Query 003808
Match_columns 794
No_of_seqs 380 out of 2140
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 12:25:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 1E-131 3E-136 1113.1 55.2 743 1-794 3-779 (1180)
2 KOG1046 Puromycin-sensitive am 100.0 2.3E-80 5E-85 739.2 43.6 585 13-720 29-634 (882)
3 PRK14015 pepN aminopeptidase N 100.0 3.7E-75 8.1E-80 687.7 62.3 559 14-701 14-609 (875)
4 TIGR02412 pepN_strep_liv amino 100.0 5.2E-75 1.1E-79 694.8 51.3 564 16-716 11-596 (831)
5 TIGR02414 pepN_proteo aminopep 100.0 1.5E-73 3.2E-78 672.0 59.3 560 16-701 4-599 (863)
6 TIGR02411 leuko_A4_hydro leuko 100.0 8.3E-68 1.8E-72 608.3 41.3 435 14-519 5-453 (601)
7 COG0308 PepN Aminopeptidase N 100.0 9.5E-66 2.1E-70 614.2 47.3 465 22-574 25-509 (859)
8 PF01433 Peptidase_M1: Peptida 100.0 6.2E-59 1.3E-63 519.0 27.2 372 15-442 2-390 (390)
9 KOG1047 Bifunctional leukotrie 100.0 4.1E-52 9E-57 441.1 28.8 440 1-516 1-459 (613)
10 PF13485 Peptidase_MA_2: Pepti 98.9 6.7E-10 1.5E-14 102.9 3.8 102 346-465 26-128 (128)
11 COG3975 Predicted protease wit 98.6 1.2E-06 2.5E-11 95.4 16.6 225 277-516 182-434 (558)
12 PF11838 ERAP1_C: ERAP1-like C 95.9 0.047 1E-06 59.2 10.9 140 638-791 1-158 (324)
13 PF13646 HEAT_2: HEAT repeats; 95.6 0.11 2.3E-06 44.2 9.6 71 659-737 3-73 (88)
14 PF07607 DUF1570: Protein of u 95.1 0.016 3.4E-07 53.1 2.9 39 347-385 3-43 (128)
15 PF10460 Peptidase_M30: Peptid 95.0 0.19 4.1E-06 54.3 10.9 138 346-509 140-285 (366)
16 PF05299 Peptidase_M61: M61 gl 94.6 0.015 3.2E-07 52.7 1.2 43 346-388 5-58 (122)
17 KOG1932 TATA binding protein a 94.6 0.04 8.6E-07 65.8 5.0 99 434-538 445-554 (1180)
18 PF04450 BSP: Peptidase of pla 93.6 1.1 2.4E-05 44.8 12.4 110 343-504 94-204 (205)
19 PRK09687 putative lyase; Provi 92.6 1 2.3E-05 47.6 11.1 99 661-791 164-262 (280)
20 PRK09687 putative lyase; Provi 92.4 0.93 2E-05 48.0 10.6 102 663-794 135-236 (280)
21 PRK13800 putative oxidoreducta 87.2 3.7 8.1E-05 51.1 11.4 104 661-794 780-883 (897)
22 PF13646 HEAT_2: HEAT repeats; 86.8 1.8 4E-05 36.4 6.1 54 659-716 35-88 (88)
23 PF10023 DUF2265: Predicted am 79.7 2.4 5.2E-05 45.3 4.6 38 345-388 165-202 (337)
24 PRK13800 putative oxidoreducta 76.4 15 0.00033 45.7 11.0 74 636-719 607-680 (897)
25 PF10026 DUF2268: Predicted Zn 76.0 10 0.00023 37.7 7.8 40 346-385 66-109 (195)
26 PF02985 HEAT: HEAT repeat; I 75.6 4.6 0.0001 26.8 3.5 26 692-719 3-28 (31)
27 KOG0567 HEAT repeat-containing 74.1 4.1 8.9E-05 41.8 4.2 53 669-723 200-252 (289)
28 PF11940 DUF3458: Domain of un 72.9 45 0.00098 36.7 12.3 64 639-702 69-146 (367)
29 PF13513 HEAT_EZ: HEAT-like re 71.8 12 0.00027 28.3 5.6 27 690-718 29-55 (55)
30 COG1413 FOG: HEAT repeat [Ener 69.3 28 0.0006 37.7 9.9 94 657-776 45-138 (335)
31 COG4324 Predicted aminopeptida 69.2 5 0.00011 40.7 3.5 36 346-387 198-233 (376)
32 smart00567 EZ_HEAT E-Z type HE 68.0 3.4 7.3E-05 27.1 1.5 27 705-735 1-27 (30)
33 PF03130 HEAT_PBS: PBS lyase H 67.0 7.2 0.00016 25.1 2.8 25 707-735 1-25 (27)
34 PF12315 DUF3633: Protein of u 63.8 15 0.00033 36.4 5.6 40 347-388 95-134 (212)
35 PF03272 Enhancin: Viral enhan 60.9 1.2E+02 0.0025 37.1 13.5 114 265-385 144-276 (775)
36 smart00731 SprT SprT homologue 55.8 18 0.0004 34.0 4.7 65 287-359 5-73 (146)
37 PRK04860 hypothetical protein; 53.8 33 0.00071 32.9 6.0 68 282-358 6-76 (160)
38 PF13699 DUF4157: Domain of un 49.5 19 0.0004 30.1 3.2 67 288-357 6-73 (79)
39 PF01863 DUF45: Protein of unk 48.6 35 0.00076 34.0 5.7 68 279-360 108-179 (205)
40 COG1413 FOG: HEAT repeat [Ener 44.4 1.1E+02 0.0024 33.0 9.2 61 659-721 109-179 (335)
41 PF01447 Peptidase_M4: Thermol 36.9 1.2E+02 0.0027 28.7 7.0 28 275-303 66-93 (150)
42 PF04826 Arm_2: Armadillo-like 36.4 3.3E+02 0.0071 28.4 10.6 126 658-789 15-161 (254)
43 PF06114 DUF955: Domain of unk 35.8 36 0.00078 30.1 3.2 18 345-362 42-59 (122)
44 PF10263 SprT-like: SprT-like 35.2 50 0.0011 31.3 4.2 17 344-360 59-75 (157)
45 PF01435 Peptidase_M48: Peptid 31.5 54 0.0012 33.0 4.0 19 346-364 90-108 (226)
46 PHA02456 zinc metallopeptidase 31.5 31 0.00068 30.2 1.8 12 346-357 80-91 (141)
47 PF12755 Vac14_Fab1_bd: Vacuol 28.0 2.5E+02 0.0054 24.4 6.9 27 692-720 30-56 (97)
48 KOG4535 HEAT and armadillo rep 28.0 28 0.0006 38.8 1.1 83 691-781 575-665 (728)
49 KOG2259 Uncharacterized conser 27.2 30 0.00065 40.1 1.2 46 690-737 374-421 (823)
50 PF12725 DUF3810: Protein of u 27.0 33 0.00071 37.0 1.5 39 347-398 198-236 (318)
51 PF13574 Reprolysin_2: Metallo 26.3 42 0.00092 32.6 2.0 12 346-357 112-123 (173)
52 PRK03001 M48 family peptidase; 26.1 1E+02 0.0023 32.5 5.1 15 345-359 124-138 (283)
53 PRK03982 heat shock protein Ht 25.5 1.2E+02 0.0025 32.3 5.3 16 345-360 125-140 (288)
54 COG3227 LasB Zinc metalloprote 25.4 1.8E+02 0.0038 32.8 6.6 104 272-384 265-377 (507)
55 PRK01345 heat shock protein Ht 24.1 1.2E+02 0.0025 32.8 5.0 67 285-360 69-139 (317)
56 PF07571 DUF1546: Protein of u 23.5 90 0.002 26.8 3.3 41 704-744 19-61 (92)
57 KOG1824 TATA-binding protein-i 22.8 1.2E+02 0.0027 36.9 5.1 22 700-721 341-362 (1233)
58 PRK04351 hypothetical protein; 22.7 95 0.0021 29.4 3.5 12 345-356 61-72 (149)
59 KOG0166 Karyopherin (importin) 22.2 6.4E+02 0.014 29.1 10.4 116 659-794 113-250 (514)
60 TIGR02270 conserved hypothetic 21.9 2.2E+02 0.0047 32.0 6.7 77 640-721 40-116 (410)
61 COG1451 Predicted metal-depend 20.5 1.7E+02 0.0036 29.9 5.0 67 280-360 120-190 (223)
62 PF04293 SpoVR: SpoVR like pro 20.2 2.6E+02 0.0056 31.4 6.7 35 348-388 246-280 (426)
63 COG4783 Putative Zn-dependent 20.0 81 0.0018 35.4 2.8 52 301-356 90-141 (484)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=1.4e-131 Score=1113.11 Aligned_cols=743 Identities=39% Similarity=0.639 Sum_probs=598.1
Q ss_pred CCCCCCCCC----cCCCCCCCCeEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcceEEEeccCceeeEEEEcCeeee
Q 003808 1 MAKPRKPKN----EETKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (794)
Q Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~~~~l~I~~v~v~g~~~~ 73 (794)
|++.+++++ ++..+++++..++||+|+|+ ||+.++++.|.++|+|.+ +++..|.|||++|.|.+|.|+|.+..
