Query 003807
Match_columns 794
No_of_seqs 674 out of 3889
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 5.4E-82 1.8E-86 715.9 47.6 436 352-789 10-473 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.4E-78 4.8E-83 691.5 42.9 421 353-777 26-471 (499)
3 4b4t_J 26S protease regulatory 100.0 5.3E-48 1.8E-52 428.1 27.5 245 348-592 138-395 (405)
4 2di4_A Zinc protease, cell div 100.0 2.1E-48 7.1E-53 403.9 17.4 189 587-775 1-202 (238)
5 4b4t_I 26S protease regulatory 100.0 1.3E-46 4.4E-51 418.8 27.9 243 349-591 173-428 (437)
6 4b4t_H 26S protease regulatory 100.0 2.5E-46 8.5E-51 419.9 26.8 244 350-593 201-457 (467)
7 4b4t_M 26S protease regulatory 100.0 8.1E-46 2.8E-50 415.1 25.6 240 350-589 173-425 (434)
8 4b4t_L 26S protease subunit RP 100.0 1.4E-45 4.9E-50 413.4 27.5 240 350-589 173-425 (437)
9 4b4t_K 26S protease regulatory 100.0 1.2E-44 4.2E-49 405.1 27.0 239 350-588 164-416 (428)
10 3cf2_A TER ATPase, transitiona 100.0 1.6E-40 5.6E-45 395.5 10.9 221 349-569 468-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 1.7E-38 5.8E-43 378.2 20.8 237 352-588 198-461 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 8.9E-36 3.1E-40 308.3 27.8 241 350-590 4-256 (257)
13 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.7E-35 9.3E-40 302.9 20.8 245 354-598 2-261 (262)
14 3cf0_A Transitional endoplasmi 100.0 6.3E-35 2.2E-39 311.0 22.9 238 349-586 6-281 (301)
15 2x8a_A Nuclear valosin-contain 100.0 1.5E-34 5E-39 305.6 21.9 236 353-588 5-266 (274)
16 3h4m_A Proteasome-activating n 100.0 8.8E-34 3E-38 296.5 25.5 239 351-589 10-261 (285)
17 1ixz_A ATP-dependent metallopr 100.0 9.5E-33 3.3E-37 285.2 25.0 235 349-583 7-253 (254)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-32 5.4E-37 296.0 25.1 216 351-569 5-233 (322)
19 3eie_A Vacuolar protein sortin 100.0 8.8E-33 3E-37 296.9 21.4 219 348-569 8-238 (322)
20 1iy2_A ATP-dependent metallopr 100.0 1.2E-31 4.1E-36 281.5 26.4 235 349-583 31-277 (278)
21 2r62_A Cell division protease 100.0 2E-34 6.9E-39 299.2 3.9 241 350-590 3-257 (268)
22 3hu3_A Transitional endoplasmi 100.0 8.2E-32 2.8E-36 306.6 23.5 234 353-586 199-459 (489)
23 2qp9_X Vacuolar protein sortin 100.0 1.1E-31 3.6E-36 293.3 22.5 220 347-569 40-271 (355)
24 2zan_A Vacuolar protein sortin 100.0 2.1E-30 7.2E-35 291.2 22.3 221 346-569 122-355 (444)
25 3b9p_A CG5977-PA, isoform A; A 100.0 2.1E-29 7.3E-34 265.2 21.5 236 348-586 11-272 (297)
26 3d8b_A Fidgetin-like protein 1 100.0 7.4E-29 2.5E-33 270.6 23.8 237 349-588 75-336 (357)
27 3vfd_A Spastin; ATPase, microt 100.0 1.2E-28 4.1E-33 271.2 24.5 238 346-586 103-365 (389)
28 3t15_A Ribulose bisphosphate c 100.0 9.4E-29 3.2E-33 263.1 14.2 217 386-617 31-281 (293)
29 1ypw_A Transitional endoplasmi 100.0 1.1E-30 3.9E-35 313.1 -2.4 220 351-570 470-702 (806)
30 1ypw_A Transitional endoplasmi 99.9 9.3E-26 3.2E-30 270.6 22.4 236 352-587 198-460 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 2E-23 6.9E-28 234.9 11.6 164 354-525 33-225 (456)
32 3syl_A Protein CBBX; photosynt 99.9 1.1E-21 3.7E-26 207.0 17.2 217 356-580 28-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 3.8E-21 1.3E-25 207.6 20.8 243 354-620 40-362 (368)
34 3pfi_A Holliday junction ATP-d 99.9 1.9E-20 6.6E-25 200.4 22.6 213 347-586 18-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 3E-19 1E-23 189.2 19.9 206 353-586 7-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 2E-19 6.9E-24 188.5 15.9 176 358-535 15-213 (310)
37 1g41_A Heat shock protein HSLU 99.8 3E-20 1E-24 208.8 8.7 169 358-534 15-189 (444)
38 1d2n_A N-ethylmaleimide-sensit 99.8 7.6E-19 2.6E-23 183.1 15.3 174 357-534 32-209 (272)
39 3m6a_A ATP-dependent protease 99.8 7.1E-19 2.4E-23 202.5 13.8 215 356-586 79-341 (543)
40 3u61_B DNA polymerase accessor 99.8 3.9E-18 1.3E-22 181.7 15.9 203 347-584 15-235 (324)
41 2chg_A Replication factor C sm 99.8 2.5E-17 8.7E-22 161.8 20.4 196 351-584 10-224 (226)
42 3hws_A ATP-dependent CLP prote 99.8 7.1E-18 2.4E-22 183.5 17.6 174 360-535 17-267 (363)
43 2v1u_A Cell division control p 99.8 2.4E-17 8.1E-22 177.2 21.3 216 356-587 17-277 (387)
44 2z4s_A Chromosomal replication 99.8 9.8E-18 3.4E-22 188.2 18.3 211 354-587 101-333 (440)
45 1g8p_A Magnesium-chelatase 38 99.7 7.3E-17 2.5E-21 172.4 21.6 210 353-589 19-325 (350)
46 3pvs_A Replication-associated 99.7 1.3E-17 4.4E-22 187.9 16.4 198 353-586 21-244 (447)
47 1jbk_A CLPB protein; beta barr 99.7 3.3E-18 1.1E-22 164.3 9.6 159 353-533 17-194 (195)
48 1sxj_A Activator 1 95 kDa subu 99.7 9.8E-18 3.3E-22 191.5 15.0 225 346-585 27-273 (516)
49 1l8q_A Chromosomal replication 99.7 6.9E-17 2.4E-21 172.5 19.0 167 354-542 7-184 (324)
50 3bos_A Putative DNA replicatio 99.7 1.3E-16 4.4E-21 160.1 19.6 198 354-584 24-241 (242)
51 1njg_A DNA polymerase III subu 99.7 2.1E-16 7.3E-21 156.5 19.6 198 350-583 15-248 (250)
52 2qby_B CDC6 homolog 3, cell di 99.7 2E-16 6.8E-21 170.9 20.8 205 357-587 19-271 (384)
53 1sxj_D Activator 1 41 kDa subu 99.7 9.3E-17 3.2E-21 171.5 17.3 206 346-584 25-261 (353)
54 3pxg_A Negative regulator of g 99.7 1.1E-16 3.7E-21 181.0 18.8 156 348-539 170-340 (468)
55 2r44_A Uncharacterized protein 99.7 9.5E-17 3.3E-21 171.7 17.1 206 356-589 25-300 (331)
56 1r6b_X CLPA protein; AAA+, N-t 99.7 1.7E-16 5.9E-21 188.5 20.2 216 352-587 180-434 (758)
57 1in4_A RUVB, holliday junction 99.7 1.2E-15 4E-20 164.8 24.7 209 352-587 19-251 (334)
58 1um8_A ATP-dependent CLP prote 99.7 3.5E-16 1.2E-20 170.7 18.3 174 359-534 22-283 (376)
59 2chq_A Replication factor C sm 99.7 2E-16 7E-21 166.0 15.5 206 347-583 6-223 (319)
60 2qby_A CDC6 homolog 1, cell di 99.7 7.7E-16 2.6E-20 165.0 20.2 216 355-587 17-273 (386)
61 2p65_A Hypothetical protein PF 99.7 4.4E-17 1.5E-21 156.7 8.7 153 353-525 17-187 (187)
62 3pxi_A Negative regulator of g 99.7 4.1E-16 1.4E-20 185.6 17.1 154 351-540 173-341 (758)
63 1sxj_B Activator 1 37 kDa subu 99.7 1.2E-15 4.1E-20 160.4 18.4 201 348-583 11-228 (323)
64 4fcw_A Chaperone protein CLPB; 99.7 5.6E-16 1.9E-20 163.1 15.7 167 358-539 17-231 (311)
65 3te6_A Regulatory protein SIR3 99.7 3.3E-16 1.1E-20 169.3 13.8 160 360-540 22-214 (318)
66 1jr3_A DNA polymerase III subu 99.7 2.3E-15 8E-20 161.9 19.1 197 351-583 9-241 (373)
67 1iqp_A RFCS; clamp loader, ext 99.6 2.7E-15 9.1E-20 158.0 18.5 202 347-583 14-231 (327)
68 3pxi_A Negative regulator of g 99.6 1.9E-15 6.4E-20 179.9 18.6 163 357-539 490-677 (758)
69 1qvr_A CLPB protein; coiled co 99.6 2.2E-15 7.6E-20 181.7 18.6 167 352-539 164-347 (854)
70 1fnn_A CDC6P, cell division co 99.6 1.5E-14 5E-19 156.1 22.7 212 356-587 15-275 (389)
71 2bjv_A PSP operon transcriptio 99.6 3.9E-15 1.3E-19 154.3 15.9 196 355-579 3-250 (265)
72 1r6b_X CLPA protein; AAA+, N-t 99.6 4.8E-15 1.7E-19 176.1 18.0 165 358-539 458-668 (758)
73 1sxj_C Activator 1 40 kDa subu 99.6 9.1E-15 3.1E-19 157.4 16.6 162 347-541 14-186 (340)
74 1sxj_E Activator 1 40 kDa subu 99.6 2.2E-14 7.6E-19 153.8 16.2 176 348-553 4-224 (354)
75 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 6.3E-15 2.2E-19 168.2 11.0 201 358-586 22-285 (500)
76 1ojl_A Transcriptional regulat 99.5 2E-14 6.9E-19 153.7 13.0 194 358-580 2-246 (304)
77 3f9v_A Minichromosome maintena 99.5 2.7E-14 9.4E-19 166.1 8.5 209 358-586 295-587 (595)
78 1qvr_A CLPB protein; coiled co 99.5 1.5E-13 5.1E-18 165.9 15.2 167 357-538 557-771 (854)
79 3n70_A Transport activator; si 99.5 8.1E-14 2.8E-18 132.6 9.9 113 358-502 1-116 (145)
80 3co5_A Putative two-component 99.4 1.1E-13 3.7E-18 131.6 6.6 112 359-502 5-116 (143)
81 3k1j_A LON protease, ATP-depen 99.4 7.9E-13 2.7E-17 153.9 13.9 209 351-585 34-374 (604)
82 1w5s_A Origin recognition comp 99.4 1.1E-11 3.8E-16 134.8 20.3 220 356-587 20-294 (412)
83 1a5t_A Delta prime, HOLB; zinc 99.4 1E-11 3.5E-16 134.0 19.0 133 387-537 20-180 (334)
84 3cmw_A Protein RECA, recombina 99.4 9.3E-13 3.2E-17 167.0 10.7 150 352-502 1014-1218(1706)
85 2gno_A DNA polymerase III, gam 99.3 1.7E-11 5.7E-16 131.6 14.5 142 362-537 1-152 (305)
86 1ny5_A Transcriptional regulat 99.2 3.3E-11 1.1E-15 133.1 13.0 196 357-582 136-383 (387)
87 4akg_A Glutathione S-transfera 99.2 2.2E-10 7.4E-15 151.1 22.2 137 392-539 1268-1433(2695)
88 3ec2_A DNA replication protein 99.0 6.1E-10 2.1E-14 108.6 10.8 133 354-503 6-144 (180)
89 2w58_A DNAI, primosome compone 99.0 7.4E-10 2.5E-14 109.6 10.8 103 354-463 21-128 (202)
90 3dzd_A Transcriptional regulat 98.9 1.8E-09 6E-14 118.6 10.5 183 358-566 129-361 (368)
91 2vhj_A Ntpase P4, P4; non- hyd 98.8 2.2E-09 7.4E-14 116.3 5.6 115 392-509 124-242 (331)
92 2kjq_A DNAA-related protein; s 98.8 6.7E-09 2.3E-13 99.9 8.3 103 391-520 36-144 (149)
93 3f8t_A Predicted ATPase involv 98.8 2.5E-08 8.5E-13 112.7 12.0 202 360-586 215-483 (506)
94 2qgz_A Helicase loader, putati 98.8 1.2E-08 4.2E-13 109.2 8.7 101 355-463 121-227 (308)
95 2fna_A Conserved hypothetical 98.7 5.3E-07 1.8E-11 95.2 18.2 157 356-539 11-224 (357)
96 2r2a_A Uncharacterized protein 98.7 3.2E-08 1.1E-12 100.0 7.9 132 390-529 4-158 (199)
97 2qen_A Walker-type ATPase; unk 98.6 1.8E-06 6E-11 91.1 19.3 161 356-540 10-219 (350)
98 1svm_A Large T antigen; AAA+ f 98.6 3.8E-08 1.3E-12 108.7 5.9 120 386-523 164-284 (377)
99 3kw6_A 26S protease regulatory 98.5 2E-07 6.7E-12 80.1 8.1 68 522-589 1-76 (78)
100 3vkg_A Dynein heavy chain, cyt 98.5 2.5E-06 8.7E-11 113.9 20.9 135 392-538 1305-1470(3245)
101 4akg_A Glutathione S-transfera 98.5 1.4E-06 4.9E-11 115.5 18.3 126 392-534 646-790 (2695)
102 2krk_A 26S protease regulatory 98.4 3.6E-07 1.2E-11 80.5 7.6 69 521-589 8-84 (86)
103 3vlf_B 26S protease regulatory 98.4 4.7E-07 1.6E-11 79.9 8.0 71 525-595 2-80 (88)
104 3cmu_A Protein RECA, recombina 98.4 3.9E-07 1.3E-11 117.6 10.4 113 388-500 1424-1562(2050)
105 1jr3_D DNA polymerase III, del 98.2 4.9E-06 1.7E-10 89.3 11.3 173 389-585 16-208 (343)
106 1tue_A Replication protein E1; 98.2 1.3E-06 4.4E-11 89.1 5.2 29 391-419 58-86 (212)
107 1ye8_A Protein THEP1, hypothet 98.0 2.8E-05 9.7E-10 76.7 11.2 28 393-420 2-29 (178)
108 3vkg_A Dynein heavy chain, cyt 97.9 4E-05 1.4E-09 102.8 14.2 126 392-534 605-750 (3245)
109 3aji_B S6C, proteasome (prosom 97.9 1.1E-05 3.7E-10 69.9 6.0 65 525-589 2-74 (83)
110 2w0m_A SSO2452; RECA, SSPF, un 97.9 3.6E-05 1.2E-09 76.3 10.4 35 391-425 23-60 (235)
111 2cvh_A DNA repair and recombin 97.9 4.3E-05 1.5E-09 75.6 10.4 38 389-426 18-55 (220)
112 1u0j_A DNA replication protein 97.9 6.5E-05 2.2E-09 79.3 12.2 27 391-417 104-130 (267)
113 3upu_A ATP-dependent DNA helic 97.8 4.6E-05 1.6E-09 85.5 10.6 130 346-500 12-165 (459)
114 2dzn_B 26S protease regulatory 97.7 6.4E-06 2.2E-10 71.4 1.3 65 527-591 1-73 (82)
115 1xp8_A RECA protein, recombina 97.7 0.00011 3.6E-09 80.9 10.8 112 389-500 72-209 (366)
116 1n0w_A DNA repair protein RAD5 97.7 6.3E-05 2.2E-09 75.5 8.1 75 390-464 23-133 (243)
117 2zr9_A Protein RECA, recombina 97.6 9.3E-05 3.2E-09 80.7 8.7 74 391-464 61-153 (349)
118 1qhx_A CPT, protein (chloramph 97.6 0.00014 4.7E-09 69.9 8.2 38 391-428 3-40 (178)
119 3hr8_A Protein RECA; alpha and 97.6 0.00021 7.2E-09 78.3 10.6 107 392-498 62-194 (356)
120 3cmu_A Protein RECA, recombina 97.6 0.00012 4.1E-09 94.9 9.5 114 388-501 1078-1217(2050)
121 2z43_A DNA repair and recombin 97.6 0.0001 3.4E-09 79.1 7.5 111 389-499 105-255 (324)
122 2ehv_A Hypothetical protein PH 97.5 0.00038 1.3E-08 70.0 11.1 126 390-522 29-206 (251)
123 1u94_A RECA protein, recombina 97.5 0.00018 6.2E-09 78.7 8.9 113 388-500 60-198 (356)
124 1v5w_A DMC1, meiotic recombina 97.4 0.00035 1.2E-08 75.7 9.6 109 392-500 123-272 (343)
125 3sfz_A APAF-1, apoptotic pepti 97.4 0.0026 8.8E-08 78.1 17.7 150 355-539 121-301 (1249)
126 1z6t_A APAF-1, apoptotic prote 97.4 0.0017 5.8E-08 74.3 15.1 47 357-413 123-169 (591)
127 4a74_A DNA repair and recombin 97.3 0.00024 8.2E-09 70.6 6.6 36 391-426 25-69 (231)
128 2dr3_A UPF0273 protein PH0284; 97.3 0.00083 2.8E-08 67.3 10.6 37 389-425 21-60 (247)
129 3io5_A Recombination and repai 97.3 0.00061 2.1E-08 73.8 9.7 106 393-498 30-168 (333)
130 1gvn_B Zeta; postsegregational 97.3 0.00068 2.3E-08 71.7 9.8 61 364-428 10-70 (287)
131 2p5t_B PEZT; postsegregational 97.3 0.00068 2.3E-08 69.9 9.4 41 388-428 29-69 (253)
132 2zts_A Putative uncharacterize 97.2 0.00065 2.2E-08 68.1 8.7 37 389-425 28-68 (251)
133 3trf_A Shikimate kinase, SK; a 97.2 0.00017 5.7E-09 69.9 4.1 32 391-422 5-36 (185)
134 2a5y_B CED-4; apoptosis; HET: 97.2 0.0074 2.5E-07 69.1 17.7 164 361-559 131-326 (549)
135 1nlf_A Regulatory protein REPA 97.2 0.001 3.5E-08 69.2 9.6 24 392-415 31-54 (279)
136 2i1q_A DNA repair and recombin 97.2 0.00038 1.3E-08 74.2 6.3 111 389-499 96-256 (322)
137 2r6a_A DNAB helicase, replicat 97.2 0.0012 4.3E-08 73.9 10.7 39 387-425 199-241 (454)
138 2rhm_A Putative kinase; P-loop 97.2 0.00032 1.1E-08 67.9 5.0 33 389-421 3-35 (193)
139 1pzn_A RAD51, DNA repair and r 97.1 0.00089 3E-08 72.8 8.8 38 389-426 129-175 (349)
140 3lda_A DNA repair protein RAD5 97.1 0.00091 3.1E-08 74.3 8.8 110 391-500 178-326 (400)
141 2b8t_A Thymidine kinase; deoxy 97.1 0.00078 2.7E-08 69.2 7.3 69 393-462 14-101 (223)
142 3vaa_A Shikimate kinase, SK; s 97.1 0.00031 1.1E-08 69.4 4.2 32 391-422 25-56 (199)
143 2orw_A Thymidine kinase; TMTK, 97.1 0.00038 1.3E-08 68.8 4.8 30 393-422 5-37 (184)
144 2r8r_A Sensor protein; KDPD, P 97.0 0.0069 2.4E-07 62.5 13.5 33 392-424 7-42 (228)
145 1cr0_A DNA primase/helicase; R 97.0 0.0011 3.8E-08 69.4 7.9 38 387-424 31-72 (296)
146 3kb2_A SPBC2 prophage-derived 97.0 0.00046 1.6E-08 65.3 4.3 31 393-423 3-33 (173)
147 3e1s_A Exodeoxyribonuclease V, 97.0 0.0007 2.4E-08 78.5 6.6 96 392-500 205-316 (574)
148 2iyv_A Shikimate kinase, SK; t 97.0 0.00041 1.4E-08 67.2 3.8 29 393-421 4-32 (184)
149 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.003 1E-07 65.3 10.6 38 391-428 4-44 (260)
150 2q6t_A DNAB replication FORK h 97.0 0.0024 8.1E-08 71.4 10.5 39 387-425 196-238 (444)
151 1zp6_A Hypothetical protein AT 96.9 0.00053 1.8E-08 66.5 4.4 38 390-427 8-45 (191)
152 1kag_A SKI, shikimate kinase I 96.9 0.00056 1.9E-08 65.3 4.4 31 391-421 4-34 (173)
153 3iij_A Coilin-interacting nucl 96.9 0.00049 1.7E-08 66.4 3.9 31 391-421 11-41 (180)
154 1via_A Shikimate kinase; struc 96.9 0.00052 1.8E-08 66.1 4.0 29 393-421 6-34 (175)
155 2cdn_A Adenylate kinase; phosp 96.9 0.00063 2.2E-08 67.0 4.5 34 389-422 18-51 (201)
156 1zuh_A Shikimate kinase; alpha 96.9 0.00068 2.3E-08 64.7 4.5 31 392-422 8-38 (168)
157 3dm5_A SRP54, signal recogniti 96.9 0.0067 2.3E-07 68.3 13.1 73 390-462 99-194 (443)
158 2fz4_A DNA repair protein RAD2 96.9 0.0046 1.6E-07 63.2 10.9 33 393-425 110-142 (237)
159 1qf9_A UMP/CMP kinase, protein 96.9 0.0008 2.7E-08 64.8 4.9 34 389-422 4-37 (194)
160 1ly1_A Polynucleotide kinase; 96.8 0.00056 1.9E-08 65.2 3.6 30 391-420 2-32 (181)
161 1y63_A LMAJ004144AAA protein; 96.8 0.00061 2.1E-08 66.5 3.9 31 391-421 10-41 (184)
162 3cmw_A Protein RECA, recombina 96.8 0.0021 7.1E-08 82.6 9.7 113 388-500 1426-1566(1706)
163 1tev_A UMP-CMP kinase; ploop, 96.8 0.00082 2.8E-08 64.8 4.4 31 391-421 3-33 (196)
164 3bh0_A DNAB-like replicative h 96.8 0.0059 2E-07 65.2 11.3 39 387-425 64-105 (315)
165 3lw7_A Adenylate kinase relate 96.8 0.00063 2.2E-08 63.9 3.3 29 393-422 3-31 (179)
166 3t61_A Gluconokinase; PSI-biol 96.8 0.00093 3.2E-08 65.8 4.5 31 391-421 18-48 (202)
167 3jvv_A Twitching mobility prot 96.7 0.0036 1.2E-07 68.5 9.3 95 393-504 125-233 (356)
168 2c95_A Adenylate kinase 1; tra 96.7 0.00082 2.8E-08 65.2 3.9 32 391-422 9-40 (196)
169 1g41_A Heat shock protein HSLU 96.7 0.0095 3.3E-07 67.1 13.0 94 437-534 239-346 (444)
170 2pez_A Bifunctional 3'-phospho 96.7 0.0011 3.8E-08 64.0 4.6 38 389-426 3-43 (179)
171 1e6c_A Shikimate kinase; phosp 96.7 0.001 3.5E-08 63.3 4.3 30 392-421 3-32 (173)
172 2ze6_A Isopentenyl transferase 96.7 0.00097 3.3E-08 69.0 4.3 32 393-424 3-34 (253)
173 1vma_A Cell division protein F 96.7 0.012 4E-07 63.1 12.8 73 388-460 101-196 (306)
174 2vli_A Antibiotic resistance p 96.7 0.00081 2.8E-08 64.6 3.4 30 391-420 5-34 (183)
175 3cm0_A Adenylate kinase; ATP-b 96.7 0.001 3.5E-08 64.2 3.9 30 392-421 5-34 (186)
176 1aky_A Adenylate kinase; ATP:A 96.7 0.0013 4.4E-08 65.8 4.7 32 391-422 4-35 (220)
177 2ius_A DNA translocase FTSK; n 96.6 0.0074 2.5E-07 69.1 11.5 75 451-534 297-374 (512)
178 2bwj_A Adenylate kinase 5; pho 96.6 0.00095 3.2E-08 64.9 3.6 31 391-421 12-42 (199)
179 2iut_A DNA translocase FTSK; n 96.6 0.0083 2.8E-07 69.5 11.9 74 452-534 345-420 (574)
180 3dl0_A Adenylate kinase; phosp 96.6 0.0011 3.7E-08 65.9 3.7 30 393-422 2-31 (216)
181 1zd8_A GTP:AMP phosphotransfer 96.6 0.001 3.5E-08 66.9 3.6 33 390-422 6-38 (227)
182 2i3b_A HCR-ntpase, human cance 96.6 0.0046 1.6E-07 61.5 8.2 23 393-415 3-25 (189)
183 3fb4_A Adenylate kinase; psych 96.6 0.0011 3.9E-08 65.6 3.7 30 393-422 2-31 (216)
184 1kht_A Adenylate kinase; phosp 96.6 0.0013 4.3E-08 63.4 3.8 25 392-416 4-28 (192)
185 1ukz_A Uridylate kinase; trans 96.6 0.0013 4.5E-08 64.6 3.9 32 391-422 15-46 (203)
186 3be4_A Adenylate kinase; malar 96.5 0.0014 4.7E-08 65.7 3.9 31 392-422 6-36 (217)
187 2pt5_A Shikimate kinase, SK; a 96.5 0.0018 6.1E-08 61.4 4.5 29 393-421 2-30 (168)
188 1ak2_A Adenylate kinase isoenz 96.5 0.0019 6.4E-08 65.4 4.8 32 391-422 16-47 (233)
189 3tlx_A Adenylate kinase 2; str 96.5 0.0014 4.7E-08 67.3 3.9 33 390-422 28-60 (243)
190 1knq_A Gluconate kinase; ALFA/ 96.5 0.0022 7.4E-08 61.5 4.7 30 392-421 9-38 (175)
191 4eun_A Thermoresistant glucoki 96.4 0.0019 6.6E-08 63.7 4.5 36 390-427 28-63 (200)
192 1zak_A Adenylate kinase; ATP:A 96.4 0.0016 5.4E-08 65.2 3.7 32 390-421 4-35 (222)
193 3kl4_A SRP54, signal recogniti 96.4 0.011 3.7E-07 66.4 10.4 73 390-462 96-191 (433)
194 3umf_A Adenylate kinase; rossm 96.4 0.0023 7.9E-08 65.4 4.5 37 389-427 27-63 (217)
195 2pbr_A DTMP kinase, thymidylat 96.3 0.0031 1.1E-07 60.7 4.8 31 393-423 2-35 (195)
196 1q57_A DNA primase/helicase; d 96.3 0.013 4.3E-07 66.4 10.5 39 387-425 238-280 (503)
197 3crm_A TRNA delta(2)-isopenten 96.3 0.0026 9E-08 68.8 4.7 36 390-425 4-39 (323)
198 4gp7_A Metallophosphoesterase; 96.3 0.0082 2.8E-07 58.0 7.7 19 392-410 10-28 (171)
199 2px0_A Flagellar biosynthesis 96.3 0.028 9.5E-07 59.7 12.4 37 390-426 104-144 (296)
200 1cke_A CK, MSSA, protein (cyti 96.3 0.0029 1E-07 62.9 4.6 30 392-421 6-35 (227)
201 3bgw_A DNAB-like replicative h 96.3 0.012 4.3E-07 65.9 10.1 39 387-425 193-234 (444)
202 1e4v_A Adenylate kinase; trans 96.2 0.003 1E-07 62.9 4.3 30 393-422 2-31 (214)
203 2eyu_A Twitching motility prot 96.2 0.0056 1.9E-07 63.9 6.4 67 393-460 27-108 (261)
204 3uie_A Adenylyl-sulfate kinase 96.2 0.0037 1.3E-07 61.6 4.8 37 390-426 24-63 (200)
205 1w36_D RECD, exodeoxyribonucle 96.2 0.014 4.6E-07 68.1 10.3 23 392-414 165-187 (608)
206 3ake_A Cytidylate kinase; CMP 96.2 0.0037 1.3E-07 61.1 4.8 30 393-422 4-33 (208)
207 2jaq_A Deoxyguanosine kinase; 96.2 0.003 1E-07 61.4 4.0 29 393-421 2-30 (205)
208 2if2_A Dephospho-COA kinase; a 96.2 0.0023 7.9E-08 62.8 3.2 29 393-422 3-31 (204)
209 1nks_A Adenylate kinase; therm 96.2 0.0019 6.5E-08 62.1 2.5 34 393-426 3-39 (194)
210 1g5t_A COB(I)alamin adenosyltr 96.1 0.014 4.8E-07 58.8 8.9 115 393-521 30-177 (196)
211 2v54_A DTMP kinase, thymidylat 96.1 0.0039 1.3E-07 60.9 4.6 33 391-423 4-37 (204)
212 3sr0_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 63.5 4.2 28 394-421 3-30 (206)
213 2ewv_A Twitching motility prot 96.1 0.0064 2.2E-07 66.7 6.8 71 390-460 135-219 (372)
214 2bbw_A Adenylate kinase 4, AK4 96.1 0.0039 1.3E-07 63.5 4.6 31 391-421 27-57 (246)
215 2z0h_A DTMP kinase, thymidylat 96.1 0.0047 1.6E-07 59.8 4.8 30 394-423 3-35 (197)
216 4a1f_A DNAB helicase, replicat 96.1 0.0047 1.6E-07 67.2 5.2 39 387-425 42-83 (338)
217 1uf9_A TT1252 protein; P-loop, 96.0 0.0044 1.5E-07 60.3 4.5 30 391-421 8-37 (203)
218 2xb4_A Adenylate kinase; ATP-b 96.0 0.0039 1.3E-07 62.8 4.2 29 393-421 2-30 (223)
219 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0021 7.1E-08 70.5 2.2 29 393-421 26-54 (359)
220 1m7g_A Adenylylsulfate kinase; 96.0 0.0095 3.2E-07 59.2 6.8 38 390-427 24-65 (211)
221 1jjv_A Dephospho-COA kinase; P 96.0 0.0042 1.4E-07 61.2 4.1 29 392-421 3-31 (206)
222 2grj_A Dephospho-COA kinase; T 96.0 0.0062 2.1E-07 60.7 5.3 35 393-429 14-48 (192)
223 1uj2_A Uridine-cytidine kinase 96.0 0.0059 2E-07 62.6 5.2 39 390-428 21-67 (252)
224 3b6e_A Interferon-induced heli 95.9 0.015 5.1E-07 56.7 7.7 23 392-414 49-71 (216)
225 1ex7_A Guanylate kinase; subst 95.8 0.006 2.1E-07 60.8 4.4 24 392-415 2-25 (186)
226 1tf7_A KAIC; homohexamer, hexa 95.8 0.039 1.3E-06 62.9 11.7 110 391-505 39-188 (525)
227 1tf7_A KAIC; homohexamer, hexa 95.8 0.042 1.4E-06 62.6 11.9 72 392-463 282-384 (525)
228 2plr_A DTMP kinase, probable t 95.8 0.0055 1.9E-07 59.8 3.9 31 391-421 4-36 (213)
229 2wwf_A Thymidilate kinase, put 95.8 0.0027 9.1E-08 62.4 1.6 28 391-418 10-37 (212)
230 3r20_A Cytidylate kinase; stru 95.8 0.0066 2.2E-07 62.7 4.5 31 391-421 9-39 (233)
231 2gxq_A Heat resistant RNA depe 95.7 0.033 1.1E-06 54.2 9.2 17 392-408 39-55 (207)
232 1nn5_A Similar to deoxythymidy 95.7 0.0033 1.1E-07 61.8 1.9 26 391-416 9-34 (215)
233 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0041 1.4E-07 67.1 2.6 70 392-461 172-251 (330)
234 1ltq_A Polynucleotide kinase; 95.6 0.0061 2.1E-07 63.6 3.9 30 391-420 2-32 (301)
235 4g1u_C Hemin import ATP-bindin 95.6 0.03 1E-06 58.6 9.0 24 392-415 38-61 (266)
236 3nwj_A ATSK2; P loop, shikimat 95.6 0.0069 2.4E-07 63.0 4.0 30 392-421 49-78 (250)
237 2qor_A Guanylate kinase; phosp 95.6 0.0083 2.9E-07 59.3 4.3 27 390-416 11-37 (204)
238 2h92_A Cytidylate kinase; ross 95.6 0.0081 2.8E-07 59.6 4.2 30 392-421 4-33 (219)
239 2yvu_A Probable adenylyl-sulfa 95.6 0.01 3.4E-07 57.5 4.8 36 390-425 12-50 (186)
240 3c8u_A Fructokinase; YP_612366 95.5 0.011 3.7E-07 58.7 5.1 26 391-416 22-47 (208)
241 3rlf_A Maltose/maltodextrin im 95.5 0.015 5.1E-07 64.3 6.6 23 393-415 31-53 (381)
242 1vht_A Dephospho-COA kinase; s 95.5 0.0091 3.1E-07 59.4 4.4 30 391-421 4-33 (218)
243 3llm_A ATP-dependent RNA helic 95.5 0.056 1.9E-06 54.6 10.4 21 392-412 77-97 (235)
244 3gfo_A Cobalt import ATP-bindi 95.5 0.024 8.2E-07 59.7 7.7 23 393-415 36-58 (275)
245 3a8t_A Adenylate isopentenyltr 95.5 0.0068 2.3E-07 66.0 3.5 35 391-425 40-74 (339)
246 2qt1_A Nicotinamide riboside k 95.4 0.0066 2.3E-07 59.9 3.1 30 392-421 22-52 (207)
247 1q3t_A Cytidylate kinase; nucl 95.4 0.011 3.7E-07 59.9 4.6 32 390-421 15-46 (236)
248 1t6n_A Probable ATP-dependent 95.4 0.13 4.4E-06 50.7 12.4 58 355-414 14-74 (220)
249 1w4r_A Thymidine kinase; type 95.4 0.028 9.5E-07 56.7 7.5 69 392-462 21-103 (195)
250 3tau_A Guanylate kinase, GMP k 95.4 0.0097 3.3E-07 59.3 4.1 26 391-416 8-33 (208)
251 3foz_A TRNA delta(2)-isopenten 95.4 0.0098 3.3E-07 64.1 4.4 38 389-426 8-45 (316)
252 3zvl_A Bifunctional polynucleo 95.3 0.014 4.8E-07 64.8 5.6 37 389-427 256-292 (416)
253 3fvq_A Fe(3+) IONS import ATP- 95.3 0.032 1.1E-06 61.1 8.1 23 393-415 32-54 (359)
254 1hv8_A Putative ATP-dependent 95.3 0.074 2.5E-06 55.7 10.6 58 355-414 6-67 (367)
255 4e22_A Cytidylate kinase; P-lo 95.2 0.013 4.5E-07 60.3 4.7 30 392-421 28-57 (252)
256 2f6r_A COA synthase, bifunctio 95.2 0.0093 3.2E-07 62.6 3.5 30 391-421 75-104 (281)
257 3e70_C DPA, signal recognition 95.1 0.09 3.1E-06 56.7 11.0 27 389-415 127-153 (328)
258 1x6v_B Bifunctional 3'-phospho 95.1 0.03 1E-06 65.7 7.7 38 390-427 51-91 (630)
259 2v3c_C SRP54, signal recogniti 95.1 0.062 2.1E-06 60.2 10.0 36 390-425 98-136 (432)
260 2j41_A Guanylate kinase; GMP, 95.1 0.013 4.4E-07 57.1 4.0 25 391-415 6-30 (207)
261 1vt4_I APAF-1 related killer D 95.1 0.047 1.6E-06 67.5 9.6 43 361-414 131-173 (1221)
262 1kgd_A CASK, peripheral plasma 95.1 0.014 4.7E-07 56.7 4.1 25 392-416 6-30 (180)
263 1rz3_A Hypothetical protein rb 95.1 0.037 1.3E-06 54.6 7.3 36 391-426 22-60 (201)
264 2axn_A 6-phosphofructo-2-kinas 95.1 0.039 1.3E-06 63.2 8.4 39 390-428 34-75 (520)
265 1z47_A CYSA, putative ABC-tran 95.1 0.061 2.1E-06 58.8 9.5 23 393-415 43-65 (355)
266 2bdt_A BH3686; alpha-beta prot 95.1 0.015 5.1E-07 56.3 4.2 34 393-427 4-37 (189)
267 1qde_A EIF4A, translation init 95.0 0.14 4.9E-06 50.5 11.2 52 354-407 13-67 (224)
268 3ney_A 55 kDa erythrocyte memb 95.0 0.017 5.9E-07 58.1 4.4 26 391-416 19-44 (197)
269 2yyz_A Sugar ABC transporter, 95.0 0.066 2.3E-06 58.6 9.4 23 393-415 31-53 (359)
270 3tui_C Methionine import ATP-b 94.9 0.069 2.3E-06 58.7 9.4 23 393-415 56-78 (366)
271 3d3q_A TRNA delta(2)-isopenten 94.9 0.015 5.2E-07 63.3 4.1 32 392-423 8-39 (340)
272 1ls1_A Signal recognition part 94.9 0.12 4.1E-06 54.7 11.0 35 390-424 97-134 (295)
273 1v43_A Sugar-binding transport 94.9 0.038 1.3E-06 60.8 7.3 23 393-415 39-61 (372)
274 1xx6_A Thymidine kinase; NESG, 94.9 0.031 1.1E-06 55.8 6.0 71 392-463 9-94 (191)
275 2pl3_A Probable ATP-dependent 94.9 0.095 3.3E-06 52.4 9.7 53 354-408 24-79 (236)
276 1zu4_A FTSY; GTPase, signal re 94.8 0.059 2E-06 57.9 8.6 39 388-426 102-143 (320)
277 3fdi_A Uncharacterized protein 94.8 0.018 6.2E-07 57.5 4.2 28 393-420 8-35 (201)
278 2it1_A 362AA long hypothetical 94.8 0.067 2.3E-06 58.6 9.0 23 393-415 31-53 (362)
279 1p9r_A General secretion pathw 94.8 0.069 2.4E-06 59.6 9.2 94 354-460 143-246 (418)
280 3asz_A Uridine kinase; cytidin 94.8 0.016 5.5E-07 57.0 3.6 31 391-421 6-38 (211)
281 2yhs_A FTSY, cell division pro 94.7 0.11 3.6E-06 59.4 10.6 28 388-415 290-317 (503)
282 3iuy_A Probable ATP-dependent 94.7 0.053 1.8E-06 54.0 7.3 55 353-409 17-75 (228)
283 2xxa_A Signal recognition part 94.7 0.29 9.9E-06 54.8 13.9 73 389-461 98-194 (433)
284 3tr0_A Guanylate kinase, GMP k 94.7 0.02 6.9E-07 55.8 4.0 24 392-415 8-31 (205)
285 3fe2_A Probable ATP-dependent 94.6 0.072 2.4E-06 53.8 8.1 54 353-408 27-83 (242)
286 3exa_A TRNA delta(2)-isopenten 94.6 0.019 6.6E-07 62.0 4.0 33 392-424 4-36 (322)
287 1g29_1 MALK, maltose transport 94.6 0.041 1.4E-06 60.4 6.6 23 393-415 31-53 (372)
288 3a00_A Guanylate kinase, GMP k 94.5 0.021 7.2E-07 55.6 3.6 25 392-416 2-26 (186)
289 2qmh_A HPR kinase/phosphorylas 94.4 0.018 6.2E-07 58.4 3.1 31 391-422 34-64 (205)
290 2oap_1 GSPE-2, type II secreti 94.4 0.024 8.3E-07 64.8 4.5 69 392-460 261-343 (511)
291 1j8m_F SRP54, signal recogniti 94.4 0.12 4.2E-06 54.8 9.7 36 391-426 98-136 (297)
292 2j37_W Signal recognition part 94.3 0.22 7.4E-06 56.9 12.0 36 389-424 99-137 (504)
293 2xau_A PRE-mRNA-splicing facto 94.3 0.082 2.8E-06 63.3 8.8 23 392-414 110-132 (773)
294 1odf_A YGR205W, hypothetical 3 94.1 0.023 7.8E-07 60.3 3.2 28 389-416 29-56 (290)
295 4b3f_X DNA-binding protein smu 94.1 0.24 8.1E-06 57.8 11.9 33 393-425 207-242 (646)
296 3thx_B DNA mismatch repair pro 94.0 0.11 3.6E-06 63.6 9.0 23 391-413 673-695 (918)
297 1vec_A ATP-dependent RNA helic 93.9 0.22 7.6E-06 48.3 9.7 18 392-409 41-58 (206)
298 3pey_A ATP-dependent RNA helic 93.9 0.37 1.3E-05 50.9 12.1 21 391-411 44-64 (395)
299 1c9k_A COBU, adenosylcobinamid 93.9 0.035 1.2E-06 55.2 3.9 32 394-426 2-33 (180)
300 3eph_A TRNA isopentenyltransfe 93.9 0.03 1E-06 62.3 3.7 33 392-424 3-35 (409)
301 1lvg_A Guanylate kinase, GMP k 93.9 0.03 1E-06 55.3 3.4 26 391-416 4-29 (198)
302 1xti_A Probable ATP-dependent 93.8 0.59 2E-05 49.5 13.6 56 356-413 9-67 (391)
303 2j9r_A Thymidine kinase; TK1, 93.8 0.071 2.4E-06 54.4 5.9 30 394-423 31-63 (214)
304 3bor_A Human initiation factor 93.8 0.15 5E-06 51.4 8.3 54 353-408 28-84 (237)
305 3b9q_A Chloroplast SRP recepto 93.7 0.074 2.5E-06 56.6 6.2 28 388-415 97-124 (302)
306 3thx_A DNA mismatch repair pro 93.6 0.16 5.4E-06 62.2 9.5 22 392-413 663-684 (934)
307 1m8p_A Sulfate adenylyltransfe 93.6 0.11 3.6E-06 60.3 7.7 39 390-428 395-437 (573)
308 2j0s_A ATP-dependent RNA helic 93.5 0.28 9.5E-06 52.7 10.5 56 354-411 36-94 (410)
309 3p32_A Probable GTPase RV1496/ 93.5 0.28 9.7E-06 52.9 10.6 33 391-423 79-114 (355)
310 3hdt_A Putative kinase; struct 93.5 0.043 1.5E-06 56.1 3.7 29 393-421 16-44 (223)
311 2jeo_A Uridine-cytidine kinase 93.5 0.047 1.6E-06 55.6 4.1 27 392-418 26-52 (245)
312 3gmt_A Adenylate kinase; ssgci 93.5 0.049 1.7E-06 56.1 4.2 28 394-421 11-38 (230)
313 3nh6_A ATP-binding cassette SU 93.5 0.13 4.4E-06 55.0 7.6 26 390-415 79-104 (306)
314 1z6g_A Guanylate kinase; struc 93.5 0.043 1.5E-06 55.2 3.7 24 392-415 24-47 (218)
315 1gtv_A TMK, thymidylate kinase 93.4 0.021 7E-07 56.1 1.2 24 393-416 2-25 (214)
316 1wp9_A ATP-dependent RNA helic 93.4 0.26 8.8E-06 53.0 9.9 32 393-424 25-60 (494)
317 3lxw_A GTPase IMAP family memb 93.3 0.25 8.6E-06 50.5 9.2 25 391-415 21-45 (247)
318 1s2m_A Putative ATP-dependent 93.3 0.36 1.2E-05 51.6 10.8 57 354-412 20-79 (400)
319 3lnc_A Guanylate kinase, GMP k 93.3 0.031 1.1E-06 56.1 2.3 24 392-415 28-52 (231)
320 2ffh_A Protein (FFH); SRP54, s 93.2 0.83 2.8E-05 51.0 13.9 36 390-425 97-135 (425)
321 1znw_A Guanylate kinase, GMP k 93.2 0.054 1.8E-06 53.6 3.8 25 392-416 21-45 (207)
322 2gza_A Type IV secretion syste 93.2 0.098 3.3E-06 56.9 6.2 69 392-460 176-262 (361)
323 1a7j_A Phosphoribulokinase; tr 93.1 0.04 1.4E-06 58.2 2.9 37 392-428 6-45 (290)
324 2og2_A Putative signal recogni 93.1 0.1 3.5E-06 57.1 6.1 28 388-415 154-181 (359)
325 1q0u_A Bstdead; DEAD protein, 93.0 0.25 8.4E-06 48.8 8.4 17 392-408 42-58 (219)
326 1bif_A 6-phosphofructo-2-kinas 93.0 0.19 6.5E-06 56.4 8.5 35 390-424 38-75 (469)
327 3ozx_A RNAse L inhibitor; ATP 93.0 0.2 6.7E-06 57.7 8.7 24 392-415 295-318 (538)
328 1htw_A HI0065; nucleotide-bind 93.0 0.069 2.3E-06 51.5 4.2 23 393-415 35-57 (158)
329 3tqc_A Pantothenate kinase; bi 93.0 0.18 6E-06 54.4 7.7 28 389-416 90-117 (321)
330 3eiq_A Eukaryotic initiation f 92.9 0.53 1.8E-05 50.3 11.5 53 355-409 40-95 (414)
331 3vkw_A Replicase large subunit 92.8 0.14 4.7E-06 57.7 6.9 23 392-414 162-184 (446)
332 1wb9_A DNA mismatch repair pro 92.8 0.29 9.9E-06 58.9 10.1 23 392-414 608-630 (800)
