERKTMFISEE--SK- 602 (794)
Q Consensus 541 ~---l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~----~~~~It~~dl~~Ai~ri~~g~~~k~~~ls~e--ek- 602 (794)
. ..+++|+ ++. ||.-++.+|...|.++ +.+.+|.++|..++.....-.-+. ..+... .+
T Consensus 590 ~~~~~~~dLd~--ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~-ik~~k~tgi~w 666 (952)
T KOG0735|consen 590 LSDITMDDLDF--LSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRG-IKLVKSTGIRW 666 (952)
T ss_pred hhhhhhHHHHH--HHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhh-ccccccCCCCc
Confidence 5 2234444 554 9999999998777732 234789999999988754332221 111111 11
Q ss_pred -HHHHHHHhhhHHHhh
Q 003807 603 -KLTAYHESGHAIVAF 617 (794)
Q Consensus 603 -~~~A~HEaGHAlva~ 617 (794)
.+-..||+-.++...
T Consensus 667 ~digg~~~~k~~l~~~ 682 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEV 682 (952)
T ss_pred eecccHHHHHHHHHHH
Confidence 245677777776554
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.2e-14 Score=170.81 Aligned_cols=195 Identities=21% Similarity=0.333 Sum_probs=139.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------------
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------------- 418 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-------------- 418 (794)
.+.+|+||+|++.+++.|...+. .++++..+||+||+|||||++|+++|+.+++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~-----------~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALD-----------LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 45699999999999998887776 35677789999999999999999999998763
Q ss_pred ----------EEEEeCcchhhhhhhhhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccccchHHHHHHHHHhh
Q 003807 419 ----------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 484 (794)
Q Consensus 419 ----------fi~is~se~~e~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eL 484 (794)
++.+++.. ..+...+|++.+.+. .+...|+||||+|.|. ...+|.||+.|
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls----------~~a~NALLKtL 143 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNALLKTL 143 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC----------HHHHHHHHHHH
Confidence 12222211 112345666665543 2345699999999994 46789999999
Q ss_pred hccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHH
Q 003807 485 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLA 556 (794)
Q Consensus 485 Dg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~ 556 (794)
+. +...+++|.+|+.+..|.+.+++ |+ ..+.|..++.++....|+..+....+. ++..+..|++ +..
T Consensus 144 EE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 144 EE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred Hc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 85 45567777788889999999988 75 889999999999999999888655433 2334555665 444
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 557 NLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 557 nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+++.++.. .+...|+.+++...+
T Consensus 219 ~lldqaia----~~~~~it~~~v~~~l 241 (647)
T PRK07994 219 SLTDQAIA----SGNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHH----hcCCCcCHHHHHHHH
Confidence 45444332 233457766665443
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.1e-14 Score=165.48 Aligned_cols=217 Identities=17% Similarity=0.234 Sum_probs=141.1
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCcc
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSE 426 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~se 426 (794)
.+..||++.+..+........+.....++.. ..+++||||||+|||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 3456899977333333333333333333321 3469999999999999999999986 46788999988
Q ss_pred hhhhhhhhhh-HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC-
Q 003807 427 FEEMFVGVGA-RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI- 504 (794)
Q Consensus 427 ~~e~~vG~~~-~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~- 504 (794)
|...+..... ..+.. |.......+.+|+|||++.+.++. .+...++..++.+......+||++.+.|..
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~--------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l 241 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT--------GVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH--------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHH
Confidence 7665433211 12222 333223357899999999885532 122233333333333445567766677765
Q ss_pred --CChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCC
Q 003807 505 --LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGE 572 (794)
Q Consensus 505 --LD~ALlRpGRFd--r~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~ 572 (794)
+++.+.+ ||. ..+.+.+||.+.|.+|++..+....+. ++.-+..||+ +|..+++.....+...+ .
T Consensus 242 ~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~-~ 318 (440)
T PRK14088 242 SEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTG-E 318 (440)
T ss_pred HHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhC-C
Confidence 4566776 664 488999999999999999988754332 2333666666 77778887766666555 6
Q ss_pred CCcHHHHHHHHHHHhc
Q 003807 573 KLTATELEFAKDRILM 588 (794)
Q Consensus 573 ~It~~dl~~Ai~ri~~ 588 (794)
.||.+.+.+++..++.
T Consensus 319 ~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 319 EVDLKEAILLLKDFIK 334 (440)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7999999999987654
No 77
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.2e-14 Score=166.38 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=143.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--------------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------------- 417 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~-------------- 417 (794)
..+.+|+||+|++.+++.|+..+. .+++|.++||+||||||||++|+.+|+.+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 345699999999999988876655 3577889999999999999999999997654
Q ss_pred ----------CEEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHh
Q 003807 418 ----------PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (794)
Q Consensus 418 ----------pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e 483 (794)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.+. ...+|.||..
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls----------~~A~NaLLK~ 139 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS----------NSAFNALLKT 139 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC----------HHHHHHHHHH
Confidence 233343322 1234567777777643 235699999999883 3578899999
Q ss_pred hhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HH
Q 003807 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DL 555 (794)
Q Consensus 484 LDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL 555 (794)
|+. +...+++|.+|+.++.+.+.+++ |+ ..+.|..++.++..+.++..+++.+.. ++..+..|++ ++
T Consensus 140 LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 140 LEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 985 34567777778888889999987 66 668999999999999999888765543 3344566665 44
Q ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 556 ANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 556 ~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
.+++..+..++ ...||.+++...+
T Consensus 215 lslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 215 LFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred HHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 45555544432 3578988887653
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=173.74 Aligned_cols=201 Identities=19% Similarity=0.239 Sum_probs=137.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------EEE-
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------FYR- 422 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pf-------i~i- 422 (794)
..++.+|+||+|++.+++.|+.++. ..++|..+||+||||||||++||++|+.+++.- ..+
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 3445799999999999999887765 346787889999999999999999999997641 111
Q ss_pred eCcchhhh-------hh---hhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc
Q 003807 423 AGSEFEEM-------FV---GVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (794)
Q Consensus 423 s~se~~e~-------~v---G~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~ 488 (794)
+|-.+... +- ..+...+|++.+.+.. +...|+||||+|.|. ...+|.||+.|+.
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT----------~eAqNALLKtLEE-- 145 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS----------RSSFNALLKTLEE-- 145 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC----------HHHHHHHHHHHhc--
Confidence 01011000 00 1223456666655432 334699999999993 4788999999985
Q ss_pred cCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHH
Q 003807 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVN 560 (794)
Q Consensus 489 ~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn 560 (794)
+...+++|.+|+.+..|.+.|++ |+ .++.|..++.++..+.|++.+....+. .+..+..|++ ++.+++.
T Consensus 146 PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLd 222 (944)
T PRK14949 146 PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTD 222 (944)
T ss_pred cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44567777778888889889887 65 789999999999999999888764433 2233555655 4445555
Q ss_pred HHHHHHHHhCCCCCcHHHHHH
Q 003807 561 IAAIKAAVDGGEKLTATELEF 581 (794)
Q Consensus 561 ~Aal~Aa~~~~~~It~~dl~~ 581 (794)
++.. .+...++.+++..
T Consensus 223 Qala----~~~~~It~~~V~~ 239 (944)
T PRK14949 223 QAIA----FGGGQVMLTQVQT 239 (944)
T ss_pred HHHH----hcCCcccHHHHHH
Confidence 4442 1334566665543
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.9e-14 Score=165.78 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=140.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 418 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------- 418 (794)
..+.+|+||+|++.+++.|+..+. ..++|..+||+||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~-----------~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALR-----------QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 345689999999999999988776 24577778999999999999999999988641
Q ss_pred ----------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhh
Q 003807 419 ----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 484 (794)
Q Consensus 419 ----------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eL 484 (794)
++.++++. ..+...++++...+.. ..+.||+|||+|.+. ...++.|+..|
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls----------~~a~naLLk~L 140 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS----------KSAFNALLKTL 140 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC----------HHHHHHHHHHH
Confidence 33333321 1234456666554432 346799999999873 46788899888
Q ss_pred hccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHH
Q 003807 485 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLV 559 (794)
Q Consensus 485 Dg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlv 559 (794)
+.. ...+++|.+||.+..+.+.+.+ |+ .++.|..|+.++....++..++..++. ++..+..|++ |+..++
T Consensus 141 Eep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 141 EEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred HhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 853 3456777788888999999987 65 579999999999999999988765543 2333555655 555554
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 560 NIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 560 n~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+..-..... ...||.+++..++
T Consensus 216 n~Lekl~~~--~~~It~~~V~~~l 237 (504)
T PRK14963 216 SLLERLLAL--GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHhc--CCCCCHHHHHHHH
Confidence 443332222 3478888877653
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.1e-14 Score=170.84 Aligned_cols=204 Identities=21% Similarity=0.317 Sum_probs=142.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE--EeCc---
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY--RAGS--- 425 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~--is~s--- 425 (794)
+..+.+|+||+|++.+++.|+..+. ..+++.++||+||+|||||++|+++|+.++++-.. ..|.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 3455699999999999999988776 35678899999999999999999999998653110 0111
Q ss_pred -----------chhh--hhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc
Q 003807 426 -----------EFEE--MFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (794)
Q Consensus 426 -----------e~~e--~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~ 488 (794)
++.+ ...+.+...++++++.+.. ....||||||+|.+. ...+|.||+.|+.
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls----------~~A~NALLKtLEE-- 145 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS----------KSAFNAMLKTLEE-- 145 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC----------HHHHHHHHHHHHh--
Confidence 0100 0112334567777766532 334699999999883 3567889998885
Q ss_pred cCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHH
Q 003807 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVN 560 (794)
Q Consensus 489 ~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn 560 (794)
....+++|.+|+.+..+.+.+++ |+ ..+.|+.++.++....|+..++..++. ++..+..|++ ++.+++.
T Consensus 146 Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLD 222 (709)
T PRK08691 146 PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLD 222 (709)
T ss_pred CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34456777788888888888875 76 667888999999999999988866543 2333566665 4555555
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHH
Q 003807 561 IAAIKAAVDGGEKLTATELEFAKD 584 (794)
Q Consensus 561 ~Aal~Aa~~~~~~It~~dl~~Ai~ 584 (794)
.+... +...|+.+++...+.
T Consensus 223 qaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 223 QAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHh----cCCCcCHHHHHHHHc
Confidence 54433 345788887776543
No 81
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.62 E-value=1.7e-14 Score=157.80 Aligned_cols=202 Identities=20% Similarity=0.322 Sum_probs=139.5
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 418 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p----------- 418 (794)
...++.+|+|++|++++++.|.+.+. .++.|..+|||||||+|||++|+++|+.+.++
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~-----------~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIK-----------NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34456799999999999998887665 24567789999999999999999999987543
Q ss_pred -------------EEEEeCcchhhhhhhhhhHHHHHHHHHHHhC----CCeEEEEcCcccccccccccccchHHHHHHHH
Q 003807 419 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (794)
Q Consensus 419 -------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL 481 (794)
++.+++.. ..+...++++++.+... ...||+|||+|.+. ...++.|+
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~----------~~~~~~Ll 138 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS----------KSAFNALL 138 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC----------HHHHHHHH
Confidence 22222211 12334567777776532 23599999999883 34677888
Q ss_pred HhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHH
Q 003807 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLA 556 (794)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~ 556 (794)
..++.. ...+++|.+|+.++.+.+++.+ |+ ..+.+++|+.++..++++.+++..+.. ++..+..++. ++.
T Consensus 139 ~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~ 213 (355)
T TIGR02397 139 KTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLR 213 (355)
T ss_pred HHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChH
Confidence 888753 3456777778888888888887 66 578999999999999999988765532 2223334444 444
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 003807 557 NLVNIAAIKAAVDGGEKLTATELEFAKD 584 (794)
Q Consensus 557 nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ 584 (794)
.+.+..-..+.. ..+.||.++++.++.
T Consensus 214 ~a~~~lekl~~~-~~~~it~~~v~~~~~ 240 (355)
T TIGR02397 214 DALSLLDQLISF-GNGNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHHhh-cCCCCCHHHHHHHhC
Confidence 444433222222 224589998887653
No 82
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.60 E-value=9.7e-14 Score=154.25 Aligned_cols=214 Identities=21% Similarity=0.267 Sum_probs=145.9
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCcchhhh
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEM 430 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~se~~e~ 430 (794)
..+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|......
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 456789999888888776653211 2234579999999999999999999876 578999998654221
Q ss_pred ----------hhh-------hh-hHHHHHHHHHHHh-CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCC
Q 003807 431 ----------FVG-------VG-ARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 491 (794)
Q Consensus 431 ----------~vG-------~~-~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~ 491 (794)
..+ .. ...+..+.+.... ..+.||+|||+|.+.... ....+..|+..++... ..
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccC-CC
Confidence 111 01 1122333333332 456899999999997211 2356777777666543 33
Q ss_pred cEEEEEEcCCCC---CCChhhcCCCccc-eEEEccCCCHHHHHHHHHHHhccCC---CCCcccHHHHHH----------H
Q 003807 492 GIILMAATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDKP---LADDVDVKAIAR----------D 554 (794)
Q Consensus 492 ~VIVIaATN~p~---~LD~ALlRpGRFd-r~I~V~lPd~~eR~eILk~~l~~~~---l~~dvdl~~IAr----------D 554 (794)
++.+|+++|.++ .+++.+.+ ||. ..|.|++++.++..+|++.+++... .-++..++.+++ .
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 688888888664 46777765 553 5789999999999999999885421 112222344443 3
Q ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 555 LANLVNIAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 555 L~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
+.+++..|+..|..++...|+.+|+..|++++
T Consensus 251 a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 251 AIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 34778888888888888999999999999987
No 83
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=1e-14 Score=177.43 Aligned_cols=170 Identities=23% Similarity=0.334 Sum_probs=129.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEE
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 421 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~ 421 (794)
-...++++|+|.++. ++.++..|....+ .+++|+||||||||++|+++|..+ +.+++.
T Consensus 172 ~r~~~l~~vigr~~e---i~~~i~iL~r~~~---------~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 172 AEQGKLDPVIGRDEE---IRRTIQVLQRRTK---------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred HhcCCCCcCCCCHHH---HHHHHHHHhcCCc---------CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 344589999999986 5555554443222 379999999999999999999987 678888
Q ss_pred EeCcchh--hhhhhhhhHHHHHHHHHHHh-CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 422 RAGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 422 is~se~~--e~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
++.+.+. ..|.|..+++++.+|+.+.. ..++||||||+|.+.+.....++ ....+.|...+ .+..+.+|||
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~l----~~g~l~~Iga 313 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--MDAGNMLKPAL----ARGELHCVGA 313 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc--hhHHHHhcchh----hcCCCeEEEc
Confidence 8888765 45788889999999998654 56899999999999765432221 22233333333 3567999999
Q ss_pred cCCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCC
Q 003807 499 TNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPL 542 (794)
Q Consensus 499 TN~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l 542 (794)
|+..+ .+|+++.| ||+ .|.++.|+.+++..||+...+....
T Consensus 314 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 314 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred CCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 99876 48999999 997 5889999999999999887665433
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.9e-14 Score=167.08 Aligned_cols=199 Identities=17% Similarity=0.258 Sum_probs=139.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------ 418 (794)
...+.+|+||+|++.+++.|+..+. ..++|..+||+||+|||||++|+++|+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 3345699999999999998888776 45677789999999999999999999998752
Q ss_pred -----------------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHH
Q 003807 419 -----------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTL 477 (794)
Q Consensus 419 -----------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~L 477 (794)
++.++.. ...+...+|++.+.+.. +...|++|||+|.|. ....
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaa------s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls----------~~a~ 141 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAA------SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT----------NTAF 141 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcc------cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC----------HHHH
Confidence 1111111 11234567777766543 224699999999994 3568
Q ss_pred HHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH---
Q 003807 478 HQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--- 553 (794)
Q Consensus 478 nqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--- 553 (794)
|.||..|+. +...+++|.+|+.+..+.+.+++ |+ .+++|..++.++..+.++..+.+.++. ++..+..|++
T Consensus 142 NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 889988885 44566777777888888888887 65 789999999999999999888765544 2333566665
Q ss_pred -HHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 554 -DLANLVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 554 -DL~nlvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
++..+++..-.... .+...||.++++..
T Consensus 217 GslR~al~lLdq~ia-~~~~~It~~~V~~~ 245 (618)
T PRK14951 217 GSMRDALSLTDQAIA-FGSGQLQEAAVRQM 245 (618)
T ss_pred CCHHHHHHHHHHHHH-hcCCCcCHHHHHHH
Confidence 44444443211111 14456887777654
No 85
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=4.1e-14 Score=165.04 Aligned_cols=195 Identities=23% Similarity=0.314 Sum_probs=141.1
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 418 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------- 418 (794)
..+.+|+||+|++.+++.|+..+. ..++++.+||+||+|||||++|+.+|+.++++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIK-----------QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 345699999999999998888776 24567789999999999999999999988642
Q ss_pred -----------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHh
Q 003807 419 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (794)
Q Consensus 419 -----------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e 483 (794)
++.++++ .+.+...++++.+.+.. ....|++|||+|.+. ...+|.||..
T Consensus 79 C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt----------~~a~naLLKt 142 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS----------TGAFNALLKT 142 (559)
T ss_pred HHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------HHHHHHHHHH
Confidence 2222221 12345667787777653 234699999999983 3578899998
Q ss_pred hhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HH
Q 003807 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DL 555 (794)
Q Consensus 484 LDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL 555 (794)
++. +...+++|.+|+.++.+.+.+++ |+ ..+.|+.|+..+....++..++..++. ++..+..+++ ++
T Consensus 143 LEe--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 143 LEE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hcC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 885 44567777778889999999987 66 468899999999999999888765543 2333555565 44
Q ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 556 ANLVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 556 ~nlvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
.+++..+... +...||.+++..+
T Consensus 218 l~~Ldq~~~~----~~~~It~~~V~~v 240 (559)
T PRK05563 218 LSILDQAISF----GDGKVTYEDALEV 240 (559)
T ss_pred HHHHHHHHHh----ccCCCCHHHHHHH
Confidence 4555554433 2456888877654
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.6e-14 Score=172.30 Aligned_cols=206 Identities=19% Similarity=0.177 Sum_probs=137.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------EEE-
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------FYR- 422 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pf-------i~i- 422 (794)
...+.+|+||+|++.+++.|+..+. ..++++.+||+||+|||||++|++||+.++|.- -.+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 3455699999999999999888776 356777899999999999999999999997521 110
Q ss_pred eCcc----------hhhh--hhhhhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhc
Q 003807 423 AGSE----------FEEM--FVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 486 (794)
Q Consensus 423 s~se----------~~e~--~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg 486 (794)
+|-. +.+. ....+...+|++.+.+. .....|+||||+|.|. ....|.||+.|+.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt----------~~a~NaLLK~LEE 146 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT----------PQGFNALLKIVEE 146 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------HHHHHHHHHHHhC
Confidence 0000 0000 00012344555544332 2445799999999994 4678899999985
Q ss_pred cccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHH
Q 003807 487 FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNI 561 (794)
Q Consensus 487 ~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~ 561 (794)
. ...+++|.+|+.++.|-+.|++ |+ .++.|..++.++..++|+..+++.++. ++..+..|++ ++..+++.
T Consensus 147 p--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~e 221 (824)
T PRK07764 147 P--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSV 221 (824)
T ss_pred C--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 4567777777888888888887 54 678999999999999999888765543 2223445555 44444433
Q ss_pred HHHHHHHhCCCCCcHHHHHHH
Q 003807 562 AAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 562 Aal~Aa~~~~~~It~~dl~~A 582 (794)
.-......+...||.+++...
T Consensus 222 LEKLia~~~~~~IT~e~V~al 242 (824)
T PRK07764 222 LDQLLAGAGPEGVTYERAVAL 242 (824)
T ss_pred HHHHHhhcCCCCCCHHHHHHH
Confidence 322223224456877766543
No 87
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.5e-14 Score=166.96 Aligned_cols=201 Identities=19% Similarity=0.274 Sum_probs=140.1
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 418 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p----------- 418 (794)
....+.+|+||+|++.+++.|...+. ..+++..+||+||||||||++|+++|+.+++.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~-----------~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQ-----------ENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 34556799999999999999888776 34566789999999999999999999998763
Q ss_pred -------------EEEEeCcchhhhhhhhhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccccchHHHHHHHH
Q 003807 419 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (794)
Q Consensus 419 -------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL 481 (794)
++.+++.. ..+...++.+.+.+. .....||||||+|.+. ...++.||
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt----------~~a~naLL 140 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT----------REAFNALL 140 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC----------HHHHHHHH
Confidence 23332211 112234444433332 2345699999999994 35678899
Q ss_pred HhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHH
Q 003807 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLA 556 (794)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~ 556 (794)
..|+. ....+++|.+||.+..+.+.+++ |+ .++.|+.++.++...+|+..+...... ++..+..|++ ++.
T Consensus 141 k~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 88885 34567888888888888888887 66 578999999999999998887665432 3334555555 444
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 557 NLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 557 nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
.+++.....+ ..+...|+.+++..++
T Consensus 216 ~Al~lLeqll-~~g~~~It~d~V~~~l 241 (624)
T PRK14959 216 DSMSLLGQVL-ALGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHHH-HhcCCCcCHHHHHHHh
Confidence 4444432222 2355689988887665
No 88
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.3e-14 Score=164.92 Aligned_cols=206 Identities=19% Similarity=0.203 Sum_probs=139.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEEE-e
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYR-A 423 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-------fi~i-s 423 (794)
..+.+|+||+|++.+++.|+..+. .+++|..+||+||+|||||++|+++|+.+++. +-.+ +
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 345699999999999999888776 35678789999999999999999999988752 1111 0
Q ss_pred Ccc----------hhhh--hhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc
Q 003807 424 GSE----------FEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (794)
Q Consensus 424 ~se----------~~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~ 487 (794)
|-. +.+. -...+...++++.+.+.. ....|++|||+|.+. ....|.||..|+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt----------~~A~NALLK~LEE- 144 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT----------TAGFNALLKIVEE- 144 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC----------HHHHHHHHHHHhc-
Confidence 000 1000 001133455655544432 234699999999994 3578899999985
Q ss_pred ccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHH
Q 003807 488 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIA 562 (794)
Q Consensus 488 ~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~A 562 (794)
....+++|.+|+.++.|.+.+++ |. .++.|..++.++..+.++.+++..+.. ++..+..|++ +++.+++..
T Consensus 145 -pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 145 -PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred -CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44567888888888999999987 63 689999999999999998888765543 2333455555 344333333
Q ss_pred HHHHHHhCCCCCcHHHHHHHH
Q 003807 563 AIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 563 al~Aa~~~~~~It~~dl~~Ai 583 (794)
-..+...+...||.+++...+
T Consensus 221 dql~~~~~~~~It~~~v~~ll 241 (584)
T PRK14952 221 DQLLAGAADTHVTYQRALGLL 241 (584)
T ss_pred HHHHhccCCCCcCHHHHHHHH
Confidence 222222235678887776553
No 89
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.1e-14 Score=163.96 Aligned_cols=202 Identities=20% Similarity=0.270 Sum_probs=138.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE--EeCcc---
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY--RAGSE--- 426 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~--is~se--- 426 (794)
..+.+|+||+|++.+++.|...+. ..+++..+||+||||||||++|+++|+.+++..-. -.|..
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~-----------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALE-----------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 345689999999999998887776 35677789999999999999999999998763110 01110
Q ss_pred -----------hhhh--hhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc
Q 003807 427 -----------FEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ 489 (794)
Q Consensus 427 -----------~~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~ 489 (794)
+.+. -...+...+|++.+.+.. ....|++|||+|.+. ....|.||..|+. +
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls----------~~a~naLLK~LEe--p 146 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS----------KSAFNAMLKTLEE--P 146 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC----------HHHHHHHHHHHhC--C
Confidence 0000 001234567777776643 234699999999984 3567889999886 3
Q ss_pred CCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHH
Q 003807 490 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNI 561 (794)
Q Consensus 490 ~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~ 561 (794)
...+++|.+|+.++.+.+.+++ |+ ..++|..++.++....++..+...+.. ++..+..|++ ++.+++..
T Consensus 147 p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 147 PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4566777777878888878876 65 778999999999999888887655443 2233455555 44444444
Q ss_pred HHHHHHHhCCCCCcHHHHHHHH
Q 003807 562 AAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 562 Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+... +...|+.+++...+
T Consensus 224 ai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 224 AIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHh----cCCCcCHHHHHHHH
Confidence 4332 45677877766543
No 90
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.5e-14 Score=162.21 Aligned_cols=199 Identities=18% Similarity=0.274 Sum_probs=137.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 418 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------- 418 (794)
..+.+|+||+|++.+++.|...+. .++.+..+||+||||||||++|+++|+.+++.
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~-----------~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALE-----------TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 345699999999999988877765 34567789999999999999999999988651
Q ss_pred -----------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHh
Q 003807 419 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (794)
Q Consensus 419 -----------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e 483 (794)
++.+++. ...+...++++.+.+.. ....|++|||+|.+. ...++.||..
T Consensus 79 C~~i~~~~~~dlieidaa------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls----------~~a~naLLK~ 142 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAA------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS----------KQSFNALLKT 142 (546)
T ss_pred HHHHhcCCCCceEEeecc------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc----------HHHHHHHHHH
Confidence 2222211 11123445566555442 345699999999983 3577889988
Q ss_pred hhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHH
Q 003807 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANL 558 (794)
Q Consensus 484 LDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nl 558 (794)
|+. +...+++|.+|+.+..+.+.+++ |+ ..++|..++.++....++..++..++. ++..+..|++ |++.+
T Consensus 143 LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~a 217 (546)
T PRK14957 143 LEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDA 217 (546)
T ss_pred Hhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 885 34556667677778888878876 65 789999999999998888877765433 3334555555 55555
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 559 VNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 559 vn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
++.....+...+ ..|+.++++.++
T Consensus 218 lnlLek~i~~~~-~~It~~~V~~~l 241 (546)
T PRK14957 218 LSLLDQAISFCG-GELKQAQIKQML 241 (546)
T ss_pred HHHHHHHHHhcc-CCCCHHHHHHHH
Confidence 444433222222 568887777643
No 91
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=6.8e-14 Score=162.78 Aligned_cols=185 Identities=19% Similarity=0.279 Sum_probs=126.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 466 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 466 (794)
+.++|||++|||||+|++||++++ +..++++++.+|...+.........+.|.... ..+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 359999999999999999999976 56889999998877665433322223344322 245899999999996542
Q ss_pred cccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC---CCChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCC
Q 003807 467 KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKP 541 (794)
Q Consensus 467 ~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~---~LD~ALlRpGRFdr--~I~V~lPd~~eR~eILk~~l~~~~ 541 (794)
.+...|+..++.+..+.+-+||++...|. .+++.|.+ ||.. .+.+..||.+.|.+||+.++....
T Consensus 394 --------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~ 463 (617)
T PRK14086 394 --------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQ 463 (617)
T ss_pred --------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcC
Confidence 12223333333333333445554444443 56788888 7755 779999999999999999987765
Q ss_pred CCC-cccHHHHHH-------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 003807 542 LAD-DVDVKAIAR-------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILM 588 (794)
Q Consensus 542 l~~-dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~ 588 (794)
+.- +.-+..|+. +|..++++....+...+ +.||.+.+++++..++.
T Consensus 464 l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 464 LNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred CCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 542 223455555 77777777766665544 67999999998887654
No 92
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.57 E-value=3.1e-14 Score=173.45 Aligned_cols=196 Identities=21% Similarity=0.306 Sum_probs=140.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 422 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~i 422 (794)
...+++.++|.++.... ++..|... ...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~---~~~~l~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRR---TIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHH---HHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 44579999999986444 44443332 22478999999999999999999975 6778888
Q ss_pred eCcchh--hhhhhhhhHHHHHHHHHHHh-CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 423 AGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 423 s~se~~--e~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
+.+.+. ..|.|..+.+++.+|+.+.. ..|+||||||||.+.+.....+ .....+.|...+ .+..+.+|++|
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~~~Lk~~l----~~g~i~~IgaT 309 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--AMDAGNMLKPAL----ARGELHCIGAT 309 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--hhHHHHHhchhh----hcCceEEEEeC
Confidence 877764 46888889999999999865 4589999999999976432211 122333333332 35679999999
Q ss_pred CCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCccc-----HHHHHH-------------HHH
Q 003807 500 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-----VKAIAR-------------DLA 556 (794)
Q Consensus 500 N~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvd-----l~~IAr-------------DL~ 556 (794)
+..+ .+|+++.| ||. .|.++.|+.+++..||+.+.........+. +..++. ...
T Consensus 310 t~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAi 386 (852)
T TIGR03346 310 TLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAI 386 (852)
T ss_pred cHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHH
Confidence 9774 47999999 996 589999999999999998876655443332 222222 445
Q ss_pred HHHHHHHHHHHHh
Q 003807 557 NLVNIAAIKAAVD 569 (794)
Q Consensus 557 nlvn~Aal~Aa~~ 569 (794)
.++.+|+..+...
T Consensus 387 dlld~a~a~~~~~ 399 (852)
T TIGR03346 387 DLIDEAAARIRME 399 (852)
T ss_pred HHHHHHHHHHHhh
Confidence 6778777665443
No 93
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.57 E-value=8.8e-14 Score=142.61 Aligned_cols=196 Identities=18% Similarity=0.247 Sum_probs=125.6
Q ss_pred CCcccccC--CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhh
Q 003807 355 KTFKDVKG--CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (794)
Q Consensus 355 ~tFdDVvG--~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e 429 (794)
.+|+++++ .+.+.+.++.++. ...+.+++|+||||||||++|+++++++ +.++++++|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 57888773 4556666655543 1235689999999999999999999876 57899999988754
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCC---
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD--- 506 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD--- 506 (794)
.. .+++.... .+.+|+|||+|.+.... .....+...++........+|++++..+..++
T Consensus 80 ~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~--------~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 80 AD--------PEVLEGLE--QADLVCLDDVEAIAGQP--------EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred hH--------HHHHhhcc--cCCEEEEeChhhhcCCh--------HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 32 23333322 23599999999985421 11223333333222223344554444444432
Q ss_pred hhhcCCCcc--ceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 507 PALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 507 ~ALlRpGRF--dr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
+.|.+ || ..++.+++|+.+++..+++.++...... ++.-+..|++ ++.++++.+...+...+ ..|+.
T Consensus 142 ~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~-~~i~~ 218 (226)
T TIGR03420 142 PDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAK-RKITI 218 (226)
T ss_pred HHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC-CCCCH
Confidence 66776 55 4789999999999999999887654432 2222444554 78888888766555544 57888
Q ss_pred HHHHHHH
Q 003807 577 TELEFAK 583 (794)
Q Consensus 577 ~dl~~Ai 583 (794)
+.+.+.+
T Consensus 219 ~~~~~~~ 225 (226)
T TIGR03420 219 PFVKEVL 225 (226)
T ss_pred HHHHHHh
Confidence 8776653
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=8e-14 Score=166.29 Aligned_cols=204 Identities=24% Similarity=0.276 Sum_probs=132.6
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
....+.+|+|++|++........+...+.. .+.| ++|||||||||||++|+++|+..+.+|+.+++...
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~--------~~~~-slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKA--------DRVG-SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhc--------CCCc-eEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 344567999999999987543223232222 2233 79999999999999999999999999998887532
Q ss_pred hhhhhhhHHHHHHHHHHH-----hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCC-C-
Q 003807 430 MFVGVGARRVRSLFQAAK-----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL-P- 502 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~-p- 502 (794)
+.+.++..+..+. .....+|||||||.+.. ...+.|+..++ +..+++|++|+. +
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~----------~qQdaLL~~lE----~g~IiLI~aTTenp~ 149 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK----------AQQDALLPWVE----NGTITLIGATTENPY 149 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----------HHHHHHHHHhc----CceEEEEEecCCChH
Confidence 1123344444432 13457999999999843 33455666555 345777776643 2
Q ss_pred CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc-------CCCC-CcccHHHHHH-------HHHHHHHHHHHHHH
Q 003807 503 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-------KPLA-DDVDVKAIAR-------DLANLVNIAAIKAA 567 (794)
Q Consensus 503 ~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~-------~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa 567 (794)
..+++++++ |+ ..+.+++++.+++..|++.++.. ..+. ++..+..|++ .+.++++.++..+.
T Consensus 150 ~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~ 226 (725)
T PRK13341 150 FEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTP 226 (725)
T ss_pred hhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 468889987 53 56899999999999999998862 1111 2222455555 55566665553322
Q ss_pred HhC--CCCCcHHHHHHHHHHH
Q 003807 568 VDG--GEKLTATELEFAKDRI 586 (794)
Q Consensus 568 ~~~--~~~It~~dl~~Ai~ri 586 (794)
..+ ...||.+++++++.+.
T Consensus 227 ~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 227 PDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred cCCCCceeccHHHHHHHHHHh
Confidence 122 1237888888877653
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.7e-14 Score=164.43 Aligned_cols=198 Identities=19% Similarity=0.309 Sum_probs=139.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 418 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------- 418 (794)
..+.+|+||+|++.+++.|...+. .+++|..+|||||+|||||++|+++|+.++++
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 345699999999999999988775 34678889999999999999999999998653
Q ss_pred -----------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHh
Q 003807 419 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (794)
Q Consensus 419 -----------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e 483 (794)
++.+++.. ..+...++++.+.+.. ....|++|||+|.+. ....|.||..
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt----------~~a~naLLk~ 142 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS----------TNAFNALLKT 142 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC----------HHHHHHHHHH
Confidence 22222211 1234567777766543 223599999999984 3578899999
Q ss_pred hhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHH
Q 003807 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANL 558 (794)
Q Consensus 484 LDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nl 558 (794)
|+. +...+++|.+|+.++.|.+.+++ |+ .++.|..++..+....++..+++.++. ++..+..+++ ++..+
T Consensus 143 LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~a 217 (576)
T PRK14965 143 LEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDS 217 (576)
T ss_pred HHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHH
Confidence 985 45567788888889999999987 65 578999999999988888888765543 3344555655 44444
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 559 VNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 559 vn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
++........ ....|+.+++...
T Consensus 218 l~~Ldqliay-~g~~It~edV~~l 240 (576)
T PRK14965 218 LSTLDQVLAF-CGDAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHh-ccCCCCHHHHHHH
Confidence 4433222222 2245888887654
No 96
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.2e-13 Score=152.82 Aligned_cols=206 Identities=19% Similarity=0.278 Sum_probs=136.6
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch---
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF--- 427 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~--- 427 (794)
...+.+|+||+|++.+++.+...+. .++.|.++|||||||+|||++|+++|+.++++.....+..+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~-----------~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIE-----------NNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3456799999999999888877665 24567799999999999999999999988653211111100
Q ss_pred ---hhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 428 ---EEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 428 ---~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
.+.....+...++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++. +....++|.+|+
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----------~~~~~ll~~le~--~~~~~~~Il~~~ 146 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----------AAFNAFLKTLEE--PPAHAIFILATT 146 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------HHHHHHHHHHhC--CCCceEEEEEeC
Confidence 000111223567777776643 2356999999998843 456778877775 233455666677
Q ss_pred CCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHHHHHhCCCCCc
Q 003807 501 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIKAAVDGGEKLT 575 (794)
Q Consensus 501 ~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~~~~It 575 (794)
.+..+.+++.+ |+ ..+.++.|+.++...++...+.+.++. ++..+..++. |+..++++....+.-.+.. ||
T Consensus 147 ~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~-it 222 (367)
T PRK14970 147 EKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKN-IT 222 (367)
T ss_pred CcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CC
Confidence 77888889887 55 468999999999999998887765542 3334455554 5555554443333322333 88
Q ss_pred HHHHHHHH
Q 003807 576 ATELEFAK 583 (794)
Q Consensus 576 ~~dl~~Ai 583 (794)
.++++..+
T Consensus 223 ~~~v~~~~ 230 (367)
T PRK14970 223 RQAVTENL 230 (367)
T ss_pred HHHHHHHh
Confidence 87776554
No 97
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=1.5e-13 Score=156.20 Aligned_cols=187 Identities=18% Similarity=0.263 Sum_probs=122.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 467 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~ 467 (794)
.++++||||||+|||+|++++++++ +..++++++.++...+.......-...|.... ..+++|+|||++.+.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 3579999999999999999999876 68899999887765443222111112343332 3457999999999865321
Q ss_pred ccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC---CCChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCC
Q 003807 468 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPL 542 (794)
Q Consensus 468 ~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~---~LD~ALlRpGRFd--r~I~V~lPd~~eR~eILk~~l~~~~l 542 (794)
.++.+..+++. +......+|+++++.|. .+++.|.+ ||. ..+.+++|+.++|.+||+..+....+
T Consensus 220 -----~qeelf~l~N~---l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 -----TQEEFFHTFNS---LHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred -----hHHHHHHHHHH---HHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 12223333322 22233456666555554 46788888 885 68899999999999999998877654
Q ss_pred C-CcccHHHHHH-------HHHHHHHHHHH---HHHHhCCCCCcHHHHHHHHHHHhcc
Q 003807 543 A-DDVDVKAIAR-------DLANLVNIAAI---KAAVDGGEKLTATELEFAKDRILMG 589 (794)
Q Consensus 543 ~-~dvdl~~IAr-------DL~nlvn~Aal---~Aa~~~~~~It~~dl~~Ai~ri~~g 589 (794)
. ++.-++.||. +|.+.++..+. .+... ...||.+++++++...+..
T Consensus 290 ~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~-~~~i~~~~~~~~l~~~~~~ 346 (445)
T PRK12422 290 RIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLS-HQLLYVDDIKALLHDVLEA 346 (445)
T ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhhhc
Confidence 3 2222444554 66666666642 22222 3679999999999876543
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.56 E-value=2e-13 Score=141.00 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=123.9
Q ss_pred CCCCCccccc--CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 352 KNVKTFKDVK--GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 352 ~~~~tFdDVv--G~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
.+..+|++++ +..++...++++.. +...+.+++|+||||||||+||+++++++ +.+++++++..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 3446899977 34555555544443 22334589999999999999999999875 67888988877
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCC-CC--
Q 003807 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL-PD-- 503 (794)
Q Consensus 427 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~-p~-- 503 (794)
+.... . ......+|+|||+|.+... ....+..+ ++....+...++|.+++. |.
T Consensus 81 ~~~~~------------~--~~~~~~~liiDdi~~l~~~-------~~~~L~~~---~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 81 PLLAF------------D--FDPEAELYAVDDVERLDDA-------QQIALFNL---FNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred hHHHH------------h--hcccCCEEEEeChhhcCch-------HHHHHHHH---HHHHHHcCCcEEEEeCCCCHHhC
Confidence 64321 1 1123569999999988431 22333333 433333444334444443 31
Q ss_pred CCChhhcCCCcc--ceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCCC
Q 003807 504 ILDPALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGEK 573 (794)
Q Consensus 504 ~LD~ALlRpGRF--dr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~ 573 (794)
.+.+.|.+ || ...+.+++|+.+++..+++.+.....+. ++.-+..|++ ++.++++.-...|...+ ..
T Consensus 137 ~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~-~~ 213 (227)
T PRK08903 137 PLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQK-RP 213 (227)
T ss_pred CCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 34566765 66 5699999999999999998877654433 2223444544 66777777555444444 78
Q ss_pred CcHHHHHHHHH
Q 003807 574 LTATELEFAKD 584 (794)
Q Consensus 574 It~~dl~~Ai~ 584 (794)
||...+++++.
T Consensus 214 i~~~~~~~~l~ 224 (227)
T PRK08903 214 VTLPLLREMLA 224 (227)
T ss_pred CCHHHHHHHHh
Confidence 99888877653
No 99
>PRK06893 DNA replication initiation factor; Validated
Probab=99.56 E-value=1.2e-13 Score=143.87 Aligned_cols=202 Identities=14% Similarity=0.174 Sum_probs=123.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e 429 (794)
+..+|++++|.+... .+..+... +.. . ....++||||||||||+|++|+|+++ +....+++......
T Consensus 11 ~~~~fd~f~~~~~~~-~~~~~~~~------~~~--~-~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~ 80 (229)
T PRK06893 11 DDETLDNFYADNNLL-LLDSLRKN------FID--L-QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY 80 (229)
T ss_pred CcccccccccCChHH-HHHHHHHH------hhc--c-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh
Confidence 346899999776432 11111111 111 1 11258999999999999999999986 44555555532211
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCC-cEEEEEEcCCCCCCC--
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE-GIILMAATNLPDILD-- 506 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~-~VIVIaATN~p~~LD-- 506 (794)
. ...+++..+ ...+|+|||++.+.+... .+..+..+++.+ ..+. .++|++++..|..++
T Consensus 81 ~--------~~~~~~~~~--~~dlLilDDi~~~~~~~~-----~~~~l~~l~n~~---~~~~~~illits~~~p~~l~~~ 142 (229)
T PRK06893 81 F--------SPAVLENLE--QQDLVCLDDLQAVIGNEE-----WELAIFDLFNRI---KEQGKTLLLISADCSPHALSIK 142 (229)
T ss_pred h--------hHHHHhhcc--cCCEEEEeChhhhcCChH-----HHHHHHHHHHHH---HHcCCcEEEEeCCCChHHcccc
Confidence 1 112333332 346999999999865321 123344444433 2333 355666666777654
Q ss_pred -hhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCCCCcHH
Q 003807 507 -PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGEKLTAT 577 (794)
Q Consensus 507 -~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~It~~ 577 (794)
+.|.++.++...+.++.||.++|.+|++..+....+. ++.-+..|++ .+.++++.... +.....+.||..
T Consensus 143 ~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~-~~~~~~~~it~~ 221 (229)
T PRK06893 143 LPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDK-ASLQAQRKLTIP 221 (229)
T ss_pred chhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH-HHHhcCCCCCHH
Confidence 7888855566799999999999999999888655443 2333555665 55566665543 333333578988
Q ss_pred HHHHHH
Q 003807 578 ELEFAK 583 (794)
Q Consensus 578 dl~~Ai 583 (794)
.+++++
T Consensus 222 ~v~~~L 227 (229)
T PRK06893 222 FVKEIL 227 (229)
T ss_pred HHHHHh
Confidence 887664
No 100
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.7e-13 Score=156.09 Aligned_cols=199 Identities=19% Similarity=0.225 Sum_probs=138.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 418 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------- 418 (794)
..+.+|+||+|++.+++.|...+. .+++|..+|||||||+|||++|+++|+.+.++
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~-----------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 345799999999999988877775 35677889999999999999999999987542
Q ss_pred ------------EEEEeCcchhhhhhhhhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccccchHHHHHHHHH
Q 003807 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (794)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~ 482 (794)
++.+++.. ..+...++++.+... .....||+|||+|.+. ....+.|+.
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt----------~~~~n~LLk 143 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT----------KEAFNSLLK 143 (451)
T ss_pred HHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC----------HHHHHHHHH
Confidence 22222211 012234444433332 2346799999999984 346788888
Q ss_pred hhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHH
Q 003807 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLAN 557 (794)
Q Consensus 483 eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~n 557 (794)
.|+.. ...+++|.+||.+..|.+++.+ |+ ..++|+.++.++....++..+++.+.. ++..+..|+. |+..
T Consensus 144 ~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 144 TLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRD 218 (451)
T ss_pred HhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 88863 4466777778888899999987 65 578999999999999998887665432 3334555655 5666
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 558 LVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 558 lvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+++.....+...+ ..|+.+++..++
T Consensus 219 a~~~Lekl~~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 219 AESLYDYVVGLFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHhcc-CCcCHHHHHHHH
Confidence 6665543333323 458888887655
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.3e-13 Score=163.17 Aligned_cols=207 Identities=24% Similarity=0.329 Sum_probs=143.7
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE---EeCcc
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY---RAGSE 426 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~---is~se 426 (794)
...++.+|+||+|++.+++.|+..+. ..+++..+||+||+|||||++|+++|..+.++--. -.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 34566799999999999999888776 34677889999999999999999999988764210 01111
Q ss_pred hhh-------hh-----hhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccC
Q 003807 427 FEE-------MF-----VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN 490 (794)
Q Consensus 427 ~~e-------~~-----vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~ 490 (794)
+.. .+ ...+...+|++.+.+.. ....|++|||+|.+. ...++.||..|+. +.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT----------~~A~NALLKtLEE--PP 146 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS----------KSAFNALLKTLEE--PP 146 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC----------HHHHHHHHHHhhc--CC
Confidence 100 00 01234567787777653 334699999999984 3578889999885 45
Q ss_pred CcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHH
Q 003807 491 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIK 565 (794)
Q Consensus 491 ~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~ 565 (794)
..+++|.+|+.++.|.+.+++ |+ .++.|.+|+.++....++..+...++. ++..+..+|+ +++.+++.+...
T Consensus 147 ~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl 223 (725)
T PRK07133 147 KHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQV 223 (725)
T ss_pred CceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 567788888889999999987 76 589999999999999998877665433 2223555555 444444433322
Q ss_pred HHHhCCCCCcHHHHHHHH
Q 003807 566 AAVDGGEKLTATELEFAK 583 (794)
Q Consensus 566 Aa~~~~~~It~~dl~~Ai 583 (794)
+.. +...|+.+++..++
T Consensus 224 ~~y-~~~~It~e~V~ell 240 (725)
T PRK07133 224 SIF-GNNKITLKNVEELF 240 (725)
T ss_pred HHh-ccCCCCHHHHHHHH
Confidence 222 23458888887653
No 102
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=9.2e-14 Score=161.55 Aligned_cols=199 Identities=17% Similarity=0.251 Sum_probs=139.1
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------ 418 (794)
...+.+|+||+|++.+++.|...+. .++.|+++||+||||||||++|+++|+.+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4456799999999999988877664 35677889999999999999999999988541
Q ss_pred ------------EEEEeCcchhhhhhhhhhHHHHHHHHHHHhC----CCeEEEEcCcccccccccccccchHHHHHHHHH
Q 003807 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (794)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~ 482 (794)
++.++++. ..+...+|.+.+.+... ...|++|||+|.+. ....+.||.
T Consensus 78 sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt----------~~A~NaLLK 141 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS----------TSAWNALLK 141 (605)
T ss_pred HHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC----------HHHHHHHHH
Confidence 12222111 12344577776655432 23599999999983 246788888
Q ss_pred hhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHH
Q 003807 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLAN 557 (794)
Q Consensus 483 eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~n 557 (794)
.|+. +...+++|.+|+.+..|.+.+++ |+ .++.|+.|+..+....++..+...+.. ++..+..+++ +++.
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~ 216 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRD 216 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHH
Confidence 8885 44567788888889999999987 66 478999999999999998887655432 2233445554 4554
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 558 LVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 558 lvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
+++.....+...+ ..|+.+++...
T Consensus 217 AlnlLekL~~y~~-~~It~e~V~el 240 (605)
T PRK05896 217 GLSILDQLSTFKN-SEIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHhhcC-CCCCHHHHHHH
Confidence 4444443333333 33888877764
No 103
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.55 E-value=5.5e-14 Score=170.75 Aligned_cols=162 Identities=22% Similarity=0.304 Sum_probs=126.0
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeC
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAG 424 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~is~ 424 (794)
-.|+.|+|.++..+.+.+++. .+.+.+++|+||||||||++|+++|.+. +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 468999999998777766554 2344589999999999999999999976 367889988
Q ss_pred cchh--hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 425 SEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 425 se~~--e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
+.+. ..|.|+.+.+++.+|+.++...++||||||||.+.+.....+. ....+.|...+. +..+.+|++|+..
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~--~~~a~lLkp~l~----rg~l~~IgaTt~~ 317 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA--IDAANILKPALA----RGELQCIGATTLD 317 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc--ccHHHHhHHHHh----CCCcEEEEeCCHH
Confidence 8775 4678888999999999998888899999999999765432211 122333333332 5678999999976
Q ss_pred C-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 503 D-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 503 ~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
+ ..|+++.+ ||. .|.++.|+.++...|++...
T Consensus 318 ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 318 EYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHH
Confidence 4 47999999 995 57999999999999987644
No 104
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=7.1e-14 Score=156.64 Aligned_cols=158 Identities=22% Similarity=0.354 Sum_probs=116.4
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE----------------
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF---------------- 419 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pf---------------- 419 (794)
.|++|+|++.+++.|+..+..-+. .+...+.++|.++||+||||+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 599999999999999998874322 23345667899999999999999999999999876531
Q ss_pred -------EEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc
Q 003807 420 -------FYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (794)
Q Consensus 420 -------i~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~ 488 (794)
..+.... ...+...+|++++.+.. ....|+||||+|.+.. ...|.||+.|+..
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----------~aanaLLk~LEep- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----------RAANALLKAVEEP- 144 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----------HHHHHHHHHhhcC-
Confidence 1111110 11234568888887764 2346999999999943 4568899988853
Q ss_pred cCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHH
Q 003807 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILEL 535 (794)
Q Consensus 489 ~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~ 535 (794)
..++++|.+|+.++.|.+.+++ |+ ..+.|++|+.++..++|..
T Consensus 145 -~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 145 -PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred -CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 3344455555558999999998 76 6899999999998887763
No 105
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.7e-14 Score=163.22 Aligned_cols=164 Identities=27% Similarity=0.377 Sum_probs=127.6
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh---------
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE--------- 428 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~--------- 428 (794)
.|-.|.+++|+++.+.+.-.+.... .+-| -++|+||||+|||+|++.||..+|.+|+.++.....
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~-----~kGp-ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK-----LKGP-ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc-----CCCc-EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4679999999999887664333221 1112 588999999999999999999999999999876653
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhc---------c----ccCCcEEE
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG---------F----EQNEGIIL 495 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg---------~----~~~~~VIV 495 (794)
..|+|....++-+-...|....| +++|||||.++..- .+.... .||+.||- + -.-+.|++
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~---rGDPaS---ALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF---RGDPAS---ALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC---CCChHH---HHHhhcCHhhcCchhhccccCccchhheEE
Confidence 24899999999999999988888 88899999997642 222233 34433331 1 11246999
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
|+|+|..+.++..|+. |+ .+|.+.-++..+..+|.+.|+
T Consensus 470 iaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 9999999999999987 77 689999999999999999987
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=3.3e-13 Score=158.16 Aligned_cols=205 Identities=19% Similarity=0.235 Sum_probs=142.8
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe-----
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA----- 423 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is----- 423 (794)
.....+.+|+||+|++.+++.|...+. .+++|.++||+||+|+|||++|+++|+.+++.....+
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 334566799999999999999888775 3567889999999999999999999999876421111
Q ss_pred --Cc--------------chhhhh--hhhhhHHHHHHHHHHHhC----CCeEEEEcCcccccccccccccchHHHHHHHH
Q 003807 424 --GS--------------EFEEMF--VGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (794)
Q Consensus 424 --~s--------------e~~e~~--vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL 481 (794)
|. ++.+.. ...+...+|++.+.+... ...|++|||+|.+. ....|.||
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls----------~~a~naLL 153 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS----------TAAFNALL 153 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC----------HHHHHHHH
Confidence 11 111100 012345678887776532 35699999999993 35688899
Q ss_pred HhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------
Q 003807 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR------- 553 (794)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr------- 553 (794)
..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..+++.... ++..+..|++
T Consensus 154 KtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr 228 (598)
T PRK09111 154 KTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVR 228 (598)
T ss_pred HHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 888853 4456666677777788888877 65 679999999999999999888765443 2233444555
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 554 DLANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 554 DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
++.++++.+... +...||.++++..+
T Consensus 229 ~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 229 DGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 444555444332 34579998887654
No 107
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.53 E-value=4.1e-13 Score=158.67 Aligned_cols=213 Identities=21% Similarity=0.255 Sum_probs=138.5
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------C---CCEEEEeCcch
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------G---VPFFYRAGSEF 427 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-------g---~pfi~is~se~ 427 (794)
+.|.|.++..++|..++..... |..+...++|+|+||||||++++.+..++ + +.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 4567777777777666654221 22222345699999999999999998765 2 55789999654
Q ss_pred hhhh---h-------------h-hhhHHHHHHHHHHHh--CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc
Q 003807 428 EEMF---V-------------G-VGARRVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (794)
Q Consensus 428 ~e~~---v-------------G-~~~~~vr~lF~~Ar~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~ 488 (794)
...+ . | .....+..+|..... ....||+|||||.|..+ .+..+..|+.... .