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 444444444 55567777788999999999 999999999999999984 67999999999999999999999999
Q ss_pred eeeCCCCcccchhhhhccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCCC
Q 003808 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (794)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~ 153 (794)
|.|.++....+..+ .|..+. .+..........|... ..+.|+|.|.++++.... +.+ ..
T Consensus 83 f~y~d~~q~~~~~~-~~~~~l-~~~s~~~~~~~~y~~l--~~~~g~L~I~ipk~~~~~--~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDPTQNDCTDE-IWQRVL-DPASQSHFLAVQYEDL--DEDNGELLIKIPKESKKV--GEE---------------LK 141 (1180)
T ss_pred eeecchhhhhhhhh-hhhhhh-hhhhhhhhHHHhhhcc--ccCCCeEEEEcCchhhhh--hhh---------------cc
Confidence 99998754444222 222111 0111111122223221 223678999876542111 110 01
Q ss_pred ceEEEEEEEEeccCcceEEEec---------eEeccccc--CCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEcCcccc
Q 003808 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (794)
Q Consensus 154 ~~~~~~~y~~~~~~~G~~f~~~---------~~~T~~e~--~~Ar~wfPC~D~p~~katf~l~i~~p~~~~avsng~l~~ 222 (794)
...++|+|.+.+|..|++|++. +++|.+.+ .+||+||||+|+++.+|||+|++++|++++++++|++.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2347799999999999999764 34554433 368999999999999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEecCCCCcceeeEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 003808 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (794)
Q Consensus 223 ~~~~~~~~~~~~~~f~~t~p~s~y~iafavg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~ 302 (794)
++.++ |.+++|++|..+.|+++..||||||+|+.+..+.+..+++||+|+..+.+++++-.+.++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 99876 78899999999999999999999999999988888999999999999999999999999999999999988999
Q ss_pred CCccEEEECCCCcccccccccchhhhccccccCcccchhhhHHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHH
Q 003808 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (794)
Q Consensus 303 ~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~ 382 (794)
+.|++||||..+..- ...++|.++++++||+.+++|+.+.++..+|..||.||||+++||..|+|.||.+|+|.||..
T Consensus 301 ~~~k~VFvd~~~~~i--~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAVEI--SSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCccee--eecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 999999998643222 233479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchhHHHHHHHhhcceeeecc-CCCcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhh----chHH
Q 003808 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (794)
Q Consensus 383 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~l----G~~~ 457 (794)
+++++++|+|+|||+.++.+++++..|. .++..+.. +++++. .| -.|+++.+|.+.+++ |.=.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence 9999999999999999999999988776 34444431 111110 01 245666666655554 2233
Q ss_pred HHHHHHHHHHhhcCCC-CCCCCCHHHHHHHHHHhcCCCcccHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeecC
Q 003808 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (794)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~~~st~~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~ 536 (794)
....+++.+...+.++ .+...+.+.|.++++.++. ..++.||++|+++.|+|.+.+.+.||++++.|++.+.|.+.
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 4444555555554444 1122344555555555542 12589999999999999999999999999999999999654
Q ss_pred CCCCCCCc-ccc-----CCCCCC-C---CCCCCCCcceeEEEEEecCCcccccccccCCCcceEEEeeecccchhhhhcC
Q 003808 537 VKPDSRTP-VLS-----SNTDSE-N---RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (794)
Q Consensus 537 ~~~~~~~~-~~~-----~~~~~~-~---~~~~~~~~~pltiri~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~k 606 (794)
........ +++ ...+.+ . ..+...|+||||||+||.||+|+|++ +| ++.|++.||||||| +|.+|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence 33322111 110 011111 1 11224699999999999999999987 34 56699999999999 45577
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCeeEEEecCCCceEEEEcccCcHHHHHHHHhhcCChHHHHHHHHHHHcCCCC
Q 003808 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (794)
Q Consensus 607 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir~D~~~~~l~~v~~~~~~~m~~~qL~~d~dv~aq~eai~~l~~~~~~ 686 (794)
+||.+..+|+|++.| ++.+| .++|++|||+|||++|||+++++||++||++||++||||+||+|||++|...|+.
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 888888899988877 65654 4899999999999999999999999999999999999999999999999999765
Q ss_pred chhHHHHHHHHhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003808 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 766 (794)
Q Consensus 687 ~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f~~~~~~~~~~i~~~n~f~~~~~y~~~~~i~~ 766 (794)
..+++|+|+|.|+|||||||++||.|||++++++.+|.|++||+++|+++||+.+++|||||||+||++|||||+||.
T Consensus 674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCChHHHHHHHHHhhhccC
Q 003808 767 AVAMVRAADNKSPREAVEFVLQLLKVMD 794 (794)
Q Consensus 767 a~~~~r~~~~~~p~~~~~fl~~~l~~nd 794 (794)
|||.+|+.+|+||.+|++||||||||||
T Consensus 752 a~a~lR~~~g~cp~~V~~FlLdLlkyND 779 (1180)
T KOG1932|consen 752 AFASLRGREGKCPKEVKAFLLDLLKYND 779 (1180)
T ss_pred HHHHhccccCCChHHHHHHHHHHhhccc
Confidence 9999999999999999999999999998
No 2
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-80 Score=739.19 Aligned_cols=585 Identities=19% Similarity=0.262 Sum_probs=442.8
Q ss_pred CCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcC-CcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhcc
Q 003808 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWR 91 (794)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~~~~I~L~~~~l~I~~v~v~g~~~~~~~~~~~~~~~~~~~~~~ 91 (794)
++....++|+||+|.|.+++....|.|.+.|.+.+. +++.|+||+.++.|.++.+......-.-... .. .
T Consensus 29 ~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~---~~-~----- 99 (882)
T KOG1046|consen 29 YRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLE---VS-V----- 99 (882)
T ss_pred ccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccc---cc-c-----
Confidence 466788999999999999999999999999999984 6899999999999999988432211000000 00 0
Q ss_pred ccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCCCc-eEEEEEEEEeccCcce
Q 003808 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNV-KLVRIDYWVEKVEVGI 170 (794)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~~y~~~~~~~G~ 170 (794)
........+.+.+.. .+..+. .++| .+.|.|.++... |+|+..|...+ .|.