333 2v9p_A Replication protein E1; 92.8 0.066 2.3E-06 57.3 4.1 29 388-416 123-151 (305)
334 4eaq_A DTMP kinase, thymidylat 92.8 0.071 2.4E-06 54.2 4.2 31 392-422 27-59 (229)
335 2z0m_A 337AA long hypothetical 92.7 0.27 9.3E-06 50.8 8.5 33 392-424 32-64 (337)
336 1sky_E F1-ATPase, F1-ATP synth 92.7 0.31 1.1E-05 55.2 9.6 23 393-415 153-175 (473)
337 3fmo_B ATP-dependent RNA helic 92.5 0.97 3.3E-05 47.5 12.7 54 353-408 90-148 (300)
338 2ged_A SR-beta, signal recogni 92.5 0.12 4.2E-06 49.3 5.2 25 391-415 48-72 (193)
339 1sq5_A Pantothenate kinase; P- 92.5 0.068 2.3E-06 56.7 3.7 26 391-416 80-105 (308)
340 3tqf_A HPR(Ser) kinase; transf 92.4 0.084 2.9E-06 52.5 4.0 28 392-420 17-44 (181)
341 1s96_A Guanylate kinase, GMP k 92.4 0.08 2.8E-06 53.7 4.0 25 392-416 17-41 (219)
342 2fwr_A DNA repair protein RAD2 92.4 0.23 7.9E-06 54.9 8.0 33 393-425 110-142 (472)
343 3qf4_B Uncharacterized ABC tra 92.4 0.25 8.7E-06 57.2 8.6 27 389-415 379-405 (598)
344 3fht_A ATP-dependent RNA helic 92.4 0.65 2.2E-05 49.5 11.3 54 353-408 23-81 (412)
345 2ocp_A DGK, deoxyguanosine kin 92.2 0.091 3.1E-06 53.1 4.0 26 391-416 2-27 (241)
346 2zj8_A DNA helicase, putative 92.1 0.42 1.4E-05 56.2 10.2 18 391-408 39-56 (720)
347 3ly5_A ATP-dependent RNA helic 92.1 0.35 1.2E-05 49.6 8.4 18 392-409 92-109 (262)
348 1np6_A Molybdopterin-guanine d 92.0 0.098 3.3E-06 51.3 3.9 26 390-415 5-30 (174)
349 3fmp_B ATP-dependent RNA helic 92.0 0.67 2.3E-05 51.3 11.1 54 353-408 90-148 (479)
350 2orv_A Thymidine kinase; TP4A 92.0 0.32 1.1E-05 50.2 7.8 91 392-501 20-125 (234)
351 2oxc_A Probable ATP-dependent 91.9 0.5 1.7E-05 47.1 9.1 53 354-408 23-78 (230)
352 1ewq_A DNA mismatch repair pro 91.9 0.3 1E-05 58.5 8.7 23 392-414 577-599 (765)
353 1p5z_B DCK, deoxycytidine kina 91.9 0.047 1.6E-06 56.1 1.5 31 390-420 23-54 (263)
354 1fuu_A Yeast initiation factor 91.8 0.36 1.2E-05 51.2 8.4 53 354-408 20-75 (394)
355 4a82_A Cystic fibrosis transme 91.8 0.35 1.2E-05 55.7 8.9 25 391-415 367-391 (578)
356 3ber_A Probable ATP-dependent 91.8 0.63 2.1E-05 47.3 9.8 53 354-408 42-97 (249)
357 3aez_A Pantothenate kinase; tr 91.8 0.1 3.6E-06 55.7 4.1 27 389-415 88-114 (312)
358 3dz8_A RAS-related protein RAB 91.6 0.71 2.4E-05 44.1 9.5 23 393-415 25-47 (191)
359 1rj9_A FTSY, signal recognitio 91.5 0.12 4.2E-06 55.0 4.2 26 390-415 101-126 (304)
360 3cr8_A Sulfate adenylyltranfer 91.4 0.22 7.4E-06 57.6 6.4 37 392-428 370-410 (552)
361 2qm8_A GTPase/ATPase; G protei 91.4 0.55 1.9E-05 50.6 9.3 24 392-415 56-79 (337)
362 3kta_A Chromosome segregation 91.3 0.13 4.3E-06 49.3 3.8 24 393-416 28-51 (182)
363 3oiy_A Reverse gyrase helicase 91.2 0.19 6.4E-06 54.6 5.4 20 392-411 37-56 (414)
364 3b85_A Phosphate starvation-in 91.1 0.087 3E-06 53.0 2.5 22 393-414 24-45 (208)
365 2gks_A Bifunctional SAT/APS ki 91.1 0.36 1.2E-05 55.6 7.8 38 391-428 372-412 (546)
366 3tbk_A RIG-I helicase domain; 91.1 1.7 5.7E-05 48.2 13.1 33 392-424 20-60 (555)
367 3qf4_A ABC transporter, ATP-bi 90.9 0.68 2.3E-05 53.5 10.1 26 390-415 368-393 (587)
368 3lxx_A GTPase IMAP family memb 90.9 0.5 1.7E-05 47.4 7.9 24 392-415 30-53 (239)
369 2onk_A Molybdate/tungstate ABC 90.9 0.1 3.5E-06 53.7 2.8 24 392-415 25-48 (240)
370 3def_A T7I23.11 protein; chlor 90.9 0.89 3E-05 46.6 9.9 25 391-415 36-60 (262)
371 2pcj_A ABC transporter, lipopr 90.9 0.083 2.8E-06 53.6 2.1 23 393-415 32-54 (224)
372 2f9l_A RAB11B, member RAS onco 90.9 0.13 4.3E-06 49.9 3.3 23 393-415 7-29 (199)
373 3tif_A Uncharacterized ABC tra 90.8 0.09 3.1E-06 53.8 2.3 25 392-416 32-56 (235)
374 1xjc_A MOBB protein homolog; s 90.8 0.15 5.1E-06 50.0 3.7 32 392-423 5-39 (169)
375 1z2a_A RAS-related protein RAB 90.7 0.14 4.8E-06 47.2 3.3 23 392-414 6-28 (168)
376 2p6r_A Afuhel308 helicase; pro 90.7 0.45 1.5E-05 55.8 8.4 18 392-409 41-58 (702)
377 1oix_A RAS-related protein RAB 90.7 0.13 4.3E-06 49.9 3.1 23 393-415 31-53 (191)
378 2va8_A SSO2462, SKI2-type heli 90.6 0.67 2.3E-05 54.4 9.7 20 391-410 46-65 (715)
379 2p67_A LAO/AO transport system 90.6 0.6 2.1E-05 50.1 8.6 25 391-415 56-80 (341)
380 4a2p_A RIG-I, retinoic acid in 90.6 1.2 4E-05 49.6 11.3 33 392-424 23-63 (556)
381 2o8b_B DNA mismatch repair pro 90.6 0.79 2.7E-05 56.6 10.6 21 392-412 790-810 (1022)
382 1g8f_A Sulfate adenylyltransfe 90.5 0.16 5.5E-06 58.1 4.3 26 392-417 396-421 (511)
383 2cbz_A Multidrug resistance-as 90.5 0.098 3.4E-06 53.6 2.3 24 392-415 32-55 (237)
384 4i1u_A Dephospho-COA kinase; s 90.5 0.17 6E-06 51.3 4.1 28 393-421 11-38 (210)
385 4f4c_A Multidrug resistance pr 90.5 0.96 3.3E-05 57.3 11.6 28 389-416 442-469 (1321)
386 2dyk_A GTP-binding protein; GT 90.5 0.15 5.2E-06 46.7 3.3 23 393-415 3-25 (161)
387 4edh_A DTMP kinase, thymidylat 90.2 0.24 8.4E-06 49.9 4.8 31 392-422 7-40 (213)
388 2v6i_A RNA helicase; membrane, 90.2 0.49 1.7E-05 52.4 7.7 21 392-412 3-24 (431)
389 1nrj_B SR-beta, signal recogni 90.2 0.19 6.7E-06 49.1 4.0 24 392-415 13-36 (218)
390 3sop_A Neuronal-specific septi 90.1 0.15 5.1E-06 53.3 3.3 23 393-415 4-26 (270)
391 1sgw_A Putative ABC transporte 90.1 0.11 3.9E-06 52.5 2.3 23 393-415 37-59 (214)
392 2d2e_A SUFC protein; ABC-ATPas 90.1 0.13 4.5E-06 53.0 2.8 22 393-414 31-52 (250)
393 1b0u_A Histidine permease; ABC 90.1 0.11 3.9E-06 54.0 2.3 25 392-416 33-57 (262)
394 1g6h_A High-affinity branched- 90.1 0.11 3.9E-06 53.7 2.3 24 393-416 35-58 (257)
395 2gk6_A Regulator of nonsense t 90.0 0.14 4.9E-06 59.6 3.4 32 393-424 197-232 (624)
396 1mv5_A LMRA, multidrug resista 90.0 0.12 4E-06 53.1 2.3 24 392-415 29-52 (243)
397 2ce2_X GTPase HRAS; signaling 90.0 0.17 5.8E-06 46.2 3.2 23 393-415 5-27 (166)
398 1lw7_A Transcriptional regulat 90.0 0.15 5.1E-06 55.2 3.2 27 392-418 171-197 (365)
399 1kao_A RAP2A; GTP-binding prot 89.9 0.18 6.1E-06 46.2 3.3 23 393-415 5-27 (167)
400 2zu0_C Probable ATP-dependent 89.9 0.14 4.7E-06 53.4 2.8 23 392-414 47-69 (267)
401 1ji0_A ABC transporter; ATP bi 89.9 0.12 4.2E-06 52.9 2.3 24 393-416 34-57 (240)
402 2ff7_A Alpha-hemolysin translo 89.7 0.13 4.3E-06 53.1 2.3 24 392-415 36-59 (247)
403 2pze_A Cystic fibrosis transme 89.7 0.13 4.3E-06 52.4 2.3 24 392-415 35-58 (229)
404 1u8z_A RAS-related protein RAL 89.7 0.19 6.6E-06 46.0 3.3 24 392-415 5-28 (168)
405 1ek0_A Protein (GTP-binding pr 89.6 0.2 6.8E-06 46.2 3.3 23 393-415 5-27 (170)
406 2olj_A Amino acid ABC transpor 89.5 0.13 4.6E-06 53.6 2.3 25 392-416 51-75 (263)
407 1z0j_A RAB-22, RAS-related pro 89.4 0.2 7E-06 46.2 3.3 23 393-415 8-30 (170)
408 2qi9_C Vitamin B12 import ATP- 89.4 0.14 4.7E-06 53.0 2.3 24 393-416 28-51 (249)
409 2ghi_A Transport protein; mult 89.4 0.14 4.7E-06 53.3 2.3 25 392-416 47-71 (260)
410 1gm5_A RECG; helicase, replica 89.4 0.73 2.5E-05 55.3 8.8 35 390-424 388-425 (780)
411 2wji_A Ferrous iron transport 89.3 0.16 5.5E-06 47.7 2.6 22 393-414 5-26 (165)
412 1svi_A GTP-binding protein YSX 89.3 0.17 5.7E-06 48.3 2.7 24 391-414 23-46 (195)
413 3v9p_A DTMP kinase, thymidylat 89.3 0.24 8.2E-06 50.7 4.0 31 392-422 26-63 (227)
414 1g16_A RAS-related protein SEC 89.2 0.2 7E-06 46.2 3.2 22 393-414 5-26 (170)
415 2zej_A Dardarin, leucine-rich 89.2 0.14 4.7E-06 49.0 2.0 21 393-413 4-24 (184)
416 1wms_A RAB-9, RAB9, RAS-relate 89.2 0.22 7.4E-06 46.5 3.3 23 392-414 8-30 (177)
417 1z08_A RAS-related protein RAB 89.2 0.22 7.4E-06 46.1 3.3 23 392-414 7-29 (170)
418 2ixe_A Antigen peptide transpo 89.2 0.14 4.9E-06 53.5 2.3 25 392-416 46-70 (271)
419 2yz2_A Putative ABC transporte 89.2 0.15 5E-06 53.2 2.3 24 392-415 34-57 (266)
420 2ihy_A ABC transporter, ATP-bi 89.2 0.14 4.9E-06 53.8 2.3 24 393-416 49-72 (279)
421 1vpl_A ABC transporter, ATP-bi 89.1 0.15 5E-06 53.0 2.3 24 392-415 42-65 (256)
422 3fho_A ATP-dependent RNA helic 89.1 1.3 4.3E-05 50.0 10.1 19 391-409 158-176 (508)
423 2nzj_A GTP-binding protein REM 89.0 0.21 7.3E-06 46.4 3.1 23 392-414 5-27 (175)
424 1ky3_A GTP-binding protein YPT 89.0 0.23 7.7E-06 46.4 3.3 24 392-415 9-32 (182)
425 1r2q_A RAS-related protein RAB 89.0 0.23 7.9E-06 45.7 3.3 23 392-414 7-29 (170)
426 2f1r_A Molybdopterin-guanine d 88.9 0.13 4.6E-06 50.2 1.7 24 392-415 3-26 (171)
427 2nq2_C Hypothetical ABC transp 88.9 0.15 5.2E-06 52.7 2.2 23 393-415 33-55 (253)
428 2erx_A GTP-binding protein DI- 88.9 0.2 6.8E-06 46.2 2.8 22 393-414 5-26 (172)
429 2wsm_A Hydrogenase expression/ 88.9 0.36 1.2E-05 47.3 4.8 25 392-416 31-55 (221)
430 1c1y_A RAS-related protein RAP 88.9 0.24 8.2E-06 45.5 3.3 22 393-414 5-26 (167)
431 3bc1_A RAS-related protein RAB 88.8 0.24 8E-06 46.7 3.3 23 392-414 12-34 (195)
432 2wjg_A FEOB, ferrous iron tran 88.7 0.21 7E-06 47.4 2.8 23 392-414 8-30 (188)
433 2www_A Methylmalonic aciduria 88.7 0.62 2.1E-05 50.3 6.9 24 392-415 75-98 (349)
434 3e2i_A Thymidine kinase; Zn-bi 88.7 0.21 7.3E-06 51.1 3.1 30 393-422 30-62 (219)
435 1r8s_A ADP-ribosylation factor 88.6 0.26 8.7E-06 45.4 3.3 22 393-414 2-23 (164)
436 2qu8_A Putative nucleolar GTP- 88.6 1.8 6.1E-05 42.8 9.8 23 392-414 30-52 (228)
437 2pjz_A Hypothetical protein ST 88.5 0.17 5.8E-06 52.8 2.3 24 392-415 31-54 (263)
438 3q85_A GTP-binding protein REM 88.5 0.25 8.5E-06 45.7 3.2 21 393-413 4-24 (169)
439 2y8e_A RAB-protein 6, GH09086P 88.4 0.25 8.5E-06 46.0 3.2 22 393-414 16-37 (179)
440 1z0f_A RAB14, member RAS oncog 88.4 0.27 9.1E-06 45.8 3.3 24 392-415 16-39 (179)
441 2hxs_A RAB-26, RAS-related pro 88.4 0.24 8.1E-06 46.3 3.0 23 392-414 7-29 (178)
442 3q72_A GTP-binding protein RAD 88.4 0.23 7.7E-06 45.9 2.8 21 393-413 4-24 (166)
443 1yrb_A ATP(GTP)binding protein 88.4 0.5 1.7E-05 47.6 5.6 35 389-423 12-48 (262)
444 3t1o_A Gliding protein MGLA; G 88.3 0.26 8.9E-06 46.6 3.3 23 393-415 16-38 (198)
445 3tmk_A Thymidylate kinase; pho 88.3 0.46 1.6E-05 48.2 5.2 29 392-420 6-34 (216)
446 4dsu_A GTPase KRAS, isoform 2B 88.3 0.27 9.2E-06 46.3 3.3 24 392-415 5-28 (189)
447 3dkp_A Probable ATP-dependent 88.3 2.7 9.2E-05 41.9 10.9 17 392-408 67-83 (245)
448 3sqw_A ATP-dependent RNA helic 88.3 0.64 2.2E-05 53.2 7.0 17 391-407 60-76 (579)
449 1upt_A ARL1, ADP-ribosylation 88.3 0.32 1.1E-05 45.0 3.8 23 392-414 8-30 (171)
450 2lkc_A Translation initiation 88.2 0.29 9.8E-06 45.7 3.5 24 391-414 8-31 (178)
451 3d31_A Sulfate/molybdate ABC t 88.2 0.15 5.3E-06 55.4 1.8 23 393-415 28-50 (348)
452 2fn4_A P23, RAS-related protei 88.2 0.26 9E-06 45.9 3.1 23 392-414 10-32 (181)
453 3lv8_A DTMP kinase, thymidylat 88.1 0.29 1E-05 50.3 3.7 28 391-418 27-57 (236)
454 2a9k_A RAS-related protein RAL 88.1 0.28 9.7E-06 46.0 3.3 24 392-415 19-42 (187)
455 3con_A GTPase NRAS; structural 88.1 0.28 9.6E-06 46.6 3.3 24 392-415 22-45 (190)
456 3l9o_A ATP-dependent RNA helic 88.1 0.63 2.2E-05 57.9 7.3 32 392-423 200-234 (1108)
457 2xtp_A GTPase IMAP family memb 88.0 2.1 7.3E-05 43.2 10.1 25 391-415 22-46 (260)
458 3clv_A RAB5 protein, putative; 88.0 0.33 1.1E-05 45.8 3.8 24 391-414 7-30 (208)
459 2atv_A RERG, RAS-like estrogen 88.0 0.32 1.1E-05 46.8 3.7 24 391-414 28-51 (196)
460 2efe_B Small GTP-binding prote 87.9 0.29 1E-05 45.8 3.3 23 392-414 13-35 (181)
461 2oil_A CATX-8, RAS-related pro 87.9 0.29 1E-05 46.7 3.3 23 393-415 27-49 (193)
462 2gj8_A MNME, tRNA modification 87.9 0.25 8.7E-06 46.9 2.9 23 392-414 5-27 (172)
463 1m7b_A RND3/RHOE small GTP-bin 87.8 0.28 9.6E-06 46.7 3.2 23 392-414 8-30 (184)
464 2oca_A DAR protein, ATP-depend 87.8 2.3 7.7E-05 47.4 11.0 33 392-424 129-165 (510)
465 2bme_A RAB4A, RAS-related prot 87.8 0.28 9.7E-06 46.2 3.2 24 392-415 11-34 (186)
466 4ddu_A Reverse gyrase; topoiso 87.8 0.81 2.8E-05 57.0 8.0 20 392-411 94-113 (1104)
467 3ld9_A DTMP kinase, thymidylat 87.7 0.34 1.2E-05 49.4 3.9 27 390-416 20-46 (223)
468 3tw8_B RAS-related protein RAB 87.7 0.28 9.4E-06 45.8 3.0 22 392-413 10-31 (181)
469 2wjy_A Regulator of nonsense t 87.7 0.26 8.7E-06 59.4 3.4 22 393-414 373-394 (800)
470 1oyw_A RECQ helicase, ATP-depe 87.6 0.69 2.4E-05 52.6 6.7 21 392-412 41-61 (523)
471 3gd7_A Fusion complex of cysti 87.5 0.23 7.8E-06 54.9 2.6 24 392-415 48-71 (390)
472 2vp4_A Deoxynucleoside kinase; 87.5 0.34 1.1E-05 48.8 3.6 29 392-421 21-49 (230)
473 3ux8_A Excinuclease ABC, A sub 87.4 0.6 2.1E-05 54.7 6.3 20 392-411 349-368 (670)
474 2c9o_A RUVB-like 1; hexameric 87.4 0.49 1.7E-05 52.8 5.3 121 451-586 296-437 (456)
475 2g6b_A RAS-related protein RAB 87.4 0.33 1.1E-05 45.4 3.3 24 392-415 11-34 (180)
476 3kkq_A RAS-related protein M-R 87.3 0.34 1.2E-05 45.7 3.3 23 392-414 19-41 (183)
477 1nij_A Hypothetical protein YJ 87.3 0.45 1.5E-05 50.6 4.7 23 393-415 6-28 (318)
478 1oxx_K GLCV, glucose, ABC tran 87.3 0.16 5.3E-06 55.5 1.1 23 393-415 33-55 (353)
479 2npi_A Protein CLP1; CLP1-PCF1 87.1 0.28 9.7E-06 55.3 3.2 24 392-415 139-162 (460)
480 2cxx_A Probable GTP-binding pr 87.1 0.26 8.8E-06 46.6 2.4 22 393-414 3-24 (190)
481 2gf9_A RAS-related protein RAB 87.1 0.35 1.2E-05 46.1 3.3 23 393-415 24-46 (189)
482 2f7s_A C25KG, RAS-related prot 87.1 1.7 5.9E-05 42.1 8.5 22 393-414 27-48 (217)
483 4ag6_A VIRB4 ATPase, type IV s 87.0 0.55 1.9E-05 51.0 5.3 25 391-415 35-59 (392)
484 3tkl_A RAS-related protein RAB 87.0 0.35 1.2E-05 46.0 3.3 24 392-415 17-40 (196)
485 1mh1_A RAC1; GTP-binding, GTPa 87.0 0.35 1.2E-05 45.4 3.2 22 393-414 7-28 (186)
486 2b6h_A ADP-ribosylation factor 87.0 0.42 1.4E-05 46.1 3.9 23 391-413 29-51 (192)
487 2bbs_A Cystic fibrosis transme 87.0 0.23 7.7E-06 52.6 2.1 24 392-415 65-88 (290)
488 3dmq_A RNA polymerase-associat 87.0 1.3 4.3E-05 54.4 9.0 40 391-430 170-214 (968)
489 2p5s_A RAS and EF-hand domain 86.9 0.38 1.3E-05 46.4 3.6 24 391-414 28-51 (199)
490 2bov_A RAla, RAS-related prote 86.9 0.36 1.2E-05 46.3 3.3 24 392-415 15-38 (206)
491 1pui_A ENGB, probable GTP-bind 86.9 0.16 5.5E-06 49.3 0.8 23 392-414 27-49 (210)
492 1moz_A ARL1, ADP-ribosylation 86.8 0.35 1.2E-05 45.5 3.1 24 390-413 17-40 (183)
493 1ko7_A HPR kinase/phosphatase; 86.8 0.42 1.4E-05 51.4 4.0 28 392-420 145-172 (314)
494 1m2o_B GTP-binding protein SAR 86.7 0.35 1.2E-05 46.6 3.2 22 393-414 25-46 (190)
495 1x3s_A RAS-related protein RAB 86.7 0.38 1.3E-05 45.6 3.3 23 393-415 17-39 (195)
496 3pqc_A Probable GTP-binding pr 86.7 0.29 1E-05 46.3 2.6 22 393-414 25-46 (195)
497 1vg8_A RAS-related protein RAB 86.7 0.37 1.3E-05 46.3 3.3 24 392-415 9-32 (207)
498 1tq4_A IIGP1, interferon-induc 86.7 0.41 1.4E-05 53.3 4.1 22 393-414 71-92 (413)
499 2eyq_A TRCF, transcription-rep 86.7 1.6 5.4E-05 54.6 9.7 34 391-424 624-660 (1151)
500 3bwd_D RAC-like GTP-binding pr 86.5 0.47 1.6E-05 44.4 3.8 24 391-414 8-31 (182)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=5.4e-82 Score=715.93 Aligned_cols=436 Identities=52% Similarity=0.845 Sum_probs=374.0
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
.+..+|+||+|++++|+++++++.+++++..|..+|.++|+|+||+||||||||++|+++|+++++||+.++++++.+.|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCCh
Q 003807 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 507 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ 507 (794)
.|.+..+++.+|..|+...||||||||||.++.+++.. .....+++++||.+|+++..+.+++||++||+++.||+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999998877532 22346789999999999988889999999999999999
Q ss_pred hhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHH
Q 003807 508 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATEL 579 (794)
Q Consensus 508 ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl 579 (794)
+++||||||+.+.|++|+.++|.+|++.|+++.++.+++++..+|+ ||.++|++|++.|.+++...|+.+|+
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 9999999999999999999999999999999888888899999987 99999999999999999899999999
Q ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecC-CcccceeeccCCCcccccHHHHHH
Q 003807 580 EFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRG-SALGMVTQLPSSDETSVSQKQLLA 658 (794)
Q Consensus 580 ~~Ai~ri~~g~~~k~~~ls~eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg-~alG~~~~~p~~d~~~~t~~~l~~ 658 (794)
..|++++++|.+++...+++++++.+||||+|||++++.+++.+|+++++|+||| .++||++++|.+|.+.+||.+|++
T Consensus 250 ~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~ 329 (476)
T 2ce7_A 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLD 329 (476)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHHHHH
T ss_pred HHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHHHHH
Confidence 9999999999888888899999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC---------------CCChHHHHH
Q 003807 659 RLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEMQSR 723 (794)
Q Consensus 659 ~I~v~LgGraAEel~fG~~~~tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~---------------~~s~~~~~~ 723 (794)
+|++||||||||+++||+ +||||++||++||++|+.||++||||+++|++.+.. ..|+++...
T Consensus 330 ~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 407 (476)
T 2ce7_A 330 KLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASK 407 (476)
T ss_dssp HHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHH
T ss_pred HHHHHHhHHHHHhhhcCC--CCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHH
Confidence 999999999999999994 999999999999999999999999999999998753 236788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCCCCCCCchhhhhhh
Q 003807 724 IDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREGQLPEQQEELEE 789 (794)
Q Consensus 724 id~ev~~~l~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~~~~~~~~~~~~~~~~~ 789 (794)
||.||+++|+++|++|++||++||+.|++||++|+|+|||+++||++|+.+.-+.+...+++++++
T Consensus 408 ~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (476)
T 2ce7_A 408 IDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFEKVVEAAALEHHH 473 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcccccchhHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999987333344444445543
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-78 Score=691.54 Aligned_cols=421 Identities=52% Similarity=0.835 Sum_probs=395.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~v 432 (794)
+..+|+||+|++++|.++++++.+++++..|..+|.++|+|+||+||||||||+||++||++++.+|++++++++.+.+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChh
Q 003807 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (794)
Q Consensus 433 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~A 508 (794)
|....+++.+|+.++...|||+||||||.++..+... .....++++++|.+|+++..+..+++|++||+|+.||++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 9999999999999988889999999999998766431 223467899999999999888889999999999999999
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 509 LlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
++||||||++|.|++|+.++|.+||+.|+++..+.+++++..+|+ ||+++|++|++.|.+++...|+.+|++
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Confidence 999999999999999999999999999998888888999999986 999999999999999888899999999
Q ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecCCcccceeeccC-CCcccccHHHHHHH
Q 003807 581 FAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPS-SDETSVSQKQLLAR 659 (794)
Q Consensus 581 ~Ai~ri~~g~~~k~~~ls~eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg~alG~~~~~p~-~d~~~~t~~~l~~~ 659 (794)
+|++++.+|.++++..+++++++.+||||+|||++++++++.++|+++||+|||+++||++ |. ++.+++|+.+++++
T Consensus 266 ~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~--p~q~~~~~~t~~~l~~~ 343 (499)
T 2dhr_A 266 EAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM--PRREDMLHWSRKRLLDQ 343 (499)
T ss_dssp HHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH--HHHTTCCCCCHHHHHHH
T ss_pred HHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc--cchhhhhccCHHHHHHH
Confidence 9999999999888888999999999999999999999999999999999999999999987 76 78889999999999
Q ss_pred HHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC------------CCChHHHHHHHHH
Q 003807 660 LDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD------------RPSSEMQSRIDAE 727 (794)
Q Consensus 660 I~v~LgGraAEel~fG~~~~tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~------------~~s~~~~~~id~e 727 (794)
|+++|||||||+++||+ +||||++||++||++|+.||++||||+++|++.+.. ..|+++...||.|
T Consensus 344 i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 421 (499)
T 2dhr_A 344 IAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEA 421 (499)
T ss_dssp HHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHH
T ss_pred HHHHhhhHhHHHhhhcc--cCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHH
Confidence 99999999999999994 999999999999999999999999999999988753 2478899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCCC
Q 003807 728 VVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYRE 777 (794)
Q Consensus 728 v~~~l~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~~~~~ 777 (794)
|+++|+++|++|++||++||+.|++||++|+|+|||+++||++|+.+...
T Consensus 422 v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~ 471 (499)
T 2dhr_A 422 VRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPL 471 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999987643
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-48 Score=428.12 Aligned_cols=245 Identities=38% Similarity=0.632 Sum_probs=230.5
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
...+.|.++|+||.|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 34566788999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 427 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
+..+|+|++++.++.+|..|+..+||||||||||+++++|.... ....+++++||.+|||+....+|+||+|||+|
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrp 297 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRL 297 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCS
T ss_pred hhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCCh
Confidence 99999999999999999999999999999999999998875432 23467899999999999999999999999999
Q ss_pred CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCC
Q 003807 503 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKL 574 (794)
Q Consensus 503 ~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~I 574 (794)
+.||+||+||||||++|+|++||.++|.+||+.|+++.++..++|+..+|+ ||.++|++|++.|.++++..|
T Consensus 298 d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~v 377 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHV 377 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBC
T ss_pred hhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred cHHHHHHHHHHHhccccc
Q 003807 575 TATELEFAKDRILMGTER 592 (794)
Q Consensus 575 t~~dl~~Ai~ri~~g~~~ 592 (794)
+++||+.|+++++.....
T Consensus 378 t~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 378 TQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp CHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhCcccc
Confidence 999999999998765433
No 4
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2.1e-48 Score=403.93 Aligned_cols=189 Identities=40% Similarity=0.662 Sum_probs=156.7
Q ss_pred hccccccccccchhhhHHHHHHHhhhHHHhhhcCCCCcceEEEEeecCCcccceeeccCCCcccccHHHHHHHHHHHhhH
Q 003807 587 LMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGG 666 (794)
Q Consensus 587 ~~g~~~k~~~ls~eek~~~A~HEaGHAlva~~l~~~~pv~kvtI~prg~alG~~~~~p~~d~~~~t~~~l~~~I~v~LgG 666 (794)
++|.++++..+++++|+++||||||||||++++++.+||+||||+|||+++|||+++|.+|++.+||.+|+++|+|+|||
T Consensus 1 ~~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgG 80 (238)
T 2di4_A 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGG 80 (238)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHH
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCcccccC-------------CCChHHHHHHHHHHHHHHH
Q 003807 667 RVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD-------------RPSSEMQSRIDAEVVKLLR 733 (794)
Q Consensus 667 raAEel~fG~~~~tsGa~~DL~~AT~lA~~mv~~~Gms~~lg~~~~~~-------------~~s~~~~~~id~ev~~~l~ 733 (794)
||||+++||.+++||||+|||++||+||+.||++||||+++|++.+.. ..|++++..||.||+++|+
T Consensus 81 RaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~ 160 (238)
T 2di4_A 81 RAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIIT 160 (238)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHH
Confidence 999999996657999999999999999999999999999999998752 2577899999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccC
Q 003807 734 EAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPY 775 (794)
Q Consensus 734 ~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~~~ 775 (794)
++|++|++||++||+.|++||++|+++|||+++||++|+.++
T Consensus 161 ~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~ 202 (238)
T 2di4_A 161 EQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY 202 (238)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC
Confidence 999999999999999999999999999999999999999865
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-46 Score=418.80 Aligned_cols=243 Identities=37% Similarity=0.644 Sum_probs=229.6
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
..+.+.++|+||.|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||++|+|+|++++++|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 3466778999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCC
Q 003807 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (794)
..+|+|++++.++.+|..|+..+||||||||||+++.+|.... ....+++++||.+||++....+|+||+|||+|+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence 9999999999999999999999999999999999999885432 234678999999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCc
Q 003807 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLT 575 (794)
Q Consensus 504 ~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It 575 (794)
.||+||+||||||++|+|++||.++|.+||+.|+++.++..++|++.||+ ||.++|++|++.|.++++..|+
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It 412 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVT 412 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBC
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccC
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHhcccc
Q 003807 576 ATELEFAKDRILMGTE 591 (794)
Q Consensus 576 ~~dl~~Ai~ri~~g~~ 591 (794)
++||+.|++++..+..
T Consensus 413 ~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 413 AEDFKQAKERVMKNKV 428 (437)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999876543
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-46 Score=419.90 Aligned_cols=244 Identities=40% Similarity=0.644 Sum_probs=230.5
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.+.|.++|+||.|++++|++|++.|.+ +++|+.|..+|.++|+|||||||||||||++|+|+|++++++|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 356778999999999999999999888 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
.+|+|.+++.++.+|..|+..+||||||||+|+++.+|.... .....+++++|.+||++....+|+||+|||+|+.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 999999999999999999999999999999999998886432 2236788999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
||+||+||||||++|+|++|+.++|.+||+.|+++.++..++|+..||+ ||.++|++|++.|+++++..|+.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~ 440 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 440 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 9999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHhcccccc
Q 003807 577 TELEFAKDRILMGTERK 593 (794)
Q Consensus 577 ~dl~~Ai~ri~~g~~~k 593 (794)
+||..|+++++.|.++.
T Consensus 441 ~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 441 KDFLKAVDKVISGYKKF 457 (467)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhcCcccc
Confidence 99999999999987654
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-46 Score=415.05 Aligned_cols=240 Identities=38% Similarity=0.615 Sum_probs=226.2
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.+.+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||++|+|+|++++++|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 456788999999999999999997666 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccccc----chHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~----~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
.+|+|.+++.++.+|..|+..+||||||||+|+++++|..... ....++++||.+||++....+|+||||||+|+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 9999999999999999999999999999999999988854322 235788999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
||+||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||+ ||.++|++|++.|.+++...|+.
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~ 412 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKH 412 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 9999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 003807 577 TELEFAKDRILMG 589 (794)
Q Consensus 577 ~dl~~Ai~ri~~g 589 (794)
+||..|++++...
T Consensus 413 ~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 413 EDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHHHSCSSS
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987654
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-45 Score=413.41 Aligned_cols=240 Identities=40% Similarity=0.638 Sum_probs=227.3
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.+.+.++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|||||||||||||++|+|+|++++++|+.++++++.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 456778999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
++|+|.+++.++.+|..|+..+||||||||||+++.+|.... .....++++||.+|||+....+|+||+|||+|+.
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 999999999999999999999999999999999998885432 2346789999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
||+||+||||||++|+|++||.++|.+||+.|+++.++..++|+..+|+ ||.++|++|++.|.++++..|+.
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~ 412 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINP 412 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 9999999999999999999999999999999999999889999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 003807 577 TELEFAKDRILMG 589 (794)
Q Consensus 577 ~dl~~Ai~ri~~g 589 (794)
+||..|++++...