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-------~QDVLYnLFR~~~--~ 898 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-------TQKVLFTLFDWPT--K 898 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-------HHHHHHHHHHHhh--c
Confidence 3221 0 1 122345566665522 33579999999999753 2455666665433 2
Q ss_pred cCCcEEEEEEcCC---CCCCChhhcCCCccce-EEEccCCCHHHHHHHHHHHhccCC-CCCcccHHHHHH-------HHH
Q 003807 489 QNEGIILMAATNL---PDILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQDKP-LADDVDVKAIAR-------DLA 556 (794)
Q Consensus 489 ~~~~VIVIaATN~---p~~LD~ALlRpGRFdr-~I~V~lPd~~eR~eILk~~l~~~~-l~~dvdl~~IAr-------DL~ 556 (794)
....++|||++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+.... .-++..++.+|+ |++
T Consensus 899 s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDAR 976 (1164)
T PTZ00112 899 INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIR 976 (1164)
T ss_pred cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHH
Confidence 3567999999985 5567788877 5544 588899999999999999987531 122333555554 555
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 003807 557 NLVNIAAIKAAVDGGEKLTATELEFAKDRILM 588 (794)
Q Consensus 557 nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~ 588 (794)
.+++.....+...+...|+.+|+..|.+++..
T Consensus 977 KALDILRrAgEikegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 977 KALQICRKAFENKRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHHHhhcCCCccCHHHHHHHHHHHHh
Confidence 44433322222345568999999999987643
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.9e-13 Score=155.44 Aligned_cols=204 Identities=22% Similarity=0.285 Sum_probs=137.8
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------CEEEE
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYR 422 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~-------pfi~i 422 (794)
...++.+|+|++|++.+++.|+..+. ..+++..+|||||||+|||++|+.+|..+++ |+-.+
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVK-----------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 34456799999999999998877775 3456778899999999999999999998864 11110
Q ss_pred -eCcchh-----hhh-----hhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc
Q 003807 423 -AGSEFE-----EMF-----VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (794)
Q Consensus 423 -s~se~~-----e~~-----vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~ 487 (794)
+|..+. +.+ ...+...++.+.+.+.. ....|++|||+|.+. ....+.|+..++..
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt----------~~a~naLLk~LEep 146 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT----------KEAFNALLKTLEEP 146 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC----------HHHHHHHHHHHhcC
Confidence 111110 000 11233446666555543 345699999999884 35678888888753
Q ss_pred ccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHH-------HHHHHH
Q 003807 488 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIAR-------DLANLV 559 (794)
Q Consensus 488 ~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~-dvdl~~IAr-------DL~nlv 559 (794)
...+++|.+|+.++.+.+++.+ |+ ..+.|++|+..+...+++.+++..++.- +..+..++. ++.+++
T Consensus 147 --p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 147 --PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred --CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445666667778888888887 65 4789999999999999999887665432 233455554 444444
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 560 NIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 560 n~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+.+... +...||.++++.++
T Consensus 222 dkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 222 DQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHh----cCCCcCHHHHHHHh
Confidence 444332 34578888887754
No 109
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.53 E-value=1.9e-13 Score=145.69 Aligned_cols=177 Identities=23% Similarity=0.251 Sum_probs=124.3
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------EE
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------FF 420 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------fi 420 (794)
.|..+..+.+|+|++|++.+++.|+..+. +...| ++|||||||||||+.|+++|++++.| +.
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~-----------~~~lp-~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALL-----------RRILP-HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHh-----------hcCCc-eEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 35667788899999999999999987765 22334 79999999999999999999999763 23
Q ss_pred EEeCcchhhhhhhhhhHHHHHHHHHHHh------CCC----eEEEEcCcccccccccccccchHHHHHHHHHhhhccccC
Q 003807 421 YRAGSEFEEMFVGVGARRVRSLFQAAKK------KAP----CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN 490 (794)
Q Consensus 421 ~is~se~~e~~vG~~~~~vr~lF~~Ar~------~aP----~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~ 490 (794)
..+.++....-+ ...+++. |.+... ..| .|++|||.|.+. ..+.+.|.+.|+.+...
T Consensus 93 ~lnaSderGisv--vr~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt----------sdaq~aLrr~mE~~s~~ 159 (346)
T KOG0989|consen 93 ELNASDERGISV--VREKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMT----------SDAQAALRRTMEDFSRT 159 (346)
T ss_pred hhcccccccccc--hhhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhh----------HHHHHHHHHHHhccccc
Confidence 334454433221 1122211 222211 112 599999999994 47888999999986554
Q ss_pred CcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHH
Q 003807 491 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVKAIAR 553 (794)
Q Consensus 491 ~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~d-vdl~~IAr 553 (794)
+++|..||..+.|...+.+ |. ..+.|+..+.+.....|+....+..+.-+ -.+..|+.
T Consensus 160 --trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~ 218 (346)
T KOG0989|consen 160 --TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAK 218 (346)
T ss_pred --eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5666778999999888887 65 45677777777778888887776665432 23555665
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=4.3e-13 Score=154.84 Aligned_cols=196 Identities=20% Similarity=0.273 Sum_probs=138.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------ 418 (794)
...+.+|+||+|++.+++.|+..+. .+++|..+|||||||+|||++|+++|+.+.++
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 3456799999999999999988775 35678888999999999999999999987431
Q ss_pred ------------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHH
Q 003807 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (794)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~ 482 (794)
++.++++. ..+...++++...... ....|++|||+|.+. ...+|.||.
T Consensus 76 ~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt----------~~A~NALLK 139 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT----------KEAFNALLK 139 (535)
T ss_pred HHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------HHHHHHHHH
Confidence 22222211 1123567776655432 123599999999983 467889999
Q ss_pred hhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHH-
Q 003807 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLA- 556 (794)
Q Consensus 483 eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~- 556 (794)
.|+.. ...+.+|.+|+.+..|.+++++ |. .+++|.+++.++....++..++..+.. ++..+..|++ +++
T Consensus 140 ~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~ 214 (535)
T PRK08451 140 TLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRD 214 (535)
T ss_pred HHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHH
Confidence 99864 3446666677778999999988 64 689999999999999998888765443 3344556666 444
Q ss_pred --HHHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 557 --NLVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 557 --nlvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
+++..+...+ ...||.+++...
T Consensus 215 alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 215 TLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 4444444332 346777776644
No 111
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3.6e-13 Score=157.02 Aligned_cols=202 Identities=18% Similarity=0.225 Sum_probs=137.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEEE-e
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYR-A 423 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-------fi~i-s 423 (794)
..+.+|+||+|++.+++.|+..+. .+++|..+|||||||+|||++|+++|+.++++ +-.+ +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 345689999999999999887776 34577789999999999999999999998652 1111 0
Q ss_pred Ccchhh-------hhhh---hhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc
Q 003807 424 GSEFEE-------MFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ 489 (794)
Q Consensus 424 ~se~~e-------~~vG---~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~ 489 (794)
|..+.. .+-| .+...++++.+.+.. ....|++|||+|.+. ...+|.||..++. +
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls----------~~a~naLLK~LEe--p 146 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS----------NSAFNALLKTIEE--P 146 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC----------HHHHHHHHHhhcc--C
Confidence 000000 0011 223456665544432 345699999999983 3578889988884 4
Q ss_pred CCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHH
Q 003807 490 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNI 561 (794)
Q Consensus 490 ~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~ 561 (794)
...+++|.+|+.++.|.+++++ |+ ..+.|.+++.++..++++..++..... ++..+..|++ ++.++++.
T Consensus 147 p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdk 223 (563)
T PRK06647 147 PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQ 223 (563)
T ss_pred CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5567777888888899999987 66 468999999999999998887655433 2334555555 44444444
Q ss_pred HHHHHHHhCCCCCcHHHHHHHH
Q 003807 562 AAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 562 Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+... ....|+.+++..++
T Consensus 224 lis~----~~~~It~e~V~~ll 241 (563)
T PRK06647 224 VVSF----SDSDITLEQIRSKM 241 (563)
T ss_pred HHhh----cCCCCCHHHHHHHh
Confidence 4332 23568887776643
No 112
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.52 E-value=7.8e-13 Score=142.15 Aligned_cols=203 Identities=22% Similarity=0.277 Sum_probs=133.9
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEEE
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFY 421 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag-----~pfi~ 421 (794)
.|.+...+.+|+|++|++++++.|...+. . ...| +++|+||||||||++++++++++. .+++.
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~---~--------~~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVK---E--------KNMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHh---C--------CCCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 45566677899999999999988877664 1 2233 589999999999999999999873 34555
Q ss_pred EeCcchhhhhhhhhhHHHHHHHHHHHh------CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEE
Q 003807 422 RAGSEFEEMFVGVGARRVRSLFQAAKK------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 495 (794)
Q Consensus 422 is~se~~e~~vG~~~~~vr~lF~~Ar~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIV 495 (794)
+++++... ...+++.+..... ..+.+|+|||+|.+.. ...+.|+..++....+ ..+
T Consensus 74 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----------~~~~~L~~~le~~~~~--~~l 135 (319)
T PRK00440 74 LNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS----------DAQQALRRTMEMYSQN--TRF 135 (319)
T ss_pred eccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------HHHHHHHHHHhcCCCC--CeE
Confidence 55443211 1112222222211 2356999999999843 2345566666654433 345
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHHHHHhC
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIKAAVDG 570 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~ 570 (794)
|.++|.+..+.+++.+ |+. ++.+++|+.++...+++.++++..+. ++..+..+++ |++.+++.....+..
T Consensus 136 Il~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~-- 210 (319)
T PRK00440 136 ILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-- 210 (319)
T ss_pred EEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--
Confidence 5567777777777876 654 58999999999999999988765542 2334555555 555555555433332
Q ss_pred CCCCcHHHHHHHHH
Q 003807 571 GEKLTATELEFAKD 584 (794)
Q Consensus 571 ~~~It~~dl~~Ai~ 584 (794)
...||.+++..+..
T Consensus 211 ~~~it~~~v~~~~~ 224 (319)
T PRK00440 211 GKEVTEEAVYKITG 224 (319)
T ss_pred CCCCCHHHHHHHhC
Confidence 36799999887653
No 113
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=152.28 Aligned_cols=207 Identities=14% Similarity=0.216 Sum_probs=135.1
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE----------
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF---------- 420 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi---------- 420 (794)
...+.+|++|+|++.+++.|+..+. .+++|..+||+||||+|||++|+++|+++.+.-.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 3455689999999999998877766 4578888999999999999999999999976310
Q ss_pred EEeCcch------h-------hhhhh---hhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHH
Q 003807 421 YRAGSEF------E-------EMFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 480 (794)
Q Consensus 421 ~is~se~------~-------e~~vG---~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqL 480 (794)
.-.|... . ..+.+ .+...++++.+.+.. ....|++|||+|.+.. ..++.|
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------~~~~~L 147 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------AAFNAF 147 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------HHHHHH
Confidence 0011110 0 00111 123556666555532 2235999999999842 456778
Q ss_pred HHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HH
Q 003807 481 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DL 555 (794)
Q Consensus 481 L~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL 555 (794)
+..++. +....++|.+|+.+..+-+++.+ |+ ..++|++++.++....++..++..... ++..+..++. ++
T Consensus 148 Lk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~l 222 (397)
T PRK14955 148 LKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSM 222 (397)
T ss_pred HHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 888874 33345555666767788888876 55 478999999999988888877654432 2333444544 44
Q ss_pred HHH---HHHHHHHHHH-hCCCCCcHHHHHHHH
Q 003807 556 ANL---VNIAAIKAAV-DGGEKLTATELEFAK 583 (794)
Q Consensus 556 ~nl---vn~Aal~Aa~-~~~~~It~~dl~~Ai 583 (794)
..+ ++.+...+.. .....|+.++++..+
T Consensus 223 r~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 223 RDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 444 4433333321 234678888887665
No 114
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.5e-13 Score=156.54 Aligned_cols=166 Identities=27% Similarity=0.448 Sum_probs=128.0
Q ss_pred ccccCCHHHHHHHHHHHHH--hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh-------
Q 003807 358 KDVKGCDDAKQELVEVVEY--LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE------- 428 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~--Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~------- 428 (794)
+|-.|++++|+++.|++.- |+.. ...+-++|+||||+|||+++|+||+.+|..|+.++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 4779999999999887664 3332 2234688999999999999999999999999999876553
Q ss_pred --hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHH------hhhcc----ccCCcEEEE
Q 003807 429 --EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV------EMDGF----EQNEGIILM 496 (794)
Q Consensus 429 --e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~------eLDg~----~~~~~VIVI 496 (794)
..|+|....++-+.++...-..| +++|||||.+|+. ..+.....+..+|. .+|.+ -.-++|++|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g---~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG---HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC---CCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 24899999999999988888887 8889999999842 12223333333331 11211 122469999
Q ss_pred EEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 497 aATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
||+|..+.|+++|+. |+ ..|+++-+..++..+|.+.|+-
T Consensus 559 cTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 999999999999987 77 5899999999999999999883
No 115
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.51 E-value=1.7e-13 Score=148.24 Aligned_cols=154 Identities=30% Similarity=0.414 Sum_probs=109.1
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEEeCcchh
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEFE 428 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p---fi~is~se~~ 428 (794)
-.+.+++|.+|++....+ ..++..+-. -.++| .++||||||||||+|||.|+.....+ |+.++..
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ie-------q~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt--- 199 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIE-------QNRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT--- 199 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHH-------cCCCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc---
Confidence 345689999999987554 223322111 13455 79999999999999999999988766 6766653
Q ss_pred hhhhhhhhHHHHHHHHHHHh-----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC-CC
Q 003807 429 EMFVGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN-LP 502 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN-~p 502 (794)
....+.+|++|+++++ ....|||||||+.+... .+..||-.++ +..|++|++|. .|
T Consensus 200 ----~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks----------QQD~fLP~VE----~G~I~lIGATTENP 261 (554)
T KOG2028|consen 200 ----NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS----------QQDTFLPHVE----NGDITLIGATTENP 261 (554)
T ss_pred ----ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh----------hhhcccceec----cCceEEEecccCCC
Confidence 2345678999999875 34579999999999542 2233443333 56688887663 44
Q ss_pred -CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 503 -DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 503 -~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
-.|..+|++ |+ +++.+.....+.-..||.+.+.
T Consensus 262 SFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 262 SFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred ccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHH
Confidence 368889998 54 6688888888999999987543
No 116
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.3e-13 Score=156.59 Aligned_cols=204 Identities=15% Similarity=0.205 Sum_probs=136.0
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE----EeCc
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY----RAGS 425 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~----is~s 425 (794)
....+.+|++++|++++++.|...+. ..+.+.++||+||||||||++|+++|+.+++.... -.|.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~-----------~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALI-----------SNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 34556799999999999999988776 23456689999999999999999999998763110 0111
Q ss_pred --------------chh--hhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhh
Q 003807 426 --------------EFE--EMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD 485 (794)
Q Consensus 426 --------------e~~--e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLD 485 (794)
++. +...+.+...+|++...+.. ....|++|||+|.|. ....+.||..|+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt----------~~a~naLLK~LE 146 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS----------TAAFNALLKTLE 146 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC----------HHHHHHHHHHHh
Confidence 010 11122345678888877653 234699999999993 357788999998
Q ss_pred ccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHH
Q 003807 486 GFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVN 560 (794)
Q Consensus 486 g~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn 560 (794)
. +...+++|.+|+.++.+-+.|++ |+ ..+.|+.++.++....++..+.+.... +...+..+++ ++..+.+
T Consensus 147 e--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 147 E--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred c--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4 44567777788888888889887 65 668898898888888777766654332 2223445554 3433333
Q ss_pred HHHHHHHHhCCCCCcHHHHHH
Q 003807 561 IAAIKAAVDGGEKLTATELEF 581 (794)
Q Consensus 561 ~Aal~Aa~~~~~~It~~dl~~ 581 (794)
.....+... ..|+.+++..
T Consensus 222 lLeklsL~~--~~It~e~V~~ 240 (620)
T PRK14948 222 LLDQLSLLP--GPITPEAVWD 240 (620)
T ss_pred HHHHHHhcc--CCCCHHHHHH
Confidence 322222211 3466666553
No 117
>PRK08727 hypothetical protein; Validated
Probab=99.50 E-value=1.3e-12 Score=136.65 Aligned_cols=172 Identities=24% Similarity=0.316 Sum_probs=110.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ 468 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~ 468 (794)
..++|+||+|||||+|++|++.++ +....+++..++.. .+.+.++... ...+|+|||+|.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 469999999999999999997764 66677777655432 2333444443 346999999999865321
Q ss_pred cccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC---ChhhcCCCcc--ceEEEccCCCHHHHHHHHHHHhccCCCC
Q 003807 469 WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL---DPALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA 543 (794)
Q Consensus 469 ~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L---D~ALlRpGRF--dr~I~V~lPd~~eR~eILk~~l~~~~l~ 543 (794)
....+..++..+ ..+..-+|+++...|..+ +++|.+ || ..++.++.|+.+++.+|++.++....+.
T Consensus 111 ----~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~ 181 (233)
T PRK08727 111 ----DEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLA 181 (233)
T ss_pred ----HHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 123333444333 222333444455566654 788988 86 5588999999999999999877654433
Q ss_pred -CcccHHHHHH----HHH---HHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 003807 544 -DDVDVKAIAR----DLA---NLVNIAAIKAAVDGGEKLTATELEFAKD 584 (794)
Q Consensus 544 -~dvdl~~IAr----DL~---nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ 584 (794)
++..+..|++ |++ ++++.....+...+ +.||...+++.+.
T Consensus 182 l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 182 LDEAAIDWLLTHGERELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 2333555655 443 44555543344434 5788888877664
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=8.1e-13 Score=150.62 Aligned_cols=183 Identities=17% Similarity=0.285 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCcchhhhhhhhhh---HHHHHHHHHHHhCCCeEEEEcCccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGA---RRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~se~~e~~vG~~~---~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
.+++|||++|||||+|++|+++++ +..++++++.+|...+..... ..+..+.+.. ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 479999999999999999999854 577889999888766543322 1222222222 245799999999986
Q ss_pred ccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC---CChhhcCCCccce--EEEccCCCHHHHHHHHHHHhc
Q 003807 464 STRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI---LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 464 ~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~---LD~ALlRpGRFdr--~I~V~lPd~~eR~eILk~~l~ 538 (794)
++. .+...|...++......+.+||++...|.. +++.|.+ ||.. .+.+.+|+.++|.+|++..++
T Consensus 220 ~k~--------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 220 YKE--------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred CCH--------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 532 233333333333333344455555555543 5788887 8864 788999999999999999997
Q ss_pred cCCCC---CcccHHHHHH-------HHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHH
Q 003807 539 DKPLA---DDVDVKAIAR-------DLANLVNIAAIKAAVDG-GEKLTATELEFAKDRI 586 (794)
Q Consensus 539 ~~~l~---~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~-~~~It~~dl~~Ai~ri 586 (794)
...+. ++.-+..||. .+.++++++...+.... ...||.+.+++++..+
T Consensus 290 ~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 290 NQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred hcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 65431 2223445554 77888888875555542 3689999999998775
No 119
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.50 E-value=2.8e-13 Score=148.78 Aligned_cols=209 Identities=25% Similarity=0.338 Sum_probs=129.9
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEe--C
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRA--G 424 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-------g~pfi~is--~ 424 (794)
+..|++|+|++++++.|.-.+- ++ | -.++||+||||||||++||++++-+ ++|+-..+ +
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~---~~------~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI---DP------G---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh---cc------C---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 4579999999999888753221 11 1 1379999999999999999999987 33322111 0
Q ss_pred -cch---------------hhhhhhhhhHHHHH--HHHHH--------H-----hCCCeEEEEcCcccccccccccccch
Q 003807 425 -SEF---------------EEMFVGVGARRVRS--LFQAA--------K-----KKAPCIIFIDEIDAVGSTRKQWEGHT 473 (794)
Q Consensus 425 -se~---------------~e~~vG~~~~~vr~--lF~~A--------r-----~~aP~ILfIDEIDaL~~~r~~~~~~~ 473 (794)
.++ ...-.+.+..++-. .++.+ + .....+||||||+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~---------- 141 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE---------- 141 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC----------
Confidence 000 00001111110100 00111 0 0112499999999984
Q ss_pred HHHHHHHHHhhhccc-----------cCCcEEEEEEcCCCC-CCChhhcCCCccceEEEccCCCH-HHHHHHHHHHhccC
Q 003807 474 KKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPDV-RGRQEILELYLQDK 540 (794)
Q Consensus 474 ~~~LnqLL~eLDg~~-----------~~~~VIVIaATN~p~-~LD~ALlRpGRFdr~I~V~lPd~-~eR~eILk~~l~~~ 540 (794)
..+++.|+..|+.-. ....+++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++......
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~~~ 219 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDAYD 219 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhccc
Confidence 356667777665321 235689999988654 58899998 9999999998876 89999998754321
Q ss_pred C----C------CCcccHHHHHH--------------------------------HHHHHHHHHHHHHHHhCCCCCcHHH
Q 003807 541 P----L------ADDVDVKAIAR--------------------------------DLANLVNIAAIKAAVDGGEKLTATE 578 (794)
Q Consensus 541 ~----l------~~dvdl~~IAr--------------------------------DL~nlvn~Aal~Aa~~~~~~It~~d 578 (794)
. . ......+.|.. ++. +++.|...|+.+|++.|+.+|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~~D 298 (334)
T PRK13407 220 ADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGRSH 298 (334)
T ss_pred ccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCHHH
Confidence 1 0 01111122211 333 778888899999999999999
Q ss_pred HHHHHHHHh
Q 003807 579 LEFAKDRIL 587 (794)
Q Consensus 579 l~~Ai~ri~ 587 (794)
+..+..-++
T Consensus 299 i~~~~~~vl 307 (334)
T PRK13407 299 LRSVATMAL 307 (334)
T ss_pred HHHHHHHhh
Confidence 987765443
No 120
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.50 E-value=1.1e-12 Score=137.38 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=120.1
Q ss_pred CCCccccc-C-CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh
Q 003807 354 VKTFKDVK-G-CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 428 (794)
Q Consensus 354 ~~tFdDVv-G-~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~ 428 (794)
..+|++.+ | +..+...+..+.. .+ .+..++||||||||||+|++++++++ |..+.+++.....
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 34788877 4 4455544444332 11 12379999999999999999999876 4455666654432
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCc-EEEEEEcCCCCC---
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG-IILMAATNLPDI--- 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~-VIVIaATN~p~~--- 504 (794)
.. ..++++.... ..+|+|||+|.+.++. ..+..+..+++.+ ..+.+ .+++++++.|..
T Consensus 86 ~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 86 WF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----LWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred hh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----HHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCc
Confidence 21 1122222222 2589999999986532 1223333343332 22333 355566666655
Q ss_pred CChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCCCC
Q 003807 505 LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGEKL 574 (794)
Q Consensus 505 LD~ALlRpGRFd--r~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~I 574 (794)
+.+.|++ |+. .++.+.+|+.+++.++++..+....+. ++.-++.|++ .+.++++.... +.....+.|
T Consensus 148 ~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~-~~l~~~~~i 224 (235)
T PRK08084 148 GLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDR-ASITAQRKL 224 (235)
T ss_pred ccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHH-HHHhcCCCC
Confidence 5789988 776 689999999999999999866654433 2233455555 56666666432 333344668
Q ss_pred cHHHHHHHH
Q 003807 575 TATELEFAK 583 (794)
Q Consensus 575 t~~dl~~Ai 583 (794)
|...+++++
T Consensus 225 t~~~~k~~l 233 (235)
T PRK08084 225 TIPFVKEIL 233 (235)
T ss_pred CHHHHHHHH
Confidence 888877764
No 121
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.50 E-value=2e-12 Score=137.46 Aligned_cols=131 Identities=24% Similarity=0.262 Sum_probs=91.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh--hhhhh----hhHHHH---------------------HHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE--MFVGV----GARRVR---------------------SLFQ 444 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e--~~vG~----~~~~vr---------------------~lF~ 444 (794)
.++||+||||||||++|+++|...|.||+.++|..-.. ..+|. ....+. .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 36999999999999999999999999999998864211 11221 111111 1122
Q ss_pred HHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--------------cCCcEEEEEEcCCCC-----CC
Q 003807 445 AAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------------QNEGIILMAATNLPD-----IL 505 (794)
Q Consensus 445 ~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--------------~~~~VIVIaATN~p~-----~L 505 (794)
.++ .+.+|+|||||.+.+ .+++.|+..|+.-. ...++.||+|+|... .+
T Consensus 102 A~~--~g~~lllDEi~r~~~----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 102 AVR--EGFTLVYDEFTRSKP----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHH--cCCEEEEcchhhCCH----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 222 235999999999743 45555555554311 123677999999763 56
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
+++|++ || ..+.++.|+.++..+|++.+.
T Consensus 170 ~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 170 QDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 889998 88 689999999999999999875
No 122
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=7.8e-13 Score=159.46 Aligned_cols=165 Identities=22% Similarity=0.322 Sum_probs=122.1
Q ss_pred cc-cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh------
Q 003807 357 FK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE------ 429 (794)
Q Consensus 357 Fd-DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e------ 429 (794)
++ |..|++++|+.+.+.+...+.... . ....++|+||||||||++++.+|+.++.+|+.++.+...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~-----~-~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNK-----I-KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhccc-----C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhcc
Confidence 44 489999999999887775433211 1 1236999999999999999999999999999888765432
Q ss_pred ---hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhc-----cc--------cCCcE
Q 003807 430 ---MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FE--------QNEGI 493 (794)
Q Consensus 430 ---~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg-----~~--------~~~~V 493 (794)
.|.|.....+...+..+....| ||+|||||.++.... + .....|+..+|. |. .-+++
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~---g---~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR---G---DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC---C---CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 3566666666666666554444 899999999976421 1 234455555552 11 12679
Q ss_pred EEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 494 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 494 IVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
++|+|+|.. .|+++|+. || ..|.+..++.++..+|.+.|+.
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhh
Confidence 999999987 59999998 99 4789999999999999999884
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.4e-12 Score=153.42 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=137.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE----------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY---------- 421 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~---------- 421 (794)
..+.+|++|+|++.+++.|+..+. .+++|.++||+||||||||++|+++|+.+++.--.
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 345689999999999999887665 45788899999999999999999999999773100
Q ss_pred EeCcch---hh----------hhhh---hhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHH
Q 003807 422 RAGSEF---EE----------MFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (794)
Q Consensus 422 is~se~---~e----------~~vG---~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL 481 (794)
-.|... .. .+.+ .+...++++.+.+.. ....|++|||+|.+. ....+.||
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt----------~~a~naLL 148 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS----------TAAFNAFL 148 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC----------HHHHHHHH
Confidence 011111 00 0111 124566666655532 234699999999984 34678899
Q ss_pred HhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHH
Q 003807 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLA 556 (794)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~ 556 (794)
..|+.. ...+++|.+|+.+..|-+.+.+ |. ..+.|..++.++....++..++..+.. ++..+..|+. ++.
T Consensus 149 K~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 149 KTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 888853 3345666666777888888886 44 679999999999888888877654432 3334555555 455
Q ss_pred HHHHHHHHHHHH----hCCCCCcHHHHHHHH
Q 003807 557 NLVNIAAIKAAV----DGGEKLTATELEFAK 583 (794)
Q Consensus 557 nlvn~Aal~Aa~----~~~~~It~~dl~~Ai 583 (794)
.++++......- .....|+.+++...+
T Consensus 224 ~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 224 DAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 444443322222 124678888776654
No 124
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=1.1e-12 Score=147.82 Aligned_cols=133 Identities=29% Similarity=0.370 Sum_probs=89.3
Q ss_pred CCccc-ccCCHHHHHHHHHHHHH-hcCchhhhh--cCCC-CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 355 KTFKD-VKGCDDAKQELVEVVEY-LKNPSKFTR--LGGK-LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 355 ~tFdD-VvG~deaK~eL~eiV~~-Lk~p~~~~~--lG~~-~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
..+++ |+|++++|+.|...+.. ++.-..... -... ...++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 34654 89999999999765532 221110000 0111 2368999999999999999999999999999999988753
Q ss_pred -hhhhhhhHH-HHHHHHHH----HhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhcc
Q 003807 430 -MFVGVGARR-VRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGF 487 (794)
Q Consensus 430 -~~vG~~~~~-vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~ 487 (794)
.|+|..... +..++..+ ....++||||||||.+..++...+ -....+++.||..||+-
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcC
Confidence 577765433 34444332 234678999999999987532111 11245778888888763
No 125
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.47 E-value=2.3e-12 Score=151.97 Aligned_cols=210 Identities=20% Similarity=0.253 Sum_probs=127.1
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEE
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFF 420 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi 420 (794)
...+.+|++++|++.+.+.+...+ .. ..|.+++|+||||||||++|+++++.. +.+|+
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~i---a~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKV---AS---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHH---hc---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 334568999999999887764433 21 224579999999999999999998755 46799
Q ss_pred EEeCcchhh-------hhhhhhhH----HHHHHHHH----------HHhCCCeEEEEcCcccccccccccccchHHHHHH
Q 003807 421 YRAGSEFEE-------MFVGVGAR----RVRSLFQA----------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 479 (794)
Q Consensus 421 ~is~se~~e-------~~vG~~~~----~vr~lF~~----------Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~Lnq 479 (794)
.++|..+.. ...|.... ..+..+.. .......+|||||++.|.. ..+..
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~----------~~Q~~ 284 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP----------LLQNK 284 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH----------HHHHH
Confidence 999876521 11121110 01111110 0011245999999998843 33344
Q ss_pred HHHhhhccc--------------------------cCCcEEEEE-EcCCCCCCChhhcCCCccceEEEccCCCHHHHHHH
Q 003807 480 LLVEMDGFE--------------------------QNEGIILMA-ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEI 532 (794)
Q Consensus 480 LL~eLDg~~--------------------------~~~~VIVIa-ATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eI 532 (794)
|+..|+.-. ....+++|+ ||+.++.++++|++ ||. .+.+++++.+++..|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 444443210 122356665 45678889999987 885 568889999999999
Q ss_pred HHHHhccCCCC-CcccHHHHHH------HHHHHHHHHHHHHHH--------hCCCCCcHHHHHHHHHH
Q 003807 533 LELYLQDKPLA-DDVDVKAIAR------DLANLVNIAAIKAAV--------DGGEKLTATELEFAKDR 585 (794)
Q Consensus 533 Lk~~l~~~~l~-~dvdl~~IAr------DL~nlvn~Aal~Aa~--------~~~~~It~~dl~~Ai~r 585 (794)
++.++...... .+.-+..|++ ...|++..+...+.. .+...|+.+|+++++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTIEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99998765432 1222333433 222333333222211 12336899999888753
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.5e-12 Score=152.84 Aligned_cols=205 Identities=18% Similarity=0.230 Sum_probs=134.3
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE---Ee---C
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY---RA---G 424 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~---is---~ 424 (794)
...+.+|+||+|++.+++.|+..+. ..+.+..+||+||||+|||++|+++|+.+++..-. .. |
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~-----------~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIA-----------EGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 3455699999999999999887775 24567789999999999999999999988642210 00 1
Q ss_pred cc-----------hhhh--hhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc
Q 003807 425 SE-----------FEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (794)
Q Consensus 425 se-----------~~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~ 487 (794)
.. +.+. ....+...++++.+.+.. ....||+|||+|.+. ...++.||..|+..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~----------~~a~naLLk~LEep 147 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS----------TAAFNALLKTLEEP 147 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC----------HHHHHHHHHHHhcC
Confidence 10 0000 001223445555544332 234699999999884 35678888888864
Q ss_pred ccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHH
Q 003807 488 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIA 562 (794)
Q Consensus 488 ~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~A 562 (794)
. ..+++|.+|+..+.+.+.+++ |+ ..+.|+.++..+...+++..+...++. ++..+..|++ ++..+++..
T Consensus 148 p--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 148 P--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred C--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 445666667777778888876 55 468899999999999988887665433 2233455554 444444444
Q ss_pred HHHHHHhCCCCCcHHHHHHH
Q 003807 563 AIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 563 al~Aa~~~~~~It~~dl~~A 582 (794)
...+.. +...|+.++++..
T Consensus 223 ekL~~y-~~~~It~e~V~~l 241 (585)
T PRK14950 223 QQLATT-YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHh-cCCCCCHHHHHHH
Confidence 333332 3457888887654
No 127
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.45 E-value=6.8e-13 Score=151.91 Aligned_cols=200 Identities=21% Similarity=0.292 Sum_probs=150.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEEE-e
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYR-A 423 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-------fi~i-s 423 (794)
.++.+|+|++|++.+...|...+. ..+++.+.||+||.|||||++||.+|+.+++. +..+ +
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~-----------~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALE-----------NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHH-----------hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 345689999999999999988877 35667789999999999999999999998764 2111 1
Q ss_pred C--------cchhh--hhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc
Q 003807 424 G--------SEFEE--MFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ 489 (794)
Q Consensus 424 ~--------se~~e--~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~ 489 (794)
| .++.+ .-...+-+.+|++.+.+.- ....|++|||+|.| +.+..|.||..++ ++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML----------S~~afNALLKTLE--EP 146 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML----------SKQAFNALLKTLE--EP 146 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh----------hHHHHHHHhcccc--cC
Confidence 1 11111 1223355678888777643 34569999999999 3588999999998 46
Q ss_pred CCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHH-------HHHHHHHH
Q 003807 490 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVKAIAR-------DLANLVNI 561 (794)
Q Consensus 490 ~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~d-vdl~~IAr-------DL~nlvn~ 561 (794)
...|++|.||..++.+++.+++ |+ .++.|..-+.++....|+..+.+..+.-+ -.+..||+ |..+++.+
T Consensus 147 P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq 223 (515)
T COG2812 147 PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQ 223 (515)
T ss_pred ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHH
Confidence 7789999999999999999997 54 56789999999999999999987766533 34666766 88888888
Q ss_pred HHHHHHHhCCCCCcHHHHHH
Q 003807 562 AAIKAAVDGGEKLTATELEF 581 (794)
Q Consensus 562 Aal~Aa~~~~~~It~~dl~~ 581 (794)
|..... ..||.+.+..
T Consensus 224 ~i~~~~----~~It~~~v~~ 239 (515)
T COG2812 224 AIAFGE----GEITLESVRD 239 (515)
T ss_pred HHHccC----CcccHHHHHH
Confidence 765532 4555555543
No 128
>PRK05642 DNA replication initiation factor; Validated
Probab=99.43 E-value=5.3e-12 Score=132.19 Aligned_cols=172 Identities=20% Similarity=0.221 Sum_probs=113.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 467 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~ 467 (794)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+..+.. .+|+|||++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh-
Confidence 3579999999999999999998764 6678888887765421 2233333332 589999999885532
Q ss_pred ccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC---ChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCC
Q 003807 468 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL---DPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPL 542 (794)
Q Consensus 468 ~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L---D~ALlRpGRFd--r~I~V~lPd~~eR~eILk~~l~~~~l 542 (794)
.....|+..++.+..+...++|+++..|..+ .+.|.+ ||. ..+.+..|+.++|.++++..+....+
T Consensus 114 -------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 114 -------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred -------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 2223344444444445567778777766543 678887 774 57888999999999999966654433
Q ss_pred C-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 543 A-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 543 ~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
. ++.-++.|++ .+.++++.-.. ++...++.||..-+++++
T Consensus 185 ~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~-~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 185 HLTDEVGHFILTRGTRSMSALFDLLERLDQ-ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHcCCcCCHHHHHHHh
Confidence 2 2333455555 55566665543 333344678887777654
No 129
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=6e-12 Score=148.31 Aligned_cols=199 Identities=18% Similarity=0.228 Sum_probs=138.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 418 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------- 418 (794)
..+.+|+||+|++.+++.|...+. .+++|..+|||||+|+|||++|+++|+.+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 345689999999999998887775 35678889999999999999999999988642
Q ss_pred ------------EEEEeCcchhhhhhhhhhHHHHHHHHHHHhC----CCeEEEEcCcccccccccccccchHHHHHHHHH
Q 003807 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (794)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~ 482 (794)
++.+++.+ ..+...++++...+... ...|++|||+|.+. ....+.|+.
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls----------~~a~naLLK 143 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS----------QAAFNAFLK 143 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC----------HHHHHHHHH
Confidence 12222110 11235567776666432 23599999999993 356888998
Q ss_pred hhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHH----HHHH
Q 003807 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIAR----DLAN 557 (794)
Q Consensus 483 eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~-dvdl~~IAr----DL~n 557 (794)
.|+.. ....++|.+|+.+..|-+.|++ |+ ..+.|..++..+....++..+...++.- ...+..|+. |+..
T Consensus 144 ~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 144 TLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred HHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 88853 3455666677777888889887 55 5699999999999999988887665442 233566666 5655
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 558 LVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 558 lvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+++.....+...+.. |+.+++...+
T Consensus 219 al~~Lekl~~y~~~~-It~~~V~~~l 243 (614)
T PRK14971 219 ALSIFDQVVSFTGGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHhccCC-ccHHHHHHHh
Confidence 555543333333333 7776665443
No 130
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.43 E-value=2.6e-12 Score=133.28 Aligned_cols=168 Identities=23% Similarity=0.368 Sum_probs=106.3
Q ss_pred CCCccccc-C--CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 003807 354 VKTFKDVK-G--CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 425 (794)
Q Consensus 354 ~~tFdDVv-G--~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~s 425 (794)
.-||++.+ | +..+...++.+.+ ++. ..-..++||||+|+|||+|.+|+++++ +..++++++.
T Consensus 4 ~~tFdnfv~g~~N~~a~~~~~~ia~---~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYAAAKAIAE---NPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp T-SCCCS--TTTTHHHHHHHHHHHH---STT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred CCccccCCcCCcHHHHHHHHHHHHh---cCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 35899875 4 3334433333333 221 122369999999999999999999875 5779999999
Q ss_pred chhhhhhhhhhH-HHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 426 EFEEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 426 e~~e~~vG~~~~-~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
+|...+...... .+.++.+..+ ...+|+||++|.+..+ ..+...|...++.+....+.+||++...|..
T Consensus 74 ~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~--------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 74 EFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK--------QRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH--------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred HHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc--------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 987765433222 2223323333 3469999999999653 2344555555555555666777777777765
Q ss_pred C---ChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC
Q 003807 505 L---DPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA 543 (794)
Q Consensus 505 L---D~ALlRpGRFdr--~I~V~lPd~~eR~eILk~~l~~~~l~ 543 (794)
+ ++.|.+ ||.. .+.+..|+.+.|.+|++..+....+.
T Consensus 144 l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~ 185 (219)
T PF00308_consen 144 LSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIE 185 (219)
T ss_dssp TTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred ccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 4 677776 7765 88999999999999999998876654
No 131
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=8.1e-12 Score=138.95 Aligned_cols=208 Identities=22% Similarity=0.301 Sum_probs=147.9
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----EEEEeCcchhhhh---
Q 003807 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-----FFYRAGSEFEEMF--- 431 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-----fi~is~se~~e~~--- 431 (794)
+.+.++..+.+..++...- .+..|.++++|||||||||.+++.++.++.-+ ++++||....+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~--------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 19 LPHREEEINQLASFLAPAL--------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred ccccHHHHHHHHHHHHHHh--------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 7888988888877655322 23455679999999999999999999988443 8999998764432
Q ss_pred ------------hhhhh-HHHHHHHHHHHh-CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEE
Q 003807 432 ------------VGVGA-RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 497 (794)
Q Consensus 432 ------------vG~~~-~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIa 497 (794)
.|... +....+++.... ...-||+|||+|.|..+.+ ..+..|+...+.. ..+|.+|+
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~--~~~v~vi~ 161 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN--KVKVSIIA 161 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc--ceeEEEEE
Confidence 11111 122223333322 4567999999999976432 6777887766544 56789999
Q ss_pred EcCCCC---CCChhhcCCCccc-eEEEccCCCHHHHHHHHHHHhccCCCCCcc---cHHHHHH----------HHHHHHH
Q 003807 498 ATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDKPLADDV---DVKAIAR----------DLANLVN 560 (794)
Q Consensus 498 ATN~p~---~LD~ALlRpGRFd-r~I~V~lPd~~eR~eILk~~l~~~~l~~dv---dl~~IAr----------DL~nlvn 560 (794)
.+|..+ .+|+.+.+ +|. ..|.||+++.++...|++...+.......+ -++.+|. -...+++
T Consensus 162 i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 162 VSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred EeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 999764 67888876 443 368999999999999999988653222222 2333332 4457889
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 561 IAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 561 ~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
.|+..|.+++...++.+++..|.+.+
T Consensus 240 ~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 240 RAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 99999999999999999999995544
No 132
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.42 E-value=2.7e-12 Score=141.61 Aligned_cols=211 Identities=22% Similarity=0.282 Sum_probs=131.9
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCc-
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGS- 425 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-------g~pfi~is~s- 425 (794)
...|++|+|++++|..|.-.+. +| ...|+||.||+|||||++||+++.-+ +.||. ....
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~---~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVI---DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhcc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCC
Confidence 4579999999999988854332 22 22489999999999999999997755 23443 1100
Q ss_pred ------chhh-------------------hhhhhhhHHH------HHHHHHHH---------hCCCeEEEEcCccccccc
Q 003807 426 ------EFEE-------------------MFVGVGARRV------RSLFQAAK---------KKAPCIIFIDEIDAVGST 465 (794)
Q Consensus 426 ------e~~e-------------------~~vG~~~~~v------r~lF~~Ar---------~~aP~ILfIDEIDaL~~~ 465 (794)
++.. .-.|.+..++ ...|.... .....+||||||+.+..
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~- 158 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD- 158 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH-
Confidence 0000 0011122211 11111111 11135999999999954
Q ss_pred ccccccchHHHHHHHHHhhhc---------c--ccCCcEEEEEEcCCCC-CCChhhcCCCccceEEEccCCC-HHHHHHH
Q 003807 466 RKQWEGHTKKTLHQLLVEMDG---------F--EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPD-VRGRQEI 532 (794)
Q Consensus 466 r~~~~~~~~~~LnqLL~eLDg---------~--~~~~~VIVIaATN~p~-~LD~ALlRpGRFdr~I~V~lPd-~~eR~eI 532 (794)
.++..|+..|+. . ....++++|++.|..+ .+.++++. ||...+.+..|+ .+.+.+|
T Consensus 159 ---------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 159 ---------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred ---------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHH
Confidence 456667766643 1 1234688888888655 58999998 999999999998 5999999
Q ss_pred HHHHhccC--CC--------CCcccHHHHHH-------------------------------HHHHHHHHHHHHHHHhCC
Q 003807 533 LELYLQDK--PL--------ADDVDVKAIAR-------------------------------DLANLVNIAAIKAAVDGG 571 (794)
Q Consensus 533 Lk~~l~~~--~l--------~~dvdl~~IAr-------------------------------DL~nlvn~Aal~Aa~~~~ 571 (794)
++...... +. ...+....|.. --..+++-|...|+.+|+
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR 307 (350)
T CHL00081 228 VEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGR 307 (350)
T ss_pred HHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCC
Confidence 98754311 00 01111222211 112345556677888899
Q ss_pred CCCcHHHHHHHHHHHhcc
Q 003807 572 EKLTATELEFAKDRILMG 589 (794)
Q Consensus 572 ~~It~~dl~~Ai~ri~~g 589 (794)
..|+.+|+..+..-++.-
T Consensus 308 ~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 308 TEVTPKDIFKVITLCLRH 325 (350)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999888766543
No 133
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.41 E-value=1.5e-12 Score=145.65 Aligned_cols=172 Identities=30% Similarity=0.422 Sum_probs=124.3
Q ss_pred ccCCHHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh-hhhh-hh
Q 003807 360 VKGCDDAKQELVEVVEY-LKNPSKFTRL-GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVG-VG 435 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~-Lk~p~~~~~l-G~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e-~~vG-~~ 435 (794)
|+|++++|+.+...+.. .+.......+ ....|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 89999999999765552 1211111111 1235789999999999999999999999999999999987764 5777 45
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 003807 436 ARRVRSLFQAAK-------------------------------------------------------------------- 447 (794)
Q Consensus 436 ~~~vr~lF~~Ar-------------------------------------------------------------------- 447 (794)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 566666665550
Q ss_pred -----------------------------------------------------------------------hCCCeEEEE
Q 003807 448 -----------------------------------------------------------------------KKAPCIIFI 456 (794)
Q Consensus 448 -----------------------------------------------------------------------~~aP~ILfI 456 (794)
...-.||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012349999
Q ss_pred cCccccccccccc--ccchHHHHHHHHHhhhccc--------cCCcEEEEEEcC----CCCCCChhhcCCCccceEEEcc
Q 003807 457 DEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFE--------QNEGIILMAATN----LPDILDPALTRPGRFDRHIVVP 522 (794)
Q Consensus 457 DEIDaL~~~r~~~--~~~~~~~LnqLL~eLDg~~--------~~~~VIVIaATN----~p~~LD~ALlRpGRFdr~I~V~ 522 (794)
||||.++.+.... +-....+++.||..++|-. ...+|++|++-- .|.+|=|.|. |||..++.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 9999998764221 1223557788998888742 235688887654 4556667776 6999999999
Q ss_pred CCCHHHHHHHH
Q 003807 523 NPDVRGRQEIL 533 (794)
Q Consensus 523 lPd~~eR~eIL 533 (794)
.++.++...||
T Consensus 332 ~L~~edL~rIL 342 (441)
T TIGR00390 332 ALTTDDFERIL 342 (441)
T ss_pred CCCHHHHHHHh
Confidence 99999999887
No 134
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.40 E-value=1.4e-11 Score=137.76 Aligned_cols=221 Identities=19% Similarity=0.260 Sum_probs=152.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 425 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~s 425 (794)
-.+.-||++++.-+.-.....-.......|. ..-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 3445689997665544333333333333332 133469999999999999999999877 3458899988
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 426 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.|...++......-.+-|+.-. .-.+++||+|+.+.++. .+...+...+..+....+-||+++...|..+
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~--------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE--------RTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh--------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 8877776554444444555555 33699999999997753 2333333333333445556778887778765
Q ss_pred ---ChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCC
Q 003807 506 ---DPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGE 572 (794)
Q Consensus 506 ---D~ALlRpGRFdr--~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~ 572 (794)
++.|.+ ||.. .+.+.+||.+.|.+||+.......+. ++.-...+|. +|..++++....+...++
T Consensus 223 ~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~- 299 (408)
T COG0593 223 NGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKR- 299 (408)
T ss_pred ccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCc-
Confidence 578887 8877 77889999999999999977665544 2333444554 777888888777776664
Q ss_pred CCcHHHHHHHHHHHhcccc
Q 003807 573 KLTATELEFAKDRILMGTE 591 (794)
Q Consensus 573 ~It~~dl~~Ai~ri~~g~~ 591 (794)
.||.+.+.+++.......+
T Consensus 300 ~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 300 AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred cCcHHHHHHHHHHhhcccc
Confidence 8999999999988766544
No 135
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.40 E-value=6.5e-12 Score=141.37 Aligned_cols=146 Identities=29% Similarity=0.378 Sum_probs=94.6
Q ss_pred Cccc-ccCCHHHHHHHHHHHHH-hcCchh----hhhcCCC-CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 356 TFKD-VKGCDDAKQELVEVVEY-LKNPSK----FTRLGGK-LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 356 tFdD-VvG~deaK~eL~eiV~~-Lk~p~~----~~~lG~~-~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.|++ |+|++++++.+...+.. ++.-.. ....+.. .+.++||+||||||||++|+++|..+++||..+++..+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3444 79999999999776621 111100 0000111 135899999999999999999999999999999988764
Q ss_pred h-hhhhhh-hHHHHHHHHHH----HhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhcccc---------
Q 003807 429 E-MFVGVG-ARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQ--------- 489 (794)
Q Consensus 429 e-~~vG~~-~~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~--------- 489 (794)
. .|+|.. ...+..++..+ ....++||||||||.+..++...+ -....+++.||..|+|...
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence 3 466764 23344444322 234578999999999987543211 1123577778888876421
Q ss_pred --CCcEEEEEEcCC
Q 003807 490 --NEGIILMAATNL 501 (794)
Q Consensus 490 --~~~VIVIaATN~ 501 (794)
....++|.|+|-
T Consensus 234 ~~~~~~i~i~TsNi 247 (413)
T TIGR00382 234 HPYQEFIQIDTSNI 247 (413)
T ss_pred ccCCCeEEEEcCCc
Confidence 124677888775
No 136
>PRK06620 hypothetical protein; Validated
Probab=99.40 E-value=7.2e-12 Score=129.69 Aligned_cols=157 Identities=14% Similarity=0.214 Sum_probs=102.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 471 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~ 471 (794)
..++||||||||||+|++++++..+..++. ..... .+.+ + ...+|+|||||.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-----------~~~~---~--~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-----------EEIL---E--KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc-----------hhHH---h--cCCEEEEeccccch--------
Confidence 579999999999999999999988764332 11110 1111 1 23699999999541
Q ss_pred chHHHHHHHHHhhhccccCCcEEEEEEcCCCCC--CChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC-Ccc
Q 003807 472 HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI--LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDV 546 (794)
Q Consensus 472 ~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~--LD~ALlRpGRFdr--~I~V~lPd~~eR~eILk~~l~~~~l~-~dv 546 (794)
...+..+++.+ ..+.+.++|+++..|.. + ++|++ |+.. ++.+..||.+++..+++.++....+. ++.
T Consensus 99 --~~~lf~l~N~~---~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~e 170 (214)
T PRK06620 99 --EPALLHIFNII---NEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQ 170 (214)
T ss_pred --HHHHHHHHHHH---HhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 12333443333 33456788888877764 5 77877 7753 78999999999999999888754433 233
Q ss_pred cHHHHHH-------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 547 DVKAIAR-------DLANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 547 dl~~IAr-------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
-++.|++ .+.++++.....+.. .++.||...+++++
T Consensus 171 v~~~L~~~~~~d~r~l~~~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 171 IIDFLLVNLPREYSKIIEILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 3445554 566666664433333 34678888877654
No 137
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.40 E-value=2.1e-12 Score=144.43 Aligned_cols=173 Identities=28% Similarity=0.397 Sum_probs=125.9
Q ss_pred ccCCHHHHHHHHHHHHH-hcCchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh-hhhh-hh
Q 003807 360 VKGCDDAKQELVEVVEY-LKNPSKFTRLG-GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVG-VG 435 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~-Lk~p~~~~~lG-~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e-~~vG-~~ 435 (794)
|+|++++|+.+...+.. ++......... ...|+++||+||||||||++|+++|..++.||+.+++++|.+ .|+| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 89999999999776642 22111100111 123689999999999999999999999999999999998876 5877 44
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 003807 436 ARRVRSLFQAAK-------------------------------------------------------------------- 447 (794)
Q Consensus 436 ~~~vr~lF~~Ar-------------------------------------------------------------------- 447 (794)
+..++++|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 566667766661
Q ss_pred --h--------------------------------------------------------------------CCCeEEEEc
Q 003807 448 --K--------------------------------------------------------------------KAPCIIFID 457 (794)
Q Consensus 448 --~--------------------------------------------------------------------~aP~ILfID 457 (794)
. ..-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 022499999
Q ss_pred Cccccccccccc--ccchHHHHHHHHHhhhccc--------cCCcEEEEEEcC----CCCCCChhhcCCCccceEEEccC
Q 003807 458 EIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFE--------QNEGIILMAATN----LPDILDPALTRPGRFDRHIVVPN 523 (794)
Q Consensus 458 EIDaL~~~r~~~--~~~~~~~LnqLL~eLDg~~--------~~~~VIVIaATN----~p~~LD~ALlRpGRFdr~I~V~l 523 (794)
|||.+..+.+.. +-....++..||..++|-. ...+|++||+-- .|.+|-|.|. |||..++.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCC
Confidence 999998764321 1223567788998888832 235688887653 4566777887 59999999999
Q ss_pred CCHHHHHHHHH
Q 003807 524 PDVRGRQEILE 534 (794)
Q Consensus 524 Pd~~eR~eILk 534 (794)
++.++...||.