T Consensus 100 --------------------~~~~~~~~l~~~~~~---~l~~~~-~y~L--~i~f~g~l~~~~~G~y~s~y~~~~--~~~ 151 (882)
T KOG1046|consen 100 --------------------EEKEQEETLVFPLNE---TLLAGS-SYTL--TIEFTGKLNDSSEGFYRSSYTDSE--GSE 151 (882)
T ss_pred --------------------cccccceEEEEEccc---ccccCC-eEEE--EEEEeEeecCCcceeeeecccCCC--Cce
Confidence 000000124443221 111111 1333 367888888775 99999997543 232
Q ss_pred EEEeceEecccccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcceeeEE
Q 003808 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (794)
Q Consensus 171 ~f~~~~~~T~~e~~~Ar~wfPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~iaf 250 (794)
++++.||+||++||++|||||+|++||||.|+|.+|++++|+|||+.+++... ++++++.+|+.|++||+|++||
T Consensus 152 ---~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~~--~~~~~~~~F~~Tp~MstYLvAf 226 (882)
T KOG1046|consen 152 ---KSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEPV--DDGWKTTTFEKTPKMSTYLVAF 226 (882)
T ss_pred ---EEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCcccccccc--cCCeeEEEEEecCCCchhhhee
Confidence 57899999999999999999999999999999999999999999999877653 3459999999999999999999
Q ss_pred EEeeceEeecCCC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCcccccccccchhhh
Q 003808 251 AVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (794)
Q Consensus 251 avg~f~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~ 328 (794)
+||+|+..+.... ..+++|++|+...+..++++.+.++|+||+++||++||++|+|+|+||++..++|||| ||++|
T Consensus 227 ~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENw--GLvty 304 (882)
T KOG1046|consen 227 AVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENW--GLVTY 304 (882)
T ss_pred eeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcC--cceee
Confidence 9999999877654 7899999999999999999999999999999999999999999999999999999999 79999
Q ss_pred -ccccccCcccchhhh--HHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhcce
Q 003808 329 -SSQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405 (794)
Q Consensus 329 -~~~lL~~~~~~~~~~--~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~ 405 (794)
+..+|+++....... ....+||||||||||||+|||+||+|+|||||||+||+++.++..++.+...-. .....+
T Consensus 305 re~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~--~~~~~l 382 (882)
T KOG1046|consen 305 RETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQ--FLLENL 382 (882)
T ss_pred eehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHH--HHHHHH
Confidence 678999987654433 344599999999999999999999999999999999999999988776543211 111111
Q ss_pred eeeccCCCcccCCCCccccC-----CCCcccccccceeeehHHHHHHHHHHhhchHHHHHHHHHHHHhhcCCCCCCCCCH
Q 003808 406 CKADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLST 480 (794)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~L~~yl~~~~~~~~~~~~st 480 (794)
..++..|+..+++++ .+.++.++|+.++|.||++|||||+..+|++.|++||+.||.+++++| +++
T Consensus 383 -----~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~n----a~~ 453 (882)
T KOG1046|consen 383 -----ERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSN----AKT 453 (882)
T ss_pred -----HHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCC----CCc
Confidence 112222322233333 234556789999999999999999999999999999999999999997 466
Q ss_pred HHHHHHHHHhcCCCcccHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeecCCCCCCCCccccCCCCCCCCCCCCC
Q 003808 481 KEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (794)
Q Consensus 481 ~~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (794)
+|+++.++.. .+.|++.||+.|+.|+|||+++|..+++ .+.++|.++..... ..+....
T Consensus 454 ~DLw~~l~~~---~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~--------------~~~~~~~ 512 (882)
T KOG1046|consen 454 EDLWDALEEG---SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQERFLSDPD--------------PSEDNYL 512 (882)
T ss_pred hhHHHHHhcc---CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEehhhhccCCC--------------ccccCcc
Confidence 7776666622 2579999999999999999999998764 77788877653211 1123568
Q ss_pred CcceeEEEEEecCCcccccccccCCCcceEEEeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCeeEEE
Q 003808 561 WPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIR 640 (794)
Q Consensus 561 ~~~pltiri~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir 640 (794)
|.+|+++....... + . -.| ++.. + .. + ....+.+||+
T Consensus 513 w~iPl~~~~~~~~~-~--~------~~~--~~~~--~-------------~~----------~-------~l~~~~~wi~ 549 (882)
T KOG1046|consen 513 WWIPLTYTTSGSGS-V--P------KFW--LSSK--S-------------TT----------I-------KLPESDQWIK 549 (882)
T ss_pred cceeEEEEcCCCCc-c--c------eee--ecCC--C-------------cc----------e-------ecCCCCeEEE
Confidence 99999997653211 1 0 011 1100 0 00 0 0122338999
Q ss_pred ecCCCceEEEEcccCcHHHH---HHHHhhcCChH-----HHH-HHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHH
Q 003808 641 ADPEMEYLAEIHFNQPVQMW---INQLEKDGDVV-----AQA-QAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEA 711 (794)
Q Consensus 641 ~D~~~~~l~~v~~~~~~~m~---~~qL~~d~dv~-----aq~-eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~A 711 (794)
+|++..+++|| ++++.+| +.||.. ++.+ +|+ ..+.+|++....+...+..|...+.+|. .|.++..|
T Consensus 550 ~N~~~~g~yRV--~Yd~~~w~~l~~~l~~-~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~-~~~p~~~~ 625 (882)
T KOG1046|consen 550 VNLEQTGYYRV--NYDDENWALLIEQLKN-HESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNET-DYVPWSAA 625 (882)
T ss_pred EeCCcceEEEE--EeCHHHHHHHHHHHhh-cCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccc-ccchHHHH
Confidence 99999999999 5577777 667765 4433 233 6666788776667777777899999986 58999999
Q ss_pred HHHHHhhcc
Q 003808 712 AYALANTAS 720 (794)
Q Consensus 712 a~aL~~~~~ 720 (794)
+.+|..+..
T Consensus 626 ~~~l~~~~~ 634 (882)
T KOG1046|consen 626 IRSLYKLHS 634 (882)
T ss_pred HHHHHHHhh
Confidence 888888776
No 3
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=3.7e-75 Score=687.67 Aligned_cols=559 Identities=16% Similarity=0.218 Sum_probs=420.0
Q ss_pred CCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc--CCcceEEEeccCceeeEEEEcCeee---eeeeCCCCcccchhhh
Q 003808 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPT---EFEYYPHNHQNVENEK 88 (794)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~--~~~~~I~L~~~~l~I~~v~v~g~~~---~~~~~~~~~~~~~~~~ 88 (794)
...++|.+.||+|+|++++++..++|.++|+..+ .+++.|.||+++|+|.+|.+||+++ .|.+.+.
T Consensus 14 y~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~~--------- 84 (875)
T PRK14015 14 YRPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDEE--------- 84 (875)
T ss_pred cCCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcCC---------
Confidence 4567899999999999999999999999998765 4578899999999999999999877 4554421
Q ss_pred hccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCC---CceEEEEEEEEec
Q 003808 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ---NVKLVRIDYWVEK 165 (794)
Q Consensus 89 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~---~~~~~~~~y~~~~ 165 (794)
.|+|... | . .++++ +.|++.+.. ..|+|+
T Consensus 85 ------------------------------~L~I~~l-~-----~---~~~l~--I~y~~~P~~n~~l~Gly~------- 116 (875)
T PRK14015 85 ------------------------------GLTIENL-P-----D---RFTLE--IETEIDPEANTALEGLYR------- 116 (875)
T ss_pred ------------------------------EEEEecC-C-----c---cEEEE--EEEEEecCCCCCceeeEE-------
Confidence 3666311 0 0 12222 333333321 124333
Q ss_pred cCcceEEEeceEecccccCCcceEEeeCCCCCCeeEEEEEEEEeC-Ce-EEEEcCcccceeeccCCCCceEEEEecCCCC
Q 003808 166 VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQ-NL-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPV 243 (794)
Q Consensus 166 ~~~G~~f~~~~~~T~~e~~~Ar~wfPC~D~p~~katf~l~i~~p~-~~-~avsng~l~~~~~~~~~~~~~~~~f~~t~p~ 243 (794)
...+++|||||++||+||||+|+|+.||||+++|++|+ .| +++|||+++++.. ..+++++++|+.++||
T Consensus 117 -------s~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~--~~~g~~~~~w~~~~Pm 187 (875)
T PRK14015 117 -------SGGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGE--LPDGRHWATWEDPFPK 187 (875)
T ss_pred -------ECCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCcccccee--ccCCeEEEEEEeCCCc
Confidence 23367999999999999999999999999999999999 48 6899999987642 2467899999999999
Q ss_pred cceeeEEEEeeceEeecC----C--CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCccc
Q 003808 244 SAKWITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVS 317 (794)
Q Consensus 244 s~y~iafavg~f~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~ 317 (794)
|+|+++|+||+|+++++. . +.++++|++|+..+.+.++++.++++|+|||++||.||||++|++|++|++..++
T Consensus 188 psYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~Ga 267 (875)
T PRK14015 188 PSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGA 267 (875)
T ss_pred ccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcc
Confidence 999999999999998753 1 3678999999999999999999999999999999999999999999999887789
Q ss_pred ccccccchhhhc-cccccCcccc-hhhh-HHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhH
Q 003808 318 SSTFGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA 394 (794)
Q Consensus 318 ~~~~gagl~~~~-~~lL~~~~~~-~~~~-~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~ 394 (794)
|||+ ||++|. ..+|.++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.++.....+....