T Consensus 413 ~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 413 DDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998654
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-44 Score=405.06 Aligned_cols=239 Identities=38% Similarity=0.587 Sum_probs=225.3
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.+.+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 456778999999999999999998886 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
.+|+|.+++.++.+|..|+..+||||||||+|+++.+|.... ....+++++||.+|||+....+|+||+|||+|+.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 999999999999999999999999999999999998875432 2346889999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEcc-CCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCc
Q 003807 505 LDPALTRPGRFDRHIVVP-NPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLT 575 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~-lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It 575 (794)
||+||+||||||+.|+|| +|+.++|..||+.|+++.++..++|+..+|+ ||.++|++|++.|.++++..|+
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~ 403 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVIL 403 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 999999999999999996 8999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 003807 576 ATELEFAKDRILM 588 (794)
Q Consensus 576 ~~dl~~Ai~ri~~ 588 (794)
++||+.|+.+++.
T Consensus 404 ~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 404 QSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988654
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-40 Score=395.49 Aligned_cols=221 Identities=40% Similarity=0.717 Sum_probs=187.7
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
..+.+.++|+||.|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 3455678999999999999999999888 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC
Q 003807 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (794)
..+|+|++++.++.+|+.|+..+||||||||||+++++|+.. .+...+++++||.+|||+....+|+||||||+|+
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch
Confidence 999999999999999999999999999999999999988632 2345789999999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHh
Q 003807 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVD 569 (794)
Q Consensus 504 ~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~ 569 (794)
.||+|++||||||++|+|++||.++|.+||+.|+++.++..++|+..||+ ||.++|++|++.|.++
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 9999999999999876
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.7e-38 Score=378.23 Aligned_cols=237 Identities=41% Similarity=0.659 Sum_probs=220.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~ 430 (794)
.+.++|+||.|++++|++|++++.+ +++|+.|..+|.++|+|||||||||||||+|||++|++++++|+.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 3567999999999999999999988 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhh
Q 003807 431 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 509 (794)
Q Consensus 431 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~AL 509 (794)
|.|.+++.++.+|..|+..+||||||||||.++++|+... ....+++++||.+||++..+.+|+||+|||+|+.||++|
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHH
Confidence 9999999999999999999999999999999999886543 345788999999999999999999999999999999999
Q ss_pred cCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhC-----------
Q 003807 510 TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDG----------- 570 (794)
Q Consensus 510 lRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~----------- 570 (794)
+||||||+.|+++.||..+|.+||+.|+++..+..++|+..+|. ||.++|++|++.|.++.
T Consensus 358 rR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~ 437 (806)
T 3cf2_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (806)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCC
T ss_pred hCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999999998889999999998 99999999999988753
Q ss_pred ------CCCCcHHHHHHHHHHHhc
Q 003807 571 ------GEKLTATELEFAKDRILM 588 (794)
Q Consensus 571 ------~~~It~~dl~~Ai~ri~~ 588 (794)
...|+.+||..|+..+..
T Consensus 438 ~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 438 DAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp SHHHHHHCEECTTHHHHHHSSSSC
T ss_pred chhhhccceeeHHHHHHHHHhCCC
Confidence 135788899999887654
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=8.9e-36 Score=308.34 Aligned_cols=241 Identities=63% Similarity=0.998 Sum_probs=216.7
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
+..+..+|+||+|++++++++.+++.++.++..|..+|.+.|+++||+||||||||++|+++|++++.|++.++++++..
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.+.|.+.+.++.+|+.+....|+++||||+|.++..+... .....+.+++++..++++..+.+++||++||.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 8999999999999999999899999999999998766432 122346889999999998888899999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHH
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTAT 577 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~ 577 (794)
|++++|+|||++.+.+++|+.++|.+|++.+++..++.+++++..++. ||.+++++|+..|..++...|+.+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 243 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 243 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 999999999999999999999999999999998888888888888876 999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 003807 578 ELEFAKDRILMGT 590 (794)
Q Consensus 578 dl~~Ai~ri~~g~ 590 (794)
|++.|++++..|.
T Consensus 244 ~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 244 EFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998775
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=302.93 Aligned_cols=245 Identities=49% Similarity=0.796 Sum_probs=195.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 433 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG 433 (794)
.++|+||+|++++|+.|++++.++..+..|..+|...|+++||+||||||||++|+++|++++.+++.++++++.+.+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc-----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChh
Q 003807 434 VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (794)
Q Consensus 434 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~-----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~A 508 (794)
.+...++.+|..+....|+||||||+|.+..++... .......++.++..+++.....+++||++||.++.+|++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 889999999999999999999999999998765432 123456789999999988777899999999999999999
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCccc--HHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHH
Q 003807 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD--VKAIAR--------DLANLVNIAAIKAAVDGGEKLTATE 578 (794)
Q Consensus 509 LlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvd--l~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~d 578 (794)
++|+|||++.+++++|+.++|.+|++.+++...+..+.+ ...+++ +|.+++++|+..|.+++...|+.+|
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d 241 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCC
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 999999999999999999999999999998876654433 356665 9999999999999998889999999
Q ss_pred HHHHHHHHhccccccccccc
Q 003807 579 LEFAKDRILMGTERKTMFIS 598 (794)
Q Consensus 579 l~~Ai~ri~~g~~~k~~~ls 598 (794)
+..|+.++..+..++...++
T Consensus 242 ~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 242 FEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp HHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHhccChhhhhHhhc
Confidence 99999999888766655443
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=6.3e-35 Score=311.00 Aligned_cols=238 Identities=38% Similarity=0.664 Sum_probs=212.9
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
..+.+..+|+||+|++++++.|++.+.+ +..|+.|..+|.+.++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 3455668999999999999999999887 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC
Q 003807 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (794)
...+.|.....++.+|..++...|+||||||||.+...++.. .+...+.+++||..|+++....+++||+|||+++
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 999999999999999999999999999999999998765322 2234678899999999988888999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhC-----
Q 003807 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDG----- 570 (794)
Q Consensus 504 ~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~----- 570 (794)
.||++++|||||++.+++++|+.++|.+|++.++++..+..++++..++. ||.++|++|++.|.++.
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~ 245 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 245 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999888778899999987 99999999988877542
Q ss_pred --------------------CCCCcHHHHHHHHHHH
Q 003807 571 --------------------GEKLTATELEFAKDRI 586 (794)
Q Consensus 571 --------------------~~~It~~dl~~Ai~ri 586 (794)
...|+.+||+.|+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 246 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp --------------------CCCBCHHHHHHHHTTC
T ss_pred hhhhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 1357888888888754
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=305.62 Aligned_cols=236 Identities=42% Similarity=0.682 Sum_probs=200.9
Q ss_pred CCCCcccccCCHHHHHHHHHHH-HHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVV-EYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV-~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
+.++|+||.|.+++|++|++.+ ..+.+++.|..++..+|+|++|+||||||||+|++++|++.+.+++.+++.++...+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 4578999999999999999854 558999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc-ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhc
Q 003807 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~-~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALl 510 (794)
.|...+.++.+|+.++...||++|+||+|.+...+... .....+.+++++.+|++......++++++||+|+.||++++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~ 164 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAIL 164 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhc
Confidence 89999999999999988899999999999987655322 12234678999999999988889999999999999999999
Q ss_pred CCCccceEEEccCCCHHHHHHHHHHHhcc---CCCCCcccHHHHHH----------HHHHHHHHHHHHHHHh--------
Q 003807 511 RPGRFDRHIVVPNPDVRGRQEILELYLQD---KPLADDVDVKAIAR----------DLANLVNIAAIKAAVD-------- 569 (794)
Q Consensus 511 RpGRFdr~I~V~lPd~~eR~eILk~~l~~---~~l~~dvdl~~IAr----------DL~nlvn~Aal~Aa~~-------- 569 (794)
||||||+.|++++|+.++|.+||+.++++ ..+..++|+..+|. ||.++|++|++.|.++
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~ 244 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSG 244 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC------
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999864 34567899999985 9999999999998875
Q ss_pred ---CCCCCcHHHHHHHHHHHhc
Q 003807 570 ---GGEKLTATELEFAKDRILM 588 (794)
Q Consensus 570 ---~~~~It~~dl~~Ai~ri~~ 588 (794)
+...|+++||+.|+.++..
T Consensus 245 ~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 245 NEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp -----CCBCHHHHHHHHTTCCC
T ss_pred ccccCCeecHHHHHHHHHHhcC
Confidence 2346999999999987644
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.8e-34 Score=296.49 Aligned_cols=239 Identities=45% Similarity=0.725 Sum_probs=218.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
..+..+|+||+|++++++.|.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 44557899999999999999998876 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.+.|.....++.+|..++...|+||||||+|.+..++... .......+..++..++++....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999998766432 223467788899999988888899999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHH
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTAT 577 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~ 577 (794)
|++++|++||++.+.++.|+.++|.+|++.+++...+..++++..++. ++.++++.|...|..++...|+.+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~ 249 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMD 249 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHH
Confidence 999999999999999999999999999999999888888888998887 999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 003807 578 ELEFAKDRILMG 589 (794)
Q Consensus 578 dl~~Ai~ri~~g 589 (794)
|+..|+.++...
T Consensus 250 d~~~al~~~~~~ 261 (285)
T 3h4m_A 250 DFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=9.5e-33 Score=285.17 Aligned_cols=235 Identities=59% Similarity=0.963 Sum_probs=209.9
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
.++.+..+|+||+|.++++.++++++..+.++..+...+..+|+|++|+||||||||+|++++++..+.+++.+++.++.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34556679999999999999999999999888889999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
..+.+.....++.+|+.+....|+++||||+|.++..+... .....+.+++++.+|++......++++++||.|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 88888888889999999988889999999999998765421 12345678999999999888788999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
||++++|+|||++.+.++.|+.++|.+||+.+++...+..++++..+|. ||.+++++|+..|.+++...|+.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~ 246 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 246 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCH
Confidence 9999999999999999999999999999999998888888889998886 99999999999999988889999
Q ss_pred HHHHHHH
Q 003807 577 TELEFAK 583 (794)
Q Consensus 577 ~dl~~Ai 583 (794)
+|+++|+
T Consensus 247 ~dl~~a~ 253 (254)
T 1ixz_A 247 KDLEEAA 253 (254)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=296.01 Aligned_cols=216 Identities=36% Similarity=0.606 Sum_probs=192.9
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEeCcchh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAGSEFE 428 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-g~pfi~is~se~~ 428 (794)
+.+.++|+||+|++++|+.|++.+.+ ++.++.|.. +..+|+++|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 44567999999999999999998876 888888774 35677999999999999999999999999 8999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhccc-cCCcEEEEEEcCCCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDILD 506 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~-~~~~VIVIaATN~p~~LD 506 (794)
..+.|...+.++.+|..++...|+||||||||.+.+++.... ....+.+++++..|+++. ...+++||+|||.|+.+|
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCC
Confidence 999999999999999999999999999999999988775432 335678899999999986 367899999999999999
Q ss_pred hhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHh
Q 003807 507 PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVD 569 (794)
Q Consensus 507 ~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~ 569 (794)
++++| ||++.+++++|+.++|.+||+.++++.+.. .+.++..||+ ||.++|++|++.|.++
T Consensus 164 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 164 SAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999876654 6778888887 9999999999888875
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=8.8e-33 Score=296.85 Aligned_cols=219 Identities=36% Similarity=0.610 Sum_probs=192.3
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
+..+.+.++|+||+|++++|+.|++.+.+ ++.++.|.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34456778999999999999999998876 677777765 5677899999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc-ccchHHHHHHHHHhhhccc-cCCcEEEEEEcCCCCC
Q 003807 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDI 504 (794)
Q Consensus 427 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~-~~~~~~~LnqLL~eLDg~~-~~~~VIVIaATN~p~~ 504 (794)
+...+.|.....++.+|..++...|+||||||||.+..++... .......+++++..|+++. ...+++||+|||.|+.
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 9999999999999999999999999999999999998876433 2345778899999999884 5678999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHh
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVD 569 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~ 569 (794)
||++++| ||+..+++++|+.++|.+||+.++++.... .+.++..|++ ||.++|++|+..|.++
T Consensus 167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999877644 6678888887 9999999998888775
No 20
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.2e-31 Score=281.49 Aligned_cols=235 Identities=59% Similarity=0.963 Sum_probs=210.4
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
....+..+|+||+|.+++++++++++..+..+..+...+..+|+|++|+||||||||+|++++++..+.+++.+++.++.
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 34456789999999999999999999999988889999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc----ccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 429 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
..+.+.....+..+|+.+....|+++||||+|.++..+... .....+.+++++.+|++......++++++||.|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 88888888889999999988889999999999997655321 12346778899999999887778999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcH
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTA 576 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~ 576 (794)
||++++|++||++.+++++|+.++|.+||+.+++...+..++++..+|. ||.+++++|+..|..++...|+.
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~ 270 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 270 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCH
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 9999999999999999999999999999999998887788888998886 99999999999999988889999
Q ss_pred HHHHHHH
Q 003807 577 TELEFAK 583 (794)
Q Consensus 577 ~dl~~Ai 583 (794)
+|+++|+
T Consensus 271 ~dl~~a~ 277 (278)
T 1iy2_A 271 KDLEEAA 277 (278)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=2e-34 Score=299.16 Aligned_cols=241 Identities=53% Similarity=0.877 Sum_probs=209.9
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
++.+..+|+||+|++++++.|.+++.++..++.|..+|.+.|+++||+||||||||++|+++|++++.||+.++++++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc-----ccchHHHHHHHHHhhhccccC-CcEEEEEEcCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-----EGHTKKTLHQLLVEMDGFEQN-EGIILMAATNLPD 503 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~-----~~~~~~~LnqLL~eLDg~~~~-~~VIVIaATN~p~ 503 (794)
.+.|.+...++.+|..+....|+||||||+|.+...+... .....+.+++|+..++++... .+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 8888888888899999999899999999999998765321 122345678899999887543 4599999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCc
Q 003807 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLT 575 (794)
Q Consensus 504 ~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It 575 (794)
.+|++++|+|||+..+.+++|+.++|.+||+.+++...+..++++..+++ ||.+++++|+..|..++...|+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999998877777777776664 9999999999999888888999
Q ss_pred HHHHHHHHHHHhccc
Q 003807 576 ATELEFAKDRILMGT 590 (794)
Q Consensus 576 ~~dl~~Ai~ri~~g~ 590 (794)
.+|+..|+.++....
T Consensus 243 ~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 243 QQHLKEAVERGIAGL 257 (268)
T ss_dssp HHHHHTSCTTCCCCC
T ss_pred HHHHHHHHHHHhhcc
Confidence 999998887665543
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.98 E-value=8.2e-32 Score=306.55 Aligned_cols=234 Identities=41% Similarity=0.681 Sum_probs=212.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
...+|++|+|.+++++.|.+.+.. +++++.|..+|...|+++||+||||||||++|+++|++++.+|+.++|+++...+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 346899999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhc
Q 003807 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALl 510 (794)
.|.....++.+|..|....|+||||||||.+..++.... .....++++|+..|++.....+++||+|||+++.||++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 999999999999999999999999999999998775433 2346788999999999888889999999999999999999
Q ss_pred CCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCC----------
Q 003807 511 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGE---------- 572 (794)
Q Consensus 511 RpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~---------- 572 (794)
|+|||++.+++++|+.++|.+||+.+++...+..++++..++. ||.+++++|+..|.++...
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~ 438 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCC
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999888888899999987 9999999999999987644
Q ss_pred -------CCcHHHHHHHHHHH
Q 003807 573 -------KLTATELEFAKDRI 586 (794)
Q Consensus 573 -------~It~~dl~~Ai~ri 586 (794)
.|+++|++.|+.++
T Consensus 439 ~~~~~~~~vt~edf~~Al~~~ 459 (489)
T 3hu3_A 439 AEVMNSLAVTMDDFRWALSQS 459 (489)
T ss_dssp HHHHHHCCBCHHHHHHHHTSH
T ss_pred hhhcccCcCCHHHHHHHHHhC
Confidence 36777777776644
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.98 E-value=1.1e-31 Score=293.27 Aligned_cols=220 Identities=36% Similarity=0.612 Sum_probs=184.4
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 425 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~s 425 (794)
.+....+..+|+||+|++++++.|.+.+.+ ++.++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 344556678999999999999999998876 788888876 667889999999999999999999999999999999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhcccc-CCcEEEEEEcCCCC
Q 003807 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQ-NEGIILMAATNLPD 503 (794)
Q Consensus 426 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~~-~~~VIVIaATN~p~ 503 (794)
++...+.|.....++.+|..++...|+||||||||.+...+.... ......+++||..|+++.. ..+++||++||.|+
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 999999999999999999999999999999999999987764332 2346778999999998754 56899999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHh
Q 003807 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVD 569 (794)
Q Consensus 504 ~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~ 569 (794)
.||++++| ||++.+++++|+.++|.+||+.+++..+.. .+.++..||+ ||.++|++|++.|.++
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999877543 5778888887 9999999999998875
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=2.1e-30 Score=291.18 Aligned_cols=221 Identities=35% Similarity=0.591 Sum_probs=184.6
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEe
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRA 423 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-g~pfi~is 423 (794)
..+....+..+|+||+|++++++.|.+.+.+ ++.+..|.. +..+++++||+||||||||++|+++|+++ +.+|+.++
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 3344566778999999999999999998765 778877764 35677999999999999999999999999 89999999
Q ss_pred CcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhcccc-CCcEEEEEEcCC
Q 003807 424 GSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQ-NEGIILMAATNL 501 (794)
Q Consensus 424 ~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~~-~~~VIVIaATN~ 501 (794)
++++...+.|.....++.+|..++...|+||||||||.+.+.+.... ....+.+++||..|+++.. ..+++||+|||.
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 99999999999999999999999999999999999999987765432 3457788999999998753 578999999999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHh
Q 003807 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVD 569 (794)
Q Consensus 502 p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~ 569 (794)
|+.||++++| ||++.+.+++|+.++|..||+.++...+.. .+.++..||+ ||.++|++|++.|.++
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999876542 5678888887 9999999999888865
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=2.1e-29 Score=265.16 Aligned_cols=236 Identities=36% Similarity=0.538 Sum_probs=198.0
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
+.+..+..+|+||+|++++++.|.+.+.. +.+++.|...+ ..++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 34455667999999999999999998766 67777776654 45789999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc-cchHHHHHHHHHhhhccccC---CcEEEEEEcCCC
Q 003807 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQN---EGIILMAATNLP 502 (794)
Q Consensus 427 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~~~---~~VIVIaATN~p 502 (794)
+...+.|.+...++.+|..+....|+||||||+|.+...+.... .......+.++..++++... .+++||++||.+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 99889999999999999999999999999999999987664332 23467788899999987543 579999999999
Q ss_pred CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHhC---
Q 003807 503 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVDG--- 570 (794)
Q Consensus 503 ~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~--- 570 (794)
+.+|++++| ||+..+.+++|+.++|..|++.+++..... .+.++..+++ +|.+++++|+..+.++.
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999998765432 4456677775 99999999999988864
Q ss_pred ---------CCCCcHHHHHHHHHHH
Q 003807 571 ---------GEKLTATELEFAKDRI 586 (794)
Q Consensus 571 ---------~~~It~~dl~~Ai~ri 586 (794)
...|+.+|+..|+.++
T Consensus 248 ~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 248 QVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp ------CCCCCCCCHHHHHHHTTSC
T ss_pred hcccccccccCCcCHHHHHHHHHHc
Confidence 2579999999887653
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.4e-29 Score=270.62 Aligned_cols=237 Identities=31% Similarity=0.520 Sum_probs=200.3
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 349 ~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
....+..+|+||+|++++++.|.+.+.. +..++.|...+ ..++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 75 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l 153 (357)
T 3d8b_A 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153 (357)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence 3444567999999999999999998876 77888776654 678899999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc-ccchHHHHHHHHHhhhcccc--CCcEEEEEEcCCCCC
Q 003807 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQ--NEGIILMAATNLPDI 504 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~-~~~~~~~LnqLL~eLDg~~~--~~~VIVIaATN~p~~ 504 (794)
...+.|.....++.+|..++...|+||||||||.+...+... .......++++|..+++... ..+++||+|||.++.
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 999999999999999999999999999999999998766432 22346788899999998653 467999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHhC-----
Q 003807 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVDG----- 570 (794)
Q Consensus 505 LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~----- 570 (794)
+|++++| ||+..+++++|+.++|.+|++.+++..... .+.++..+++ ||.++|++|...+.++-
T Consensus 234 l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~ 311 (357)
T 3d8b_A 234 IDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI 311 (357)
T ss_dssp BCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---
T ss_pred CCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999 999999999999999999999998765433 4556777776 99999999998888742
Q ss_pred -------CCCCcHHHHHHHHHHHhc
Q 003807 571 -------GEKLTATELEFAKDRILM 588 (794)
Q Consensus 571 -------~~~It~~dl~~Ai~ri~~ 588 (794)
...|+.+||..|+.++..
T Consensus 312 ~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 312 ATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp -------CCCBCHHHHHHHHHHHGG
T ss_pred ccccccccCCcCHHHHHHHHHhcCC
Confidence 367999999999988754
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=271.23 Aligned_cols=238 Identities=32% Similarity=0.528 Sum_probs=192.0
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
..+....+..+|+||+|++++++.|.+.+.. +..++.|...+ ..++++||+||||||||++|+++|.+++.+|+.++|
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 3455566778999999999999999998766 56677776665 457899999999999999999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccc-ccchHHHHHHHHHhhhcccc--CCcEEEEEEcCC
Q 003807 425 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQ--NEGIILMAATNL 501 (794)
Q Consensus 425 se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~-~~~~~~~LnqLL~eLDg~~~--~~~VIVIaATN~ 501 (794)
+++...|.|.....++.+|..++...|+||||||||.+...+... .......++.|+..++++.. ..+++||+|||.
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 999999999999999999999999999999999999997765433 23356788899999998765 467999999999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHh---
Q 003807 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVD--- 569 (794)
Q Consensus 502 p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~--- 569 (794)
++.||++++| ||+..++++.|+.++|.+||+.++...... .+.++..+++ +|.++++.|+..+.++
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~ 339 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKP 339 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCC
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999 999999999999999999999998765433 3446667766 8999999999988886
Q ss_pred ---------CCCCCcHHHHHHHHHHH
Q 003807 570 ---------GGEKLTATELEFAKDRI 586 (794)
Q Consensus 570 ---------~~~~It~~dl~~Ai~ri 586 (794)
....|+.+|+..++.++
T Consensus 340 ~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 340 EQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp C---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhhccchhhcCCcCHHHHHHHHHHc
Confidence 34579999999998764
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=9.4e-29 Score=263.07 Aligned_cols=217 Identities=18% Similarity=0.235 Sum_probs=150.9
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHH----HhCCCeEEEEcCccc
Q 003807 386 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA----KKKAPCIIFIDEIDA 461 (794)
Q Consensus 386 lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~A----r~~aP~ILfIDEIDa 461 (794)
.+.+.|+++|||||||||||++|+++|++++.+|+.++++++...++|.....++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred ccccccccc---cchHHHHHHHHHhhhccc-----------cCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHH
Q 003807 462 VGSTRKQWE---GHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 527 (794)
Q Consensus 462 L~~~r~~~~---~~~~~~LnqLL~eLDg~~-----------~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~ 527 (794)
++++++... ...+...+.|+..||+.. ...+++||+|||+++.||++++||||||+.+. .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 987554221 133456788888887432 45679999999999999999999999999987 47999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHH--------HHHH--HHH-----HHHHHHHH-hCCCCCcHHHHHHHHHHHhcccc
Q 003807 528 GRQEILELYLQDKPLADDVDVKAIAR--------DLAN--LVN-----IAAIKAAV-DGGEKLTATELEFAKDRILMGTE 591 (794)
Q Consensus 528 eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~n--lvn-----~Aal~Aa~-~~~~~It~~dl~~Ai~ri~~g~~ 591 (794)
+|.+|++.++... +++...+++ +|.. .+. .+...-.+ .+.+.+ ..+++.+.
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~--------~~~~~~~~- 255 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKI--------GDKLLNSF- 255 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTC--------HHHHTSCS-
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHH--------HHHHHcCC-
Confidence 9999999888753 455555555 2211 111 11111011 111111 11222222
Q ss_pred ccccccchhhhHHHHHHHhhhHHHhh
Q 003807 592 RKTMFISEESKKLTAYHESGHAIVAF 617 (794)
Q Consensus 592 ~k~~~ls~eek~~~A~HEaGHAlva~ 617 (794)
.....+.+.+..+.++||+||+++..
T Consensus 256 ~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 256 DGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp SCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHH
Confidence 22334556677889999999999875
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=1.1e-30 Score=313.10 Aligned_cols=220 Identities=40% Similarity=0.718 Sum_probs=193.1
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
+.+..+|+|+.|++++|+.|.+.+.+ ++.+..|..++...+.++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 44567899999999999999998876 77888888889999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
.|+|.....++.+|+.++...||||||||||.+...+.... ....+++++||.+||++....+++||+|||+|+.|
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999988775432 23577899999999999888899999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhC
Q 003807 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDG 570 (794)
Q Consensus 506 D~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~ 570 (794)
|++++|||||++.|+|++|+.++|.+||+.++++.++..++++..+++ ||.++|++|+..|.++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888888887776 99999999999998765
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=9.3e-26 Score=270.62 Aligned_cols=236 Identities=42% Similarity=0.679 Sum_probs=211.0
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~ 430 (794)
.+.++|+||+|++++++.|.+.+.. +.+++.|..++...+.++||+||||||||++|+++|++++.+++.+++.++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3457899999999999999999987 899999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccccc-chHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhh
Q 003807 431 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 509 (794)
Q Consensus 431 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~-~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~AL 509 (794)
+.|.....++.+|+.+....|+++||||||.+..++..... .....+++|+..+++...+..+++|++||+++.+|+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al 357 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHH
Confidence 99999999999999999999999999999999887654332 34678889999999998888999999999999999999
Q ss_pred cCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCC---------
Q 003807 510 TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGE--------- 572 (794)
Q Consensus 510 lRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~--------- 572 (794)
.|+|||++.+.++.|+.++|.+|++.++++..+..+.++..++. ++..++++|+..+.++...
T Consensus 358 ~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~ 437 (806)
T 1ypw_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (806)
T ss_dssp TSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHC
T ss_pred hcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhcc
Confidence 99999999999999999999999999999888888888888887 8999999998888775432
Q ss_pred --------CCcHHHHHHHHHHHh
Q 003807 573 --------KLTATELEFAKDRIL 587 (794)
Q Consensus 573 --------~It~~dl~~Ai~ri~ 587 (794)
.++.+|+..++....
T Consensus 438 ~~~~~~~~~v~~~d~~~al~~~~ 460 (806)
T 1ypw_A 438 DAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp CHHHHTTCCCCTTHHHHHHHHSC
T ss_pred chhhhhhhhhhhhhhhccccccC
Confidence 356667777766543
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=2e-23 Score=234.86 Aligned_cols=164 Identities=25% Similarity=0.282 Sum_probs=131.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCcchhhhh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMF 431 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~se~~e~~ 431 (794)
...|++|+|++++++.+.+++..++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++...+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSS
T ss_pred hhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHh
Confidence 34699999999999999998876654 455678999999999999999999999999 999999999999999
Q ss_pred hhhhhHHHHHHHHHH---HhCCCeEEEEcCccccccccccccc--ch------------------HHHHHHHHHhhh--c
Q 003807 432 VGVGARRVRSLFQAA---KKKAPCIIFIDEIDAVGSTRKQWEG--HT------------------KKTLHQLLVEMD--G 486 (794)
Q Consensus 432 vG~~~~~vr~lF~~A---r~~aP~ILfIDEIDaL~~~r~~~~~--~~------------------~~~LnqLL~eLD--g 486 (794)
.|.... ++..|..| +...||||||||+|.+++++..... .. .+..+.++..++ +
T Consensus 106 ~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 106 IKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp SCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 999887 99999999 7788999999999999987754311 00 122344555554 3
Q ss_pred cccCCcEEEEEEcCCCCCCChhhcCCCccce--EEEccCCC
Q 003807 487 FEQNEGIILMAATNLPDILDPALTRPGRFDR--HIVVPNPD 525 (794)
Q Consensus 487 ~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr--~I~V~lPd 525 (794)
......++|++|||+++.+|++++||||||+ .+.++.|+
T Consensus 185 ~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~ 225 (456)
T 2c9o_A 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPK 225 (456)
T ss_dssp CCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCC
T ss_pred CCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCc
Confidence 3344456677999999999999999999999 56667774
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=1.1e-21 Score=206.95 Aligned_cols=217 Identities=21% Similarity=0.284 Sum_probs=163.2
Q ss_pred Ccc-cccCCHHHHHHHHHHHHHhcCchhhhhcCCC---CCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeC
Q 003807 356 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGK---LPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAG 424 (794)
Q Consensus 356 tFd-DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~---~PkgVLL~GPPGTGKT~LArAIA~ea-------g~pfi~is~ 424 (794)
.++ +|+|++++|+.|.+++..+..+..+...|.. .+.++||+||||||||++|+++|+.+ ..+++++++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 455 7999999999999999887666666665543 44579999999999999999999987 348999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC-
Q 003807 425 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD- 503 (794)
Q Consensus 425 se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~- 503 (794)
+++...+.|.....++.+|..+ .++||||||+|.+...++. .......++.|+..|+.. ..++++|++||.++
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMENN--RDDLVVILAGYADRM 181 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC----CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHH
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHH
Confidence 9999889998888889999887 3579999999999865432 223567888899888853 45678888988653
Q ss_pred ----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCc-ccHHHH---------------HHHHHHHHHHHH
Q 003807 504 ----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVKAI---------------ARDLANLVNIAA 563 (794)
Q Consensus 504 ----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~d-vdl~~I---------------ArDL~nlvn~Aa 563 (794)
.++++|++ ||+.++.|++|+.+++.+|++.++......-+ ..+..+ ++++.++++.|.
T Consensus 182 ~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 182 ENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 35789998 99999999999999999999999986543311 112222 236667777776
Q ss_pred HHHHHh----CCCCCcHHHHH
Q 003807 564 IKAAVD----GGEKLTATELE 580 (794)
Q Consensus 564 l~Aa~~----~~~~It~~dl~ 580 (794)
..+..+ ....++.+++.
T Consensus 260 ~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 260 LRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHh
Confidence 554433 33455555544
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.87 E-value=3.8e-21 Score=207.61 Aligned_cols=243 Identities=20% Similarity=0.288 Sum_probs=160.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCcchhhhh
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEEMF 431 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~--pfi~is~se~~e~~ 431 (794)
..+|++++|.+++++.+..+...+.. +...++++||+||||||||++|+++|++++. ||+.+++..+...+
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred CcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 34599999999999998888776654 3334589999999999999999999999974 89998876633221
Q ss_pred -------------------------------------------------hhhhhHHHHHHHHHHHh-----C----CCeE
Q 003807 432 -------------------------------------------------VGVGARRVRSLFQAAKK-----K----APCI 453 (794)
Q Consensus 432 -------------------------------------------------vG~~~~~vr~lF~~Ar~-----~----aP~I 453 (794)
.|.....++..|..+.. . .|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 12224455666655433 1 2789
Q ss_pred EEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEc-----------CCCCCCChhhcCCCccceEEEcc
Q 003807 454 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT-----------NLPDILDPALTRPGRFDRHIVVP 522 (794)
Q Consensus 454 LfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaAT-----------N~p~~LD~ALlRpGRFdr~I~V~ 522 (794)
|||||+|.+. ...++.|+..++.. ...++++++. |.+..++++|++ ||.. +.|+
T Consensus 193 l~IDEi~~l~----------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~ 257 (368)
T 3uk6_A 193 LFIDEVHMLD----------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTT 257 (368)
T ss_dssp EEEESGGGSB----------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEEC
T ss_pred EEEhhccccC----------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEec
Confidence 9999999984 35667777777653 3345555554 357889999999 8866 8999
Q ss_pred CCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcccccc
Q 003807 523 NPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERK 593 (794)
Q Consensus 523 lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g~~~k 593 (794)
+|+.+++.+|++.++...... ++..+..+++ ++.++++.|...|..++...|+.+|++.+++..+.. .+.
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~-~~~ 336 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDE-SRS 336 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCH-HHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCH-HHH
Confidence 999999999999988764432 2223444443 778899999999999999999999999999864321 111
Q ss_pred ccccchhhhHHHHHHHhhhHHHhhhcC
Q 003807 594 TMFISEESKKLTAYHESGHAIVAFNTE 620 (794)
Q Consensus 594 ~~~ls~eek~~~A~HEaGHAlva~~l~ 620 (794)
...+.+.++ ..-++|.++--...-+.
T Consensus 337 ~~~~~~~~~-~~~~~~~~~~~~~~~~~ 362 (368)
T 3uk6_A 337 TQYMKEYQD-AFLFNELKGETMDTSLE 362 (368)
T ss_dssp HHHHC----------------------
T ss_pred HHHHHHhhh-hhhhhcCCccccccchh
Confidence 122333333 34477777655544433
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=1.9e-20 Score=200.36 Aligned_cols=213 Identities=20% Similarity=0.200 Sum_probs=161.8
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
.+.....+.+|++++|.+++++.+...+...+. ....+.++||+||||||||++|+++|++++.+|+.++|..
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 344445556899999999999999888875432 2334568999999999999999999999999999999976
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc----------------C
Q 003807 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ----------------N 490 (794)
Q Consensus 427 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~----------------~ 490 (794)
+.. ...+...+.. ...+++|||||||.+.. ..++.|+..++.... .
T Consensus 91 ~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~~----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 91 IEK------SGDLAAILTN--LSEGDILFIDEIHRLSP----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp CCS------HHHHHHHHHT--CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred ccc------hhHHHHHHHh--ccCCCEEEEechhhcCH----------HHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 632 2233344432 24578999999999943 455566666654321 1
Q ss_pred CcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHH
Q 003807 491 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIA 562 (794)
Q Consensus 491 ~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~A 562 (794)
.++++|++||....++++|++ ||+.++.+++|+.+++..+++.++...... ++..+..+++ ++.++++.+
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 230 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRV 230 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 148999999999999999998 999999999999999999999998765432 2223444544 788899998
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 563 AIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 563 al~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
...+...+...|+.+++..++...
T Consensus 231 ~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 231 RDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHhhcCCccCHHHHHHHHHHh
Confidence 888888888889999999888764
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.82 E-value=3e-19 Score=189.18 Aligned_cols=206 Identities=25% Similarity=0.244 Sum_probs=153.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhh
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~v 432 (794)
.+.+|++++|.+++++.+.+.+..... ....+.++||+||||||||++|++++++++.+|+.++|+.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 345899999999999999888775432 1234568999999999999999999999999999999877632
Q ss_pred hhhhHHHHHHHHHHHh--CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc----------------cCCcEE
Q 003807 433 GVGARRVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGII 494 (794)
Q Consensus 433 G~~~~~vr~lF~~Ar~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~----------------~~~~VI 494 (794)
. .+++..... ..+++|||||+|.+.. ..+..|+..++... ...+++
T Consensus 77 ---~---~~l~~~l~~~~~~~~~l~lDEi~~l~~----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 77 ---P---GDLAAILANSLEEGDILFIDEIHRLSR----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---H---HHHHHHHTTTCCTTCEEEETTTTSCCH----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---h---HHHHHHHHHhccCCCEEEEECCccccc----------chHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1 223333322 4578999999999853 33444555554321 113578
Q ss_pred EEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHH
Q 003807 495 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKA 566 (794)
Q Consensus 495 VIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~A 566 (794)
+|++||.+..++++|.+ ||+.++.+++|+.+++.++++.++...... ++..+..++. .+.++++.+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 99999999999999987 999899999999999999999998765433 1222344443 6777887777666
Q ss_pred HHhCCCCCcHHHHHHHHHHH
Q 003807 567 AVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 567 a~~~~~~It~~dl~~Ai~ri 586 (794)
...+...|+.+++..++...
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHh
Confidence 66666789999988887654
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=2e-19 Score=188.47 Aligned_cols=176 Identities=26% Similarity=0.365 Sum_probs=128.5
Q ss_pred ccccCCHHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh-hhhhh
Q 003807 358 KDVKGCDDAKQELVEVVEY-LKNPSKFTRL-GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGV 434 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~-Lk~p~~~~~l-G~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e-~~vG~ 434 (794)
++|+|++++++.+...+.. +......... +...|.++||+||||||||++|+++|..++.+++.++|+.+.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3589999999999887754 2222111111 2345679999999999999999999999999999999998865 45554
Q ss_pred h-hHHHHHHHHHH-----HhCCCeEEEEcCcccccccccccccc--hHHHHHHHHHhhhccc--------cCCcEEEEEE
Q 003807 435 G-ARRVRSLFQAA-----KKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFE--------QNEGIILMAA 498 (794)
Q Consensus 435 ~-~~~vr~lF~~A-----r~~aP~ILfIDEIDaL~~~r~~~~~~--~~~~LnqLL~eLDg~~--------~~~~VIVIaA 498 (794)
. ...++.++..+ ....++||||||+|.+.......... .....+.|+..|++.. ...++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 3 34566666532 11235799999999997755322111 1234677888777642 2346788888
Q ss_pred ----cCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHH
Q 003807 499 ----TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILEL 535 (794)
Q Consensus 499 ----TN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~ 535 (794)
++.+..+++++++ ||+.++.|++|+.+++.+|++.
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 5677889999997 9999999999999999999984
No 37
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=3e-20 Score=208.78 Aligned_cols=169 Identities=22% Similarity=0.231 Sum_probs=82.0
Q ss_pred ccccCCHHHHHHHHHHHHH-hcCchhhhhcCCC-CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh-hhhhh
Q 003807 358 KDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGK-LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGV 434 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~-Lk~p~~~~~lG~~-~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e-~~vG~ 434 (794)
++|+|++++|+.|...+.. ++.+..+..++.. .|+++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 3789999999999887754 4444444444333 5689999999999999999999999999999999999888 58985
Q ss_pred -hhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEE-cCCCCCCChhhcCC
Q 003807 435 -GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA-TNLPDILDPALTRP 512 (794)
Q Consensus 435 -~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaA-TN~p~~LD~ALlRp 512 (794)
....++.+|..+... +++||+|.+.... ......+++++||.+||++.....+ +++ ||+|+.||++|+||
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~--~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rg 166 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA--EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREG 166 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc--hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcC
Confidence 788999999998765 4589999885432 2233478999999999999776654 454 99999999999999
Q ss_pred CccceEEEccCCCHH-HHHHHHH
Q 003807 513 GRFDRHIVVPNPDVR-GRQEILE 534 (794)
Q Consensus 513 GRFdr~I~V~lPd~~-eR~eILk 534 (794)
||||+.|+|++|+.. .|.+|+.
T Consensus 167 gr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 167 QLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp -----------------------
T ss_pred CCcceEEEEcCCCCccchhhhhc
Confidence 999999999999987 7888763
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=7.6e-19 Score=183.12 Aligned_cols=174 Identities=22% Similarity=0.289 Sum_probs=122.4
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh-hhhhhhh
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE-EMFVGVG 435 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~-e~~vG~~ 435 (794)
.+.++|.+++.+.+.+....+.. .....+...+.++||+||||||||++|+++|.+.+.+|+.+++++.. ....+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~--~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQ--QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHH--HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHH--HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45688988886666663222211 11122456778999999999999999999999999999999887532 1112223
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc-cCCcEEEEEEcCCCCCCCh-hhcCCC
Q 003807 436 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDILDP-ALTRPG 513 (794)
Q Consensus 436 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~-~~~~VIVIaATN~p~~LD~-ALlRpG 513 (794)
...++.+|..+....+++|||||||.+.+.+..........++.|+..+++.. ....++||+|||.++.+++ .+. +
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~--~ 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML--N 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT--T
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh--c
Confidence 36778899999888899999999999976554333334566677777777654 3457889999999988887 444 4
Q ss_pred ccceEEEccCCCH-HHHHHHHH
Q 003807 514 RFDRHIVVPNPDV-RGRQEILE 534 (794)
Q Consensus 514 RFdr~I~V~lPd~-~eR~eILk 534 (794)
||+..+.+|+++. ++...++.