T Consensus 335 L~~~dL~~ILt 345 (443)
T PRK05201 335 LTEEDFVRILT 345 (443)
T ss_pred CCHHHHHHHhc
Confidence 99999998883
No 138
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.39 E-value=1e-12 Score=149.14 Aligned_cols=198 Identities=26% Similarity=0.385 Sum_probs=131.3
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM- 430 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~- 430 (794)
-+|+||+|.+.+..++.+.+.... +.+..|||.|++||||.++|++|.+.. +.||+.+||..+-+.
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~L 311 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIA----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETL 311 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhc----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHH
Confidence 489999999999888877666433 344579999999999999999998865 679999999887443
Q ss_pred ------------hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc---------cc
Q 003807 431 ------------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------EQ 489 (794)
Q Consensus 431 ------------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~---------~~ 489 (794)
|.|....--..+|+.|..+ .||+|||..+.. ..+..||..++.- ..
T Consensus 312 lESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl----------~LQaKLLRVLQEkei~rvG~t~~~ 378 (560)
T COG3829 312 LESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPL----------PLQAKLLRVLQEKEIERVGGTKPI 378 (560)
T ss_pred HHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCH----------HHHHHHHHHHhhceEEecCCCCce
Confidence 2222222234556666544 899999998843 4455566555431 11
Q ss_pred CCcEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhcc----CCC-CCcccHHHHHH
Q 003807 490 NEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPL-ADDVDVKAIAR 553 (794)
Q Consensus 490 ~~~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~----~~l-~~dvdl~~IAr 553 (794)
...|.|||||| ..|-+++-. |+|-. ++.+..|..++|.+ +..+++.+ .+. ...+..+.++.
T Consensus 379 ~vDVRIIAATN--~nL~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~ 455 (560)
T COG3829 379 PVDVRIIAATN--RNLEKMIAE-GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALAL 455 (560)
T ss_pred eeEEEEEeccC--cCHHHHHhc-CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 23599999999 455444432 55533 77888899999876 33334432 221 12344444332
Q ss_pred -----------HHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 554 -----------DLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 554 -----------DL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
+|+|++.++.... .....|+.+|+.
T Consensus 456 L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 456 LLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 8999999887743 344457777766
No 139
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=3.3e-12 Score=153.27 Aligned_cols=165 Identities=22% Similarity=0.314 Sum_probs=115.7
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh-----hhhh
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-----MFVG 433 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e-----~~vG 433 (794)
.|+|++++++.|.+.+...+..-. . ..++...+||+||||||||.+|+++|..++.+|+.++++++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 389999999999888875432100 0 1122236999999999999999999999999999999998743 2333
Q ss_pred hhhH-----HHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--c-------CCcEEEEEEc
Q 003807 434 VGAR-----RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEGIILMAAT 499 (794)
Q Consensus 434 ~~~~-----~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--~-------~~~VIVIaAT 499 (794)
.... .-..+.+..+....+||||||||.+.+ .+++.|+..||.-. . -.++++|+||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~----------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP----------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH----------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 2111 111233334555568999999999943 56777777776321 1 1357899999
Q ss_pred CCC-------------------------CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 500 NLP-------------------------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 500 N~p-------------------------~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
|.- ..+.|.|+. |+|.+|.|++.+.++..+|+..++.
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 932 124566665 9999999999999999999887664
No 140
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.38 E-value=8.6e-12 Score=115.58 Aligned_cols=120 Identities=44% Similarity=0.661 Sum_probs=82.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhhhhHH---HHHHHHHHHhCCCeEEEEcCcccccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARR---VRSLFQAAKKKAPCIIFIDEIDAVGS 464 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~~~~~---vr~lF~~Ar~~aP~ILfIDEIDaL~~ 464 (794)
.++++|+||||||||++++.+++.+ +.+++++++.............. ....+.......+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 3579999999999999999999998 89999999887655432222111 12223334455688999999998822
Q ss_pred cccccccchHHHHHHHHHhhhcccc----CCcEEEEEEcCCCC--CCChhhcCCCccceEEEcc
Q 003807 465 TRKQWEGHTKKTLHQLLVEMDGFEQ----NEGIILMAATNLPD--ILDPALTRPGRFDRHIVVP 522 (794)
Q Consensus 465 ~r~~~~~~~~~~LnqLL~eLDg~~~----~~~VIVIaATN~p~--~LD~ALlRpGRFdr~I~V~ 522 (794)
.....++..+..... ..++.+|+++|... .+++.+.. ||+.++.++
T Consensus 99 ----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 ----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 222333333333322 46788888998777 67777776 898777775
No 141
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.37 E-value=2.9e-11 Score=126.85 Aligned_cols=186 Identities=22% Similarity=0.326 Sum_probs=130.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcch
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~ 427 (794)
....+.+++++|++..|+.|.+-...+. .+.+..++||+|++|||||+++||+..+. |..++.+...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFL--------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHH--------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 3445789999999999999977555332 24567899999999999999999999866 678888887666
Q ss_pred hhhhhhhhhHHHHHHHHHHHh-CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc--ccCCcEEEEEEcCCCCC
Q 003807 428 EEMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQNEGIILMAATNLPDI 504 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~--~~~~~VIVIaATN~p~~ 504 (794)
.. +..+++..+. ..+-|||+|++. +.. .......|-..|||- ....+|+|.||+|+-..
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe~--------~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-FEE--------GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-CCC--------CcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 43 3455555553 345699999853 211 123335555666664 34568999999997654
Q ss_pred CChhhc---------------------CCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHH
Q 003807 505 LDPALT---------------------RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARDLANLVNIAA 563 (794)
Q Consensus 505 LD~ALl---------------------RpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IArDL~nlvn~Aa 563 (794)
+..... =..||..+|.|..|+.++-.+|++++++...+.-+ . +++..+|.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~--~-------e~l~~~Al 224 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELD--E-------EELRQEAL 224 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC--H-------HHHHHHHH
Confidence 432211 12489999999999999999999999976654422 2 33445566
Q ss_pred HHHHHhCC
Q 003807 564 IKAAVDGG 571 (794)
Q Consensus 564 l~Aa~~~~ 571 (794)
..|..++.
T Consensus 225 ~wa~~rg~ 232 (249)
T PF05673_consen 225 QWALRRGG 232 (249)
T ss_pred HHHHHcCC
Confidence 66666653
No 142
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=5.7e-12 Score=151.62 Aligned_cols=166 Identities=25% Similarity=0.364 Sum_probs=116.8
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh-----h
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK-GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-----F 431 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pk-gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~-----~ 431 (794)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||.+|+++|..++.+++.++++++.+. +
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 3588999999988887764322100 112244 47999999999999999999999999999999987542 2
Q ss_pred hhhh-----hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCCcEEEEE
Q 003807 432 VGVG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIILMA 497 (794)
Q Consensus 432 vG~~-----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~~VIVIa 497 (794)
.|.. ......+.+..+....+||+|||||.+. ....+.|+..||... .-.+.+||+
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH----------PDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 2221 1222334444555667899999999884 356777777776431 013578889
Q ss_pred EcCCCC-------------------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003807 498 ATNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 498 ATN~p~-------------------------~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~ 539 (794)
|||... .+.|.|+. |||.+|.|.+.+.++..+|++..+++
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 998642 13556654 99999999999999999999887653
No 143
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.36 E-value=1.3e-11 Score=135.97 Aligned_cols=206 Identities=25% Similarity=0.329 Sum_probs=127.5
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEE--------
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFF-------- 420 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-------g~pfi-------- 420 (794)
.|..|+|++++|..|.-.+ -+|. ..+++|.|+||||||++++++++-+ ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4899999999988873222 1221 2379999999999999999999876 33332
Q ss_pred E-EeCcc----------------hhhhhhhhhhHHHH------------------HHHHHHHhCCCeEEEEcCccccccc
Q 003807 421 Y-RAGSE----------------FEEMFVGVGARRVR------------------SLFQAAKKKAPCIIFIDEIDAVGST 465 (794)
Q Consensus 421 ~-is~se----------------~~e~~vG~~~~~vr------------------~lF~~Ar~~aP~ILfIDEIDaL~~~ 465 (794)
. -+|.. |.++-.|....++- .++.+| ...+||||||+.+..
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLED- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCH-
Confidence 0 00100 01111111111111 111111 235999999999843
Q ss_pred ccccccchHHHHHHHHHhhhcc-----------ccCCcEEEEEEcCCCC-CCChhhcCCCccceEEEccCCCH-HHHHHH
Q 003807 466 RKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPDV-RGRQEI 532 (794)
Q Consensus 466 r~~~~~~~~~~LnqLL~eLDg~-----------~~~~~VIVIaATN~p~-~LD~ALlRpGRFdr~I~V~lPd~-~eR~eI 532 (794)
.++..|+..|+.- ....++++|+++|..+ .+.++|+. ||...+.++.|+. ++|.+|
T Consensus 146 ---------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 146 ---------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred ---------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHH
Confidence 5566666666431 1234688999888655 68999998 9999999999876 889999
Q ss_pred HHHHhccC--CCC-----------------------Ccc--c---HHHHHH-----------HHHHHHHHHHHHHHHhCC
Q 003807 533 LELYLQDK--PLA-----------------------DDV--D---VKAIAR-----------DLANLVNIAAIKAAVDGG 571 (794)
Q Consensus 533 Lk~~l~~~--~l~-----------------------~dv--d---l~~IAr-----------DL~nlvn~Aal~Aa~~~~ 571 (794)
++...... ... .++ + ...++. ....+++.|...|+.+|+
T Consensus 215 L~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR 294 (337)
T TIGR02030 215 VERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGR 294 (337)
T ss_pred HHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 98753321 000 000 0 111111 222456667778888899
Q ss_pred CCCcHHHHHHHHHHHhc
Q 003807 572 EKLTATELEFAKDRILM 588 (794)
Q Consensus 572 ~~It~~dl~~Ai~ri~~ 588 (794)
..|+.+|+..+..-++.
T Consensus 295 ~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 295 TEVTVDDIRRVAVLALR 311 (337)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999888776654
No 144
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.35 E-value=1.6e-11 Score=145.58 Aligned_cols=206 Identities=26% Similarity=0.331 Sum_probs=133.1
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------------------- 415 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-------------------- 415 (794)
.|.+|+|++.+|..|.-.. .++. ..+|||+||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999987774322 2221 1379999999999999999999877
Q ss_pred ---------------CCCEEEEeCcchhhhhhhhh--hHHH--------HHHHHHHHhCCCeEEEEcCcccccccccccc
Q 003807 416 ---------------GVPFFYRAGSEFEEMFVGVG--ARRV--------RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE 470 (794)
Q Consensus 416 ---------------g~pfi~is~se~~e~~vG~~--~~~v--------r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~ 470 (794)
..||+.+.++......+|.. ...+ ..++..| ...|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC-------
Confidence 35677766554433333321 0000 0111111 22499999999994
Q ss_pred cchHHHHHHHHHhhhcc-----------ccCCcEEEEEEcCCC-CCCChhhcCCCccceEEEccCCC-HHHHHHHHHHHh
Q 003807 471 GHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLP-DILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYL 537 (794)
Q Consensus 471 ~~~~~~LnqLL~eLDg~-----------~~~~~VIVIaATN~p-~~LD~ALlRpGRFdr~I~V~lPd-~~eR~eILk~~l 537 (794)
..+++.|+..|+.- .....+++|+|+|.. ..+.++|+. ||+.+|.++.|. .+++.+|++..+
T Consensus 140 ---~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 140 ---DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred ---HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 35677777777521 112458999999854 358889998 999999998764 577788877543
Q ss_pred ccCCC-------------------------CCcc--c---HHHHHH-----------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 538 QDKPL-------------------------ADDV--D---VKAIAR-----------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 538 ~~~~l-------------------------~~dv--d---l~~IAr-----------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
..... .+.+ + +..++. ....+++.|...|+.+++..|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~ 294 (633)
T TIGR02442 215 AFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTA 294 (633)
T ss_pred hhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCH
Confidence 21100 0001 1 111111 12345566677888999999999
Q ss_pred HHHHHHHHHHhc
Q 003807 577 TELEFAKDRILM 588 (794)
Q Consensus 577 ~dl~~Ai~ri~~ 588 (794)
+|+..|+.-++.
T Consensus 295 ~Dv~~A~~lvL~ 306 (633)
T TIGR02442 295 EDVREAAELVLP 306 (633)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 145
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.30 E-value=1.5e-11 Score=134.23 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=99.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh--hhhhhhHH----------HHHHHHHHHhCCCeEEEEcCc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM--FVGVGARR----------VRSLFQAAKKKAPCIIFIDEI 459 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~--~vG~~~~~----------vr~lF~~Ar~~aP~ILfIDEI 459 (794)
++|||.||||||||++|+.+|.+++.|++.+++...... ++|...-. ....+..|.. .++++++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999998776544 34432110 1123334433 3589999999
Q ss_pred ccccccccccccchHHHHHHHHHh-----hh----ccccCCcEEEEEEcCCCC------------CCChhhcCCCccceE
Q 003807 460 DAVGSTRKQWEGHTKKTLHQLLVE-----MD----GFEQNEGIILMAATNLPD------------ILDPALTRPGRFDRH 518 (794)
Q Consensus 460 DaL~~~r~~~~~~~~~~LnqLL~e-----LD----g~~~~~~VIVIaATN~p~------------~LD~ALlRpGRFdr~ 518 (794)
|...+ .....++.+|.. +. .+.....+.||||+|..+ .++.|++. ||-.+
T Consensus 144 n~a~p-------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~ 214 (327)
T TIGR01650 144 DAGRP-------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIV 214 (327)
T ss_pred hccCH-------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeE
Confidence 98843 123445556542 11 112345688999999754 36888887 99888
Q ss_pred EEccCCCHHHHHHHHHHHhcc
Q 003807 519 IVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 519 I~V~lPd~~eR~eILk~~l~~ 539 (794)
+.++.|+.++-.+|+......
T Consensus 215 ~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 215 TTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred eeCCCCCHHHHHHHHHhhccC
Confidence 899999999999999876543
No 146
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.30 E-value=1.6e-11 Score=142.52 Aligned_cols=200 Identities=25% Similarity=0.365 Sum_probs=126.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh-----------cCCCEEEEe
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE-----------AGVPFFYRA 423 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~e-----------ag~pfi~is 423 (794)
.+|++++|.+.+.+.+.+.+..+... +.+|||+|++||||+++|++|... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46999999999998888877754432 237999999999999999999887 467999999
Q ss_pred Ccchhhh-----hhhhh------h--HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--
Q 003807 424 GSEFEEM-----FVGVG------A--RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-- 488 (794)
Q Consensus 424 ~se~~e~-----~vG~~------~--~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~-- 488 (794)
|..+.+. ..|.. + ..-..+|+.|.. ..||||||+.+.. ..+..|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~----------~~Q~kLl~~L~e~~~~ 352 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPL----------PLQTRLLRVLEEKEVT 352 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCH----------HHHHHHHhhhhcCeEE
Confidence 9876432 11210 0 011234555543 4899999999943 44555665554311
Q ss_pred -------cCCcEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC--CCCCcccH
Q 003807 489 -------QNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK--PLADDVDV 548 (794)
Q Consensus 489 -------~~~~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~~--~l~~dvdl 548 (794)
....+.+|++||. .+...+ ..|+|.. .+.+..|..++|.+ ++++++++. .....++.
T Consensus 353 r~G~~~~~~~dvRiIaat~~--~L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 429 (538)
T PRK15424 353 RVGGHQPVPVDVRVISATHC--DLEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSA 429 (538)
T ss_pred ecCCCceeccceEEEEecCC--CHHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 1234689999984 333222 3344442 56777888888865 455555431 11111222
Q ss_pred H----------HHH--------HHHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 549 K----------AIA--------RDLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 549 ~----------~IA--------rDL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
+ .+. ++|.|+++++++.+.......|+.+++.
T Consensus 430 ~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 430 ALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 2 222 2899999999886543333567766654
No 147
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.30 E-value=1.5e-10 Score=125.67 Aligned_cols=89 Identities=21% Similarity=0.267 Sum_probs=65.1
Q ss_pred EEEEEcCC------------CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------
Q 003807 494 ILMAATNL------------PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR------- 553 (794)
Q Consensus 494 IVIaATN~------------p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr------- 553 (794)
|||.|||+ |.-++..|+. |+ .+|...+++.++.++|++..++...+. ++-.++.++.
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 66677774 4456666664 43 467778899999999999998765544 2333555554
Q ss_pred -HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 003807 554 -DLANLVNIAAIKAAVDGGEKLTATELEFAKDR 585 (794)
Q Consensus 554 -DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~r 585 (794)
...+++.-|.+.|.++++..|..+|+++|.+-
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 44567777889999999999999999998764
No 148
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=8.1e-11 Score=139.79 Aligned_cols=180 Identities=20% Similarity=0.322 Sum_probs=132.2
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---------- 415 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---------- 415 (794)
..++.....-++|-|+|.++..+.+.+++. . +..++-+|.|+||+|||.++..+|.+.
T Consensus 158 ~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~---R---------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~ 225 (786)
T COG0542 158 RDLTELAREGKLDPVIGRDEEIRRTIQILS---R---------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLK 225 (786)
T ss_pred hhhHHHHhcCCCCCCcChHHHHHHHHHHHh---c---------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHc
Confidence 334444445579999999988666655554 2 223467899999999999999999876
Q ss_pred CCCEEEEeCcchh--hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcE
Q 003807 416 GVPFFYRAGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI 493 (794)
Q Consensus 416 g~pfi~is~se~~--e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~V 493 (794)
+..++..+.+.+. ..|-|+.+++++.+.+...+..+.||||||||.+.+.....++ .-...|-|.-.+. +..+
T Consensus 226 ~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLA----RGeL 300 (786)
T COG0542 226 DKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPALA----RGEL 300 (786)
T ss_pred CCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHHh----cCCe
Confidence 3456777777664 4689999999999999999888999999999999775443222 2233333333332 5667
Q ss_pred EEEEEcCCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCc
Q 003807 494 ILMAATNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD 545 (794)
Q Consensus 494 IVIaATN~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~d 545 (794)
-+||||+.-+ .-|+||.| || ..|.+..|+.++-..||+..-......+.
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~ 354 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHG 354 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccC
Confidence 8899887543 34999999 99 67899999999999999886655544444
No 149
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.28 E-value=1.5e-11 Score=139.25 Aligned_cols=197 Identities=26% Similarity=0.373 Sum_probs=132.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM- 430 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~- 430 (794)
..+.+++|.+.+.+++.+.+..+...+. .|||+|++||||.++||+|.... +.||+.+||..+.+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4688999999999999999987766544 79999999999999999998865 569999999877432
Q ss_pred ----hhhhh-------hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cC
Q 003807 431 ----FVGVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QN 490 (794)
Q Consensus 431 ----~vG~~-------~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~ 490 (794)
..|.. ..+-...|+.|.. ..||||||..+. ...+..||..++.-. -+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mp----------l~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMP----------LELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCC----------HHHHHHHHHHHHcCeeEecCCCcccc
Confidence 11210 0112234555544 399999999884 345566666654211 12
Q ss_pred CcEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhcc----CC-CCCcccHHHHHH-
Q 003807 491 EGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KP-LADDVDVKAIAR- 553 (794)
Q Consensus 491 ~~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~----~~-l~~dvdl~~IAr- 553 (794)
-.|.||+||| .+|...+-. |+|-. ++.+..|..++|.+ ++++|+++ .+ -...++.+.++.
T Consensus 275 vdvRiIaaT~--~dL~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 275 VDVRIIAATN--RDLEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred eeeEEEeecC--cCHHHHHHc-CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3589999999 455444432 55533 78888999999987 44555543 22 123455555443
Q ss_pred ----------HHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 554 ----------DLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 554 ----------DL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
+|+|++.++++.+ ....|+.+++.
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 7888888777665 33456655543
No 150
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.4e-10 Score=128.60 Aligned_cols=158 Identities=17% Similarity=0.248 Sum_probs=113.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------CEEEE-e-
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYR-A- 423 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~-------pfi~i-s- 423 (794)
.+..|++|+|++++++.|...+. .++.|..+||+||+|+|||++|+.+|+.+.+ |.... .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 45689999999999999988776 5678889999999999999999999998865 21111 1
Q ss_pred --Ccchhhh--------h-h-------------hhhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccccchHH
Q 003807 424 --GSEFEEM--------F-V-------------GVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKK 475 (794)
Q Consensus 424 --~se~~e~--------~-v-------------G~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 475 (794)
|..+... + + ..+...+|.+-+... .+...|++|||+|.+. ..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------~~ 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------RN 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------HH
Confidence 1110000 0 0 011234454443332 2345699999999993 46
Q ss_pred HHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHH
Q 003807 476 TLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY 536 (794)
Q Consensus 476 ~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~ 536 (794)
..|.||..++.. ..+.++|..|+.|+.+.+.+++ |+ ..+.+++|+.++..++|+..
T Consensus 157 aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 157 AANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred HHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 778899999863 3445555567888888899987 76 68999999999999999874
No 151
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=5.2e-11 Score=132.56 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=116.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------E----
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------F---- 420 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pf-------i---- 420 (794)
..+.+|++|+|++++++.|.+.+. .+++|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 356689999999999999988776 467888999999999999999999999773310 0
Q ss_pred --E-E-eCc-----------chhhhhh---h--------hhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccc
Q 003807 421 --Y-R-AGS-----------EFEEMFV---G--------VGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWE 470 (794)
Q Consensus 421 --~-i-s~s-----------e~~e~~v---G--------~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~ 470 (794)
. . .|. ++..... . -....+|++.+.+. ...|.|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0 0 010 0000000 0 12345666655543 3467899999999983
Q ss_pred cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 471 GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 471 ~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
....|.||..++. +..+.++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++....
T Consensus 155 ---~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 155 ---ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ---HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 4678889998884 44556777788999999888876 65 789999999999999998754
No 152
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=1.5e-10 Score=126.84 Aligned_cols=133 Identities=30% Similarity=0.355 Sum_probs=91.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHH------HHHHHh--CCC--eEEEEcCccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSL------FQAAKK--KAP--CIIFIDEIDA 461 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~l------F~~Ar~--~aP--~ILfIDEIDa 461 (794)
.++||.||||||||++|+++|..++.+|+.+.|.......-..+....... |..... ... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 379999999999999999999999999999999865432111111111111 000000 011 3999999998
Q ss_pred ccccccccccchHHHHHHHHHhhhc----------cccCCcEEEEEEcC-----CCCCCChhhcCCCccceEEEccCCCH
Q 003807 462 VGSTRKQWEGHTKKTLHQLLVEMDG----------FEQNEGIILMAATN-----LPDILDPALTRPGRFDRHIVVPNPDV 526 (794)
Q Consensus 462 L~~~r~~~~~~~~~~LnqLL~eLDg----------~~~~~~VIVIaATN-----~p~~LD~ALlRpGRFdr~I~V~lPd~ 526 (794)
..+ .+++.||..|+. +.-..+++||+|.| ....|++|+++ ||...++++.|+.
T Consensus 124 a~p----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 124 APP----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred CCH----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 743 566777766655 33446789999999 44578999998 9999999999955
Q ss_pred H-HHHHHHHHH
Q 003807 527 R-GRQEILELY 536 (794)
Q Consensus 527 ~-eR~eILk~~ 536 (794)
+ +...++...
T Consensus 192 ~~e~~~i~~~~ 202 (329)
T COG0714 192 EEEERIILARV 202 (329)
T ss_pred hHHHHHHHHhC
Confidence 4 444444443
No 153
>PRK09087 hypothetical protein; Validated
Probab=99.25 E-value=1.1e-10 Score=121.78 Aligned_cols=164 Identities=21% Similarity=0.228 Sum_probs=106.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 472 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~ 472 (794)
.++|+||+|+|||+|+++++...++. +++..++...+ +..... .+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDA-----------ANAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHH-----------HHhhhc---CeEEEECCCCCCC--------
Confidence 49999999999999999999887665 34443333221 111111 3899999998732
Q ss_pred hHHHHHHHHHhhhccccCCcEEEEEEcCCCCC---CChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCCC-Ccc
Q 003807 473 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDI---LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDV 546 (794)
Q Consensus 473 ~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~---LD~ALlRpGRFd--r~I~V~lPd~~eR~eILk~~l~~~~l~-~dv 546 (794)
.+..+..++ +........+||+++..|.. ..+.|++ ||. .++.+..|+.++|.+|++.+++...+. ++.
T Consensus 102 ~~~~lf~l~---n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~e 176 (226)
T PRK09087 102 DETGLFHLI---NSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPH 176 (226)
T ss_pred CHHHHHHHH---HHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 123333333 33334455677777766643 3577877 775 589999999999999999999775443 333
Q ss_pred cHHHHHH-------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 547 DVKAIAR-------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 547 dl~~IAr-------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
-+..|++ .+..+++.....+...+ +.||...+++++..+
T Consensus 177 v~~~La~~~~r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 177 VVYYLVSRMERSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 3555555 44444455544444434 668988888887653
No 154
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=3.2e-11 Score=135.62 Aligned_cols=190 Identities=24% Similarity=0.335 Sum_probs=126.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 430 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~ 430 (794)
...+.+|+|.+.+..++.+.|+.....+. .|||.|++||||..+||+|.... +.||+++||..+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~----------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS----------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC----------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 45789999999999999999987666544 79999999999999999998866 679999999988543
Q ss_pred hh-hhhhHHHHHHHHHHHhC--------CCeEEEEcCcccccccccccccchHHHHHHHHHhhhc-----ccc----CCc
Q 003807 431 FV-GVGARRVRSLFQAAKKK--------APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FEQ----NEG 492 (794)
Q Consensus 431 ~v-G~~~~~vr~lF~~Ar~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg-----~~~----~~~ 492 (794)
.. .+--...+..|.-|... ....||+|||..+.- ..+..||..++. ... .-.
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL----------~lQaKLLRvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL----------ALQAKLLRVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH----------HHHHHHHHHHhhcceeecCCCceeEEE
Confidence 21 11112233334333322 124899999998843 344455554432 211 124
Q ss_pred EEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhcc----CCC-CCcccHHHHH----
Q 003807 493 IILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPL-ADDVDVKAIA---- 552 (794)
Q Consensus 493 VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~----~~l-~~dvdl~~IA---- 552 (794)
|.|||||| .+|..+... |+|-. ++.+..|..++|.+ +.++|+++ ... ...++.+.+.
T Consensus 359 VRiIAATN--RDL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 359 VRVIAATN--RDLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEeccc--hhHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 89999999 566655543 66633 66777899998875 23344433 222 2223333332
Q ss_pred -------HHHHHHHHHHHHHH
Q 003807 553 -------RDLANLVNIAAIKA 566 (794)
Q Consensus 553 -------rDL~nlvn~Aal~A 566 (794)
|+|+|++++|++.|
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 39999999999988
No 155
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=9.2e-11 Score=127.54 Aligned_cols=152 Identities=14% Similarity=0.253 Sum_probs=112.5
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------EEEEeCcch
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP--------FFYRAGSEF 427 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p--------fi~is~se~ 427 (794)
+|+||+|++.+++.|...+. .++.|..+||+||+|+|||++|+++|..+.+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 69999999999999877764 46788899999999999999999999977432 2222221
Q ss_pred hhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC
Q 003807 428 EEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (794)
.. ...+...++++.+.+.. ....|++||++|.+. ....|.||..++. +..++++|.+|+.++
T Consensus 69 ~~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~----------~~a~naLLK~LEe--pp~~t~~il~~~~~~ 134 (313)
T PRK05564 69 NK--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT----------EQAQNAFLKTIEE--PPKGVFIILLCENLE 134 (313)
T ss_pred cC--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC----------HHHHHHHHHHhcC--CCCCeEEEEEeCChH
Confidence 00 01123456766664432 334699999999883 4678899999985 445566666668889
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 504 ~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
.+-+.+++ |. .++.|+.|+.++....++..+
T Consensus 135 ~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 135 QILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 99999987 55 689999999999888887654
No 156
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.24 E-value=4.3e-11 Score=138.84 Aligned_cols=200 Identities=25% Similarity=0.344 Sum_probs=122.1
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF 431 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~ 431 (794)
.+|++++|.+.+.+.+.+.+..+... +.+|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 57999999999988888877654432 2379999999999999999998754 6799999998774321
Q ss_pred -----hhhhh--------HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------c
Q 003807 432 -----VGVGA--------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------Q 489 (794)
Q Consensus 432 -----vG~~~--------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~ 489 (794)
.|... ..-..+|+.|.. ..||||||+.|.. ..+..|+..++.-. .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~----------~~Q~~Ll~~L~~~~~~r~g~~~~~ 345 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPL----------PLQTRLLRVLEEREVVRVGGTEPV 345 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCH----------HHHHHHHHHHhcCcEEecCCCcee
Confidence 11100 011234554433 4899999999943 44555555554211 1
Q ss_pred CCcEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccCCC--CCcccHH---H---
Q 003807 490 NEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDKPL--ADDVDVK---A--- 550 (794)
Q Consensus 490 ~~~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~~~l--~~dvdl~---~--- 550 (794)
..++.+|++||.. +... ...|+|.. .+.+..|..++|.+ ++.+++..... ...++.+ .
T Consensus 346 ~~dvRiIaat~~~--l~~~-v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 346 PVDVRVVAATHCA--LTTA-VQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred eecceEEeccCCC--HHHH-hhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 1246788988843 2221 12233332 46777788888765 44555543211 1112211 1
Q ss_pred ----HHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 551 ----IAR--------DLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 551 ----IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
+.+ +|.|+++++++.+.......|+.+++.
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 322 777888777766532223456666654
No 157
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.23 E-value=1.1e-10 Score=106.77 Aligned_cols=126 Identities=35% Similarity=0.503 Sum_probs=83.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEEeCcchhhh--------------hhhhhhHHHHHHHHHHHhCCCeE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEFEEM--------------FVGVGARRVRSLFQAAKKKAPCI 453 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~p---fi~is~se~~e~--------------~vG~~~~~vr~lF~~Ar~~aP~I 453 (794)
+..++|+||||||||++++.+|..+..+ +++++++..... .........+.++..++...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 888888765332 12334566778888888877899
Q ss_pred EEEcCcccccccccccccchHHHHHHH---HHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCC
Q 003807 454 IFIDEIDAVGSTRKQWEGHTKKTLHQL---LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 524 (794)
Q Consensus 454 LfIDEIDaL~~~r~~~~~~~~~~LnqL---L~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lP 524 (794)
|+|||++.+...... ..... ..............+|+++|......+..+++ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE-------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH-------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 999999999653211 10000 00011112345577888888633333344443 88888887655
No 158
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.23 E-value=3.9e-11 Score=139.60 Aligned_cols=198 Identities=24% Similarity=0.325 Sum_probs=121.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 430 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~ 430 (794)
..+|++++|.+...+.+.+.+..+... ..+|||+|++|||||++|++|+... +.||+.++|..+.+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARS----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 357999999999988888777755432 2369999999999999999999875 579999999877432
Q ss_pred hh-----hhhhH-------HHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--c-------
Q 003807 431 FV-----GVGAR-------RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q------- 489 (794)
Q Consensus 431 ~v-----G~~~~-------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--~------- 489 (794)
.. |.... .....|..+ ...+|||||||.+.. ..+..|+..++.-. .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISP----------AFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCH----------HHHHHHHHHHhcCcEEECCCCceE
Confidence 11 11000 001112222 245999999999953 34555665554311 1
Q ss_pred CCcEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHH----HHHHHHhccC----CCCCcccHHHHHH-
Q 003807 490 NEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQ----EILELYLQDK----PLADDVDVKAIAR- 553 (794)
Q Consensus 490 ~~~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~----eILk~~l~~~----~l~~dvdl~~IAr- 553 (794)
...+.+|++|+.. +...+ ..|+|.. .+.+..|..++|. .|+++++... .....++.+.+..
T Consensus 329 ~~~~riI~~s~~~--l~~~~-~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 329 KVDVRLVAATNRD--LEEAV-AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred eecEEEEEeCCCC--HHHHH-HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 1247889988843 32222 2344422 4455666666654 3555665432 1112344443322
Q ss_pred ----------HHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 554 ----------DLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 554 ----------DL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
+|.|++++|+..+ ....|+.+|+.
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 7888888877654 34577777764
No 159
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=6.5e-10 Score=126.76 Aligned_cols=204 Identities=18% Similarity=0.189 Sum_probs=117.4
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCcc-hhhhhhhhh
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSE-FEEMFVGVG 435 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~--pfi~is~se-~~e~~vG~~ 435 (794)
.|+|.+++.+.+...+. ...+|||+||||||||++|++++..++. +|....+.- ......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 36888887666543332 1237999999999999999999997643 566554431 112222311
Q ss_pred -hHHH--HHHHHHHHhC---CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc-cC-------CcEEEEEEcCC
Q 003807 436 -ARRV--RSLFQAAKKK---APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-QN-------EGIILMAATNL 501 (794)
Q Consensus 436 -~~~v--r~lF~~Ar~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~-~~-------~~VIVIaATN~ 501 (794)
.... ..-|.....+ ...+||+|||..+. ..+++.||..|+.-. .. ...++++|||.
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 1111 1222222211 23499999998663 467888888884211 01 11244455563
Q ss_pred CC---CCChhhcCCCccceEEEccCCC-HHHHHHHHHHHhcc--CCC--CCcccHHHHHH-------------------H
Q 003807 502 PD---ILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYLQD--KPL--ADDVDVKAIAR-------------------D 554 (794)
Q Consensus 502 p~---~LD~ALlRpGRFdr~I~V~lPd-~~eR~eILk~~l~~--~~l--~~dvdl~~IAr-------------------D 554 (794)
.. ...+++.. ||-..+.+|+|+ .++-.+|+...... ... ..-++.+.+.. +
T Consensus 157 LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~ 234 (498)
T PRK13531 157 LPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQ 234 (498)
T ss_pred CcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHH
Confidence 22 12347877 897789999997 45667788764321 111 11233333221 2
Q ss_pred HH------------------HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcc
Q 003807 555 LA------------------NLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 589 (794)
Q Consensus 555 L~------------------nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g 589 (794)
|. .+++-|...|..+|+..|+.+|+. ...-++..
T Consensus 235 L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 235 LRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 21 234445667778899999999999 55555554
No 160
>PHA02244 ATPase-like protein
Probab=99.20 E-value=4.7e-10 Score=124.18 Aligned_cols=124 Identities=24% Similarity=0.313 Sum_probs=79.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhh---hhhHHHHHHHHHHHhCCCeEEEEcCcccccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG---VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ 468 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG---~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~ 468 (794)
.+|||+||||||||++|+++|..++.||+.+++..-.....| ....-...-|-.|.. .+.+|+|||++.+.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~--- 195 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPE--- 195 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCCHH---
Confidence 369999999999999999999999999999984311000111 100111112222222 3469999999988431
Q ss_pred cccchHHHHHHHHHh-----hhc-cccCCcEEEEEEcCCC-----------CCCChhhcCCCccceEEEccCCCH
Q 003807 469 WEGHTKKTLHQLLVE-----MDG-FEQNEGIILMAATNLP-----------DILDPALTRPGRFDRHIVVPNPDV 526 (794)
Q Consensus 469 ~~~~~~~~LnqLL~e-----LDg-~~~~~~VIVIaATN~p-----------~~LD~ALlRpGRFdr~I~V~lPd~ 526 (794)
....++.++.. .++ +....++.+|+|+|.+ ..|+++++. || .+|+++.|+.
T Consensus 196 ----vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 196 ----ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred ----HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 22334444421 111 1234578999999973 467999998 99 5799999983
No 161
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.20 E-value=1.1e-10 Score=135.30 Aligned_cols=186 Identities=25% Similarity=0.335 Sum_probs=117.9
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh-
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF- 431 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~- 431 (794)
++++++|.+...+.+.+.+..+... +.+|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6889999999988888877754432 3479999999999999999998865 5799999998874321
Q ss_pred ----hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCC
Q 003807 432 ----VGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 491 (794)
Q Consensus 432 ----vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~ 491 (794)
.|... ......|..|. ...|||||||.+.. ..+..|+..++.-. ...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPL----------ALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCH----------HHHHHHHHHHhcCCEeeCCCCcceec
Confidence 11100 00112344433 35899999999953 44555555554311 123
Q ss_pred cEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----C-CCCcccHHHHHH--
Q 003807 492 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P-LADDVDVKAIAR-- 553 (794)
Q Consensus 492 ~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~~----~-l~~dvdl~~IAr-- 553 (794)
++.||++||.. +... ...|+|.. .+.|..|..++|.+ ++++++++. . -...++.+.+..
T Consensus 322 ~~RiI~~t~~~--l~~~-~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 322 DVRVIAATNRD--LREE-VRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ceEEEEecCCC--HHHH-HHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 57899999843 3222 22233332 46677888888865 344444322 1 112344444433
Q ss_pred ---------HHHHHHHHHHHHHH
Q 003807 554 ---------DLANLVNIAAIKAA 567 (794)
Q Consensus 554 ---------DL~nlvn~Aal~Aa 567 (794)
+|+|++++|++.+.
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcC
Confidence 88888888887663
No 162
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.19 E-value=1.9e-10 Score=126.36 Aligned_cols=181 Identities=25% Similarity=0.301 Sum_probs=108.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh-----
Q 003807 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----- 431 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~----- 431 (794)
++|.+.+.+.+.+.+..+... ..+|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 467888877777766655432 2369999999999999999998755 4799999998763321
Q ss_pred hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCCcEEE
Q 003807 432 VGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIIL 495 (794)
Q Consensus 432 vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~~VIV 495 (794)
.|... .....+|..|. ..+|||||||.+.. ..+..|+..++.-. ...++.+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASL----------LVQEKLLRVIEYGEFERVGGSQTLQVDVRL 137 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCH----------HHHHHHHHHHHcCcEEecCCCceeccceEE
Confidence 11100 00112344443 35999999999943 44555555554311 1245789
Q ss_pred EEEcCCCC-------CCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhcc----CCCC--CcccHHHHHH-----
Q 003807 496 MAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQD----KPLA--DDVDVKAIAR----- 553 (794)
Q Consensus 496 IaATN~p~-------~LD~ALlRpGRFdr~I~V~lPd~~eR~e----ILk~~l~~----~~l~--~dvdl~~IAr----- 553 (794)
|++||..- .+.+.|.. ||. .+.|..|..++|.+ ++++++.. .... ..++.+.+..
T Consensus 138 I~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 138 VCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred EEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 99998431 22233333 332 45677788888765 44444432 1211 2344443332
Q ss_pred ------HHHHHHHHHHHHH
Q 003807 554 ------DLANLVNIAAIKA 566 (794)
Q Consensus 554 ------DL~nlvn~Aal~A 566 (794)
+|.|++.++++.+
T Consensus 215 WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 215 WPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCchHHHHHHHHHHHHHhC
Confidence 7777777776654
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.19 E-value=2.2e-10 Score=140.03 Aligned_cols=166 Identities=22% Similarity=0.297 Sum_probs=110.6
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCC-ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh-
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP-KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF- 431 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~P-kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~- 431 (794)
++.|+|++.+.+.+...+...+..-. ....| ..+||+||||||||++|+++|..+ +.+|+.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 66799999999999888875432100 01123 358999999999999999999977 4689999998875421
Q ss_pred ----hhhh-----hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--c-------CCcE
Q 003807 432 ----VGVG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEGI 493 (794)
Q Consensus 432 ----vG~~-----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--~-------~~~V 493 (794)
.|.. ...-..+....+....++|+|||++.+. ...++.|+..++.-. . -.+.
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~----------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ 712 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH----------PDVFNILLQVLDDGRLTDGQGRTVDFRNT 712 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC----------HHHHHHHHHHHhhCceecCCceEEeeccc
Confidence 1111 1111112222333444899999999873 356666776665311 1 1235
Q ss_pred EEEEEcCCCC-------------------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 494 ILMAATNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 494 IVIaATN~p~-------------------------~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
+||+|||... .+.|+|+. |+|.++.|.+++.++..+|++.++.
T Consensus 713 iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred EEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 7888999631 23466776 8888999999998888888877764
No 164
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.18 E-value=2e-10 Score=125.99 Aligned_cols=185 Identities=25% Similarity=0.302 Sum_probs=113.8
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh--
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-- 430 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~-- 430 (794)
-|++++|.+...+.+.+.+..+... +.+|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3788999999988888877755432 3369999999999999999998765 479999999986422
Q ss_pred ---hhhhhh-------HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc--cc-------CC
Q 003807 431 ---FVGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ-------NE 491 (794)
Q Consensus 431 ---~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~--~~-------~~ 491 (794)
+.|... ......|..+. ...|||||||.+.. ..+..|+..++.- .. ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~----------~~Q~~L~~~l~~~~~~~~g~~~~~~~ 140 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPM----------LVQEKLLRVIEYGELERVGGSQPLQV 140 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeec
Confidence 112110 00112333333 35899999999953 3445555555431 11 12
Q ss_pred cEEEEEEcCCC-------CCCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhcc----CCCC--CcccHHHHHH-
Q 003807 492 GIILMAATNLP-------DILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQD----KPLA--DDVDVKAIAR- 553 (794)
Q Consensus 492 ~VIVIaATN~p-------~~LD~ALlRpGRFdr~I~V~lPd~~eR~e----ILk~~l~~----~~l~--~dvdl~~IAr- 553 (794)
.+.||++|+.. ..+.+.|.. ||. .+.|..|..++|.+ ++++++.. .... ..++.+.+..
T Consensus 141 ~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L 217 (326)
T PRK11608 141 NVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETL 217 (326)
T ss_pred cEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 47888888753 233344443 442 34566777777754 45555432 1211 2344444432
Q ss_pred ----------HHHHHHHHHHHHH
Q 003807 554 ----------DLANLVNIAAIKA 566 (794)
Q Consensus 554 ----------DL~nlvn~Aal~A 566 (794)
+|.+++++|+..+
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHHhc
Confidence 7778887776643
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.18 E-value=1.6e-10 Score=119.42 Aligned_cols=208 Identities=18% Similarity=0.234 Sum_probs=128.1
Q ss_pred cccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CE
Q 003807 345 NKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----PF 419 (794)
Q Consensus 345 ~~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~-----pf 419 (794)
...|.+...+..++||+|+++..+.|+-+.. .+..| +++|.||||||||+-+.++|+++-. -+
T Consensus 14 ~l~wVeKYrP~~l~dIVGNe~tv~rl~via~-----------~gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v 81 (333)
T KOG0991|consen 14 QLPWVEKYRPSVLQDIVGNEDTVERLSVIAK-----------EGNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAV 81 (333)
T ss_pred cchHHHhhCchHHHHhhCCHHHHHHHHHHHH-----------cCCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHh
Confidence 3457788888899999999999998876665 35566 8999999999999999999998732 35
Q ss_pred EEEeCcchhhhhhhhhhHHHHHHHHHHHhC----CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEE
Q 003807 420 FYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 495 (794)
Q Consensus 420 i~is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIV 495 (794)
..++.|+-...- +...++ ..|.+-+-. .-.||++||.|++.. ..+..|-+.|+-+....+ +
T Consensus 82 LELNASdeRGID--vVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~----------gAQQAlRRtMEiyS~ttR--F 146 (333)
T KOG0991|consen 82 LELNASDERGID--VVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTA----------GAQQALRRTMEIYSNTTR--F 146 (333)
T ss_pred hhccCccccccH--HHHHHH-HHHHHhhccCCCCceeEEEeeccchhhh----------HHHHHHHHHHHHHcccch--h
Confidence 667776654321 111222 345444432 235999999999943 333445555655444444 4
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHHHHHhC
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIKAAVDG 570 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~ 570 (794)
+.++|..+.+-..+.+ |+ -.+.+...+..+...-|....+..++. .+..++.|.- |++..+|. +.+...+
T Consensus 147 alaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNn--LQst~~g 221 (333)
T KOG0991|consen 147 ALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNN--LQSTVNG 221 (333)
T ss_pred hhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHH--HHHHhcc
Confidence 5577777766555554 33 233444445444444343334333332 2223444433 77777765 3455567
Q ss_pred CCCCcHHHHHHHHH
Q 003807 571 GEKLTATELEFAKD 584 (794)
Q Consensus 571 ~~~It~~dl~~Ai~ 584 (794)
-..|+.+.+-..++
T Consensus 222 ~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 222 FGLVNQENVFKVCD 235 (333)
T ss_pred ccccchhhhhhccC
Confidence 77788776654443
No 166
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.18 E-value=2e-10 Score=140.11 Aligned_cols=162 Identities=25% Similarity=0.314 Sum_probs=106.8
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh---
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 430 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pkg-VLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~--- 430 (794)
+.|+|++++.+.+.+.+...+..-. ....|.| +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4689999998888877764322111 0123555 7999999999999999999988 457899999887543
Q ss_pred ---------hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--c-------CCc
Q 003807 431 ---------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEG 492 (794)
Q Consensus 431 ---------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--~-------~~~ 492 (794)
|+|.... ..+....+++..+||+|||||... ...++.|+..+|.-. . -.+
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~----------~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH----------PDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC----------HHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 3332211 123344556777999999999763 356666776665321 0 135
Q ss_pred EEEEEEcCCCCC-----------------------------CChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 493 IILMAATNLPDI-----------------------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 493 VIVIaATN~p~~-----------------------------LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
.+||.|||.... +.|+|+. |++ +|.|.+.+.++..+|++..+.
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 788899985321 2344444 665 667777777777777766553
No 167
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.18 E-value=2.8e-10 Score=132.25 Aligned_cols=196 Identities=21% Similarity=0.334 Sum_probs=117.8
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM- 430 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~- 430 (794)
.+|++++|.+...+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|+.+.+.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~ 270 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDV 270 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHH
Confidence 4799999999987777666654333 22369999999999999999997654 479999999887432
Q ss_pred ----hhhhhh-------HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhc--ccc-------C
Q 003807 431 ----FVGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG--FEQ-------N 490 (794)
Q Consensus 431 ----~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg--~~~-------~ 490 (794)
..|... .....+|+.|. ...|||||||.+.. ..+..|+..++. +.. .
T Consensus 271 ~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~ 337 (520)
T PRK10820 271 VESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSP----------RMQAKLLRFLNDGTFRRVGEDHEVH 337 (520)
T ss_pred HHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCH----------HHHHHHHHHHhcCCcccCCCCccee
Confidence 112111 11123455443 35899999999954 344455555433 111 2
Q ss_pred CcEEEEEEcCCCC-------CCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhc----cCCC-CCcccHHHHHH-
Q 003807 491 EGIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQ----DKPL-ADDVDVKAIAR- 553 (794)
Q Consensus 491 ~~VIVIaATN~p~-------~LD~ALlRpGRFdr~I~V~lPd~~eR~e----ILk~~l~----~~~l-~~dvdl~~IAr- 553 (794)
..+.||++|+.+- .+.+.|.. |+. .+.+..|..++|.+ ++++++. +... ...++.+.+..
T Consensus 338 ~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L 414 (520)
T PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 414 (520)
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3578888887541 12233333 332 46777888888764 3334433 2221 12344444332
Q ss_pred ----------HHHHHHHHHHHHHHHhCCCCCcHHHH
Q 003807 554 ----------DLANLVNIAAIKAAVDGGEKLTATEL 579 (794)
Q Consensus 554 ----------DL~nlvn~Aal~Aa~~~~~~It~~dl 579 (794)
+|.|++.+|...+ ....|+.+|+
T Consensus 415 ~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 415 TRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred hcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 7777777776543 3345666654
No 168
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.17 E-value=3.3e-10 Score=134.51 Aligned_cols=199 Identities=22% Similarity=0.327 Sum_probs=120.8
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM- 430 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~- 430 (794)
.+|++++|.+.+.+.+.+.+..+... ..+|||+|++||||+++|++|.... +.||+.++|..+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 46999999999888777766644332 2369999999999999999998865 479999999877431
Q ss_pred ----hhhhh----hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--c-------CCcE
Q 003807 431 ----FVGVG----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEGI 493 (794)
Q Consensus 431 ----~vG~~----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--~-------~~~V 493 (794)
+.|.. .......|+.| ...+||||||+.+.. ..+..|+..++.-. . ..++
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~----------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ 458 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP----------ELQSALLQVLKTGVITRLDSRRLIPVDV 458 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceEEeeE
Confidence 22211 00001123222 245999999999943 34455555554211 0 1257
Q ss_pred EEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----CCCCcccHHHHHH-----
Q 003807 494 ILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PLADDVDVKAIAR----- 553 (794)
Q Consensus 494 IVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~~----~l~~dvdl~~IAr----- 553 (794)
.||+||+.. +. .+...|+|.. .+.+..|..++|.+ ++++++... .....++.+.+..
T Consensus 459 riI~~t~~~--l~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~ 535 (638)
T PRK11388 459 RVIATTTAD--LA-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYR 535 (638)
T ss_pred EEEEeccCC--HH-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCC
Confidence 899999843 32 2222344422 56777888888854 444554322 1112334333332
Q ss_pred ------HHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 554 ------DLANLVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 554 ------DL~nlvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
+|.|+++.|...+ ....|+.+|+...
T Consensus 536 WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~ 567 (638)
T PRK11388 536 WPGNDFELRSVIENLALSS---DNGRIRLSDLPEH 567 (638)
T ss_pred CCChHHHHHHHHHHHHHhC---CCCeecHHHCchh
Confidence 7888888776653 3346777766543
No 169
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.17 E-value=7.9e-10 Score=130.51 Aligned_cols=93 Identities=26% Similarity=0.338 Sum_probs=62.4
Q ss_pred cEEEEEEcCCC--CCCChhhcCCCccc---eEEEcc--CCC-HHHHHHHHHHH---hccCCCCCcccHHHHH--------
Q 003807 492 GIILMAATNLP--DILDPALTRPGRFD---RHIVVP--NPD-VRGRQEILELY---LQDKPLADDVDVKAIA-------- 552 (794)
Q Consensus 492 ~VIVIaATN~p--~~LD~ALlRpGRFd---r~I~V~--lPd-~~eR~eILk~~---l~~~~l~~dvdl~~IA-------- 552 (794)
.+.+|+++|.. ..+|+.|+. ||+ ..+.|+ .|+ .+.|.++.+.. ++.....+.++.+.++
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 67899999964 578999998 998 556553 344 44454444432 2222112233333222
Q ss_pred ------------HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 553 ------------RDLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 553 ------------rDL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
++|.+++++|...|..+++..|+.+|+++|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 2788999999888888888999999999998754
No 170
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.17 E-value=4.7e-10 Score=129.46 Aligned_cols=201 Identities=23% Similarity=0.286 Sum_probs=120.6
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------------------
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------------------- 415 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea------------------- 415 (794)
..|+||.|++.+++.+.-.+. ...+++|.||||||||++|+++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 479999999998776643221 12479999999999999999998632
Q ss_pred ---------CCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhc
Q 003807 416 ---------GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 486 (794)
Q Consensus 416 ---------g~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg 486 (794)
..||....++......+|.+...-...+..|.. .+|||||++.+.. ..+..|+..|+.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~----------~~~~~L~~~LE~ 321 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKR----------SVLDALREPIED 321 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCH----------HHHHHHHHHHHc
Confidence 134443333322222223221111223333433 5999999998843 455555555543
Q ss_pred cc-----------cCCcEEEEEEcCCC-----C------------------CCChhhcCCCccceEEEccCCCHHHH---
Q 003807 487 FE-----------QNEGIILMAATNLP-----D------------------ILDPALTRPGRFDRHIVVPNPDVRGR--- 529 (794)
Q Consensus 487 ~~-----------~~~~VIVIaATN~p-----~------------------~LD~ALlRpGRFdr~I~V~lPd~~eR--- 529 (794)
.. ...++.+|+++|.. . .|...|+. |||.++.++.++..+.