T Consensus 268 MEN~--Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~ 345 (875)
T PRK14015 268 MENK--GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVK 345 (875)
T ss_pred cccc--cccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHH
Confidence 9999 788994 5577776542 2222 234589999999999999999999999999999999998887766543322
Q ss_pred HHHHHHhhcceeeeccCCCcccCCCCccccCCC---CcccccccceeeehHHHHHHHHHHhhchHHHHHHHHHHHHhhcC
Q 003808 395 RYRRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQG 471 (794)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~L~~yl~~~~~ 471 (794)
++......... .+..++.+..+++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|+++|++
T Consensus 346 ~~~~~~~l~~~-------~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~ 418 (875)
T PRK14015 346 RIEDVRVLRAA-------QFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDG 418 (875)
T ss_pred HHHHHHHHhhh-------cccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 22111111110 111111122223321 23456789999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcccHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeecCCCCCCCCccccCCCC
Q 003808 472 ASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTD 551 (794)
Q Consensus 472 ~~~~~~~st~~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~ 551 (794)
++ +++++|++.+++++ |.|+.+|+ +|++++|+|+++|+.+|+..++.++++++|.+....
T Consensus 419 ~~----at~~Df~~ale~as---g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~------------ 478 (875)
T PRK14015 419 QA----VTCEDFVAAMEDAS---GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTP------------ 478 (875)
T ss_pred CC----CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCC------------
Confidence 85 79999999999887 46899986 899999999999999998777788899998753211
Q ss_pred CCCCCCCCCCcceeEEEEEecCCcccccccccCCCc-ceEEEeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccc
Q 003808 552 SENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS 630 (794)
Q Consensus 552 ~~~~~~~~~~~~pltiri~e~dg~~~~~~~~~~~~~-~~~~~i~~~~k~~~~r~~k~~~~~~~~~~~~~~d~~~~~~~~~ 630 (794)
.......|++|++|.+...+|.-.. +...++. -..+++.... + ...+
T Consensus 479 --~~~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~l~l~~~~-------q---------------------~f~f 526 (875)
T PRK14015 479 --GQPEKQPLHIPVAIGLLDPDGKELP--LQLEGEPVERVLELTEAE-------Q---------------------TFTF 526 (875)
T ss_pred --CCCCCceEEEEEEEEEEcCCCceee--ccccCCccceEEEEcCCe-------e---------------------EEEE
Confidence 0112346999999998887775210 0011110 0012221000 0 0000
Q ss_pred -cC-CCCeeEEEecCCCceEEEEcccCcHHHHHHHHhhcCChHHHHHHHHHHHcC----------C--CCchhHHHHHHH
Q 003808 631 -SM-ESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL----------P--HLSFNVVNTLNN 696 (794)
Q Consensus 631 -~~-~~~~~wir~D~~~~~l~~v~~~~~~~m~~~qL~~d~dv~aq~eai~~l~~~----------~--~~~~~~~~~L~~ 696 (794)
.. +.|+ +.+|.++.-..++.+++++..+..|+++|.|..+|.||++.|.+. + ..+...+.++..
T Consensus 527 ~~~~~~p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (875)
T PRK14015 527 ENVAERPV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRA 604 (875)
T ss_pred cCCCCCce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 01 3344 799999999999999999999999999999999999999888743 0 113456666777
Q ss_pred HhccC
Q 003808 697 FLSDS 701 (794)
Q Consensus 697 ~l~~~ 701 (794)
+|.|+
T Consensus 605 ~l~~~ 609 (875)
T PRK14015 605 VLLDE 609 (875)
T ss_pred HhcCC
Confidence 77664
No 4
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=5.2e-75 Score=694.77 Aligned_cols=564 Identities=14% Similarity=0.141 Sum_probs=397.9
Q ss_pred CCCeEEEEEEEEEEEeccCc--EEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCe-eeeeeeCCCCcccchhhhhcc
Q 003808 16 NSGAVVRHQKLCLSIDMEKH--QIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE-PTEFEYYPHNHQNVENEKRWR 91 (794)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~--~~~G~v~I~i~~-~~~~~I~L~~~~l~I~~v~v~g~-~~~~~~~~~~~~~~~~~~~~~ 91 (794)
...+++.||+|.|+++.+.. .+.|+++|++.+ .+++.|.||+.+++|++|+|||. ++.+.+.+
T Consensus 11 ~~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~~~~~~~~~~------------- 77 (831)
T TIGR02412 11 ASLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGILDVAPVYDG------------- 77 (831)
T ss_pred HHhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCcccCccccCC-------------
Confidence 35688999999999986655 458888888876 45889999999999999999996 33332221
Q ss_pred ccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCC-CceEEEEEEEEeccCcce
Q 003808 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVGI 170 (794)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~~~y~~~~~~~G~ 170 (794)
..|.++. ++.| .++++ +.|.|.... ..|+++ | . .+.+|
T Consensus 78 ----------------------------~~i~l~~----l~~g--~~~l~--i~~~~~~~~~~~Gl~~--~-~-~~~~g- 116 (831)
T TIGR02412 78 ----------------------------SRIPLPG----LLTG--ENTLR--VEATRAYTNTGEGLHR--F-V-DPVDG- 116 (831)
T ss_pred ----------------------------CEEEccC----CCCC--ceEEE--EEEEEEecCCCceEEE--E-E-eCCCC-
Confidence 1111110 1111 11222 222232222 236665 2 2 23455
Q ss_pred EEEeceEecccccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcceeeEE
Q 003808 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (794)
Q Consensus 171 ~f~~~~~~T~~e~~~Ar~wfPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~iaf 250 (794)
..+++|||||.+||+||||||+|++||+|+|+|++|++|+|+|||++.+.. ..+++++++|..++|||+|++||
T Consensus 117 ---~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~---~~~~~~~~~F~~t~pmstYL~a~ 190 (831)
T TIGR02412 117 ---EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVT---PEPADRRWEFPETPKLSTYLTAV 190 (831)
T ss_pred ---eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCcccccc---ccCCCeEEEecCCCCcccceEEE
Confidence 467899999999999999999999999999999999999999999987554 23467889999999999999999
Q ss_pred EEeeceEeecCC-CCcEEEEEcCCchhH--HHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCcccccccccchhh
Q 003808 251 AVAPFEVLPDHH-QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (794)
Q Consensus 251 avg~f~~~~~~~-~~~v~~~~~p~~~~~--~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~ 327 (794)
+||+|+.++... +.++++|++|+..+. .+++++.+.++|+|||++||+||||+||++|++|++..++|||| |+++
T Consensus 191 ~vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~--Glit 268 (831)
T TIGR02412 191 AAGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENA--GCVT 268 (831)
T ss_pred EEeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccccc--ceee
Confidence 999999987543 578999999997664 56899999999999999999999999999999998877899999 7899
Q ss_pred hccccccCcccchhhh-HHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccee
Q 003808 328 FSSQILYDEKVIDQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (794)
Q Consensus 328 ~~~~lL~~~~~~~~~~-~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~ 406 (794)
|.+.+|+.+...+... ....+|+||||||||||+|||+||+|+|||||||+||+++++++..+.... +......
T Consensus 269 ~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~-~~~f~~~---- 343 (831)
T TIGR02412 269 FAENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDA-WTTFAAQ---- 343 (831)
T ss_pred echhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchH-HHHHHHH----
Confidence 9766776654432222 233589999999999999999999999999999999999999988765432 1111000
Q ss_pred eeccCCCcccCCCCccccC----C-CCcccccccceeeehHHHHHHHHHHhhchHHHHHHHHHHHHhhcCCCCCCCCCHH
Q 003808 407 KADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (794)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~----~-~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~L~~yl~~~~~~~~~~~~st~ 481 (794)
....++..++.++.+++ . ..++...|+.++|.||++|||||+..||++.|+++|+.|+++|++++ ++++
T Consensus 344 --~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~n----at~~ 417 (831)
T TIGR02412 344 --GKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGN----ATLD 417 (831)
T ss_pred --HHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCC----CCHH
Confidence 00001111111122222 1 22445679999999999999999999999999999999999999997 6999
Q ss_pred HHHHHHHHhcCCCcccHHhHHHhhhcCCCccEEEEEEEEeccCcEEE-EEEEeecCCCCCCCCccccCCCCCCCCCCCCC
Q 003808 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVE-LAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (794)
Q Consensus 482 ~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~~~~~~~v~-l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (794)
+|++.+++++ |.|+++||++|++++|+|+++|+..++. +.+. +.+.|. .....
T Consensus 418 Dl~~~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~~~~~--~~~~~~~~~~~---------------------~~~~~ 471 (831)
T TIGR02412 418 DLIDSLAKAS---GRDLSAWSDAWLETAGVNTLTPEITTDG--GVVSALYPESS---------------------GPPRP 471 (831)
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHcCCCCceEEEEEEECC--CeEEEEEEecC---------------------CCCCC
Confidence 9999999887 4689999999999999999999988764 3333 222210 00124
Q ss_pred CcceeEEEEEecCCcccccccccCCCcceEEEeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCeeEEE
Q 003808 561 WPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIR 640 (794)
Q Consensus 561 ~~~pltiri~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir 640 (794)
|++|+++... .++... ...+ ..+.+.+. +.. ... + .......||.