T Consensus 188 rf~~~i~~p~l~~r~~i~~i~~ 209 (272)
T 1d2n_A 188 AFSTTIHVPNIATGEQLLEALE 209 (272)
T ss_dssp TSSEEEECCCEEEHHHHHHHHH
T ss_pred ccceEEcCCCccHHHHHHHHHH
Confidence 9999988866655 33333443
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=7.1e-19 Score=202.46 Aligned_cols=215 Identities=22% Similarity=0.255 Sum_probs=144.1
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh------
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE------ 429 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e------ 429 (794)
-.+|++|++++++.+.+.+..-.-.. .. .+..++|+||||||||++|+++|+.++.++..++++.+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 46789999999999977654311100 11 3458999999999999999999999999999999877543
Q ss_pred ---hhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc-------------CCcE
Q 003807 430 ---MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-------------NEGI 493 (794)
Q Consensus 430 ---~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~-------------~~~V 493 (794)
.|+|.....+...|..+....| |+||||||.+...+. ...++.||..||.... ..++
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp -----------CHHHHHHTTCSSSE-EEEEEESSSCC---------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc------cCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 5667777777788888766665 999999999976432 1245667777764321 1568
Q ss_pred EEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc-----CCCC---Cccc---HHHHHH---------
Q 003807 494 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-----KPLA---DDVD---VKAIAR--------- 553 (794)
Q Consensus 494 IVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~-----~~l~---~dvd---l~~IAr--------- 553 (794)
+||+|||.++.++++|++ ||+ +|.|+.|+.+++.+|++.|+.. ..+. -.++ +..++.
T Consensus 226 ~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR 302 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVR 302 (543)
T ss_dssp EEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSH
T ss_pred EEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchh
Confidence 999999999999999999 995 7999999999999999988722 2221 1122 333332
Q ss_pred ----HHHHHHHHHHHHHHHh--CCCCCcHHHHHHHHHHH
Q 003807 554 ----DLANLVNIAAIKAAVD--GGEKLTATELEFAKDRI 586 (794)
Q Consensus 554 ----DL~nlvn~Aal~Aa~~--~~~~It~~dl~~Ai~ri 586 (794)
.+.++|+.|+..+... +...|+.+++++++...
T Consensus 303 ~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 303 SLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 3445555555554443 33478999999887543
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.76 E-value=3.9e-18 Score=181.65 Aligned_cols=203 Identities=22% Similarity=0.288 Sum_probs=138.9
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
.|.....+.+|++++|++++++.|.+.+. .++.|..+|++||||||||++|+++|++++.+++++++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 45556667799999999999998888776 3456778899999999999999999999999999999877
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhC-----CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCC
Q 003807 427 FEEMFVGVGARRVRSLFQAAKKK-----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (794)
Q Consensus 427 ~~e~~vG~~~~~vr~lF~~Ar~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~ 501 (794)
.. ...++..+...... .++||||||+|.+.+ ....+.|+..++.. ..++.+|++||.
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---------~~~~~~L~~~le~~--~~~~~iI~~~n~ 145 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---------AESQRHLRSFMEAY--SSNCSIIITANN 145 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------HHHHHHHHHHHHHH--GGGCEEEEEESS
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------HHHHHHHHHHHHhC--CCCcEEEEEeCC
Confidence 53 23444444443322 568999999999952 23456666666643 345778889999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc-------cCCCC-Cc-ccHHHHHH----HHHHHHHHHHHHHHH
Q 003807 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ-------DKPLA-DD-VDVKAIAR----DLANLVNIAAIKAAV 568 (794)
Q Consensus 502 p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~-------~~~l~-~d-vdl~~IAr----DL~nlvn~Aal~Aa~ 568 (794)
+..+++++++ || .++.|++|+.++|.+|++.++. ...+. ++ ..+..+++ |++.+++.....+
T Consensus 146 ~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-- 220 (324)
T 3u61_B 146 IDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-- 220 (324)
T ss_dssp GGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG--
T ss_pred ccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh--
Confidence 9999999998 88 4799999999998776655432 22221 22 33555555 4444444433333
Q ss_pred hCCCCCcHHHHHHHHH
Q 003807 569 DGGEKLTATELEFAKD 584 (794)
Q Consensus 569 ~~~~~It~~dl~~Ai~ 584 (794)
....|+.+++..+..
T Consensus 221 -~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 -SKGVLDAGILSLVTN 235 (324)
T ss_dssp -GGTCBCC--------
T ss_pred -ccCCCCHHHHHHHhC
Confidence 235688888876654
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.76 E-value=2.5e-17 Score=161.80 Aligned_cols=196 Identities=21% Similarity=0.209 Sum_probs=137.9
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 425 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~s 425 (794)
...+.+|++++|.+++++.+.+.+.. .. +.+++|+||||||||++|++++.++ ..+++.++++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------KN-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT-----------TC-CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC-----------CC-CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 34556899999999998888777651 12 2259999999999999999999975 4678888886
Q ss_pred chhhhhhhhhhHHHHHHHHHHH------hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 426 EFEEMFVGVGARRVRSLFQAAK------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 426 e~~e~~vG~~~~~vr~lF~~Ar------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
..... ..++..+.... ...+++|+|||+|.+.. ..++.|+..++.. ..++++|++|
T Consensus 78 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~l~~~l~~~--~~~~~~i~~~ 139 (226)
T 2chg_A 78 DERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMY--SKSCRFILSC 139 (226)
T ss_dssp CTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------HHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred cccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH----------HHHHHHHHHHHhc--CCCCeEEEEe
Confidence 64321 22222222222 24678999999999843 3345555555542 3467788899
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCC
Q 003807 500 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGG 571 (794)
Q Consensus 500 N~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~ 571 (794)
|.+..+++++.+ ||. .+.+++|+.+++.++++.++...... ++..+..+++ .+.++++.++..+
T Consensus 140 ~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~----- 211 (226)
T 2chg_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG----- 211 (226)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred CChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----
Confidence 999999999998 886 89999999999999999888654332 2223444444 3444444444332
Q ss_pred CCCcHHHHHHHHH
Q 003807 572 EKLTATELEFAKD 584 (794)
Q Consensus 572 ~~It~~dl~~Ai~ 584 (794)
+.|+.+|++.++.
T Consensus 212 ~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 EVVDADTIYQITA 224 (226)
T ss_dssp SCBCHHHHHHHHH
T ss_pred ceecHHHHHHHhc
Confidence 6899999988875
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.76 E-value=7.1e-18 Score=183.47 Aligned_cols=174 Identities=24% Similarity=0.300 Sum_probs=126.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhh---hcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh-hhhhh
Q 003807 360 VKGCDDAKQELVEVVEYLKNPSKFT---RLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVG 435 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~Lk~p~~~~---~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~-~vG~~ 435 (794)
|+|++++++.+...+.......... ......+.++||+||||||||++|+++|..++.||+.++|+++... |.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 6999999999988774321111100 0112356799999999999999999999999999999999988743 77765
Q ss_pred -hHHHHHHHHHH----HhCCCeEEEEcCccccccccccccc----chHHHHHHHHHhhhccc------------------
Q 003807 436 -ARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEG----HTKKTLHQLLVEMDGFE------------------ 488 (794)
Q Consensus 436 -~~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~----~~~~~LnqLL~eLDg~~------------------ 488 (794)
...++.+|..+ ....++||||||||.+...+..... ....+++.||..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56677777765 3345789999999999876543221 12347888999998531
Q ss_pred -cCCcEEEEEEcCCC----------CC-----------------------------------CChhhcCCCccceEEEcc
Q 003807 489 -QNEGIILMAATNLP----------DI-----------------------------------LDPALTRPGRFDRHIVVP 522 (794)
Q Consensus 489 -~~~~VIVIaATN~p----------~~-----------------------------------LD~ALlRpGRFdr~I~V~ 522 (794)
...++++|+++|.. .. ++++|+. ||+.++.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 12345556665542 11 6788886 999999999
Q ss_pred CCCHHHHHHHHHH
Q 003807 523 NPDVRGRQEILEL 535 (794)
Q Consensus 523 lPd~~eR~eILk~ 535 (794)
+|+.+++.+|++.
T Consensus 255 pl~~~~~~~I~~~ 267 (363)
T 3hws_A 255 ELSEEALIQILKE 267 (363)
T ss_dssp CCCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999886
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.76 E-value=2.4e-17 Score=177.16 Aligned_cols=216 Identities=21% Similarity=0.228 Sum_probs=154.1
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcc
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE 426 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se 426 (794)
.+++++|.++..+.+...+.... ....+.+++|+||||||||++|+++++++ +.++++++|..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 45889999999888876554321 12345689999999999999999999988 88999999876
Q ss_pred hhhhh----------------hhhhhHH-HHHHHHHHHh-CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc
Q 003807 427 FEEMF----------------VGVGARR-VRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (794)
Q Consensus 427 ~~e~~----------------vG~~~~~-vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~ 488 (794)
....+ .|..... ...++..... ..|++|||||+|.+...+ .....+..++..++...
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-----~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-----GGQDLLYRITRINQELG 163 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-----THHHHHHHHHHGGGCC-
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-----CCChHHHhHhhchhhcC
Confidence 43211 1111222 3444444433 348899999999996532 13466777777666443
Q ss_pred cCCcEEEEEEcCCC---CCCChhhcCCCccce-EEEccCCCHHHHHHHHHHHhcc----CCCCCcccHHHHHH-------
Q 003807 489 QNEGIILMAATNLP---DILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQD----KPLADDVDVKAIAR------- 553 (794)
Q Consensus 489 ~~~~VIVIaATN~p---~~LD~ALlRpGRFdr-~I~V~lPd~~eR~eILk~~l~~----~~l~~dvdl~~IAr------- 553 (794)
...++++|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.++.. ..+. +..+..+++
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~G 240 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALAAREHG 240 (387)
T ss_dssp ----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHHHSSSC
T ss_pred CCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHhcc
Confidence 25678899999988 678999988 8875 8999999999999999998764 1222 222444433
Q ss_pred ---HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 003807 554 ---DLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 587 (794)
Q Consensus 554 ---DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~ 587 (794)
.+.++++.|...|..++...|+.+|+..++..+.
T Consensus 241 ~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 241 DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5668888998888888888999999999988763
No 44
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.75 E-value=9.8e-18 Score=188.22 Aligned_cols=211 Identities=19% Similarity=0.274 Sum_probs=146.5
Q ss_pred CCCccccc-CCH--HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 003807 354 VKTFKDVK-GCD--DAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 425 (794)
Q Consensus 354 ~~tFdDVv-G~d--eaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~s 425 (794)
..+|++++ |.. .+...+..+ ...+ .. +.+++|+||||||||+||+++++++ +.+++++++.
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~---a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEV---AKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHH---HHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCChhhcCCCCchHHHHHHHHHH---HhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 35899987 543 333333322 2222 12 5689999999999999999999988 8899999998
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC-
Q 003807 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI- 504 (794)
Q Consensus 426 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~- 504 (794)
++...+.+.........|.......++||||||+|.+..++ .....|+..++........+||++.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~--------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT--------GVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH--------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh--------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence 88665543332222223443333368899999999996531 233444444444334445666666665654
Q ss_pred --CChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCC--CCCcccHHHHHH-------HHHHHHHHHHHHHHHhCC
Q 003807 505 --LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKP--LADDVDVKAIAR-------DLANLVNIAAIKAAVDGG 571 (794)
Q Consensus 505 --LD~ALlRpGRFd--r~I~V~lPd~~eR~eILk~~l~~~~--l~~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~ 571 (794)
++++|++ ||+ ..+.+++|+.++|.+|++.++.... +.++ .+..|+. ++.++++.+...|...+
T Consensus 242 ~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~- 317 (440)
T 2z4s_A 242 SEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDDNLRRLRGAIIKLLVYKETTG- 317 (440)
T ss_dssp SSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCSCHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-
Confidence 7899998 886 7899999999999999999886433 3333 3566665 88899999988887666
Q ss_pred CCCcHHHHHHHHHHHh
Q 003807 572 EKLTATELEFAKDRIL 587 (794)
Q Consensus 572 ~~It~~dl~~Ai~ri~ 587 (794)
..||.++++.++....
T Consensus 318 ~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 318 KEVDLKEAILLLKDFI 333 (440)
T ss_dssp SCCCHHHHHHHTSTTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4799999998887654
No 45
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.74 E-value=7.3e-17 Score=172.42 Aligned_cols=210 Identities=22% Similarity=0.272 Sum_probs=135.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------C-------
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------P------- 418 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~-------p------- 418 (794)
+..+|++++|.+++++.+.... + .+ .+.++||+||||||||++|++++..++. +
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 4568999999999876543221 1 11 1236999999999999999999998862 2
Q ss_pred -------------------EEEEeCcchhhhhhhhhhHHHHHHHHHH---------HhCCCeEEEEcCcccccccccccc
Q 003807 419 -------------------FFYRAGSEFEEMFVGVGARRVRSLFQAA---------KKKAPCIIFIDEIDAVGSTRKQWE 470 (794)
Q Consensus 419 -------------------fi~is~se~~e~~vG~~~~~vr~lF~~A---------r~~aP~ILfIDEIDaL~~~r~~~~ 470 (794)
++.+..........|.. .+...+... ....++||||||+|.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------ 158 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------ 158 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------
Confidence 22221111111111110 011122211 011367999999999843
Q ss_pred cchHHHHHHHHHhhhcc-----------ccCCcEEEEEEcCCCC-CCChhhcCCCccceEEEccCC-CHHHHHHHHHHHh
Q 003807 471 GHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNP-DVRGRQEILELYL 537 (794)
Q Consensus 471 ~~~~~~LnqLL~eLDg~-----------~~~~~VIVIaATN~p~-~LD~ALlRpGRFdr~I~V~lP-d~~eR~eILk~~l 537 (794)
..++.|+..|+.- .....+++|+|||..+ .++++|++ ||+.++.++.| +.+++.+|++.++
T Consensus 159 ----~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 159 ----HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp ----HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 3455666655531 1123689999999754 89999999 99999999999 6777778886632
Q ss_pred c-------------------------------cCCCCCcccHHHHH-----------HHHHHHHHHHHHHHHHhCCCCCc
Q 003807 538 Q-------------------------------DKPLADDVDVKAIA-----------RDLANLVNIAAIKAAVDGGEKLT 575 (794)
Q Consensus 538 ~-------------------------------~~~l~~dvdl~~IA-----------rDL~nlvn~Aal~Aa~~~~~~It 575 (794)
. ...+. +..+..|+ |.+.++++.|...|..+++..|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~ 311 (350)
T 1g8p_A 233 TYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVG 311 (350)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred hcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 1 11111 11122222 46778888888888888888999
Q ss_pred HHHHHHHHHHHhcc
Q 003807 576 ATELEFAKDRILMG 589 (794)
Q Consensus 576 ~~dl~~Ai~ri~~g 589 (794)
.+|+..|+..++..
T Consensus 312 ~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 312 RDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.74 E-value=1.3e-17 Score=187.89 Aligned_cols=198 Identities=25% Similarity=0.312 Sum_probs=140.6
Q ss_pred CCCCcccccCCHHHH---HHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 353 NVKTFKDVKGCDDAK---QELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 353 ~~~tFdDVvG~deaK---~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
.+.+|++++|++.++ ..|...+.. ++. .++||+||||||||++|++||+.++.+|+.+++...
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~~-~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA-----------GHL-HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TCC-CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc-----------CCC-cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 346899999999998 556555541 222 489999999999999999999999999999987543
Q ss_pred hhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEc--CCCC
Q 003807 430 MFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT--NLPD 503 (794)
Q Consensus 430 ~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaAT--N~p~ 503 (794)
+.+.++.+|..+.. ..++||||||||.+.. ..++.|+..++. ..+++|++| |...
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~----------~~q~~LL~~le~----~~v~lI~att~n~~~ 147 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK----------SQQDAFLPHIED----GTITFIGATTENPSF 147 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------CCHHHHHT----TSCEEEEEESSCGGG
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH----------HHHHHHHHHHhc----CceEEEecCCCCccc
Confidence 33456666666553 4678999999999954 234456666663 346667666 4445
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCC-----C---CcccHHHHHH-------HHHHHHHHHHHHHHH
Q 003807 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPL-----A---DDVDVKAIAR-------DLANLVNIAAIKAAV 568 (794)
Q Consensus 504 ~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l-----~---~dvdl~~IAr-------DL~nlvn~Aal~Aa~ 568 (794)
.++++|++ |+. ++.+++|+.+++..+++.++..... . ++..+..+++ ++.++++.++..+..
T Consensus 148 ~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~ 224 (447)
T 3pvs_A 148 ELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEV 224 (447)
T ss_dssp SSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCB
T ss_pred ccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccc
Confidence 79999998 774 7889999999999999999875211 1 1222444444 667777777766542
Q ss_pred h--CCCCCcHHHHHHHHHHH
Q 003807 569 D--GGEKLTATELEFAKDRI 586 (794)
Q Consensus 569 ~--~~~~It~~dl~~Ai~ri 586 (794)
. +...||.++++.++.+.
T Consensus 225 ~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 225 DDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp CTTSCEECCHHHHHHHHTCC
T ss_pred ccCCCCccCHHHHHHHHhhh
Confidence 2 44579999999887654
No 47
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=3.3e-18 Score=164.31 Aligned_cols=159 Identities=23% Similarity=0.366 Sum_probs=116.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 422 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~i 422 (794)
.+.+|++++|.++..+.+.+.+. . ..+.+++|+||||||||++|++++.++ +.+++++
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 34579999999998776655432 2 235689999999999999999999986 7889999
Q ss_pred eCcchh--hhhhhhhhHHHHHHHHHHH-hCCCeEEEEcCccccccccccc-ccchHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 423 AGSEFE--EMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 423 s~se~~--e~~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~-~~~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
++..+. ..+.+.....++.++..+. ...++||||||+|.+...+... .......+..++ + ..++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~---~----~~~~~~i~~ 157 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---A----RGELHCVGA 157 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH---H----TTSCCEEEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh---c----cCCeEEEEe
Confidence 987765 3345556667788887664 4568899999999997543221 111233333333 2 346778888
Q ss_pred cCCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHH
Q 003807 499 TNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEIL 533 (794)
Q Consensus 499 TN~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eIL 533 (794)
||.+. .+++++.+ ||+ .+.++.|+.++|.+||
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88776 78999998 998 6999999999998876
No 48
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=9.8e-18 Score=191.54 Aligned_cols=225 Identities=16% Similarity=0.214 Sum_probs=148.3
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhcC--chhhhhcCC---CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKN--PSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~--p~~~~~lG~---~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
..|.....+.+|+||+|.+++++.|.+.+..... +..|...|. ..++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 4566666778999999999999999887764221 122323332 35689999999999999999999999999999
Q ss_pred EEeCcchhhhhhhhhh-------HHHHHHHHHH-----HhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc
Q 003807 421 YRAGSEFEEMFVGVGA-------RRVRSLFQAA-----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (794)
Q Consensus 421 ~is~se~~e~~vG~~~-------~~vr~lF~~A-----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~ 488 (794)
.++++++......... ..+..+|..+ ....++||||||+|.+.... +..++.|+..++.
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-------~~~l~~L~~~l~~-- 177 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-------RGGVGQLAQFCRK-- 177 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-------TTHHHHHHHHHHH--
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-------HHHHHHHHHHHHh--
Confidence 9999887543221110 0123344433 23567899999999996532 2234555555553
Q ss_pred cCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHH
Q 003807 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAA 563 (794)
Q Consensus 489 ~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aa 563 (794)
.+..+|+|+++.....+. .+. |+...+.|++|+.+++.++++..+....+. ++..+..|++ |++.+++...
T Consensus 178 ~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 178 TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 234466655544434444 343 456789999999999999998877543322 2233666766 6666666654
Q ss_pred HHHHHhCCCCCcHHHHHHHHHH
Q 003807 564 IKAAVDGGEKLTATELEFAKDR 585 (794)
Q Consensus 564 l~Aa~~~~~~It~~dl~~Ai~r 585 (794)
..+. +...|+.+++..++..
T Consensus 254 ~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 254 TIST--TTKTINHENINEISKA 273 (516)
T ss_dssp HHHH--HSSCCCTTHHHHHHHH
T ss_pred HHHh--cCCCCchHHHHHHHHh
Confidence 4333 3467888888776653
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=6.9e-17 Score=172.47 Aligned_cols=167 Identities=23% Similarity=0.328 Sum_probs=115.8
Q ss_pred CCCccccc-C--CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcch
Q 003807 354 VKTFKDVK-G--CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (794)
Q Consensus 354 ~~tFdDVv-G--~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~ 427 (794)
..+|++++ | +..+...+..++. .+ ...+.+++|+||||||||++|+++++++ +.+++++++.++
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 45799987 4 4444444444333 22 1245689999999999999999999988 899999999888
Q ss_pred hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC---C
Q 003807 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---I 504 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~---~ 504 (794)
...+.+.........|..... .+++|||||+|.+..++ .....++..++........+|+++++.+. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~--------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 77 AQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE--------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH--------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh--------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 665544333222223333322 37899999999996531 22333444444333344567777777776 6
Q ss_pred CChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCC
Q 003807 505 LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPL 542 (794)
Q Consensus 505 LD~ALlRpGRFd--r~I~V~lPd~~eR~eILk~~l~~~~l 542 (794)
++++|.+ ||+ ..+.+++ +.+++.+|++.++.....
T Consensus 148 l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~ 184 (324)
T 1l8q_A 148 VSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNL 184 (324)
T ss_dssp SCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTC
T ss_pred hhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCC
Confidence 8999998 886 6899999 999999999999875443
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.73 E-value=1.3e-16 Score=160.09 Aligned_cols=198 Identities=16% Similarity=0.133 Sum_probs=133.2
Q ss_pred CCCcccccCC---HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcch
Q 003807 354 VKTFKDVKGC---DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (794)
Q Consensus 354 ~~tFdDVvG~---deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~ 427 (794)
..+|++++|. .++.+.+..++. . ..+.+++|+||||||||++|+++++++ +.+++++++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3689999973 344444444433 1 134689999999999999999999877 478999999887
Q ss_pred hhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcE-EEEEEcCCCC---
Q 003807 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI-ILMAATNLPD--- 503 (794)
Q Consensus 428 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~V-IVIaATN~p~--- 503 (794)
...+... +.. ...+.+|||||+|.+... ......|+..++.......+ +|+++++.+.
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGH--------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTC--------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCC--------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 6543211 111 134689999999998542 11233344444433333334 5555555554
Q ss_pred CCChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHHHhCCCC
Q 003807 504 ILDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAAVDGGEK 573 (794)
Q Consensus 504 ~LD~ALlRpGRFd--r~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa~~~~~~ 573 (794)
.+++++.+ ||. ..+.+++|+.+++.++++.+++..... ++..+..+++ ++.++++.+...|..++ ..
T Consensus 154 ~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~ 230 (242)
T 3bos_A 154 FVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RK 230 (242)
T ss_dssp CCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CC
T ss_pred Hhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 45688887 776 899999999999999999988755432 2223444544 77888888888775555 56
Q ss_pred CcHHHHHHHHH
Q 003807 574 LTATELEFAKD 584 (794)
Q Consensus 574 It~~dl~~Ai~ 584 (794)
||.++++.++.
T Consensus 231 It~~~v~~~l~ 241 (242)
T 3bos_A 231 LTIPFVKEMLR 241 (242)
T ss_dssp CCHHHHHHHHT
T ss_pred CcHHHHHHHhh
Confidence 99999988763
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.72 E-value=2.1e-16 Score=156.53 Aligned_cols=198 Identities=20% Similarity=0.310 Sum_probs=137.9
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 003807 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 418 (794)
Q Consensus 350 p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p----------- 418 (794)
....+.+|++++|.++.++.|...+.. .+.|..++|+||||||||++|++++++.+..
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 344556899999999999888877652 2345689999999999999999999987542
Q ss_pred -------------EEEEeCcchhhhhhhhhhHHHHHHHHHHH----hCCCeEEEEcCcccccccccccccchHHHHHHHH
Q 003807 419 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (794)
Q Consensus 419 -------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL 481 (794)
++.++... ......++.++..+. ...+.+|+|||+|.+. ...++.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~----------~~~~~~l~ 147 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNALL 147 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC----------HHHHHHHH
T ss_pred HHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc----------HHHHHHHH
Confidence 22222211 112234555555443 2357899999999983 24566777
Q ss_pred HhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------
Q 003807 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR------- 553 (794)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr------- 553 (794)
..++.. ..++++|.+||.+..+++++.+ |+ ..+.+++|+.++..++++.++...... ++..+..+++
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~ 222 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 222 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHH
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHH
Confidence 777643 4568888899999999999987 65 789999999999999999988654332 2223444544
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 554 DLANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 554 DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
.+.++++.|.. .+...|+.+++++++
T Consensus 223 ~~~~~~~~~~~----~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 223 DALSLTDQAIA----SGDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHT----TTTSSBCHHHHHHHS
T ss_pred HHHHHHHHHHh----ccCceecHHHHHHHh
Confidence 55566665532 234579999888764
No 52
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=2e-16 Score=170.90 Aligned_cols=205 Identities=23% Similarity=0.295 Sum_probs=147.0
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----------CCCEEEEeCc
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----------GVPFFYRAGS 425 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----------g~pfi~is~s 425 (794)
+++++|.++..+.+.+.+..... ...|.+++|+||||||||++|+++++++ +.++++++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 48899999999999887764322 2345689999999999999999999987 8999999987
Q ss_pred chh-hh----------h-------hhhh-hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHH-HHHHHHhhh
Q 003807 426 EFE-EM----------F-------VGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKT-LHQLLVEMD 485 (794)
Q Consensus 426 e~~-e~----------~-------vG~~-~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~-LnqLL~eLD 485 (794)
... .. + .+.. ...+..++..+.... +||||||+|.+.... .... +..|+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~------~~~~~l~~l~~~~- 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR------GGDIVLYQLLRSD- 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST------TSHHHHHHHHTSS-
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC------CCceeHHHHhcCC-
Confidence 643 11 0 0111 122444444444443 499999999996432 1234 55555433
Q ss_pred ccccCCcEEEEEEcCCC---CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc----CCCCCcccHHHHHH-----
Q 003807 486 GFEQNEGIILMAATNLP---DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPLADDVDVKAIAR----- 553 (794)
Q Consensus 486 g~~~~~~VIVIaATN~p---~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~----~~l~~dvdl~~IAr----- 553 (794)
.++.+|++||.+ +.+++++.+ ||+..+.+++|+.+++.+|++.++.. ..+ ++..+..+++
T Consensus 163 -----~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 163 -----ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAKE 234 (384)
T ss_dssp -----SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHTT
T ss_pred -----cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHhc
Confidence 678899999987 678999987 88889999999999999999998763 222 2223444444
Q ss_pred -----HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 003807 554 -----DLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 587 (794)
Q Consensus 554 -----DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~ 587 (794)
.+.++++.|...|. +...|+.+|+..++++..
T Consensus 235 ~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 235 HGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 35567777776665 567899999999988764
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=9.3e-17 Score=171.53 Aligned_cols=206 Identities=20% Similarity=0.197 Sum_probs=141.8
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC------CCE
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------VPF 419 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag------~pf 419 (794)
..+.....+.+|++++|++++++.|...+. . ++.+ ++||+||||||||++|+++|+.++ ..+
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLK---S--------ANLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---C--------TTCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHh---c--------CCCC-EEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 345556677899999999999887766543 1 2233 499999999999999999999864 468
Q ss_pred EEEeCcchhhhhhhhhhHHHHHHHHHHH----------------hCCCeEEEEcCcccccccccccccchHHHHHHHHHh
Q 003807 420 FYRAGSEFEEMFVGVGARRVRSLFQAAK----------------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (794)
Q Consensus 420 i~is~se~~e~~vG~~~~~vr~lF~~Ar----------------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~e 483 (794)
+.+++++... ...+++.+.... ...+.||||||+|.+.. ...+.|+..
T Consensus 93 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------~~~~~Ll~~ 156 (353)
T 1sxj_D 93 LELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------DAQSALRRT 156 (353)
T ss_dssp EEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH----------HHHHHHHHH
T ss_pred EEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH----------HHHHHHHHH
Confidence 8888876421 111222221111 12456999999999843 345667777
Q ss_pred hhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HH
Q 003807 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DL 555 (794)
Q Consensus 484 LDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL 555 (794)
|+... ....+|.+||.+..+++++++ |+. .+.+++|+.++...+++..+....+. ++..+..+++ .+
T Consensus 157 le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~ 231 (353)
T 1sxj_D 157 METYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRG 231 (353)
T ss_dssp HHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHH
T ss_pred HHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHH
Confidence 76543 345666788999999999998 875 88999999999999999888654432 2333555555 45
Q ss_pred HHHHHHHHHHHHHhCCC-CCcHHHHHHHHH
Q 003807 556 ANLVNIAAIKAAVDGGE-KLTATELEFAKD 584 (794)
Q Consensus 556 ~nlvn~Aal~Aa~~~~~-~It~~dl~~Ai~ 584 (794)
.++++.++..+...+.. .|+.+++..++.
T Consensus 232 ~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 232 ITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 56666666655444433 799999887654
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.71 E-value=1.1e-16 Score=180.98 Aligned_cols=156 Identities=23% Similarity=0.337 Sum_probs=115.5
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CC
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GV 417 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~ 417 (794)
+.....+.+|++|+|.++.++.+.+++. . ..+.++||+||||||||++|+++|..+ +.
T Consensus 170 l~~~~r~~~ld~iiGr~~~i~~l~~~l~---r---------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 237 (468)
T 3pxg_A 170 LTAIAKEDSLDPVIGRSKEIQRVIEVLS---R---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (468)
T ss_dssp HHHHTTSSCSCCCCCCHHHHHHHHHHHH---C---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred HHHHHhcCCCCCccCcHHHHHHHHHHHh---c---------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 3333445689999999999887766654 1 233589999999999999999999986 78
Q ss_pred CEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEE
Q 003807 418 PFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 497 (794)
Q Consensus 418 pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIa 497 (794)
+|+.++++ ..|.|....+++.+|..+....|+||||| +. ....+.|+..|+ +..+.+|+
T Consensus 238 ~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---------~~a~~~L~~~L~----~g~v~vI~ 296 (468)
T 3pxg_A 238 RVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLA----RGELQCIG 296 (468)
T ss_dssp CEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTT----SSSCEEEE
T ss_pred eEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---------hhHHHHHHHhhc----CCCEEEEe
Confidence 89999887 66778878889999999998889999999 11 234455555554 45789999
Q ss_pred EcCCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003807 498 ATNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 498 ATN~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~ 539 (794)
+||.++ .+|+++.| ||. .|.|+.|+.+++.+||+.++..
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHH
Confidence 999887 68999999 997 5999999999999999988765
No 55
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.71 E-value=9.5e-17 Score=171.68 Aligned_cols=206 Identities=21% Similarity=0.177 Sum_probs=140.7
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh--hhhhh
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE--EMFVG 433 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~--e~~vG 433 (794)
.+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.... ....|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 478899999998877665431 14799999999999999999999999999998874211 11111
Q ss_pred hhhHH-HHHHHHHHHhCC---CeEEEEcCcccccccccccccchHHHHHHHHHhhhcc---------ccCCcEEEEEEcC
Q 003807 434 VGARR-VRSLFQAAKKKA---PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------EQNEGIILMAATN 500 (794)
Q Consensus 434 ~~~~~-vr~lF~~Ar~~a---P~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~---------~~~~~VIVIaATN 500 (794)
..... ....|. .... .+||||||+|.+.. ..++.|+..|+.. ....+++||+|+|
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPA----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSCH----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCCH----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 11000 000000 0112 27999999999843 4556666665532 1244678888888
Q ss_pred CCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC---C-----------------ccc---HHHH-
Q 003807 501 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA---D-----------------DVD---VKAI- 551 (794)
Q Consensus 501 ~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~---~-----------------dvd---l~~I- 551 (794)
..+ .+++++++ ||+.++.++.|+.+++.+|++.++...... . .++ +..+
T Consensus 159 p~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~ 236 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYII 236 (331)
T ss_dssp TTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred CCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 543 38999998 999999999999999999999987653211 0 011 1222
Q ss_pred --------------------------HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcc
Q 003807 552 --------------------------ARDLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 589 (794)
Q Consensus 552 --------------------------ArDL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g 589 (794)
.|.+.++++.|...|..+++..|+.+|+..++..++..
T Consensus 237 ~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 237 ELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 12344566777777888888899999999999887654
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=1.7e-16 Score=188.48 Aligned_cols=216 Identities=18% Similarity=0.277 Sum_probs=155.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEE
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 421 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~ 421 (794)
....+|++++|.++..+.+.+++. . ..+.++||+||||||||++|+++|..+ +..++.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 344589999999998777655443 2 234689999999999999999999987 566888
Q ss_pred EeCcchh--hhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 422 RAGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 422 is~se~~--e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
++++.+. ..+.|....+++.+|+.+....++||||||+|.+.+.+.... ......+.|...+ .+..+.+|++|
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-~~~~~~~~L~~~l----~~~~~~~I~at 322 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-GQVDAANLIKPLL----SSGKIRVIGST 322 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS-CHHHHHHHHSSCS----SSCCCEEEEEE
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc-chHHHHHHHHHHH----hCCCeEEEEEe
Confidence 8877765 357788888999999999888889999999999976543211 1233333333333 35678899999
Q ss_pred CCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC----CCC-CcccHHHHHH-------------HHH
Q 003807 500 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PLA-DDVDVKAIAR-------------DLA 556 (794)
Q Consensus 500 N~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~----~l~-~dvdl~~IAr-------------DL~ 556 (794)
|.++ .+|++|.| ||+ .+.|+.|+.++|.+||+.+.... .+. .+..+..++. .+.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 8653 57899998 997 79999999999999998876531 111 1222333333 466
Q ss_pred HHHHHHHHHHHH----hCCCCCcHHHHHHHHHHHh
Q 003807 557 NLVNIAAIKAAV----DGGEKLTATELEFAKDRIL 587 (794)
Q Consensus 557 nlvn~Aal~Aa~----~~~~~It~~dl~~Ai~ri~ 587 (794)
+++++|...+.. .+...|+.+|+..++.+..
T Consensus 400 ~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 778887766555 2456899999999998764
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.70 E-value=1.2e-15 Score=164.81 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=151.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhh
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~ 431 (794)
-.+.+|++++|.+.+++.+...+..-+. .+..+.+++|+||||||||+||+++|+++++++...++..+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC--
Confidence 3455899999999988888766653211 1245568999999999999999999999999998887765432
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc--------c--------CCcEEE
Q 003807 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------Q--------NEGIIL 495 (794)
Q Consensus 432 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~--------~--------~~~VIV 495 (794)
...+..++.. ...++|+||||+|.+.. ...+.|+..++.+. . -..+.+
T Consensus 90 ----~~~l~~~~~~--~~~~~v~~iDE~~~l~~----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 ----QGDMAAILTS--LERGDVLFIDEIHRLNK----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ----HHHHHHHHHH--CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ----HHHHHHHHHH--ccCCCEEEEcchhhcCH----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1223333322 23457999999999853 12222333332221 0 123677
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------HHHHHHHHHHHHHH
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------DLANLVNIAAIKAA 567 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------DL~nlvn~Aal~Aa 567 (794)
+++|+.+..|++.+++ ||...+.+++|+.+++.+|++...+..... ++.....||+ ++.++++.+...|.
T Consensus 154 i~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 8899999999999998 999899999999999999999887654433 2223455555 67788888888888
Q ss_pred HhCCCCCcHHHHHHHHHHHh
Q 003807 568 VDGGEKLTATELEFAKDRIL 587 (794)
Q Consensus 568 ~~~~~~It~~dl~~Ai~ri~ 587 (794)
.++...||.++++.+++.+.
T Consensus 232 ~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 232 VVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHTCSSBCHHHHHHHHHHHT
T ss_pred HcCCCCcCHHHHHHHHHHhC
Confidence 88888999999999998864
No 58
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.69 E-value=3.5e-16 Score=170.73 Aligned_cols=174 Identities=25% Similarity=0.296 Sum_probs=113.9
Q ss_pred cccCCHHHHHHHHHHHHH-hcCchhh-----------------hhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 359 DVKGCDDAKQELVEVVEY-LKNPSKF-----------------TRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~-Lk~p~~~-----------------~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
+|+|++++|+.|...+.. ++..... .......+.++||+||||||||++|+++|..++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999887632 1111100 0012345668999999999999999999999999999
Q ss_pred EEeCcchh-hhhhhhh-hHHHHHHHHHHH----hCCCeEEEEcCcccccccccccc----cchHHHHHHHHHhhhccc--
Q 003807 421 YRAGSEFE-EMFVGVG-ARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFE-- 488 (794)
Q Consensus 421 ~is~se~~-e~~vG~~-~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~LnqLL~eLDg~~-- 488 (794)
.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.... ......++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 344555555432 23578999999999977543211 112347788888888531
Q ss_pred -----------------cCCcEEEEEEcCCC-----------------------------------------CCCChhhc
Q 003807 489 -----------------QNEGIILMAATNLP-----------------------------------------DILDPALT 510 (794)
Q Consensus 489 -----------------~~~~VIVIaATN~p-----------------------------------------~~LD~ALl 510 (794)
...++++|+++|.. ..+.+.|.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12456788887721 12456666
Q ss_pred CCCccceEEEccCCCHHHHHHHHH
Q 003807 511 RPGRFDRHIVVPNPDVRGRQEILE 534 (794)
Q Consensus 511 RpGRFdr~I~V~lPd~~eR~eILk 534 (794)
+ ||+.++.|++++.++...|+.
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHh
Confidence 6 898999999999999999886
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=2e-16 Score=165.98 Aligned_cols=206 Identities=21% Similarity=0.237 Sum_probs=138.4
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEE
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFY 421 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~ 421 (794)
.+.....+.+|++++|++++++.|...+. . .+.| ++||+||||||||++|+++++++ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 34455666789999999999888765543 1 2344 49999999999999999999986 446888
Q ss_pred EeCcchhhhhhhhhhHHHHHHHHHH-H-hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 422 RAGSEFEEMFVGVGARRVRSLFQAA-K-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 422 is~se~~e~~vG~~~~~vr~lF~~A-r-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
+++++.... ......+..+.... . ...+.||+|||+|.+.. ...+.|+..++. ...++++|++|
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~--~~~~~~~i~~~ 139 (319)
T 2chq_A 74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEM--YSKSCRFILSC 139 (319)
T ss_dssp EETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH----------HHHHTTGGGTSS--SSSSEEEEEEE
T ss_pred EeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH----------HHHHHHHHHHHh--cCCCCeEEEEe
Confidence 888765321 11112222221110 0 13478999999999843 455667777764 34567888899
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHHHHHhCCCCC
Q 003807 500 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIKAAVDGGEKL 574 (794)
Q Consensus 500 N~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~~~~I 574 (794)
|.+..+++++.+ |+. .+.+++|+.+++.++++.+++..+.. ++..+..++. ++..+.+.....+. ....|
T Consensus 140 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~--~~~~i 214 (319)
T 2chq_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAA--IGEVV 214 (319)
T ss_dssp SCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHH--SSSCB
T ss_pred CChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCCC
Confidence 999999999998 774 89999999999999999988765443 2223444554 44434333322222 23468
Q ss_pred cHHHHHHHH
Q 003807 575 TATELEFAK 583 (794)
Q Consensus 575 t~~dl~~Ai 583 (794)
+.+++..++
T Consensus 215 ~~~~v~~~~ 223 (319)
T 2chq_A 215 DADTIYQIT 223 (319)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHH
Confidence 887776553
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=7.7e-16 Score=165.04 Aligned_cols=216 Identities=21% Similarity=0.267 Sum_probs=150.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc------CCCEEEEeCcchh
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------GVPFFYRAGSEFE 428 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea------g~pfi~is~se~~ 428 (794)
..+++++|.++..+.|.+.+.... ....+..++|+||||||||++++++++++ +.++++++|....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 356889999998887766554221 12345689999999999999999999988 8899999976432
Q ss_pred hh------h----------hhhhh-HHHHHHHHHHHhC-CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccC
Q 003807 429 EM------F----------VGVGA-RRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN 490 (794)
Q Consensus 429 e~------~----------vG~~~-~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~ 490 (794)
.. . .+... .....++...... .|+||+|||+|.+....+ ...+..++..++.. ..