T Consensus 322 ~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~ 399 (499)
T TIGR00368 322 GSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLST 399 (499)
T ss_pred CcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhcc
Confidence 21 12468899999953 1 46777777 9999999987654321
Q ss_pred ----------HHHHHH------HhccC---CCCCcccHHHHHH------------------------HHHHHHHHHHHHH
Q 003807 530 ----------QEILEL------YLQDK---PLADDVDVKAIAR------------------------DLANLVNIAAIKA 566 (794)
Q Consensus 530 ----------~eILk~------~l~~~---~l~~dvdl~~IAr------------------------DL~nlvn~Aal~A 566 (794)
..+.+. .++.. ..+..++...+-+ ....+++-|...|
T Consensus 400 ~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiA 479 (499)
T TIGR00368 400 GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIA 479 (499)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 222211 11111 1122222222211 4456677777788
Q ss_pred HHhCCCCCcHHHHHHHHH
Q 003807 567 AVDGGEKLTATELEFAKD 584 (794)
Q Consensus 567 a~~~~~~It~~dl~~Ai~ 584 (794)
..++++.|+.+|+.+|+.
T Consensus 480 dL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 480 DLKEEKNISREHLAEAIE 497 (499)
T ss_pred hhcCCCCCCHHHHHHHHh
Confidence 888889999999988874
No 171
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.17 E-value=6.9e-11 Score=131.94 Aligned_cols=188 Identities=28% Similarity=0.388 Sum_probs=119.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEEeCcchhh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGSEFEE 429 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~e----ag~pfi~is~se~~e 429 (794)
...|++++|.+...+++.+-+..+.. -..+||++|++||||+++|++|+.. .+.||+.+||..+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAP----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCC----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 34799999999987777776664222 1247999999999999999999753 367999999998744
Q ss_pred h-------------hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc---------
Q 003807 430 M-------------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--------- 487 (794)
Q Consensus 430 ~-------------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~--------- 487 (794)
. |.| ....-..+|+.|..+ +||+|||..+.. ..+..|+..||.-
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~----------~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP----------EGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH----------hHHHHHHHHHHcCceEecCCCC
Confidence 3 222 122233455555444 999999999954 3344455555531
Q ss_pred ccCCcEEEEEEcCCCCCCChhhcC-CCccc--eEEEccCCCHHHHHH----HHHHHh----ccCCCCCcccH-HHHH---
Q 003807 488 EQNEGIILMAATNLPDILDPALTR-PGRFD--RHIVVPNPDVRGRQE----ILELYL----QDKPLADDVDV-KAIA--- 552 (794)
Q Consensus 488 ~~~~~VIVIaATN~p~~LD~ALlR-pGRFd--r~I~V~lPd~~eR~e----ILk~~l----~~~~l~~dvdl-~~IA--- 552 (794)
.....|.+|+||| ..++.+++. ..-+. -.+.|.+|+.++|.+ ++++++ ++......++. +.+-
T Consensus 210 ~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~ 287 (403)
T COG1221 210 PRPVDVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALL 287 (403)
T ss_pred CcCCCceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 1234689999999 666665554 11222 144566788887754 344444 44444332222 2221
Q ss_pred --------HHHHHHHHHHHHHHH
Q 003807 553 --------RDLANLVNIAAIKAA 567 (794)
Q Consensus 553 --------rDL~nlvn~Aal~Aa 567 (794)
++|.|++.++...+.
T Consensus 288 ~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 288 AYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhc
Confidence 188888888877764
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.17 E-value=2.9e-10 Score=138.60 Aligned_cols=131 Identities=24% Similarity=0.320 Sum_probs=88.8
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh---
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK-GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 430 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pk-gVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~--- 430 (794)
+.|+|++++++.+...+...+..-. ....|. .+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5689999999999887764321100 112233 47999999999999999999987 468999998887432
Q ss_pred --hhhhh-----hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCCcEE
Q 003807 431 --FVGVG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGII 494 (794)
Q Consensus 431 --~vG~~-----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~~VI 494 (794)
+.|.. ......+....+....+||+|||+|.+. ....+.|+..||.-. .-.+.+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH----------PDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC----------HHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 12211 1122345555566656899999999883 357777777777421 123578
Q ss_pred EEEEcCCC
Q 003807 495 LMAATNLP 502 (794)
Q Consensus 495 VIaATN~p 502 (794)
+|.|||..
T Consensus 655 ~I~Tsn~g 662 (821)
T CHL00095 655 IIMTSNLG 662 (821)
T ss_pred EEEeCCcc
Confidence 99999954
No 173
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.16 E-value=5.9e-10 Score=112.17 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=93.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCcchhhhhhhhhhHHHHHHH
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 443 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------------------fi~is~se~~e~~vG~~~~~vr~lF 443 (794)
.++|..+||+||+|+|||++|+++++++... +..+.... ...+.+.++++.
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~ 85 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELV 85 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHH
Confidence 4677889999999999999999999987542 22221110 011235666666
Q ss_pred HHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEE
Q 003807 444 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 519 (794)
Q Consensus 444 ~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I 519 (794)
+.+.. ....||+|||+|.+.. ..++.||..|+.. ....++|.+||.+..+.+++++ |+ ..+
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~~----------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~ 150 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMNE----------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVL 150 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhCH----------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEe
Confidence 66543 3456999999999943 4677888888863 3345566667778899999987 65 589
Q ss_pred EccCCCHHHHHHHHHHH
Q 003807 520 VVPNPDVRGRQEILELY 536 (794)
Q Consensus 520 ~V~lPd~~eR~eILk~~ 536 (794)
.+++|+.++..++++..
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999999998776
No 174
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.1e-09 Score=117.89 Aligned_cols=150 Identities=24% Similarity=0.326 Sum_probs=103.9
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---------------------
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--------------------- 416 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag--------------------- 416 (794)
++++|.+++...+...+.. ..+.|..+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3567777776666554431 225666799999999999999999999886
Q ss_pred ---CCEEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc
Q 003807 417 ---VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ 489 (794)
Q Consensus 417 ---~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~ 489 (794)
-.++.++.++....- .....++++-+.... ....|++|||+|.+. ....|.++..++. +
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt----------~~A~nallk~lEe--p 136 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT----------EDAANALLKTLEE--P 136 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh----------HHHHHHHHHHhcc--C
Confidence 356666666553321 233445555444433 235699999999994 3678889988885 4
Q ss_pred CCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHH
Q 003807 490 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILE 534 (794)
Q Consensus 490 ~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk 534 (794)
.....+|.+||.+..+-+.+.+ |+ ..+.|++|+...+....+
T Consensus 137 ~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 5566777888999998888887 54 668887766554444443
No 175
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.15 E-value=5.4e-10 Score=129.50 Aligned_cols=162 Identities=21% Similarity=0.204 Sum_probs=96.4
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcC--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-EEEE---eCcchhhhhh
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLG--GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-FFYR---AGSEFEEMFV 432 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG--~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-fi~i---s~se~~e~~v 432 (794)
+|.|++.+|..+.- ..+....+...-| .+-..+|||+|+||||||++|++++...... |... ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l--~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILL--LLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHH--HHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 57899988776632 2222211111111 1223479999999999999999999987543 3221 2211211000
Q ss_pred hh---hhHHH-HHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc-----------cCCcEEEEE
Q 003807 433 GV---GARRV-RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMA 497 (794)
Q Consensus 433 G~---~~~~v-r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~-----------~~~~VIVIa 497 (794)
.. +...+ ...+..| ...+++|||+|.+.. ..+..|+..|+.-. -+.++.|||
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~----------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKMDD----------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhCCH----------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 00 00000 0011111 235999999999843 44555666554311 124678999
Q ss_pred EcCCCC-------------CCChhhcCCCccceEEEc-cCCCHHHHHHHHHHHh
Q 003807 498 ATNLPD-------------ILDPALTRPGRFDRHIVV-PNPDVRGRQEILELYL 537 (794)
Q Consensus 498 ATN~p~-------------~LD~ALlRpGRFdr~I~V-~lPd~~eR~eILk~~l 537 (794)
|+|..+ .|++++++ |||..+.+ +.|+.+...+|.++.+
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 999653 58999998 99996555 7899999999888754
No 176
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.15 E-value=5e-10 Score=134.08 Aligned_cols=186 Identities=21% Similarity=0.323 Sum_probs=115.2
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM- 430 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~- 430 (794)
.+|++++|.+.+.+.+.+.+..+... ..+|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 47999999999988888777755432 2369999999999999999998855 579999999876332
Q ss_pred ----hhhhh-------hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cC
Q 003807 431 ----FVGVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QN 490 (794)
Q Consensus 431 ----~vG~~-------~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~ 490 (794)
..|.. .......|..+. ..+|||||||.+.. ..+..|+..++.-. ..
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~----------~~Q~~L~~~l~~~~~~~~g~~~~~~ 509 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPL----------ELQPKLLRVLQEQEFERLGSNKIIQ 509 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCH----------HHHHHHHHHHHhCCEEeCCCCCccc
Confidence 11210 011123344433 35999999999943 45555655554311 12
Q ss_pred CcEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----CCC-CcccHHHHHH-
Q 003807 491 EGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PLA-DDVDVKAIAR- 553 (794)
Q Consensus 491 ~~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~~----~l~-~dvdl~~IAr- 553 (794)
.++.+|++|+.. +.. +...|+|.. .+.+..|..++|.+ ++++++.+. ... ..++.+.+..
T Consensus 510 ~~~RiI~~t~~~--l~~-~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 510 TDVRLIAATNRD--LKK-MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ceEEEEEeCCCC--HHH-HHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 457899999853 221 111233332 56778888888866 445554322 111 1233333322
Q ss_pred ----------HHHHHHHHHHHHH
Q 003807 554 ----------DLANLVNIAAIKA 566 (794)
Q Consensus 554 ----------DL~nlvn~Aal~A 566 (794)
+|+|++++|++.+
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhC
Confidence 7777777776543
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.15 E-value=4.1e-10 Score=137.79 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=112.9
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh---
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 430 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~--- 430 (794)
-+.|+|++++.+.+.+.+...+..-. ...++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 35699999999999887775321100 011233468999999999999999999977 568999999887432
Q ss_pred --hhhhh-----hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--c-------CCcEE
Q 003807 431 --FVGVG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEGII 494 (794)
Q Consensus 431 --~vG~~-----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--~-------~~~VI 494 (794)
..|.. ......+....+....+||+||||+.+. ...++.|+..|+.-. . -.+.+
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~----------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH----------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC----------HHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 11211 1111233344455555799999999883 356677777665321 1 13467
Q ss_pred EEEEcCCCCC-------------------------CChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 495 LMAATNLPDI-------------------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 495 VIaATN~p~~-------------------------LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
||+|||.... +.|.|+. |+|.++.|.+++.++..+|+...+.
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 8899997321 2345554 8999999999999999999887654
No 178
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.13 E-value=1.1e-09 Score=117.99 Aligned_cols=208 Identities=22% Similarity=0.346 Sum_probs=132.4
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcch---
Q 003807 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF--- 427 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se~--- 427 (794)
.+|+..+++.|..+-+.+..|.. .++| ++||+|++|.|||++++.+.... .+|++++.+..-
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~-----~Rmp-~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKR-----HRMP-NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcc-----cCCC-ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 49999999999998888888865 4555 89999999999999999998744 357777754321
Q ss_pred hhhh------hhh-------hhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEE
Q 003807 428 EEMF------VGV-------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 494 (794)
Q Consensus 428 ~e~~------vG~-------~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VI 494 (794)
...| .|. ..+.........+...+.+|+|||++.+..... ..++.+..+|+.+- -.-+-.++
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK~L~-NeL~ipiV 184 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY----RKQREFLNALKFLG-NELQIPIV 184 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH----HHHHHHHHHHHHHh-hccCCCeE
Confidence 1111 011 112223334555667788999999999754221 11222222333331 12233455
Q ss_pred EEEEcCCCCC--CChhhcCCCccceEEEccCCC-HHHHHHHHHHHhccCCCC--CcccHHHHHH-----------HHHHH
Q 003807 495 LMAATNLPDI--LDPALTRPGRFDRHIVVPNPD-VRGRQEILELYLQDKPLA--DDVDVKAIAR-----------DLANL 558 (794)
Q Consensus 495 VIaATN~p~~--LD~ALlRpGRFdr~I~V~lPd-~~eR~eILk~~l~~~~l~--~dvdl~~IAr-----------DL~nl 558 (794)
.+|+..-... -|+-+-+ ||+. +.+|.-. .++-..++..+-...++. ..+....+++ ++.++
T Consensus 185 ~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred EeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 5554432222 3677766 8954 4445433 345556666666555443 3455555655 89999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHH
Q 003807 559 VNIAAIKAAVDGGEKLTATELEF 581 (794)
Q Consensus 559 vn~Aal~Aa~~~~~~It~~dl~~ 581 (794)
++.||..|++.|.+.||.+.++.
T Consensus 262 l~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 262 LNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHhcCCceecHHHHhh
Confidence 99999999999999999998874
No 179
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.12 E-value=1.7e-09 Score=122.44 Aligned_cols=141 Identities=27% Similarity=0.409 Sum_probs=87.7
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEEEeC----c
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYRAG----S 425 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-------fi~is~----s 425 (794)
++++.+.++..+.+... +.. .++++|+||||||||++|+.+|..+... ++.++. .
T Consensus 174 l~d~~i~e~~le~l~~~---L~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKR---LTI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHH---Hhc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 67777776665554333 221 3479999999999999999999987431 222221 2
Q ss_pred chhhhh--hhhhhH----HHHHHHHHHHh--CCCeEEEEcCcccccccccccccchHHHHHHHHHhh-------------
Q 003807 426 EFEEMF--VGVGAR----RVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM------------- 484 (794)
Q Consensus 426 e~~e~~--vG~~~~----~vr~lF~~Ar~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eL------------- 484 (794)
+++..+ .+.+.. .+.++...|+. ..|++||||||+.-... +.+..++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~---------kiFGel~~lLE~~~rg~~~~v~l 310 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS---------KVFGEVMMLMEHDKRGENWSVPL 310 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH---------Hhhhhhhhhccccccccccceee
Confidence 333222 111211 23445566654 35899999999986432 2222222211
Q ss_pred -------hccccCCcEEEEEEcCCCC----CCChhhcCCCccceEEEccC
Q 003807 485 -------DGFEQNEGIILMAATNLPD----ILDPALTRPGRFDRHIVVPN 523 (794)
Q Consensus 485 -------Dg~~~~~~VIVIaATN~p~----~LD~ALlRpGRFdr~I~V~l 523 (794)
+.+....++.||||+|..+ .+|.||+| || ..|++.+
T Consensus 311 ~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 311 TYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred eccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 2345567899999999987 79999999 88 4466653
No 180
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.11 E-value=1.3e-09 Score=128.34 Aligned_cols=181 Identities=22% Similarity=0.256 Sum_probs=119.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCcchhhhhhhhhhHHHHHHHHHHH---------hCCCeEEEEcCccc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVGARRVRSLFQAAK---------KKAPCIIFIDEIDA 461 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag--~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar---------~~aP~ILfIDEIDa 461 (794)
+|||.|+||||||++|++++..++ .||+.+......+...|.. .+...+.... .....+||||||+.
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 899999999999999999999875 4798887643333333321 1111010000 01124999999999
Q ss_pred ccccccccccchHHHHHHHHHhhhccc-----------cCCcEEEEEEcCCCC---CCChhhcCCCccceEEEcc-CCCH
Q 003807 462 VGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD---ILDPALTRPGRFDRHIVVP-NPDV 526 (794)
Q Consensus 462 L~~~r~~~~~~~~~~LnqLL~eLDg~~-----------~~~~VIVIaATN~p~---~LD~ALlRpGRFdr~I~V~-lPd~ 526 (794)
+.. .+++.|+..|+.-. ....+.||+|+|..+ .|.++|+. ||+.++.+. .|+.
T Consensus 96 l~~----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 96 LDD----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred CCH----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 943 56777777775321 124588999998765 68889998 999988775 5677
Q ss_pred HHHHHHHHHHhccCC----CCCcc--------------------cHHHHHH-----------HHHHHHHHHHHHHHHhCC
Q 003807 527 RGRQEILELYLQDKP----LADDV--------------------DVKAIAR-----------DLANLVNIAAIKAAVDGG 571 (794)
Q Consensus 527 ~eR~eILk~~l~~~~----l~~dv--------------------dl~~IAr-----------DL~nlvn~Aal~Aa~~~~ 571 (794)
++|.+|++.++.... ..... .+..|+. ....+++-|...|+.+++
T Consensus 164 ~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr 243 (589)
T TIGR02031 164 DLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGR 243 (589)
T ss_pred HHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCC
Confidence 889999988652210 00001 1111211 222455667778889999
Q ss_pred CCCcHHHHHHHHHHHh
Q 003807 572 EKLTATELEFAKDRIL 587 (794)
Q Consensus 572 ~~It~~dl~~Ai~ri~ 587 (794)
..|+.+|+..|..-++
T Consensus 244 ~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 244 TEVTEEDLKLAVELVL 259 (589)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998776
No 181
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.11 E-value=2.3e-09 Score=124.69 Aligned_cols=211 Identities=23% Similarity=0.297 Sum_probs=136.3
Q ss_pred cccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhh----hc-------------------CCCCCceEEEEcCCC
Q 003807 345 NKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFT----RL-------------------GGKLPKGILLTGAPG 401 (794)
Q Consensus 345 ~~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~----~l-------------------G~~~PkgVLL~GPPG 401 (794)
.+.|+.+..+..|.|+.|.+.+-..+..++.. .++..|. ++ +.+..+-+||+||||
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~-WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQ-WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHh-hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 34678888888999999999987776554432 1222222 11 112226689999999
Q ss_pred CcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHH----HhCCCeEEEEcCcccccccccccccchHHHH
Q 003807 402 TGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTL 477 (794)
Q Consensus 402 TGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~L 477 (794)
-||||||+.||+.+|..++.||+|+-.... ....++......- ....|..|+|||||--. ...+
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----------~~~V 404 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----------RAAV 404 (877)
T ss_pred CChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc----------HHHH
Confidence 999999999999999999999999875421 1122232222221 12568999999999653 2233
Q ss_pred HHHHHhhh-------cccc---------CC---cEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 478 HQLLVEMD-------GFEQ---------NE---GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 478 nqLL~eLD-------g~~~---------~~---~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
+.++..+. |-.. +. .-.||+.|| +..-|+|+----|...|.|.+|...-..+-|+..+.
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN--dLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN--DLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec--CccchhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 33333222 1000 00 135788889 556678753224888999999998888888888777
Q ss_pred cCCCCCc-ccHHHHHH----HHHHHHHHHHHHHHHhC
Q 003807 539 DKPLADD-VDVKAIAR----DLANLVNIAAIKAAVDG 570 (794)
Q Consensus 539 ~~~l~~d-vdl~~IAr----DL~nlvn~Aal~Aa~~~ 570 (794)
..++.-+ -.+..++. |+++-+|.....+....
T Consensus 483 rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 483 RENMRADSKALNALCELTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred hhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcc
Confidence 6655422 23444444 99999888877766543
No 182
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.11 E-value=1.5e-10 Score=110.50 Aligned_cols=110 Identities=30% Similarity=0.393 Sum_probs=68.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh--hhhhhhHH------HHHHHHHHHhCCCeEEEEcCcccccc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM--FVGVGARR------VRSLFQAAKKKAPCIIFIDEIDAVGS 464 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~--~vG~~~~~------vr~lF~~Ar~~aP~ILfIDEIDaL~~ 464 (794)
+|||+||||||||++|+.+|..++.+++.++++...+. +.|.-.-. ....+..+. ..++|++||||+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCCH
Confidence 58999999999999999999999999999988764321 11111000 000000000 1468999999998732
Q ss_pred cccccccchHHHHHHHHHhhhcc----------c-cCC------cEEEEEEcCCCC----CCChhhcCCCcc
Q 003807 465 TRKQWEGHTKKTLHQLLVEMDGF----------E-QNE------GIILMAATNLPD----ILDPALTRPGRF 515 (794)
Q Consensus 465 ~r~~~~~~~~~~LnqLL~eLDg~----------~-~~~------~VIVIaATN~p~----~LD~ALlRpGRF 515 (794)
.++..|+..++.- . ... ++.+|+|+|..+ .++++|++ ||
T Consensus 80 ----------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 80 ----------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 3344343333321 0 111 489999999998 89999998 87
No 183
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=6e-10 Score=122.44 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=110.2
Q ss_pred CcccccC-CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC----------------
Q 003807 356 TFKDVKG-CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------------- 418 (794)
Q Consensus 356 tFdDVvG-~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p---------------- 418 (794)
.|+.|+| ++.+++.|+..+. .+++|..+||+||+|+|||++|+++|+.+.++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5889999 8888888877765 46788889999999999999999999987442
Q ss_pred --------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhc
Q 003807 419 --------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 486 (794)
Q Consensus 419 --------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg 486 (794)
+.++... . ...+...++++.+.+.. ....|++|||+|.+. ....|.||..|+.
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~----------~~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT----------ASAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC----------HHHHHHHHHHhcC
Confidence 1111110 0 01123456666655442 234699999999983 4678899999985
Q ss_pred cccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHH
Q 003807 487 FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILEL 535 (794)
Q Consensus 487 ~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~ 535 (794)
+...+++|.+|+.+..|-+.+++ |. .+++|++|+.++..++++.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 45566777788888999999988 55 6799999999888777754
No 184
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.10 E-value=1.5e-10 Score=119.06 Aligned_cols=119 Identities=29% Similarity=0.433 Sum_probs=68.0
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------------------
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------------------- 416 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag------------------- 416 (794)
.|+||+|++.+|..|.-... | ..++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999999965544 3 25899999999999999999998441
Q ss_pred ---------CCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc
Q 003807 417 ---------VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (794)
Q Consensus 417 ---------~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~ 487 (794)
.||....-+.-....+|.+....-..+..|.. .|||+||+-.+ ...++..|+.-|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef----------~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF----------DRSVLDALRQPLEDG 133 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS-----------HHHHHHHHHHHHHS
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc----------CHHHHHHHHHHHHCC
Confidence 12222211111111122211100011222222 49999999877 357788888777542
Q ss_pred -----------ccCCcEEEEEEcCC
Q 003807 488 -----------EQNEGIILMAATNL 501 (794)
Q Consensus 488 -----------~~~~~VIVIaATN~ 501 (794)
....++++|+|+|.
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S
T ss_pred eEEEEECCceEEEecccEEEEEecc
Confidence 12345899999983
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=1.6e-09 Score=127.87 Aligned_cols=255 Identities=11% Similarity=0.093 Sum_probs=142.3
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE-Ee-
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY-RA- 423 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~-is- 423 (794)
..|.....+.+++||+|+++..++|+.++..... +....+.++|+||||||||++++.+|++++..++. .+
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 4566677888999999999998888777664322 22233459999999999999999999998765432 11
Q ss_pred --Ccchhhh------------hhhhhhHHHHHHHHHHHh----------CCCeEEEEcCcccccccccccccchHHHHHH
Q 003807 424 --GSEFEEM------------FVGVGARRVRSLFQAAKK----------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 479 (794)
Q Consensus 424 --~se~~e~------------~vG~~~~~vr~lF~~Ar~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~Lnq 479 (794)
+...... ......+.++.++..+.. ....|||||||+.+... ....+..
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~lq~ 217 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRALHE 217 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHHHHH
Confidence 1100000 001223445555555542 24569999999987542 1234555
Q ss_pred HHH-hhhccccCCcEEEEEEcC-CCC--------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC--
Q 003807 480 LLV-EMDGFEQNEGIILMAATN-LPD--------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP-- 541 (794)
Q Consensus 480 LL~-eLDg~~~~~~VIVIaATN-~p~--------------~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~-- 541 (794)
+|. ... ....+.+|++++ .+. .|.++++...|. .+|.|.+.+.....+.|+..+....
T Consensus 218 lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 218 ILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 554 221 122333333333 221 134677642343 4789999999997777777775431
Q ss_pred CC------CcccHHHHHH----HHHHHHHHHHHHHHH-------hCCCCCcHHHHHHHHHHHhcccccccc---ccchhh
Q 003807 542 LA------DDVDVKAIAR----DLANLVNIAAIKAAV-------DGGEKLTATELEFAKDRILMGTERKTM---FISEES 601 (794)
Q Consensus 542 l~------~dvdl~~IAr----DL~nlvn~Aal~Aa~-------~~~~~It~~dl~~Ai~ri~~g~~~k~~---~ls~ee 601 (794)
.. ....+..|+. |++.+++.-...+.+ .+...++..++..+..+...-...... .+...+
T Consensus 294 ~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~~rd 373 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALGGKD 373 (637)
T ss_pred cccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhhcccc
Confidence 11 1124555554 888887766554332 223455555555444332110000000 112223
Q ss_pred hHHHHHHHhhhHHHhhh
Q 003807 602 KKLTAYHESGHAIVAFN 618 (794)
Q Consensus 602 k~~~A~HEaGHAlva~~ 618 (794)
..+..+|-.|..|-...
T Consensus 374 ~sl~lfhalgkily~Kr 390 (637)
T TIGR00602 374 VSLFLFRALGKILYCKR 390 (637)
T ss_pred chhHHHHHhChhhcccc
Confidence 34566777776665543
No 186
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.09 E-value=2.6e-10 Score=113.98 Aligned_cols=130 Identities=26% Similarity=0.378 Sum_probs=83.1
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-----h
Q 003807 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-----F 431 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~-----~ 431 (794)
|+|.+...+++.+.+..+.. .+.+|||+|++||||+++|++|.... +.||+.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57888887777776665443 23479999999999999999999865 579999999887432 2
Q ss_pred hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc--c-------cCCcEEE
Q 003807 432 VGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--E-------QNEGIIL 495 (794)
Q Consensus 432 vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~--~-------~~~~VIV 495 (794)
.|... .....+|..|..+ +||||||+.|.. ..+..|+..|+.- . ....+.|
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPP----------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-H----------HHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHH----------HHHHHHHHHHhhchhccccccccccccceE
Confidence 23211 1123677777655 999999999954 4555555555421 1 1236899
Q ss_pred EEEcCCCCCCChhhcCCCcc
Q 003807 496 MAATNLPDILDPALTRPGRF 515 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRF 515 (794)
|++|+ ..|...+. .|+|
T Consensus 138 I~st~--~~l~~~v~-~g~f 154 (168)
T PF00158_consen 138 IASTS--KDLEELVE-QGRF 154 (168)
T ss_dssp EEEES--S-HHHHHH-TTSS
T ss_pred EeecC--cCHHHHHH-cCCC
Confidence 99999 45554443 3676
No 187
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=6.2e-10 Score=121.67 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=112.7
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------------
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------------- 418 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p----------------- 418 (794)
.|++|+|++++++.|...+. .+++|..+||+||+|+||+++|+++|..+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 59999999999999988876 46778899999999999999999999986432
Q ss_pred -EEEEeCcchh-h-----h---hhh--------hhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHH
Q 003807 419 -FFYRAGSEFE-E-----M---FVG--------VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKT 476 (794)
Q Consensus 419 -fi~is~se~~-e-----~---~vG--------~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 476 (794)
++.+...... . . ..| -....+|++.+.+.. ....|++||++|.+. ...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------~~a 140 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------EAA 140 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC----------HHH
Confidence 1221110000 0 0 000 112356666555532 345799999999983 467
Q ss_pred HHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 477 LHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 477 LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
.|.||+.|+... +.++|..|+.++.|-+.+++ |. ..+.|++|+.++..++|+...
T Consensus 141 aNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 141 ANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred HHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhh
Confidence 889999998643 33566677889999999998 65 789999999999999998754
No 188
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.6e-10 Score=131.62 Aligned_cols=163 Identities=25% Similarity=0.336 Sum_probs=112.5
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCC-ceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCcchhhh---
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP-KGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEM--- 430 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~P-kgVLL~GPPGTGKT~LArAIA~eag---~pfi~is~se~~e~--- 430 (794)
+.|+|++++...+...|..-+..-. ..+.| ...||.||+|+|||-||+++|..+. ..++.+++|++.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~----dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLG----DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 4589999999888887764221100 11223 3577899999999999999999996 78999999999765
Q ss_pred ---------hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccC---------Cc
Q 003807 431 ---------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN---------EG 492 (794)
Q Consensus 431 ---------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~---------~~ 492 (794)
|+|-... -.+-+..+++..|||++|||+.- +..++|-||..||.-.-. .+
T Consensus 567 SrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKA----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrN 634 (786)
T COG0542 567 SRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKA----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRN 634 (786)
T ss_pred HHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhc----------CHHHHHHHHHHhcCCeeecCCCCEEecce
Confidence 3333221 12334445555689999999887 357888999888753211 24
Q ss_pred EEEEEEcCCCC----------------------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 493 IILMAATNLPD----------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 493 VIVIaATN~p~----------------------------~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
.+||+|||--. .+.|.++. |+|.+|.|.+.+.+...+|+...+.
T Consensus 635 tiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 635 TIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred eEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 78999998331 12344554 7777777777777777777776654
No 189
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.08 E-value=8e-09 Score=107.62 Aligned_cols=168 Identities=22% Similarity=0.352 Sum_probs=122.6
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
|..+.+.+.+++|.+..|+.|.+-...+. .+.+..+|||+|..|||||+|+||+.++. +..++.++-.+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~--------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFA--------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHH--------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 45566789999999999999866544332 24566799999999999999999998876 56788888777
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhC-CCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc--ccCCcEEEEEEcCCCC
Q 003807 427 FEEMFVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQNEGIILMAATNLPD 503 (794)
Q Consensus 427 ~~e~~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~--~~~~~VIVIaATN~p~ 503 (794)
+.. +-.+++..+.. ..-|||+|++- + .+.......|-..|||- ....+|+|-||+|+-.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F--------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLS-F--------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCC-C--------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 654 34555555543 34699999862 1 11233444555566664 2346799999999876
Q ss_pred CCChhh--------------------cCCCccceEEEccCCCHHHHHHHHHHHhccCCCC
Q 003807 504 ILDPAL--------------------TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA 543 (794)
Q Consensus 504 ~LD~AL--------------------lRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~ 543 (794)
.|+... --..||...+.|.+++.++-..|+.+++++..++
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 654221 1135999999999999999999999999887665
No 190
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.05 E-value=9.6e-09 Score=108.20 Aligned_cols=182 Identities=18% Similarity=0.205 Sum_probs=107.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC-CEE--E-EeC----cchhhh---hhhhh------h---HHHHHHH-HHHHhCCC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGV-PFF--Y-RAG----SEFEEM---FVGVG------A---RRVRSLF-QAAKKKAP 451 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~-pfi--~-is~----se~~e~---~vG~~------~---~~vr~lF-~~Ar~~aP 451 (794)
.++|+||+|+|||++++.+++++.. .+. . +++ .++... ..|.. . ..+...+ .....+.+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999998752 222 1 111 111100 11211 0 1122222 22335667
Q ss_pred eEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC---CCC----hhhcCCCccceEEEccCC
Q 003807 452 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILD----PALTRPGRFDRHIVVPNP 524 (794)
Q Consensus 452 ~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~---~LD----~ALlRpGRFdr~I~V~lP 524 (794)
.+|+|||+|.+... ....+..+..... .....+.|+. +..|+ .+. ..+.+ |+...+++++.
T Consensus 125 ~vliiDe~~~l~~~-------~~~~l~~l~~~~~--~~~~~~~vvl-~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~l 192 (269)
T TIGR03015 125 ALLVVDEAQNLTPE-------LLEELRMLSNFQT--DNAKLLQIFL-VGQPEFRETLQSPQLQQLRQ--RIIASCHLGPL 192 (269)
T ss_pred eEEEEECcccCCHH-------HHHHHHHHhCccc--CCCCeEEEEE-cCCHHHHHHHcCchhHHHHh--heeeeeeCCCC
Confidence 89999999998421 1222222222111 1112222222 22332 221 12333 77778899999
Q ss_pred CHHHHHHHHHHHhccCCCC-----CcccHHHHHH-------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 525 DVRGRQEILELYLQDKPLA-----DDVDVKAIAR-------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 525 d~~eR~eILk~~l~~~~l~-----~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
+.++..+++...+...... .+..+..|++ .+..+++.+...|..++.+.|+.++++.++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999888644321 1223444444 788889999888889999999999999998864
No 191
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=2.3e-09 Score=117.86 Aligned_cols=132 Identities=22% Similarity=0.338 Sum_probs=99.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCcchhhhhhhhhhHHHHHHH
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 443 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------------------fi~is~se~~e~~vG~~~~~vr~lF 443 (794)
+++|.++||+||+|+|||++|+++|+.+.+. ++.+...+- -...+.+.+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHH
Confidence 6788899999999999999999999988542 122211000 0012345677776
Q ss_pred HHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEE
Q 003807 444 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 519 (794)
Q Consensus 444 ~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I 519 (794)
+.+.. ....|++||++|.+. ....|.||+.|+. +..++++|.+|+.++.|.|.+++ |+ ..+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~----------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~~~ 160 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMN----------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC-QQQ 160 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCC----------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc-eee
Confidence 66543 345699999999993 4788999999995 45678888999999999999998 76 559
Q ss_pred EccCCCHHHHHHHHHHHh
Q 003807 520 VVPNPDVRGRQEILELYL 537 (794)
Q Consensus 520 ~V~lPd~~eR~eILk~~l 537 (794)
.|++|+.++..+.|+...
T Consensus 161 ~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eCCCcCHHHHHHHHHHhc
Confidence 999999998888887653
No 192
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.1e-09 Score=117.52 Aligned_cols=131 Identities=31% Similarity=0.402 Sum_probs=87.1
Q ss_pred ccc-ccCCHHHHHHHHHHHH-HhcCchhh-hhcCCCC-CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh-hh
Q 003807 357 FKD-VKGCDDAKQELVEVVE-YLKNPSKF-TRLGGKL-PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MF 431 (794)
Q Consensus 357 FdD-VvG~deaK~eL~eiV~-~Lk~p~~~-~~lG~~~-PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e-~~ 431 (794)
+++ |+|++.+|+.|.=.|- ..++-... ..-...+ -.+|||.||.|||||+||+.+|+.+++||...++..+.+ .|
T Consensus 59 Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGY 138 (408)
T COG1219 59 LDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGY 138 (408)
T ss_pred hhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccc
Confidence 444 8999999988854332 11110000 0001112 147999999999999999999999999999999988854 58
Q ss_pred hhhhhHHH-HHHHHHHH----hCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhcc
Q 003807 432 VGVGARRV-RSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGF 487 (794)
Q Consensus 432 vG~~~~~v-r~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~ 487 (794)
+|+....+ -.+++.|. +....||||||||.+.++....+ -..+.++..||..++|-
T Consensus 139 VGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 139 VGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 88765443 33443331 12235999999999987654321 22356778889888874
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=98.99 E-value=8.9e-09 Score=124.59 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=120.6
Q ss_pred EEEEc--CCCCcHHHHHHHHHHhc-----CCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCC------CeEEEEcCcc
Q 003807 394 ILLTG--APGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA------PCIIFIDEID 460 (794)
Q Consensus 394 VLL~G--PPGTGKT~LArAIA~ea-----g~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~a------P~ILfIDEID 460 (794)
-+..| |++.|||++|+++|+++ +.+++.+|+++... ...++++.+.+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 46668 99999999999999997 56899999998532 235666655543322 3699999999
Q ss_pred cccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC
Q 003807 461 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 540 (794)
Q Consensus 461 aL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~ 540 (794)
.+. ...++.|+..|+.+ ...+.+|.+||.+..+.+++++ |+ ..+.|++|+.++....|+..+.+.
T Consensus 641 ~Lt----------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~E 705 (846)
T PRK04132 641 ALT----------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENE 705 (846)
T ss_pred cCC----------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhc
Confidence 994 35788899988853 4567888899999999999987 65 789999999999999998877654
Q ss_pred CCC-CcccHHHHHH----HHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 541 PLA-DDVDVKAIAR----DLANLVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 541 ~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
++. ++..+..|++ |++..+|.....+.. ...|+.+++...
T Consensus 706 gi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~--~~~It~~~V~~~ 750 (846)
T PRK04132 706 GLELTEEGLQAILYIAEGDMRRAINILQAAAAL--DDKITDENVFLV 750 (846)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 433 3445666666 666555554333322 245777766543
No 194
>PRK08116 hypothetical protein; Validated
Probab=98.98 E-value=3.7e-09 Score=113.18 Aligned_cols=123 Identities=22% Similarity=0.311 Sum_probs=75.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhh----hhhHHHHHHHHHHHhCCCeEEEEcCccccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVG----VGARRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG----~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
+.|++|+|+||||||+||.++++++ +.++++++..++...+.. .......++++... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4589999999999999999999986 789999998887654321 11112223443333 33599999986532
Q ss_pred ccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC-CC----CChhhcCCCcc---ceEEEccCCCH
Q 003807 464 STRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DI----LDPALTRPGRF---DRHIVVPNPDV 526 (794)
Q Consensus 464 ~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p-~~----LD~ALlRpGRF---dr~I~V~lPd~ 526 (794)
. .......|...++.... .+..+|.|||.+ +. ++..+.+ |+ ...|.+.-||.
T Consensus 192 ~--------t~~~~~~l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D--------TEWAREKVYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C--------CHHHHHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 12233445555554322 233456677755 33 4555654 53 33566666665
No 195
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.97 E-value=1.8e-08 Score=111.07 Aligned_cols=65 Identities=40% Similarity=0.583 Sum_probs=51.0
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCcch
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEF 427 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~se~ 427 (794)
..+.++|+.++++..--+++.++.... -.+++||.||||||||.||-++|+++| +||..++++++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 356899999999999888887776332 346999999999999999999999997 89998887776
No 196
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.94 E-value=5.5e-09 Score=118.31 Aligned_cols=195 Identities=22% Similarity=0.289 Sum_probs=115.1
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v 432 (794)
.|.+++|.+...+.+.+.+..+... ..+++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPS----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4667899888877776666543322 2369999999999999999998765 46999999988743221
Q ss_pred -----hhhh-------HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCC
Q 003807 433 -----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 491 (794)
Q Consensus 433 -----G~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~ 491 (794)
|... ......|..| ...+|||||||.+.. ..+..|+..++.-. ...
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPL----------NLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCH----------HHHHHHHHHHhhCeEEeCCCCceeee
Confidence 1000 0001112222 245999999999953 34455555544211 112
Q ss_pred cEEEEEEcCCCC-------CCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhccC----CCC-CcccHHHHH---
Q 003807 492 GIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQDK----PLA-DDVDVKAIA--- 552 (794)
Q Consensus 492 ~VIVIaATN~p~-------~LD~ALlRpGRFdr~I~V~lPd~~eR~e----ILk~~l~~~----~l~-~dvdl~~IA--- 552 (794)
++.+|++|+..- .+.+.|.. |+ ..+.+..|..++|.+ ++++++... ... ..++.+.+.
T Consensus 274 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (445)
T TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALE 350 (445)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 578888888441 22222322 22 245677788888875 444444321 111 233433332
Q ss_pred H--------HHHHHHHHHHHHHHHhCCCCCcHHHH
Q 003807 553 R--------DLANLVNIAAIKAAVDGGEKLTATEL 579 (794)
Q Consensus 553 r--------DL~nlvn~Aal~Aa~~~~~~It~~dl 579 (794)
. +|+|++++|+..+ ....|+.+++
T Consensus 351 ~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 351 AHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 2 7888888877654 3345666654
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.94 E-value=4.9e-09 Score=104.07 Aligned_cols=133 Identities=23% Similarity=0.365 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------------------
Q 003807 362 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------------------- 418 (794)
Q Consensus 362 G~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p----------------------- 418 (794)
|++++++.|...+. ..++|..+||+||+|+||+++|+++|+.+-+.
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 67888888877766 56788899999999999999999999977321
Q ss_pred EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEE
Q 003807 419 FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 494 (794)
Q Consensus 419 fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VI 494 (794)
++.++...... .-..+.++++...+.. ....|++|||+|.+. ....|.||+.|+. +..+++
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~----------~~a~NaLLK~LEe--pp~~~~ 134 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT----------EEAQNALLKTLEE--PPENTY 134 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHS--TTTTEE
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh----------HHHHHHHHHHhcC--CCCCEE
Confidence 22222221100 1134566666665533 345699999999993 5789999999995 456788
Q ss_pred EEEEcCCCCCCChhhcCCCccceEEEccC
Q 003807 495 LMAATNLPDILDPALTRPGRFDRHIVVPN 523 (794)
Q Consensus 495 VIaATN~p~~LD~ALlRpGRFdr~I~V~l 523 (794)
+|.+|+.++.|-+.+++ |. ..+.|++
T Consensus 135 fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 135 FILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEECChHHChHHHHh--hc-eEEecCC
Confidence 88889999999999998 65 4566654
No 198
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.93 E-value=1.5e-08 Score=112.20 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=63.8
Q ss_pred Ccc-cccCCHHHHHHHHHHHHHhcCchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------CEEEEeC--
Q 003807 356 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLG-GKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYRAG-- 424 (794)
Q Consensus 356 tFd-DVvG~deaK~eL~eiV~~Lk~p~~~~~lG-~~~PkgVLL~GPPGTGKT~LArAIA~eag~-------pfi~is~-- 424 (794)
-|+ |++|++++++++.+ +++.... | ....+.++|+||||||||+||++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~---~l~~~a~----g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVN---YFKSAAQ----GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHH---HHHHHHh----cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 477 99999999766654 4443321 2 223467899999999999999999999976 9999988
Q ss_pred --cchhhhhhhhhhHHHHHHHHHH
Q 003807 425 --SEFEEMFVGVGARRVRSLFQAA 446 (794)
Q Consensus 425 --se~~e~~vG~~~~~vr~lF~~A 446 (794)
+.+.+..++.....+|..|...
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHH
Confidence 7777777777777777666544
No 199
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.9e-09 Score=117.75 Aligned_cols=155 Identities=25% Similarity=0.348 Sum_probs=109.7
Q ss_pred HHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE-eCcchhhhhhhhhhHHHHHHHHHHHhCCC
Q 003807 373 VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR-AGSEFEEMFVGVGARRVRSLFQAAKKKAP 451 (794)
Q Consensus 373 iV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i-s~se~~e~~vG~~~~~vr~lF~~Ar~~aP 451 (794)
++...++++++ .-..+||.||||+|||.||-.+|...+.||+.+ |..++....-...-..++..|+.|.+..-
T Consensus 526 lv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 45555665552 225799999999999999999999999999975 44444443333334678999999999888
Q ss_pred eEEEEcCcccccccccccccchHHHHHHHHHhhhccccC-CcEEEEEEcCCCCCCC-hhhcCCCccceEEEccCCCH-HH
Q 003807 452 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILD-PALTRPGRFDRHIVVPNPDV-RG 528 (794)
Q Consensus 452 ~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~-~~VIVIaATN~p~~LD-~ALlRpGRFdr~I~V~lPd~-~e 528 (794)
+||++|+|+.|..--.-+...++.++..|+..+....+. .+.+|++||.+.+.|. -.++. .|+..+.||.... ++
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQ 677 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHH
Confidence 999999999985422222234566777777777765444 3578888888665553 23444 7999999987665 56
Q ss_pred HHHHHHH
Q 003807 529 RQEILEL 535 (794)
Q Consensus 529 R~eILk~ 535 (794)
..+++..
T Consensus 678 ~~~vl~~ 684 (744)
T KOG0741|consen 678 LLEVLEE 684 (744)
T ss_pred HHHHHHH
Confidence 6666654
No 200
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.92 E-value=4.9e-08 Score=104.03 Aligned_cols=64 Identities=39% Similarity=0.575 Sum_probs=49.2
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCcch
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEF 427 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~se~ 427 (794)
=..++|+.++.+..--+++.++...- ..+++||.||||||||.||-+|+.|+| +||.-+.+|+.
T Consensus 37 ~~g~vGQ~~AReAagiivdlik~Kkm-------aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEv 102 (456)
T KOG1942|consen 37 AAGFVGQENAREAAGIIVDLIKSKKM-------AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEV 102 (456)
T ss_pred ccccccchhhhhhhhHHHHHHHhhhc-------cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhh
Confidence 34569999998887777776654322 235899999999999999999999995 78866655544
No 201
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.91 E-value=2.9e-08 Score=114.66 Aligned_cols=143 Identities=28% Similarity=0.382 Sum_probs=89.2
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC----------CEEEEeC
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV----------PFFYRAG 424 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~----------pfi~is~ 424 (794)
..|.++.|+..+++.+.-. ......++|+||||+|||++++.+++...- .++.+.+
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4799999998877654211 112247999999999999999999875421 0111111
Q ss_pred c----------chh--------hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhc
Q 003807 425 S----------EFE--------EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 486 (794)
Q Consensus 425 s----------e~~--------e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg 486 (794)
. -|. ...+|.+...-...+..|..+ +|||||++.+. ..++..|+..|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~----------~~~~~~L~~~LE~ 320 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFE----------RRTLDALREPIES 320 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCC----------HHHHHHHHHHHHc
Confidence 0 011 112232221122345555443 99999998873 3556666665532
Q ss_pred cc-----------cCCcEEEEEEcCCCC---------------------CCChhhcCCCccceEEEccCCCH
Q 003807 487 FE-----------QNEGIILMAATNLPD---------------------ILDPALTRPGRFDRHIVVPNPDV 526 (794)
Q Consensus 487 ~~-----------~~~~VIVIaATN~p~---------------------~LD~ALlRpGRFdr~I~V~lPd~ 526 (794)
-. ...++.+|+|+|... .|..+++. |||.++.++.|+.
T Consensus 321 g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~ 390 (506)
T PRK09862 321 GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPP 390 (506)
T ss_pred CcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCH
Confidence 11 234689999999652 36668887 9999999998853
No 202
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1e-08 Score=113.32 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=99.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------------------------EEEeCcchh-------------
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------------------------FYRAGSEFE------------- 428 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~pf-------------------------i~is~se~~------------- 428 (794)
..++|.++||+||+|+||+++|+++|..+.+.. +.+......
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 358899999999999999999999999875521 111110000
Q ss_pred ---hh------h-hhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEE
Q 003807 429 ---EM------F-VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 494 (794)
Q Consensus 429 ---e~------~-vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VI 494 (794)
+. . ...+.+.+|++.+.+.. +...|++||++|.+. ....|.||+.|+ ++..+++
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLE--EPp~~t~ 164 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN----------VAAANALLKTLE--EPPPGTV 164 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC----------HHHHHHHHHHhc--CCCcCcE
Confidence 00 0 01233567776665432 234599999999994 478899999999 4677888
Q ss_pred EEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHH
Q 003807 495 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY 536 (794)
Q Consensus 495 VIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~ 536 (794)
+|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 165 fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 165 FLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 99999999999999998 76 78999999999998888763
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.90 E-value=2e-08 Score=111.91 Aligned_cols=160 Identities=27% Similarity=0.401 Sum_probs=101.9
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEE-----
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYR----- 422 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-------g~pfi~i----- 422 (794)
..|.-++|++..|..|-- + .-+|+. .|+||.|+.|||||+++||||.-+ |+||-.-
T Consensus 14 ~pf~aivGqd~lk~aL~l--~-av~P~i---------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGL--N-AVDPQI---------GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhh--h-hccccc---------ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 468899999999887732 1 223322 489999999999999999999966 3433210
Q ss_pred -eCcc-------------------hhhhhhhhhhHHHHH---HHHH-------------HHhCCCeEEEEcCcccccccc
Q 003807 423 -AGSE-------------------FEEMFVGVGARRVRS---LFQA-------------AKKKAPCIIFIDEIDAVGSTR 466 (794)
Q Consensus 423 -s~se-------------------~~e~~vG~~~~~vr~---lF~~-------------Ar~~aP~ILfIDEIDaL~~~r 466 (794)
.|.+ +...-.|.++.++-. +-+. |+.+ -.|+||||+..|.
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~--- 157 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD--- 157 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc---
Confidence 0111 111112222221110 1111 1111 2499999998883
Q ss_pred cccccchHHHHHHHHHhhhc---------c--ccCCcEEEEEEcCCCC-CCChhhcCCCccceEEEccCC-CHHHHHHHH
Q 003807 467 KQWEGHTKKTLHQLLVEMDG---------F--EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNP-DVRGRQEIL 533 (794)
Q Consensus 467 ~~~~~~~~~~LnqLL~eLDg---------~--~~~~~VIVIaATN~p~-~LD~ALlRpGRFdr~I~V~lP-d~~eR~eIL 533 (794)
...++.||..+.. + .-..++++|||+|..+ .|-+-|+. ||...|.+..| +.++|.+|.
T Consensus 158 -------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 158 -------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred -------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHH
Confidence 4677777765543 2 2234689999999653 57777877 99999998655 678999999
Q ss_pred HHHhcc
Q 003807 534 ELYLQD 539 (794)
Q Consensus 534 k~~l~~ 539 (794)
++.+..
T Consensus 229 ~r~~~f 234 (423)
T COG1239 229 RRRLAF 234 (423)
T ss_pred HHHHHh
Confidence 887654
No 204
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.87 E-value=2.3e-08 Score=107.85 Aligned_cols=188 Identities=19% Similarity=0.183 Sum_probs=125.0
Q ss_pred cccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE----
Q 003807 345 NKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF---- 420 (794)
Q Consensus 345 ~~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi---- 420 (794)
+..|.+.+++.+++|++++++....+.++.+ -.++| +.|+|||||||||+...+.|..+-.|.-
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~~~~-----------~~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m 95 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENRYSG-----------MPGLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSM 95 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHHhcc-----------CCCCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhH
Confidence 4577888888899999999999777766533 23455 8999999999999999999998877511
Q ss_pred --EEeCcchhhhhhhhhhHHHHHHHHHHHh-------CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCC
Q 003807 421 --YRAGSEFEEMFVGVGARRVRSLFQAAKK-------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 491 (794)
Q Consensus 421 --~is~se~~e~~vG~~~~~vr~lF~~Ar~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~ 491 (794)
.++.++-.. .+. .+.-...|..++. ..+..+++||.|++. ...+|+|-+.++.+..+.
T Consensus 96 ~lelnaSd~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT----------~~AQnALRRviek~t~n~ 162 (360)
T KOG0990|consen 96 LLELNASDDRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT----------RDAQNALRRVIEKYTANT 162 (360)
T ss_pred HHHhhccCccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecchhHhh----------HHHHHHHHHHHHHhccce
Confidence 112222111 011 1122245555553 267899999999994 467788888888766665
Q ss_pred cEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHH----HHHHHHHHH
Q 003807 492 GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVKAIAR----DLANLVNIA 562 (794)
Q Consensus 492 ~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~d-vdl~~IAr----DL~nlvn~A 562 (794)
.+. ..+|.+..+.|++++ || ..+.+.+-+...-...+.++.....+.-. .-...+++ |+...+|..
T Consensus 163 rF~--ii~n~~~ki~pa~qs--Rc-trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~L 233 (360)
T KOG0990|consen 163 RFA--TISNPPQKIHPAQQS--RC-TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYL 233 (360)
T ss_pred EEE--EeccChhhcCchhhc--cc-ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHH
Confidence 555 567999999999987 66 34566666666777777777765443322 22333444 555554443
No 205
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.86 E-value=6.5e-09 Score=104.29 Aligned_cols=110 Identities=26% Similarity=0.336 Sum_probs=72.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC----CEEEEeCcchhhhhhhhhhHHHHHHHHHHH----hCCCeEEEEcCccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVG 463 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~----pfi~is~se~~e~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~ 463 (794)
..+||+||+|||||.+|+++|..+.. +++.++++++... +.....+..++..+. .....||||||||...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 36899999999999999999999996 9999999998761 111122222222110 0111299999999997
Q ss_pred cccccccc-chHHHHHHHHHhhhccc---------cCCcEEEEEEcCCCC
Q 003807 464 STRKQWEG-HTKKTLHQLLVEMDGFE---------QNEGIILMAATNLPD 503 (794)
Q Consensus 464 ~~r~~~~~-~~~~~LnqLL~eLDg~~---------~~~~VIVIaATN~p~ 503 (794)
+..+.... ....+++.||..||+-. .-.++++|+|+|.-.