T Consensus 472 ~~ip~~~~~~-~~~~~~-------~~~~--~~~~~~~~----~~~----~~~----------~-------~~~~~~~~v~ 516 (831)
T TIGR02412 472 HRIAIGLYDL-DRDDLR-------RTTL--VPLTISGE----RTA----VPQ----------L-------VGKRAPALVL 516 (831)
T ss_pred eeEEEeeeec-CCCcce-------eeeE--EEEEEecC----cee----ehh----------h-------cCCCCCCEEE
Confidence 7777775321 111110 0111 12222110 000 000 0 0012347999
Q ss_pred ecCCCceEEEEcccCcHHHH---HHHHhhcCChHHHH---HHHHHHHcCCCCchhH-HHHHHHHhccCcchhHHHHHHHH
Q 003808 641 ADPEMEYLAEIHFNQPVQMW---INQLEKDGDVVAQA---QAIAALEALPHLSFNV-VNTLNNFLSDSKAFWRVRIEAAY 713 (794)
Q Consensus 641 ~D~~~~~l~~v~~~~~~~m~---~~qL~~d~dv~aq~---eai~~l~~~~~~~~~~-~~~L~~~l~~~~~f~~vR~~Aa~ 713 (794)
+|.+..++||| ++++.+| +.+|....+.+.|. .++.+|++....+... ...+.+.|.+|.. |-|...+..
T Consensus 517 ~N~~~~gyyrv--~yd~~~~~~l~~~l~~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~-~~v~~~~~~ 593 (831)
T TIGR02412 517 LNDDDLTYAKV--RLDPTSFDTVLAALSKLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETD-YAVVQQVLS 593 (831)
T ss_pred EeCCCcEEEEE--ECCHHHHHHHHHHhhhCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCc-hHHHHHHHH
Confidence 99999999999 4466666 55665555565544 6677777765554432 3335578887764 667766766
Q ss_pred HHH
Q 003808 714 ALA 716 (794)
Q Consensus 714 aL~ 716 (794)
.|.
T Consensus 594 ~l~ 596 (831)
T TIGR02412 594 QLL 596 (831)
T ss_pred HHH
Confidence 666
No 5
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=1.5e-73 Score=671.96 Aligned_cols=560 Identities=16% Similarity=0.201 Sum_probs=417.1
Q ss_pred CCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcC-CcceEEEeccCceeeEEEEcCeeee---eeeCCCCcccchhhhhcc
Q 003808 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE---FEYYPHNHQNVENEKRWR 91 (794)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~~~~I~L~~~~l~I~~v~v~g~~~~---~~~~~~~~~~~~~~~~~~ 91 (794)
.++|.+.||+|+|+++++...++|.++|++.+. +.+.|.||+++|+|.+|.+||+.+. |.+.+
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~------------- 70 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDD------------- 70 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcC-------------
Confidence 468999999999999999999999999998753 4668999999999999999997643 33221
Q ss_pred ccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCCCceEEEEEEEEeccCcceE
Q 003808 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIH 171 (794)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~y~~~~~~~G~~ 171 (794)
..|+|... | +.++++ +.|.+.+.. +.+..|++
T Consensus 71 --------------------------~~L~I~~~-~--------~~~~l~--i~~~~~p~~-----------n~~l~GlY 102 (863)
T TIGR02414 71 --------------------------ETLTIASV-P--------ESFTLE--IETEIHPEE-----------NTSLEGLY 102 (863)
T ss_pred --------------------------CEEEEeeC-C--------ccEEEE--EEEEeeccc-----------CCCCeEEE
Confidence 12555311 0 012222 222221111 11122444
Q ss_pred EEeceEecccccCCcceEEeeCCCCCCeeEEEEEEEEeCC-e-EEEEcCcccceeeccCCCCceEEEEecCCCCcceeeE
Q 003808 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (794)
Q Consensus 172 f~~~~~~T~~e~~~Ar~wfPC~D~p~~katf~l~i~~p~~-~-~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~ia 249 (794)
+.+.+++|||||++||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++|
T Consensus 103 ~s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~--~~~g~~~~~f~~t~pmptYLfA 180 (863)
T TIGR02414 103 KSGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGE--LPDGRHWAEWEDPFPKPSYLFA 180 (863)
T ss_pred EeCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCcccccee--cCCCeEEEEEeCCCCcChhHhe
Confidence 4445689999999999999999999999999999999986 6 6789999876543 2467889999999999999999
Q ss_pred EEEeeceEeecCC------CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCccccccccc
Q 003808 250 LAVAPFEVLPDHH------QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (794)
Q Consensus 250 favg~f~~~~~~~------~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (794)
|+||+|+++++.. +.++++|++|+..+.+.++++.++++|+|||++||.+|||+||++|++|++..++||||
T Consensus 181 ~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~-- 258 (863)
T TIGR02414 181 LVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENK-- 258 (863)
T ss_pred EEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCcccccc--
Confidence 9999999987531 35689999999999999999999999999999999999999999999998878899999
Q ss_pred chhhh-ccccccCcccc-hhhh-HHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 003808 324 AMGIF-SSQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (794)
Q Consensus 324 gl~~~-~~~lL~~~~~~-~~~~-~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~ 400 (794)
||++| +..+|.++... +... ....+|+||+|||||||+|||+||+++|||||||+|++.++.....+....++....
T Consensus 259 GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~ 338 (863)
T TIGR02414 259 GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVR 338 (863)
T ss_pred ceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 78999 55677777542 2222 234589999999999999999999999999999999998887776554332222111
Q ss_pred hhcceeeeccCCCcccCCCCccccCCC---CcccccccceeeehHHHHHHHHHHhhchHHHHHHHHHHHHhhcCCCCCCC
Q 003808 401 ANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (794)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~L~~yl~~~~~~~~~~~ 477 (794)
..... .+..++.+..+++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 339 ~lr~~-------~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~---- 407 (863)
T TIGR02414 339 LLRAH-------QFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQA---- 407 (863)
T ss_pred HHHhh-------hhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC----
Confidence 11110 111111122233321 2445678999999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhcCCCcccHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeecCCCCCCCCccccCCCCCCCCCC
Q 003808 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (794)
Q Consensus 478 ~st~~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (794)
+++++|.+.+++++ +.|+.+|+ +|++|+|+|+|+|+.+|+.+++.++|+++|.+...+ ....
T Consensus 408 at~~Df~~ale~as---g~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~--------------~~~~ 469 (863)
T TIGR02414 408 VTCEDFVAAMEDAS---GRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTP--------------GQTE 469 (863)
T ss_pred CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCC--------------CCCc
Confidence 79999999999887 46899985 899999999999999998777778888888653210 0112
Q ss_pred CCCCcceeEEEEEecCCcccccccccCCCc--ceEEEeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccc-c-CC
Q 003808 558 DIGWPGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS-S-ME 633 (794)
Q Consensus 558 ~~~~~~pltiri~e~dg~~~~~~~~~~~~~--~~~~~i~~~~k~~~~r~~k~~~~~~~~~~~~~~d~~~~~~~~~-~-~~ 633 (794)
...|.+|+.|.+...+|.-.- ....++. -..+++... .....+ . .+
T Consensus 470 ~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~~l~l~~~----------------------------~~~f~f~~~~~ 519 (863)
T TIGR02414 470 KKPLHIPIAVGLLGPNGRKLM--LSLDGERDTTRVLELTEA----------------------------EQTFVFEGIAE 519 (863)
T ss_pred CCceEEEEEEEEEeCCCCEee--ecccCCCCcceEEEEccC----------------------------EEEEEEcCCCC
Confidence 347999999999988885110 0001110 011222100 000000 1 12
Q ss_pred CCeeEEEecCCCceEEEEcccCcHHHHHHHHhhcCChHHHHHHHHHHHcC------------C--CCchhHHHHHHHHhc
Q 003808 634 SPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL------------P--HLSFNVVNTLNNFLS 699 (794)
Q Consensus 634 ~~~~wir~D~~~~~l~~v~~~~~~~m~~~qL~~d~dv~aq~eai~~l~~~------------~--~~~~~~~~~L~~~l~ 699 (794)
.|+ +.++.+|.-..++.+++++..+..+|++|.|..+|.||++.|++. + ..+...+.++...|.