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~------~~~l~~l~~~~~~~-~~ 161 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN------DDILYKLSRINSEV-NK 161 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC------STHHHHHHHHHHSC-CC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc------CHHHHHHhhchhhc-CC
Confidence 11 0 11112 2244444444443 389999999999964321 34667777777654 34
Q ss_pred CcEEEEEEcCCC---CCCChhhcCCCccc-eEEEccCCCHHHHHHHHHHHhccCC---CCCcccHHHHHH----------
Q 003807 491 EGIILMAATNLP---DILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDKP---LADDVDVKAIAR---------- 553 (794)
Q Consensus 491 ~~VIVIaATN~p---~~LD~ALlRpGRFd-r~I~V~lPd~~eR~eILk~~l~~~~---l~~dvdl~~IAr---------- 553 (794)
.++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..+|++.++.... ...+..+..+++
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 239 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDAR 239 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHH
T ss_pred CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHH
Confidence 578888999877 467888877 665 5899999999999999998775311 111222333332
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 003807 554 DLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 587 (794)
Q Consensus 554 DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~ 587 (794)
.+.++++.|...|..++...|+.+|+..++....
T Consensus 240 ~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 240 RALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 4567888888888878888999999999988764
No 61
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.68 E-value=4.4e-17 Score=156.75 Aligned_cols=153 Identities=23% Similarity=0.342 Sum_probs=110.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 422 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~i 422 (794)
.+.+|++++|.++..+.+.+.+ .. ..+.++||+||||||||++|++++.++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred hccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 3457999999998766665544 22 234689999999999999999999987 7888988
Q ss_pred eCcchhh--hhhhhhhHHHHHHHHHHHhC-CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 423 AGSEFEE--MFVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 423 s~se~~e--~~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
++..+.. .+.+.....++.++..+... .|++|||||+|.+...+.... .....++.|...++ ...+++|++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~~l~~~~~----~~~~~ii~~~ 159 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-GALDAGNILKPMLA----RGELRCIGAT 159 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-TSCCTHHHHHHHHH----TTCSCEEEEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-cchHHHHHHHHHHh----cCCeeEEEec
Confidence 8877643 24455566777888777664 688999999999975443111 11223333433333 3567889999
Q ss_pred CCCC-----CCChhhcCCCccceEEEccCCC
Q 003807 500 NLPD-----ILDPALTRPGRFDRHIVVPNPD 525 (794)
Q Consensus 500 N~p~-----~LD~ALlRpGRFdr~I~V~lPd 525 (794)
|.+. .+|+++++ ||+. +.++.|+
T Consensus 160 ~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 160 TVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp CHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 9775 68999999 9985 9999886
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.67 E-value=4.1e-16 Score=185.61 Aligned_cols=154 Identities=23% Similarity=0.329 Sum_probs=115.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEE
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFF 420 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi 420 (794)
.....+|++|+|.++.++.+.+++. .+.+.++||+||||||||++|+++|..+ +++++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHh------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3445689999999999888876654 1234589999999999999999999996 78888
Q ss_pred EEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 421 YRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 421 ~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
.+++ ...|.|....+++.+|..+....|+||||| +. ....+.|+..|+ +..+.+|++||
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~---------~~~~~~L~~~l~----~~~v~~I~at~ 299 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLA----RGELQCIGATT 299 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTT----SSSCEEEEECC
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc---------hhHHHHHHHHHh----cCCEEEEeCCC
Confidence 8887 556788888899999999999999999999 11 234455555554 55789999999
Q ss_pred CCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC
Q 003807 501 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 540 (794)
Q Consensus 501 ~p~-----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~ 540 (794)
..+ .+|+++.| || ..|.|+.|+.+++.+||+.+....
T Consensus 300 ~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~ 341 (758)
T 3pxi_A 300 LDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRY 341 (758)
T ss_dssp TTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTS
T ss_pred hHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHH
Confidence 988 79999999 99 569999999999999999877653
No 63
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=1.2e-15 Score=160.41 Aligned_cols=201 Identities=16% Similarity=0.174 Sum_probs=137.8
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEE
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYR 422 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea-----g~pfi~i 422 (794)
+.+...+.+|++++|++++++.|...+. ..+.|. +||+||||||||++|+++++++ +.+++.+
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAK-----------DGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHH-----------SCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHH-----------cCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 3344556789999999999998887765 234554 9999999999999999999986 4568888
Q ss_pred eCcchhhhhhhhhhHHHHHHHHHHH-------hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEE
Q 003807 423 AGSEFEEMFVGVGARRVRSLFQAAK-------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 495 (794)
Q Consensus 423 s~se~~e~~vG~~~~~vr~lF~~Ar-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIV 495 (794)
++++... ...+++++.... ...+.||+|||+|.+.. ...+.|+..++. ...++++
T Consensus 79 ~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~--~~~~~~~ 140 (323)
T 1sxj_B 79 NASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------GAQQALRRTMEL--YSNSTRF 140 (323)
T ss_dssp CTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH----------HHHHTTHHHHHH--TTTTEEE
T ss_pred cCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH----------HHHHHHHHHHhc--cCCCceE
Confidence 8765321 234555555544 23478999999999843 345556666664 2355777
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHHHHHhC
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIKAAVDG 570 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~ 570 (794)
|.+||.+..+++++.+ |+. .+.+++|+.+++.++++.+++..... ++..+..+++ ++..+++.....+..
T Consensus 141 il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~-- 215 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG-- 215 (323)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred EEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--
Confidence 8888999999999988 664 89999999999999999887654332 2223344444 333333322222211
Q ss_pred CCCCcHHHHHHHH
Q 003807 571 GEKLTATELEFAK 583 (794)
Q Consensus 571 ~~~It~~dl~~Ai 583 (794)
...|+.+++..++
T Consensus 216 ~~~i~~~~v~~~~ 228 (323)
T 1sxj_B 216 HGLVNADNVFKIV 228 (323)
T ss_dssp HSSBCHHHHHHHH
T ss_pred CCCcCHHHHHHHH
Confidence 1467887776655
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.67 E-value=5.6e-16 Score=163.12 Aligned_cols=167 Identities=21% Similarity=0.304 Sum_probs=118.2
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh----
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---- 430 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~---- 430 (794)
++++|++++++.+...+......-. ...++..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 4688999999999888765321100 012233479999999999999999999987 567999999876432
Q ss_pred -hhhhh-----hHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc---------CCcEEE
Q 003807 431 -FVGVG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGIIL 495 (794)
Q Consensus 431 -~vG~~-----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~---------~~~VIV 495 (794)
..|.. ......+.........+||||||+|.+.. ..++.|+..|+...- -.++++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~----------~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP----------DVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH----------HHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH----------HHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 12110 00001233333444558999999999843 566777777664321 126779
Q ss_pred EEEcCC--------------------------CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003807 496 MAATNL--------------------------PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 496 IaATN~--------------------------p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~ 539 (794)
|+|||. ...++++|++ ||+..+.+++|+.+++..|++.+++.
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 999998 4467888887 99999999999999999999998764
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.3e-16 Score=169.28 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=116.1
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeCcchhh
Q 003807 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEFEE 429 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~is~se~~e 429 (794)
+.|.++..+.+...+... +....|.+++|+||||||||++++++++++ ++.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 566666666665544421 223456799999999999999999999988 35688999876533
Q ss_pred h----------hh------hhhhHHHHHHHHHH--HhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCC
Q 003807 430 M----------FV------GVGARRVRSLFQAA--KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 491 (794)
Q Consensus 430 ~----------~v------G~~~~~vr~lF~~A--r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~ 491 (794)
. +. +.....++.+|... ....++||||||+|.+. .+..+..|+.... ..+.
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---------~q~~L~~l~~~~~--~~~s 162 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---------SEKILQYFEKWIS--SKNS 162 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---------CTHHHHHHHHHHH--CSSC
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---------cchHHHHHHhccc--ccCC
Confidence 2 11 22456678888875 34568999999999996 1456777776443 2456
Q ss_pred cEEEEEEcCCCCCC----ChhhcCCCccc-eEEEccCCCHHHHHHHHHHHhccC
Q 003807 492 GIILMAATNLPDIL----DPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDK 540 (794)
Q Consensus 492 ~VIVIaATN~p~~L----D~ALlRpGRFd-r~I~V~lPd~~eR~eILk~~l~~~ 540 (794)
+++||+++|..+.. ++++.+ ||. ++|.|++++.++..+|++..++..
T Consensus 163 ~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 163 KLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 79999999988754 344455 786 689999999999999999988653
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.65 E-value=2.3e-15 Score=161.88 Aligned_cols=197 Identities=20% Similarity=0.303 Sum_probs=139.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------ 418 (794)
...+.+|++++|.+++++.|...+. .++.+..+||+||||||||++|+++|+.+++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~-----------~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLS-----------LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHH-----------HTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 3455689999999999998887765 23456689999999999999999999988642
Q ss_pred ------------EEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHH
Q 003807 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (794)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~ 482 (794)
++.+++.. ..+...++.+++.+.. ..+.||+|||+|.+. ...++.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~----------~~~~~~Ll~ 141 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNALLK 141 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC----------HHHHHHHHH
T ss_pred HHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc----------HHHHHHHHH
Confidence 22222211 0122346667666542 346899999999984 245677777
Q ss_pred hhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH-------H
Q 003807 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR-------D 554 (794)
Q Consensus 483 eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr-------D 554 (794)
.++. ...++++|.+|+.+..+.+.+.+ |+ ..+.+++|+.++..++++.+++..+.. ++..+..+++ +
T Consensus 142 ~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~ 216 (373)
T 1jr3_A 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRD 216 (373)
T ss_dssp HHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHH
T ss_pred HHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHH
Confidence 7775 34567888888988899999987 65 789999999999999999988654432 2222445554 4
Q ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 003807 555 LANLVNIAAIKAAVDGGEKLTATELEFAK 583 (794)
Q Consensus 555 L~nlvn~Aal~Aa~~~~~~It~~dl~~Ai 583 (794)
+.++++.+... +...|+.+++..++
T Consensus 217 ~~~~l~~~~~~----~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 217 ALSLTDQAIAS----GDGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHH----TTTCBCHHHHHHHT
T ss_pred HHHHHHHHHHh----cCCcccHHHHHHHh
Confidence 55556555432 24578888886654
No 67
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.7e-15 Score=158.04 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=136.2
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEEE
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFY 421 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag-----~pfi~ 421 (794)
.+.....+.+|++++|++++++.|...+.. ++.| ++||+||||||||++|+++++.+. .+++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TCCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 444556677899999999999988877651 2334 599999999999999999999863 35788
Q ss_pred EeCcchhhhhhhhhhHHHHHHHHHH-H-----hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEE
Q 003807 422 RAGSEFEEMFVGVGARRVRSLFQAA-K-----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 495 (794)
Q Consensus 422 is~se~~e~~vG~~~~~vr~lF~~A-r-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIV 495 (794)
+++++.... ..++..+... . ...+.+|+|||+|.+.. ..++.|+..++.. ..++++
T Consensus 82 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~~--~~~~~~ 143 (327)
T 1iqp_A 82 LNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ----------DAQQALRRTMEMF--SSNVRF 143 (327)
T ss_dssp EETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH----------HHHHHHHHHHHHT--TTTEEE
T ss_pred eeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH----------HHHHHHHHHHHhc--CCCCeE
Confidence 887764321 1122222221 1 14578999999999843 4566677777643 346778
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHHHHHhC
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIKAAVDG 570 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~ 570 (794)
|.+||.+..+++++.+ |+. .+.+++|+.++..++++.++...... ++..+..+++ ++..+++.....+ ..
T Consensus 144 i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~--~~ 218 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAA--AL 218 (327)
T ss_dssp EEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHH--TT
T ss_pred EEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH--hc
Confidence 8889999999999987 775 78999999999999999888755432 2223344444 3333333222111 22
Q ss_pred CCCCcHHHHHHHH
Q 003807 571 GEKLTATELEFAK 583 (794)
Q Consensus 571 ~~~It~~dl~~Ai 583 (794)
...|+.+++..+.
T Consensus 219 ~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 219 DKKITDENVFMVA 231 (327)
T ss_dssp CSEECHHHHHHHT
T ss_pred CCCCCHHHHHHHH
Confidence 3467777776543
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=1.9e-15 Score=179.93 Aligned_cols=163 Identities=23% Similarity=0.304 Sum_probs=121.7
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK-GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 432 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pk-gVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v 432 (794)
.++|+|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 46799999999999888876442111 011233 69999999999999999999987 78999999999987654
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCCcEEEEEEcCCCC
Q 003807 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIILMAATNLPD 503 (794)
Q Consensus 433 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~~VIVIaATN~p~ 503 (794)
.. ...++...+...++||||||||.+. ...++.|+..|+... ...+++||+|||.+.
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~~----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKAH----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGSC----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred cc----cchhhHHHHhCCCeEEEEeCccccC----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 43 1223344455667899999999883 356777777776522 223578999999765
Q ss_pred C------------CChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003807 504 I------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 504 ~------------LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~ 539 (794)
. +.|+|++ |||.+|.|++|+.+++.+|++.++..
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 4 7788887 99999999999999999999988754
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.64 E-value=2.2e-15 Score=181.74 Aligned_cols=167 Identities=23% Similarity=0.345 Sum_probs=114.7
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEE
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 421 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----------g~pfi~ 421 (794)
..+.+|++++|.++..+.+.+++. . ..+.++||+||||||||++|+++|+++ +.++++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 345689999999987766655543 2 234579999999999999999999987 889999
Q ss_pred EeCcchh--hhhhhhhhHHHHHHHHHHHhC-CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 422 RAGSEFE--EMFVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 422 is~se~~--e~~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
++++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+.....+ .....+.|...++ ...+.+|++
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g--~~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG--AVDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHH----TTCCCEEEE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc--hHHHHHHHHHHHh----CCCeEEEEe
Confidence 9998886 567788888999999999875 689999999999976543211 1233334444443 356788999
Q ss_pred cCCCC----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003807 499 TNLPD----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 499 TN~p~----~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~ 539 (794)
||.++ .+|++|.| ||+. +.|+.|+.+++.+||+.++..
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~ 347 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEK 347 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhh
Confidence 98774 47999999 9986 999999999999999877653
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=1.5e-14 Score=156.08 Aligned_cols=212 Identities=15% Similarity=0.158 Sum_probs=149.7
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc--eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchhh
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK--GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEE 429 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pk--gVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~e 429 (794)
.+++++|.++..+.|.+.+..... +..+. .++|+||||||||++++++++.+ +.++++++|.....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 458899999998888887764321 12233 89999999999999999999988 67899999765432
Q ss_pred h---h------h-------hhhhHH-HHHHHHHHH-hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc--
Q 003807 430 M---F------V-------GVGARR-VRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-- 489 (794)
Q Consensus 430 ~---~------v-------G~~~~~-vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~-- 489 (794)
. + . +..... ...+..... ...|.||+|||+|.+. ...++.|+..++....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~----------~~~~~~L~~~~~~~~~~~ 156 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA----------PDILSTFIRLGQEADKLG 156 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC----------HHHHHHHHHHTTCHHHHS
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc----------hHHHHHHHHHHHhCCCCC
Confidence 1 0 0 111111 222222222 2458899999999982 3567777777765432
Q ss_pred CCcEEEEEEcCCC---CCCChhhcCCCccce-EEEccCCCHHHHHHHHHHHhccC---CCCCcccHHHHHH---------
Q 003807 490 NEGIILMAATNLP---DILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQDK---PLADDVDVKAIAR--------- 553 (794)
Q Consensus 490 ~~~VIVIaATN~p---~~LD~ALlRpGRFdr-~I~V~lPd~~eR~eILk~~l~~~---~l~~dvdl~~IAr--------- 553 (794)
..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+... ..-++..+..+++
T Consensus 157 ~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (389)
T 1fnn_A 157 AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLD 234 (389)
T ss_dssp SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTC
T ss_pred cCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCC
Confidence 2578889999988 678888877 7875 89999999999999999887641 1112222233322
Q ss_pred -------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 003807 554 -------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 587 (794)
Q Consensus 554 -------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~ 587 (794)
.+.++++.|...|..++...|+.+++..++..+.
T Consensus 235 ~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 235 TNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 4567888888888888888999999999988764
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.62 E-value=3.9e-15 Score=154.30 Aligned_cols=196 Identities=22% Similarity=0.276 Sum_probs=116.8
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCcchhhhh
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEMF 431 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag---~pfi~is~se~~e~~ 431 (794)
.+|++++|.+.+++.+.+.+..+.. .+.++||+||||||||++|++++..+. .||++++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 3799999999998888877765432 235799999999999999999999874 799999998874321
Q ss_pred -----hhhhhHH-------HHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc---------ccC
Q 003807 432 -----VGVGARR-------VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------EQN 490 (794)
Q Consensus 432 -----vG~~~~~-------vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~---------~~~ 490 (794)
.|..... ....|..+ .+++|||||||.+.. ..+..|+..++.. ...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM----------MVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH----------HHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH----------HHHHHHHHHHHhCCeecCCCccccc
Confidence 1110000 01122222 346999999999853 3445555555532 112
Q ss_pred CcEEEEEEcCCC-------CCCChhhcCCCccceEEEccCCCHHHH----HHHHHHHhcc----CCCC--CcccHH---H
Q 003807 491 EGIILMAATNLP-------DILDPALTRPGRFDRHIVVPNPDVRGR----QEILELYLQD----KPLA--DDVDVK---A 550 (794)
Q Consensus 491 ~~VIVIaATN~p-------~~LD~ALlRpGRFdr~I~V~lPd~~eR----~eILk~~l~~----~~l~--~dvdl~---~ 550 (794)
.++.+|+|||.+ ..++++|.+ ||+. +.+..|+.++| ..+++++++. .... ..++.+ .
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 457889999974 246788877 8853 34555555544 4455554432 2221 133333 3
Q ss_pred HHH--------HHHHHHHHHHHHHHHhCCCCCcHHHH
Q 003807 551 IAR--------DLANLVNIAAIKAAVDGGEKLTATEL 579 (794)
Q Consensus 551 IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl 579 (794)
+.. +|.++++.+...+ ....|+.+|+
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 322 7777777776554 3456766665
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=4.8e-15 Score=176.09 Aligned_cols=165 Identities=22% Similarity=0.311 Sum_probs=122.8
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhh-------
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM------- 430 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~------- 430 (794)
++|+|++++++.+...+......-. ...++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4689999999988887764321100 001233479999999999999999999999999999999988653
Q ss_pred -----hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc---------CCcEEEE
Q 003807 431 -----FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGIILM 496 (794)
Q Consensus 431 -----~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~---------~~~VIVI 496 (794)
|+|.... ..+....+...++||||||||.+. ...++.|+..|+.-.- -.+++||
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI 602 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH----------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC----------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC----------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEE
Confidence 4432221 223444555667999999999883 3577778877774211 1358899
Q ss_pred EEcCCCC-------------------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003807 497 AATNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (794)
Q Consensus 497 aATN~p~-------------------------~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~ 539 (794)
+|||.+. .++++|++ |||.+|.|++|+.+++..|++.++..
T Consensus 603 ~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp EEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 9999754 57788887 99999999999999999999998763
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=9.1e-15 Score=157.44 Aligned_cols=162 Identities=22% Similarity=0.271 Sum_probs=119.0
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CEEE
Q 003807 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----PFFY 421 (794)
Q Consensus 347 ~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~-----pfi~ 421 (794)
.+.....+.+|++++|++++++.|...+. .++.|. +||+||||||||++|+++|+.+.. .+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~-----------~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVD-----------EGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHH-----------TTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 45556677799999999999888877665 245564 999999999999999999998743 3666
Q ss_pred EeCcchhhhhhhhhhHHHHHHHHHHHh------CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEE
Q 003807 422 RAGSEFEEMFVGVGARRVRSLFQAAKK------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 495 (794)
Q Consensus 422 is~se~~e~~vG~~~~~vr~lF~~Ar~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIV 495 (794)
+++++.. +...+++.+..... ..+.|++|||+|.+.. ...+.|+..++.. .....+
T Consensus 82 ~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~--~~~~~~ 143 (340)
T 1sxj_C 82 LNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN----------AAQNALRRVIERY--TKNTRF 143 (340)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH----------HHHHHHHHHHHHT--TTTEEE
T ss_pred EcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH----------HHHHHHHHHHhcC--CCCeEE
Confidence 7765532 12334444333321 2368999999999843 4566777777753 345567
Q ss_pred EEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC
Q 003807 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP 541 (794)
Q Consensus 496 IaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~ 541 (794)
|.+||.+..+.+++.+ |+. .+.++.++.++..++++..++...
T Consensus 144 il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 144 CVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred EEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcC
Confidence 7788999999999998 764 789999999999999988885443
No 74
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=2.2e-14 Score=153.85 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=118.9
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC----------
Q 003807 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV---------- 417 (794)
Q Consensus 348 ~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~---------- 417 (794)
|.....+.+|++++|++++++.|+..+. + .++.|. ++|+||||||||++++++++++..
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 3445567789999999999887765441 1 244565 999999999999999999996521
Q ss_pred -------------------CEEEEeCcchhhhhhhhhhHHHHHHHHHHH--------------hCCCeEEEEcCcccccc
Q 003807 418 -------------------PFFYRAGSEFEEMFVGVGARRVRSLFQAAK--------------KKAPCIIFIDEIDAVGS 464 (794)
Q Consensus 418 -------------------pfi~is~se~~e~~vG~~~~~vr~lF~~Ar--------------~~aP~ILfIDEIDaL~~ 464 (794)
+++.+++++... .....+++.++.+. ...|.||+|||+|.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~- 147 (354)
T 1sxj_E 73 RQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT- 147 (354)
T ss_dssp -------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-
T ss_pred eeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-
Confidence 123333222110 00113455554432 2257799999999973
Q ss_pred cccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-
Q 003807 465 TRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA- 543 (794)
Q Consensus 465 ~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~- 543 (794)
....+.|+..++... .+..+|.+||.++.+.+.+.+ |+ ..+.|++|+.+++.++++..++..+..
T Consensus 148 ---------~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 148 ---------KDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ---------HHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ---------HHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 345666777776543 356778888999999999998 77 789999999999999999988654432
Q ss_pred C-cccHHHHHH
Q 003807 544 D-DVDVKAIAR 553 (794)
Q Consensus 544 ~-dvdl~~IAr 553 (794)
+ +..+..+++
T Consensus 214 ~~~~~l~~i~~ 224 (354)
T 1sxj_E 214 ETKDILKRIAQ 224 (354)
T ss_dssp CCSHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 2 333455554
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.56 E-value=6.3e-15 Score=168.19 Aligned_cols=201 Identities=18% Similarity=0.151 Sum_probs=124.6
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCcc-hhhhhhhh
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE-FEEMFVGV 434 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~se-~~e~~vG~ 434 (794)
..|+|.+++++.+...+. ...++||+||||||||++|+++|..++ .+|..+++.. -.+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 357899998877654432 113799999999999999999999884 4676666642 11222221
Q ss_pred -h-hH-HHHHHHHHHHhC---CCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc---------ccCCcEEEEEEc
Q 003807 435 -G-AR-RVRSLFQAAKKK---APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------EQNEGIILMAAT 499 (794)
Q Consensus 435 -~-~~-~vr~lF~~Ar~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~---------~~~~~VIVIaAT 499 (794)
. .. .-...|..+..+ .++|||||||+.+. ..+++.|+..|+.. ..+.. ++|+||
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~----------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~AT 156 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG----------PAILNTLLTAINERQFRNGAHVEKIPMR-LLVAAS 156 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC----------HHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc----------HHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhcc
Confidence 1 11 011223222222 46799999998763 35677777777532 11223 456777
Q ss_pred CCCCC---CChhhcCCCccceEEEccCCCH-HHHHHHHHHHhccCC----CCCcccH--------------------HHH
Q 003807 500 NLPDI---LDPALTRPGRFDRHIVVPNPDV-RGRQEILELYLQDKP----LADDVDV--------------------KAI 551 (794)
Q Consensus 500 N~p~~---LD~ALlRpGRFdr~I~V~lPd~-~eR~eILk~~l~~~~----l~~dvdl--------------------~~I 551 (794)
|.+.. +.+++++ ||...+.+++|+. +++.+|++.+..... ....++. +.+
T Consensus 157 N~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i 234 (500)
T 3nbx_X 157 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELI 234 (500)
T ss_dssp SSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred ccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHH
Confidence 75322 3458888 9999999999997 678899987653211 0011111 111
Q ss_pred HH-----------------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 552 AR-----------------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 552 Ar-----------------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
+. .+..+++.|...|..+++..|+.+|+. +...+
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 11 334577778888899999999999998 44333
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.54 E-value=2e-14 Score=153.67 Aligned_cols=194 Identities=23% Similarity=0.345 Sum_probs=121.3
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh---
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF--- 431 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~--- 431 (794)
++++|.+.+.+.+.+.+..+.. .+.+|||+||||||||++|++++... +.||+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 3689999998888887775432 24579999999999999999999965 6899999998874321
Q ss_pred --hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCCcE
Q 003807 432 --VGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGI 493 (794)
Q Consensus 432 --vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~~V 493 (794)
.|... ......|..+. +++|||||||.+.. ..+..|+..++... ...++
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 138 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP----------LMQVRLLRAIQEREVQRVGSNQTISVDV 138 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH----------HHHHHHHHHHHSSBCCBTTBCCCCBCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH----------HHHHHHHHHHhcCEeeecCCcccccCCe
Confidence 11100 01223455553 36999999999943 34555666665422 12458
Q ss_pred EEEEEcCCC-------CCCChhhcCCCccceEEEccCCCHHHH----HHHHHHHhcc----CCC-CCcccHHH---HHH-
Q 003807 494 ILMAATNLP-------DILDPALTRPGRFDRHIVVPNPDVRGR----QEILELYLQD----KPL-ADDVDVKA---IAR- 553 (794)
Q Consensus 494 IVIaATN~p-------~~LD~ALlRpGRFdr~I~V~lPd~~eR----~eILk~~l~~----~~l-~~dvdl~~---IAr- 553 (794)
.||+|||.+ ..+++.|.. ||+ .+.+..|+.++| ..+++++++. ... ...++.+. +..
T Consensus 139 riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 139 RLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred EEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 899999965 234555554 554 455555665554 3466665542 111 12344333 332
Q ss_pred -------HHHHHHHHHHHHHHHhCCCCCcHHHHH
Q 003807 554 -------DLANLVNIAAIKAAVDGGEKLTATELE 580 (794)
Q Consensus 554 -------DL~nlvn~Aal~Aa~~~~~~It~~dl~ 580 (794)
+|.+++..|...+ ....|+.+|+.
T Consensus 216 ~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 6777777776544 34567766653
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=2.7e-14 Score=166.13 Aligned_cols=209 Identities=21% Similarity=0.183 Sum_probs=130.4
Q ss_pred ccccCCHHHHHHHHHHHHHhcCc--hhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE----eCcchhhh-
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNP--SKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR----AGSEFEEM- 430 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p--~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i----s~se~~e~- 430 (794)
..|+|++++|+.+.- .+... ........+...++||+||||||||++|+++|+.++.+++.. ++..+...
T Consensus 295 ~~I~G~e~vk~al~~---~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~ 371 (595)
T 3f9v_A 295 PSIYGHWELKEALAL---ALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV 371 (595)
T ss_dssp STTSCCHHHHHHHTT---TTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC
T ss_pred chhcChHHHHHHHHH---HHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccccccccee
Confidence 468899988776622 11111 000001112233799999999999999999999998766542 22222111
Q ss_pred ----hhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc-----------cCCcEEE
Q 003807 431 ----FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIIL 495 (794)
Q Consensus 431 ----~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~-----------~~~~VIV 495 (794)
+.|.... ....+..| ..+|+||||||.+.. ..++.|+..|+.-. .+.++.|
T Consensus 372 ~~~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l~~----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 372 VREKGTGEYYL-EAGALVLA---DGGIAVIDEIDKMRD----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SSGGGTSSCSE-EECHHHHH---SSSEECCTTTTCCCS----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eeccccccccc-cCCeeEec---CCCcEEeehhhhCCH----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 1111000 01122233 236999999999854 34556666665321 1346789
Q ss_pred EEEcCCCC-------------CCChhhcCCCccce-EEEccCCCHHHHHHHHHHHhccCCC-------C-----------
Q 003807 496 MAATNLPD-------------ILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQDKPL-------A----------- 543 (794)
Q Consensus 496 IaATN~p~-------------~LD~ALlRpGRFdr-~I~V~lPd~~eR~eILk~~l~~~~l-------~----------- 543 (794)
|||||.+. .|+++|++ |||. .+..+.|+.+ ...|.++.+..... .
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~a 514 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYA 514 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHH
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHH
Confidence 99999886 89999999 9986 5556777777 77888776653220 0
Q ss_pred --------CcccHHHHHH----------------------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 544 --------DDVDVKAIAR----------------------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 544 --------~dvdl~~IAr----------------------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
.+...+.|.+ .+.++++.|...|..+++..|+.+|+.+|+.-+
T Consensus 515 r~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 515 RKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 0111112221 466788888888888899999999999998744
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.48 E-value=1.5e-13 Score=165.86 Aligned_cols=167 Identities=23% Similarity=0.324 Sum_probs=119.0
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh--
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF-- 431 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~-- 431 (794)
+++|+|++++++.+...+...+..-. ...++..++||+||||||||++|+++|..+ +.+|+.++|+++.+..
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46799999999999888875432100 001223489999999999999999999998 7899999998875431
Q ss_pred ---hhh-----hhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcccc---------CCcEE
Q 003807 432 ---VGV-----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGII 494 (794)
Q Consensus 432 ---vG~-----~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~---------~~~VI 494 (794)
.|. +......+....+...++||||||||.+. ..+++.|+..|+.-.- -.+++
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~----------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH----------PDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSC----------HHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC----------HHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 111 11112334444455567899999999873 3677888888774321 13678
Q ss_pred EEEEcCCC--------------------------CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 495 LMAATNLP--------------------------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 495 VIaATN~p--------------------------~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
||+|||.. ..+.++|+. |||..+.+++|+.+++..|++.++.
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 99999962 245677776 9999999999999999999998875
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=8.1e-14 Score=132.61 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=81.6
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhh
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV 434 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~ 434 (794)
++++|.+++.+.+.+.+..+.. .+.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSE----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 3678999998888887765432 23479999999999999999999987 78999 999887553
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 435 GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 435 ~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
......|..+. .++|||||||.+.. ..+..|+..|.. ...++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~----------~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTR----------EQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCH----------HHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCH----------HHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 23445666664 35999999999943 344556666643 23456788899864
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.43 E-value=1.1e-13 Score=131.57 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=81.4
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHH
Q 003807 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR 438 (794)
Q Consensus 359 DVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~ 438 (794)
+++|.+++.+.+.+.+..+.. .+.+|||+||||||||++|++++...+ ||+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 578999999888887765432 234799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 439 VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 439 vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
...+|..+. +++|||||||.+.. ..+..|+..++.. ...++.+|+|||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~----------~~q~~Ll~~l~~~-~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR----------NIQTGITFIIGKA-ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH----------HHHHHHHHHHHHH-TTTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH----------HHHHHHHHHHHhC-CCCCEEEEEecCCC
Confidence 455666554 46999999999954 3344455555532 24557788888854
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.41 E-value=7.9e-13 Score=153.86 Aligned_cols=209 Identities=24% Similarity=0.334 Sum_probs=128.9
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEEeCcch
Q 003807 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEF 427 (794)
Q Consensus 351 ~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~p---fi~is~se~ 427 (794)
..++.+|++++|++.+++.+...+. . ...++|+||||||||++|+++|+.+... .+.+.+...
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---~-----------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---Q-----------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---T-----------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccccccceEECchhhHhhcccccc---C-----------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 3445689999999999877766554 1 1379999999999999999999987432 222211111
Q ss_pred hh--------------h------------------------------------------hhhhhhHHHHHHHHH------
Q 003807 428 EE--------------M------------------------------------------FVGVGARRVRSLFQA------ 445 (794)
Q Consensus 428 ~e--------------~------------------------------------------~vG~~~~~vr~lF~~------ 445 (794)
.. . ++.........+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 00 0 000000011122210
Q ss_pred -----------------HHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc-------------------cc
Q 003807 446 -----------------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-------------------EQ 489 (794)
Q Consensus 446 -----------------Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~-------------------~~ 489 (794)
.....+.+|||||+|.+. ...++.|+..|+.- ..
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhCC----------HHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 111245699999999983 24555666655521 11
Q ss_pred CCcEEEEEEcCCC--CCCChhhcCCCccc---eEEEccC--C-CHHHHHHHHHHHhccCC---CCCcccHHH---H----
Q 003807 490 NEGIILMAATNLP--DILDPALTRPGRFD---RHIVVPN--P-DVRGRQEILELYLQDKP---LADDVDVKA---I---- 551 (794)
Q Consensus 490 ~~~VIVIaATN~p--~~LD~ALlRpGRFd---r~I~V~l--P-d~~eR~eILk~~l~~~~---l~~dvdl~~---I---- 551 (794)
...+.||++||+. +.++++|++ ||+ ..+.++. + +......+++.+.+... ....++.+. |
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 2357899999976 679999998 886 4555543 2 23345555544332111 112233222 2
Q ss_pred -------------HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 003807 552 -------------ARDLANLVNIAAIKAAVDGGEKLTATELEFAKDR 585 (794)
Q Consensus 552 -------------ArDL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~r 585 (794)
.+++.++++.|...|..+++..|+.+|+.+|+.+
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 2367899999999998899999999999999864
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.39 E-value=1.1e-11 Score=134.76 Aligned_cols=220 Identities=16% Similarity=0.158 Sum_probs=139.7
Q ss_pred CcccccCCHHHHHHHHHHH-HHhcCchhhhhcCCCCCceEEE--EcCCCCcHHHHHHHHHHhc---------CCCEEEEe
Q 003807 356 TFKDVKGCDDAKQELVEVV-EYLKNPSKFTRLGGKLPKGILL--TGAPGTGKTLLAKAIAGEA---------GVPFFYRA 423 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV-~~Lk~p~~~~~lG~~~PkgVLL--~GPPGTGKT~LArAIA~ea---------g~pfi~is 423 (794)
..++++|.++..+.|.+.+ ...... ....+..++| +||||||||++++++++++ +.++++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3478999999988888877 543221 0023557999 9999999999999999876 56788888
Q ss_pred Ccchhh------hh---h-------hhhhHH-HHHHHHHHH-hCCCeEEEEcCcccccccccccccchHHHHHHHHHhhh
Q 003807 424 GSEFEE------MF---V-------GVGARR-VRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD 485 (794)
Q Consensus 424 ~se~~e------~~---v-------G~~~~~-vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLD 485 (794)
|..... .. . +..... ...+..... ...|.+|+|||+|.+...+. .....+..++..++
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~----~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR----IAAEDLYTLLRVHE 169 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT----SCHHHHHHHHTHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC----cchHHHHHHHHHHH
Confidence 743211 10 1 111111 222222222 35588999999999954211 12456666666665
Q ss_pred cccc-C--CcEEEEEEcCCCC---CCC---hhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCC---CCcccHHHHHH
Q 003807 486 GFEQ-N--EGIILMAATNLPD---ILD---PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPL---ADDVDVKAIAR 553 (794)
Q Consensus 486 g~~~-~--~~VIVIaATN~p~---~LD---~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l---~~dvdl~~IAr 553 (794)
.... . .++.+|++||.++ .++ +.+.+ +|...+.+++++.++..++++.++..... .++.....+++
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 4421 2 6788888887665 234 55656 56566999999999999999877643211 11112222322
Q ss_pred -------------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 003807 554 -------------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 587 (794)
Q Consensus 554 -------------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~ 587 (794)
.+.+++..|...|..++...++.+++..++....
T Consensus 248 ~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 248 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 3556666676777777778899999988887653
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.38 E-value=1e-11 Score=133.99 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=100.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCcchhhhhhhhhhHHHHHH
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSL 442 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~eag~p------------------------fi~is~se~~e~~vG~~~~~vr~l 442 (794)
.+++|..+||+||||||||++|+++|+.+.++ ++.++..+- -...+...++++
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l 96 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREV 96 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHH
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHH
Confidence 35678889999999999999999999987643 233322100 011234567787
Q ss_pred HHHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceE
Q 003807 443 FQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRH 518 (794)
Q Consensus 443 F~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~ 518 (794)
++.+.. ..+.|++|||+|.+. ....|.|+..++. +..++++|.+||.++.+.+.+++ |+ ..
T Consensus 97 ~~~~~~~~~~~~~kvviIdead~l~----------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~ 161 (334)
T 1a5t_A 97 TEKLNEHARLGGAKVVWVTDAALLT----------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC-RL 161 (334)
T ss_dssp HHHTTSCCTTSSCEEEEESCGGGBC----------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS-EE
T ss_pred HHHHhhccccCCcEEEEECchhhcC----------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc-ee
Confidence 777653 346899999999994 3567888988885 45567888889999999999998 66 57
Q ss_pred EEccCCCHHHHHHHHHHHh
Q 003807 519 IVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 519 I~V~lPd~~eR~eILk~~l 537 (794)
+.|++|+.++..++++...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC
T ss_pred eeCCCCCHHHHHHHHHHhc
Confidence 9999999999999998765
No 84
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.36 E-value=9.3e-13 Score=167.03 Aligned_cols=150 Identities=17% Similarity=0.240 Sum_probs=109.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHH-hcC----------chhhhh------cC----------CCCCce--EEEEcCCCC
Q 003807 352 KNVKTFKDVKGCDDAKQELVEVVEY-LKN----------PSKFTR------LG----------GKLPKG--ILLTGAPGT 402 (794)
Q Consensus 352 ~~~~tFdDVvG~deaK~eL~eiV~~-Lk~----------p~~~~~------lG----------~~~Pkg--VLL~GPPGT 402 (794)
...++|+||.|.+++|+.+.+.+.+ ++. ++.|.. .| +-+|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 3447899999999999999998877 522 445554 22 336777 999999999
Q ss_pred cHHHHHHHHHHhc---CCCEEEEeCcchh------------hhhhhh----hhHHHHHHHHHHHhCCCeEEEEcCccccc
Q 003807 403 GKTLLAKAIAGEA---GVPFFYRAGSEFE------------EMFVGV----GARRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 403 GKT~LArAIA~ea---g~pfi~is~se~~------------e~~vG~----~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
|||+||++++.+. |-|.++++..+.. +.+++. +++.++.+|..|+..+||+||+|++|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5677777766533 445566 78999999999999999999999999999
Q ss_pred ccccc---cc----cchHHHHHHHHHhhhccccCCcEEEEEEcCCC
Q 003807 464 STRKQ---WE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (794)
Q Consensus 464 ~~r~~---~~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p 502 (794)
+.+.. .. +-..+.++|+|.+|++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 87431 11 22356799999999998888888888 66654
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=1.7e-11 Score=131.64 Aligned_cols=142 Identities=11% Similarity=0.152 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc------CCCEEEEeCcchhhhhhhhh
Q 003807 362 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------GVPFFYRAGSEFEEMFVGVG 435 (794)
Q Consensus 362 G~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea------g~pfi~is~se~~e~~vG~~ 435 (794)
|++++.+.|+..+. .++ +..+|||||||||||++|+++|+.+ ...++.++++.- ..+
T Consensus 1 g~~~~~~~L~~~i~-----------~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIE-----------KSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHH-----------TCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHH-----------CCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 56666666666554 123 4489999999999999999999864 346777775421 123
Q ss_pred hHHHHHHHHHHHhC----CCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcC
Q 003807 436 ARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR 511 (794)
Q Consensus 436 ~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlR 511 (794)
...++++++.+... ...|++|||+|.+. ....|.||..|+. +...+++|.+||.++.+.+++++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt----------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S 131 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT----------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS 131 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC----------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC----------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc
Confidence 45678888877542 24699999999994 3567889999985 44567777788889999999998
Q ss_pred CCccceEEEccCCCHHHHHHHHHHHh
Q 003807 512 PGRFDRHIVVPNPDVRGRQEILELYL 537 (794)
Q Consensus 512 pGRFdr~I~V~lPd~~eR~eILk~~l 537 (794)
| ++.|++|+.++..+.++..+
T Consensus 132 --R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 132 --R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp --T---SEEEECCCCHHHHHHHHHHH
T ss_pred --e---eEeCCCCCHHHHHHHHHHHh
Confidence 6 78999999999999998876
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.23 E-value=3.3e-11 Score=133.08 Aligned_cols=196 Identities=20% Similarity=0.302 Sum_probs=123.9
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh--
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF-- 431 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~-- 431 (794)
|++++|.+...+.+.+.+..+.... ..|||+|++|||||++|++++... +.||+.++|+.+.+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~----------~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAE----------CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCC----------SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCC----------CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 5678888888788877777554332 368999999999999999998876 4799999998864321
Q ss_pred ---hh--------hhhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCC
Q 003807 432 ---VG--------VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 491 (794)
Q Consensus 432 ---vG--------~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~ 491 (794)
.| ... .....|..|.. .+||||||+.+.. ..+..|+..++.-. ...