T Consensus 82 ~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 74222111 22466777887776421 123589999999654
No 206
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.85 E-value=3.3e-08 Score=112.86 Aligned_cols=197 Identities=22% Similarity=0.302 Sum_probs=118.1
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh-
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF- 431 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~- 431 (794)
.|.+++|.+.....+.+.+..+... ...+||+|++|||||++|++++... +.||+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678999988877777666543322 2369999999999999999998876 5799999998874321
Q ss_pred ----hhhhhH-------HHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCC
Q 003807 432 ----VGVGAR-------RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 491 (794)
Q Consensus 432 ----vG~~~~-------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~ 491 (794)
.|.... .....|..+ ....|||||||.+.. ..+..|+..++.-. ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~~~~ 272 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPL----------DVQTRLLRVLADGQFYRVGGYAPVKV 272 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCH----------HHHHHHHHHHhcCcEEeCCCCCeEEe
Confidence 111000 000112222 235899999999954 34445555554311 123
Q ss_pred cEEEEEEcCCCC-------CCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhccC----CCC-CcccHHHH---H
Q 003807 492 GIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQDK----PLA-DDVDVKAI---A 552 (794)
Q Consensus 492 ~VIVIaATN~p~-------~LD~ALlRpGRFdr~I~V~lPd~~eR~e----ILk~~l~~~----~l~-~dvdl~~I---A 552 (794)
.+.+|+||+..- .+.+.|.. ||. .+.+..|..++|.+ +++++++.. ... ..++.+.+ .
T Consensus 273 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 349 (469)
T PRK10923 273 DVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT 349 (469)
T ss_pred eEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 468888887431 23333333 331 45666777777764 555555432 111 12333333 2
Q ss_pred H--------HHHHHHHHHHHHHHHhCCCCCcHHHHHH
Q 003807 553 R--------DLANLVNIAAIKAAVDGGEKLTATELEF 581 (794)
Q Consensus 553 r--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~ 581 (794)
. +|+|+++++++.+ ....|+.+|+..
T Consensus 350 ~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~ 383 (469)
T PRK10923 350 RLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPG 383 (469)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcH
Confidence 2 8888888887665 345677777643
No 207
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=4.2e-08 Score=107.85 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=98.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE--EEEeCc--------------chh--hhhh--hhhhHHHHHHHHHH
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF--FYRAGS--------------EFE--EMFV--GVGARRVRSLFQAA 446 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~pf--i~is~s--------------e~~--e~~v--G~~~~~vr~lF~~A 446 (794)
.+++|.++||+||+|+||+++|+++|+.+.+.- -.-.|. ++. .... ..+...+|++.+.+
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKV 99 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHH
Confidence 467888999999999999999999999774411 000111 110 0000 12355677766555
Q ss_pred Hh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEcc
Q 003807 447 KK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVP 522 (794)
Q Consensus 447 r~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~ 522 (794)
.. +...|++||++|.+. ....|.||+.|+. +..++++|.+|+.++.|-|.+++ |. ..+.|+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~----------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~ 164 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLT----------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIH 164 (325)
T ss_pred hhccccCCceEEEEechhhhC----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEeCC
Confidence 43 334699999999994 4788999999995 66778888899999999999987 65 678999
Q ss_pred CCCHHHHHHHHHHH
Q 003807 523 NPDVRGRQEILELY 536 (794)
Q Consensus 523 lPd~~eR~eILk~~ 536 (794)
+|+.++..+.|...
T Consensus 165 ~~~~~~~~~~L~~~ 178 (325)
T PRK06871 165 PPEEQQALDWLQAQ 178 (325)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999888877654
No 208
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.84 E-value=4.4e-08 Score=111.15 Aligned_cols=196 Identities=24% Similarity=0.349 Sum_probs=116.7
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh-
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF- 431 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~- 431 (794)
.+.+++|.+.....+.+.+..+... ...+|++|++||||+++|+++.... +.||+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALS----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCC----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 4567888887766665555443332 2369999999999999999998764 5799999998874321
Q ss_pred ----hhhhhH-------HHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCC
Q 003807 432 ----VGVGAR-------RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 491 (794)
Q Consensus 432 ----vG~~~~-------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~ 491 (794)
.|.... .....|..| ...+|||||||.+.. ..+..|+..++.-. ...
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~~~~ 277 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPL----------VLQAKLLRILQEREFERIGGHQTIKV 277 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeee
Confidence 111000 001122222 235999999999954 34555555554311 113
Q ss_pred cEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----CCC-CcccHHHH---H
Q 003807 492 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PLA-DDVDVKAI---A 552 (794)
Q Consensus 492 ~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~~----~l~-~dvdl~~I---A 552 (794)
++.||++||.. +. .+.+.|+|.. .+.+..|..++|.+ ++.+++.+. ... ..++.+.+ .
T Consensus 278 ~~rii~~t~~~--l~-~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 354 (457)
T PRK11361 278 DIRIIAATNRD--LQ-AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLT 354 (457)
T ss_pred ceEEEEeCCCC--HH-HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 47889999843 22 2333345443 56778888888865 344444322 111 23343333 2
Q ss_pred H--------HHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 553 R--------DLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 553 r--------DL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
. +|.+++++|...+ ....|+.+|+.
T Consensus 355 ~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~ 387 (457)
T PRK11361 355 AWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLP 387 (457)
T ss_pred cCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHCh
Confidence 2 7888888876543 34567777664
No 209
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.1e-08 Score=115.44 Aligned_cols=47 Identities=47% Similarity=0.736 Sum_probs=39.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
...|.||+|++.+|+.|..... | -+++|++||||||||++|+-+.+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G---gHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G---GHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c---CCcEEEecCCCCchHHhhhhhccc
Confidence 3479999999999999965443 2 248999999999999999998763
No 210
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=5.8e-08 Score=106.51 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=95.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---------------------EEEEe--Ccchhhh-hhhhhhHHHHHH
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------------------FFYRA--GSEFEEM-FVGVGARRVRSL 442 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~p---------------------fi~is--~se~~e~-~vG~~~~~vr~l 442 (794)
.+++|..+||+||+|+||+++|.++|..+.+. |+.+. ...-... ....+.+.+|++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 46789899999999999999999999877432 11110 0000000 001234566777
Q ss_pred HHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceE
Q 003807 443 FQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRH 518 (794)
Q Consensus 443 F~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~ 518 (794)
.+.+.. +.-.|++||++|.+. ....|.||+.|+. +..++++|.+|+.++.|-|.+++ |+ ..
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~ 166 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAIN----------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-QR 166 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhhC----------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-eE
Confidence 665543 233699999999993 4788999999995 45567777788889999999998 76 67
Q ss_pred EEccCCCHHHHHHHHHH
Q 003807 519 IVVPNPDVRGRQEILEL 535 (794)
Q Consensus 519 I~V~lPd~~eR~eILk~ 535 (794)
+.|+.|+.++-.+.|..
T Consensus 167 i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 167 LEFKLPPAHEALAWLLA 183 (319)
T ss_pred eeCCCcCHHHHHHHHHH
Confidence 89999999887777764
No 211
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.79 E-value=8.8e-08 Score=115.91 Aligned_cols=160 Identities=19% Similarity=0.145 Sum_probs=91.3
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhh-----------cCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------CCE
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTR-----------LGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-------VPF 419 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~-----------lG~~~PkgVLL~GPPGTGKT~LArAIA~eag-------~pf 419 (794)
-.|.|++.+|+.+ ++..+....+... ...+-..+|||+|+||||||.+|++++.-.. .++
T Consensus 450 P~I~G~e~vK~ai--lL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~ 527 (915)
T PTZ00111 450 PSIKARNNVKIGL--LCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSS 527 (915)
T ss_pred CeEECCHHHHHHH--HHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCC
Confidence 4578888888766 3333332211100 1123334799999999999999999998553 344
Q ss_pred EEEeCcchhhhhhh--hhhHHH-HHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--------
Q 003807 420 FYRAGSEFEEMFVG--VGARRV-RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-------- 488 (794)
Q Consensus 420 i~is~se~~e~~vG--~~~~~v-r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~-------- 488 (794)
..+.+..... +.+ .+...+ ...+..| ...+++|||+|.+.. .....|+..|+.-.
T Consensus 528 s~vgLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms~----------~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 528 SSVGLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCHN----------ESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred ccccccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhCCH----------HHHHHHHHHHhCCEEEEecCCc
Confidence 4443333211 000 000000 0011111 235999999999843 34455555554311
Q ss_pred ---cCCcEEEEEEcCCCC-------------CCChhhcCCCccceEEE-ccCCCHHHHHHHHHH
Q 003807 489 ---QNEGIILMAATNLPD-------------ILDPALTRPGRFDRHIV-VPNPDVRGRQEILEL 535 (794)
Q Consensus 489 ---~~~~VIVIaATN~p~-------------~LD~ALlRpGRFdr~I~-V~lPd~~eR~eILk~ 535 (794)
-+.++.||||+|... .|+++|++ |||..+. ++.|+.+.=..|-++
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 134688999999642 46789998 9999754 467776554444333
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=7.4e-08 Score=106.37 Aligned_cols=131 Identities=16% Similarity=0.220 Sum_probs=97.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCcchhhhhhhhhhHHHHHH
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSL 442 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------------------fi~is~se~~e~~vG~~~~~vr~l 442 (794)
.+++|..+||+||+|+||+++|+++|..+-+. ++.+....- . ...+.+.+|++
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l 96 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREV 96 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHH
Confidence 46889999999999999999999999977431 111111000 0 01234566766
Q ss_pred HHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceE
Q 003807 443 FQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRH 518 (794)
Q Consensus 443 F~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~ 518 (794)
.+.+.. +...|++||++|.+. .+..|.||+.|+. +..+.++|..|+.++.|-|.+++ |. ..
T Consensus 97 ~~~~~~~~~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RC-q~ 161 (334)
T PRK07993 97 TEKLYEHARLGGAKVVWLPDAALLT----------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RC-RL 161 (334)
T ss_pred HHHHhhccccCCceEEEEcchHhhC----------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-cc
Confidence 665542 345699999999993 5788999999995 66778888999999999999998 66 36
Q ss_pred EEccCCCHHHHHHHHHH
Q 003807 519 IVVPNPDVRGRQEILEL 535 (794)
Q Consensus 519 I~V~lPd~~eR~eILk~ 535 (794)
+.|++|+.++..+.|..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 HYLAPPPEQYALTWLSR 178 (334)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 89999998888777754
No 213
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.2e-07 Score=103.88 Aligned_cols=131 Identities=17% Similarity=0.254 Sum_probs=96.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------------------EEEEeCcchhhhhhhhhhHHHHHHH
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-----------------------FFYRAGSEFEEMFVGVGARRVRSLF 443 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-----------------------fi~is~se~~e~~vG~~~~~vr~lF 443 (794)
.+++|.++||+||.|+||+.+|+++|..+.+. |+.+....- .. ..+.+.+|++-
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~vdqiR~l~ 97 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GK--SITVEQIRQCN 97 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CC--cCCHHHHHHHH
Confidence 46889999999999999999999999976431 222211100 00 01335666665
Q ss_pred HHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEE
Q 003807 444 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 519 (794)
Q Consensus 444 ~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I 519 (794)
+.+.. +...|++||++|.+. ....|.||+.++. +..++++|..|+.++.|-|.+++ |. ..+
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~ 162 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAMN----------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-QQW 162 (319)
T ss_pred HHHhhCcccCCceEEEecchhhhC----------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-eeE
Confidence 55432 334699999999993 4788999999995 56678888899999999999988 65 678
Q ss_pred EccCCCHHHHHHHHHH
Q 003807 520 VVPNPDVRGRQEILEL 535 (794)
Q Consensus 520 ~V~lPd~~eR~eILk~ 535 (794)
.|++|+.++..+.|..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999888877754
No 214
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.74 E-value=1.6e-07 Score=111.39 Aligned_cols=92 Identities=28% Similarity=0.360 Sum_probs=61.3
Q ss_pred cEEEEEEcCCC--CCCChhhcCCCccc---eEEEcc--CCC-HHHHHHHHHHHhccCC---CCCcccHHHHHH-------
Q 003807 492 GIILMAATNLP--DILDPALTRPGRFD---RHIVVP--NPD-VRGRQEILELYLQDKP---LADDVDVKAIAR------- 553 (794)
Q Consensus 492 ~VIVIaATN~p--~~LD~ALlRpGRFd---r~I~V~--lPd-~~eR~eILk~~l~~~~---l~~dvdl~~IAr------- 553 (794)
.+.||+++|.. ..+|++|.. ||. ..+.++ .++ .+.+..+++...+... ....++.+.+++
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57889998875 457899987 775 445553 233 3445555554333221 123455444433
Q ss_pred -------------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 003807 554 -------------DLANLVNIAAIKAAVDGGEKLTATELEFAKDR 585 (794)
Q Consensus 554 -------------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~r 585 (794)
+|.+++++|...|..++.+.++.+|+..|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 77889999999999999999999999988754
No 215
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.8e-08 Score=104.28 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=59.6
Q ss_pred eEEEEcCcccccccccccc-cch-HHHHHHHHHhhhccc--------cCCcEEEEEEcC----CCCCCChhhcCCCccce
Q 003807 452 CIIFIDEIDAVGSTRKQWE-GHT-KKTLHQLLVEMDGFE--------QNEGIILMAATN----LPDILDPALTRPGRFDR 517 (794)
Q Consensus 452 ~ILfIDEIDaL~~~r~~~~-~~~-~~~LnqLL~eLDg~~--------~~~~VIVIaATN----~p~~LD~ALlRpGRFdr 517 (794)
.||||||||.++.+.+.+. +.+ +.++..||-.++|-. +...+++||+-- .|.+|=|.|. |||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 3999999999987654322 222 445566777777642 344688888753 6778888886 69999
Q ss_pred EEEccCCCHHHHHHHHH
Q 003807 518 HIVVPNPDVRGRQEILE 534 (794)
Q Consensus 518 ~I~V~lPd~~eR~eILk 534 (794)
.+++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999998888774
No 216
>PRK15115 response regulator GlrR; Provisional
Probab=98.74 E-value=1.5e-07 Score=106.60 Aligned_cols=191 Identities=20% Similarity=0.311 Sum_probs=112.8
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhhh
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG 435 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~~ 435 (794)
.++|.......+.+.+..+.. ....++|+|++|||||++|+++.... +.||+.++|..+.+....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~-- 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE-- 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH--
Confidence 466766654444443333222 12369999999999999999998865 579999999877432211
Q ss_pred hHHHHHHHHHH---------------HhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCC
Q 003807 436 ARRVRSLFQAA---------------KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 491 (794)
Q Consensus 436 ~~~vr~lF~~A---------------r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~ 491 (794)
..+|..+ ......+|||||||.+.. ..+..|+..++.-. ...
T Consensus 203 ----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~----------~~q~~L~~~l~~~~~~~~g~~~~~~~ 268 (444)
T PRK15115 203 ----SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA----------PLQVKLLRVLQERKVRPLGSNRDIDI 268 (444)
T ss_pred ----HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCH----------HHHHHHHHHHhhCCEEeCCCCceeee
Confidence 1122111 111235999999999954 34455555554211 112
Q ss_pred cEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----C-CCCcccHHHHH---
Q 003807 492 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P-LADDVDVKAIA--- 552 (794)
Q Consensus 492 ~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~~----~-l~~dvdl~~IA--- 552 (794)
++.+|++|+. .++..+.+ |+|.. .+.+..|..++|.+ +++++++.. . ....++.+.+.
T Consensus 269 ~~rii~~~~~--~l~~~~~~-~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (444)
T PRK15115 269 DVRIISATHR--DLPKAMAR-GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM 345 (444)
T ss_pred eEEEEEeCCC--CHHHHHHc-CCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 5788999884 34444433 56532 56777888888864 445555432 1 11224433333
Q ss_pred H--------HHHHHHHHHHHHHHHhCCCCCcHHHHHH
Q 003807 553 R--------DLANLVNIAAIKAAVDGGEKLTATELEF 581 (794)
Q Consensus 553 r--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~ 581 (794)
. +|.|++++|+..+ ....|+.+++..
T Consensus 346 ~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~ 379 (444)
T PRK15115 346 TASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQ 379 (444)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhh
Confidence 2 7888888876543 345677776643
No 217
>PRK12377 putative replication protein; Provisional
Probab=98.74 E-value=7.1e-08 Score=102.38 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhhh--hHHHHHHHHHHHhCCCeEEEEcCcccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG--ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 466 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~~--~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 466 (794)
.+++|+||||||||+||.|||+++ |..+++++..++.......- .....++++.. ....+|+|||++.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s- 178 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET- 178 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC-
Confidence 589999999999999999999987 67788888877765432110 01122333333 34579999999776321
Q ss_pred cccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 467 KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 467 ~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
......+.+++..-- ....-+|.|||..
T Consensus 179 ----~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 179 ----KNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred ----HHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 122344555544321 2222345578854
No 218
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.72 E-value=2e-08 Score=96.55 Aligned_cols=105 Identities=29% Similarity=0.452 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCcchhhhhhhhhhH
Q 003807 361 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEMFVGVGAR 437 (794)
Q Consensus 361 vG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag---~pfi~is~se~~e~~vG~~~~ 437 (794)
+|...+.+++.+-+..+.... ..|||+|+|||||+++|++|+...+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSS----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSS----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 466777777777777655432 3699999999999999999998775 367776666543
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 438 RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 438 ~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
.++++.+ .+.+|||+|||.+.. ..+..|+..++... +.++.+|+++.
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~----------~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSP----------EAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-H----------HHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred --HHHHHHc---CCCEEEECChHHCCH----------HHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 3455555 446999999999943 44455555555432 34456666665
No 219
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.7e-08 Score=108.01 Aligned_cols=95 Identities=29% Similarity=0.477 Sum_probs=70.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh-hhhhhhhhH-HHHHHHHHHH----hCCCeEEEEcCcccccccc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE-EMFVGVGAR-RVRSLFQAAK----KKAPCIIFIDEIDAVGSTR 466 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~-e~~vG~~~~-~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r 466 (794)
+|||.||+|+|||+||+.+|+-+++||..++|..+. ..|+|+..+ -+..++..|. +....||||||+|.++.+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 799999999999999999999999999999999884 568887543 3445555542 1234699999999998543
Q ss_pred ccc----ccchHHHHHHHHHhhhcc
Q 003807 467 KQW----EGHTKKTLHQLLVEMDGF 487 (794)
Q Consensus 467 ~~~----~~~~~~~LnqLL~eLDg~ 487 (794)
... +-..+.++..||..++|-
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred ccccccccccchhHHHHHHHHhccc
Confidence 221 112356677788877763
No 220
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.67 E-value=5e-07 Score=105.52 Aligned_cols=186 Identities=19% Similarity=0.251 Sum_probs=117.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeCcchhhh---h-------hhhh------hHHHHHHHHHH
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEFEEM---F-------VGVG------ARRVRSLFQAA 446 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea----------g~pfi~is~se~~e~---~-------vG~~------~~~vr~lF~~A 446 (794)
.+++.|-||||||.+++.+-.++ ..+|+.+|+-.+.+. | .|.. ...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 78999999999999999998855 346788888666332 2 1111 12222223211
Q ss_pred -HhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhc--CCCccc-eEEEcc
Q 003807 447 -KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT--RPGRFD-RHIVVP 522 (794)
Q Consensus 447 -r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALl--RpGRFd-r~I~V~ 522 (794)
....++||+|||+|.|..+ .+.++..++..-- .++.+++||+..|..+....-|. -..|++ +++.|.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~ 574 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQ 574 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccceeeecC
Confidence 1245789999999999763 3456665554322 35677888888886554322221 012444 378999
Q ss_pred CCCHHHHHHHHHHHhccCCCCCcccHHHHHH----------HHHHHHHHHHHHHHHhCC-------CCCcHHHHHHHHHH
Q 003807 523 NPDVRGRQEILELYLQDKPLADDVDVKAIAR----------DLANLVNIAAIKAAVDGG-------EKLTATELEFAKDR 585 (794)
Q Consensus 523 lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr----------DL~nlvn~Aal~Aa~~~~-------~~It~~dl~~Ai~r 585 (794)
+++..+..+|+...++....-..--.+.+|+ ...++|++|+-.|..+.. ..|++.|+..|++.
T Consensus 575 pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~e 654 (767)
T KOG1514|consen 575 PYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINE 654 (767)
T ss_pred CCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHH
Confidence 9999999999999887763322333344444 334667777766665544 45677777777665
Q ss_pred Hh
Q 003807 586 IL 587 (794)
Q Consensus 586 i~ 587 (794)
..
T Consensus 655 m~ 656 (767)
T KOG1514|consen 655 ML 656 (767)
T ss_pred Hh
Confidence 44
No 221
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.67 E-value=1.3e-07 Score=107.65 Aligned_cols=198 Identities=25% Similarity=0.373 Sum_probs=114.5
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh-
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV- 432 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v- 432 (794)
+.+++|......++.+.+..+... ..++++.|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 456888888877776655543322 2369999999999999999998864 57999999987743211
Q ss_pred ----hhhhH-------HHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCCc
Q 003807 433 ----GVGAR-------RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEG 492 (794)
Q Consensus 433 ----G~~~~-------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~~ 492 (794)
|.... .....|. ....++|||||||.+.. .....|+..++.-. ...+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~~----------~~q~~ll~~l~~~~~~~~~~~~~~~~~ 269 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMPL----------DAQTRLLRVLADGEFYRVGGRTPIKVD 269 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCCH----------HHHHHHHHHHhcCcEEECCCCceeeee
Confidence 11000 0001111 12356899999999954 33444554443211 1225
Q ss_pred EEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHH----HHHHHHhccC----CC-CCcccHHHHHH---
Q 003807 493 IILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQ----EILELYLQDK----PL-ADDVDVKAIAR--- 553 (794)
Q Consensus 493 VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~----eILk~~l~~~----~l-~~dvdl~~IAr--- 553 (794)
+.||++|+.. ++ .+...|+|.. .+.+..|..++|. .++++++... .. ...++.+.+..
T Consensus 270 ~rii~~~~~~--l~-~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (463)
T TIGR01818 270 VRIVAATHQN--LE-ALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQ 346 (463)
T ss_pred eEEEEeCCCC--HH-HHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 7788888743 22 2222234431 3455566665554 3555554332 11 12344333322
Q ss_pred --------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 554 --------DLANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 554 --------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+|.+++++|++.+ ....|+.+|+...+
T Consensus 347 ~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 347 LRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 8888888887665 34567877775443
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.66 E-value=1.3e-07 Score=100.15 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=77.9
Q ss_pred CCCccccc-CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhh
Q 003807 354 VKTFKDVK-GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (794)
Q Consensus 354 ~~tFdDVv-G~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e 429 (794)
..+|++.. +.+..+..+..+..+.++... ...+++|+|+||||||+|+.++|.++ +..+++++..++..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~~-------~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFDG-------NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhcc-------CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 34677765 333433444444444432111 12489999999999999999999987 77888998888765
Q ss_pred hhhhh---hhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 430 MFVGV---GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 430 ~~vG~---~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
.+... .......+++... ..++|+|||++..... ......+.+++..- ....-.+|.+||..
T Consensus 141 ~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s-----~~~~~~l~~Ii~~R----y~~~~~tiitSNl~ 205 (244)
T PRK07952 141 AMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTES-----RYEKVIINQIVDRR----SSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCCC-----HHHHHHHHHHHHHH----HhCCCCEEEeCCCC
Confidence 43321 1112234444443 4579999999886421 12244556665432 11122455578854
No 223
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.64 E-value=1.2e-08 Score=97.78 Aligned_cols=111 Identities=29% Similarity=0.351 Sum_probs=58.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc-ch-hhhhhhhhhHHHH-HHHHHHHh-CCCeEEEEcCcccccccccc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS-EF-EEMFVGVGARRVR-SLFQAAKK-KAPCIIFIDEIDAVGSTRKQ 468 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~s-e~-~e~~vG~~~~~vr-~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~ 468 (794)
+|||+|+||+|||++|+++|+.++..|..+.+. ++ .....|...-... .-|...+. --..|+++|||....
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 589999999999999999999999999888764 22 1222222100000 00000000 001499999998874
Q ss_pred cccchHHHHHHHHHhhhcc---------ccCCcEEEEEEcCCCC-----CCChhhcCCCcc
Q 003807 469 WEGHTKKTLHQLLVEMDGF---------EQNEGIILMAATNLPD-----ILDPALTRPGRF 515 (794)
Q Consensus 469 ~~~~~~~~LnqLL~eLDg~---------~~~~~VIVIaATN~p~-----~LD~ALlRpGRF 515 (794)
.++++.||+.|... .-...++||||-|..+ .|+.+++. ||
T Consensus 76 -----pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 -----PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -----HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -----HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 36777888777532 2234589999999765 56777776 66
No 224
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.63 E-value=1.7e-07 Score=105.91 Aligned_cols=194 Identities=25% Similarity=0.364 Sum_probs=112.7
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh---
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV--- 432 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v--- 432 (794)
.++|.......+.+-+..+.. ....++++|++||||+++|+++.... +.||+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 467777666666554443332 22479999999999999999998654 57999999987643221
Q ss_pred --hhhhHH-------HHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCCcEE
Q 003807 433 --GVGARR-------VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGII 494 (794)
Q Consensus 433 --G~~~~~-------vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~~VI 494 (794)
|..... ...+|. ...+++|||||||.+.. ..+..|+..++.-. ...++.
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDISP----------MMQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCCH----------HHHHHHHHHHccCcEEeCCCCceeeeceE
Confidence 110000 001111 12356999999999954 34445555554311 112467
Q ss_pred EEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----CC-CCcccHHH---HHH--
Q 003807 495 LMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PL-ADDVDVKA---IAR-- 553 (794)
Q Consensus 495 VIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~~----~l-~~dvdl~~---IAr-- 553 (794)
+|++|+.+ +. ....+|+|.. .+.+..|..++|.+ ++++++... .. ...++.+. +..
T Consensus 277 ii~~t~~~--~~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (441)
T PRK10365 277 LIAATHRD--LA-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 (441)
T ss_pred EEEeCCCC--HH-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 88888743 22 3334456643 56777888887755 455555431 11 11233333 322
Q ss_pred ------HHHHHHHHHHHHHHHhCCCCCcHHHHHH
Q 003807 554 ------DLANLVNIAAIKAAVDGGEKLTATELEF 581 (794)
Q Consensus 554 ------DL~nlvn~Aal~Aa~~~~~~It~~dl~~ 581 (794)
+|.|++++|+..+ ....|+.+++..
T Consensus 354 wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~ 384 (441)
T PRK10365 354 WPGNIRELENAVERAVVLL---TGEYISERELPL 384 (441)
T ss_pred CCCHHHHHHHHHHHHHHhC---CCCccchHhCch
Confidence 7777777776543 345677777643
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.62 E-value=1.6e-07 Score=102.48 Aligned_cols=101 Identities=28% Similarity=0.378 Sum_probs=62.6
Q ss_pred CCcccccCCH-HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh
Q 003807 355 KTFKDVKGCD-DAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 430 (794)
Q Consensus 355 ~tFdDVvG~d-eaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~ 430 (794)
.+|+++...+ +.+..+.....++.+. .. .+..+|++|+||+|||||+||.|+|+++ |.++.++..++|...
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 4666665443 2222333334444322 11 2235799999999999999999999987 788888888777544
Q ss_pred hhhh-hhHHHHHHHHHHHhCCCeEEEEcCcccc
Q 003807 431 FVGV-GARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (794)
Q Consensus 431 ~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (794)
+... ....+.+.++..+ ...+|+||||..-
T Consensus 199 lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 3211 1112334444443 3469999999765
No 226
>PRK08181 transposase; Validated
Probab=98.61 E-value=2.5e-07 Score=99.34 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=63.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhh-hhHHHHHHHHHHHhCCCeEEEEcCccccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV-GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 467 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~ 467 (794)
.+++|+||||||||+||.+++.++ |..+++++..++...+... ........++... .+.+|+|||++.+....
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~~- 183 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKDQ- 183 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCCH-
Confidence 479999999999999999999755 7788888888876654221 1122333444433 45799999998875421
Q ss_pred ccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 468 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 468 ~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
.....+.++++... .+ + -+|.|||.+
T Consensus 184 ----~~~~~Lf~lin~R~---~~-~-s~IiTSN~~ 209 (269)
T PRK08181 184 ----AETSVLFELISARY---ER-R-SILITANQP 209 (269)
T ss_pred ----HHHHHHHHHHHHHH---hC-C-CEEEEcCCC
Confidence 12344555554332 22 2 245577765
No 227
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=3e-07 Score=101.17 Aligned_cols=133 Identities=18% Similarity=0.286 Sum_probs=94.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------------------EEEEeCcch---hh-hhhhhhhHH
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------------------------FFYRAGSEF---EE-MFVGVGARR 438 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-------------------------fi~is~se~---~e-~~vG~~~~~ 438 (794)
.++|..+||+||+|+|||++|+++|+.+.+. |++++...- .+ .....+.+.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 4789899999999999999999999987431 222322100 00 000123567
Q ss_pred HHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCc
Q 003807 439 VRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGR 514 (794)
Q Consensus 439 vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGR 514 (794)
+|++.+.+.. ....|++||++|.+. ....|.++..++... .++.+|.+|+.++.+.+.+.+ |
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld----------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN----------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC----------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 7887777653 334699999999983 467778888887653 345666788888999999887 5
Q ss_pred cceEEEccCCCHHHHHHHHHH
Q 003807 515 FDRHIVVPNPDVRGRQEILEL 535 (794)
Q Consensus 515 Fdr~I~V~lPd~~eR~eILk~ 535 (794)
+ ..+.|++|+.++..+.|+.
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 4 6789999999888877754
No 228
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.57 E-value=3.3e-07 Score=100.11 Aligned_cols=201 Identities=23% Similarity=0.374 Sum_probs=121.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e 429 (794)
....|+.+++.+...+.+.+-..-+.. ..-.+||.|..||||.++||+-.... ..||+.+||..+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~Am----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAM----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhc----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 345699999988876666543332222 12259999999999999999987654 68999999988744
Q ss_pred h-----hhhhh--hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhh-cccc--------CCcE
Q 003807 430 M-----FVGVG--ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD-GFEQ--------NEGI 493 (794)
Q Consensus 430 ~-----~vG~~--~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLD-g~~~--------~~~V 493 (794)
. ..|.. .+.-..+|+.|..+ .+|+|||..+.+ ..+..||..+. |--. .-.|
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp----------~lQaKLLRFL~DGtFRRVGee~Ev~vdV 335 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSP----------RLQAKLLRFLNDGTFRRVGEDHEVHVDV 335 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCH----------HHHHHHHHHhcCCceeecCCcceEEEEE
Confidence 2 12222 23445778888665 799999988854 44555666553 2111 1248
Q ss_pred EEEEEcCCC--CCCChhhcCCCccce--EEEccCCCHHHHHH----HHHHHh----ccCCCC-CcccH---HHHH-----
Q 003807 494 ILMAATNLP--DILDPALTRPGRFDR--HIVVPNPDVRGRQE----ILELYL----QDKPLA-DDVDV---KAIA----- 552 (794)
Q Consensus 494 IVIaATN~p--~~LD~ALlRpGRFdr--~I~V~lPd~~eR~e----ILk~~l----~~~~l~-~dvdl---~~IA----- 552 (794)
.||+||..+ +..++.-.|..-|.| ++.+..|..++|.. +.+.++ .+.... +..+. ..+-
T Consensus 336 RVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~Wp 415 (511)
T COG3283 336 RVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWP 415 (511)
T ss_pred EEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCC
Confidence 999999854 222333333333333 67778888888754 333333 333222 22222 2222
Q ss_pred ---HHHHHHHHHHHHHHHHhCCCCCcHHHH
Q 003807 553 ---RDLANLVNIAAIKAAVDGGEKLTATEL 579 (794)
Q Consensus 553 ---rDL~nlvn~Aal~Aa~~~~~~It~~dl 579 (794)
|+|.|++-+|.... ....++.+++
T Consensus 416 GNVRqL~N~iyRA~s~~---Eg~~l~i~~i 442 (511)
T COG3283 416 GNVRQLKNAIYRALTLL---EGYELRIEDI 442 (511)
T ss_pred ccHHHHHHHHHHHHHHh---ccCccchhhc
Confidence 27777777776543 2244555544
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.55 E-value=3.3e-07 Score=101.04 Aligned_cols=70 Identities=26% Similarity=0.501 Sum_probs=49.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhh---hhHHHHHHHHHHHhCCCeEEEEcCccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV---GARRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~---~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
.+++|+||||||||+||.|+|+++ |..+++++..++...+... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 589999999999999999999987 7788999988876644221 0111112233333 34699999997763
No 230
>PRK06526 transposase; Provisional
Probab=98.52 E-value=2.6e-07 Score=98.40 Aligned_cols=100 Identities=20% Similarity=0.339 Sum_probs=61.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhh-hhHHHHHHHHHHHhCCCeEEEEcCcccccccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV-GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 466 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 466 (794)
+.+++|+||||||||+||.+++.++ |..+.+++..++....... ........+... ..+.+|+|||++.+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~~ 175 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFEP 175 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCCH
Confidence 3589999999999999999998875 6777777777765543211 111222223322 345799999999874321
Q ss_pred cccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 467 KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 467 ~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
.....+.+++.... .+. .+|.|||.+
T Consensus 176 -----~~~~~L~~li~~r~---~~~--s~IitSn~~ 201 (254)
T PRK06526 176 -----EAANLFFQLVSSRY---ERA--SLIVTSNKP 201 (254)
T ss_pred -----HHHHHHHHHHHHHH---hcC--CEEEEcCCC
Confidence 12334455554322 122 255678865
No 231
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=7e-07 Score=84.74 Aligned_cols=69 Identities=30% Similarity=0.323 Sum_probs=48.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (794)
+.++|+||.|+|||++++.++.... -.++++++.+......... . +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 3689999999999999999998876 7788888877654221111 1 223333322225689999999988
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.48 E-value=3.6e-06 Score=97.95 Aligned_cols=205 Identities=17% Similarity=0.203 Sum_probs=115.7
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE-eC
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR-AG 424 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i-s~ 424 (794)
..|.....+.+.+||+-..+-.++++.++..... +....+-+||+||||||||++++.+|+++|..+..- +.
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 4677777888999999988776777666653211 223344688999999999999999999998766642 22
Q ss_pred cchh------hhhhhhh---------hHHHHHH-HHHHHh-----------CCCeEEEEcCcccccccccccccchHHHH
Q 003807 425 SEFE------EMFVGVG---------ARRVRSL-FQAAKK-----------KAPCIIFIDEIDAVGSTRKQWEGHTKKTL 477 (794)
Q Consensus 425 se~~------e~~vG~~---------~~~vr~l-F~~Ar~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~L 477 (794)
..+. ..|.+.. .....++ +..++. ..+.||+|||+-.+... .. ..+
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~-~~f 152 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DT-SRF 152 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hH-HHH
Confidence 2210 1111110 0112222 122121 24579999998866432 11 223
Q ss_pred HHHHH-hhhccccCC-cEEEEEE-cC------CC--------CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC
Q 003807 478 HQLLV-EMDGFEQNE-GIILMAA-TN------LP--------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 540 (794)
Q Consensus 478 nqLL~-eLDg~~~~~-~VIVIaA-TN------~p--------~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~ 540 (794)
..+|. .+.. ... .+|+|.+ ++ .. ..+++.++...+. .+|.|.+-...-....|+..+...
T Consensus 153 ~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 153 REALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 33332 2321 223 6666666 11 11 1355666553333 478887766655555555444322
Q ss_pred --------CCCCccc-HHHHHH----HHHHHHHHHHHHHH
Q 003807 541 --------PLADDVD-VKAIAR----DLANLVNIAAIKAA 567 (794)
Q Consensus 541 --------~l~~dvd-l~~IAr----DL~nlvn~Aal~Aa 567 (794)
......+ ++.|+. ||+..++.-...+.
T Consensus 230 ~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 230 ARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred hhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 1122223 667775 99999988877776
No 233
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.48 E-value=2.2e-06 Score=91.29 Aligned_cols=167 Identities=19% Similarity=0.271 Sum_probs=113.9
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-C--CCEE------
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-G--VPFF------ 420 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-g--~pfi------ 420 (794)
....+.+|+.+.+.++....|+.+.. ..+.| ++|+|||+|+||-|.+.++-+++ | ++=.
T Consensus 5 dkyrpksl~~l~~~~e~~~~Lksl~~-----------~~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 5 DKYRPKSLDELIYHEELANLLKSLSS-----------TGDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hhcCcchhhhcccHHHHHHHHHHhcc-----------cCCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 34455688889999888888866544 23345 89999999999999999998877 2 2111
Q ss_pred ------------EEeCcchhhh---hhhh-hhHHHHHHHHHHHhCC---------CeEEEEcCcccccccccccccchHH
Q 003807 421 ------------YRAGSEFEEM---FVGV-GARRVRSLFQAAKKKA---------PCIIFIDEIDAVGSTRKQWEGHTKK 475 (794)
Q Consensus 421 ------------~is~se~~e~---~vG~-~~~~vr~lF~~Ar~~a---------P~ILfIDEIDaL~~~r~~~~~~~~~ 475 (794)
+++.....+. -.|. ..--+.++.+...+.. -.+++|.|.|.+. +.
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT----------~d 142 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT----------RD 142 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh----------HH
Confidence 1111111110 0111 1123455555544332 2599999999994 46
Q ss_pred HHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC
Q 003807 476 TLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA 543 (794)
Q Consensus 476 ~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~ 543 (794)
.+..|-+.|+.+..+.+ +|..+|....+-+++++ |. ..|.+|.|+.++...++...+++..+.
T Consensus 143 AQ~aLRRTMEkYs~~~R--lIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 143 AQHALRRTMEKYSSNCR--LILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred HHHHHHHHHHHHhcCce--EEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 77788888987766654 45567888888888987 43 568999999999999999998876654
No 234
>PRK09183 transposase/IS protein; Provisional
Probab=98.45 E-value=6e-07 Score=95.78 Aligned_cols=72 Identities=29% Similarity=0.408 Sum_probs=50.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhh-hhhHHHHHHHHHHHhCCCeEEEEcCcccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVG-VGARRVRSLFQAAKKKAPCIIFIDEIDAVGS 464 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG-~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 464 (794)
.+++|+||||||||+||.+++.++ |..+.++++.++...+.. .....+...+... ...+.+++|||++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 479999999999999999997664 777888887777644321 1112234445443 24567999999987643
No 235
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.44 E-value=2.2e-06 Score=101.05 Aligned_cols=181 Identities=16% Similarity=0.161 Sum_probs=118.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCcchhhhhhhhhh--HHH--------HHHHHHHHhCCCeEEEEcCc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVGA--RRV--------RSLFQAAKKKAPCIIFIDEI 459 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~se~~e~~vG~~~--~~v--------r~lF~~Ar~~aP~ILfIDEI 459 (794)
.||+|.|++|||||+++++++.-+. .||..+..+.-.+..+|... ..+ ..++..|. ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 3899999999999999999999874 58887665544444444321 101 12222222 249999999
Q ss_pred ccccccccccccchHHHHHHHHHhhhcc-----------ccCCcEEEEEEcCCC---CCCChhhcCCCccceEEEccCCC
Q 003807 460 DAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLP---DILDPALTRPGRFDRHIVVPNPD 525 (794)
Q Consensus 460 DaL~~~r~~~~~~~~~~LnqLL~eLDg~-----------~~~~~VIVIaATN~p---~~LD~ALlRpGRFdr~I~V~lPd 525 (794)
..+. ..++..|+..|+.- .....+++|++-|.. ..|.++++. ||+.+|.++.|+
T Consensus 103 n~~~----------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~ 170 (584)
T PRK13406 103 ERLE----------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLA 170 (584)
T ss_pred ccCC----------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCC
Confidence 8883 47888888887642 123467888874422 348888987 999999999887
Q ss_pred HHHHH-------HHHH--HHhccCCCCCcccHHHHHH-----------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 003807 526 VRGRQ-------EILE--LYLQDKPLADDVDVKAIAR-----------DLANLVNIAAIKAAVDGGEKLTATELEFAKDR 585 (794)
Q Consensus 526 ~~eR~-------eILk--~~l~~~~l~~dvdl~~IAr-----------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~r 585 (794)
..+.. .|.+ ..+.+..+ ++..+..++. --..+++-|...|..+++..|+.+|+.+|..-
T Consensus 171 ~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 171 LRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred hHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 65422 2322 22222222 1222233322 22346677788899999999999999999987
Q ss_pred Hhc
Q 003807 586 ILM 588 (794)
Q Consensus 586 i~~ 588 (794)
++.
T Consensus 250 vL~ 252 (584)
T PRK13406 250 VLA 252 (584)
T ss_pred HHH
Confidence 763
No 236
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.43 E-value=6e-06 Score=88.70 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=57.4
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCccc-HHHHHH--------HHHHHHHHHHHHHHHhCCC
Q 003807 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-VKAIAR--------DLANLVNIAAIKAAVDGGE 572 (794)
Q Consensus 502 p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvd-l~~IAr--------DL~nlvn~Aal~Aa~~~~~ 572 (794)
|.-++-.|+. |. ..|...+++.++..+||+..+....+.-+.| ++.+.+ ...+++..|.+.+.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 3455555554 33 3667778899999999999987654432222 222222 4457888899999999999
Q ss_pred CCcHHHHHHHHHHH
Q 003807 573 KLTATELEFAKDRI 586 (794)
Q Consensus 573 ~It~~dl~~Ai~ri 586 (794)
.+..+|++.+..-.
T Consensus 416 ~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 416 VVEVDDIERVYRLF 429 (454)
T ss_pred eeehhHHHHHHHHH
Confidence 99999999987644
No 237
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-06 Score=105.33 Aligned_cols=127 Identities=26% Similarity=0.343 Sum_probs=92.3
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh---
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGG-KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 430 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~-~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~--- 430 (794)
+.|+|++++...+.+.|...+..- +. +++-.+||.||.|+|||-||+|+|... .-.|+.+++++|.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl-----~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGL-----KDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhccc-----CCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 358999999999988887544311 11 355678999999999999999999977 357899999986542
Q ss_pred ------hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc---------CCcEEE
Q 003807 431 ------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGIIL 495 (794)
Q Consensus 431 ------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~---------~~~VIV 495 (794)
|+| ......+.+..++...+||+|||||.-- ...++.|+..+|...- -.++||
T Consensus 637 igsp~gyvG--~e~gg~LteavrrrP~sVVLfdeIEkAh----------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 637 IGSPPGYVG--KEEGGQLTEAVKRRPYSVVLFEEIEKAH----------PDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred cCCCccccc--chhHHHHHHHHhcCCceEEEEechhhcC----------HHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 333 2334466667777777899999999862 4677777777665432 125899
Q ss_pred EEEcCC
Q 003807 496 MAATNL 501 (794)
Q Consensus 496 IaATN~ 501 (794)
|.|+|.
T Consensus 705 IMTsn~ 710 (898)
T KOG1051|consen 705 IMTSNV 710 (898)
T ss_pred EEeccc
Confidence 999884
No 238
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.40 E-value=4.3e-07 Score=105.47 Aligned_cols=172 Identities=27% Similarity=0.417 Sum_probs=107.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc--CCCEEEEeCcchhhh-----hhhh--------hhHHHHHHHHHHHhCCCeEEEEc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA--GVPFFYRAGSEFEEM-----FVGV--------GARRVRSLFQAAKKKAPCIIFID 457 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea--g~pfi~is~se~~e~-----~vG~--------~~~~vr~lF~~Ar~~aP~ILfID 457 (794)
.+|+.|.|||||-.+||++.... ..||+.++|..+.+. ++|- ..+-.+..+++|.. ..+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHHH
Confidence 59999999999999999997755 579999999876433 2222 12223333333333 389999
Q ss_pred CcccccccccccccchHHHHHHHHHhhh--------ccccCCcEEEEEEcCCCCCCChhhcCCCccce-------EEEcc
Q 003807 458 EIDAVGSTRKQWEGHTKKTLHQLLVEMD--------GFEQNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVP 522 (794)
Q Consensus 458 EIDaL~~~r~~~~~~~~~~LnqLL~eLD--------g~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~ 522 (794)
||..+.- ..+..||..+. +-...-.|-||+||+++ |. .|.+-|||-+ .+.|.
T Consensus 415 eIgd~p~----------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d--l~-~lv~~g~fredLyyrL~~~~i~ 481 (606)
T COG3284 415 EIGDMPL----------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD--LA-QLVEQGRFREDLYYRLNAFVIT 481 (606)
T ss_pred HhhhchH----------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC--HH-HHHHcCCchHHHHHHhcCeeec
Confidence 9988832 33444554433 22333458899999953 32 5667788865 45667
Q ss_pred CCCHHHHHH---HHHHHhccCC-CCCcccHHHHHH-----------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 523 NPDVRGRQE---ILELYLQDKP-LADDVDVKAIAR-----------DLANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 523 lPd~~eR~e---ILk~~l~~~~-l~~dvdl~~IAr-----------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+|..++|.+ .|.+++.+.. ..-.++-+.+++ +|.|++..+++.+ +...|...|+...+
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred cCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 788887765 4444443332 223445455544 7778887776654 44555555555444
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.38 E-value=1.9e-06 Score=91.75 Aligned_cols=71 Identities=27% Similarity=0.439 Sum_probs=49.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhhhhH-HHH-HHHHHHHhCCCeEEEEcCccccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGAR-RVR-SLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~~~~-~vr-~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
+.+++|+||||||||+||-||++++ |.++++++..++....-..-.. ... .+....+ ...+|+|||+....
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~~ 180 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYEP 180 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCcc
Confidence 4589999999999999999999977 7889999988886543221111 111 1112122 34699999998763
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.38 E-value=1.1e-06 Score=82.20 Aligned_cols=98 Identities=22% Similarity=0.341 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEeCcchhh--hh-------h-----h-hhhH-HHHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAGSEFEE--MF-------V-----G-VGAR-RVRSLFQAAK 447 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea--------g~pfi~is~se~~e--~~-------v-----G-~~~~-~vr~lF~~Ar 447 (794)
+.++++||||+|||++++.++... ..+++.+++..... .+ . . .... ....+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 468999999999999999999987 67888887654421 00 0 1 1122 2233334444
Q ss_pred hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 448 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 448 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
.....+|+|||+|.+. + ...++.|...++ ..+-.++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~-~--------~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-S--------DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-T--------HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-C--------HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 4444599999999984 1 456666665555 3444566666543
No 241
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.37 E-value=4.1e-06 Score=90.12 Aligned_cols=202 Identities=20% Similarity=0.279 Sum_probs=100.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC-C--EEEEeCcchhhhhhhhhhHHHHHHHHHH-----------HhCCCeEEEEc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGV-P--FFYRAGSEFEEMFVGVGARRVRSLFQAA-----------KKKAPCIIFID 457 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~-p--fi~is~se~~e~~vG~~~~~vr~lF~~A-----------r~~aP~ILfID 457 (794)
+++||+||+|||||++++..-.+..- . ...++++.... ...+..+.+.. ..+..+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 47999999999999999988776532 2 22344433211 12222222111 11234699999
Q ss_pred CcccccccccccccchHHHHHHHHHhh---hcccc--------CCcEEEEEEcCCCC---CCChhhcCCCccceEEEccC
Q 003807 458 EIDAVGSTRKQWEGHTKKTLHQLLVEM---DGFEQ--------NEGIILMAATNLPD---ILDPALTRPGRFDRHIVVPN 523 (794)
Q Consensus 458 EIDaL~~~r~~~~~~~~~~LnqLL~eL---Dg~~~--------~~~VIVIaATN~p~---~LD~ALlRpGRFdr~I~V~l 523 (794)
|+..-.... +..+....||+++ .|+-. -.++.+|||+|.+. .+++.++| .| .++.++.
T Consensus 108 DlN~p~~d~-----ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~ 179 (272)
T PF12775_consen 108 DLNMPQPDK-----YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPY 179 (272)
T ss_dssp TTT-S---T-----TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE---
T ss_pred ccCCCCCCC-----CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecC
Confidence 997653321 1222223444332 22221 13577889888543 36777777 55 5889999
Q ss_pred CCHHHHHHHHHHHhcc----CCCCCccc--HHHHHHHHHHHHHHHHHH---HHHhCCCCCcHHHHHHHHHHHhccccccc
Q 003807 524 PDVRGRQEILELYLQD----KPLADDVD--VKAIARDLANLVNIAAIK---AAVDGGEKLTATELEFAKDRILMGTERKT 594 (794)
Q Consensus 524 Pd~~eR~eILk~~l~~----~~l~~dvd--l~~IArDL~nlvn~Aal~---Aa~~~~~~It~~dl~~Ai~ri~~g~~~k~ 594 (794)
|+.+....|+..++.. .....++. ...+......+.+..... .-.+-.=.-++.|+...+.-++.....
T Consensus 180 p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~~~~~-- 257 (272)
T PF12775_consen 180 PSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILLASPE-- 257 (272)
T ss_dssp -TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHHHHCT--
T ss_pred CChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHhcChh--
Confidence 9999998877666543 22222221 333333112222221110 000112245778888877776543222
Q ss_pred cccchhhhHHHHHHH
Q 003807 595 MFISEESKKLTAYHE 609 (794)
Q Consensus 595 ~~ls~eek~~~A~HE 609 (794)
..-+.+.-.+.=+||
T Consensus 258 ~~~~~~~l~rLW~HE 272 (272)
T PF12775_consen 258 SIKTKESLLRLWVHE 272 (272)
T ss_dssp SSS-SHHHHHHHHHH
T ss_pred hcCCHHHheEeecCC
Confidence 122344555666776
No 242
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.37 E-value=4.7e-07 Score=91.41 Aligned_cols=70 Identities=29% Similarity=0.463 Sum_probs=48.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhh-hhHHHHHHHHHHHhCCCeEEEEcCcccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV-GARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (794)
..|++|+||||||||+||.+++.++ |.++.+++..++....... ........++.... +.+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee
Confidence 4689999999999999999999876 8889999988886653221 11223344444443 469999998654
No 243
>PRK06921 hypothetical protein; Provisional
Probab=98.35 E-value=2.5e-06 Score=91.50 Aligned_cols=68 Identities=31% Similarity=0.359 Sum_probs=46.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 461 (794)
..+++|+||||||||+|+.|||+++ |..+++++..++...+... .......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4589999999999999999999976 6678888876654432111 11122222222 2357999999954
No 244
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=1.4e-05 Score=90.28 Aligned_cols=179 Identities=23% Similarity=0.263 Sum_probs=112.0
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----CC-CEEEEeCcchhhh--
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----GV-PFFYRAGSEFEEM-- 430 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~-pfi~is~se~~e~-- 430 (794)
..+.|.+..+..+++++..- +....+..+.+.|-||||||.+..-+-... .. ..++++|..+.+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 45688888888887776632 223445679999999999999888765543 22 3478888764221
Q ss_pred --------h----hhhhh-HHHHHHHHH-HHhC-CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEE
Q 003807 431 --------F----VGVGA-RRVRSLFQA-AKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 495 (794)
Q Consensus 431 --------~----vG~~~-~~vr~lF~~-Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIV 495 (794)
+ .+.+. ......|.. .... .+-++++||+|.|+.+. +.++..+. ++.. .++.++++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-------~~vLy~lF-ewp~-lp~sr~iL 292 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-------QTVLYTLF-EWPK-LPNSRIIL 292 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-------cceeeeeh-hccc-CCcceeee
Confidence 1 11111 112223322 2222 36799999999998532 23333333 2232 24678999
Q ss_pred EEEcCCCCCCChhhcC----CCccceEEEccCCCHHHHHHHHHHHhccCCCCCcc--cHHHHHH
Q 003807 496 MAATNLPDILDPALTR----PGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV--DVKAIAR 553 (794)
Q Consensus 496 IaATN~p~~LD~ALlR----pGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dv--dl~~IAr 553 (794)
||.+|..+.-|..|-| .+.-...+.|++++.++..+||+..+......... .++.+|+
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~Ar 356 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCAR 356 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 9999987765654432 12234589999999999999999999876544333 2444454
No 245
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=5.8e-06 Score=89.63 Aligned_cols=123 Identities=18% Similarity=0.198 Sum_probs=85.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC--------cchhhhh-hh----hhhHHHHHHHHHHHh----C
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG--------SEFEEMF-VG----VGARRVRSLFQAAKK----K 449 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~--------se~~e~~-vG----~~~~~vr~lF~~Ar~----~ 449 (794)
.+++|..+||+||+|+||+.+|.++|..+-+.--.-+| .++...+ .+ -+.+.+|++.+.+.. +
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 46788999999999999999999999987542100011 1110000 01 134556666655543 3
Q ss_pred CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCC
Q 003807 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 524 (794)
Q Consensus 450 aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lP 524 (794)
...|++||++|.+. ....|.||+.|+. +..++++|..|+.++.|.|.+++ |+ ..+.|+++
T Consensus 95 ~~kv~ii~~ad~mt----------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRMT----------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CceEEEEechhhcC----------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 34699999999994 4788999999995 56678888888889999999987 65 55667654
No 246
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.31 E-value=3.3e-06 Score=85.63 Aligned_cols=160 Identities=25% Similarity=0.334 Sum_probs=82.5
Q ss_pred cCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---CEEEEeC-cchhh----hh-
Q 003807 361 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAG-SEFEE----MF- 431 (794)
Q Consensus 361 vG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~---pfi~is~-se~~e----~~- 431 (794)
+|.++..+.|.+++. . .....++|+||.|+|||+|++.+.....- ..+++.. ..... .+
T Consensus 2 ~gR~~el~~l~~~l~---~---------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLE---S---------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHH---H-----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---h---------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 466665555555443 1 12347999999999999999999998832 2222221 11100 00
Q ss_pred ------------h-----------------hhhhHHHHHHHHHHHhCC-CeEEEEcCccccc-ccccccccchHHHHHHH
Q 003807 432 ------------V-----------------GVGARRVRSLFQAAKKKA-PCIIFIDEIDAVG-STRKQWEGHTKKTLHQL 480 (794)
Q Consensus 432 ------------v-----------------G~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~-~~r~~~~~~~~~~LnqL 480 (794)
. ......+..+++...... ..||+|||+|.+. ... .....+..|
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-----~~~~~~~~l 144 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-----EDKDFLKSL 144 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-----TTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-----chHHHHHHH
Confidence 0 112344556666665533 4899999999997 211 224555566
Q ss_pred HHhhhccccCCcE-EEEEEcCCC---C--CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC
Q 003807 481 LVEMDGFEQNEGI-ILMAATNLP---D--ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 540 (794)
Q Consensus 481 L~eLDg~~~~~~V-IVIaATN~p---~--~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~ 540 (794)
...++......++ +|+++++.. + .-...+. +|+.. +.+++-+.++..++++..+...