T Consensus 520 ~p~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 597 (863)
T TIGR02414 520 KPV--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLN 597 (863)
T ss_pred CCe--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhc
Confidence 344 899999999999999999999999999999999999999888732 0 124456666777776
Q ss_pred cC
Q 003808 700 DS 701 (794)
Q Consensus 700 ~~ 701 (794)
|+
T Consensus 598 ~~ 599 (863)
T TIGR02414 598 DP 599 (863)
T ss_pred CC
Confidence 64
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=8.3e-68 Score=608.32 Aligned_cols=435 Identities=19% Similarity=0.272 Sum_probs=328.5
Q ss_pred CCC-CCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhc
Q 003808 14 VEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRW 90 (794)
Q Consensus 14 ~~~-~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~~~~l~I~~v~v~g~~~~~~~~~~~~~~~~~~~~~ 90 (794)
.+| ..++|.||+|+|++|+++..|.|+|+|++.+ . .++.|.||+++|+|++|.++|.++.|+.......
T Consensus 5 ~sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~~~-------- 76 (601)
T TIGR02411 5 LSNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPADFAIGERKEP-------- 76 (601)
T ss_pred ccCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccceEeccccCC--------
Confidence 455 5699999999999999999999999999987 3 3578999999999999999998887765421000
Q ss_pred cccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCCCceEEEEEEEEe--ccCc
Q 003808 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE--KVEV 168 (794)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~y~~~--~~~~ 168 (794)
....|+|.++.+ +..+. .+++ .+.|+|.++. .|+ +|+. ...+
T Consensus 77 -------------------------~g~~L~I~l~~~---l~~g~-~~~l--~I~Y~~~~~~-~gl----~~~~~~~t~g 120 (601)
T TIGR02411 77 -------------------------LGSPLTISLPIA---TSKNK-ELVL--NISFSTTPKC-TAL----QWLTPEQTSG 120 (601)
T ss_pred -------------------------CCCeEEEEeCCc---cCCCc-eEEE--EEEEeecCCC-cee----EEecccccCC
Confidence 112588876432 21111 1233 3567766533 233 2221 1112
Q ss_pred ceEEEeceEecccccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcceee
Q 003808 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248 (794)
Q Consensus 169 G~~f~~~~~~T~~e~~~Ar~wfPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~i 248 (794)
| +.++++|||||.+||+||||+|+|+.||||+++|++| ++|++||.++.+. .++..+++|..++|||+|++
T Consensus 121 ~---~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~----~~~~~~~~F~~t~pmptYLi 191 (601)
T TIGR02411 121 K---KHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET----SNDPGKYLFKQKVPIPAYLI 191 (601)
T ss_pred C---CCCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc----cCCCceEEEEeCCCcchhhh
Confidence 2 2478999999999999999999999999999999999 9999988776543 23456889999999999999
Q ss_pred EEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHhcCCCCCCCCccEEEEC-CCCcccccccccchh
Q 003808 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMG 326 (794)
Q Consensus 249 afavg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~V~vp-~~~~~~~~~~gagl~ 326 (794)
||+||+|+..+. +..+++|+.|+..+.+++.+. .+.++|+++|+++| ||||+|||+|++| ++..++|||+ |++
T Consensus 192 a~avG~~~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~--~lt 266 (601)
T TIGR02411 192 ALASGDLASAPI--GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENP--NLT 266 (601)
T ss_pred eeeeccceeccc--CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCcccccccccc--cce
Confidence 999999997643 567899999999888888888 89999999998865 9999999999884 5667899999 455
Q ss_pred hhccccccCcccchhhhHHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHHH---Hhhc
Q 003808 327 IFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY---KANC 403 (794)
Q Consensus 327 ~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~---~~~~ 403 (794)
+.+..+|.+.. ....+||||||||||||+||++||+|+|||||||+|++.+++++++|.....+... ....
T Consensus 267 f~~~~ll~~d~------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~ 340 (601)
T TIGR02411 267 FATPTLIAGDR------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQ 340 (601)
T ss_pred eeccccccCCh------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHH
Confidence 44677775532 12358999999999999999999999999999999999999999999876433321 1111
Q ss_pred ceeeeccCCCcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhhc-hHHHHHHHHHHHHhhcCCCCCCCCCHHH
Q 003808 404 AVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKE 482 (794)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~~~F~~~L~~yl~~~~~~~~~~~~st~~ 482 (794)
..+.. .....++... ..++...++...|+.+.|.||+++|||||..|| ++.|+++|+.|++++++++ +++++
T Consensus 341 ~~~~~-~~~~~~~~~~--~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s----~~t~d 413 (601)
T TIGR02411 341 ESVKT-LGEDPEYTKL--VVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKS----LDTYQ 413 (601)
T ss_pred HHHHh-hcCCCCCCcc--cccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCC----CCHHH
Confidence 00000 0000111110 011212245678999999999999999999999 9999999999999999996 79999
Q ss_pred HHHHHHHhcCC--CcccHHhH-HHhhhcCCCccEEEEEEE
Q 003808 483 FRHFANKVGNL--ERPFLKEF-FPRWVGTCGCPVLRMGFS 519 (794)
Q Consensus 483 f~~~~e~~~~~--~~~dl~~f-~~~Wv~~~G~P~l~v~~~ 519 (794)
|.+.+.+.... .+.+++.+ |++|++++|+|.+.+.+.
T Consensus 414 f~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 414 FKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 99877654211 12457766 999999999999876543
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-66 Score=614.19 Aligned_cols=465 Identities=22% Similarity=0.312 Sum_probs=354.2
Q ss_pred EEEEEEEEEeccCcEEEEEEEEEEEc--CC-cceEEEeccCceeeEEEEcCeeeee--eeCCCCcccchhhhhccccCCC
Q 003808 22 RHQKLCLSIDMEKHQIYGYTELEIAV--PD-IGIVGLHAENLGIESVLVDGEPTEF--EYYPHNHQNVENEKRWRSMVSS 96 (794)
Q Consensus 22 ~hy~l~L~id~~~~~~~G~v~I~i~~--~~-~~~I~L~~~~l~I~~v~v~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 96 (794)
.|..|++++++++..|+|.++|++.. .+ ...|+||+++|+|.+|.|||.+.+. .+...
T Consensus 25 ~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~~~~~~~~----------------- 87 (859)
T COG0308 25 YDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTAWYRLDGD----------------- 87 (859)
T ss_pred cceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccccccccCc-----------------
Confidence 44444445555568999999999975 33 3349999999999999999986542 22211
Q ss_pred CCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccC-C-CceEEEEEEEEeccCcceEEEe
Q 003808 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK-Q-NVKLVRIDYWVEKVEVGIHFDG 174 (794)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~-~-~~~~~~~~y~~~~~~~G~~f~~ 174 (794)
.+.|....+. ...+....++.+.+.+.+... . -.|+|+..+ + + .
T Consensus 88 ----------------------~~~i~~~~~~--~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~----~--~----~ 133 (859)
T COG0308 88 ----------------------ALTITVAPPI--PERSERPFTLAITYEFTGPVSNDTLEGLYRSGY----G--G----K 133 (859)
T ss_pred ----------------------cceeeecccc--ccccCCCccEEEEEEecccccCccccceeecCC----C--C----C
Confidence 0111110000 000000011222223333222 1 124443321 1 1 4
Q ss_pred ceEecccccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcceeeEEEEee
Q 003808 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (794)
Q Consensus 175 ~~~~T~~e~~~Ar~wfPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~iafavg~ 254 (794)
.+++||||+.+||+||||+|+|+.|+||+++|++++++++||||+++.... ..+++++++|..++|||+|++|+++|+
T Consensus 134 ~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~--~~~g~~~~~f~~~~~mptYL~al~~G~ 211 (859)
T COG0308 134 PYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGT--LVDGRKIVKFEDTPPMPTYLFALVAGD 211 (859)
T ss_pred eeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCcccccc--ccCCcEEEEEcCCCCcchHhhheeeec
Confidence 679999999999999999999999999999999999999999999987654 234689999999999999999999999
Q ss_pred ceEeecCC-----CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCcccccccccchhhh-
Q 003808 255 FEVLPDHH-----QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF- 328 (794)
Q Consensus 255 f~~~~~~~-----~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~- 328 (794)
|+++++.. ..++.+|+.|+....++++++.+.++++|||++||.+||+++ ++|+||++..++|||| |+++|
T Consensus 212 ~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~--Gl~tf~ 288 (859)
T COG0308 212 LEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENW--GLVTFR 288 (859)
T ss_pred ceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcccccc--ceeEEe
Confidence 99887765 578999999999999999999999999999999999999999 9999999999999999 67888
Q ss_pred ccccccCcc-cchhhhH-HHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccee
Q 003808 329 SSQILYDEK-VIDQAID-TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (794)
Q Consensus 329 ~~~lL~~~~-~~~~~~~-~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~ 406 (794)
...+|.++. ..+..+. ...+|+||||||||||+||++||+|+|||||||+|++..+.+.+.|....++..+...