T Consensus 206 ~elfg~~~g~~tga~~-~~~g~~~~a~~---gtlfldei~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVS-SKEGFFELADG---GTLFLDEIGELSL----------EAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEEEEESGGGCCH----------HHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCccc-ccCCceeeCCC---cEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeec
Confidence 11 111 12245555544 4999999999943 45555555554311 113
Q ss_pred cEEEEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhcc----CCCC-CcccHHHHHH--
Q 003807 492 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPLA-DDVDVKAIAR-- 553 (794)
Q Consensus 492 ~VIVIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR~e----ILk~~l~~----~~l~-~dvdl~~IAr-- 553 (794)
.+.||+|||. .+... .+.|+|.. .+.+..|..++|.+ +++++++. .... ..++.+.+..
T Consensus 272 ~~rii~at~~--~l~~~-~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNR--NIKEL-VKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESS--CHHHH-HHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCC--CHHHH-HHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 5789999994 33322 22344432 45566777777643 44444432 2222 2345444432
Q ss_pred ---------HHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 003807 554 ---------DLANLVNIAAIKAAVDGGEKLTATELEFA 582 (794)
Q Consensus 554 ---------DL~nlvn~Aal~Aa~~~~~~It~~dl~~A 582 (794)
+|+|++++|++.+ ....|+.+|+...
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 8889999888765 3457888887643
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.23 E-value=2.2e-10 Score=151.14 Aligned_cols=137 Identities=23% Similarity=0.313 Sum_probs=95.1
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHH---------------hCCCeEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAI-AGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAK---------------KKAPCIIF 455 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAI-A~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar---------------~~aP~ILf 455 (794)
+++||+||||||||++|+.+ +...+.+++.++++...+ ...+...+.... .+.++|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 58999999999999999554 544477888888876543 233444444321 12357999
Q ss_pred EcCcccccccccccccchHHHHHHHHHhhhccccC--------CcEEEEEEcCCCC-----CCChhhcCCCccceEEEcc
Q 003807 456 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN--------EGIILMAATNLPD-----ILDPALTRPGRFDRHIVVP 522 (794)
Q Consensus 456 IDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~--------~~VIVIaATN~p~-----~LD~ALlRpGRFdr~I~V~ 522 (794)
|||||.-...+- +.......+.+++. ..++... .++.+|||||.|. .|+++++| || ..+.++
T Consensus 1342 iDEinmp~~d~y-g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDKY-GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCSS-SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECC
T ss_pred eccccccccccc-CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeC
Confidence 999997433221 11123445555552 2233211 3589999999994 79999999 88 889999
Q ss_pred CCCHHHHHHHHHHHhcc
Q 003807 523 NPDVRGRQEILELYLQD 539 (794)
Q Consensus 523 lPd~~eR~eILk~~l~~ 539 (794)
.|+.+++..|+..+++.
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.05 E-value=6.1e-10 Score=108.59 Aligned_cols=133 Identities=13% Similarity=0.183 Sum_probs=77.1
Q ss_pred CCCcccccCC-HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchh
Q 003807 354 VKTFKDVKGC-DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFE 428 (794)
Q Consensus 354 ~~tFdDVvG~-deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~ 428 (794)
..+|+++++. +..++.+..+..++.+-.. ..+.+++|+||||||||+|++++++.+ |..++++++.++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNP------EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCG------GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccc------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 3589998874 3334444444444433221 224689999999999999999999876 6677788877765
Q ss_pred hhhhhhhhH-HHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC
Q 003807 429 EMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (794)
Q Consensus 429 e~~vG~~~~-~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (794)
..+...... ....++... ..|.+|+|||++..+.. ......+..++.... . .+..+|.+||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~~~-----~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 80 FRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSERLS-----DWQRELISYIITYRY---N-NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSCCC-----HHHHHHHHHHHHHHH---H-TTCEEEEECCCCS
T ss_pred HHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCcCC-----HHHHHHHHHHHHHHH---H-cCCCEEEEcCCCh
Confidence 543211100 001222222 25789999999865321 122344445554432 1 2345666777553
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.03 E-value=7.4e-10 Score=109.63 Aligned_cols=103 Identities=24% Similarity=0.273 Sum_probs=64.7
Q ss_pred CCCcccccCCHHH-HHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhh
Q 003807 354 VKTFKDVKGCDDA-KQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (794)
Q Consensus 354 ~~tFdDVvG~dea-K~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e 429 (794)
..+|+++++.+.. ++.+..+..++..... ...|++++|+||||||||++|+++++++ +.+++++++.++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 4589999987643 3233333333332211 1124789999999999999999999987 67899998887755
Q ss_pred hhhhhh-hHHHHHHHHHHHhCCCeEEEEcCccccc
Q 003807 430 MFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 430 ~~vG~~-~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
.+.... ...+..++..... +.+|+|||++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 432210 1112233333333 3599999998764
No 90
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.94 E-value=1.8e-09 Score=118.62 Aligned_cols=183 Identities=21% Similarity=0.321 Sum_probs=110.7
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCcchhhh-----
Q 003807 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEEM----- 430 (794)
Q Consensus 358 dDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~--pfi~is~se~~e~----- 430 (794)
.+++|.+....++.+.+..+.... ..+|++|++||||+++|++++...+. +|+.++|..+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~----------~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK----------APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC----------SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc----------hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 357898888888877776554322 25999999999999999999987754 3999999876432
Q ss_pred hhhhhh-------HHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccc---------cCCcEE
Q 003807 431 FVGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGII 494 (794)
Q Consensus 431 ~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~---------~~~~VI 494 (794)
..|... ......|+.|.. .+||||||+.+.. ..+..||..++.-. ....+.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQ----------RVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCH----------HHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCH----------HHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 111100 111234555543 4899999999943 45556666554311 112477
Q ss_pred EEEEcCCCCCCChhhcCCCccce-------EEEccCCCHHHH----HHHHHHHhcc----CCC-CCcccHHHHHH-----
Q 003807 495 LMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGR----QEILELYLQD----KPL-ADDVDVKAIAR----- 553 (794)
Q Consensus 495 VIaATN~p~~LD~ALlRpGRFdr-------~I~V~lPd~~eR----~eILk~~l~~----~~l-~~dvdl~~IAr----- 553 (794)
+|+|||. .+...+ ..|+|.. .+.+..|..++| ..++++++++ ... ...++.+.+..
T Consensus 266 ii~at~~--~l~~~v-~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 266 VISATNK--NLEEEI-KKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EEEEESS--CHHHHH-HTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EEEecCC--CHHHHH-HcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 9999993 333322 3355533 445556666655 3455555532 221 12344443332
Q ss_pred ------HHHHHHHHHHHHH
Q 003807 554 ------DLANLVNIAAIKA 566 (794)
Q Consensus 554 ------DL~nlvn~Aal~A 566 (794)
+|.|++++|+..+
T Consensus 343 wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 343 WKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHhC
Confidence 7777777776543
No 91
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.82 E-value=2.2e-09 Score=116.26 Aligned_cols=115 Identities=20% Similarity=0.227 Sum_probs=73.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCC--EEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccccccc-
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ- 468 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~p--fi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~- 468 (794)
..++|+||||||||+||.++|.+.|.+ |+.....+....+.......+..+++...... +|+||+++.+......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 457999999999999999999875544 55552233333333333445555666665554 9999999999654322
Q ss_pred -cccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhh
Q 003807 469 -WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 509 (794)
Q Consensus 469 -~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~AL 509 (794)
..+...+.+.+++..|.++....++.+|.++| +...|+++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 11122466778888887776666778888888 56666654
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.82 E-value=6.7e-09 Score=99.85 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=66.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 467 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~ 467 (794)
...++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+|+|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH--
Confidence 3479999999999999999999987 777888888776542 11235789999999987432
Q ss_pred ccccchHHHHHHHHHhhhccccCCc-EEEEEEcCCCCCCC--hhhcCCCccceEEE
Q 003807 468 QWEGHTKKTLHQLLVEMDGFEQNEG-IILMAATNLPDILD--PALTRPGRFDRHIV 520 (794)
Q Consensus 468 ~~~~~~~~~LnqLL~eLDg~~~~~~-VIVIaATN~p~~LD--~ALlRpGRFdr~I~ 520 (794)
.++.+..+++.+. .... ++||++...|..+. +.|.+ ||..-..
T Consensus 99 -----~~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~ 144 (149)
T 2kjq_A 99 -----EQALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLV 144 (149)
T ss_dssp -----HHHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEE
T ss_pred -----HHHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCee
Confidence 1344444444332 2222 35554443555443 67766 6654333
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.77 E-value=2.5e-08 Score=112.73 Aligned_cols=202 Identities=18% Similarity=0.209 Sum_probs=112.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHH-HHhcCCCEEEEeCc--chhhhhhhh--
Q 003807 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAI-AGEAGVPFFYRAGS--EFEEMFVGV-- 434 (794)
Q Consensus 360 VvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAI-A~eag~pfi~is~s--e~~e~~vG~-- 434 (794)
|+|++.+|..|.-.+ +....+ .+-..+|||.|+||| ||++|+++ ++-+.... +.++. .... ..+.
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~g-Lt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTD-LTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHH-HSEEEE
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccC-ceEEEE
Confidence 899999877763322 111111 111236999999999 99999999 76554332 22221 1000 0000
Q ss_pred ---hhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhcc-------ccCCcEEEEEEcCCCC-
Q 003807 435 ---GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-------EQNEGIILMAATNLPD- 503 (794)
Q Consensus 435 ---~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~-------~~~~~VIVIaATN~p~- 503 (794)
+...-...+..|.. .|+|||||+.+. ..++..|++.|+.- .-+..+.||||+|..+
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~----------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGAP----------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTCC----------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhCC----------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 00000112233333 499999999984 35666777666531 2245688999999765
Q ss_pred ----------CCChhhcCCCccceEEE-ccCCCHHHHH---------HHHHH---HhccCCCCCccc---HHHHH-----
Q 003807 504 ----------ILDPALTRPGRFDRHIV-VPNPDVRGRQ---------EILEL---YLQDKPLADDVD---VKAIA----- 552 (794)
Q Consensus 504 ----------~LD~ALlRpGRFdr~I~-V~lPd~~eR~---------eILk~---~l~~~~l~~dvd---l~~IA----- 552 (794)
.|+++++. |||..+. ++.|+.+.-. +.++. +.+.......++ .+.|.
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~ 429 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET 429 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence 78889998 9998654 4566543311 12222 222111111111 11111
Q ss_pred --------------------HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 553 --------------------RDLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 553 --------------------rDL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
|.+..+++.|...|..+++..|+.+|+..|+.-+
T Consensus 430 tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 430 RREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 2455677777788888888889999888888644
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.75 E-value=1.2e-08 Score=109.19 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=60.8
Q ss_pred CCcccccCCHHH-HHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchhh
Q 003807 355 KTFKDVKGCDDA-KQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEE 429 (794)
Q Consensus 355 ~tFdDVvG~dea-K~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~e 429 (794)
.+|+++.+.+.. +..+..+..++.... ...+.+++|+||||||||+||+++|.++ +.++++++++++..
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 589999875532 223333333333211 1124689999999999999999999855 47888888887755
Q ss_pred hhhhhh-hHHHHHHHHHHHhCCCeEEEEcCccccc
Q 003807 430 MFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 430 ~~vG~~-~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
.+.... ......++.... .+.+|||||++...
T Consensus 195 ~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 195 DVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred HHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 433211 111122223332 24699999997653
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.67 E-value=5.3e-07 Score=95.22 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=97.0
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh-------
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE------- 428 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~------- 428 (794)
..+.++|.++..+.|.+ +. . ..++|+||+|+|||+|++.++++.+.+++++++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCH
Confidence 45677999887666655 32 2 3799999999999999999999988778888876430
Q ss_pred hhhhhh---------------------------------------hhHHHHHHHHHHHhC--CCeEEEEcCccccccccc
Q 003807 429 EMFVGV---------------------------------------GARRVRSLFQAAKKK--APCIIFIDEIDAVGSTRK 467 (794)
Q Consensus 429 e~~vG~---------------------------------------~~~~vr~lF~~Ar~~--aP~ILfIDEIDaL~~~r~ 467 (794)
..+... ....+..+++..... .|.+|+|||++.+....+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc
Confidence 000000 012244555554442 389999999999854210
Q ss_pred ccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCC---------hhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003807 468 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD---------PALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 468 ~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD---------~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~ 538 (794)
......+..+. +.. .++.+|.+++....+. ..+ .||+...+.+++.+.++..++++..+.
T Consensus 155 ---~~~~~~l~~~~---~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 155 ---VNLLPALAYAY---DNL---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp ---CCCHHHHHHHH---HHC---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHH---HcC---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHH
Confidence 11122333332 221 2455555555321111 112 246677899999999999999988765
Q ss_pred c
Q 003807 539 D 539 (794)
Q Consensus 539 ~ 539 (794)
.
T Consensus 224 ~ 224 (357)
T 2fna_A 224 E 224 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 96
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.66 E-value=3.2e-08 Score=99.99 Aligned_cols=132 Identities=18% Similarity=0.272 Sum_probs=82.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh--------cC-CCEEEEeCcchhhhhh----------hhhhH--HHHHHHHHH--
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGE--------AG-VPFFYRAGSEFEEMFV----------GVGAR--RVRSLFQAA-- 446 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~e--------ag-~pfi~is~se~~e~~v----------G~~~~--~vr~lF~~A-- 446 (794)
.+--.|++|+||||||++|.+.+.. .| .++++.++.++..... ..... ....+++.+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 3446899999999999999886443 35 7777777665532111 01000 112233321
Q ss_pred HhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCH
Q 003807 447 KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDV 526 (794)
Q Consensus 447 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~ 526 (794)
..+..+||+|||++.+.+.+...... ..++..++. ....++-||.+|+.++.|+.+++. |++.+++++.|..
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~e~-----~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGSKI-----PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTCCC-----CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred cccCceEEEEEChhhhccCccccchh-----HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 23446899999999996544221111 124444443 234456667788889999999887 9999999988765
Q ss_pred HHH
Q 003807 527 RGR 529 (794)
Q Consensus 527 ~eR 529 (794)
..+
T Consensus 156 ~~~ 158 (199)
T 2r2a_A 156 GMR 158 (199)
T ss_dssp CCE
T ss_pred Ccc
Confidence 443
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.59 E-value=1.8e-06 Score=91.12 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=95.8
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh-------
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE------- 428 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~------- 428 (794)
.-+.++|.++..+.|.+.+.. | ..++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 345679999988888776651 1 4799999999999999999999886 6677664331
Q ss_pred -----hhhh--------------------hhh----hHHHHHHHHH----HHhCCCeEEEEcCcccccccccccccchHH
Q 003807 429 -----EMFV--------------------GVG----ARRVRSLFQA----AKKKAPCIIFIDEIDAVGSTRKQWEGHTKK 475 (794)
Q Consensus 429 -----e~~v--------------------G~~----~~~vr~lF~~----Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 475 (794)
..+. +.. ...+.++++. +....|.+|+|||++.+..... .....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~~~~ 150 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RGGKE 150 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TTTHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cchhh
Confidence 0000 000 0122333322 2222489999999999854100 01123
Q ss_pred HHHHHHHhhhccccCCcEEEEEEcCCCC---------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC
Q 003807 476 TLHQLLVEMDGFEQNEGIILMAATNLPD---------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 540 (794)
Q Consensus 476 ~LnqLL~eLDg~~~~~~VIVIaATN~p~---------~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~ 540 (794)
.+..|-..++.. .++.+|.++.... .....+ .||+...+.+++.+.++-.++++..+...
T Consensus 151 ~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~ 219 (350)
T 2qen_A 151 LLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREV 219 (350)
T ss_dssp HHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 333333333322 2455555544221 111122 24666789999999999999998876543
No 98
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.57 E-value=3.8e-08 Score=108.72 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=78.3
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCcccccc-
Q 003807 386 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS- 464 (794)
Q Consensus 386 lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~- 464 (794)
++.+.+..++|+||||+|||++++++++..+..++.+...+-...+ .+..+ ....++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~------~lg~~------~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF------ELGVA------IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHH------HHGGG------TTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHH------HHHHh------cchhHHHHHHHHHHHHH
Confidence 3666777899999999999999999999887766654332211000 11111 2335789999999865
Q ss_pred cccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccC
Q 003807 465 TRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 523 (794)
Q Consensus 465 ~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~l 523 (794)
.+....+........+...++| .+.|+.+||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~~~~~~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGINNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHHHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcchHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2221111111123444555554 24567889999999 79999999998777654
No 99
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.53 E-value=2e-07 Score=80.07 Aligned_cols=68 Identities=19% Similarity=0.374 Sum_probs=63.8
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcc
Q 003807 522 PNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 589 (794)
Q Consensus 522 ~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g 589 (794)
|+||.++|.+||+.|+++.++..++|+..||+ ||.++|++|++.|.+++...|+++||..|+++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999998888999999998 999999999999999999999999999999998653
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.49 E-value=2.5e-06 Score=113.95 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=87.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEeCcchhhhhhhhhhHHHHHHHHHH----H------------hCCCeEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAGSEFEEMFVGVGARRVRSLFQAA----K------------KKAPCII 454 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea-g~pfi~is~se~~e~~vG~~~~~vr~lF~~A----r------------~~aP~IL 454 (794)
++|||+||||||||++++...... +.+++.++++.-.+ +..+...++.. + .+...|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 479999999999998776554443 66778888876533 23333333321 0 1223699
Q ss_pred EEcCcccccccccccc-cchHHHHHHHHHhhhccc--------cCCcEEEEEEcCCC-----CCCChhhcCCCccceEEE
Q 003807 455 FIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFE--------QNEGIILMAATNLP-----DILDPALTRPGRFDRHIV 520 (794)
Q Consensus 455 fIDEIDaL~~~r~~~~-~~~~~~LnqLL~eLDg~~--------~~~~VIVIaATN~p-----~~LD~ALlRpGRFdr~I~ 520 (794)
||||++.-.. +.++ ...-..+.+++..- ++. .-.++.+|||+|.| ..|+++++| || ..+.
T Consensus 1379 FiDDiNmp~~--D~yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi~ 1452 (3245)
T 3vkg_A 1379 FCDEINLPST--DKYGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PILL 1452 (3245)
T ss_dssp EETTTTCCCC--CTTSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEEE
T ss_pred EecccCCCCc--cccccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEEE
Confidence 9999985322 2111 11234445554321 111 12357899999988 358999999 88 4599
Q ss_pred ccCCCHHHHHHHHHHHhc
Q 003807 521 VPNPDVRGRQEILELYLQ 538 (794)
Q Consensus 521 V~lPd~~eR~eILk~~l~ 538 (794)
++.|+.+....|+..++.
T Consensus 1453 i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999999876654
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.48 E-value=1.4e-06 Score=115.47 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=91.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 471 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~ 471 (794)
.|+++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+... ++++++||++.+...
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~e------ 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDEK------ 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHH------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcChH------
Confidence 47999999999999999999999999999999987644 24456677666554 379999999998431
Q ss_pred chHHHHHHHH----Hhhhc-----------cccCCcEEEEEEcC----CCCCCChhhcCCCccceEEEccCCCHHHHHHH
Q 003807 472 HTKKTLHQLL----VEMDG-----------FEQNEGIILMAATN----LPDILDPALTRPGRFDRHIVVPNPDVRGRQEI 532 (794)
Q Consensus 472 ~~~~~LnqLL----~eLDg-----------~~~~~~VIVIaATN----~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eI 532 (794)
....+++.+ ..+.. +.-+....|++|.| ....|+++|++ || +.+.+..||.+...+|
T Consensus 713 -vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei 788 (2695)
T 4akg_A 713 -VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEM 788 (2695)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHH
Confidence 222332222 22211 11233456778888 34579999998 88 7899999999988888
Q ss_pred HH
Q 003807 533 LE 534 (794)
Q Consensus 533 Lk 534 (794)
+-
T Consensus 789 ~l 790 (2695)
T 4akg_A 789 IL 790 (2695)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 102
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.44 E-value=3.6e-07 Score=80.52 Aligned_cols=69 Identities=17% Similarity=0.335 Sum_probs=64.7
Q ss_pred ccCCCHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcc
Q 003807 521 VPNPDVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 589 (794)
Q Consensus 521 V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g 589 (794)
-.+||.++|.+||+.++++.++..++|+..||+ ||.++|++|++.|.+++...|+++||..|++++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 368999999999999999998888999999998 999999999999999999999999999999998764
No 103
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.43 E-value=4.7e-07 Score=79.90 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcccccccc
Q 003807 525 DVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTM 595 (794)
Q Consensus 525 d~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g~~~k~~ 595 (794)
|.++|.+||+.|+++.++..++|+..||+ ||.++|++|++.|.+++...|+++||..|++++..|..+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 66899999999999999989999999998 999999999999999999999999999999999999877653
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.42 E-value=3.9e-07 Score=117.56 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=81.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh----hhhhh------------hhhHHHHHHHHHHHh
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE----EMFVG------------VGARRVRSLFQAAKK 448 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~----e~~vG------------~~~~~vr~lF~~Ar~ 448 (794)
.+.+++++|+||||||||+||.+++.++ |....+++..+.. ....| .+++.++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 5667889999999999999999998876 5566666655431 11112 234566777778888
Q ss_pred CCCeEEEEcCcccccccccc----cc-cc--hHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 449 KAPCIIFIDEIDAVGSTRKQ----WE-GH--TKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 449 ~aP~ILfIDEIDaL~~~r~~----~~-~~--~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
.+|++|||||++.+.+.+.. .+ .. ..+.++++|.+|.++....+++||.+..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 99999999999988764311 11 11 2567789999999888888888776543
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.21 E-value=4.9e-06 Score=89.26 Aligned_cols=173 Identities=16% Similarity=0.106 Sum_probs=108.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CC-CEEEEeCcchhhhhhhhhhHHHHHHHHHHHh----CCCeEEEEcCcc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GV-PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEID 460 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~-pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEID 460 (794)
+.+..+|||||+|+||+..+++++..+ +. ++..+... + ...++++++.+.. ....|++|||+|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 455689999999999999999998865 32 32222111 1 1234555555432 345799999999
Q ss_pred c-ccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC------CCChhhcCCCccceEEEccCCCHHHHHHHH
Q 003807 461 A-VGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD------ILDPALTRPGRFDRHIVVPNPDVRGRQEIL 533 (794)
Q Consensus 461 a-L~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~------~LD~ALlRpGRFdr~I~V~lPd~~eR~eIL 533 (794)
. +.. ...+.|+..++.. ..++++|.+|+.++ .+-+++.+ |. .++.+.+++..+....+
T Consensus 87 ~kl~~----------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 87 NGPNA----------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp SCCCT----------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHH
T ss_pred CCCCh----------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHH
Confidence 8 632 4566777777753 33444444444332 34566665 43 57899999999999999
Q ss_pred HHHhccCCCC-CcccHHHHHH----HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 003807 534 ELYLQDKPLA-DDVDVKAIAR----DLANLVNIAAIKAAVDGGEKLTATELEFAKDR 585 (794)
Q Consensus 534 k~~l~~~~l~-~dvdl~~IAr----DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~r 585 (794)
+..++..++. +...+..+++ |+..+.++....+...+...||.++++..+..
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 9888766543 2223445555 45544444433333324468999998877654
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.16 E-value=1.3e-06 Score=89.12 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPF 419 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pf 419 (794)
.+++|||||||||||++|.++|+.++..+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 36899999999999999999999986543
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.00 E-value=2.8e-05 Score=76.69 Aligned_cols=28 Identities=43% Similarity=0.654 Sum_probs=24.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
.+.|.||+|+|||||++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998875543
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.94 E-value=4e-05 Score=102.79 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=88.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhhhhhhhhhHHHHHHHHHHHhCCCeEEEEcCccccccccccccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 471 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~ 471 (794)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|.-+... .+..++|||+.+...
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~------ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEER------ 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHH------
Confidence 367899999999999999999999999999999875432 2344556555443 368999999998331
Q ss_pred chHHHHHHHHHh-------------hh-c--cccCCcEEEEEEcCC----CCCCChhhcCCCccceEEEccCCCHHHHHH
Q 003807 472 HTKKTLHQLLVE-------------MD-G--FEQNEGIILMAATNL----PDILDPALTRPGRFDRHIVVPNPDVRGRQE 531 (794)
Q Consensus 472 ~~~~~LnqLL~e-------------LD-g--~~~~~~VIVIaATN~----p~~LD~ALlRpGRFdr~I~V~lPd~~eR~e 531 (794)
.-..+.+.+.. ++ | +.-+.+..|++|.|. ...|+++|.. || +.|.+..||.+...+
T Consensus 672 -vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~e 747 (3245)
T 3vkg_A 672 -ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQ 747 (3245)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHH
Confidence 11222221111 11 2 122335667778883 3579999998 88 779999999998888
Q ss_pred HHH
Q 003807 532 ILE 534 (794)
Q Consensus 532 ILk 534 (794)
|+-
T Consensus 748 i~L 750 (3245)
T 3vkg_A 748 VML 750 (3245)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 109
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.93 E-value=1.1e-05 Score=69.86 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcc
Q 003807 525 DVRGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 589 (794)
Q Consensus 525 d~~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g 589 (794)
|.++|.+||+.|+++.++.+++|+..||+ ||.++|++|++.|.+++...|+++||..|+.++..+
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 67899999999999998888999999998 999999999999999998999999999999998654
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.92 E-value=3.6e-05 Score=76.32 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
...++|+||||+|||+|++.++... +.++++++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3468899999999999999998654 5566666543
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.89 E-value=4.3e-05 Score=75.59 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
+...-++|+||||+|||+|++.++...+.+.++++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 33445899999999999999999986677888887654
No 112
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.89 E-value=6.5e-05 Score=79.28 Aligned_cols=27 Identities=41% Similarity=0.422 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGV 417 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~ 417 (794)
.++++||||||||||++|++||+..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 358999999999999999999997654
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.84 E-value=4.6e-05 Score=85.52 Aligned_cols=130 Identities=21% Similarity=0.302 Sum_probs=68.7
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CC-CEEE
Q 003807 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GV-PFFY 421 (794)
Q Consensus 346 ~~~~p~~~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~-pfi~ 421 (794)
+.+.|...+.+|+++- ++.++.+..++.++.... ..++|.||||||||+++.+++..+ +. .++.
T Consensus 12 ~~~~~~~~p~~~~~Ln--~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLT--EGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp ---------CCSSCCC--HHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCccccCCCccccCC--HHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 4667778888999874 455555655565554421 279999999999999999998866 33 4444
Q ss_pred EeCcchhh----hhhhhhhHHHHHHHHHH----------------HhCCCeEEEEcCcccccccccccccchHHHHHHHH
Q 003807 422 RAGSEFEE----MFVGVGARRVRSLFQAA----------------KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (794)
Q Consensus 422 is~se~~e----~~vG~~~~~vr~lF~~A----------------r~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL 481 (794)
+....-.. ...+.....+..++... ......+|+|||+..+. ...+..|+
T Consensus 80 ~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~----------~~~~~~l~ 149 (459)
T 3upu_A 80 AAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD----------RKLFKILL 149 (459)
T ss_dssp EESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC----------HHHHHHHH
T ss_pred ecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC----------HHHHHHHH
Confidence 43322110 01122222222332210 00134699999998773 23455555
Q ss_pred HhhhccccCCcEEEEEEcC
Q 003807 482 VEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN 500 (794)
..+. ....++++|=.+
T Consensus 150 ~~~~---~~~~~~~vGD~~ 165 (459)
T 3upu_A 150 STIP---PWCTIIGIGDNK 165 (459)
T ss_dssp HHSC---TTCEEEEEECTT
T ss_pred Hhcc---CCCEEEEECCHH
Confidence 5543 345677777444
No 114
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.74 E-value=6.4e-06 Score=71.44 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcccc
Q 003807 527 RGRQEILELYLQDKPLADDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTE 591 (794)
Q Consensus 527 ~eR~eILk~~l~~~~l~~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri~~g~~ 591 (794)
++|.+||+.|+++.++.+++|+..||. ||.++|++|++.|.+++...|+++||..|+.++..|..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 478999999999988888999999987 99999999999999999999999999999999876643
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.72 E-value=0.00011 Score=80.87 Aligned_cols=112 Identities=17% Similarity=0.228 Sum_probs=66.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh----hhh-----------hhHHHHHHHHH-HHhC
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----VGV-----------GARRVRSLFQA-AKKK 449 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~----vG~-----------~~~~vr~lF~~-Ar~~ 449 (794)
+...-++|+||||+|||+||..+|..+ +.++++++...-.... .|. ....+...... .+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 334568999999999999999998764 6788888765422111 111 11222223322 2346
Q ss_pred CCeEEEEcCccccccccccc-c-c-----chHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 450 APCIIFIDEIDAVGSTRKQW-E-G-----HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 450 aP~ILfIDEIDaL~~~r~~~-~-~-----~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
.+++|+||.+..+....... . + ...+.+.+++..|..+-...++.||.+..
T Consensus 152 ~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 152 AIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp CCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 78999999999997532110 0 0 11244566666666554555666665543
No 116
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.70 E-value=6.3e-05 Score=75.52 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=48.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcch--hh----h--hhhh---------------hhH
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF--EE----M--FVGV---------------GAR 437 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se~--~e----~--~vG~---------------~~~ 437 (794)
...-++|+||||+|||+|++.++... +...+++++... .. . ..|. ...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 33458999999999999999999952 456777776551 10 0 0110 011
Q ss_pred ----HHHHHHHHHHhCCCeEEEEcCcccccc
Q 003807 438 ----RVRSLFQAAKKKAPCIIFIDEIDAVGS 464 (794)
Q Consensus 438 ----~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 464 (794)
.+..+........|.+|+|||+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 122233444556799999999998764
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.63 E-value=9.3e-05 Score=80.70 Aligned_cols=74 Identities=22% Similarity=0.192 Sum_probs=47.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh----hhhh-----------hhHHHHHH-HHHHHhCCC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVGV-----------GARRVRSL-FQAAKKKAP 451 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~----~vG~-----------~~~~vr~l-F~~Ar~~aP 451 (794)
..-++|+||||+|||+||..++..+ +.+.++++...-... ..|. ....+..+ ...++...|
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 3458999999999999999998754 567777776542111 1111 11112222 223335679
Q ss_pred eEEEEcCcccccc
Q 003807 452 CIIFIDEIDAVGS 464 (794)
Q Consensus 452 ~ILfIDEIDaL~~ 464 (794)
.+|+||++..+..
T Consensus 141 ~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 141 DIIVIDSVAALVP 153 (349)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcChHhhcc
Confidence 9999999999974
No 118
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.58 E-value=0.00014 Score=69.89 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=32.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
|+-|+|+|+||+||||++++++..++.+|+.++...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 45799999999999999999999999999887765553
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=0.00021 Score=78.32 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=64.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh----hhh------------hhhHHHHHHHHHHHhCCCe
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVG------------VGARRVRSLFQAAKKKAPC 452 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~----~vG------------~~~~~vr~lF~~Ar~~aP~ 452 (794)
.-++|+||||+|||+|+..++..+ +.++++++....... -.| .....+..+....+...|.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 458899999999999999998864 667888877542110 001 0111222222223346789
Q ss_pred EEEEcCccccccccc--cccc-----chHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 453 IIFIDEIDAVGSTRK--QWEG-----HTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 453 ILfIDEIDaL~~~r~--~~~~-----~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
+++||.+..+.+... ...+ ...+.+.+++..|..+....++.||.+
T Consensus 142 lvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 142 LIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp EEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred eEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999998875211 0001 123556677776666655556555554
No 120
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.56 E-value=0.00012 Score=94.87 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhhh----h------------hhhHHHHHHHHHHHh
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV----G------------VGARRVRSLFQAAKK 448 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~v----G------------~~~~~vr~lF~~Ar~ 448 (794)
.+....++|+||||||||+||.+++.++ |.+..+++..+..+... | .++...+-.....+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~ 1157 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1157 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHh
Confidence 4555679999999999999999997754 78888888876533322 1 111223333344456
Q ss_pred CCCeEEEEcCccccccccccc---c----cchHHHHHHHHHhhhccccCCcEEEEEEcCC
Q 003807 449 KAPCIIFIDEIDAVGSTRKQW---E----GHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (794)
Q Consensus 449 ~aP~ILfIDEIDaL~~~r~~~---~----~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~ 501 (794)
.+|++|+||++..+.+..... . +-..+.+.++|..+.+.....++++|.+...
T Consensus 1158 ~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1158 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1217 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 779999999999995533211 0 1122344455555544444566666665443
No 121
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.56 E-value=0.0001 Score=79.13 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=65.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcch--hhh------hhhh----------------h
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF--EEM------FVGV----------------G 435 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se~--~e~------~vG~----------------~ 435 (794)
+...-++|+||||+|||+||..+|..+ +.+.++++...- .+. -.|. .
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 334458999999999999999999875 557788877652 110 0111 0
Q ss_pred h---HHHHHHHHHHHh-CCCeEEEEcCccccccccccccc---chHHHHHHHHHhhhccccCCcEEEEEEc
Q 003807 436 A---RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (794)
Q Consensus 436 ~---~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~---~~~~~LnqLL~eLDg~~~~~~VIVIaAT 499 (794)
. ..+..+....+. ..+.+|+||.+..+........+ ...+.+.+++..|..+....++.||.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 1 122233344455 67899999999998642111001 1123456666666655444455555543
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.54 E-value=0.00038 Score=70.01 Aligned_cols=126 Identities=23% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH--Hh--cCCCEEEEeCcchhhhh------hhh-------------------------
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIA--GE--AGVPFFYRAGSEFEEMF------VGV------------------------- 434 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA--~e--ag~pfi~is~se~~e~~------vG~------------------------- 434 (794)
...-+.|.||+|+|||+|++.++ .. .+...++++........ .|.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPS 108 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccc
Confidence 33458999999999999999998 33 34555555543221100 000
Q ss_pred -----------hhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC
Q 003807 435 -----------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (794)
Q Consensus 435 -----------~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (794)
.......+........|.+|+|||.-.+..... ......+.+..++..+. ..++.||.+|+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-d~~~~~~~l~~l~~~l~----~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 109 EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-EERKIREVLLKLNTILL----EMGVTTILTTEAPD 183 (251)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-SGGGHHHHHHHHHHHHH----HHCCEEEEEECCC-
T ss_pred ccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-CHHHHHHHHHHHHHHHH----HCCCeEEEEECCCC
Confidence 011122333334457899999999887753211 01122344566666553 22445666777655
Q ss_pred CCC-----hhhcCCCcc-ceEEEcc
Q 003807 504 ILD-----PALTRPGRF-DRHIVVP 522 (794)
Q Consensus 504 ~LD-----~ALlRpGRF-dr~I~V~ 522 (794)
... ..+.. -+ |+++.+.
T Consensus 184 ~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 184 PQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp ---CCSSSSSCGG--GGCSEEEEEE
T ss_pred CCcccccccChhh--EeeeEEEEEe
Confidence 441 11221 35 7777664
No 123
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.51 E-value=0.00018 Score=78.74 Aligned_cols=113 Identities=17% Similarity=0.229 Sum_probs=65.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh----hhhh-----------hhHHHHHHHHH-HHh
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVGV-----------GARRVRSLFQA-AKK 448 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~----~vG~-----------~~~~vr~lF~~-Ar~ 448 (794)
.+...-++|+||||+|||+||..+|..+ +.++++++...-.+. -.|. ....+..++.. .+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3344569999999999999999998764 678888887432111 0111 11223333332 235
Q ss_pred CCCeEEEEcCcccccccccc--ccc-----chHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 449 KAPCIIFIDEIDAVGSTRKQ--WEG-----HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 449 ~aP~ILfIDEIDaL~~~r~~--~~~-----~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
..+.+|+||.+..+...... ..+ ...+.+.+++..|..+-...++.||.+..
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 67899999999998742210 000 11124455555555444444556665433
No 124
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.42 E-value=0.00035 Score=75.72 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=63.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcch--hh----h--hhhh----------------hh--
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF--EE----M--FVGV----------------GA-- 436 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se~--~e----~--~vG~----------------~~-- 436 (794)
.-++|+||||+|||+||..+|..+ +.+.++++...- .+ . ..|. ..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~ 202 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQ 202 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHH
Confidence 448899999999999999999863 456778876552 11 0 0010 01
Q ss_pred -HHHHHHHHHHHh--CCCeEEEEcCcccccccccccccc---hHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 437 -RRVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGH---TKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 437 -~~vr~lF~~Ar~--~aP~ILfIDEIDaL~~~r~~~~~~---~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
..+..+....+. ..+.+|+||.+..+....-...+. ..+.+.+++..|..+....++.||.+..
T Consensus 203 ~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 203 MELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 112222344445 678999999999986421110011 1234566666665554445556665544
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.37 E-value=0.0026 Score=78.11 Aligned_cols=150 Identities=11% Similarity=0.138 Sum_probs=85.3
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---C----CCEEEEeCcch
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---G----VPFFYRAGSEF 427 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ea---g----~pfi~is~se~ 427 (794)
....+++|.++..++|.+.+..- ...++-|.|+|+.|+|||+||+.+++.. . ..++.++.+..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34556899999888877665311 1224568899999999999999998752 1 12334443331
Q ss_pred hh-----hh------h----------hhhhHHHHHHHHHHHhC--CCeEEEEcCcccccccccccccchHHHHHHHHHhh
Q 003807 428 EE-----MF------V----------GVGARRVRSLFQAAKKK--APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 484 (794)
Q Consensus 428 ~e-----~~------v----------G~~~~~vr~lF~~Ar~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eL 484 (794)
.. .. . ......+...+...-.. .+.+|+||+++... .+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------~~ 251 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------VL 251 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------HH
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------HH
Confidence 00 00 0 01112223333333223 37899999997541 12
Q ss_pred hccccCCcEEEEEEcCCCCCCChhhcCCCccceEEEccC-CCHHHHHHHHHHHhcc
Q 003807 485 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN-PDVRGRQEILELYLQD 539 (794)
Q Consensus 485 Dg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~l-Pd~~eR~eILk~~l~~ 539 (794)
+.+. .+..||.||..+...... . .-...+.++. .+.++-.++|..+...
T Consensus 252 ~~~~--~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 252 KAFD--NQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp TTTC--SSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred Hhhc--CCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCC
Confidence 2222 233556677755443211 1 1234577775 8888888999887743
No 126
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.37 E-value=0.0017 Score=74.27 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=34.9
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 003807 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 357 FdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~ 413 (794)
...++|.+...+.|.+.+.. . ...++-|+|+||+|+|||+||+.++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSK---L-------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTT---S-------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhc---c-------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34579999987777665541 1 11235689999999999999999975
No 127
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.34 E-value=0.00024 Score=70.55 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC---------CCEEEEeCcc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSE 426 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag---------~pfi~is~se 426 (794)
..-+.|.||+|+|||+|++.+++..- ...++++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 34588999999999999999998542 2366666543
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.33 E-value=0.00083 Score=67.34 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
....-++|+||||+|||+|+..++... +.+.++++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 334468999999999999998887643 6677777654
No 129
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.31 E-value=0.00061 Score=73.78 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=60.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCcchhh-h---hhhh-----------hhHHH-HHHHHH---HHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEE-M---FVGV-----------GARRV-RSLFQA---AKK 448 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea-----g~pfi~is~se~~e-~---~vG~-----------~~~~v-r~lF~~---Ar~ 448 (794)
-++|+||||+|||+|+-.++.++ +..+++++..+-.. . -.|. ....+ -.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 46899999999999987776543 56788888654211 0 0111 11122 222222 245
Q ss_pred CCCeEEEEcCcccccccccc-c--c----c--chHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 449 KAPCIIFIDEIDAVGSTRKQ-W--E----G--HTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 449 ~aP~ILfIDEIDaL~~~r~~-~--~----~--~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
..|.+|+||-|.++.++..- . . + ...+.+++.|..|.++-+..++.+|.+
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 67999999999999753211 0 0 0 123456666666555544555555543
No 130
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.29 E-value=0.00068 Score=71.66 Aligned_cols=61 Identities=28% Similarity=0.341 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 364 DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 364 deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
++..+.+.+++..+.... .....|..++|.||||+||||+|+.++.+.+..++.+++..+.