T Consensus 145 ~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 145 RSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp HHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC
T ss_pred HHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh
Confidence 6666653334444 334444310 1 1111222 47766 9999999999999999877654
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.30 E-value=2.3e-06 Score=81.62 Aligned_cols=71 Identities=27% Similarity=0.288 Sum_probs=47.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh----------------------hh--hhHHHHHHHHHH
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV----------------------GV--GARRVRSLFQAA 446 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v----------------------G~--~~~~vr~lF~~A 446 (794)
++|+||||+|||+++..++..+ +.++++++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 56777776643321100 00 011112234555
Q ss_pred HhCCCeEEEEcCcccccc
Q 003807 447 KKKAPCIIFIDEIDAVGS 464 (794)
Q Consensus 447 r~~aP~ILfIDEIDaL~~ 464 (794)
....|.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667789999999998854
No 248
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.30 E-value=1.2e-05 Score=102.20 Aligned_cols=175 Identities=18% Similarity=0.227 Sum_probs=100.0
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE---EEEeCcch---h
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF---FYRAGSEF---E 428 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pf---i~is~se~---~ 428 (794)
..|++++|.++..+++...+.. +....+-+-|+||+|+||||||+++++.....| +.++.... .
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 3588999999998888776641 122345688999999999999999988774433 11111000 0
Q ss_pred hhh-----------hhhhhHHHHH-------------HHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhh
Q 003807 429 EMF-----------VGVGARRVRS-------------LFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 484 (794)
Q Consensus 429 e~~-----------vG~~~~~vr~-------------lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eL 484 (794)
..+ .......+.+ ..+..-...+.+|+||++|.. ..+..+....
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~------------~~l~~L~~~~ 318 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ------------DVLDALAGQT 318 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH------------HHHHHHHhhC
Confidence 000 0000000111 111222345679999998643 3344444333
Q ss_pred hccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHH
Q 003807 485 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARDLANLV 559 (794)
Q Consensus 485 Dg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IArDL~nlv 559 (794)
+.+.. +-.||.||.. ..+.+....++.+.++.|+.++..+++..++-+... +..++..+++++...+
T Consensus 319 ~~~~~--GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 319 QWFGS--GSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRA 385 (1153)
T ss_pred ccCCC--CcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHh
Confidence 33322 3334446663 333333346788999999999999999888754322 2334666666555443
No 249
>PF05729 NACHT: NACHT domain
Probab=98.25 E-value=9.6e-06 Score=78.11 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=74.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC--------CC-EEEEeCcchhhh------------hhhhhhHHHHH-HHHHHHhCC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG--------VP-FFYRAGSEFEEM------------FVGVGARRVRS-LFQAAKKKA 450 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag--------~p-fi~is~se~~e~------------~vG~~~~~vr~-lF~~Ar~~a 450 (794)
-++|+|+||+|||++++.++..+. .+ ++++++.+.... ........+.. +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987651 12 223333332211 01111111222 122233456
Q ss_pred CeEEEEcCcccccccccc-cccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHH
Q 003807 451 PCIIFIDEIDAVGSTRKQ-WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGR 529 (794)
Q Consensus 451 P~ILfIDEIDaL~~~r~~-~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR 529 (794)
..+|+||.+|.+...... ........+.+++.. ...++..++|.+.+.....+...+.. ...+.++.-+..++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFSEEDI 155 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCCHHHH
Confidence 679999999999653221 000112223333322 12233344433322222122222222 15688999999999
Q ss_pred HHHHHHHhcc
Q 003807 530 QEILELYLQD 539 (794)
Q Consensus 530 ~eILk~~l~~ 539 (794)
.++++.++++
T Consensus 156 ~~~~~~~f~~ 165 (166)
T PF05729_consen 156 KQYLRKYFSN 165 (166)
T ss_pred HHHHHHHhhc
Confidence 9999998764
No 250
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.25 E-value=9.8e-07 Score=97.37 Aligned_cols=161 Identities=26% Similarity=0.302 Sum_probs=78.7
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhh--cCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh--hhhh--
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTR--LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE--EMFV-- 432 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~--lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~--e~~v-- 432 (794)
+|.|.+.+|..+. +..+....+... ...+-.-++||+|.||||||.|.+.++.-+.... ++++.... +...
T Consensus 25 ~i~g~~~iK~ail--l~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAIL--LQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHC--CCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHH--HHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 5789888877661 111111111000 0122345799999999999999998876554333 33332210 0000
Q ss_pred ----hhhhHHH-HHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc-----------cCCcEEEE
Q 003807 433 ----GVGARRV-RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILM 496 (794)
Q Consensus 433 ----G~~~~~v-r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~-----------~~~~VIVI 496 (794)
..+.-.+ ...+-.|. ..|.+|||+|.+.. .....|+..|+.-. -+.+.-|+
T Consensus 102 ~~d~~~~~~~leaGalvlad---~GiccIDe~dk~~~----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLAD---GGICCIDEFDKMKE----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCT---TSEEEECTTTT--C----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred ccccccceeEEeCCchhccc---Cceeeecccccccc----------hHHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 0000000 01222232 35999999999843 34556666665411 12346788
Q ss_pred EEcCCCC-------------CCChhhcCCCccceEEEc-cCCCHHHHHHHHHHHh
Q 003807 497 AATNLPD-------------ILDPALTRPGRFDRHIVV-PNPDVRGRQEILELYL 537 (794)
Q Consensus 497 aATN~p~-------------~LD~ALlRpGRFdr~I~V-~lPd~~eR~eILk~~l 537 (794)
|++|... .+++.|++ |||..+.+ +.|+.+.-..|.++.+
T Consensus 169 aa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il 221 (331)
T PF00493_consen 169 AAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHIL 221 (331)
T ss_dssp EEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEE
Confidence 9999664 47788888 99998776 6677555555555444
No 251
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.25 E-value=4.6e-06 Score=99.07 Aligned_cols=160 Identities=28% Similarity=0.309 Sum_probs=91.6
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCC--CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE-eCcchhhhhhh
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG--KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR-AGSEFEEMFVG 433 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~--~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i-s~se~~e~~vG 433 (794)
.-.|.|++++|+.+ ++..+....+...-|. +---+|||.|.||||||.|.+.+++-+...++.- .++. -+|
T Consensus 285 aPsIyG~e~VKkAi--lLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAI--LLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAG 358 (682)
T ss_pred cccccCcHHHHHHH--HHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccC
Confidence 45678988888777 3333333333222222 1225799999999999999999999876554431 1111 122
Q ss_pred hhhHHHHHHH--H---HHH---hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc-----------cCCcEE
Q 003807 434 VGARRVRSLF--Q---AAK---KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGII 494 (794)
Q Consensus 434 ~~~~~vr~lF--~---~Ar---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~-----------~~~~VI 494 (794)
.++..+++-+ + .+- -..+.|.+|||+|.+.. ...+.+...|+... -+.+.-
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~----------~dr~aihEaMEQQtIsIaKAGI~atLnARcs 428 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE----------EDRVAIHEAMEQQTISIAKAGITATLNARCS 428 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh----------HHHHHHHHHHHhcEeeecccceeeecchhhh
Confidence 2332222222 0 111 02356999999999833 23334444444210 122344
Q ss_pred EEEEcCCCC-------------CCChhhcCCCccceEEEc-cCCCHHHHHHHHH
Q 003807 495 LMAATNLPD-------------ILDPALTRPGRFDRHIVV-PNPDVRGRQEILE 534 (794)
Q Consensus 495 VIaATN~p~-------------~LD~ALlRpGRFdr~I~V-~lPd~~eR~eILk 534 (794)
|+||+|... .|++.|++ |||..+.+ +.|+.+.=..|.+
T Consensus 429 vLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 429 VLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred hhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHH
Confidence 678888664 47888998 99997765 4566653333333
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.13 E-value=3.1e-05 Score=90.63 Aligned_cols=129 Identities=29% Similarity=0.396 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHH-----HHHHHHHHHh---CCCeEEEEcCccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR-----VRSLFQAAKK---KAPCIIFIDEIDAVG 463 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~-----vr~lF~~Ar~---~aP~ILfIDEIDaL~ 463 (794)
-+|||+|.||||||.+.+.+++-+..-.+. |+.. ..-+|.++-- -+++.-+... ....|-.|||+|.+.
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 579999999999999999999977543332 2211 1111211110 1111111100 123477999999994
Q ss_pred ccccccccchHHHHHHHHHh------hhcc--ccCCcEEEEEEcCCCC-------------CCChhhcCCCccceEE-Ec
Q 003807 464 STRKQWEGHTKKTLHQLLVE------MDGF--EQNEGIILMAATNLPD-------------ILDPALTRPGRFDRHI-VV 521 (794)
Q Consensus 464 ~~r~~~~~~~~~~LnqLL~e------LDg~--~~~~~VIVIaATN~p~-------------~LD~ALlRpGRFdr~I-~V 521 (794)
.+ .+..|.+.++. ..|+ .-+.+--|||++|..+ .|+|.|++ |||.++ -+
T Consensus 540 dS-------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylll 610 (804)
T KOG0478|consen 540 DS-------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLL 610 (804)
T ss_pred HH-------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEe
Confidence 31 22333332221 1111 1133445788888442 47899999 999966 45
Q ss_pred cCCCHHHHHHH
Q 003807 522 PNPDVRGRQEI 532 (794)
Q Consensus 522 ~lPd~~eR~eI 532 (794)
+.||...=+.|
T Consensus 611 D~~DE~~Dr~L 621 (804)
T KOG0478|consen 611 DKPDERSDRRL 621 (804)
T ss_pred cCcchhHHHHH
Confidence 77887633333
No 253
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=3.7e-05 Score=83.59 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=87.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------EEE-eC--------cchhhhh-hh--hhhHHHHHHHHHHH
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------FYR-AG--------SEFEEMF-VG--VGARRVRSLFQAAK 447 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~pf-------i~i-s~--------se~~e~~-vG--~~~~~vr~lF~~Ar 447 (794)
.+++|..+||+|| +||+++|+++|..+-+.- -.+ +| .++.... .| .+.+.+|++.+.+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 4678889999996 689999999998764321 000 00 1110000 01 13456777766654
Q ss_pred h----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccC
Q 003807 448 K----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 523 (794)
Q Consensus 448 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~l 523 (794)
. +...|++||++|.+. ....|.||+.++. +..++++|..|+.++.|-|.+++ |+ .++.|+.
T Consensus 98 ~~p~~~~~kV~II~~ad~m~----------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~ 162 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKMH----------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK 162 (290)
T ss_pred hCcccCCcEEEEeehhhhcC----------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC
Confidence 3 234699999999994 4788999999995 55667888888889999999988 65 6778865
Q ss_pred CCHHHHHHHHH
Q 003807 524 PDVRGRQEILE 534 (794)
Q Consensus 524 Pd~~eR~eILk 534 (794)
+.+...+++.
T Consensus 163 -~~~~~~~~L~ 172 (290)
T PRK07276 163 -NEAYLIQLLE 172 (290)
T ss_pred -cHHHHHHHHH
Confidence 5555555554
No 254
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.07 E-value=3.1e-05 Score=89.99 Aligned_cols=166 Identities=20% Similarity=0.232 Sum_probs=96.8
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCC--CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhh
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGK--LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 433 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~--~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG 433 (794)
=|-.|.|++.+|.-+ ++..+-.-.++..-|.+ -.-+|+|+|.|||||+-+.+++++-+...++. ++..-. -.|
T Consensus 343 l~PsIyGhe~VK~Gi--lL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaSS--aAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGI--LLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKASS--AAG 417 (764)
T ss_pred hCccccchHHHHhhH--HHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcccc--ccc
Confidence 378899999999877 34434333444332322 23579999999999999999999877655443 221110 011
Q ss_pred hhhHHHHH--HHH---HHHh---CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc-----------ccCCcEE
Q 003807 434 VGARRVRS--LFQ---AAKK---KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGII 494 (794)
Q Consensus 434 ~~~~~vr~--lF~---~Ar~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~-----------~~~~~VI 494 (794)
.++.-+++ -++ +|-. ....|-.|||+|.+..+ -...+.+.|+.- .-+.+.-
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~----------dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK----------DQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH----------hHHHHHHHHHhheehheecceEEeecchhh
Confidence 11111110 000 1110 12348899999999542 223344444421 0122345
Q ss_pred EEEEcCCCC-------------CCChhhcCCCccceEE-EccCCCHHHHHHHHHHHhc
Q 003807 495 LMAATNLPD-------------ILDPALTRPGRFDRHI-VVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 495 VIaATN~p~-------------~LD~ALlRpGRFdr~I-~V~lPd~~eR~eILk~~l~ 538 (794)
||||+|... .+++++++ |||..+ -++.|+...=..|-++.+.
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHH
Confidence 788888553 46889998 999854 5588888777666666554
No 255
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.06 E-value=0.00015 Score=76.50 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=87.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 471 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~ 471 (794)
.+..++||+|||||..+|.+|..+|.+++..+|++-.+ ...+..+|.-+... .+.+.+||++.+....- .
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~vL---S 102 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEVL---S 102 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHHH---H
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHHH---H
Confidence 36789999999999999999999999999999988654 34566676655543 37999999999843110 0
Q ss_pred chHHHHHHHHHhhhcc-----------ccCCcEEEEEEcCC----CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHH
Q 003807 472 HTKKTLHQLLVEMDGF-----------EQNEGIILMAATNL----PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY 536 (794)
Q Consensus 472 ~~~~~LnqLL~eLDg~-----------~~~~~VIVIaATN~----p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~ 536 (794)
...+.+..+...+..- .-+...-++.|.|. -..|++.|+. +-|.|.+..||.....+++-.-
T Consensus 103 ~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ei~L~s 179 (231)
T PF12774_consen 103 VISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAEILLLS 179 (231)
T ss_dssp HHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHHHHHHH
Confidence 0011122222221110 01112333445552 2468888875 4488999999987776665332
Q ss_pred hccCCCCCcccHHHHHHHHHHHHHHHH
Q 003807 537 LQDKPLADDVDVKAIARDLANLVNIAA 563 (794)
Q Consensus 537 l~~~~l~~dvdl~~IArDL~nlvn~Aa 563 (794)
.. -.+...+|+.+..+.+.+.
T Consensus 180 ---~G---F~~a~~La~kl~~l~~l~~ 200 (231)
T PF12774_consen 180 ---QG---FKDAKSLAKKLVSLFQLCK 200 (231)
T ss_dssp ---CC---TSSHHHHHHHHHHHHHHHH
T ss_pred ---cC---chhHHHHHHHHHHHHHHHH
Confidence 21 2467788887777766554
No 256
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=9.7e-05 Score=80.71 Aligned_cols=126 Identities=14% Similarity=0.148 Sum_probs=90.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------C--EEEEe--CcchhhhhhhhhhHHHHHHHHHHHh----
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----------P--FFYRA--GSEFEEMFVGVGARRVRSLFQAAKK---- 448 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~eag~-----------p--fi~is--~se~~e~~vG~~~~~vr~lF~~Ar~---- 448 (794)
++.+...||+|+.|+||+.+|++++..+.+ | ++.++ +.. .+...++++.+....
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~ 87 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFV 87 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcc
Confidence 567778999999999999999999998733 1 22222 111 123456666555422
Q ss_pred -CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHH
Q 003807 449 -KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 527 (794)
Q Consensus 449 -~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~ 527 (794)
+...|++||++|.+. ....|.||..|+. +...+++|..|+.++.|-+.+++ |. .++.|.+|+..
T Consensus 88 ~~~~KvvII~~~e~m~----------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~ 152 (299)
T PRK07132 88 QSQKKILIIKNIEKTS----------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQ 152 (299)
T ss_pred cCCceEEEEecccccC----------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHH
Confidence 245699999998883 4678899999986 44556666677788888888887 54 67999999988
Q ss_pred HHHHHHHH
Q 003807 528 GRQEILEL 535 (794)
Q Consensus 528 eR~eILk~ 535 (794)
+..+.|..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 88777654
No 257
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.02 E-value=0.00017 Score=82.95 Aligned_cols=207 Identities=15% Similarity=0.196 Sum_probs=109.6
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhc--CchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLK--NPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk--~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
+.|+.+..+.+.+++.-...-..++++.+..+. .+. +| .+-+||+||+|||||+.++-++.++|..++.-+
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~----l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK----LG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC----CC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 456667777789998876555455544443111 111 11 235889999999999999999999998776533
Q ss_pred C-------------cchhhhhhhhhhHHHHHHHHHHH------------hCCCeEEEEcCcccccccccccccchHHHHH
Q 003807 424 G-------------SEFEEMFVGVGARRVRSLFQAAK------------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLH 478 (794)
Q Consensus 424 ~-------------se~~e~~vG~~~~~vr~lF~~Ar------------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~Ln 478 (794)
. +.+.......--.....+...+. ...+.+|+|||+-..... +....+.
T Consensus 143 Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~------d~~~~f~ 216 (634)
T KOG1970|consen 143 NPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR------DDSETFR 216 (634)
T ss_pred CCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh------hhHHHHH
Confidence 1 11111111111122222222331 134679999998766442 1234444
Q ss_pred HHHHhhhccccCCcEEEEEEcCCCCCCChhhcCC------CccceEEEccCCCHHHHHHHHHHHhccC--C-----CCCc
Q 003807 479 QLLVEMDGFEQNEGIILMAATNLPDILDPALTRP------GRFDRHIVVPNPDVRGRQEILELYLQDK--P-----LADD 545 (794)
Q Consensus 479 qLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRp------GRFdr~I~V~lPd~~eR~eILk~~l~~~--~-----l~~d 545 (794)
.+|.++-....-.-|++|.-++.++..++..+.+ .|. .+|.|.+-...--++.|+..+... + +...
T Consensus 217 evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~ 295 (634)
T KOG1970|consen 217 EVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDT 295 (634)
T ss_pred HHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchh
Confidence 4444433322222344444444445544433322 122 256776655555555555554322 1 1223
Q ss_pred ccHHHHHH----HHHHHHHHHHHHH
Q 003807 546 VDVKAIAR----DLANLVNIAAIKA 566 (794)
Q Consensus 546 vdl~~IAr----DL~nlvn~Aal~A 566 (794)
..++.|+. ||+..++...+.+
T Consensus 296 ~~v~~i~~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 296 AEVELICQGSGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHHHHhcCccHHHHHhHhhhhc
Confidence 33455554 8888888877765
No 258
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.02 E-value=2.7e-05 Score=79.51 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=63.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh-hhhhh----------------------hhhHHHHHHHH
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-EMFVG----------------------VGARRVRSLFQ 444 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~-e~~vG----------------------~~~~~vr~lF~ 444 (794)
..-++|+||||+|||+++..++.+. +.+.++++..++. +.+.. .....+..+..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3458899999999999999987643 6678888886521 11100 00112333444
Q ss_pred HHHhCCCeEEEEcCccccccccccccc-chHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 445 AAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 445 ~Ar~~aP~ILfIDEIDaL~~~r~~~~~-~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
.+.+..|++|+||-|..+......... ...+.+..++..|..+....++.+|.+..
T Consensus 92 ~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 455557899999999988532111111 11223333334444444455666666644
No 259
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.00 E-value=5e-05 Score=80.63 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=75.9
Q ss_pred HHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh--cCCC---EEEEeCcch------hhh---hhhh
Q 003807 369 ELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE--AGVP---FFYRAGSEF------EEM---FVGV 434 (794)
Q Consensus 369 eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~e--ag~p---fi~is~se~------~e~---~vG~ 434 (794)
+++++.+.|.... ...+-|.|+|++|+|||+||+.+++. .... .+.++.+.- ... ..+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 3455555554421 23457899999999999999999987 3322 122332211 110 0111
Q ss_pred ---------hhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 435 ---------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 435 ---------~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
........+...-...+++|++|+++... .+..+...+.... .+..||.||......
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~------------~~~~l~~~~~~~~--~~~kilvTTR~~~v~ 142 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE------------DLEELREPLPSFS--SGSKILVTTRDRSVA 142 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH------------HH-------HCHH--SS-EEEEEESCGGGG
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc------------ccccccccccccc--ccccccccccccccc
Confidence 11222333333334458999999987651 2223332222222 233445566643221
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP 541 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~ 541 (794)
. ... .-+..+.++..+.++-.++|..+.....
T Consensus 143 ~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 143 G-SLG---GTDKVIELEPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp T-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS
T ss_pred c-ccc---cccccccccccccccccccccccccccc
Confidence 1 111 1156899999999999999998875443
No 260
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.95 E-value=3.9e-05 Score=85.83 Aligned_cols=139 Identities=23% Similarity=0.281 Sum_probs=77.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-EEEEeCcchhhhhhhh------hhHHHHHHHHHHHhCCCeEEEEcCcc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-FFYRAGSEFEEMFVGV------GARRVRSLFQAAKKKAPCIIFIDEID 460 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~eag~p-fi~is~se~~e~~vG~------~~~~vr~lF~~Ar~~aP~ILfIDEID 460 (794)
...|+|++||||+|+|||+|.-.+...+... =..+.-.+|....... ...-+..+-+...+ ...+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 4578999999999999999999998877541 1111111221110000 01112222222222 22499999987
Q ss_pred cccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC-CCCCh-hhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 461 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DILDP-ALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 461 aL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p-~~LD~-ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
---. .+...+..|+..+= ..|+++|+|+|++ +.|-+ .|.| .+| . | -.++|+.++.
T Consensus 138 V~Di-------aDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r-~~F-----l--p----~I~~l~~~~~ 194 (362)
T PF03969_consen 138 VTDI-------ADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQR-ERF-----L--P----FIDLLKRRCD 194 (362)
T ss_pred ccch-------hHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccH-HHH-----H--H----HHHHHHhceE
Confidence 5411 23456667776653 4688999999965 33322 2222 233 1 1 2456677776
Q ss_pred cCCCCCcccHHH
Q 003807 539 DKPLADDVDVKA 550 (794)
Q Consensus 539 ~~~l~~dvdl~~ 550 (794)
-..++..+|...
T Consensus 195 vv~ld~~~DyR~ 206 (362)
T PF03969_consen 195 VVELDGGVDYRR 206 (362)
T ss_pred EEEecCCCchhh
Confidence 666666666643
No 261
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.92 E-value=7.6e-05 Score=74.18 Aligned_cols=71 Identities=28% Similarity=0.358 Sum_probs=46.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh------hh-----------------------hh-----
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV-----------------------GA----- 436 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v------G~-----------------------~~----- 436 (794)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |. +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 67777777543221100 00 00
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCcccccc
Q 003807 437 RRVRSLFQAAKKKAPCIIFIDEIDAVGS 464 (794)
Q Consensus 437 ~~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 464 (794)
.....+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 0123344444556789999999998754
No 262
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=8.4e-05 Score=79.48 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=83.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc--------------chhhhhh---hhhhHHHHHHHHHHHh---
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS--------------EFEEMFV---GVGARRVRSLFQAAKK--- 448 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~s--------------e~~e~~v---G~~~~~vr~lF~~Ar~--- 448 (794)
.+|..+||+||+|+||..+|.++|..+-+.--.-.|. ++.-.+. .-+.+.+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4677899999999999999999998764321000111 1100000 1234556666554322
Q ss_pred --CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCC
Q 003807 449 --KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 524 (794)
Q Consensus 449 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lP 524 (794)
+...|++||++|.+. ....|.||..++. +..++++|..|+.++.+-+.+++ |. ..+.++.+
T Consensus 85 e~~~~KV~II~~ae~m~----------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN----------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC----------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--he-eeeecCCh
Confidence 234799999999994 4788999999995 66778888899999999999998 65 44666666
No 263
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.81 E-value=9.3e-05 Score=85.03 Aligned_cols=75 Identities=24% Similarity=0.444 Sum_probs=54.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh------hh--------hhHHHHHHHHHHHhCCCe
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKAPC 452 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v------G~--------~~~~vr~lF~~Ar~~aP~ 452 (794)
...-++|+||||+|||+|+..++... +.++++++..+-.+... |. ....+..+++..+...|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 33457899999999999999998765 67888888766433221 11 112355666777777899
Q ss_pred EEEEcCcccccc
Q 003807 453 IIFIDEIDAVGS 464 (794)
Q Consensus 453 ILfIDEIDaL~~ 464 (794)
+|+||+|..+..
T Consensus 159 lVVIDSIq~l~~ 170 (446)
T PRK11823 159 LVVIDSIQTMYS 170 (446)
T ss_pred EEEEechhhhcc
Confidence 999999998854
No 264
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.79 E-value=5.9e-05 Score=69.77 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag 416 (794)
|.|+||||+|||++|+.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988764
No 265
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.75 E-value=0.00012 Score=82.38 Aligned_cols=75 Identities=28% Similarity=0.463 Sum_probs=53.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh------hh--------hhHHHHHHHHHHHhCCCe
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKAPC 452 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v------G~--------~~~~vr~lF~~Ar~~aP~ 452 (794)
...-++|+|+||+|||+|+..+|... +.+++++++.+-.+... |. ....+..+++.+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 33458999999999999999998754 46788888765332211 11 122345666777777899
Q ss_pred EEEEcCcccccc
Q 003807 453 IIFIDEIDAVGS 464 (794)
Q Consensus 453 ILfIDEIDaL~~ 464 (794)
+|+||+|..+..
T Consensus 161 lVVIDSIq~l~~ 172 (372)
T cd01121 161 LVIIDSIQTVYS 172 (372)
T ss_pred EEEEcchHHhhc
Confidence 999999998854
No 266
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.70 E-value=0.00016 Score=82.27 Aligned_cols=163 Identities=24% Similarity=0.304 Sum_probs=92.0
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCC--CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhh
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL--PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGA 436 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~--PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~ 436 (794)
+|.|.+++|+.|.-++- -.+++-..-|.++ ..+|+|.|.||+-|+-|.+.|.+-+....+..--.. .-+|.++
T Consensus 343 EIyGheDVKKaLLLlLV--Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTA 417 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV--GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTA 417 (721)
T ss_pred hhccchHHHHHHHHHhh--CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccch
Confidence 58999999998854332 2333322223333 357999999999999999999987765554432111 1133333
Q ss_pred HHHHHHHHHH--Hh------CCCeEEEEcCcccccccccccccchHHHHHHHHHh------hhccc--cCCcEEEEEEcC
Q 003807 437 RRVRSLFQAA--KK------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE------MDGFE--QNEGIILMAATN 500 (794)
Q Consensus 437 ~~vr~lF~~A--r~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e------LDg~~--~~~~VIVIaATN 500 (794)
.-+++-..-- -. ....|-.|||+|.+... .+..+....++ -.|+. -+.+.-|+||.|
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-------DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-------DRTAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-------hhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 3332211100 00 11248899999999542 12222222111 11111 133456778888
Q ss_pred CCC-------------CCChhhcCCCccceEE-EccCCCHHHHHHHHHH
Q 003807 501 LPD-------------ILDPALTRPGRFDRHI-VVPNPDVRGRQEILEL 535 (794)
Q Consensus 501 ~p~-------------~LD~ALlRpGRFdr~I-~V~lPd~~eR~eILk~ 535 (794)
... .|+.||++ |||... -.+.||.+.-..+.++
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHH
Confidence 543 57899998 999854 3467776655554444
No 267
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00032 Score=69.96 Aligned_cols=26 Identities=42% Similarity=0.645 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.+.-++++|+||+|||+++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 44569999999999999999999866
No 268
>PHA00729 NTP-binding motif containing protein
Probab=97.66 E-value=8.6e-05 Score=77.97 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag 416 (794)
.++|+|+||||||+||.+++.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 269
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.63 E-value=0.00024 Score=73.55 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=30.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
.+...-++|+||||+|||++|..+|.+. +.+.+++++.
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3334457999999999999999998744 7788888876
No 270
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00048 Score=84.19 Aligned_cols=161 Identities=23% Similarity=0.336 Sum_probs=107.2
Q ss_pred CcccccCC-HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeC
Q 003807 356 TFKDVKGC-DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAG 424 (794)
Q Consensus 356 tFdDVvG~-deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~is~ 424 (794)
.++-++|. ++. ++.+++.|.... .++-+|.|.||+|||.++.-+|... +..++.++.
T Consensus 184 kldPvigr~dee---irRvi~iL~Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEE---IRRVIEILSRKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHH---HHHHHHHHhccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36778887 444 444455444322 2578999999999999999999866 234566665
Q ss_pred cch--hhhhhhhhhHHHHHHHHHHH-hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCC
Q 003807 425 SEF--EEMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (794)
Q Consensus 425 se~--~e~~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~ 501 (794)
..+ ..++-|+.+.+++.+.+.+. .+...||||||++-+.+...... .....|-|-..+ .+.++-+||||..
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~--~~d~~nlLkp~L----~rg~l~~IGatT~ 325 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG--AIDAANLLKPLL----ARGGLWCIGATTL 325 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch--HHHHHHhhHHHH----hcCCeEEEecccH
Confidence 533 34567888899999999888 44567999999999976543311 222333332222 2445889998773
Q ss_pred CC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 502 PD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 502 p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
.. .-||++-| ||+. +.++.|+...-..||...-
T Consensus 326 e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 326 ETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLS 363 (898)
T ss_pred HHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhh
Confidence 32 34899998 8964 5678888777666665543
No 271
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.60 E-value=0.00043 Score=71.19 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
..-++++|+||+|||+++..+|.+. +.+.++++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3448999999999999999998765 5677777664
No 272
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.60 E-value=0.00037 Score=76.88 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=65.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-------------h---hhhhhHHHHHHHHHHHhCCCe
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------------F---VGVGARRVRSLFQAAKKKAPC 452 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~-------------~---vG~~~~~vr~lF~~Ar~~aP~ 452 (794)
+-++|+||||||||+||-.++.+. |.+.++++..+.... + ....+..+..+....+...+.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 458899999999999988776544 677777776442211 0 011122233333334567789
Q ss_pred EEEEcCccccccccccc---c----cchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 453 IIFIDEIDAVGSTRKQW---E----GHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 453 ILfIDEIDaL~~~r~~~---~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
+|+||-+.++.+...-. . +...+.+++++..|.+.-...++.+|.+..
T Consensus 136 lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 136 IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred EEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999987542111 0 111234456666666655566667766543
No 273
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.57 E-value=0.00067 Score=71.28 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=46.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh------h-----------------------h--
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------G-----------------------V-- 434 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v------G-----------------------~-- 434 (794)
+...-++++||||||||+++..++... |.+.++++..+-...+. | .
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 334568999999999999975554433 66777776543211100 0 0
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCccccc
Q 003807 435 GARRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 435 ~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
....+..+........|.+++|||+-.+.
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 02233344555555578899999998864
No 274
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.57 E-value=0.00056 Score=71.37 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
|.+....++++||||||||+++..++.+. |.+.++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 44445668999999999999999997643 67777776543
No 275
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.55 E-value=0.00024 Score=69.50 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.+..|+|+|+||||||++|+++|..++.+|+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456899999999999999999999999988853
No 276
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.55 E-value=7e-05 Score=69.40 Aligned_cols=31 Identities=39% Similarity=0.737 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
|+|.||||+||||+|+.+|...|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776543
No 277
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.55 E-value=0.00012 Score=74.75 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=58.3
Q ss_pred EEEEcCCCCcHHHHHHHH-HHh---cCCCEEEEeCcchh-hh---hhhhhhH-------------HHHHHHHHHHhCCCe
Q 003807 394 ILLTGAPGTGKTLLAKAI-AGE---AGVPFFYRAGSEFE-EM---FVGVGAR-------------RVRSLFQAAKKKAPC 452 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAI-A~e---ag~pfi~is~se~~-e~---~vG~~~~-------------~vr~lF~~Ar~~aP~ 452 (794)
.+++|.||+|||+.|-.. ... .|.+++. +...+. +. +.+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999987555 332 3777665 443221 10 0000000 001111111111457
Q ss_pred EEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCC
Q 003807 453 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPD 525 (794)
Q Consensus 453 ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd 525 (794)
+|+|||++.+.+.+..........+ ..+.. ....++-||.+|..+..||+.+++ +.+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~~~~~~~~~----~~l~~-hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVPEII----EFLAQ-HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T-T----HHH----HGGGG-CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccccccchHHH----HHHHH-hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 9999999999887654221122233 33322 234567788899999999999976 777777775543
No 278
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.55 E-value=0.0032 Score=71.58 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=78.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 472 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~ 472 (794)
-++|+||.+||||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh--------
Confidence 799999999999999988888775556666665554322111 1112222222222447999999998832
Q ss_pred hHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHH-------------HHHHHhcc
Q 003807 473 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQE-------------ILELYLQD 539 (794)
Q Consensus 473 ~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~e-------------ILk~~l~~ 539 (794)
-...+..+. |.... .+++.+++...-....+-.=+||. ..+.+.+-+..+... .++.|+..
T Consensus 109 W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Yl~~ 182 (398)
T COG1373 109 WERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFEKYLET 182 (398)
T ss_pred HHHHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 133444443 32111 455544443322223333346884 677777788888754 56777765
Q ss_pred CCCC
Q 003807 540 KPLA 543 (794)
Q Consensus 540 ~~l~ 543 (794)
.+..
T Consensus 183 GGfP 186 (398)
T COG1373 183 GGFP 186 (398)
T ss_pred CCCc
Confidence 4443
No 279
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.53 E-value=0.00022 Score=74.70 Aligned_cols=73 Identities=23% Similarity=0.221 Sum_probs=41.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch----------hhhhhhhhhHHHHHHHHHHHh--CCCeEEEE
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF----------EEMFVGVGARRVRSLFQAAKK--KAPCIIFI 456 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~----------~e~~vG~~~~~vr~lF~~Ar~--~aP~ILfI 456 (794)
+.|..+||||+||+|||++|+.+++. ..++..+++.- ...-.......+.+.+..... ..+.+|+|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 34667999999999999999999632 22333222110 000001111233333433332 34579999
Q ss_pred cCccccc
Q 003807 457 DEIDAVG 463 (794)
Q Consensus 457 DEIDaL~ 463 (794)
|.|+.+.
T Consensus 88 DsI~~l~ 94 (220)
T TIGR01618 88 DNISALQ 94 (220)
T ss_pred ecHHHHH
Confidence 9999874
No 280
>PRK08118 topology modulation protein; Reviewed
Probab=97.51 E-value=0.00018 Score=71.84 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=30.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 425 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~s 425 (794)
-|++.||||+||||+|+.|+...+.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999999887643
No 281
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.50 E-value=0.00016 Score=84.50 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=44.4
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEeC
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAG 424 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-g~pfi~is~ 424 (794)
-|+|+.|++++++.+.+.+. .... .++. ..+-++|.||||+|||+||++||+.+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~---~Aa~--gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFR---HAAQ--GLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHH---HHHH--hcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 49999999999887765442 2111 1111 22478899999999999999999966 346666544
No 282
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.47 E-value=0.00024 Score=76.58 Aligned_cols=113 Identities=22% Similarity=0.363 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC----------CEEEEe-Ccchhhhh-------hh------hhhHHHHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGV----------PFFYRA-GSEFEEMF-------VG------VGARRVRSLFQAAK 447 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~----------pfi~is-~se~~e~~-------vG------~~~~~vr~lF~~Ar 447 (794)
++++|.||||+|||+|.+++++...- ++..++ ..++...+ +| ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999997632 222111 11221111 01 01122345677777
Q ss_pred hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhh--------cCCCccceEE
Q 003807 448 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL--------TRPGRFDRHI 519 (794)
Q Consensus 448 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~AL--------lRpGRFdr~I 519 (794)
...|.+|++||+.. ...+..++..+. .+..+|++|+.++ +.... +..+-|++.+
T Consensus 192 ~~~P~villDE~~~------------~e~~~~l~~~~~-----~G~~vI~ttH~~~-~~~~~~r~~~~~l~~~~~~~r~i 253 (270)
T TIGR02858 192 SMSPDVIVVDEIGR------------EEDVEALLEALH-----AGVSIIATAHGRD-VEDLYKRPVFKELIENEAFERYV 253 (270)
T ss_pred hCCCCEEEEeCCCc------------HHHHHHHHHHHh-----CCCEEEEEechhH-HHHHHhChHHHHHHhcCceEEEE
Confidence 78999999999521 233445555543 3567788887543 22232 2345677777
Q ss_pred Ecc
Q 003807 520 VVP 522 (794)
Q Consensus 520 ~V~ 522 (794)
.+.
T Consensus 254 ~L~ 256 (270)
T TIGR02858 254 VLS 256 (270)
T ss_pred EEe
Confidence 664
No 283
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.46 E-value=0.0019 Score=71.94 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=92.4
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh------h-
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM------F- 431 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~------~- 431 (794)
.|.+.+.....|..++- +. ....|..+.|+|-.|||||.+.|.+-+..+.+.++++|-+.... .
T Consensus 7 ~v~~Re~qi~~L~~Llg---~~------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLG---NN------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhC---CC------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 34566666555544432 11 22578889999999999999999999999999999988654211 0
Q ss_pred --------hh----hhhHHHHH---HHHH--HHhC--CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCc
Q 003807 432 --------VG----VGARRVRS---LFQA--AKKK--APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG 492 (794)
Q Consensus 432 --------vG----~~~~~vr~---lF~~--Ar~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~ 492 (794)
.| .....+.+ +|.+ +..+ ..-.|++|.+|.+.. .....++.|+..-+-...+ .
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-------~~a~ll~~l~~L~el~~~~-~ 149 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-------MDAILLQCLFRLYELLNEP-T 149 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-------cchHHHHHHHHHHHHhCCC-c
Confidence 01 11122222 2333 2112 245789999999942 2334555555443322223 3
Q ss_pred EEEEEE-cCCCCCCChhhcCCCccce-EEEccCCCHHHHHHHHHHH
Q 003807 493 IILMAA-TNLPDILDPALTRPGRFDR-HIVVPNPDVRGRQEILELY 536 (794)
Q Consensus 493 VIVIaA-TN~p~~LD~ALlRpGRFdr-~I~V~lPd~~eR~eILk~~ 536 (794)
+.+|.. +-.+. .-+.+-|-++- .++||.|+.++...|+..-
T Consensus 150 i~iils~~~~e~---~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 150 IVIILSAPSCEK---QYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eEEEEeccccHH---HhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 333322 22221 12223345544 6799999999999998654
No 284
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.0037 Score=66.66 Aligned_cols=177 Identities=23% Similarity=0.265 Sum_probs=101.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC---CEEEEeCcch-----hhhhhhh------------hhHHHHHHHHHHHh-CCC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAGSEF-----EEMFVGV------------GARRVRSLFQAAKK-KAP 451 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~---pfi~is~se~-----~e~~vG~------------~~~~vr~lF~~Ar~-~aP 451 (794)
-+.++|+-|||||.+.||+....+- -.++++...+ .+.++-+ ....-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 3679999999999999987766532 2334443322 2221111 12222333333333 456
Q ss_pred eEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcC------CCccceEEEccCCC
Q 003807 452 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR------PGRFDRHIVVPNPD 525 (794)
Q Consensus 452 ~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlR------pGRFdr~I~V~lPd 525 (794)
-++++||.+.+... .-..+.-|.+.-++..+.-+|+.||-.. |.+.+++ --|++-.|++++.+
T Consensus 133 v~l~vdEah~L~~~-------~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDS-------ALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChh-------HHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEecCCcC
Confidence 89999999998542 1223333333223333444577766432 3332221 12677778889999
Q ss_pred HHHHHHHHHHHhccCCCC----CcccHHHHHH-------HHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 526 VRGRQEILELYLQDKPLA----DDVDVKAIAR-------DLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 526 ~~eR~eILk~~l~~~~l~----~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
..+-...++++++.-... .+-.+..++. -+.+++..|...|...+...|+...++
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 998888898888765333 2333444444 445555666666666677777766553
No 285
>PRK07261 topology modulation protein; Provisional
Probab=97.42 E-value=0.00031 Score=70.42 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
|+++|+||+||||||+.++...+.|++..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 8999999999999999999999999887654
No 286
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00058 Score=76.80 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=62.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc----C-CCEEEEeCcchh----h------hhhhhhh------HHHHHHHHHHHhC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA----G-VPFFYRAGSEFE----E------MFVGVGA------RRVRSLFQAAKKK 449 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea----g-~pfi~is~se~~----e------~~vG~~~------~~vr~lF~~Ar~~ 449 (794)
...++|+||+|+|||+++..+|..+ | ..+..+++..+. + ...|... ..+...+... .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l--~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL--R 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--c
Confidence 4578999999999999999999764 3 244445544431 0 0111111 1222222222 3
Q ss_pred CCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc-CCcEEEEEEcCCCCCCChhh
Q 003807 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-NEGIILMAATNLPDILDPAL 509 (794)
Q Consensus 450 aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~-~~~VIVIaATN~p~~LD~AL 509 (794)
..++|+||...... ....+...+..+.+... ...++|+.+|+..+.++..+
T Consensus 215 ~~DlVLIDTaG~~~---------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 215 NKHMVLIDTIGMSQ---------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCCEEEEcCCCCCc---------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 45799999975432 12345555555544332 34578888888777666544
No 287
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.41 E-value=0.00078 Score=77.68 Aligned_cols=74 Identities=24% Similarity=0.365 Sum_probs=51.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh------hh--------hhHHHHHHHHHHHhCCCeE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKAPCI 453 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v------G~--------~~~~vr~lF~~Ar~~aP~I 453 (794)
..-+||+|+||+|||+|+..++... +.+.+++++.+-..... |. ....+..+...+....|.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~ 173 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQA 173 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcE
Confidence 3458899999999999999997754 45788888755432211 11 0123455666666778999
Q ss_pred EEEcCcccccc
Q 003807 454 IFIDEIDAVGS 464 (794)
Q Consensus 454 LfIDEIDaL~~ 464 (794)
|+||.|..+..
T Consensus 174 vVIDSIq~l~~ 184 (454)
T TIGR00416 174 CVIDSIQTLYS 184 (454)
T ss_pred EEEecchhhcc
Confidence 99999998854
No 288
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.40 E-value=0.0015 Score=73.15 Aligned_cols=141 Identities=23% Similarity=0.301 Sum_probs=77.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHH---------------------
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA--------------------- 446 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~A--------------------- 446 (794)
..+|+|++|||.-|||||+|.-.+-...-. +.-.---....|+-...+++.++-.+-
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~--i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~ 188 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP--IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVAD 188 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc--hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHH
Confidence 456999999999999999999887654321 100000000011111111211111111
Q ss_pred -HhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC-CCCCh-hhcCCCccceEEEccC
Q 003807 447 -KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DILDP-ALTRPGRFDRHIVVPN 523 (794)
Q Consensus 447 -r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p-~~LD~-ALlRpGRFdr~I~V~l 523 (794)
-...-++|++||+..--- ...-+++.|...|= +.||+++||+|++ ++|-+ .+.| ...+|
T Consensus 189 eIa~ea~lLCFDEfQVTDV-------ADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR------~~F~P- 250 (467)
T KOG2383|consen 189 EIAEEAILLCFDEFQVTDV-------ADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQR------ENFIP- 250 (467)
T ss_pred HHhhhceeeeechhhhhhH-------HHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhh------hhhhh-
Confidence 001136999999864311 12445666665543 3589999999965 44432 2222 22222
Q ss_pred CCHHHHHHHHHHHhccCCCCCcccHHHHHH
Q 003807 524 PDVRGRQEILELYLQDKPLADDVDVKAIAR 553 (794)
Q Consensus 524 Pd~~eR~eILk~~l~~~~l~~dvdl~~IAr 553 (794)
-..+|+++++-..++..+|....++
T Consensus 251 -----fI~~L~~rc~vi~ldS~vDYR~~~~ 275 (467)
T KOG2383|consen 251 -----FIALLEERCKVIQLDSGVDYRRKAK 275 (467)
T ss_pred -----HHHHHHHhheEEecCCccchhhccC
Confidence 3457788887777788888875554
No 289
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.39 E-value=0.0011 Score=60.52 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
++++++||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888887765
No 290
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.39 E-value=0.00042 Score=76.52 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=76.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-EEEeCcchhhh-------hhhhhhHHHHHHHHHHHhCCCeEEEEcCc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-FYRAGSEFEEM-------FVGVGARRVRSLFQAAKKKAPCIIFIDEI 459 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~eag~pf-i~is~se~~e~-------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEI 459 (794)
..+|+|+.|||+-|.|||+|.-..-..+..+- ..+.-..|.-. ..|.. .-+..+-+... ..-.+|++||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 34789999999999999999999988764432 11111122110 11221 00111111111 11249999998
Q ss_pred ccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC-CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 460 DAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 460 DaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p-~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
.-=- -.+..++..|+.+|= ..||++++|+|.+ +.|-+.=+...|| + | -.++++.++.
T Consensus 140 ~VtD-------I~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~F-----L--P----~I~li~~~~~ 197 (367)
T COG1485 140 EVTD-------IADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERF-----L--P----AIDLIKSHFE 197 (367)
T ss_pred eecC-------hHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhh-----H--H----HHHHHHHheE
Confidence 5421 123567778887764 3589999999953 3332221222344 2 2 2456777777
Q ss_pred cCCCCCcccHH
Q 003807 539 DKPLADDVDVK 549 (794)
Q Consensus 539 ~~~l~~dvdl~ 549 (794)
-..++..+|..
T Consensus 198 v~~vD~~~DYR 208 (367)
T COG1485 198 VVNVDGPVDYR 208 (367)
T ss_pred EEEecCCcccc
Confidence 66666665553
No 291
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.38 E-value=0.00085 Score=74.17 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=63.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-------------hh---hhhhHHHHHHHHHHHhCCCe
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------------FV---GVGARRVRSLFQAAKKKAPC 452 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~-------------~v---G~~~~~vr~lF~~Ar~~aP~ 452 (794)
+-+.++||||||||+||-.++.++ |...++++..+-.+. ++ ...+..+..+-...+...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 347899999999999999887544 677888876432111 00 11122222233334566789
Q ss_pred EEEEcCccccccccccc--cc-----chHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 453 IIFIDEIDAVGSTRKQW--EG-----HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 453 ILfIDEIDaL~~~r~~~--~~-----~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
+|+||-+-++.+...-. .+ ...+.+.+.|..|...-...++.+|.+..
T Consensus 136 lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 136 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred EEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 99999999987532111 00 11234455565555554555666666543
No 292
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.36 E-value=0.0008 Score=69.18 Aligned_cols=104 Identities=23% Similarity=0.318 Sum_probs=57.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCE-------------EEEeCcchh----hhhhhhhhHHHHHHHHHHHhC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA-----GVPF-------------FYRAGSEFE----EMFVGVGARRVRSLFQAAKKK 449 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea-----g~pf-------------i~is~se~~----e~~vG~~~~~vr~lF~~Ar~~ 449 (794)
+-++|+||+|+|||++.|.++... |.++ ..++..+-. ..+ .....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~-~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYF-YAELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChH-HHHHHHHHHHHHhccCC
Confidence 468999999999999999998633 4432 111111100 011 11124566777766655
Q ss_pred CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 450 aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.|.++++||.-+-... .........++..+.. .+..+|.+|+.++.+
T Consensus 105 ~p~llllDEp~~glD~-----~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGTNS-----RERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCCCH-----HHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 7899999996432110 0112233445555431 244566677766543
No 293
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.33 E-value=0.001 Score=77.58 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.+|||+|.|||||+-+.|.+++-....++..
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 4699999999999999999999887776653
No 294
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.33 E-value=0.0009 Score=68.98 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=62.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---C------CCEEEEeCcchh-h-hhh------h---------------hh
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---G------VPFFYRAGSEFE-E-MFV------G---------------VG 435 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---g------~pfi~is~se~~-e-~~v------G---------------~~ 435 (794)
.+...-+.|+||||+|||+++..+|... + ...++++..+-. . .+. + ..
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence 3334458899999999999999998754 3 566777765421 0 000 0 01
Q ss_pred hHHHHHHHHHH----HhCCCeEEEEcCcccccccccccc---cchHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 436 ARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 436 ~~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~---~~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
...+..++... ....+++|+||-|..+........ ....+.+.+++..|..+....++.||.++
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 11122222222 245678999999998854321111 12234556666666665445555555544
No 295
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.33 E-value=0.00056 Score=64.99 Aligned_cols=34 Identities=38% Similarity=0.609 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
|+++||||+|||++|+.++...+ ...++...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 78999999999999999999998 44455555443
No 296
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.31 E-value=0.00091 Score=68.55 Aligned_cols=96 Identities=26% Similarity=0.320 Sum_probs=52.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh----hhhhhhHHHHHHHHHHH---------hCCCeEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVGVGARRVRSLFQAAK---------KKAPCIIFI 456 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~----~vG~~~~~vr~lF~~Ar---------~~aP~ILfI 456 (794)
.++|.||||||||++++.+...+ +..++.+....-... ..|.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 57889999999999999986544 666776654332111 11111222222222111 122369999
Q ss_pred cCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 457 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 457 DEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
||+..+. ...+..++..... ...+++++|=.+
T Consensus 100 DEasmv~----------~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 100 DEASMVD----------SRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SSGGG-B----------HHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ecccccC----------HHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 9998873 3456666665543 345677777555
No 297
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.31 E-value=0.00081 Score=69.72 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=62.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcch-h-hhhh------------------------
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-EMFV------------------------ 432 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se~-~-e~~v------------------------ 432 (794)
.+...-+.|+||||||||+++..++... +...++++..+- . ..+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 3344557899999999999999998543 256777776541 0 0000
Q ss_pred -hhhhHHHHHHHHHHHhC-CCeEEEEcCcccccccccccc---cchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 433 -GVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 433 -G~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~---~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
......+..+-...... .+.+|+||-+..+....-... ....+.+..++..|..+....++.||.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 00011112222223344 789999999998743111111 122344556666665554455666665543
No 298
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.30 E-value=0.0014 Score=67.97 Aligned_cols=76 Identities=25% Similarity=0.311 Sum_probs=47.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchhhh--------------hh----------------
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM--------------FV---------------- 432 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~e~--------------~v---------------- 432 (794)
|.+....+|+.||||||||+|+..++.+. |-+.++++..+-.+. +.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44455669999999999999998876433 788888875432111 00
Q ss_pred ---hhhhHHHHHHHHHHHhCCCeEEEEcCcccc
Q 003807 433 ---GVGARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (794)
Q Consensus 433 ---G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (794)
.........+.+..+...+.+++||-+..+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 011122333444445566789999999998
No 299
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.30 E-value=0.002 Score=67.10 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSE 426 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se 426 (794)
|.....-++|.|+||+|||+++..++... +.++++++...