T Consensus 289 ~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~---- 364 (859)
T COG0308 289 EKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTL---- 364 (859)
T ss_pred eeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHH----
Confidence 455777754 3444443 3348999999999999999999999999999999999999999988332222222211
Q ss_pred eeccCCCcccCCCCccccC-----CCCcccccccceeeehHHHHHHHHHHhhchHHHHHHHHHHHHhhcCCCCCCCCCHH
Q 003808 407 KADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (794)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~-----~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~L~~yl~~~~~~~~~~~~st~ 481 (794)
....++..++.+..+++ .+.++..+||.++|.||++|+|||+..+|++.|+++|+.|+++|.+++ .+++
T Consensus 365 --~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~----~~~~ 438 (859)
T COG0308 365 --RTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN----ATTM 438 (859)
T ss_pred --hhhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC----CCHH
Confidence 11112233333333333 246778899999999999999999999999999999999999999997 6899
Q ss_pred HHHHHHHHhcCCCcccHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeecCCCCCCCCccccCCCCCCCCCCCCCC
Q 003808 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (794)
Q Consensus 482 ~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (794)
+|++..+.++ |+|+.++|++|+.++|+|++.|+..++. .+.|+|+|+.... ......|
T Consensus 439 Dl~~a~~~~s---g~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----------------~~~~~~~ 496 (859)
T COG0308 439 DLWKALEDAS---GKDLSAFFESWLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----------------QEEKRPW 496 (859)
T ss_pred HHHHHHHHHh---CCcHHHHHHHHHhCCCCCceeeeeeccc---cEEEEEEEeccCC----------------CccCcee
Confidence 9999999987 4799999999999999999999998764 6678998875421 1123479
Q ss_pred cceeEEEEEecCC
Q 003808 562 PGMMSIRVHELDG 574 (794)
Q Consensus 562 ~~pltiri~e~dg 574 (794)
++|+.+...+.+|
T Consensus 497 ~iPl~~~~~~~~~ 509 (859)
T COG0308 497 PIPLAIKLLDGGG 509 (859)
T ss_pred eeccEEEecCCCC
Confidence 9999999887665
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=6.2e-59 Score=519.03 Aligned_cols=372 Identities=23% Similarity=0.349 Sum_probs=280.9
Q ss_pred CCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeee-------eeeCCCCcccchh
Q 003808 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE-------FEYYPHNHQNVEN 86 (794)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~~~~l~I~~v~v~g~~~~-------~~~~~~~~~~~~~ 86 (794)
....+.|.||+|.|++|++...|+|.|+|++.+ .+++.|.||+.+++|.+|.++|.... +.++..
T Consensus 2 Lp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~~------- 74 (390)
T PF01433_consen 2 LPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDDE------- 74 (390)
T ss_dssp --TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEECC-------
T ss_pred CCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeeccc-------
Confidence 346899999999999999999999999999997 56899999999999999999987654 222211
Q ss_pred hhhccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCC-CceEEEEEEEEec
Q 003808 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEK 165 (794)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~~~y~~~~ 165 (794)
...|.|.++.+ +..+. .++++ +.|+|.++. ..|++++.|....
T Consensus 75 ------------------------------~~~l~I~l~~~---l~~g~-~~~L~--I~y~g~~~~~~~G~~~~~y~~~~ 118 (390)
T PF01433_consen 75 ------------------------------NEKLTITLPKP---LPPGS-NYTLR--IEYSGKISDDSSGLYRSSYTDQT 118 (390)
T ss_dssp ------------------------------BTEEEEEEEEE---CSTTE-EEEEE--EEEEEECBSSSSEEEEEEEE-GT
T ss_pred ------------------------------cceeehhhhhh---cccCc-EEEEE--EEEeecccccccccccceeeccc
Confidence 12367765432 22221 13444 678887776 4689998887511
Q ss_pred cCcceEEEeceEecccccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcc
Q 003808 166 VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (794)
Q Consensus 166 ~~~G~~f~~~~~~T~~e~~~Ar~wfPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~ 245 (794)
.|. ..++++|++||.+||+||||+|+|++||+|+++|++|++++|+|||+++++... ++++++++|..++|||+
T Consensus 119 --~~~--~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~--~~~~~~~~f~~t~p~~~ 192 (390)
T PF01433_consen 119 --NGN--TRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESN--DDGWKTTTFETTPPMPT 192 (390)
T ss_dssp --SSS--ETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEE--TTTEEEEEEEEEEEEEG
T ss_pred --ccc--cCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccc--cccceeEeeecccccCc
Confidence 121 267899999999999999999999999999999999999999999999887754 35799999999999999
Q ss_pred eeeEEEEeeceEeecCCC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCccccccccc
Q 003808 246 KWITLAVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (794)
Q Consensus 246 y~iafavg~f~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (794)
|++||+||+|+.++.... .++++|++|+..+.++.+++.+.+++++|+++||++|||+|+++|++|++..++|+++
T Consensus 193 yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~-- 270 (390)
T PF01433_consen 193 YLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW-- 270 (390)
T ss_dssp GG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T--
T ss_pred hhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEecccccccccc--
Confidence 999999999999876553 5899999999999999999999999999999999999999999999998777899999
Q ss_pred chhhh-ccccccCcccchhh--hHHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHH-H
Q 003808 324 AMGIF-SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR-Y 399 (794)
Q Consensus 324 gl~~~-~~~lL~~~~~~~~~--~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~-~ 399 (794)
|++++ +..++++++..... .....+||||+|||||||+||++||+|+||+||||+|++.+++++.+|...+.... .
T Consensus 271 g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~ 350 (390)
T PF01433_consen 271 GLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLV 350 (390)
T ss_dssp TEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHH
T ss_pred ccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhh
Confidence 67777 56788887654432 23455899999999999999999999999999999999999999999955432111 1
Q ss_pred HhhcceeeeccC-CCcccCCCCccccC-CCCcccccccceeeehH
Q 003808 400 KANCAVCKADDS-GATALSSSASCKDL-YGTQCIGIFGKIRSCKS 442 (794)
Q Consensus 400 ~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~~~~~~~f~~i~Y~Kg 442 (794)
......+..|.. ...++. .++ ...++..+|+.+.|.||
T Consensus 351 ~~~~~~~~~d~~~~~~pl~-----~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 351 QEMQRALREDALPNSHPLS-----SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHHHHHHHTSTTCCCSS-----SSSSSESCGGGGSSHHHHHHH
T ss_pred hhHHHHHHHhhcCCCcceE-----eCCCCCCChHHhcCccccCCC
Confidence 111111111211 111221 122 23556778999999998
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-52 Score=441.08 Aligned_cols=440 Identities=19% Similarity=0.260 Sum_probs=326.6
Q ss_pred CCCCCCCCCcCCC-CCC-CCeEEEEEEEEEEEeccCcEEEEEEEEEEEcC-CcceEEEeccCceeeEEEEcCeeeeeeeC
Q 003808 1 MAKPRKPKNEETK-VEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTEFEYY 77 (794)
Q Consensus 1 ~~~~~~~~~~~~~-~~~-~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~~~~I~L~~~~l~I~~v~v~g~~~~~~~~ 77 (794)
||-+| ||. .+| ..+.+.|+.|++.+|++...++|+|.+++.+. +...|.||.+++.|.+|++||.+.+|...
T Consensus 1 m~~~~-----Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRR-----DPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIG 75 (613)
T ss_pred CCCCC-----CcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccC
Confidence 66666 553 333 66889999999999999999999999999863 33359999999999999999988776644
Q ss_pred CCCcccchhhhhccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCCCceEE
Q 003808 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLV 157 (794)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 157 (794)
.. +.. .+..-.+++.. + ..+. .....+
T Consensus 76 ~~-~~~------------------------------~g~~~~~~l~~--~--~~~a------------------~~~~~l 102 (613)
T KOG1047|consen 76 FR-QPF------------------------------LGSGQKLVLPA--P--SSKA------------------GERLQL 102 (613)
T ss_pred cc-cCC------------------------------CCCceEEEecc--c--cccc------------------cCceEE
Confidence 21 000 01111133311 1 1110 111234
Q ss_pred EEEEEEeccCcceEE---------EeceEecccccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccC
Q 003808 158 RIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKD 228 (794)
Q Consensus 158 ~~~y~~~~~~~G~~f---------~~~~~~T~~e~~~Ar~wfPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~ 228 (794)
.|.|......+|+++ +.+|++||||...||..|||+|.|+.|.||+..|.+|.++++++++...++.. .