T Consensus 10 ~~~~~~~~~~~~~~l~~~----~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGK----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHHHHHhccc----cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 444555555555433221 2334567899999999999999999999886556777775553
No 131
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.28 E-value=0.00068 Score=69.87 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=34.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchh
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~ 428 (794)
...|..++|.||||+||||+|+.++..++.+++.+++..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 44567899999999999999999999998777777877663
No 132
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.25 E-value=0.00065 Score=68.15 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEEeCc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGS 425 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~e----ag~pfi~is~s 425 (794)
+...-++|+|+||+|||+||..+|.. .+.++++++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 33345899999999999999887643 36778777654
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.24 E-value=0.00017 Score=69.86 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
++.|+|+||||+|||++++.+|..+|.+|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999998753
No 134
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.19 E-value=0.0074 Score=69.09 Aligned_cols=164 Identities=12% Similarity=0.139 Sum_probs=89.2
Q ss_pred cCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHH----hcCCCE---EEEeCcch-----h
Q 003807 361 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAG----EAGVPF---FYRAGSEF-----E 428 (794)
Q Consensus 361 vG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~----eag~pf---i~is~se~-----~ 428 (794)
+|.++.+++|.+.+..- +...++.|.|+|++|+|||+||+.+++ .....| +.++.+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49998888887766421 112245788999999999999999997 332221 23333321 1
Q ss_pred hh------hhhhh-------------hHHHHHHHHHHHhCC-CeEEEEcCcccccccccccccchHHHHHHHHHhhhccc
Q 003807 429 EM------FVGVG-------------ARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (794)
Q Consensus 429 e~------~vG~~-------------~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~ 488 (794)
.. ..+.. ...+...+...-... +++|+||+++... +. . +...
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~-----------~~--~-~~~~---- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE-----------TI--R-WAQE---- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH-----------HH--H-HHHH----
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch-----------hh--c-cccc----
Confidence 10 01110 111233333333343 7999999987641 11 1 1111
Q ss_pred cCCcEEEEEEcCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHH
Q 003807 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARDLANLV 559 (794)
Q Consensus 489 ~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk~~l~~~~l~~dvdl~~IArDL~nlv 559 (794)
.+..||.||....... .. +..+..+.++..+.++-.++|..+..... ...++..++++|...|
T Consensus 264 --~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c 326 (549)
T 2a5y_B 264 --LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELS 326 (549)
T ss_dssp --TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHH
T ss_pred --CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHh
Confidence 3335556776432211 11 11345789999999999999988753322 1234555555554443
No 135
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.17 E-value=0.001 Score=69.22 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-++|+||||+|||+|++.++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998743
No 136
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.17 E-value=0.00038 Score=74.16 Aligned_cols=111 Identities=11% Similarity=0.143 Sum_probs=63.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---------------C----CCEEEEeCcch--hhh------hhhh-------
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---------------G----VPFFYRAGSEF--EEM------FVGV------- 434 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---------------g----~pfi~is~se~--~e~------~vG~------- 434 (794)
+...-++|+||||+|||+||..+|..+ | .++++++...- .+. -.|.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLD 175 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence 333458999999999999999998753 2 56777776542 110 0011
Q ss_pred --------hhH----HHHHHHHHHHh-CCCeEEEEcCccccccccccc-c--cchHHHHHHHHHhhhccccCCcEEEEEE
Q 003807 435 --------GAR----RVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQW-E--GHTKKTLHQLLVEMDGFEQNEGIILMAA 498 (794)
Q Consensus 435 --------~~~----~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~-~--~~~~~~LnqLL~eLDg~~~~~~VIVIaA 498 (794)
... .+..+....+. ..+.+|+||.+..+....... . ....+.+.+++..|..+....++.||.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~ 255 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVT 255 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 001 12223334444 568899999999986421110 0 1112345666666665544555555554
Q ss_pred c
Q 003807 499 T 499 (794)
Q Consensus 499 T 499 (794)
.
T Consensus 256 n 256 (322)
T 2i1q_A 256 N 256 (322)
T ss_dssp E
T ss_pred C
Confidence 3
No 137
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.16 E-value=0.0012 Score=73.90 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=30.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 425 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~s 425 (794)
|.....-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34444568999999999999999998754 5688887754
No 138
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.15 E-value=0.00032 Score=67.94 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
..|.-|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 456679999999999999999999999988765
No 139
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.13 E-value=0.00089 Score=72.82 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE 426 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se 426 (794)
+...-+.|+||||+|||+|++.++... +...++++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 333458899999999999999999976 23557777644
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.11 E-value=0.00091 Score=74.34 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=60.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCcch-hh-------hhhhhh------------------
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-EE-------MFVGVG------------------ 435 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---------g~pfi~is~se~-~e-------~~vG~~------------------ 435 (794)
..-++|+||||+|||+|++.++-.. +...++++..+. .. .-.|..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHH
Confidence 3458999999999999999776433 234777776542 10 001100
Q ss_pred -hHHHHHHHHHHHhCCCeEEEEcCcccccccccccc---cchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 436 -ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 436 -~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~---~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
...+..+........|.+|+||++-.+....-... ...++.+.+++..|..+....++.||.++.
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 01122223334456799999999988764321111 111333455555555554444555665555
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.07 E-value=0.00078 Score=69.17 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=43.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc-------hhhhhhhhh-----hHHHHHHHHHHHh----CCCeE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE-------FEEMFVGVG-----ARRVRSLFQAAKK----KAPCI 453 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se-------~~e~~vG~~-----~~~vr~lF~~Ar~----~aP~I 453 (794)
-++++||+|+|||+++..++.++ |..++.+.... +.+. .|.. .....++++.++. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 47788999999999998887765 55666553222 1110 1110 1122356666654 34789
Q ss_pred EEEcCcccc
Q 003807 454 IFIDEIDAV 462 (794)
Q Consensus 454 LfIDEIDaL 462 (794)
|+|||++.+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999876
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.00031 Score=69.40 Aligned_cols=32 Identities=47% Similarity=0.568 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.+.++|.||||+||||+++++|+.++.+++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 45799999999999999999999999998753
No 143
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.07 E-value=0.00038 Score=68.83 Aligned_cols=30 Identities=17% Similarity=-0.046 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g~pfi~i 422 (794)
-++++||||+|||+++..++..+ +...+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999986666543 5555443
No 144
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.00 E-value=0.0069 Score=62.48 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~ 424 (794)
..|++.|+||+|||+++-.+|..+ |..+..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 359999999999999999998765 666655544
No 145
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.00 E-value=0.0011 Score=69.36 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=28.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeC
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 424 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~ 424 (794)
|.....-++|.||||+|||+|++.+|... |.++++++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33444568999999999999999998865 446666554
No 146
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.98 E-value=0.00046 Score=65.32 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998886543
No 147
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.98 E-value=0.0007 Score=78.54 Aligned_cols=96 Identities=26% Similarity=0.387 Sum_probs=55.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh----hhhhhhHHHHHHHHHH---------HhCCCeEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVGVGARRVRSLFQAA---------KKKAPCIIF 455 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~----~vG~~~~~vr~lF~~A---------r~~aP~ILf 455 (794)
..++|+||||||||+++++++..+ +.+++.+..+.-... ..+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 368999999999999999998754 666665543221111 1111122222222110 011347999
Q ss_pred EcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 456 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 456 IDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
|||+..+. ...+..|+..+. ....+++++-.+
T Consensus 285 IDEasml~----------~~~~~~Ll~~~~---~~~~lilvGD~~ 316 (574)
T 3e1s_A 285 VDEVSMMG----------DALMLSLLAAVP---PGARVLLVGDTD 316 (574)
T ss_dssp ECCGGGCC----------HHHHHHHHTTSC---TTCEEEEEECTT
T ss_pred EcCccCCC----------HHHHHHHHHhCc---CCCEEEEEeccc
Confidence 99998773 345566665443 455677777544
No 148
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.97 E-value=0.00041 Score=67.16 Aligned_cols=29 Identities=31% Similarity=0.609 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.|+|+|+||+|||++|+.++..+|.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 58999999999999999999999999775
No 149
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.96 E-value=0.003 Score=65.30 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCcchh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFE 428 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~e---ag~pfi~is~se~~ 428 (794)
+.-|+|+|+||+|||++|+.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 346899999999999999999997 78888877765554
No 150
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.96 E-value=0.0024 Score=71.42 Aligned_cols=39 Identities=26% Similarity=0.142 Sum_probs=29.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 425 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~s 425 (794)
|.....-++|.|+||+|||+||..+|... |.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34444558999999999999999987643 5688887764
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.94 E-value=0.00053 Score=66.51 Aligned_cols=38 Identities=34% Similarity=0.525 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
.+.-+.|.||||+||||+++.+++..+.+.+.+++.++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 34568999999999999999999988778888876554
No 152
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.93 E-value=0.00056 Score=65.27 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
+..+.|+||||+||||+++.+|+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3469999999999999999999999976653
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.92 E-value=0.00049 Score=66.44 Aligned_cols=31 Identities=45% Similarity=0.779 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
++.|+|+|+||+|||++++.++..++.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4579999999999999999999999988765
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.91 E-value=0.00052 Score=66.09 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.++|.||||+|||++|+++|..++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 155
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.89 E-value=0.00063 Score=66.96 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
..|.-|+|.|+||+||||+|+.++..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4456799999999999999999999999887654
No 156
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.87 E-value=0.00068 Score=64.69 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
..|+|.|+||||||++++.+|..+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999998753
No 157
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.87 E-value=0.0067 Score=68.31 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=50.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh----------------h----hhhhhHHHHHHHHHH
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----------------F----VGVGARRVRSLFQAA 446 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~----------------~----vG~~~~~vr~lF~~A 446 (794)
.|.-++++|++|+||||++..+|..+ |..+..+++..+... + .......+++.+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998755 666666665533110 0 011233456677778
Q ss_pred HhCCCeEEEEcCcccc
Q 003807 447 KKKAPCIIFIDEIDAV 462 (794)
Q Consensus 447 r~~aP~ILfIDEIDaL 462 (794)
+...+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777889999987544
No 158
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.87 E-value=0.0046 Score=63.22 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 425 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~s 425 (794)
.++++||+|+|||.+|.+++...+.+.+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999888777766544
No 159
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.85 E-value=0.0008 Score=64.75 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
..|+-|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3456799999999999999999999999776643
No 160
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.84 E-value=0.00056 Score=65.25 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH-hcCCCEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAG-EAGVPFF 420 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~-eag~pfi 420 (794)
|.-|+|.|+||+||||+|+.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 55789999999999999999998 4554433
No 161
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.84 E-value=0.00061 Score=66.54 Aligned_cols=31 Identities=48% Similarity=0.707 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh-cCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGE-AGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~e-ag~pfi~ 421 (794)
+..|+|+|+||||||++++.++.. .|.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 356999999999999999999999 6877764
No 162
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.83 E-value=0.0021 Score=82.60 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=79.1
Q ss_pred CCCCce--EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh----------------hhhhhhhhHHHHHHHHHH
Q 003807 388 GKLPKG--ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE----------------EMFVGVGARRVRSLFQAA 446 (794)
Q Consensus 388 ~~~Pkg--VLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~----------------e~~vG~~~~~vr~lF~~A 446 (794)
+-.|+| |++|||+|||||+||-.++.++ |-...+++...-. -.+...++..+.-+...+
T Consensus 1426 gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~ 1505 (1706)
T 3cmw_A 1426 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1505 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHH
Confidence 356666 9999999999999998876544 6777777654211 113344567777788888
Q ss_pred HhCCCeEEEEcCccccccccccc-------ccchHHHHHHHHHhhhccccCCcEEEEEEcC
Q 003807 447 KKKAPCIIFIDEIDAVGSTRKQW-------EGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (794)
Q Consensus 447 r~~aP~ILfIDEIDaL~~~r~~~-------~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN 500 (794)
+..+|++|+||.+.++.++..-. -+-..+.+.|.|..|.+.-...++.+|.+..
T Consensus 1506 ~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~ 1566 (1706)
T 3cmw_A 1506 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1566 (1706)
T ss_dssp HHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 99999999999999998865422 1112456677777777766666666666544
No 163
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00082 Score=64.78 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|.-|+|.|+||+||||+|+.++..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4569999999999999999999999987654
No 164
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.78 E-value=0.0059 Score=65.20 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
|.....-++|.|+||+|||+||..+|..+ +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 34444568999999999999999998654 4677777653
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.77 E-value=0.00063 Score=63.91 Aligned_cols=29 Identities=41% Similarity=0.639 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
-|+|.||||+||||+|+.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887754
No 166
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.76 E-value=0.00093 Score=65.80 Aligned_cols=31 Identities=39% Similarity=0.739 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
++-|+|.|+||+||||+|+.+++.+|.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5579999999999999999999999987765
No 167
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.73 E-value=0.0036 Score=68.49 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=57.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeC-cchh---------hhhhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG-SEFE---------EMFVGVGARRVRSLFQAAKKKAPCIIFIDE 458 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~-se~~---------e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDE 458 (794)
.++|.||+|+||||+.+++++.. +..++.+.- .++. ...++.....+.+.+..+-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48899999999999999998865 233333221 1110 001111122345577777778999999999
Q ss_pred cccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCC
Q 003807 459 IDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (794)
Q Consensus 459 IDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (794)
+-. ..+...++.... .+..||.++...+.
T Consensus 205 p~d------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 205 MRD------------LETIRLALTAAE-----TGHLVFGTLHTTSA 233 (356)
T ss_dssp CCS------------HHHHHHHHHHHH-----TTCEEEEEESCSSH
T ss_pred CCC------------HHHHHHHHHHHh-----cCCEEEEEEccChH
Confidence 841 234444444322 24457778876543
No 168
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.73 E-value=0.00082 Score=65.18 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
+.-|+|.|+||+||||+++.++..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45699999999999999999999999876653
No 169
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.73 E-value=0.0095 Score=67.07 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCcccccccccccccc--hHHHHHHHHHhhhccc--------cCCcEEEEEEc----CCC
Q 003807 437 RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFE--------QNEGIILMAAT----NLP 502 (794)
Q Consensus 437 ~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~--~~~~LnqLL~eLDg~~--------~~~~VIVIaAT----N~p 502 (794)
...++....|..+ .|+|+||||.++...+...+. ....+..||..||+-. ...+|++|+|. +.|
T Consensus 239 ~~~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 239 ELKQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 3344555555333 499999999998754322221 2346678898888732 34578899887 244
Q ss_pred CCCChhhcCCCccceEEEccCCCHHHHHHHHH
Q 003807 503 DILDPALTRPGRFDRHIVVPNPDVRGRQEILE 534 (794)
Q Consensus 503 ~~LD~ALlRpGRFdr~I~V~lPd~~eR~eILk 534 (794)
.++-|.|+. ||+.+|.++.++.++..+|+.
T Consensus 317 ~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 317 SDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 445578876 999999999999999999994
No 170
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.71 E-value=0.0011 Score=64.02 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=31.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
..+.-+.|+|++|+||||+++.++..+ |.+++.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 344568899999999999999999987 99998877543
No 171
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.71 E-value=0.001 Score=63.28 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
+.|+|.|+||+|||++|+.++..+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988765
No 172
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.70 E-value=0.00097 Score=69.01 Aligned_cols=32 Identities=34% Similarity=0.332 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
-++|.||||+|||++|+++|.+.+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48899999999999999999999998876654
No 173
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.69 E-value=0.012 Score=63.07 Aligned_cols=73 Identities=23% Similarity=0.258 Sum_probs=45.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh-------h---h----------hhhhHHHHHHHH
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------F---V----------GVGARRVRSLFQ 444 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~-------~---v----------G~~~~~vr~lF~ 444 (794)
...|+-++|+||+|+||||++..+|..+ +..+..+++..+... + . +.......+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3456779999999999999999999865 555555554433211 1 0 011112233444
Q ss_pred HHHhCCCeEEEEcCcc
Q 003807 445 AAKKKAPCIIFIDEID 460 (794)
Q Consensus 445 ~Ar~~aP~ILfIDEID 460 (794)
.+....|.+|+||+..
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5556678899998764
No 174
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.68 E-value=0.00081 Score=64.60 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
|.-|+|.|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999887
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.66 E-value=0.001 Score=64.19 Aligned_cols=30 Identities=30% Similarity=0.528 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
..++|.|+||+||||+++.++..+|.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 458999999999999999999999876653
No 176
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.65 E-value=0.0013 Score=65.81 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
+..|+|.|+||+||||+++.+|..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45799999999999999999999999876653
No 177
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.64 E-value=0.0074 Score=69.14 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=50.8
Q ss_pred Ce-EEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC--CCChhhcCCCccceEEEccCCCHH
Q 003807 451 PC-IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--ILDPALTRPGRFDRHIVVPNPDVR 527 (794)
Q Consensus 451 P~-ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~--~LD~ALlRpGRFdr~I~V~lPd~~ 527 (794)
|. +|+|||+..+.... ...+..++..+-......++.+|.+|.+|. .++..++. -|..+|.+...+..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKI 367 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHH
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHH
Confidence 54 89999998775311 112233333332223345888899999987 57877765 67888899999998
Q ss_pred HHHHHHH
Q 003807 528 GRQEILE 534 (794)
Q Consensus 528 eR~eILk 534 (794)
+...|+.
T Consensus 368 dsr~ilg 374 (512)
T 2ius_A 368 DSRTILD 374 (512)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8888874
No 178
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.64 E-value=0.00095 Score=64.90 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
+.-|+|.|+||+||||+|+.++..++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4569999999999999999999999976654
No 179
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.64 E-value=0.0083 Score=69.52 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=51.5
Q ss_pred eEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCC--CCChhhcCCCccceEEEccCCCHHHH
Q 003807 452 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--ILDPALTRPGRFDRHIVVPNPDVRGR 529 (794)
Q Consensus 452 ~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~--~LD~ALlRpGRFdr~I~V~lPd~~eR 529 (794)
.+|+|||++.+..... ......+.++.. .....+|.+|.+|.+|. .|+..++. -|...|.+...+..+.
T Consensus 345 ivvVIDE~~~L~~~~~---~~~~~~L~~Iar----~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Ds 415 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---KKVEELIARIAQ----KARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDS 415 (574)
T ss_dssp EEEEESCCTTHHHHTC---HHHHHHHHHHHH----HCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHH
T ss_pred EEEEEeCHHHHhhhhh---HHHHHHHHHHHH----HHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHH
Confidence 5899999998854211 111223333332 23467899999999997 78887775 6778889999988888
Q ss_pred HHHHH
Q 003807 530 QEILE 534 (794)
Q Consensus 530 ~eILk 534 (794)
..||.
T Consensus 416 r~ILd 420 (574)
T 2iut_A 416 RTILD 420 (574)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 77773
No 180
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.60 E-value=0.0011 Score=65.94 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.|+|.||||+||||+|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999887754
No 181
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.59 E-value=0.001 Score=66.91 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.+.-|+|.|+||+||||+++.+|..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345799999999999999999999999877653
No 182
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.0046 Score=61.50 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+||||+++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999875
No 183
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.57 E-value=0.0011 Score=65.62 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.|+|.||||+||||+|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887754
No 184
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.56 E-value=0.0013 Score=63.38 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.-|+|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 185
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.55 E-value=0.0013 Score=64.58 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
++-|+|.|+||+||||+++.++..+|.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 45689999999999999999999999876654
No 186
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.52 E-value=0.0014 Score=65.72 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
..|+|.|+||+||||+|+.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
No 187
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.51 E-value=0.0018 Score=61.43 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.|+|+|+||+|||++|+.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999988775
No 188
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.50 E-value=0.0019 Score=65.43 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
+..|+|.|+||+||||+|+.||.+++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35799999999999999999999999876653
No 189
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.50 E-value=0.0014 Score=67.27 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.|.-|+|.||||+||||+|+.++.+.+.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 466799999999999999999999998776643
No 190
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.45 E-value=0.0022 Score=61.49 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
..++|.||||+||||+++.+++..|.+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 468999999999999999999998866553
No 191
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.45 E-value=0.0019 Score=63.70 Aligned_cols=36 Identities=31% Similarity=0.631 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
.+.-+.|.||+|+||||+++.+++..|..++ ++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i--~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA--EADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE--EGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE--ccccc
Confidence 3456899999999999999999999976544 44443
No 192
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.43 E-value=0.0016 Score=65.22 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.|..|+|.||||+||||+++.+|..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34579999999999999999999999976543
No 193
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.37 E-value=0.011 Score=66.43 Aligned_cols=73 Identities=26% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhh----------hhhh----------hhHHHHHHHHHH
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----------FVGV----------GARRVRSLFQAA 446 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~----------~vG~----------~~~~vr~lF~~A 446 (794)
.|.-+++.||+|+||||++..+|..+ |..+..+++..+... ..|. .....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778999999999999999998755 566665554432110 0010 112234445555
Q ss_pred HhCCCeEEEEcCcccc
Q 003807 447 KKKAPCIIFIDEIDAV 462 (794)
Q Consensus 447 r~~aP~ILfIDEIDaL 462 (794)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567889999987554
No 194
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.35 E-value=0.0023 Score=65.35 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=30.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
+.|+-|+|.||||+||+|.|+.|+...|++.+ +..++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdl 63 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDL 63 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHH
Confidence 44667899999999999999999999987654 44444
No 195
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.30 E-value=0.0031 Score=60.75 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 423 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g~pfi~is 423 (794)
-|.|.|+||+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89888764
No 196
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.29 E-value=0.013 Score=66.44 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 425 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~s 425 (794)
|.....-++|.|+||+|||+||..+|..+ |.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34444568999999999999999998754 5678887764
No 197
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.28 E-value=0.0026 Score=68.80 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 425 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~s 425 (794)
.++.++|+||+|+|||++|+.+|.+.+.+++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 345799999999999999999999999888877643
No 198
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.28 E-value=0.0082 Score=58.01 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=17.0
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKA 410 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArA 410 (794)
.-+.|.||+|+|||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4588999999999999994
No 199
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.27 E-value=0.028 Score=59.74 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSE 426 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se 426 (794)
.+.-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45679999999999999999998754 55666666544
No 200
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.26 E-value=0.0029 Score=62.92 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.-+.|.||+|+||||+++.+++..|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999987764
No 201
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.25 E-value=0.012 Score=65.93 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
|.....-++|.|+||+|||+||-.+|..+ |.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 33444458999999999999999987754 6788887654
No 202
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.21 E-value=0.003 Score=62.88 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.|+|.|+||+||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 388999999999999999999999887654
No 203
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.19 E-value=0.0056 Score=63.90 Aligned_cols=67 Identities=24% Similarity=0.373 Sum_probs=41.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC----CCEEEEeCcchh-----------hhhhhhhhHHHHHHHHHHHhCCCeEEEEc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGSEFE-----------EMFVGVGARRVRSLFQAAKKKAPCIIFID 457 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag----~pfi~is~se~~-----------e~~vG~~~~~vr~lF~~Ar~~aP~ILfID 457 (794)
-++|.||+|+||||+++++++... ..++. .+..+. ...+|.....++..+..+-...|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~-~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-IEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE-EESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE-cCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 588999999999999999998642 22222 111110 00111112234566666666789999999
Q ss_pred Ccc
Q 003807 458 EID 460 (794)
Q Consensus 458 EID 460 (794)
|.-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 974
No 204
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.18 E-value=0.0037 Score=61.64 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
.+.-+.|.||+|+||||+++++++.+ |...+++++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 44568899999999999999999988 55444555443
No 205
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.18 E-value=0.014 Score=68.11 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
+.++++||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 36999999999999988877654
No 206
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.17 E-value=0.0037 Score=61.06 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
-|.|.|++|+|||++++.+|..+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999888753
No 207
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.17 E-value=0.003 Score=61.41 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
-|.|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987664
No 208
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.16 E-value=0.0023 Score=62.84 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
-|.|+|++|+||||+++.+++ .|++++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 88777654
No 209
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.16 E-value=0.0019 Score=62.09 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCcc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSE 426 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag---~pfi~is~se 426 (794)
-|+|.|+||+||||+++.++..++ .++..++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 489999999999999999999775 3455555433
No 210
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.15 E-value=0.014 Score=58.85 Aligned_cols=115 Identities=15% Similarity=0.118 Sum_probs=63.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe---Cc------chhhhhh-----------------hhhhHHHHHHH
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA---GS------EFEEMFV-----------------GVGARRVRSLF 443 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea---g~pfi~is---~s------e~~e~~v-----------------G~~~~~vr~lF 443 (794)
.|++|+++|+|||++|-++|-++ |..+..+. +. .+...+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58899999999999999997765 67766662 21 1222220 00123445556
Q ss_pred HHHHh----CCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCCChhhcCCCccceEE
Q 003807 444 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 519 (794)
Q Consensus 444 ~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~LD~ALlRpGRFdr~I 519 (794)
..++. ....+|+|||+-....-. -- ....++..+.. .....-||.|+|.+ ++.|+- .-|.+-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g----~l---~~~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e--~AD~VT 175 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYD----YL---PLEEVISALNA--RPGHQTVIITGRGC---HRDILD--LADTVS 175 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTT----SS---CHHHHHHHHHT--SCTTCEEEEECSSC---CHHHHH--HCSEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCC----CC---CHHHHHHHHHh--CcCCCEEEEECCCC---cHHHHH--hCccee
Confidence 66554 447899999996532210 00 11234444442 23344556677744 445543 445544
Q ss_pred Ec
Q 003807 520 VV 521 (794)
Q Consensus 520 ~V 521 (794)
++
T Consensus 176 em 177 (196)
T 1g5t_A 176 EL 177 (196)
T ss_dssp EC
T ss_pred ee
Confidence 44
No 211
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.14 E-value=0.0039 Score=60.87 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEe
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRA 423 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea-g~pfi~is 423 (794)
+.-|.|.|+||+||||+++.++..+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57887664
No 212
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.13 E-value=0.0033 Score=63.46 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
++|.||||+||+|.|+.||...|++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7889999999999999999999987654
No 213
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.13 E-value=0.0064 Score=66.69 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=43.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEEeCc-ch--hh--hhh-----hhhhHHHHHHHHHHHhCCCeEEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGS-EF--EE--MFV-----GVGARRVRSLFQAAKKKAPCIIF 455 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag----~pfi~is~s-e~--~e--~~v-----G~~~~~vr~lF~~Ar~~aP~ILf 455 (794)
....++|+||+|+||||+++++++... ..++.+... ++ .. .++ |.....++..+..+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 344689999999999999999998652 233332211 10 00 001 11222345566666667899999
Q ss_pred EcCcc
Q 003807 456 IDEID 460 (794)
Q Consensus 456 IDEID 460 (794)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99984
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.09 E-value=0.0039 Score=63.51 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|.-+.|.||||+||||+++.|+..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5679999999999999999999999876543
No 215
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.06 E-value=0.0047 Score=59.84 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 423 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea---g~pfi~is 423 (794)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99887654
No 216
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.05 E-value=0.0047 Score=67.19 Aligned_cols=39 Identities=18% Similarity=0.076 Sum_probs=29.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
|..+..-++|.|+||+|||+||..+|..+ +.++.+++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 33444458999999999999999998764 6777777653
No 217
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.03 E-value=0.0044 Score=60.30 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|.-|.|+|++|+|||++++.++.. |.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 456899999999999999999998 877764
No 218
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.03 E-value=0.0039 Score=62.82 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
-|+|.|+||+||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999876654
No 219
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.02 E-value=0.0021 Score=70.50 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.++|+||||+|||++++++|+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 69999999999999999999999988854
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.01 E-value=0.0095 Score=59.21 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcch
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEF 427 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~ 427 (794)
.+.-++|.|+||+||||+++.+++.+ |.+++.+++..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34568899999999999999999865 467888876544
No 221
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.98 E-value=0.0042 Score=61.16 Aligned_cols=29 Identities=38% Similarity=0.511 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.-+.|.||+|+||||+++.+++ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3588999999999999999988 8888764
No 222
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.97 E-value=0.0062 Score=60.72 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcchhh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~~e 429 (794)
-|.|+|++||||||+++.++..+|++++. +..+..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~ 48 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGH 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHH
Confidence 48899999999999999999988988765 444433
No 223
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.95 E-value=0.0059 Score=62.58 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCE--------EEEeCcchh
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPF--------FYRAGSEFE 428 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pf--------i~is~se~~ 428 (794)
.|.-|.|.|++|+|||++|+.++..++.++ ..++..++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 455699999999999999999999998773 356666654
No 224
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.92 E-value=0.015 Score=56.71 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
+.+++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999988877664
No 225
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.82 E-value=0.006 Score=60.80 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
+.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 459999999999999999998765
No 226
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.81 E-value=0.039 Score=62.88 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=60.6
Q ss_pred CceEEEEcCCCCcHHHHHHH--HHHhc--CCCEEEEeCcchhhh------hhhh--------------------------
Q 003807 391 PKGILLTGAPGTGKTLLAKA--IAGEA--GVPFFYRAGSEFEEM------FVGV-------------------------- 434 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArA--IA~ea--g~pfi~is~se~~e~------~vG~-------------------------- 434 (794)
...++|.||+|+|||+|++. +++-. +..-+++++.+.... ..|.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l 118 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVV 118 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhh
Confidence 34689999999999999999 44533 445566665432100 0000
Q ss_pred ----hhHHHHHHHHHHHhCCCeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCCCCCC
Q 003807 435 ----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (794)
Q Consensus 435 ----~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~p~~L 505 (794)
................|.+|+|||.-.+.+..+ .+......+..++..+. . .++.||.+|+..+.+
T Consensus 119 ~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~-lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 119 GGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYD-ASSVVRRELFRLVARLK---Q-IGATTVMTTERIEEY 188 (525)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTC-CHHHHHHHHHHHHHHHH---H-HTCEEEEEEECSSSS
T ss_pred cccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcC-CHHHHHHHHHHHHHHHH---H-CCCEEEEEecCCCCc
Confidence 011222333344456788999999977644210 01122344455555543 2 245566677766654
No 227
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.80 E-value=0.042 Score=62.65 Aligned_cols=72 Identities=29% Similarity=0.270 Sum_probs=47.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchhhhh------hh----------------------hhhHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF------VG----------------------VGARRVR 440 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~e~~------vG----------------------~~~~~vr 440 (794)
.-++|.||||+|||+|++.+++.. |.+.+++...+-...+ .| .+....+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQ 361 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHH
Confidence 458899999999999999998754 4456665543311000 00 1234556
Q ss_pred HHHHHHHhCCCeEEEEcCccccc
Q 003807 441 SLFQAAKKKAPCIIFIDEIDAVG 463 (794)
Q Consensus 441 ~lF~~Ar~~aP~ILfIDEIDaL~ 463 (794)
.++..+....|.+|+||=+..+.
T Consensus 362 ~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 362 IIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHhhCCCEEEEcChHHHH
Confidence 66677777889999999655553
No 228
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.78 E-value=0.0055 Score=59.83 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC--EEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVP--FFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~p--fi~ 421 (794)
+.-|+|.|+||+||||+++.++..++.. ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 3468999999999999999999988763 544
No 229
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.78 E-value=0.0027 Score=62.44 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVP 418 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~p 418 (794)
+.-|.|.|+||+||||+++.++..++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999987544
No 230
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.76 E-value=0.0066 Score=62.68 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|..+.|.||||+|||++++.+|..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4569999999999999999999999977654
No 231
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.72 E-value=0.033 Score=54.20 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=14.9
Q ss_pred ceEEEEcCCCCcHHHHH
Q 003807 392 KGILLTGAPGTGKTLLA 408 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LA 408 (794)
+.+++.+|+|+|||..+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 46999999999999863
No 232
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.68 E-value=0.0033 Score=61.79 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
|.-|+|.|+||+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999999764
No 233
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.65 E-value=0.0041 Score=67.14 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=47.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCcc-hh-----hh--hhhhhhHHHHHHHHHHHhCCCeEEEEcCccc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE-FE-----EM--FVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~se-~~-----e~--~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 461 (794)
..++|.||+|+|||||++++++... .-.+.+.+.. +. .. ++..+..+.+..+..|-...|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 3699999999999999999999763 2244444321 10 00 1100334566777778788899999999754
No 234
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.65 E-value=0.0061 Score=63.57 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-CCCEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA-GVPFF 420 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea-g~pfi 420 (794)
|.-|+|.|+||+||||+|+.++.+. +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4568999999999999999999974 54444
No 235
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.63 E-value=0.03 Score=58.60 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||++++++-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 347899999999999999999844
No 236
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.60 E-value=0.0069 Score=62.99 Aligned_cols=30 Identities=37% Similarity=0.629 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
..|.|.|++|+||||+++.+|+.+|.+|+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 369999999999999999999999988775
No 237
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.57 E-value=0.0083 Score=59.29 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.++-++|.||||+||||+++.++...+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 445689999999999999999999874
No 238
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.57 E-value=0.0081 Score=59.58 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
..+.|+|++|+|||++++.++..+|.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 468999999999999999999999988765
No 239
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.57 E-value=0.01 Score=57.55 Aligned_cols=36 Identities=33% Similarity=0.392 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
.+.-++|.|+||+|||++++.++..+ +.++..+++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 34568899999999999999999876 4455555543
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.55 E-value=0.011 Score=58.70 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
+.-+.|.||+|+|||||++.|++...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44678999999999999999999874
No 241
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.54 E-value=0.015 Score=64.30 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||||.|+||+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999844
No 242
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.52 E-value=0.0091 Score=59.36 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|.-|.|.|++|+||||+++.++. +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 45689999999999999999998 8877664
No 243
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.52 E-value=0.056 Score=54.56 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIA 412 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA 412 (794)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998666554
No 244
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.49 E-value=0.024 Score=59.72 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||.|+|||||++++++-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999999854
No 245
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.45 E-value=0.0068 Score=65.98 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 425 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~s 425 (794)
++-|+|.||+|+|||+|+..||.+++.+++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999999888765543
No 246
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.44 E-value=0.0066 Score=59.88 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-CCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA-GVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea-g~pfi~ 421 (794)
.-+.|.|+||+||||+++.+++.. +++++.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 457899999999999999999987 555554
No 247
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.43 E-value=0.011 Score=59.95 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.+..+.|.|++|+|||++++.+++.+|++++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34568899999999999999999999987764
No 248
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.42 E-value=0.13 Score=50.73 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCCcHHHHHHHHHHh
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~---~~PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
.+|+|+.-.++..+.|.+. -+..+..++.... .-.+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688876666666555441 1333333332110 01246999999999999866555443
No 249
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.41 E-value=0.028 Score=56.66 Aligned_cols=69 Identities=20% Similarity=0.115 Sum_probs=42.2
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHH--hcCCCEEEEeCc---chhhhh---hhh-----hhHHHHHHHHHHHhCCCeEEEEc
Q 003807 392 KGILLTGAPGTGKT-LLAKAIAG--EAGVPFFYRAGS---EFEEMF---VGV-----GARRVRSLFQAAKKKAPCIIFID 457 (794)
Q Consensus 392 kgVLL~GPPGTGKT-~LArAIA~--eag~pfi~is~s---e~~e~~---vG~-----~~~~vr~lF~~Ar~~aP~ILfID 457 (794)
+-.++|||.|+||| .|.+++.+ +.+..++++... .+.... .|. ......++++..+. ..+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~--~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG--VAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHT--CSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccC--CCEEEEE
Confidence 45789999999999 89999866 446777777633 111111 010 01112234443332 4699999
Q ss_pred Ccccc
Q 003807 458 EIDAV 462 (794)
Q Consensus 458 EIDaL 462 (794)
|+.=+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99888
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.39 E-value=0.0097 Score=59.25 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
+.-+.|.||+|+|||++++.+++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44688999999999999999999864
No 251
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.39 E-value=0.0098 Score=64.13 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
..|+-++|.||+|+|||+||..+|...+.+++..+.-.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 34567899999999999999999999988777665433
No 252
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.33 E-value=0.014 Score=64.76 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=29.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
..|.-|+|+|+||+||||+|+.++...+..++ +...+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchH
Confidence 44667999999999999999999999886554 44444
No 253
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.26 E-value=0.032 Score=61.11 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||||.|+||+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999844
No 254
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.26 E-value=0.074 Score=55.73 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=32.6
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCC----CCCceEEEEcCCCCcHHHHHHHHHHh
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG----KLPKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~----~~PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
.+|+++.-.+...+.|.+. .+..+..++.... .-.+.+++.+|+|+|||+.+-..+-+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 3577775555555555432 1223322222110 11257999999999999876554443
No 255
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.25 E-value=0.013 Score=60.28 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.-|.|.||+|+||||+++.+|..+|.+++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 358899999999999999999999987663
No 256
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.22 E-value=0.0093 Score=62.60 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
|.-|.|+|+||+||||+|+.++ +.|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 4569999999999999999999 67877654
No 257
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.13 E-value=0.09 Score=56.73 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999865
No 258
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.13 E-value=0.03 Score=65.66 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=32.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcch
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~ 427 (794)
.+.-|+|+|.||+||||+|++++..+ |.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45679999999999999999999998 999998875444
No 259
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.13 E-value=0.062 Score=60.19 Aligned_cols=36 Identities=33% Similarity=0.331 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
.|+.++++|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45689999999999999999998865 4566666654
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.12 E-value=0.013 Score=57.13 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
+.-+.|.||+|+||||+++.+++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4468899999999999999999876
No 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.12 E-value=0.047 Score=67.49 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 003807 361 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 361 vG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
+|.++.+++|.+.+.... ..+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899988888877665211 1346899999999999999999864
No 262
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.11 E-value=0.014 Score=56.70 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
+-+.|.||+|+|||||++.+++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998753
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.10 E-value=0.037 Score=54.60 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
+.-+.|.||+|+||||+++.+++.+ +.+++..+...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 4568899999999999999999865 66666654443
No 264
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.08 E-value=0.039 Score=63.20 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCcchh
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFE 428 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag---~pfi~is~se~~ 428 (794)
.|.-|+|+|.||+|||++|+.+|..++ .+...++..++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 345689999999999999999999884 445555555443
No 265
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.06 E-value=0.061 Score=58.81 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||||.++||+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999854
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.05 E-value=0.015 Score=56.34 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcch
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~se~ 427 (794)
-+.|.||+|+||||+++.+++..+. .+.+++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 234444433
No 267
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.98 E-value=0.14 Score=50.47 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=31.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHH
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLL 407 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG---~~~PkgVLL~GPPGTGKT~L 407 (794)
..+|+++.-.+...+.|.+. -+..+..++... ..-.+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 45798886666666666442 133333333211 01125799999999999976
No 268
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.97 E-value=0.017 Score=58.12 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
++-+.|.||+|+|||+|++++++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998754
No 269
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.96 E-value=0.066 Score=58.61 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||||.+.||+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999844
No 270
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.92 E-value=0.069 Score=58.69 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+-|.||+|+|||||.|+|++-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999999843
No 271
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.91 E-value=0.015 Score=63.29 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is 423 (794)
+-|+|.||+|+|||++|+.||..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999986665544
No 272
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.89 E-value=0.12 Score=54.69 Aligned_cols=35 Identities=29% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 424 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~ 424 (794)
.++.+.++|++|+|||++++.+|... +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 45678889999999999999998854 555555554
No 273
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.88 E-value=0.038 Score=60.81 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||||.|+||+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999843
No 274
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.88 E-value=0.031 Score=55.77 Aligned_cols=71 Identities=14% Similarity=0.028 Sum_probs=40.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcch-------hhhhhhhh-----hHHHHHHHHHHHhCCCeEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF-------EEMFVGVG-----ARRVRSLFQAAKKKAPCIIFI 456 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~-------~e~~vG~~-----~~~vr~lF~~Ar~~aP~ILfI 456 (794)
+-.+++||.|+|||+.+-.++.++ |..++.+..... .....|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 357889999999999888887765 555554431100 00011110 0111245554432 3579999
Q ss_pred cCccccc
Q 003807 457 DEIDAVG 463 (794)
Q Consensus 457 DEIDaL~ 463 (794)
||++-+.