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 44444568999999999999998886644 77888877543
No 300
>PRK14974 cell division protein FtsY; Provisional
Probab=97.29 E-value=0.0024 Score=70.97 Aligned_cols=73 Identities=26% Similarity=0.324 Sum_probs=45.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-------h---hh----------hhhHHHHHHHHHH
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------F---VG----------VGARRVRSLFQAA 446 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~-------~---vG----------~~~~~vr~lF~~A 446 (794)
.|.-++|+||||+||||++..+|..+ |..+..+++..+... + .| .....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999888888754 556655665433110 0 01 0112233444444
Q ss_pred HhCCCeEEEEcCcccc
Q 003807 447 KKKAPCIIFIDEIDAV 462 (794)
Q Consensus 447 r~~aP~ILfIDEIDaL 462 (794)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 4455568999987665
No 301
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.29 E-value=0.00078 Score=84.63 Aligned_cols=137 Identities=26% Similarity=0.339 Sum_probs=88.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh---hh----hhh--hhHHHH--HHHHHHHhCCCeEEEEcCc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE---MF----VGV--GARRVR--SLFQAAKKKAPCIIFIDEI 459 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e---~~----vG~--~~~~vr--~lF~~Ar~~aP~ILfIDEI 459 (794)
-+++||.|.||+|||+|..|+|++.|-.++.++.++-.+ .| .++ +.-+.+ .++...+.+ .-|++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--GWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--CEEEeehh
Confidence 357999999999999999999999999999999876422 11 111 111111 223333333 48999998
Q ss_pred ccccccccccccchHHHHHHHHH--------hhh-ccccCCcEEEEEEcCCCC------CCChhhcCCCccceEEEccCC
Q 003807 460 DAVGSTRKQWEGHTKKTLHQLLV--------EMD-GFEQNEGIILMAATNLPD------ILDPALTRPGRFDRHIVVPNP 524 (794)
Q Consensus 460 DaL~~~r~~~~~~~~~~LnqLL~--------eLD-g~~~~~~VIVIaATN~p~------~LD~ALlRpGRFdr~I~V~lP 524 (794)
.--.. ..-.-+|..|. ++| .|.-..++.|+||-|..+ .|++.++. || .+|.+...
T Consensus 1621 NLaSQ-------SVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~d~l 1690 (4600)
T COG5271 1621 NLASQ-------SVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKMDGL 1690 (4600)
T ss_pred hhhHH-------HHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEEeccc
Confidence 65421 01122333332 222 123345678888887543 58888887 88 57788888
Q ss_pred CHHHHHHHHHHHhcc
Q 003807 525 DVRGRQEILELYLQD 539 (794)
Q Consensus 525 d~~eR~eILk~~l~~ 539 (794)
+.++...|..+....
T Consensus 1691 t~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1691 TTDDITHIANKMYPQ 1705 (4600)
T ss_pred ccchHHHHHHhhCCc
Confidence 888888888776543
No 302
>PRK04296 thymidine kinase; Provisional
Probab=97.27 E-value=0.0012 Score=67.29 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=41.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc----chhh---hhhhhh-----hHHHHHHHHHHH--hCCCeEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS----EFEE---MFVGVG-----ARRVRSLFQAAK--KKAPCIIF 455 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s----e~~e---~~vG~~-----~~~vr~lF~~Ar--~~aP~ILf 455 (794)
-++++||||+|||+++..++.++ +..++.+... .... ...|.. .....+++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 5555555331 1000 011110 112334444443 34567999
Q ss_pred EcCcccc
Q 003807 456 IDEIDAV 462 (794)
Q Consensus 456 IDEIDaL 462 (794)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999765
No 303
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.27 E-value=0.0012 Score=81.20 Aligned_cols=203 Identities=16% Similarity=0.221 Sum_probs=116.6
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHhcCch--hhhhcCCCCC-c-eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPS--KFTRLGGKLP-K-GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~--~~~~lG~~~P-k-gVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
.....+....++.|.......+.+.+...++++ .|...+..-- + .+|++||||+|||+.+.++|.+.|..++..|.
T Consensus 311 ~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Na 390 (871)
T KOG1968|consen 311 TEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNA 390 (871)
T ss_pred ccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCc
Confidence 344455556777777666555554444433321 1222111111 2 36999999999999999999999999999998
Q ss_pred cchhhhhh-----hh--hhHHHHHHHHH---HHh-CCC-eEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCc
Q 003807 425 SEFEEMFV-----GV--GARRVRSLFQA---AKK-KAP-CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG 492 (794)
Q Consensus 425 se~~e~~v-----G~--~~~~vr~lF~~---Ar~-~aP-~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~ 492 (794)
++....+. |. +...+...|.. ... ... .||++||+|.+... +. ..-..+.++.. ...
T Consensus 391 s~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-dR---g~v~~l~~l~~-------ks~ 459 (871)
T KOG1968|consen 391 SDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-DR---GGVSKLSSLCK-------KSS 459 (871)
T ss_pred cccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-hh---hhHHHHHHHHH-------hcc
Confidence 87654322 11 11223333300 000 122 29999999998651 10 11233344443 233
Q ss_pred EEEEEEcCCCCCCCh-hhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHH
Q 003807 493 IILMAATNLPDILDP-ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIK 565 (794)
Q Consensus 493 VIVIaATN~p~~LD~-ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~ 565 (794)
+-+|+++|....... ++. |.+..++|+.|+...+..-+...+...... .+-.++.+.. ||++.++.-...
T Consensus 460 ~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFW 535 (871)
T ss_pred CCeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhh
Confidence 456777886555443 333 444568999999998888777666443222 2333444544 888777765544
No 304
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.27 E-value=0.00026 Score=69.77 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=36.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEEeCcch
Q 003807 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEF 427 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p---fi~is~se~ 427 (794)
++|.++..++|...+. .. ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4788887766665553 11 22345689999999999999999997766332 777777665
No 305
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00045 Score=73.18 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
-|-|.||+|||||||.+.||+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999983
No 306
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0018 Score=73.38 Aligned_cols=110 Identities=12% Similarity=0.137 Sum_probs=63.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCcchhh-------hh---------hhhhhHHHHHHHHHH
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSEFEE-------MF---------VGVGARRVRSLFQAA 446 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea-------g~pfi~is~se~~e-------~~---------vG~~~~~vr~lF~~A 446 (794)
.|+.++|+||+|+||||++..+|..+ +..+..+++..+.. .| .......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46789999999999999999998754 33444444433211 01 111223333333333
Q ss_pred HhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccC-CcEEEEEEcCCCCCCChhh
Q 003807 447 KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILDPAL 509 (794)
Q Consensus 447 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~-~~VIVIaATN~p~~LD~AL 509 (794)
....+|+||.+..... ....+..+...++..... ..++|+.+|.....+...+
T Consensus 253 --~~~DlVLIDTaGr~~~--------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK--------DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --CCCCEEEEcCCCCCcc--------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 3457999999876632 122344555555544333 4677887777666665444
No 307
>PHA02624 large T antigen; Provisional
Probab=97.20 E-value=0.002 Score=75.95 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=70.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 466 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 466 (794)
|.+..+.++|+||||||||+++.+|++.++...+.++++.-...| ...-.....+++||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~F------------wL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNF------------ELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHH------------HhhhhhhceEEEeeecccccccc
Confidence 334445899999999999999999999996667777754432221 11111112488888875432211
Q ss_pred c-ccccchHHHHHHHHHhhhcccc-------CCc-----EEEEEEcCCCCCCChhhcCCCccceEEEccC
Q 003807 467 K-QWEGHTKKTLHQLLVEMDGFEQ-------NEG-----IILMAATNLPDILDPALTRPGRFDRHIVVPN 523 (794)
Q Consensus 467 ~-~~~~~~~~~LnqLL~eLDg~~~-------~~~-----VIVIaATN~p~~LD~ALlRpGRFdr~I~V~l 523 (794)
. -..+..-.-+..|-..|||.-+ ... -..|.||| ...|+..+.- ||.+++.|..
T Consensus 495 ~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHH--HHHHhccccc
Confidence 0 0011111223455566776510 000 12344667 3667878876 8988888853
No 308
>PRK06762 hypothetical protein; Provisional
Probab=97.20 E-value=0.0011 Score=65.14 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
|.-++|+|+||+|||++|+.++..++..+..++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 567899999999999999999999866676777655543
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.18 E-value=0.0027 Score=66.78 Aligned_cols=40 Identities=35% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCcc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSE 426 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~e---ag~pfi~is~se 426 (794)
|.+....+|++||||||||++|..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4445567999999999999999876554 367777776544
No 310
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.17 E-value=0.00048 Score=73.33 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=60.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---CEEEEeC-cchh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAG-SEFE 428 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~---pfi~is~-se~~ 428 (794)
...+++++.-.....+.+.+++...-. ...++++.||+|+|||++++++..+..- .++.+.. .++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 345788887766655556555543211 1247999999999999999999987733 3443321 1110
Q ss_pred hh------h-hhhhhHHHHHHHHHHHhCCCeEEEEcCccc
Q 003807 429 EM------F-VGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (794)
Q Consensus 429 e~------~-vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 461 (794)
-. + .........+++..+-+..|++|+|+||..
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 00 0 112334567788888888999999999854
No 311
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.17 E-value=0.0017 Score=66.60 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=42.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC----CEEEEeCc-chhh---------hhhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAGS-EFEE---------MFVGVGARRVRSLFQAAKKKAPCIIFIDE 458 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~----pfi~is~s-e~~e---------~~vG~~~~~vr~lF~~Ar~~aP~ILfIDE 458 (794)
-++++||+|+|||++++++++.... .++.+... ++.. .-+|.....+.+.+..+-...|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887742 22222111 1100 00122223345556666667899999999
Q ss_pred c
Q 003807 459 I 459 (794)
Q Consensus 459 I 459 (794)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 312
>PRK10536 hypothetical protein; Provisional
Probab=97.16 E-value=0.0018 Score=69.35 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=31.7
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
.|.-|.+.......+...+. +. .-++++||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~---~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE---SK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh---cC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 34456666666555544332 21 25999999999999999999885
No 313
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.14 E-value=0.00039 Score=69.85 Aligned_cols=27 Identities=48% Similarity=0.834 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---GVPF 419 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g~pf 419 (794)
.++|+|+||+||||+++.+...+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999999887 5553
No 314
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.14 E-value=0.015 Score=63.48 Aligned_cols=97 Identities=27% Similarity=0.318 Sum_probs=60.4
Q ss_pred cccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEE--EeCcch---
Q 003807 359 DVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFY--RAGSEF--- 427 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~--is~se~--- 427 (794)
.+.|+.-+++.+...+.. +.++. .+.|--+=|+|++||||..+++.||+.. ..|++. +..-.|
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 378988888887776654 33331 3446567789999999999999999966 223331 111111
Q ss_pred --hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccc
Q 003807 428 --EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS 464 (794)
Q Consensus 428 --~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 464 (794)
.+.|--+-...+ -..++....+|+++||.|.+.+
T Consensus 157 ~~ie~Yk~eL~~~v---~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 157 SKIEDYKEELKNRV---RGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHHHHHHHHHH---HHHHHhcCCceEEechhhhcCH
Confidence 222322222333 3334455667999999999954
No 315
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.14 E-value=0.0024 Score=73.16 Aligned_cols=130 Identities=23% Similarity=0.333 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHH-----HHHHH---hCCCeEEEEcCccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSL-----FQAAK---KKAPCIIFIDEIDAVG 463 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~l-----F~~Ar---~~aP~ILfIDEIDaL~ 463 (794)
-+|||.|.|||-|+-|.|.+-.-+.+-++. ++.. +.-.|.++.-+|+- +-+-. -....|++|||+|.+-
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC
Confidence 469999999999999999997755443332 2211 01112222111110 00000 0123599999999994
Q ss_pred ccccccc-c-chHHHHHHHHHhhhccc--cCCcEEEEEEcCCC-----------CCC--ChhhcCCCccceEEEccCCCH
Q 003807 464 STRKQWE-G-HTKKTLHQLLVEMDGFE--QNEGIILMAATNLP-----------DIL--DPALTRPGRFDRHIVVPNPDV 526 (794)
Q Consensus 464 ~~r~~~~-~-~~~~~LnqLL~eLDg~~--~~~~VIVIaATN~p-----------~~L--D~ALlRpGRFdr~I~V~lPd~ 526 (794)
....-.- . --++++.- .-.|+. -+.+.-|+||.|.+ +.+ -+.+++ |||.++-+..--.
T Consensus 442 e~DRVAIHEAMEQQTISI---AKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~ 516 (729)
T KOG0481|consen 442 EDDRVAIHEAMEQQTISI---AKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHD 516 (729)
T ss_pred chhhhHHHHHHHhhhHHH---hhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEeccCc
Confidence 3110000 0 00112111 112221 13445577888855 123 367787 9999888754333
Q ss_pred HHH
Q 003807 527 RGR 529 (794)
Q Consensus 527 ~eR 529 (794)
++|
T Consensus 517 ~~~ 519 (729)
T KOG0481|consen 517 EER 519 (729)
T ss_pred chh
Confidence 333
No 316
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.13 E-value=0.0011 Score=71.52 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=50.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH------hcCCCEEEEeCcchhhh-hhhhhhHHHHHHHHHHHh--------CCCeEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAG------EAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKK--------KAPCII 454 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~------eag~pfi~is~se~~e~-~vG~~~~~vr~lF~~Ar~--------~aP~IL 454 (794)
....+||.||.|.||++||+-|-. ....+|+.++|..+... -+..--..++..|.-|+. .....+
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence 334699999999999999999854 44679999999887432 111111223333333322 234599
Q ss_pred EEcCcccccc
Q 003807 455 FIDEIDAVGS 464 (794)
Q Consensus 455 fIDEIDaL~~ 464 (794)
|+|||..++.
T Consensus 287 fldeigelga 296 (531)
T COG4650 287 FLDEIGELGA 296 (531)
T ss_pred ehHhhhhcCc
Confidence 9999999975
No 317
>PRK05973 replicative DNA helicase; Provisional
Probab=97.13 E-value=0.0028 Score=67.22 Aligned_cols=37 Identities=35% Similarity=0.342 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
...-++|.|+||+|||+++-.++.+. |.+.++++..+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 33458899999999999998886644 77777776543
No 318
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.13 E-value=0.0027 Score=65.55 Aligned_cols=124 Identities=25% Similarity=0.431 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHH
Q 003807 367 KQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA 446 (794)
Q Consensus 367 K~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~A 446 (794)
+..|..+|....+| |.+....++|.|+.|+|||++.+.|+.+ ++.-+..... ...... ..
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~------~kd~~~----~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFD------DKDFLE----QL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCC------CcHHHH----HH
Confidence 34444444443344 4555667889999999999999999666 2211111110 011111 11
Q ss_pred HhCCCeEEEEcCcccccccccccccchHHHHHHHHHh-hhcccc---------CCcEEEEEEcCCCCCC-ChhhcCCCcc
Q 003807 447 KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE-MDGFEQ---------NEGIILMAATNLPDIL-DPALTRPGRF 515 (794)
Q Consensus 447 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e-LDg~~~---------~~~VIVIaATN~p~~L-D~ALlRpGRF 515 (794)
... -|+.|||++.+..+ ....+..++.. .+.+.. ....++|||||..+-| |+.--| ||
T Consensus 94 ~~~--~iveldEl~~~~k~-------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf 162 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK-------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF 162 (198)
T ss_pred HHh--HheeHHHHhhcchh-------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE
Confidence 111 38999999998632 12344455432 222211 2246889999988755 555556 77
Q ss_pred ceEEEcc
Q 003807 516 DRHIVVP 522 (794)
Q Consensus 516 dr~I~V~ 522 (794)
..|.+.
T Consensus 163 -~~v~v~ 168 (198)
T PF05272_consen 163 -WPVEVS 168 (198)
T ss_pred -EEEEEc
Confidence 444544
No 319
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.13 E-value=0.0026 Score=61.26 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=40.0
Q ss_pred ccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 358 KDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
+.|.|+.-+++.+...+.. +.++ ..+.|.-+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3589999998888876665 4443 23445556699999999999999999975
No 320
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.11 E-value=0.0025 Score=67.28 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 428 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~ 428 (794)
|+|+|+||+|||++|+.++..+ +.+++.++...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 7899999999999999999876 5677777665443
No 321
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.10 E-value=0.0017 Score=73.97 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchhhhhhhhhhHHHH
Q 003807 365 DAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMFVGVGARRVR 440 (794)
Q Consensus 365 eaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~e~~vG~~~~~vr 440 (794)
.....|..++.++... .++++.||+|||||+++.+++... | -.++...+.... ..
T Consensus 194 ~k~~~L~rl~~fve~~-----------~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L---~~---- 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEPN-----------YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI---ST---- 252 (449)
T ss_pred HHHHHHHhhHHHHhcC-----------CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH---HH----
Confidence 3344455555555543 379999999999999999997762 3 112222221110 11
Q ss_pred HHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc---------ccCCcEEEEEEcC
Q 003807 441 SLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------EQNEGIILMAATN 500 (794)
Q Consensus 441 ~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~---------~~~~~VIVIaATN 500 (794)
..+.. -....+|+|||+..+.-.+ .+..+..+...|+.- ..+.+++++|-+|
T Consensus 253 ~~lg~--v~~~DlLI~DEvgylp~~~------~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 253 RQIGL--VGRWDVVAFDEVATLKFAK------PKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVP 313 (449)
T ss_pred HHHhh--hccCCEEEEEcCCCCcCCc------hHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccC
Confidence 11111 1345799999999874321 233444454445432 1233567777555
No 322
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.10 E-value=0.0027 Score=67.41 Aligned_cols=39 Identities=28% Similarity=0.249 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 425 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~s 425 (794)
|.....-++|.||||+|||+++..++..+ |.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 34444568899999999999999887653 6677777653
No 323
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.09 E-value=0.00085 Score=64.57 Aligned_cols=39 Identities=36% Similarity=0.561 Sum_probs=31.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 433 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG 433 (794)
+|+|+|+||+|||++|+.+|..++.+++.. ..+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcC
Confidence 489999999999999999999999998754 344443333
No 324
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.09 E-value=0.00059 Score=74.57 Aligned_cols=69 Identities=28% Similarity=0.379 Sum_probs=45.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEeCc-ch-------hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYRAGS-EF-------EEMFVGVGARRVRSLFQAAKKKAPCIIFIDE 458 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag-----~pfi~is~s-e~-------~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDE 458 (794)
++++++||+|+|||++++++.+... ..++.+.-. ++ .....+.......+++..+-+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4799999999999999999998762 333333211 11 1111121222566788888888899999998
Q ss_pred cc
Q 003807 459 ID 460 (794)
Q Consensus 459 ID 460 (794)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 73
No 325
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.08 E-value=0.0011 Score=66.34 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
+-++|.|+||+|||++|+.++...+.+++.++...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 4689999999999999999999998888877665553
No 326
>PRK13947 shikimate kinase; Provisional
Probab=97.08 E-value=0.00053 Score=67.58 Aligned_cols=31 Identities=35% Similarity=0.465 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
+|+|.|+||||||++++.+|..+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997643
No 327
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.04 E-value=0.003 Score=71.43 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag 416 (794)
.+|+||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 89999999999999999998663
No 328
>PRK09354 recA recombinase A; Provisional
Probab=97.04 E-value=0.0026 Score=70.97 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-h------------h---hhhhHHHHHHHHHHHhCCCe
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-F------------V---GVGARRVRSLFQAAKKKAPC 452 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~-~------------v---G~~~~~vr~lF~~Ar~~aP~ 452 (794)
+-++|+||||||||+||-.++.+. |...++++...-... + + ...+..+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 347899999999999998876543 677788776542111 0 0 01112222222334556789
Q ss_pred EEEEcCccccccccccc---c----cchHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 453 IIFIDEIDAVGSTRKQW---E----GHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 453 ILfIDEIDaL~~~r~~~---~----~~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
+|+||-+-++.+...-. . +...+.+.+.|..+-+.-...++.+|.+.
T Consensus 141 lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 141 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred EEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 99999999987531100 0 11123444555544444445566666553
No 329
>PRK04040 adenylate kinase; Provisional
Probab=97.01 E-value=0.013 Score=59.86 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc--CCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA--GVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea--g~pfi~ 421 (794)
|+-++++|+||+|||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 5679999999999999999999999 555543
No 330
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.01 E-value=0.006 Score=67.26 Aligned_cols=158 Identities=22% Similarity=0.347 Sum_probs=92.5
Q ss_pred ccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHH-HH--hcCCCEEEEeCcch--hhh---
Q 003807 360 VKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAI-AG--EAGVPFFYRAGSEF--EEM--- 430 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAI-A~--eag~pfi~is~se~--~e~--- 430 (794)
+.|..+..+.+.+++.. +... -...|++.||.|+|||.+.... +. +.|-.|+.+....+ .++
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 46777777777776664 1111 2247999999999999765443 33 56667765543322 111
Q ss_pred ----------------hhhhhhHHHHHHHHHHHhC-----CCeEEEEcCcccccccccccccchHHHH-HHHHHhhhccc
Q 003807 431 ----------------FVGVGARRVRSLFQAAKKK-----APCIIFIDEIDAVGSTRKQWEGHTKKTL-HQLLVEMDGFE 488 (794)
Q Consensus 431 ----------------~vG~~~~~vr~lF~~Ar~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~L-nqLL~eLDg~~ 488 (794)
..|.....+..+....+.. .+.|.++||||.+.+ +.++++ ..|+..-+ .
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~-------h~rQtllYnlfDisq--s 167 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP-------HSRQTLLYNLFDISQ--S 167 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc-------chhhHHHHHHHHHHh--h
Confidence 1122233333444433331 234666789999865 334443 33333222 2
Q ss_pred cCCcEEEEEEcCCCCCC---ChhhcCCCccceE-EEccC-CCHHHHHHHHHHHh
Q 003807 489 QNEGIILMAATNLPDIL---DPALTRPGRFDRH-IVVPN-PDVRGRQEILELYL 537 (794)
Q Consensus 489 ~~~~VIVIaATN~p~~L---D~ALlRpGRFdr~-I~V~l-Pd~~eR~eILk~~l 537 (794)
.+.++.||+.|.+-+.+ .+...+ ||... |++++ -...+-..+++..+
T Consensus 168 ~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 35679999999887754 466666 89875 55543 34677777887766
No 331
>PRK03839 putative kinase; Provisional
Probab=97.01 E-value=0.00059 Score=68.22 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
-|+|.|+||+||||+++.+|..++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987643
No 332
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.00 E-value=0.011 Score=64.30 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=50.0
Q ss_pred CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCC---------C------c
Q 003807 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRP---------G------R 514 (794)
Q Consensus 450 aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRp---------G------R 514 (794)
.+-||||||+|++.+ ..+..+|..+..+-...++++|.+.+. +.+..++... | -
T Consensus 172 ~~iViiIDdLDR~~~----------~~i~~~l~~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~yLeKi 240 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSP----------EEIVELLEAIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGREYLEKI 240 (325)
T ss_pred ceEEEEEcchhcCCc----------HHHHHHHHHHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHHHHHHhh
Confidence 467999999999944 334455555544444567777777763 2222222210 0 3
Q ss_pred cceEEEccCCCHHHHHHHHHHHhcc
Q 003807 515 FDRHIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 515 Fdr~I~V~lPd~~eR~eILk~~l~~ 539 (794)
|+..+.+|.|+..+...++...+..
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 5668889999988888888777544
No 333
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.99 E-value=0.0031 Score=63.51 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
-+|+.|+||+|||++|..++.+.+.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4899999999999999999999888888776544
No 334
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.99 E-value=0.0022 Score=61.05 Aligned_cols=30 Identities=33% Similarity=0.687 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
|.|.|+||||||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 335
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.011 Score=63.05 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=97.7
Q ss_pred CCCCceEEEEcCCC-CcHHHHHHHHHHhcCC---------CEEEEeCcchhhh-hhhhhhHHHHHHHHHHHh----CCCe
Q 003807 388 GKLPKGILLTGAPG-TGKTLLAKAIAGEAGV---------PFFYRAGSEFEEM-FVGVGARRVRSLFQAAKK----KAPC 452 (794)
Q Consensus 388 ~~~PkgVLL~GPPG-TGKT~LArAIA~eag~---------pfi~is~se~~e~-~vG~~~~~vr~lF~~Ar~----~aP~ 452 (794)
.++....||.|..+ +||..++..++....+ .++.+....-... -..-+...+|++-+.+.. +...
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~K 91 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYK 91 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcE
Confidence 44566899999998 9999998888776532 2333322110000 001234567776665542 3456
Q ss_pred EEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHH
Q 003807 453 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEI 532 (794)
Q Consensus 453 ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eI 532 (794)
|++||++|.+. ....|.||..++. +..++++|..|+.++.|.|.+++ |+ ..+.++.|+...-.+.
T Consensus 92 ViII~~ae~mt----------~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 92 VAIIYSAELMN----------LNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEEEechHHhC----------HHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHH
Confidence 99999999994 4788999999995 56677788888889999999987 65 6789999999888888
Q ss_pred HHHHhccCC
Q 003807 533 LELYLQDKP 541 (794)
Q Consensus 533 Lk~~l~~~~ 541 (794)
...++....
T Consensus 157 ~~~~~~p~~ 165 (263)
T PRK06581 157 YSQFIQPIA 165 (263)
T ss_pred HHHhccccc
Confidence 877776543
No 336
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.0045 Score=65.21 Aligned_cols=70 Identities=29% Similarity=0.396 Sum_probs=45.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc--C------CCEEEEeC-cchhhhhhhh-------------hhHHHHHHHHHHHhCC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA--G------VPFFYRAG-SEFEEMFVGV-------------GARRVRSLFQAAKKKA 450 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea--g------~pfi~is~-se~~e~~vG~-------------~~~~vr~lF~~Ar~~a 450 (794)
+.|+.||||||||++.|-+|+-+ | ..+..++- +++.....|. ..-+-..+....+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 68999999999999999998854 2 22333432 2222111111 1122345666778899
Q ss_pred CeEEEEcCcccc
Q 003807 451 PCIIFIDEIDAV 462 (794)
Q Consensus 451 P~ILfIDEIDaL 462 (794)
|.|+++|||...
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999998654
No 337
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.97 E-value=0.00092 Score=67.64 Aligned_cols=69 Identities=26% Similarity=0.421 Sum_probs=43.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCc-chh-------hh------hhhhhhHHHHHHHHHHHhCCCeEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGS-EFE-------EM------FVGVGARRVRSLFQAAKKKAPCIIF 455 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~s-e~~-------e~------~vG~~~~~vr~lF~~Ar~~aP~ILf 455 (794)
..++|.||+|+|||++++++++... ...+.+... ++. .. ..+.....+.+++..+.+..|.+++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 4799999999999999999998763 122222111 110 00 0011223456677777778899999
Q ss_pred EcCcc
Q 003807 456 IDEID 460 (794)
Q Consensus 456 IDEID 460 (794)
++|+-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99973
No 338
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.97 E-value=0.0087 Score=61.74 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
|.-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 456899999999999999999999987653
No 339
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.96 E-value=0.0049 Score=65.85 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGV 417 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~ 417 (794)
-++|.||+|+|||+|++.+++....
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 5999999999999999999987754
No 340
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.93 E-value=0.0048 Score=63.48 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=56.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhh-------hh---hh----------hhhHHHHHHHHHHH
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE-------MF---VG----------VGARRVRSLFQAAK 447 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e-------~~---vG----------~~~~~vr~lF~~Ar 447 (794)
|+-++|+||+|+|||+.+-.+|..+ +..+..+++..+.- .| .| ......++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6779999999999999887777654 44444444433311 01 11 11233445566665
Q ss_pred hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCC
Q 003807 448 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD 506 (794)
Q Consensus 448 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD 506 (794)
...-.+|+||-..... .....+.++-..++...+..-++|+.++-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~~--------~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP--------RDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSS--------THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcch--------hhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 5555799988753331 12233333333333333344456666665555444
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.93 E-value=0.0087 Score=68.84 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcch
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~ 427 (794)
..|..++|+|++|+|||+++..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 357889999999999999999998766 566666666544
No 342
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.92 E-value=0.00081 Score=67.04 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
|+++||||+|||++|+.+|.+.|++. ++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998654 45555543
No 343
>PRK00625 shikimate kinase; Provisional
Probab=96.91 E-value=0.0009 Score=67.55 Aligned_cols=31 Identities=42% Similarity=0.626 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998764
No 344
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.90 E-value=0.0058 Score=65.35 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=28.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
|.+....++++||||||||+++-.+|.+. |-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 33444568999999999999999886643 5677777654
No 345
>PRK13695 putative NTPase; Provisional
Probab=96.89 E-value=0.0066 Score=60.50 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-++|+|+||+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988765
No 346
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.013 Score=66.56 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh----hh---h---------hhhhhHHHHHHHHHHHh-C
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE----EM---F---------VGVGARRVRSLFQAAKK-K 449 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~----e~---~---------vG~~~~~vr~lF~~Ar~-~ 449 (794)
.|+-++|.||+|+||||++..||..+ |..+..+++..+. +. | +......+.+.+..++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 35789999999999999999999866 4455555554331 11 1 11233445555555543 2
Q ss_pred CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 450 aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
...+||||-...... ....+..+...++...+...++|+.+|.
T Consensus 320 ~~DvVLIDTaGRs~k--------d~~lm~EL~~~lk~~~PdevlLVLsATt 362 (436)
T PRK11889 320 RVDYILIDTAGKNYR--------ASETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred CCCEEEEeCccccCc--------CHHHHHHHHHHHhhcCCCeEEEEECCcc
Confidence 346888887544321 2344555555554333333345554443
No 347
>PF14516 AAA_35: AAA-like domain
Probab=96.89 E-value=0.012 Score=65.11 Aligned_cols=139 Identities=20% Similarity=0.220 Sum_probs=76.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-------hh-----------hh-------------hhHH
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------FV-----------GV-------------GARR 438 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~-------~v-----------G~-------------~~~~ 438 (794)
-+.|.||..+|||++...+...+ |...+++++..+... +. +. ....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 58999999999999998887655 777888877654221 00 00 1112
Q ss_pred HHHHHHHH---HhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc----CCc--EEEEEEcCCCCCCChhh
Q 003807 439 VRSLFQAA---KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ----NEG--IILMAATNLPDILDPAL 509 (794)
Q Consensus 439 vr~lF~~A---r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~----~~~--VIVIaATN~p~~LD~AL 509 (794)
....|+.. ....|-||+|||||.+..... .....+ .+|+.+-.-.. ... ++++++|. +......-
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~----~~~dF~-~~LR~~~~~~~~~~~~~~L~li~~~~t~-~~~~~~~~ 186 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ----IADDFF-GLLRSWYEQRKNNPIWQKLRLILAGSTE-DYIILDIN 186 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccCcc----hHHHHH-HHHHHHHHhcccCcccceEEEEEecCcc-cccccCCC
Confidence 23334331 224688999999999965311 112222 22222211111 112 33333322 22221122
Q ss_pred cCCCccceEEEccCCCHHHHHHHHHHHh
Q 003807 510 TRPGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 510 lRpGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
.+|--+...+.++.-+.++...+++.|-
T Consensus 187 ~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 187 QSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred CCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 3444455567778788888888887763
No 348
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.87 E-value=0.0068 Score=63.03 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ 413 (794)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 46799999999999999999983
No 349
>PRK13948 shikimate kinase; Provisional
Probab=96.86 E-value=0.0021 Score=65.52 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=34.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhh
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 433 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG 433 (794)
+.|..|+|.|.+|+|||++++.+|..++.+|+-. ..+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~--D~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDT--DRYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEC--CHHHHHHHh
Confidence 4567899999999999999999999999999844 344444444
No 350
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.85 E-value=0.0023 Score=70.98 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=45.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEe-Ccchh--------hhh-----hhhhhHHHHHHHHHHHhCCCeEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRA-GSEFE--------EMF-----VGVGARRVRSLFQAAKKKAPCIIF 455 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~--pfi~is-~se~~--------e~~-----vG~~~~~vr~lF~~Ar~~aP~ILf 455 (794)
++++++|++|+|||++++++.....- .++.+. ..++. ..+ .|...-...++++.+.+..|+.|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 57999999999999999999987742 233221 11110 000 111223456788888888999999
Q ss_pred EcCcc
Q 003807 456 IDEID 460 (794)
Q Consensus 456 IDEID 460 (794)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99974
No 351
>PRK13946 shikimate kinase; Provisional
Probab=96.85 E-value=0.003 Score=63.83 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
.++.|+|.|+||+|||++++.+|..+|.+|+-.+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3467999999999999999999999999988654
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.85 E-value=0.005 Score=62.38 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||.+++....
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~ 45 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYAS 45 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcC
Confidence 358899999999999999997543
No 353
>PLN02200 adenylate kinase family protein
Probab=96.84 E-value=0.0015 Score=68.98 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=33.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
+.+.|.-+++.||||+|||++|+.+|.+.|++ +++.+++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34566779999999999999999999999865 456666643
No 354
>PRK14532 adenylate kinase; Provisional
Probab=96.84 E-value=0.0011 Score=66.78 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~ 430 (794)
.++|.||||+|||++|+.+|...|++++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45555443
No 355
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.83 E-value=0.0087 Score=62.05 Aligned_cols=38 Identities=34% Similarity=0.452 Sum_probs=28.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeC
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAG 424 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~e---ag~pfi~is~ 424 (794)
|......++++||||+|||+++..++.+ .+-+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3444556899999999999999987643 2556666664
No 356
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.82 E-value=0.0072 Score=63.44 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 003807 394 ILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~e 414 (794)
-+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998763
No 357
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0035 Score=65.03 Aligned_cols=23 Identities=57% Similarity=0.784 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-++|+|+||+|||++|+-+|+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 37899999999999999999987
No 358
>PRK13949 shikimate kinase; Provisional
Probab=96.82 E-value=0.0011 Score=66.41 Aligned_cols=31 Identities=45% Similarity=0.618 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
.|+|+|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6999999999999999999999999988754
No 359
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.81 E-value=0.0099 Score=61.58 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=29.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
.+...-+++.|+||+|||+++..++.+. |.+.++++..+
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3344568999999999999999887543 77777777644
No 360
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.80 E-value=0.0029 Score=70.42 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=44.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC----CEEEEeC-cchh---------hhhhhhhhHHHHHHHHHHHhCCCeEEEEc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAG-SEFE---------EMFVGVGARRVRSLFQAAKKKAPCIIFID 457 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~----pfi~is~-se~~---------e~~vG~~~~~vr~lF~~Ar~~aP~ILfID 457 (794)
..++++||+|+||||+.+++.+...- .++.+.- .++. ..-+|.......+.++.+-...|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 35899999999999999999886642 2333211 1111 00122222335566677777899999999
Q ss_pred Ccc
Q 003807 458 EID 460 (794)
Q Consensus 458 EID 460 (794)
|+.
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 983
No 361
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.79 E-value=0.0042 Score=60.82 Aligned_cols=35 Identities=34% Similarity=0.651 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 428 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~ 428 (794)
++|+|+||+|||++|+.++..+ +.+.+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6899999999999999999988 6677777665443
No 362
>PRK14531 adenylate kinase; Provisional
Probab=96.79 E-value=0.0014 Score=66.16 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
+-++++||||+|||++++.+|...|.+++. ..++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999987654 44443
No 363
>PRK06217 hypothetical protein; Validated
Probab=96.79 E-value=0.0012 Score=66.38 Aligned_cols=31 Identities=35% Similarity=0.552 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
.|+|.|+||+|||++|++++..+|.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 364
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.78 E-value=0.0051 Score=61.63 Aligned_cols=73 Identities=27% Similarity=0.381 Sum_probs=41.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-------------CCCEEEEeCcchhhh-------------------hhh-------
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA-------------GVPFFYRAGSEFEEM-------------------FVG------- 433 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea-------------g~pfi~is~se~~e~-------------------~vG------- 433 (794)
-++|+||||+|||+++-.++... +.++++++...-... +..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 38899999999999999887644 236677765432110 000
Q ss_pred ----------hhhHHHHHHHHHHHh-CCCeEEEEcCccccccc
Q 003807 434 ----------VGARRVRSLFQAAKK-KAPCIIFIDEIDAVGST 465 (794)
Q Consensus 434 ----------~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~ 465 (794)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001223445555565 56899999999999765
No 365
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.78 E-value=0.0082 Score=59.47 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=57.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCcchhh--------hhhh-----hhhHHHHHHHHHHHhCCCeEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEE--------MFVG-----VGARRVRSLFQAAKKKAPCIIF 455 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~--pfi~is~se~~e--------~~vG-----~~~~~vr~lF~~Ar~~aP~ILf 455 (794)
...+.|.||+|+|||+|.+.+++...- --+.+++..... ..++ .+..+.+-.+..|-...|.+++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 346889999999999999999986521 112233222110 0010 0122344456666667899999
Q ss_pred EcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC
Q 003807 456 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (794)
Q Consensus 456 IDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (794)
+||-..-.. ....+.+..++.++. .. +..+|.+|+.++
T Consensus 106 lDEP~~~LD------~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 106 LDEPTAALT------PAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred EECCCcCCC------HHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 999643321 123445555555442 22 334555666544
No 366
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.75 E-value=0.0054 Score=62.18 Aligned_cols=69 Identities=25% Similarity=0.161 Sum_probs=41.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCcch----hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEF----EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~--pfi~is~se~----~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 461 (794)
.-+.|.||.|+|||||.+.+++.... --+.+++..+ ....... ..+.+-.+..+-...|.++++||--.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 35889999999999999999986521 1122222111 0000111 22334445555567899999999643
No 367
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.75 E-value=0.0013 Score=65.91 Aligned_cols=33 Identities=36% Similarity=0.621 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
|+|.||||+|||++|+.||...|++++. ..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 7999999999999999999999877654 44544
No 368
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.73 E-value=0.0013 Score=63.41 Aligned_cols=33 Identities=36% Similarity=0.787 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
++|+|+||+|||++|+.++...+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
No 369
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.73 E-value=0.0048 Score=66.28 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=56.0
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeC-cchhhh
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAG-SEFEEM 430 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag---~pfi~is~-se~~e~ 430 (794)
.+++++.-.++..+.|++++. .+ -..+++.||+|+|||++++++..... ..++.+.. .++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~~----------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---KP----------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---cC----------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 467776544555444544332 11 12489999999999999999977663 23444421 111100
Q ss_pred -----hhh-hhhHHHHHHHHHHHhCCCeEEEEcCccc
Q 003807 431 -----FVG-VGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (794)
Q Consensus 431 -----~vG-~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 461 (794)
.+. .......+....+.+..|++|+|+|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 001 1112355667777788999999999843
No 370
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.73 E-value=0.0022 Score=71.01 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=45.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEe-Ccchhhh------hhhhhhHHHHHHHHHHHhCCCeEEEEcCc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA-GSEFEEM------FVGVGARRVRSLFQAAKKKAPCIIFIDEI 459 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is-~se~~e~------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEI 459 (794)
+++|++|++|+|||++++++.... +..++.+. ..++.-. +.....-...++++.+-+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 479999999999999999999875 22333332 1121100 01111234667778888889999999997
Q ss_pred c
Q 003807 460 D 460 (794)
Q Consensus 460 D 460 (794)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 3
No 371
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.73 E-value=0.0055 Score=61.69 Aligned_cols=70 Identities=26% Similarity=0.314 Sum_probs=45.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh-h----------------hhhhhHHHHHHHHHHHhCCCeEEEE
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-F----------------VGVGARRVRSLFQAAKKKAPCIIFI 456 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~-~----------------vG~~~~~vr~lF~~Ar~~aP~ILfI 456 (794)
+|++|+||+|||++|..++.+.+.+.+++....-.+. + ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887778887765432111 0 0111123333332221 4669999
Q ss_pred cCccccccc
Q 003807 457 DEIDAVGST 465 (794)
Q Consensus 457 DEIDaL~~~ 465 (794)
|-+..+..+
T Consensus 80 Dclt~~~~n 88 (169)
T cd00544 80 DCLTLWVTN 88 (169)
T ss_pred EcHhHHHHH
Confidence 998877543
No 372
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0013 Score=65.01 Aligned_cols=31 Identities=42% Similarity=0.751 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
+||++|-||||||+++..+|...+.+++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 7999999999999999999999999888754
No 373
>PRK08233 hypothetical protein; Provisional
Probab=96.70 E-value=0.0067 Score=60.02 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC-CCEEEEeCc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAGS 425 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag-~pfi~is~s 425 (794)
.-|.+.|+||+||||+|+.|+..++ .+++..+..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 3578899999999999999999985 455555443
No 374
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.67 E-value=0.0035 Score=68.72 Aligned_cols=70 Identities=24% Similarity=0.407 Sum_probs=45.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEe-Ccchh-------hhh-----hhhhhHHHHHHHHHHHhCCCeEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRA-GSEFE-------EMF-----VGVGARRVRSLFQAAKKKAPCIIF 455 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~--pfi~is-~se~~-------e~~-----vG~~~~~vr~lF~~Ar~~aP~ILf 455 (794)
..++++.||+|+|||++++++++...- ..+.+. ..++. ... .+...-.+.+++..+....|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 358999999999999999999987632 222221 11110 000 011123456777888888999999
Q ss_pred EcCcc
Q 003807 456 IDEID 460 (794)
Q Consensus 456 IDEID 460 (794)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99975
No 375
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0046 Score=62.52 Aligned_cols=31 Identities=32% Similarity=0.575 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
+.+.|.|++|+||||+.+++|+.++.+|+-.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 4699999999999999999999999999854
No 376
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.66 E-value=0.0024 Score=70.54 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=45.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEe-Ccchhh------hhhhhhhHHHHHHHHHHHhCCCeEEEEcCc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA-GSEFEE------MFVGVGARRVRSLFQAAKKKAPCIIFIDEI 459 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is-~se~~e------~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEI 459 (794)
++++++|++|+|||+++++++++. ...++.+. ..++.- .+.....-...++++.+-+..|+.|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 579999999999999999999863 12233221 111110 011111234678888888899999999997
Q ss_pred c
Q 003807 460 D 460 (794)
Q Consensus 460 D 460 (794)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 377
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.019 Score=65.66 Aligned_cols=112 Identities=15% Similarity=0.269 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchhhh-------h---hhh---hhHHHHHHHHHHHhCCCe
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM-------F---VGV---GARRVRSLFQAAKKKAPC 452 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~e~-------~---vG~---~~~~vr~lF~~Ar~~aP~ 452 (794)
.+.-++|.||+|+||||++..+|... |..+..+++..+... | .|. ....+..+...+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 34568899999999999999998754 444555555443211 1 111 112233444444444557
Q ss_pred EEEEcCcccccccccccccchHHHHHHHHHhhhcc---ccCCcEEEEEEcCCCCCCChhh
Q 003807 453 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---EQNEGIILMAATNLPDILDPAL 509 (794)
Q Consensus 453 ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~---~~~~~VIVIaATN~p~~LD~AL 509 (794)
+|+||=..... .....+..|...++.. .+...++|+.+|...+.+...+
T Consensus 302 ~VLIDTaGr~~--------rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 302 LILIDTAGYSH--------RNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEEEeCCCCCc--------cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 88887532221 1123344444433322 1234567777777665554444
No 378
>PRK04328 hypothetical protein; Provisional
Probab=96.65 E-value=0.013 Score=62.22 Aligned_cols=39 Identities=33% Similarity=0.491 Sum_probs=28.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGS 425 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~e---ag~pfi~is~s 425 (794)
|.+....+|++||||||||+|+..++.+ .|-+.++++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 3444456899999999999998877543 36677777653
No 379
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.65 E-value=0.0064 Score=67.71 Aligned_cols=23 Identities=57% Similarity=0.741 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 380
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.64 E-value=0.0015 Score=64.01 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=26.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
++|.||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987665 44444
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.63 E-value=0.021 Score=56.62 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcch
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~ 427 (794)
-++++||||+|||++++.+|..+ +..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 37899999999999999998765 666777776543
No 382
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.62 E-value=0.012 Score=58.74 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
....+.|.||+|+|||+|++.+++..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468999999999999999999965
No 383
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.62 E-value=0.011 Score=59.92 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 003807 394 ILLTGAPGTGKTLLAKAIA 412 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA 412 (794)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 384
>PRK14530 adenylate kinase; Provisional
Probab=96.61 E-value=0.002 Score=66.61 Aligned_cols=30 Identities=43% Similarity=0.593 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.|+|.||||+||||+++.||...+.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877643
No 385
>PHA02774 E1; Provisional
Probab=96.61 E-value=0.0084 Score=70.59 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE-EEeC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFF-YRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi-~is~ 424 (794)
++++|+||||||||++|-+|++.++...+ ++|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 58999999999999999999999864443 3553
No 386
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.60 E-value=0.0082 Score=65.94 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=61.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcch-h-hhh------hhhhh--------------
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-EMF------VGVGA-------------- 436 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se~-~-e~~------vG~~~-------------- 436 (794)
.+...-++|+||||+|||+++-.+|..+ +...++++..+- . +.+ .|...
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCCC
Confidence 4444568899999999999999998653 346777776551 1 000 00000
Q ss_pred -----HHHHHHHHHHHh-CCCeEEEEcCcccccccccccc-c--chHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 437 -----RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWE-G--HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 437 -----~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~-~--~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
..+..+...... ..+.+|+||-|-++....-... . ..++.+.+++..|..+-...++.+|.++.
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011122222233 4567999999998754211111 1 11333555555555444455666665543
No 387
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.60 E-value=0.0057 Score=67.09 Aligned_cols=33 Identities=36% Similarity=0.602 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.++..|.|+|+||+|||++++.+|..+|++|+.
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 445689999999999999999999999999994
No 388
>PRK06547 hypothetical protein; Provisional
Probab=96.60 E-value=0.0022 Score=64.61 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=29.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
..+.-|++.|++|+|||++|+.++...+++++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 3456789999999999999999999999887754
No 389
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.0025 Score=64.74 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
.|+|.||||+||||+|+.||...+ +.+++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 489999999999999999999955 455554443
No 390
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.58 E-value=0.0036 Score=69.86 Aligned_cols=70 Identities=26% Similarity=0.424 Sum_probs=45.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeC-cchh-------hh-h----hhhhhHHHHHHHHHHHhCCCeEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAG-SEFE-------EM-F----VGVGARRVRSLFQAAKKKAPCIIF 455 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~--pfi~is~-se~~-------e~-~----vG~~~~~vr~lF~~Ar~~aP~ILf 455 (794)
.+++|+.||+|+|||++++++++.... .++.+.- .++. .. + .+...-...+++..+.+..|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 358999999999999999999987642 2222211 1110 00 0 111223456777888888899999
Q ss_pred EcCcc
Q 003807 456 IDEID 460 (794)
Q Consensus 456 IDEID 460 (794)
+.|+-
T Consensus 242 vGEiR 246 (344)
T PRK13851 242 LGEMR 246 (344)
T ss_pred EEeeC
Confidence 88863
No 391
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.57 E-value=0.0025 Score=67.23 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.|.-++|.||||+||||+|+.+|...|++++.+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 344599999999999999999999999877764
No 392
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.57 E-value=0.0024 Score=63.14 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
+.++|+|+||+|||++++.+|..+|.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3689999999999999999999999998754
No 393
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.57 E-value=0.0051 Score=68.52 Aligned_cols=83 Identities=24% Similarity=0.415 Sum_probs=54.4
Q ss_pred Ccc-cccCCHHHHHHHHHHHHHhcCchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHhcC-CCEEEEeCcchhhhhh
Q 003807 356 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGG-KLPKGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAGSEFEEMFV 432 (794)
Q Consensus 356 tFd-DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~-~~PkgVLL~GPPGTGKT~LArAIA~eag-~pfi~is~se~~e~~v 432 (794)
-|+ ++.|.+++.+++ |++++.... |. .--+-++|.||+|+|||+|++.+-+-+. .+++.+..+-..+.-.
T Consensus 58 ~f~~~~~G~~~~i~~l---V~~fk~AA~----g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL 130 (358)
T PF08298_consen 58 FFEDEFYGMEETIERL---VNYFKSAAQ----GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPL 130 (358)
T ss_pred CccccccCcHHHHHHH---HHHHHHHHh----ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChh
Confidence 366 899999985554 666655433 22 2234688999999999999999987663 3666665544443334
Q ss_pred hhhhHHHHHHHHH
Q 003807 433 GVGARRVRSLFQA 445 (794)
Q Consensus 433 G~~~~~vr~lF~~ 445 (794)
+.-.+.+|+.|..
T Consensus 131 ~L~P~~~r~~~~~ 143 (358)
T PF08298_consen 131 HLFPKELRREFED 143 (358)
T ss_pred hhCCHhHHHHHHH
Confidence 4445666666544
No 394
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.57 E-value=0.009 Score=65.21 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=29.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE 426 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se 426 (794)
.+...-++++||||+|||+++-.+|..+ +...++++..+
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 3444557899999999999999998663 23678887655
No 395
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.56 E-value=0.018 Score=60.15 Aligned_cols=121 Identities=24% Similarity=0.361 Sum_probs=74.4
Q ss_pred hhhcCCCCCce--EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc----hhhh-----------------------
Q 003807 383 FTRLGGKLPKG--ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE----FEEM----------------------- 430 (794)
Q Consensus 383 ~~~lG~~~Pkg--VLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se----~~e~----------------------- 430 (794)
-.++|+-+|.| +|+.|+.|||||.|.+.++--. +....+++... |...
T Consensus 18 DkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~ 97 (235)
T COG2874 18 DKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVN 97 (235)
T ss_pred HhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEec
Confidence 34556656544 7888999999999999987632 33333333211 0000
Q ss_pred ------hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 431 ------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 431 ------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
-.....+.+..+.+..+.....+++||-++.+.... ..+.+++++..+..+....++|++ |-+|..
T Consensus 98 ~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d~gKvIil--Tvhp~~ 169 (235)
T COG2874 98 LEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSDLGKVIIL--TVHPSA 169 (235)
T ss_pred ccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------cHHHHHHHHHHHHHHHhCCCEEEE--EeChhh
Confidence 011122344555555566666899999999886532 345666777777766666666654 335788
Q ss_pred CChhhcC
Q 003807 505 LDPALTR 511 (794)
Q Consensus 505 LD~ALlR 511 (794)
++.+.+-
T Consensus 170 l~e~~~~ 176 (235)
T COG2874 170 LDEDVLT 176 (235)
T ss_pred cCHHHHH
Confidence 8887764
No 396
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.55 E-value=0.0065 Score=65.53 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~ 430 (794)
++-+++.|+||||||++|+.++.... .+..++...+...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 45689999999999999999999983 3455555555433
No 397
>PLN02674 adenylate kinase
Probab=96.55 E-value=0.0043 Score=66.15 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.+..++|.||||+||||+|+.+|...|++.+ +..++.