T Consensus 88 DEaqfl~ 94 (191)
T 1xx6_A 88 DEVQFFD 94 (191)
T ss_dssp CSGGGSC
T ss_pred ECCCCCC
Confidence 9998873
No 275
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.88 E-value=0.095 Score=52.37 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHH
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG---~~~PkgVLL~GPPGTGKT~LA 408 (794)
..+|+++.-.+...+.|.+. .+..+..++... ..-.+.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 45688886666666555431 123333332211 011257999999999999853
No 276
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.85 E-value=0.059 Score=57.89 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
...++-++++||+|+||||++..+|..+ +..+..+++.-
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456779999999999999999998865 56666666643
No 277
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.82 E-value=0.018 Score=57.55 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
-|.|.||+|||||++++.+|..+|.+|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 5889999999999999999999999988
No 278
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.82 E-value=0.067 Score=58.64 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||||.|+||+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999854
No 279
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.81 E-value=0.069 Score=59.58 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---CEEEEeCc-chh-
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAGS-EFE- 428 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAIA~eag~---pfi~is~s-e~~- 428 (794)
..+++++.-....+..|.+++ ..+ ..-++|.||+|+||||+.+++++...- .++.+.-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~~~----------ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---KRP----------HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---TSS----------SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---Hhc----------CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 346777754444444454441 111 124789999999999999999997742 33333211 110
Q ss_pred h----hhhh-hhhHHHHHHHHHHHhCCCeEEEEcCcc
Q 003807 429 E----MFVG-VGARRVRSLFQAAKKKAPCIIFIDEID 460 (794)
Q Consensus 429 e----~~vG-~~~~~vr~lF~~Ar~~aP~ILfIDEID 460 (794)
. ..+. ...-.....+..+-...|.++++.|+.
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000 001122334445555679999999864
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.76 E-value=0.016 Score=57.05 Aligned_cols=31 Identities=39% Similarity=0.523 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC--CCEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG--VPFFY 421 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag--~pfi~ 421 (794)
+.-+.|.||+|+|||||++.+++..+ +.++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34588999999999999999999877 54443
No 281
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.72 E-value=0.11 Score=59.42 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...+.-++|.||+|+||||+++.|++.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3445668899999999999999999865
No 282
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.71 E-value=0.053 Score=53.96 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCCCcccccCCH-HHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCCcHHHHHH
Q 003807 353 NVKTFKDVKGCD-DAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAK 409 (794)
Q Consensus 353 ~~~tFdDVvG~d-eaK~eL~eiV~~Lk~p~~~~~lG~---~~PkgVLL~GPPGTGKT~LAr 409 (794)
+..+|+|..+.. +..+.|.+. -+..+..++.... .-.+.+++.+|+|+|||..+-
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 445788855543 444444321 1334433332110 112579999999999997543
No 283
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.67 E-value=0.29 Score=54.77 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=47.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCcchhhhh----------hh----------hhhHHHHHHHH
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMF----------VG----------VGARRVRSLFQ 444 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~se~~e~~----------vG----------~~~~~vr~lF~ 444 (794)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+.... .+ .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999998888644 6777777765432110 00 01222356666
Q ss_pred HHHhCCCeEEEEcCccc
Q 003807 445 AAKKKAPCIIFIDEIDA 461 (794)
Q Consensus 445 ~Ar~~aP~ILfIDEIDa 461 (794)
.++.....+++||=...
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 66655567999887443
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.66 E-value=0.02 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||+|+||||+++.+++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 357899999999999999999985
No 285
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.62 E-value=0.072 Score=53.77 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=29.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCCcHHHHH
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~---~~PkgVLL~GPPGTGKT~LA 408 (794)
+..+|+++.-.++..+.+.+. .+..+..++.... .-.+.+++.+|+|+|||+.+
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 345677765555554444331 1233332222110 01247999999999999864
No 286
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.60 E-value=0.019 Score=61.95 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
+-++|.||+|+|||+||..+|...+..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 458899999999999999999998876665443
No 287
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.57 E-value=0.041 Score=60.44 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||||.|+||+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999854
No 288
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.48 E-value=0.021 Score=55.59 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
+-+.|.||+|+||||+++.+++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998763
No 289
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.44 E-value=0.018 Score=58.43 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag~pfi~i 422 (794)
.++++|.||+|+|||+||..++...+ +++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 36899999999999999999998866 55543
No 290
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.43 E-value=0.024 Score=64.80 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=44.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCcc-hhhh---h--------hhhhhHHHHHHHHHHHhCCCeEEEEc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE-FEEM---F--------VGVGARRVRSLFQAAKKKAPCIIFID 457 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~se-~~e~---~--------vG~~~~~vr~lF~~Ar~~aP~ILfID 457 (794)
.+++|.||+|+||||+++++++... ...+.+.... +.-. . .+.....+.++...+-...|.+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999998773 2345554332 1100 0 01111234555666666789999999
Q ss_pred Ccc
Q 003807 458 EID 460 (794)
Q Consensus 458 EID 460 (794)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 963
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.43 E-value=0.12 Score=54.76 Aligned_cols=36 Identities=33% Similarity=0.306 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se 426 (794)
+.-+++.|++|+|||+++..+|..+ +..+..+++.-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 6678899999999999999998765 66677666643
No 292
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.31 E-value=0.22 Score=56.93 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 424 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~ 424 (794)
..|+.|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999999999999999998654 566666665
No 293
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.28 E-value=0.082 Score=63.33 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..+++.||+|+|||+++..+..+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999977777554
No 294
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.11 E-value=0.023 Score=60.25 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
..|.-|.|.||+|+||||+++.|++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456788999999999999999998775
No 295
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.06 E-value=0.24 Score=57.85 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHH-HHHHhc--CCCEEEEeCc
Q 003807 393 GILLTGAPGTGKTLLAK-AIAGEA--GVPFFYRAGS 425 (794)
Q Consensus 393 gVLL~GPPGTGKT~LAr-AIA~ea--g~pfi~is~s 425 (794)
-.||.||||||||+++- .|+... +..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 37899999999997544 443322 5566655543
No 296
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.98 E-value=0.11 Score=63.60 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ 413 (794)
..-++|+||.|+||||+.|.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34689999999999999999975
No 297
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.94 E-value=0.22 Score=48.30 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAK 409 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LAr 409 (794)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997544
No 298
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.91 E-value=0.37 Score=50.88 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.1
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 003807 391 PKGILLTGAPGTGKTLLAKAI 411 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAI 411 (794)
++.+++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 368999999999999865433
No 299
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.91 E-value=0.035 Score=55.16 Aligned_cols=32 Identities=38% Similarity=0.583 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCcc
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~is~se 426 (794)
+|++|++|+|||++|..++.. +.|.+|+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887754
No 300
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.91 E-value=0.03 Score=62.35 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
+-++|.||+|+|||+||..+|...+..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 457899999999999999999999877655443
No 301
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.89 E-value=0.03 Score=55.35 Aligned_cols=26 Identities=35% Similarity=0.666 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
++.+.|.||+|+|||||++.+++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34689999999999999999998653
No 302
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.81 E-value=0.59 Score=49.51 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=31.3
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHHHHHHH
Q 003807 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 356 tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG---~~~PkgVLL~GPPGTGKT~LArAIA~ 413 (794)
+|+++.=..+..+.|.+. -+..+..++... ....+.+++.+|+|+|||+.+-..+-
T Consensus 9 ~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 577765555555555431 133333333211 01125799999999999987644443
No 303
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.77 E-value=0.071 Score=54.43 Aligned_cols=30 Identities=10% Similarity=-0.077 Sum_probs=22.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 423 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~ea---g~pfi~is 423 (794)
.+++||.|+|||+.+-.++..+ |..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999888776654 66665554
No 304
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.77 E-value=0.15 Score=51.37 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHH
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG---~~~PkgVLL~GPPGTGKT~LA 408 (794)
+..+|+++.=.++..+.|.+. -+..+..++... ....+.+++.+|+|+|||..+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 345799986555555555331 133343333211 011257999999999999764
No 305
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.68 E-value=0.074 Score=56.64 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...+.-+.|.||+|+||||+++.+|+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445678899999999999999999865
No 306
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.58 E-value=0.16 Score=62.22 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ 413 (794)
.-++|+||.|+||||+.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999954
No 307
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.57 E-value=0.11 Score=60.34 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEEeCcchh
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGSEFE 428 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag----~pfi~is~se~~ 428 (794)
.+.-|+|+|+||+||||+|++++..++ .+++.+++..+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 345689999999999999999999875 788888765543
No 308
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.54 E-value=0.28 Score=52.73 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=32.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCCcHHHHHHHH
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAI 411 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~---~~PkgVLL~GPPGTGKT~LArAI 411 (794)
..+|+++.=.++..+.|... -+..+..++.... .-.+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 34798876566666555431 1333333332110 01256999999999999765443
No 309
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.53 E-value=0.28 Score=52.91 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 423 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is 423 (794)
+.-|.|+|+||+|||+++.+++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3468999999999999999998765 44444443
No 310
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.50 E-value=0.043 Score=56.06 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999999864
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.49 E-value=0.047 Score=55.58 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVP 418 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~p 418 (794)
.-+-|.||+|+||||+++.+++.+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 347899999999999999999987754
No 312
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.48 E-value=0.049 Score=56.12 Aligned_cols=28 Identities=39% Similarity=0.647 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 394 VLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
+-|.||||+||||+|+.|+...+++++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 6689999999999999999999988764
No 313
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.47 E-value=0.13 Score=55.02 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...-+.|.||+|+|||||++.|++..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 33458999999999999999999854
No 314
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.46 E-value=0.043 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||+|+|||||++.+++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999976
No 315
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.42 E-value=0.021 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag 416 (794)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 316
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.38 E-value=0.26 Score=53.04 Aligned_cols=32 Identities=34% Similarity=0.338 Sum_probs=24.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 424 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~ 424 (794)
++++.+|+|+|||+.+-+++... +.+.+.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 69999999999999888776654 556666554
No 317
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.32 E-value=0.25 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
+..|+|.|.||+|||+|..++.+..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3469999999999999999997643
No 318
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.30 E-value=0.36 Score=51.57 Aligned_cols=57 Identities=23% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCC---CCceEEEEcCCCCcHHHHHHHHH
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGK---LPKGILLTGAPGTGKTLLAKAIA 412 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~---~PkgVLL~GPPGTGKT~LArAIA 412 (794)
..+|+|+.-.++..+.|.+. -+..+..++..... -.+.+++.+|+|+|||+.+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 35799887666665555431 12333333221100 11469999999999998654433
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.27 E-value=0.031 Score=56.13 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-Hhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIA-GEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA-~ea 415 (794)
.-+.|.||+|+||||+++.++ +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458899999999999999999 765
No 320
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.23 E-value=0.83 Score=51.04 Aligned_cols=36 Identities=28% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~s 425 (794)
.|..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 46678899999999999999999865 5556655553
No 321
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.19 E-value=0.054 Score=53.62 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.-+.|.||+|+|||||+++|++...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999874
No 322
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.16 E-value=0.098 Score=56.92 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=43.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCc-chh-----hh--hh-------hh-hhHHHHHHHHHHHhCCCeE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGS-EFE-----EM--FV-------GV-GARRVRSLFQAAKKKAPCI 453 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag--~pfi~is~s-e~~-----e~--~v-------G~-~~~~vr~lF~~Ar~~aP~I 453 (794)
..++|.||+|+|||||++++++... .-.+.+... ++. .. ++ +. ....+++.+..+....|..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999999763 223444321 110 00 11 10 1223566667777778899
Q ss_pred EEEcCcc
Q 003807 454 IFIDEID 460 (794)
Q Consensus 454 LfIDEID 460 (794)
+++||+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999864
No 323
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.10 E-value=0.04 Score=58.21 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCcchh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFE 428 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag---~pfi~is~se~~ 428 (794)
.-|.|.||+|+||||+|+.++..++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999998765 445556655543
No 324
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.05 E-value=0.1 Score=57.11 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...+.-+.|.||+|+||||+++.+|+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456678999999999999999999865
No 325
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.05 E-value=0.25 Score=48.83 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.9
Q ss_pred ceEEEEcCCCCcHHHHH
Q 003807 392 KGILLTGAPGTGKTLLA 408 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LA 408 (794)
+.+++.+|+|+|||..+
T Consensus 42 ~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp CCEEEECCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 47999999999999863
No 326
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.05 E-value=0.19 Score=56.38 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeC
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAG 424 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag---~pfi~is~ 424 (794)
.+.-|+|.|.||+|||++++.++..++ .+...++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 345799999999999999999999875 34444443
No 327
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.04 E-value=0.2 Score=57.68 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+-|.||.|+|||||+++|++..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999854
No 328
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.99 E-value=0.069 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||.|+|||||++++++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999999987
No 329
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.98 E-value=0.18 Score=54.42 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
+.|.-+.|.||+|+||||+++.+++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456788999999999999999998765
No 330
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.93 E-value=0.53 Score=50.32 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=30.1
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHHH
Q 003807 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAK 409 (794)
Q Consensus 355 ~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG---~~~PkgVLL~GPPGTGKT~LAr 409 (794)
.+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 4677776666665555431 133333222211 0012469999999999998643
No 331
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.83 E-value=0.14 Score=57.70 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
+-.++.|+||||||++...++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 45789999999999999887753
No 332
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.82 E-value=0.29 Score=58.95 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
.-++|+||.|+||||+.|.+++-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999874
No 333
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.81 E-value=0.066 Score=57.35 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.+....+.|+||+|+|||||++.|++...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 33445689999999999999999999873
No 334
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.79 E-value=0.071 Score=54.19 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYR 422 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag--~pfi~i 422 (794)
.-|.|.||||+||||+++.++..++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4588899999999999999999885 455543
No 335
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.69 E-value=0.27 Score=50.80 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~is~ 424 (794)
+.+++.+|+|+|||+.+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 369999999999999776666666666665543
No 336
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.68 E-value=0.31 Score=55.20 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48899999999999999987654
No 337
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.55 E-value=0.97 Score=47.49 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=32.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhh-----cCCCCCceEEEEcCCCCcHHHHH
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTR-----LGGKLPKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~-----lG~~~PkgVLL~GPPGTGKT~LA 408 (794)
...+|+++.-.+...+.|... -+..|..++. +-...++.+++++|+|||||+..
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456899886666665555431 1333333222 11123478999999999999753
No 338
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.53 E-value=0.12 Score=49.33 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...|++.|++|+|||+|..++.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998754
No 339
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.49 E-value=0.068 Score=56.66 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
+.-+.|.||+|+|||||++.+++..+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999765
No 340
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.45 E-value=0.084 Score=52.51 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
+|+||.|++|+|||++|.++... |..++
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 58999999999999999999874 54444
No 341
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.42 E-value=0.08 Score=53.66 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.-+.|.||+|+|||||.+++++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4578999999999999999999764
No 342
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.42 E-value=0.23 Score=54.90 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 425 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~is~s 425 (794)
.++|.+|+|+|||..+-.++...+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888888777776554
No 343
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.41 E-value=0.25 Score=57.22 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
+...-+.|.||+|+|||||++.+++..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 334568999999999999999999854
No 344
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.40 E-value=0.65 Score=49.48 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=32.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhc-----CCCCCceEEEEcCCCCcHHHHH
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRL-----GGKLPKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~l-----G~~~PkgVLL~GPPGTGKT~LA 408 (794)
...+|+++.-.+...+.|.+. -+..+..++.. -...++.+++.+|+|+|||+.+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345788876666666555431 13333322221 1112468999999999999865
No 345
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.18 E-value=0.091 Score=53.12 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
|+-|.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999983
No 346
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.12 E-value=0.42 Score=56.24 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=16.2
Q ss_pred CceEEEEcCCCCcHHHHH
Q 003807 391 PKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LA 408 (794)
.+.+++.||+|+|||+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 468999999999999877
No 347
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.09 E-value=0.35 Score=49.62 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAK 409 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LAr 409 (794)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998643
No 348
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.01 E-value=0.098 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...-+.|.||+|+|||++++.+...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34468999999999999999998864
No 349
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.97 E-value=0.67 Score=51.30 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=32.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhh-----cCCCCCceEEEEcCCCCcHHHHH
Q 003807 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTR-----LGGKLPKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 353 ~~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~-----lG~~~PkgVLL~GPPGTGKT~LA 408 (794)
...+|+++.-.++..+.|.+. -+..|..++. +-...++.+|+.||+|+|||..+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CcCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 345788887666665555431 1333322222 11113468999999999999763
No 350
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.97 E-value=0.32 Score=50.23 Aligned_cols=91 Identities=18% Similarity=0.053 Sum_probs=48.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCc-------chhhhhhhhh-----hHHHHHHHHHHHhCCCeEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGS-------EFEEMFVGVG-----ARRVRSLFQAAKKKAPCIIFI 456 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e---ag~pfi~is~s-------e~~e~~vG~~-----~~~vr~lF~~Ar~~aP~ILfI 456 (794)
+-.+++||.|+|||+.+-..+.. .|..++.+... .+.+. .|.. .....++++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 34678999999999766555443 35555544311 01000 0110 00112345444 33579999
Q ss_pred cCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEEcCC
Q 003807 457 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (794)
Q Consensus 457 DEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaATN~ 501 (794)
||+.-+. . +.+++..++. .++.||.+.-+
T Consensus 97 DEaQF~~-----------~-v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 97 DEGQFFP-----------D-IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SSGGGCT-----------T-HHHHHHHHHH----TTCEEEEECCS
T ss_pred Echhhhh-----------h-HHHHHHHHHh----CCCEEEEEecc
Confidence 9998772 1 5566666653 34556666543
No 351
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=91.95 E-value=0.5 Score=47.13 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCCcHHHHH
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~---~~PkgVLL~GPPGTGKT~LA 408 (794)
..+|+++.-.+...+.|.+. -+..+..++.... .-.+.+++.+|+|+|||..+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 35788886556665555431 1333333332110 11257999999999999763
No 352
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.93 E-value=0.3 Score=58.48 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
.-++|+||.|+||||+.|.+++-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46889999999999999999873
No 353
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.92 E-value=0.047 Score=56.13 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc-CCCEE
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA-GVPFF 420 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea-g~pfi 420 (794)
.+.-|.|.|++|+||||+++.++..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34568899999999999999999998 44333
No 354
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.85 E-value=0.36 Score=51.18 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=30.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCC---CCceEEEEcCCCCcHHHHH
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGK---LPKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG~~---~PkgVLL~GPPGTGKT~LA 408 (794)
..+|+++.=.+...+.|... -+..+..++....+ -.+.+++.+|+|+|||+.+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 45788886566665555442 13333333221100 0246999999999999864
No 355
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.85 E-value=0.35 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..-+.|.||+|+|||||++.+++..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3458899999999999999999855
No 356
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.79 E-value=0.63 Score=47.33 Aligned_cols=53 Identities=25% Similarity=0.210 Sum_probs=29.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHH
Q 003807 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLA 408 (794)
Q Consensus 354 ~~tFdDVvG~deaK~eL~eiV~~Lk~p~~~~~lG---~~~PkgVLL~GPPGTGKT~LA 408 (794)
..+|+++.-.+...+.|.+. -+..+..++... ..-.+.+++.+|+|+|||+.+
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHh
Confidence 45788875555555444321 122333332211 011257999999999999854
No 357
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.77 E-value=0.1 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
+.+.-+.|.||+|+|||||++.|++..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 334557899999999999999999966
No 358
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.62 E-value=0.71 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-|+|.|++|+|||+|...+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.48 E-value=0.12 Score=55.02 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.+.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999865
No 360
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.39 E-value=0.22 Score=57.55 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEEeCcchh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGSEFE 428 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag----~pfi~is~se~~ 428 (794)
..+.|.|++|+|||||+++|++.++ ..+..+++..+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 4588999999999999999999874 355556766553
No 361
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.38 E-value=0.55 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||||+|||||.+++++..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999754
No 362
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.34 E-value=0.13 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag 416 (794)
-.+|+||.|+|||++++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999988765
No 363
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.19 E-value=0.19 Score=54.56 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAI 411 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAI 411 (794)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999854443
No 364
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.10 E-value=0.087 Score=53.03 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
-+.|.||.|+|||||++++++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999985
No 365
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.08 E-value=0.36 Score=55.60 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCcchh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 428 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~se~~ 428 (794)
+.-|+|+|+||+|||++|+.++..+ |.++..+++..+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 4568999999999999999999876 4577777765543
No 366
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.07 E-value=1.7 Score=48.24 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEeC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea--------g~pfi~is~ 424 (794)
+.+++.+|+|+|||..+-..+-+. +...+.+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 469999999999998766665433 555555544
No 367
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.93 E-value=0.68 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
...-+.|.||+|+|||||++.+++..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33458899999999999999999855
No 368
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.90 E-value=0.5 Score=47.39 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|+|.|++|+|||+|..++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 469999999999999999998743
No 369
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.90 E-value=0.1 Score=53.69 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||.+++++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999865
No 370
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.89 E-value=0.89 Score=46.56 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
+..|+|.|++|+|||+|..++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998754
No 371
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.88 E-value=0.083 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||.|+|||||.+++++-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
No 372
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.87 E-value=0.13 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 373
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.82 E-value=0.09 Score=53.77 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.-+.|.||.|+|||||.+.+++-..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3588999999999999999998653
No 374
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.78 E-value=0.15 Score=50.04 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 423 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is 423 (794)
+-+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 368899999999999999998865 44444443
No 375
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.74 E-value=0.14 Score=47.21 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 376
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.74 E-value=0.45 Score=55.82 Aligned_cols=18 Identities=50% Similarity=0.684 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAK 409 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LAr 409 (794)
+.+++.||+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 479999999999999874
No 377
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.71 E-value=0.13 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 378
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.58 E-value=0.67 Score=54.37 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=17.2
Q ss_pred CceEEEEcCCCCcHHHHHHH
Q 003807 391 PKGILLTGAPGTGKTLLAKA 410 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArA 410 (794)
.+.+++.||+|+|||+.+-.
T Consensus 46 ~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHH
Confidence 46899999999999998743
No 379
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.56 E-value=0.6 Score=50.09 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..-+.|.|+||+|||+++.++++..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998764
No 380
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.56 E-value=1.2 Score=49.62 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEeC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea--------g~pfi~is~ 424 (794)
+.+++.+|+|+|||..+-..+-.. +...+.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 369999999999998766555433 455555544
No 381
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=90.55 E-value=0.79 Score=56.65 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIA 412 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA 412 (794)
..++|+||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568999999999999999993
No 382
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.53 E-value=0.16 Score=58.10 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGV 417 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~ 417 (794)
..|.|.|.+|+||||+|+++|..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999874
No 383
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.53 E-value=0.098 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||++.+++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999854
No 384
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.52 E-value=0.17 Score=51.28 Aligned_cols=28 Identities=39% Similarity=0.517 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.|-|+|..|||||++++.++. .|+|++.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vid 38 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVD 38 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEE
Confidence 688999999999999999988 8988775
No 385
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.49 E-value=0.96 Score=57.32 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
+...-+.|+||+|+|||||++.+.+...
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3345689999999999999999998763
No 386
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.45 E-value=0.15 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
.+++.|++|+|||+|+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 387
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.21 E-value=0.24 Score=49.91 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYR 422 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~i 422 (794)
.-|.|.|++|+||||+++.++..+ |.+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 357788999999999999999876 4566544
No 388
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=90.19 E-value=0.49 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=16.8
Q ss_pred ceEEEEcCCCCcHHHHH-HHHH
Q 003807 392 KGILLTGAPGTGKTLLA-KAIA 412 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LA-rAIA 412 (794)
+.+|+.||+|+|||..+ .++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999875 4343
No 389
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.17 E-value=0.19 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|+|.|++|+|||+|+.++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998864
No 390
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.12 E-value=0.15 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
.+.|.||+|+|||||.++|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 391
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.12 E-value=0.11 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||.|+|||||.+++++-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 392
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.10 E-value=0.13 Score=52.96 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
-+.|.||.|+|||||.+.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 393
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.06 E-value=0.11 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.-+.|.||.|+|||||.+++++-..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999998653
No 394
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.06 E-value=0.11 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag 416 (794)
-+.|.||.|+|||||.+++++-..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998653
No 395
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.02 E-value=0.14 Score=59.57 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=23.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 424 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea----g~pfi~is~ 424 (794)
.+++.||||||||+++..++..+ +..++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 57899999999999877776543 345555443
No 396
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.99 E-value=0.12 Score=53.10 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||.+++++-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999864
No 397
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.96 E-value=0.17 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
.|++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 398
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.96 E-value=0.15 Score=55.18 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVP 418 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~p 418 (794)
.-+.|.||+|+|||||++.|++.....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458899999999999999999987643
No 399
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.94 E-value=0.18 Score=46.19 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
.|++.|++|+|||+|..++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998743
No 400
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.88 E-value=0.14 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
.-+.|.||.|+|||||++.+++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999986
No 401
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.86 E-value=0.12 Score=52.91 Aligned_cols=24 Identities=46% Similarity=0.505 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag 416 (794)
-+.|.||.|+|||||.+.+++-..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998653
No 402
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.74 E-value=0.13 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||++.+++-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999865
No 403
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.70 E-value=0.13 Score=52.39 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||.+.+++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999865
No 404
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.68 E-value=0.19 Score=46.00 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|++.|++|+|||+|.+++.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999998743
No 405
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.59 E-value=0.2 Score=46.15 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
.|++.|++|+|||+|..++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 406
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.46 E-value=0.13 Score=53.61 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.-+.|.||.|+|||||++.+++-..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3588999999999999999998653
No 407
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.44 E-value=0.2 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
.|++.|++|+|||+|.+++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998754
No 408
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.38 E-value=0.14 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag 416 (794)
-+.|.||.|+|||||.+.+++-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 409
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.38 E-value=0.14 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.-+.|.||.|+|||||++.|++-..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4588999999999999999998653
No 410
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.36 E-value=0.73 Score=55.31 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 424 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is~ 424 (794)
.|..+|+.||.|+|||..+-..+-.. |...+.+..
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 35679999999999998775544332 555655544
No 411
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.34 E-value=0.16 Score=47.66 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 412
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.33 E-value=0.17 Score=48.34 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
...|++.|++|+|||+|..++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999764
No 413
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.33 E-value=0.24 Score=50.69 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYR 422 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea-------g~pfi~i 422 (794)
.-|.|.||+|+||||+++.++..+ |.+++..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 347888999999999999999876 6666544
No 414
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.23 E-value=0.2 Score=46.15 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 415
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.23 E-value=0.14 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 003807 393 GILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ 413 (794)
-|+|.|++|+|||+|.+.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 416
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.19 E-value=0.22 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|++.|++|+|||+|..++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 417
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.19 E-value=0.22 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|++.|++|+|||+|.+++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999875
No 418
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.19 E-value=0.14 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.-+.|.||.|+|||||++.|++...
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3588999999999999999998653
No 419
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.17 E-value=0.15 Score=53.18 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||.+.|++-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999999854
No 420
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.16 E-value=0.14 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~eag 416 (794)
-+.|.||.|+|||||.+.+++...
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998653
No 421
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.12 E-value=0.15 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||.+++++-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999864
No 422
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=89.07 E-value=1.3 Score=49.97 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.0
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 003807 391 PKGILLTGAPGTGKTLLAK 409 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LAr 409 (794)
++.+++.+|+|+|||..+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 3679999999999998643
No 423
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.05 E-value=0.21 Score=46.39 Aligned_cols=23 Identities=48% Similarity=0.749 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
.-|++.|+||+|||+|.+++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35999999999999999999763
No 424
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.03 E-value=0.23 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|++.|++|+|||+|...+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999998743
No 425
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.00 E-value=0.23 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|++.|++|+|||+|..++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999873
No 426
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.91 E-value=0.13 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
+.+.|.||+|+|||||++.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999876
No 427
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.91 E-value=0.15 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||.|+|||||.+.+++-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 428
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.90 E-value=0.2 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 429
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.88 E-value=0.36 Score=47.34 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag 416 (794)
..++|.|++|+|||+|+..++....
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999998753
No 430
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.86 E-value=0.24 Score=45.53 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 431
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.85 E-value=0.24 Score=46.73 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|+|.|++|+|||+|..++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 432
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.70 E-value=0.21 Score=47.39 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
.-|.|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 433
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.68 E-value=0.62 Score=50.34 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.|+||+|||||..++.+..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999753
No 434
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.66 E-value=0.21 Score=51.07 Aligned_cols=30 Identities=20% Similarity=0.064 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHH-HHHHHHH--hcCCCEEEE
Q 003807 393 GILLTGAPGTGKTL-LAKAIAG--EAGVPFFYR 422 (794)
Q Consensus 393 gVLL~GPPGTGKT~-LArAIA~--eag~pfi~i 422 (794)
-.+++||-|+|||+ |.+.+-+ +.+...+.+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 36789999999999 5555532 335555444
No 435
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.61 E-value=0.26 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
.|++.|++|+|||+|..++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 436
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.59 E-value=1.8 Score=42.79 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
.-|+|.|++|+|||+|..++.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999764
No 437
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.53 E-value=0.17 Score=52.81 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||.+.+++..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999876
No 438
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.46 E-value=0.25 Score=45.74 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 003807 393 GILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ 413 (794)
-|++.|++|+|||+|...+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 439
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.44 E-value=0.25 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
.|++.|++|+|||+|..++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 440
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.39 E-value=0.27 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|++.|++|+|||+|.+++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998743
No 441
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.39 E-value=0.24 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|++.|++|+|||+|..++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 442
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.38 E-value=0.23 Score=45.88 Aligned_cols=21 Identities=52% Similarity=0.926 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 003807 393 GILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ 413 (794)
-|+|.|+||+|||+|.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.38 E-value=0.5 Score=47.64 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=26.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc--CCCEEEEe
Q 003807 389 KLPKGILLTGAPGTGKTLLAKAIAGEA--GVPFFYRA 423 (794)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArAIA~ea--g~pfi~is 423 (794)
..+..+++.|.+|+|||+++..+|..+ |.....++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 334578899999999999999998765 55555554
No 444
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.35 E-value=0.26 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999998754
No 445
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.32 E-value=0.46 Score=48.21 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
+-|.|.|++|+||||+++.++..++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 45888999999999999999999986443
No 446
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.29 E-value=0.27 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
-.|++.|++|+|||+|..++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 359999999999999999998754
No 447
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=88.27 E-value=2.7 Score=41.91 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.8
Q ss_pred ceEEEEcCCCCcHHHHH
Q 003807 392 KGILLTGAPGTGKTLLA 408 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LA 408 (794)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999853
No 448
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=88.26 E-value=0.64 Score=53.16 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.9
Q ss_pred CceEEEEcCCCCcHHHH
Q 003807 391 PKGILLTGAPGTGKTLL 407 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~L 407 (794)
.+.+++.+|+|+|||+.
T Consensus 60 ~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEEcCCCcHHHHH
Confidence 45799999999999984
No 449
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.26 E-value=0.32 Score=44.99 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|++.|++|+|||+|..++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 450
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.25 E-value=0.29 Score=45.72 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
+..|++.|++|+|||+|..++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999763
No 451
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.19 E-value=0.15 Score=55.42 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||||.|.||+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999854
No 452
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.16 E-value=0.26 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|++.|++|+|||+|.+++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 453
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.15 E-value=0.29 Score=50.32 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVP 418 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~p 418 (794)
++-|.|.|++|+||||+++.++..+ +.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3468899999999999999998866 555
No 454
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.11 E-value=0.28 Score=45.95 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|++.|++|+|||+|.+++.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 359999999999999999998743
No 455
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.11 E-value=0.28 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|++.|++|+|||+|+.++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998753
No 456
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=88.08 E-value=0.63 Score=57.95 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 423 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g~pfi~is 423 (794)
+.+|++||+|+|||+.+-..+... +...+++.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~ 234 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTS 234 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 469999999999998765544433 44455544
No 457
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.04 E-value=2.1 Score=43.22 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
+..|+|.|++|+|||+|..++.+.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998643
No 458
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.03 E-value=0.33 Score=45.83 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
+--|++.|++|+|||+|..++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999885
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.02 E-value=0.32 Score=46.79 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
...|++.|++|+|||+|...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 460
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.94 E-value=0.29 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|++.|++|+|||+|..++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999874
No 461
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.89 E-value=0.29 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
.|+|.|++|+|||+|..++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999998743
No 462
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.87 E-value=0.25 Score=46.89 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
.-|.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 463
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.84 E-value=0.28 Score=46.67 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
.-|++.|++|+|||+|.+.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 464
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=87.83 E-value=2.3 Score=47.38 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---C-CCEEEEeC
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA---G-VPFFYRAG 424 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea---g-~pfi~is~ 424 (794)
+.+||+||+|+|||..+-.++... + ...+.+..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P 165 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 368999999999999886666542 3 25555543
No 465
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.80 E-value=0.28 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|++.|++|+|||+|.+++.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998743
No 466
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.79 E-value=0.81 Score=56.97 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.2
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAI 411 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAI 411 (794)
+.+++++|+|+|||+++-..
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHH
Confidence 46999999999999955443
No 467
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.73 E-value=0.34 Score=49.43 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAGEAG 416 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~eag 416 (794)
.+.-|.|.|++|+|||++++.++..++
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345678889999999999999998654
No 468
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.69 E-value=0.28 Score=45.76 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ 413 (794)
..|++.|++|+|||+|..++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999965
No 469
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.67 E-value=0.26 Score=59.38 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
..++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999887777654
No 470
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.61 E-value=0.69 Score=52.59 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=16.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAIA 412 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA 412 (794)
+.+|+.+|+|+|||+.+..-+
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~ 61 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPA 61 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 469999999999998554433
No 471
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.54 E-value=0.23 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||+|+|||||.++|++-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 458899999999999999999843
No 472
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.48 E-value=0.34 Score=48.76 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi~ 421 (794)
.-+.|.||.|+||||+++.+++. +..+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 44779999999999999999987 444433
No 473
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=87.42 E-value=0.6 Score=54.71 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.2
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 003807 392 KGILLTGAPGTGKTLLAKAI 411 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAI 411 (794)
.-+.|.||+|+|||||++.+
T Consensus 349 e~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEeeCCCCHHHHHHHH
Confidence 34889999999999999764
No 474
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.39 E-value=0.49 Score=52.77 Aligned_cols=121 Identities=16% Similarity=0.247 Sum_probs=90.1
Q ss_pred CeEEEEcCcccccccccccccchHHHHHHHHHhhhccccCCcEEEEEE---------cC---CCCCCChhhcCCCccceE
Q 003807 451 PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA---------TN---LPDILDPALTRPGRFDRH 518 (794)
Q Consensus 451 P~ILfIDEIDaL~~~r~~~~~~~~~~LnqLL~eLDg~~~~~~VIVIaA---------TN---~p~~LD~ALlRpGRFdr~ 518 (794)
|.|+||||+|.+. ...++.|+..|+... ..++|+++ |+ .|..|++.+++ ||..
T Consensus 296 ~~VliIDEa~~l~----------~~a~~aLlk~lEe~~--~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~- 360 (456)
T 2c9o_A 296 PGVLFVDEVHMLD----------IECFTYLHRALESSI--APIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI- 360 (456)
T ss_dssp ECEEEEESGGGCB----------HHHHHHHHHHTTSTT--CCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-
T ss_pred ceEEEEechhhcC----------HHHHHHHHHHhhccC--CCEEEEecCCccccccccccccccccCChhHHh--hcce-
Confidence 4699999999993 478899999998643 33555555 32 26789999998 8866
Q ss_pred EEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH--------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 003807 519 IVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR--------DLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 586 (794)
Q Consensus 519 I~V~lPd~~eR~eILk~~l~~~~l~-~dvdl~~IAr--------DL~nlvn~Aal~Aa~~~~~~It~~dl~~Ai~ri 586 (794)
+.+++|+.++..++|+..+...... ++..+..+++ ...++++.|...|..+++..|+.+|++.++..+
T Consensus 361 ~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 6999999999999999887543322 1222233332 566778888888988999999999999998654
No 475
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.38 E-value=0.33 Score=45.36 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|++.|++|+|||+|..++.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 469999999999999999998743
No 476
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.30 E-value=0.34 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
..|+|.|++|+|||+|..++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
No 477
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.28 E-value=0.45 Score=50.59 Aligned_cols=23 Identities=48% Similarity=0.553 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-++|+|+.|+||||+.+.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999764
No 478
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.27 E-value=0.16 Score=55.46 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
-+.|.||+|+|||||.+.||+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999854
No 479
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.14 E-value=0.28 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||+|.|++-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 358999999999999999999864
No 480
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.12 E-value=0.26 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
.|++.|++|+|||+|..++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
No 481
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.08 E-value=0.35 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
.|+|.|++|+|||+|..++.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999998753
No 482
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.07 E-value=1.7 Score=42.12 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
.|+|.|++|+|||+|..++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 483
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.04 E-value=0.55 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..++++.||+|+|||++++.++...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999997653
No 484
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.03 E-value=0.35 Score=45.96 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|+|.|++|+|||+|..++.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998743
No 485
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.00 E-value=0.35 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
.|++.|++|+|||+|.+++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 486
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.99 E-value=0.42 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ 413 (794)
...|++.|++|+|||+|...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999964
No 487
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.99 E-value=0.23 Score=52.64 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
.-+.|.||.|+|||||.+.|++..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 348899999999999999999854
No 488
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=86.99 E-value=1.3 Score=54.43 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CC--CEEEEeCcchhhh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGEA---GV--PFFYRAGSEFEEM 430 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~ea---g~--pfi~is~se~~e~ 430 (794)
+.++||.++.|+|||..|-+++.++ +. +++.+....+...
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Q 214 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQ 214 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHH
Confidence 3579999999999999988777654 32 5555555455433
No 489
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.94 E-value=0.38 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
...|+|.|++|+|||+|..++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 490
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.90 E-value=0.36 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|+|.|++|+|||+|..++.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 369999999999999999998743
No 491
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.90 E-value=0.16 Score=49.28 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~e 414 (794)
.-+.|.|++|+|||+|.+++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998754
No 492
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.82 E-value=0.35 Score=45.46 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 003807 390 LPKGILLTGAPGTGKTLLAKAIAG 413 (794)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArAIA~ 413 (794)
.+..|++.|++|+|||+|...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999864
No 493
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.76 E-value=0.42 Score=51.44 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~eag~pfi 420 (794)
+|++|.|++|+|||++|.++... |..++
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 68999999999999999999875 54444
No 494
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.73 E-value=0.35 Score=46.60 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
-|++.|++|+|||+|.+++.+.
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999873
No 495
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.73 E-value=0.38 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003807 393 GILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~ea 415 (794)
.|+|.|++|+|||+|..++.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 496
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.72 E-value=0.29 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
-|++.|++|+|||+|..++.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999875
No 497
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.70 E-value=0.37 Score=46.34 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 003807 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (794)
Q Consensus 392 kgVLL~GPPGTGKT~LArAIA~ea 415 (794)
..|++.|++|+|||+|..++.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 498
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.67 E-value=0.41 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003807 393 GILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 393 gVLL~GPPGTGKT~LArAIA~e 414 (794)
-+.|.||+|+|||||.+++++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999984
No 499
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.66 E-value=1.6 Score=54.63 Aligned_cols=34 Identities=24% Similarity=0.110 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEEeC
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAG---EAGVPFFYRAG 424 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~---eag~pfi~is~ 424 (794)
|..+|++||+|+|||..|-..+- ..+...+.+..
T Consensus 624 p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvP 660 (1151)
T 2eyq_A 624 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 660 (1151)
T ss_dssp CCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred cCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEec
Confidence 45799999999999987653332 23555555543
No 500
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.51 E-value=0.47 Score=44.41 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 003807 391 PKGILLTGAPGTGKTLLAKAIAGE 414 (794)
Q Consensus 391 PkgVLL~GPPGTGKT~LArAIA~e 414 (794)
...|++.|++|+|||+|..++.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
Done!