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~Gdll 66 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDML 66 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHH
Confidence 3457999999999999999999999986655 445554
No 398
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0058 Score=59.75 Aligned_cols=103 Identities=24% Similarity=0.377 Sum_probs=56.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCC--EEEEeCcchhh-------h---h---hhhhhHHHHHHHHHHHhCCCeEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGSEFEE-------M---F---VGVGARRVRSLFQAAKKKAPCIIFI 456 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~p--fi~is~se~~e-------~---~---vG~~~~~vr~lF~~Ar~~aP~ILfI 456 (794)
..+.|.||+|+|||+|.+++++..... -+++++..... . | ...+ .+.+-.+..+-...|.++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEEEE
Confidence 468899999999999999999976421 22333322111 0 0 1112 22333345555567899999
Q ss_pred cCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 457 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 457 DEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
||...=... .....+..++..+. .. +..+|.+|+..+.+
T Consensus 105 DEp~~~lD~------~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 143 (157)
T cd00267 105 DEPTSGLDP------ASRERLLELLRELA---EE-GRTVIIVTHDPELA 143 (157)
T ss_pred eCCCcCCCH------HHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 997643221 22344444444432 22 23455566655443
No 399
>PRK13764 ATPase; Provisional
Probab=96.54 E-value=0.0036 Score=74.35 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=41.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEe-Ccch-----hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRA-GSEF-----EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag---~pfi~is-~se~-----~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 461 (794)
.+++|++||||+||||++++++..+. ..+.++. ..++ ...|... ......+.+.+-...|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 35899999999999999999998774 2222321 1111 1111100 01122333333457799999999853
No 400
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.52 E-value=0.004 Score=64.97 Aligned_cols=134 Identities=22% Similarity=0.259 Sum_probs=63.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh-hhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccccc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 471 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e-~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~ 471 (794)
-++|+||+|||||.+|-++|++.|.|++..+.-.... ..+|.+.....++ +..+ =+|+||-..-- +.-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el-----~~~~-RiyL~~r~l~~-----G~i 71 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSEL-----KGTR-RIYLDDRPLSD-----GII 71 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGG-----TT-E-EEES----GGG------S-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHH-----cccc-eeeeccccccC-----CCc
Confidence 4789999999999999999999999999987655432 2333222111111 1111 37777643221 112
Q ss_pred chHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcC---CCccce-EEEccCCCHHHHHHHHHHHhcc
Q 003807 472 HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR---PGRFDR-HIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 472 ~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlR---pGRFdr-~I~V~lPd~~eR~eILk~~l~~ 539 (794)
...+....|+..++......++|+=|-+. ..|..-... .-.|.. +..++.||.+.-..-.+...++
T Consensus 72 ~a~ea~~~Li~~v~~~~~~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 72 NAEEAHERLISEVNSYSAHGGLILEGGSI--SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp -HHHHHHHHHHHHHTTTTSSEEEEEE--H--HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccCceEEeCchH--HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 33566677888888887755666555433 111111111 012333 4456788877655544444433
No 401
>PRK06696 uridine kinase; Validated
Probab=96.52 E-value=0.0055 Score=63.81 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=33.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 428 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~ 428 (794)
.|.-|.+.|++|+||||+|+.|+..+ |.+++.++..+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 45678999999999999999999988 7788888877774
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=96.52 E-value=0.036 Score=63.81 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=48.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchhhh----------------hh----hhhhHHHHHHH
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM----------------FV----GVGARRVRSLF 443 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~e~----------------~v----G~~~~~vr~lF 443 (794)
...|.-++++||+|+||||++..+|..+ |..+..+++..+... +. .......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457889999999999999777777643 666777776544221 00 01223334455
Q ss_pred HHHHhCCCeEEEEcCcccc
Q 003807 444 QAAKKKAPCIIFIDEIDAV 462 (794)
Q Consensus 444 ~~Ar~~aP~ILfIDEIDaL 462 (794)
..++.....+|+||=...+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 5666666779998876554
No 403
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.50 E-value=0.0028 Score=63.58 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999876543
No 404
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.48 E-value=0.0027 Score=63.14 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
-+++.||||+||||+++.++.+.|.+.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58899999999999999999999876554
No 405
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.46 E-value=0.013 Score=68.32 Aligned_cols=74 Identities=28% Similarity=0.288 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh------hh----------------------hhHH
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV----------------------GARR 438 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v------G~----------------------~~~~ 438 (794)
....+|+.||||||||+|+-.++.+. |-+.++++..+-.+.+. |. ....
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 33458999999999999999887755 66778887655422211 10 0234
Q ss_pred HHHHHHHHHhCCCeEEEEcCccccc
Q 003807 439 VRSLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 439 vr~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
+..+.+......|.+|+||-+..+.
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 5556666677788999999998874
No 406
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.45 E-value=0.012 Score=63.77 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----C-CCEEEEeCcch
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA----G-VPFFYRAGSEF 427 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea----g-~pfi~is~se~ 427 (794)
.++.++|+||+|+||||++..+|..+ | ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 35679999999999999999998755 3 56666766554
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.45 E-value=0.034 Score=61.47 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
..|.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456778999999999999999998866 4455555544
No 408
>PRK14528 adenylate kinase; Provisional
Probab=96.44 E-value=0.0029 Score=64.17 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.+++.||||+|||++|+.++...|.+++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999887653
No 409
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.43 E-value=0.028 Score=60.85 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
..|+-++|+||+|+|||+++..+|..+ |..+..+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 456788999999999999999888755 55565566543
No 410
>PRK02496 adk adenylate kinase; Provisional
Probab=96.41 E-value=0.0028 Score=63.53 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
-+++.||||+|||++|+.+|...+.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999999876653
No 411
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.41 E-value=0.0057 Score=68.98 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=44.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEeCc-chh-----------hhhhhhhhHHHHHHHHHHHhCCCeEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG-----VPFFYRAGS-EFE-----------EMFVGVGARRVRSLFQAAKKKAPCIIF 455 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag-----~pfi~is~s-e~~-----------e~~vG~~~~~vr~lF~~Ar~~aP~ILf 455 (794)
.+|++||+|+||||+++++.+... ..++.+.-. ++. ..-+|.......+..+.+-+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 234443211 110 011222223455667777778999999
Q ss_pred EcCcc
Q 003807 456 IDEID 460 (794)
Q Consensus 456 IDEID 460 (794)
++|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 412
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.40 E-value=0.0084 Score=59.33 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ 413 (794)
+..+++||.|+|||++.++++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999853
No 413
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.40 E-value=0.016 Score=56.43 Aligned_cols=69 Identities=26% Similarity=0.348 Sum_probs=40.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCcc---hhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSE---FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~--pfi~is~se---~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 461 (794)
...+.|.||+|+|||+|++++++.... --+.+++.. +... ...+ .+.+-.+..+-...|.++++||-..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G-~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGG-EKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHH-HHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 346889999999999999999996521 011111110 0000 1111 2233334555557889999999654
No 414
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.39 E-value=0.02 Score=55.55 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHhcC----CCEEEEeC
Q 003807 392 KGILLTGAPGTGKTL-LAKAIAGEAG----VPFFYRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~-LArAIA~eag----~pfi~is~ 424 (794)
+.+++.||+|||||. ++..+..... ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 479999999999999 5555544432 33555544
No 415
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.39 E-value=0.014 Score=64.37 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=59.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcc-hh-hhh------hhhh---------------h--
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FE-EMF------VGVG---------------A-- 436 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se-~~-e~~------vG~~---------------~-- 436 (794)
..-+.|+||||+|||.|+..+|-.. +...+|++..+ |. +.. .|.. .
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~ 175 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEH 175 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHH
Confidence 3457899999999999998877422 45677777554 11 100 0100 1
Q ss_pred --HHHHHHHHHHHhCCCeEEEEcCccccccccccccc---chHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 437 --RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 437 --~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~---~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
..+..+-.......+.+|+||-|-++....-...+ ..++.+++++..|..+-...++.|+.+
T Consensus 176 ~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 176 QMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred HHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 11122222233456789999999988543111111 112345666666665555556655554
No 416
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.0089 Score=59.52 Aligned_cols=37 Identities=35% Similarity=0.452 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC---CEEEEeCcc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAGSE 426 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~---pfi~is~se 426 (794)
.|.-++|.|+||+|||++|+.++..+.. ..+.+++..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 4567999999999999999999998852 344555433
No 417
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.007 Score=60.22 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...+.|.||+|+|||+|.+.+++..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999999965
No 418
>PTZ00202 tuzin; Provisional
Probab=96.38 E-value=0.024 Score=65.02 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=48.8
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
.-.+.+|.++...+|..++..+ ....|+-+.|+||+|+|||++++.+...++.+.++++...
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 3557799999988888777521 2234567889999999999999999999998877777653
No 419
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.37 E-value=0.0088 Score=51.09 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=23.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc-CCCEEEEe
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA-GVPFFYRA 423 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea-g~pfi~is 423 (794)
+.+.|+||+|||+++++++..+ +..+..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999985 23444443
No 420
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.37 E-value=0.011 Score=68.84 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=56.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeC-cchh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAG-SEFE 428 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pkg-VLL~GPPGTGKT~LArAIA~eag---~pfi~is~-se~~ 428 (794)
..+|+++.-.++..+.++.++. .|.| ++++||+|+|||++.+++..+.+ ..++++.. -++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 4467777656666556655443 2334 78999999999999998877664 33444422 1111
Q ss_pred hh-----hhhh-hhHHHHHHHHHHHhCCCeEEEEcCcc
Q 003807 429 EM-----FVGV-GARRVRSLFQAAKKKAPCIIFIDEID 460 (794)
Q Consensus 429 e~-----~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEID 460 (794)
-. .++. .........+.+-+..|+||+|.||-
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 0110 01234455566667889999999974
No 421
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.35 E-value=0.015 Score=63.38 Aligned_cols=93 Identities=22% Similarity=0.371 Sum_probs=59.1
Q ss_pred Cce-EEEEcCCCCcHHHHHHHHHHhcCC----CEEEE---------eCcch-hhhhhhhhhHHHHHHHHHHHhCCCeEEE
Q 003807 391 PKG-ILLTGAPGTGKTLLAKAIAGEAGV----PFFYR---------AGSEF-EEMFVGVGARRVRSLFQAAKKKAPCIIF 455 (794)
Q Consensus 391 Pkg-VLL~GPPGTGKT~LArAIA~eag~----pfi~i---------s~se~-~e~~vG~~~~~vr~lF~~Ar~~aP~ILf 455 (794)
|+| ||++||.|+|||+..-++-+..|. .++.+ |-..+ ...-+|.........++.|-+..|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 345 677899999999988888887753 22222 11111 1223455455556666777778899999
Q ss_pred EcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 456 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 456 IDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
+-|+-. ..++..-|..- ..|-+|++|-.
T Consensus 204 vGEmRD------------~ETi~~ALtAA-----ETGHLV~~TLH 231 (353)
T COG2805 204 VGEMRD------------LETIRLALTAA-----ETGHLVFGTLH 231 (353)
T ss_pred Eecccc------------HHHHHHHHHHH-----hcCCEEEEecc
Confidence 988743 35666666543 34667787644
No 422
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.35 E-value=0.024 Score=61.22 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=61.7
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHH
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR 438 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~ 438 (794)
+++=.+++.+.+..+...|..|.. ++||.|.+|+||++++|..|.-++..++.+....-.+ ..+-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~G----------h~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPRG----------HALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTTE----------EEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCCC----------CeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 556678888888888887877643 7999999999999999999999999998876543211 1222355
Q ss_pred HHHHHHHHH-hCCCeEEEEcCccc
Q 003807 439 VRSLFQAAK-KKAPCIIFIDEIDA 461 (794)
Q Consensus 439 vr~lF~~Ar-~~aP~ILfIDEIDa 461 (794)
++.++..|. ++.|.+++|+|-+-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi 100 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQI 100 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCS
T ss_pred HHHHHHHHhccCCCeEEEecCccc
Confidence 666666665 45688888887543
No 423
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0031 Score=63.14 Aligned_cols=28 Identities=36% Similarity=0.686 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|-+.|||||||||+|+-+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999986
No 424
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.35 E-value=0.0033 Score=64.74 Aligned_cols=28 Identities=43% Similarity=0.718 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|+|.||||+|||++|+.+|...|++.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999977665
No 425
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.34 E-value=0.025 Score=65.94 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEEeCcc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGSE 426 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~e----ag~pfi~is~se 426 (794)
|....+.+|++||||||||+||..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3444567999999999999999988443 267887777543
No 426
>PRK14527 adenylate kinase; Provisional
Probab=96.33 E-value=0.0034 Score=63.62 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.|.-+++.||||+|||++|+.+|.+.+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 45679999999999999999999999876554
No 427
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.32 E-value=0.026 Score=57.25 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.--++|+||+||||++|.|++|.-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3459999999999999999999843
No 428
>PRK13808 adenylate kinase; Provisional
Probab=96.32 E-value=0.016 Score=64.39 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
|+|.||||+|||++++.|+...|++++. ..++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec--ccHHH
Confidence 8999999999999999999999876554 44443
No 429
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.31 E-value=0.022 Score=69.56 Aligned_cols=111 Identities=19% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEEeCcchhh-h---hhh------------hhhHHHHHHHHHHHhC
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAG---EAGVPFFYRAGSEFEE-M---FVG------------VGARRVRSLFQAAKKK 449 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~---eag~pfi~is~se~~e-~---~vG------------~~~~~vr~lF~~Ar~~ 449 (794)
....-++|+||||||||+|+-.++. ..|...++++..+-.. . -.| ..+..+..+-...+..
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~ 137 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSG 137 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcC
Confidence 3335588999999999999976544 3366777776544211 0 000 1112222222223456
Q ss_pred CCeEEEEcCccccccccccc---c-c---chHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 450 APCIIFIDEIDAVGSTRKQW---E-G---HTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 450 aP~ILfIDEIDaL~~~r~~~---~-~---~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
.+.+|+||-|.++..+..-. . . ...+.++++|..|..+-...++.+|.|-
T Consensus 138 ~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 138 ALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred CCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 78999999999987522110 0 0 1133445666666666556677766653
No 430
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.31 E-value=0.01 Score=60.63 Aligned_cols=42 Identities=31% Similarity=0.556 Sum_probs=33.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEeCcchhhh
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAGSEFEEM 430 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea-g~pfi~is~se~~e~ 430 (794)
..|.-+++.|+||+|||+++..+..+. +..++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 567889999999999999999999988 777888998887554
No 431
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.30 E-value=0.0099 Score=65.81 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
+.+.|.|+||||||+|++.+++..+.+++.-.+.++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 4699999999999999999999999998765554443
No 432
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.014 Score=58.18 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..+.|.||+|+|||+|++.+++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999864
No 433
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0069 Score=67.68 Aligned_cols=25 Identities=48% Similarity=0.789 Sum_probs=21.3
Q ss_pred CCCce--EEEEcCCCCcHHHHHHHHHH
Q 003807 389 KLPKG--ILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 389 ~~Pkg--VLL~GPPGTGKT~LArAIA~ 413 (794)
.+..| +-|.||+||||||+.|.||+
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34445 66999999999999999998
No 434
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.28 E-value=0.0038 Score=64.46 Aligned_cols=28 Identities=43% Similarity=0.714 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|+++||||+|||++|+.+|...|++.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 8999999999999999999999976665
No 435
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.26 E-value=0.0033 Score=58.09 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea 415 (794)
|+|.|+|||||||+|+.++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 436
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.26 E-value=0.033 Score=55.49 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||+|+|||+|.+.+++..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 358899999999999999999865
No 437
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.25 E-value=0.031 Score=64.21 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCcch
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEF 427 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~se~ 427 (794)
.+.++|.||+|+||||++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578999999999999888887643 345666666554
No 438
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.25 E-value=0.014 Score=71.26 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=57.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---C--CCEEEEeCcch----hhhhhhhhhHHHHHHHHHHH----------hCCCeE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---G--VPFFYRAGSEF----EEMFVGVGARRVRSLFQAAK----------KKAPCI 453 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g--~pfi~is~se~----~e~~vG~~~~~vr~lF~~Ar----------~~aP~I 453 (794)
-++|+|+||||||++++++...+ + .+++.+....- .....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999996644 4 44444332211 11112323333444443211 123469
Q ss_pred EEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC
Q 003807 454 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (794)
Q Consensus 454 LfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (794)
|+|||+..+. ...+..|+..+ ....+++++|=.+...
T Consensus 420 lIvDEaSMvd----------~~~~~~Ll~~~---~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 420 LIVDESSMMD----------TWLALSLLAAL---PDHARLLLVGDTDQLP 456 (720)
T ss_pred EEEeccccCC----------HHHHHHHHHhC---CCCCEEEEECcccccc
Confidence 9999998873 34556666544 3456788887555433
No 439
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.24 E-value=0.057 Score=62.03 Aligned_cols=74 Identities=22% Similarity=0.196 Sum_probs=46.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh---------------hhh-----hhhHHHHHHHHH
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---------------FVG-----VGARRVRSLFQA 445 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~---------------~vG-----~~~~~vr~lF~~ 445 (794)
..|.-++|+|++|+||||++..+|..+ |..+..+++..+... +.+ ......++.+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346789999999999999999998765 666666666443210 010 111223345555
Q ss_pred HHhCCCeEEEEcCcccc
Q 003807 446 AKKKAPCIIFIDEIDAV 462 (794)
Q Consensus 446 Ar~~aP~ILfIDEIDaL 462 (794)
++.....+||||=...+
T Consensus 178 ~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHhCCCCEEEEECCCCC
Confidence 65555678998876443
No 440
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.21 E-value=0.024 Score=63.35 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcc-hh-----hh--hhhhh---------------h---
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FE-----EM--FVGVG---------------A--- 436 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se-~~-----e~--~vG~~---------------~--- 436 (794)
.-..|+||||||||.|+..+|-.. +...++++... |. .. -.|.. .
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~ 206 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQ 206 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHH
Confidence 446799999999999999886432 24667776644 10 00 00100 0
Q ss_pred -HHHHHHHHHHHhCCCeEEEEcCcccccccccccc---cchHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 437 -RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 437 -~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~---~~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
..+..+-.......+.+|+||-|-.+....-... ...++.+++++..|..+-...++.||.+
T Consensus 207 ~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 207 YNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 1112222223345688999999998754311111 1223446666666655544555555544
No 441
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.20 E-value=0.013 Score=67.71 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=59.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEcCCCCcHHHHHHHHHHhcCCCEEE-EeCcchhhh-
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEAGVPFFY-RAGSEFEEM- 430 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pkg-VLL~GPPGTGKT~LArAIA~eag~pfi~-is~se~~e~- 430 (794)
..+|+++.......+.+.+++. .|.| +|++||.|+|||+...++..+++-+... ++..+-++.
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~ 299 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ 299 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee
Confidence 4568888777777666655554 3445 5677999999999999999988655432 222222111
Q ss_pred -------hhhh-hhHHHHHHHHHHHhCCCeEEEEcCcccc
Q 003807 431 -------FVGV-GARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (794)
Q Consensus 431 -------~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (794)
-+.. ..-.....++..-+..|+||+|.||-..
T Consensus 300 ~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 300 LPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred cCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 0100 0011234455556688999999998543
No 442
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.20 E-value=0.023 Score=57.01 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||+|+|||+|++.+++..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999865
No 443
>PRK04182 cytidylate kinase; Provisional
Probab=96.18 E-value=0.0048 Score=60.81 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
-|+|.|+||+|||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998775
No 444
>PRK01184 hypothetical protein; Provisional
Probab=96.18 E-value=0.0046 Score=61.97 Aligned_cols=29 Identities=41% Similarity=0.618 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
-|+|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999888654
No 445
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.14 E-value=0.013 Score=73.78 Aligned_cols=142 Identities=23% Similarity=0.263 Sum_probs=81.0
Q ss_pred CCceEEEEcCCCCcHHHH-HHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHH---h-----C------CCeEE
Q 003807 390 LPKGILLTGAPGTGKTLL-AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAK---K-----K------APCII 454 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~L-ArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar---~-----~------aP~IL 454 (794)
.-++++++||||+|||+| .-++-.+.-..++++|-+.... ++..++-+=+... . . .--||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 346899999999999985 5677777777787777654321 1111211111110 0 0 01399
Q ss_pred EEcCcccccccccccccchHHHHHHHHHhhhccc--------cCCcEEEEEEcCCCCCCChhhcCCCccce---EEEccC
Q 003807 455 FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------QNEGIILMAATNLPDILDPALTRPGRFDR---HIVVPN 523 (794)
Q Consensus 455 fIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--------~~~~VIVIaATN~p~~LD~ALlRpGRFdr---~I~V~l 523 (794)
|.|||. +...+.-.....--.+.+|+ +-+||. .-.++++.|++|.+.+... .--+.||-+ .+.+..
T Consensus 1568 FcDeIn-Lp~~~~y~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v~vf~~y 1644 (3164)
T COG5245 1568 FCDEIN-LPYGFEYYPPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPVFVFCCY 1644 (3164)
T ss_pred EeeccC-CccccccCCCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcCceEEEecC
Confidence 999998 54332211111101111222 223442 2357999999998865430 111223333 578899
Q ss_pred CCHHHHHHHHHHHhcc
Q 003807 524 PDVRGRQEILELYLQD 539 (794)
Q Consensus 524 Pd~~eR~eILk~~l~~ 539 (794)
|.......|.+.++.+
T Consensus 1645 pe~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1645 PELASLRNIYEAVLMG 1660 (3164)
T ss_pred cchhhHHHHHHHHHHH
Confidence 9999999998877754
No 446
>PTZ00035 Rad51 protein; Provisional
Probab=96.14 E-value=0.03 Score=62.40 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=59.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcch-h-----hhh--hhhh----------------h
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-----EMF--VGVG----------------A 436 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se~-~-----e~~--vG~~----------------~ 436 (794)
...-+.|+||||+|||+|+..++... +...++++...- . ... .+.. .
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 33447799999999999999997543 334566665431 1 000 0000 0
Q ss_pred ---HHHHHHHHHHHhCCCeEEEEcCccccccccccccc---chHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 437 ---RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 437 ---~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~---~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
..+..+........+.+|+||-|-++....-...+ ..++.+.+++..|..+....++.|+.+
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 11112222223456789999999987543111111 123446666666655544556666544
No 447
>PF13245 AAA_19: Part of AAA domain
Probab=96.14 E-value=0.0084 Score=52.61 Aligned_cols=32 Identities=41% Similarity=0.474 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHH-HHHHHHHHhc------CCCEEEEeC
Q 003807 393 GILLTGAPGTGKT-LLAKAIAGEA------GVPFFYRAG 424 (794)
Q Consensus 393 gVLL~GPPGTGKT-~LArAIA~ea------g~pfi~is~ 424 (794)
-+++.|||||||| ++++.++... +..++.++.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 3556999999999 5666666654 444555543
No 448
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.13 E-value=0.0053 Score=63.81 Aligned_cols=23 Identities=48% Similarity=0.590 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.+.||.|||||+||-+.|-+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999998755
No 449
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.13 E-value=0.027 Score=60.95 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=37.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh-h--hh-hhhhhHHHHHHHHHHHh---CCCeEEEEcCcccc
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-E--MF-VGVGARRVRSLFQAAKK---KAPCIIFIDEIDAV 462 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~-e--~~-vG~~~~~vr~lF~~Ar~---~aP~ILfIDEIDaL 462 (794)
|+|+|-||+|||++|+.|+..+ +..+..++-..+. . .| -...++..|..+..+-. ....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999998864 5677777754443 1 12 12234445544443321 23479999998776
No 450
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.12 E-value=0.024 Score=56.41 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcch
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~ 427 (794)
+.-+.|.|+||+|||++|+.+++.+ +..+..+++..+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 3468899999999999999999877 445666666544
No 451
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.12 E-value=0.017 Score=68.36 Aligned_cols=28 Identities=39% Similarity=0.542 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.++...+|+.||+|||||+|.||||+-.
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444579999999999999999999844
No 452
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.12 E-value=0.039 Score=58.28 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 003807 393 GILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ 413 (794)
-+-|.||+|+|||||...+++
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999987
No 453
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.12 E-value=0.025 Score=57.87 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ 413 (794)
.-++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3599999999999999999983
No 454
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.0041 Score=62.81 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
-++++|.||||||++++.++ ++|.++++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998888754
No 455
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.09 E-value=0.025 Score=57.11 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhh
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~v 432 (794)
|.|+|.+|||||++++.++...+.+++ ++.++.....
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~ 38 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVV 38 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHH
Confidence 679999999999999999998667765 5555544433
No 456
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.08 E-value=0.063 Score=66.34 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
+-++++||+|.|||+++...+...+ ++..++.
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 3589999999999999999887766 6666554
No 457
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.08 E-value=0.0057 Score=59.86 Aligned_cols=28 Identities=36% Similarity=0.647 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|.|+|++|+|||++|+.++..+|.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999998765
No 458
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.08 E-value=0.077 Score=56.60 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=73.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCcchhhh---h-----hhh---------hhHH----HHHHHHHH
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEEM---F-----VGV---------GARR----VRSLFQAA 446 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~--pfi~is~se~~e~---~-----vG~---------~~~~----vr~lF~~A 446 (794)
.|-.+.+.|++|||||++++.+.....- ..+.+-+...... | +.. .-.+ +.......
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456999999999999999999776532 2222221111110 1 000 0001 11111111
Q ss_pred Hh---CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccC
Q 003807 447 KK---KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 523 (794)
Q Consensus 447 r~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~l 523 (794)
.. ..+++|++|++..- . ...+.+.+++.. ...-++-+|-.+.....|++.++. -.+.++-++
T Consensus 92 ~~~k~~~~~LiIlDD~~~~---~-----~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~- 156 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK---K-----LKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN- 156 (241)
T ss_pred cccCCCCCeEEEEeCCCCc---h-----hhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEEec-
Confidence 11 23679999996421 0 112345555532 233457777788888999999865 566666665
Q ss_pred CCHHHHHHHHHHHh
Q 003807 524 PDVRGRQEILELYL 537 (794)
Q Consensus 524 Pd~~eR~eILk~~l 537 (794)
-+..+..-|++.+.
T Consensus 157 ~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 157 NSKRDLENIYRNMN 170 (241)
T ss_pred CcHHHHHHHHHhcc
Confidence 56777777776653
No 459
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.035 Score=62.85 Aligned_cols=147 Identities=22% Similarity=0.348 Sum_probs=83.5
Q ss_pred CCCCCce-EEEEcCCCCcHHHHHHHHHHhc--CCCEEEEeCcchhhhhh------h--------hhhHHHHHHHHHHHhC
Q 003807 387 GGKLPKG-ILLTGAPGTGKTLLAKAIAGEA--GVPFFYRAGSEFEEMFV------G--------VGARRVRSLFQAAKKK 449 (794)
Q Consensus 387 G~~~Pkg-VLL~GPPGTGKT~LArAIA~ea--g~pfi~is~se~~e~~v------G--------~~~~~vr~lF~~Ar~~ 449 (794)
|+-.|.+ +||-|.||.|||||.-.++..+ ..+++|+++.+-....- | ..+..+.++.+.....
T Consensus 88 GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 88 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 3444433 6777999999998777776654 23899999877543321 1 1234577888888889
Q ss_pred CCeEEEEcCccccccccccc-ccc---hHHHHHHHHHhhhccccCCcEEEEEEcCCCC-CCChhhcCCCccceEEEccCC
Q 003807 450 APCIIFIDEIDAVGSTRKQW-EGH---TKKTLHQLLVEMDGFEQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNP 524 (794)
Q Consensus 450 aP~ILfIDEIDaL~~~r~~~-~~~---~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~-~LD~ALlRpGRFdr~I~V~lP 524 (794)
.|.+++||-|..+....-.. .+. .+...+.|...-. ..+-.+++++-..... .-.|.++- +-.|.+++|. -
T Consensus 168 ~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK--~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFE-G 243 (456)
T COG1066 168 KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK--TKNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFE-G 243 (456)
T ss_pred CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH--HcCCeEEEEEEEcccccccCchhee-eeeeEEEEEe-c
Confidence 99999999999986544221 111 1223333332221 1223345555333222 22344433 2456666664 2
Q ss_pred CHHHHHHHHHHHh
Q 003807 525 DVRGRQEILELYL 537 (794)
Q Consensus 525 d~~eR~eILk~~l 537 (794)
|......||+.+-
T Consensus 244 d~~~~~RiLR~vK 256 (456)
T COG1066 244 DRHSRYRILRSVK 256 (456)
T ss_pred cCCCceeeeehhc
Confidence 3344555666543
No 460
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.015 Score=58.16 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||+|++++++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999854
No 461
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.07 E-value=0.039 Score=56.44 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 003807 393 GILLTGAPGTGKTLLAKAIA 412 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA 412 (794)
-++|+||.|+|||++.|.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 462
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.06 E-value=0.3 Score=53.85 Aligned_cols=105 Identities=22% Similarity=0.334 Sum_probs=55.8
Q ss_pred HHHHHHHHHh--C-CCeEEEEcCcccccccccccccc-------hHHHHHHHHHhhhcccc-CCcEEE--EEEcCC---C
Q 003807 439 VRSLFQAAKK--K-APCIIFIDEIDAVGSTRKQWEGH-------TKKTLHQLLVEMDGFEQ-NEGIIL--MAATNL---P 502 (794)
Q Consensus 439 vr~lF~~Ar~--~-aP~ILfIDEIDaL~~~r~~~~~~-------~~~~LnqLL~eLDg~~~-~~~VIV--IaATN~---p 502 (794)
+..++++... . -|.++-||++.++.....-.... .-.....|+..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3444444433 2 47788899999997652211111 11233344444332222 344444 555542 2
Q ss_pred C--CCChhhcCCC------ccc-------------eEEEccCCCHHHHHHHHHHHhccCCCC
Q 003807 503 D--ILDPALTRPG------RFD-------------RHIVVPNPDVRGRQEILELYLQDKPLA 543 (794)
Q Consensus 503 ~--~LD~ALlRpG------RFd-------------r~I~V~lPd~~eR~eILk~~l~~~~l~ 543 (794)
. .++.++.... -|. ..|.++..+.+|-..+++.|....-+.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 2 3455554311 121 167888899999999999887655433
No 463
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.04 E-value=0.0048 Score=60.70 Aligned_cols=27 Identities=48% Similarity=0.775 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|.|+|+||||||+|+++++.. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999998 888773
No 464
>PF13479 AAA_24: AAA domain
Probab=96.03 E-value=0.011 Score=61.26 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=40.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEE-EEeCcc--hhh-----hhhhhhhHHHHHHHHHHH--hCCCeEEEEcCcc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF-YRAGSE--FEE-----MFVGVGARRVRSLFQAAK--KKAPCIIFIDEID 460 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi-~is~se--~~e-----~~vG~~~~~vr~lF~~Ar--~~aP~ILfIDEID 460 (794)
+..++||||||+|||++|..+ +-|++ -+..+. +.. .+.-.+...+.+.+..+. ...-..|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 446999999999999999888 44433 222221 100 011113344555554432 2345699999988
Q ss_pred cc
Q 003807 461 AV 462 (794)
Q Consensus 461 aL 462 (794)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 465
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.03 E-value=0.036 Score=64.84 Aligned_cols=77 Identities=29% Similarity=0.300 Sum_probs=48.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh------hh----------------------hh
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV----------------------GA 436 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v------G~----------------------~~ 436 (794)
......++++||||+|||+++..++.+. |-+.++++..+-.+.+. |. ..
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 3344568899999999999999987654 67777776543221110 00 01
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCcccccc
Q 003807 437 RRVRSLFQAAKKKAPCIIFIDEIDAVGS 464 (794)
Q Consensus 437 ~~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 464 (794)
..+..+.+......+.+|+||-+..+..
T Consensus 350 ~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 350 DHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 2223333344556788999999988754
No 466
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.02 E-value=0.023 Score=62.72 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc------C---CCEEEEeCcch-h-----hhh--hhhh---------------h
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA------G---VPFFYRAGSEF-E-----EMF--VGVG---------------A 436 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea------g---~pfi~is~se~-~-----e~~--vG~~---------------~ 436 (794)
....-+.++||||+|||+|+..++..+ | ...++++..+- . ... .+.. .
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCCh
Confidence 344457899999999999999987632 1 25677776551 1 000 0000 0
Q ss_pred ----HHHHHHHHHHHhCCCeEEEEcCcccccccccccccc---hHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 437 ----RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH---TKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 437 ----~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~---~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
..+..+........+.+|+||-|-++....-...+. .+..+.+++..|..+....++.|+.+
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~t 242 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVIT 242 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 111222222234567899999999885421111111 12345566666665544555555554
No 467
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.02 E-value=0.031 Score=60.03 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+-|.||.|+|||||.|++++-+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 347789999999999999999844
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.01 E-value=0.04 Score=64.38 Aligned_cols=40 Identities=28% Similarity=0.270 Sum_probs=29.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcch
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEF 427 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~ 427 (794)
.+...-+||+|+||||||+|+..++.+. |-+.++++..+-
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 3444568999999999999999876532 667777776543
No 469
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.00 E-value=0.012 Score=60.13 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.|+-++|+||+|+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35679999999999999999998765
No 470
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.00 E-value=0.0046 Score=60.10 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=27.1
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 396 LTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 396 L~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
|.||||+|||++|+.||.+.|. .+++..++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHH
Confidence 6799999999999999999985 455666665443
No 471
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.99 E-value=0.096 Score=60.27 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=47.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchhhh-------h--------h--h--h-hhHHHHHHHH
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM-------F--------V--G--V-GARRVRSLFQ 444 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~e~-------~--------v--G--~-~~~~vr~lF~ 444 (794)
..|.-++++|++|+|||+++..+|..+ |..+..+++..+... + . + . ......+.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 457789999999999999988887653 566777777644211 0 0 0 0 1123345555
Q ss_pred HHHhCCCeEEEEcCcccc
Q 003807 445 AAKKKAPCIIFIDEIDAV 462 (794)
Q Consensus 445 ~Ar~~aP~ILfIDEIDaL 462 (794)
.+......+|+||=...+
T Consensus 177 ~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHhcCCCEEEEeCCCcc
Confidence 565566678888875544
No 472
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.93 E-value=0.017 Score=65.85 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
..+.|.|.|++|||||||+++||...|.+++.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 34679999999999999999999999887654
No 473
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.91 E-value=0.0058 Score=61.88 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea 415 (794)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999997666665554
No 474
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.90 E-value=0.035 Score=55.14 Aligned_cols=25 Identities=44% Similarity=0.638 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..-+.|.||.|+|||+|++.+++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999965
No 475
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.90 E-value=0.018 Score=70.50 Aligned_cols=96 Identities=27% Similarity=0.316 Sum_probs=54.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCcchhhh----hhhhhhHHHHHHHHHHH-----hCCCeEEEEcCcc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFEEM----FVGVGARRVRSLFQAAK-----KKAPCIIFIDEID 460 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e---ag~pfi~is~se~~e~----~vG~~~~~vr~lF~~Ar-----~~aP~ILfIDEID 460 (794)
-++|.|+||||||++++++... .|..++.+....-... ..|..+..+..+..... .....+|+|||+-
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEas 449 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAG 449 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECcc
Confidence 5789999999999999999653 3666666544332111 11222223333321111 1234799999988
Q ss_pred cccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 461 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 461 aL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
.+.. ..+..|+.... .....+|++|=.+
T Consensus 450 Mv~~----------~~~~~Ll~~~~--~~~~kliLVGD~~ 477 (744)
T TIGR02768 450 MVGS----------RQMARVLKEAE--EAGAKVVLVGDPE 477 (744)
T ss_pred cCCH----------HHHHHHHHHHH--hcCCEEEEECChH
Confidence 7742 34455665433 2345677776333
No 476
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.88 E-value=0.022 Score=63.59 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=60.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcch------hhhh--hhhh---------------hHH
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF------EEMF--VGVG---------------ARR 438 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se~------~e~~--vG~~---------------~~~ 438 (794)
-.-++++|+||+|||.|+..+|-.. +.+.++++..+- .... .+.. ...
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~e~ 202 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDH 202 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCHHH
Confidence 3457799999999999998887432 236777776551 1100 0000 011
Q ss_pred HHHHH----HHHHhCCCeEEEEcCccccccccccccc---chHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 439 VRSLF----QAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 439 vr~lF----~~Ar~~aP~ILfIDEIDaL~~~r~~~~~---~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
...++ .......+.+|+||-|-++....-...+ ..++.+.+++..|..+....++.||.+.
T Consensus 203 ~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 203 QSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 11122 2234456889999999987542111111 1233466777666665555666666553
No 477
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.85 E-value=0.038 Score=62.14 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=41.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC------CCEEEEeC-cchhh------------hhhhhhhHHHHHHHHHHHhCCCeE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG------VPFFYRAG-SEFEE------------MFVGVGARRVRSLFQAAKKKAPCI 453 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag------~pfi~is~-se~~e------------~~vG~~~~~vr~lF~~Ar~~aP~I 453 (794)
.++++||+|+||||+++++++... ..++.+.. -++.- .-++..........+.+-...|.+
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~ 215 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPHA 215 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCCE
Confidence 589999999999999999998762 22332211 11100 001111123445555667788999
Q ss_pred EEEcCcc
Q 003807 454 IFIDEID 460 (794)
Q Consensus 454 LfIDEID 460 (794)
+++.|+.
T Consensus 216 i~vGEiR 222 (358)
T TIGR02524 216 ILVGEAR 222 (358)
T ss_pred EeeeeeC
Confidence 9999863
No 478
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.85 E-value=0.019 Score=58.65 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGS 425 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea-------g~pfi~is~s 425 (794)
++|+.|++|+|||++.++++..+ .+.++.+++.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 79999999999999999887654 3445666543
No 479
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.85 E-value=0.021 Score=64.86 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag 416 (794)
-++|+||||+|||++++.+++...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 499999999999999999999753
No 480
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.85 E-value=0.0095 Score=66.40 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=45.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeC-cchh-------hhh------hhhhhHHHHHHHHHHHhCCCeEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAG-SEFE-------EMF------VGVGARRVRSLFQAAKKKAPCIIF 455 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~--pfi~is~-se~~-------e~~------vG~~~~~vr~lF~~Ar~~aP~ILf 455 (794)
+++++.|++|+|||++.+++.+...- ..+.+.. .++. ... .|.+.-.+.++++.+-+..|+.|+
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~Ii 258 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIV 258 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEE
Confidence 48999999999999999999886631 1222211 1111 000 122234567888888889999999
Q ss_pred EcCcc
Q 003807 456 IDEID 460 (794)
Q Consensus 456 IDEID 460 (794)
+.|+-
T Consensus 259 vGEiR 263 (340)
T TIGR03819 259 VGEVR 263 (340)
T ss_pred EeCcC
Confidence 99974
No 481
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.85 E-value=0.016 Score=56.42 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVP 418 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~p 418 (794)
.-++|.|+.|+|||+++|.+++.++.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 358899999999999999999999864
No 482
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.81 E-value=0.02 Score=72.92 Aligned_cols=133 Identities=23% Similarity=0.306 Sum_probs=86.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh--hhhhh----hhH---HHHH-HHHHHHhCCCeEEEEcCcccc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE--MFVGV----GAR---RVRS-LFQAAKKKAPCIIFIDEIDAV 462 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e--~~vG~----~~~---~vr~-lF~~Ar~~aP~ILfIDEIDaL 462 (794)
.+||.||..+|||++...+|++.|-.|+.++..+..+ .|.|. ... --.. +....|++ .-|++||+.-.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDELNLA 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDELNLA 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeeccccC
Confidence 4999999999999999999999999999999876533 23322 111 1112 23333333 58999998654
Q ss_pred cccccccccchHHHHHHHHHhhhc---------cccCCcEEEEEEcCCCC------CCChhhcCCCccceEEEccCCCHH
Q 003807 463 GSTRKQWEGHTKKTLHQLLVEMDG---------FEQNEGIILMAATNLPD------ILDPALTRPGRFDRHIVVPNPDVR 527 (794)
Q Consensus 463 ~~~r~~~~~~~~~~LnqLL~eLDg---------~~~~~~VIVIaATN~p~------~LD~ALlRpGRFdr~I~V~lPd~~ 527 (794)
.. ..-..+|.||..-.. ..+...+.++||-|.|. .|..|++. || ..++|..-..+
T Consensus 968 pT-------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFddiped 1037 (4600)
T COG5271 968 PT-------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDDIPED 1037 (4600)
T ss_pred cH-------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-HhhhcccCcHH
Confidence 22 224556666632111 12445678888888775 46778876 88 45666666677
Q ss_pred HHHHHHHHHh
Q 003807 528 GRQEILELYL 537 (794)
Q Consensus 528 eR~eILk~~l 537 (794)
+...||...+
T Consensus 1038 Ele~ILh~rc 1047 (4600)
T COG5271 1038 ELEEILHGRC 1047 (4600)
T ss_pred HHHHHHhccC
Confidence 8888886644
No 483
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.80 E-value=0.038 Score=56.22 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...+.|.||+|+|||+|.+.+++..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999976
No 484
>PRK12338 hypothetical protein; Provisional
Probab=95.79 E-value=0.1 Score=57.82 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
.|.-+++.|+||||||++|+++|..+|...+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 3667999999999999999999999998653
No 485
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.77 E-value=0.031 Score=55.97 Aligned_cols=23 Identities=35% Similarity=0.252 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.+|+++|+|||++|-++|-++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999997655
No 486
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.76 E-value=0.046 Score=61.36 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.|..+++.||.|||||++.++|...+
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 45689999999999999999998766
No 487
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.038 Score=64.83 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...+.|+||+|+|||+++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998753
No 488
>PRK14526 adenylate kinase; Provisional
Probab=95.73 E-value=0.0096 Score=62.02 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
.++|.||||+|||++++.+|...+.+++. ..++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is--~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS--TGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee--cChH
Confidence 38899999999999999999999876654 4444
No 489
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.70 E-value=0.06 Score=55.23 Aligned_cols=24 Identities=46% Similarity=0.711 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||+|+|||+|++.+++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999854
No 490
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.69 E-value=0.037 Score=59.27 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=60.8
Q ss_pred EEcCCCCcHHHHHHHHHHhcC---------CCEEEEeCcc-hh--------hhhhhhh------------------hHHH
Q 003807 396 LTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSE-FE--------EMFVGVG------------------ARRV 439 (794)
Q Consensus 396 L~GPPGTGKT~LArAIA~eag---------~pfi~is~se-~~--------e~~vG~~------------------~~~v 439 (794)
|+||||+|||.|+-.+|-..- ...++++... |. +.+--.. ...+
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L 122 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELL 122 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHH
Confidence 999999999999998876543 3477776543 21 1110000 0111
Q ss_pred HHHHHHHHhCCCeEEEEcCcccccccccccc---cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCC
Q 003807 440 RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD 506 (794)
Q Consensus 440 r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~---~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD 506 (794)
..+-.........+|+||-|-++....-... ....+.+..++..|..+....++.|+.|..-...+|
T Consensus 123 ~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 123 EQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 1222222334567999999999865321111 122456667766666665666766665443333333
No 491
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.67 E-value=0.047 Score=58.00 Aligned_cols=38 Identities=32% Similarity=0.397 Sum_probs=28.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 425 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~s 425 (794)
..+..=++|.|.||.|||++|-.+|..+ +.++++++..
T Consensus 16 ~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlE 57 (259)
T PF03796_consen 16 LRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLE 57 (259)
T ss_dssp B-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 3333457888999999999999998744 5788888753
No 492
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.082 Score=63.61 Aligned_cols=219 Identities=24% Similarity=0.330 Sum_probs=122.5
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEc----CCCCcHHHHHHHHHHhc---------
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTG----APGTGKTLLAKAIAGEA--------- 415 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~G----PPGTGKT~LArAIA~ea--------- 415 (794)
.|...+.+|.++.|....+.....- ++. +...-...+..+.++| ++|.+++..++.+-.+.
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~ 168 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLS--YLI----LLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVS 168 (647)
T ss_pred ccccCCcchHHHHHhhhhHHHHHHh--hhh----HHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhh
Confidence 4555566788888876554433322 100 1111223344677777 99999999887664432
Q ss_pred ------------CCCEEEEeCcchhhh--------hhhh----hhHHH-HHHHHHHHhCCCeEEEEcCcccccccccccc
Q 003807 416 ------------GVPFFYRAGSEFEEM--------FVGV----GARRV-RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE 470 (794)
Q Consensus 416 ------------g~pfi~is~se~~e~--------~vG~----~~~~v-r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~ 470 (794)
+.||++-........ |-|. +..++ -....+|.. .||||||++.|..
T Consensus 169 ~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAng---GVLiIdei~lL~~------ 239 (647)
T COG1067 169 VPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANG---GVLIIDEIGLLAQ------ 239 (647)
T ss_pred hhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccC---cEEEEEhhhhhCc------
Confidence 245554333222111 1110 01111 122233333 4999999999953
Q ss_pred cchHHHHHHHHHhhhcc-------------------ccCCcEEEEEEcCCCC-----CCChhhcCCCccceEEEccCC-C
Q 003807 471 GHTKKTLHQLLVEMDGF-------------------EQNEGIILMAATNLPD-----ILDPALTRPGRFDRHIVVPNP-D 525 (794)
Q Consensus 471 ~~~~~~LnqLL~eLDg~-------------------~~~~~VIVIaATN~p~-----~LD~ALlRpGRFdr~I~V~lP-d 525 (794)
..++.+|+.|..- .-...+.+|++.|+.+ .+|+.+..--++.-.+.-+.| +
T Consensus 240 ----~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~ 315 (647)
T COG1067 240 ----PLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPIT 315 (647)
T ss_pred ----HHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCC
Confidence 2333333333211 0012467777777542 345555441122234444667 6
Q ss_pred HHHHHHHHHHHhccCCCC---CcccHHHHHH--------------------HHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 526 VRGRQEILELYLQDKPLA---DDVDVKAIAR--------------------DLANLVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 526 ~~eR~eILk~~l~~~~l~---~dvdl~~IAr--------------------DL~nlvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
.+.|.+.++.+.+....+ +..+..++.+ ||.+++..|+..|..+++..|+.+|+++|
T Consensus 316 ~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a 395 (647)
T COG1067 316 DANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEA 395 (647)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHH
Confidence 678888888777543221 3344333332 99999999999999999999999999999
Q ss_pred HHHH
Q 003807 583 KDRI 586 (794)
Q Consensus 583 i~ri 586 (794)
+.+.
T Consensus 396 ~~~~ 399 (647)
T COG1067 396 LQKR 399 (647)
T ss_pred HHhh
Confidence 9874
No 493
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.65 E-value=0.057 Score=54.65 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-.+|+||.|+|||.+..||.--+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999996544
No 494
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.24 Score=53.18 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=94.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh---hhh--hhh---HHHHHHHHHHHhC---CCeEE-
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM---FVG--VGA---RRVRSLFQAAKKK---APCII- 454 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~---~vG--~~~---~~vr~lF~~Ar~~---aP~IL- 454 (794)
+.+.|.-+||=|+||+|||++|.-+|.++|.+-+. +...+.+. ..+ ... ...-+.++..+.. .| |+
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi-sTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~p-iia 162 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVI-STDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENP-IIA 162 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceee-cchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcc-hhh
Confidence 34557889999999999999999999999987553 22222221 111 000 1111122222111 11 11
Q ss_pred -EEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHH
Q 003807 455 -FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEIL 533 (794)
Q Consensus 455 -fIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eIL 533 (794)
|.|....+.. ..+..+..-++ ....+|+=+.-=-|..+++..+... ...+.+-.+|.+.-+.=|
T Consensus 163 GF~dqa~~V~~-------GI~~VI~RAi~------eG~~lIIEGvHlVPg~i~~~~~~~n--~~~~~l~i~dee~Hr~RF 227 (299)
T COG2074 163 GFEDQASAVMV-------GIEAVIERAIE------EGEDLIIEGVHLVPGLIKEEALGNN--VFMFMLYIADEELHRERF 227 (299)
T ss_pred hHHHHhHHHHH-------HHHHHHHHHHh------cCcceEEEeeeeccccccHhhhccc--eEEEEEEeCCHHHHHHHH
Confidence 2222221110 01122222221 2233444444345667776665211 234555566766555444
Q ss_pred HHHhccCCCCCcccHHHHHH---HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 003807 534 ELYLQDKPLADDVDVKAIAR---DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILM 588 (794)
Q Consensus 534 k~~l~~~~l~~dvdl~~IAr---DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~ 588 (794)
......... .-.....++ ++..+-......|...|-..|..+|+++++++++.
T Consensus 228 ~~R~~~t~~--~rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~ 283 (299)
T COG2074 228 YDRIRYTHA--SRPGGRYLEYFKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILE 283 (299)
T ss_pred HHHHHHHhc--cCchhHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHH
Confidence 333332211 111223333 66777777777777888889999999999998864
No 495
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.092 Score=59.56 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcch
Q 003807 364 DDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (794)
Q Consensus 364 deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~ 427 (794)
+++...+.+.+.. +..+..+ ....++.++|+||+|+|||+++..+|..+ +..+..+++..+
T Consensus 181 ~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 181 DDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred HHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 4455555555443 2222211 23346679999999999999999998755 555555555443
No 496
>PHA00012 I assembly protein
Probab=95.58 E-value=0.048 Score=60.40 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=62.9
Q ss_pred EEEEcCCCCcHHHHHHH-HHHh--cCCCEEEEeCcchhhhh--hhhhhH-----------HHHHHHHHHHh------CCC
Q 003807 394 ILLTGAPGTGKTLLAKA-IAGE--AGVPFFYRAGSEFEEMF--VGVGAR-----------RVRSLFQAAKK------KAP 451 (794)
Q Consensus 394 VLL~GPPGTGKT~LArA-IA~e--ag~pfi~is~se~~e~~--vG~~~~-----------~vr~lF~~Ar~------~aP 451 (794)
-+++|-||+|||..|-. |... .|.++ ..|..-..+.+ +|..++ ..+++....+. ...
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr~V-aTNidL~le~~p~~g~~a~~~~~iripDkP~~~dl~~~G~~n~~ydep~g 82 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGCIV-ATNLNLRLHHLPQVGRFAKQPRVMRIPDKPTLEDLEAIGRGNLSYDESKN 82 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCEE-EeCCccchhhccccCccccCcceEeccCCCcHHHHHhhccccccCCCCCC
Confidence 58999999999986543 2222 25433 33433222332 121110 12333222221 234
Q ss_pred eEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhc
Q 003807 452 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (794)
Q Consensus 452 ~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALl 510 (794)
+|++|||++...+.|...... .....+.+.. ....++-+|.+|..|..+|+.++
T Consensus 83 sLlVlDEaq~~fp~R~~~sk~-p~~vie~l~~----hRh~G~DvilITQ~ps~VDs~IR 136 (361)
T PHA00012 83 GLLVLDECGTWFNSRSWNDKE-RQPVIDWFLH----ARKLGWDIIFIIQDISIMDKQAR 136 (361)
T ss_pred cEEEEECcccccCCCCcCcCC-cHHHHHHHHH----hccCCceEEEEcCCHHHHhHHHH
Confidence 699999999999888754322 2322333322 23567778889999999998885
No 497
>PRK04132 replication factor C small subunit; Provisional
Probab=95.57 E-value=0.0082 Score=73.84 Aligned_cols=51 Identities=27% Similarity=0.521 Sum_probs=40.2
Q ss_pred cccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHH
Q 003807 345 NKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 407 (794)
Q Consensus 345 ~~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~L 407 (794)
++++.....+.+|+||+|++.+++.|+..+. ..++| +++|+||||+||++.
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~-----------~~~i~-h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVK-----------TGSMP-HLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCC-eEEEECCCCCCcccc
Confidence 3455566677899999999999999988876 23455 478999999999643
No 498
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.57 E-value=0.013 Score=58.60 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e 429 (794)
|.-|+|+|.||+|||++|+++...+ |.+.+.+++..+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 3468899999999999999998866 78888888776654
No 499
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.57 E-value=0.054 Score=54.40 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 428 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~ 428 (794)
..+.-+.|.|+||+|||++|+++++.+ +...+.+++..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 345578999999999999999999886 4456667765554
No 500
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.56 E-value=0.083 Score=53.96 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
....+.|.||+|+|||+|.+.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999997
Done!