T Consensus 103 ~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~~--~ 180 (613)
T KOG1047|consen 103 LIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEKP--G 180 (613)
T ss_pred EEEEeccCCcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccCC--C
Confidence 445543333344444 24799999999999999999999999999999999999999999998755442 3
Q ss_pred CCCceEEEEecCCCCcceeeEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHhcCCCCCCCCccE
Q 003808 229 DPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQ 307 (794)
Q Consensus 229 ~~~~~~~~f~~t~p~s~y~iafavg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~ 307 (794)
+.++.+++|++..|+++|++||++|+.+..+. +..-+||+.|...+..+..+. .+.++|.--|+.+| ||+|..||+
T Consensus 181 ~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI--gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDl 257 (613)
T KOG1047|consen 181 SNGRAIFRFKQEVPIPSYLIAIAVGDLESREI--GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDL 257 (613)
T ss_pred CCCcceEEEEeccCchhhhHHHhhcccccccc--CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceE
Confidence 45688999999999999999999999876543 556789999999998888887 89999999999999 999999999
Q ss_pred EEECC-CCcccccccccchhhhccccccCcccchhhhHHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHH
Q 003808 308 VFLAP-EMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIK 386 (794)
Q Consensus 308 V~vp~-~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~ 386 (794)
+++|+ +..++|+|. .|+.....||-..+. ...+|||||||-||||+||..+|.+.||||||++|++..++.
T Consensus 258 lvlPpSFP~gGMENP--cltF~TpTllaGDrs------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g 329 (613)
T KOG1047|consen 258 LVLPPSFPFGGMENP--CLTFVTPTLLAGDRS------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVG 329 (613)
T ss_pred EEecCCCCcccccCc--ceeeecchhhcCCcc------hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhh
Confidence 99975 556888887 344446777765442 245799999999999999999999999999999999999999
Q ss_pred HhcCchhHHHHHHHhhcceeee-ccCCCcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhhc-hHHHHHHHHH
Q 003808 387 KFLGNNEARYRRYKANCAVCKA-DDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQN 464 (794)
Q Consensus 387 ~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~~~F~~~L~~ 464 (794)
.++|.....+.....+...-.. +.-+. .........++.+.++...|+.+.|.||..+|+.||+.+| ++.|...||.
T Consensus 330 ~~~g~~~~~f~a~~gw~~L~~~~d~~g~-~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~ 408 (613)
T KOG1047|consen 330 RLYGEAYRQFEALIGWRELRPSMDLFGE-TSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRA 408 (613)
T ss_pred hhcchhHHHHHHhcChhhhhhHHHhcCC-CcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHH
Confidence 9999886544432222221000 11110 0000011123333456678999999999999999999999 5789999999
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHH-hcCCCccc-HHh-HHHhhhcCCCccEEEE
Q 003808 465 IISRAQGASPVRTLSTKEFRHFANK-VGNLERPF-LKE-FFPRWVGTCGCPVLRM 516 (794)
Q Consensus 465 yl~~~~~~~~~~~~st~~f~~~~e~-~~~~~~~d-l~~-f~~~Wv~~~G~P~l~v 516 (794)
|++++++++ +.+++|....-+ ..+...++ ++. -|+.|++++|.|...-
T Consensus 409 Yv~kfa~ks----I~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p 459 (613)
T KOG1047|consen 409 YVHKFAFKS----ILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKP 459 (613)
T ss_pred HHHHhccce----ecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCC
Confidence 999999984 899999876644 33211122 233 4899999999997544
No 10
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.92 E-value=6.7e-10 Score=102.87 Aligned_cols=102 Identities=21% Similarity=0.342 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhcceeeeccCCCcccCCCCccccC
Q 003808 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDL 425 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (794)
..+++||++|+|++..+........|++||+|+|++...-. .. ..... ..+... ...++ .++
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~~------~~-~~~~~---~~~~~~--~~~~~------~~l 87 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIED------EF-DEDLK---QAIESG--SLPPL------EPL 87 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCccc------hh-HHHHH---HHHHcC--CCCCh------HHH
Confidence 46899999999999999877888899999999999843110 00 11110 000000 11111 111
Q ss_pred CC-CcccccccceeeehHHHHHHHHHHhhchHHHHHHHHHH
Q 003808 426 YG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI 465 (794)
Q Consensus 426 ~~-~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~L~~y 465 (794)
.. ......+....|.+|.+++++|+...|++.|.+.|+.|
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 88 NSSFDFSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10 00123445567999999999999999999999999875
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.60 E-value=1.2e-06 Score=95.44 Aligned_cols=225 Identities=14% Similarity=0.144 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccCcccc-hhh-hHH-HHHHHHH
Q 003808 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVI-DQA-IDT-SIKLSFA 352 (794)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~-~~~-~~~-~~~iaHE 352 (794)
..+...+.+.++++-=-+.|| +-||.+|.+++--. -..++||.-. ++.|.++.... ++. +.. ..+++||
T Consensus 182 d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s------~q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHE 254 (558)
T COG3975 182 DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLS------DQIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHE 254 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEec------CCCCCCceeccccccccccccccchhHHHHHHHHHHHH
Confidence 344455666677776677888 68999987765321 1223366666 55566655322 221 222 5689999
Q ss_pred HHHHhhccccCCCCC-----------CchHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHhhcceeeeccCCCcccCCC
Q 003808 353 LARQWFGVYITPELP-----------NDEWLLDGLAGFLTDSFIKKF--LGNNEARYRRYKANCAVCKADDSGATALSSS 419 (794)
Q Consensus 353 lAHQWfG~~Vt~~~w-----------~d~WL~EGfA~y~~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (794)
..|-|=+-.+-|..- .-+|+.|||+.|...++..+. .....+.-..-+.+..+.........++..
T Consensus 255 yfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laE- 333 (558)
T COG3975 255 YFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAE- 333 (558)
T ss_pred HHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccc-
Confidence 999998876666432 458999999999988775432 111222111112222222111000111111
Q ss_pred Ccccc----CCCCccccccccee--eehHHHHHHHHHHhh-----chHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH
Q 003808 420 ASCKD----LYGTQCIGIFGKIR--SCKSVAILQMLEKQM-----GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFAN 488 (794)
Q Consensus 420 ~~~~~----~~~~~~~~~f~~i~--Y~Kg~~vl~mL~~~l-----G~~~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~e 488 (794)
++.+ .+..+.. .-..+. |+||++|--+|+-.| |+..+..+++.+.+.+... ++.++.++++.+++
T Consensus 334 -sS~~awik~yr~d~n-s~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~--~~~~t~e~v~av~~ 409 (558)
T COG3975 334 -SSFDAWIKYYRPDEN-SPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRA--ERGYTPEDVQAVLE 409 (558)
T ss_pred -cccchhHHhhccccc-ccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcC--ccCCCHHHHHHHHH
Confidence 1100 0111100 001122 889999999998887 5678999999999888763 34579999999999
Q ss_pred HhcCCCcccHHhHHHhhhcCCCccEEEE
Q 003808 489 KVGNLERPFLKEFFPRWVGTCGCPVLRM 516 (794)
Q Consensus 489 ~~~~~~~~dl~~f~~~Wv~~~G~P~l~v 516 (794)
.+.| .|+..||++.+++.--|.+.-
T Consensus 410 ~~tg---~dl~~f~~~~i~~~~~~~l~~ 434 (558)
T COG3975 410 NVTG---LDLATFFDEYIEGTEPPPLNP 434 (558)
T ss_pred hhcc---ccHHHHHHHHhhcCCCCChhh
Confidence 9874 689999999999988776653
No 12
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=95.95 E-value=0.047 Score=59.19 Aligned_cols=140 Identities=19% Similarity=0.303 Sum_probs=89.8
Q ss_pred EEEecCCCceEEEEcccCcHHHH---HHHHhhcC-ChHHHH---HHHHHHHcCCCCchhHHHHHHHHh-ccCcchhHHHH
Q 003808 638 WIRADPEMEYLAEIHFNQPVQMW---INQLEKDG-DVVAQA---QAIAALEALPHLSFNVVNTLNNFL-SDSKAFWRVRI 709 (794)
Q Consensus 638 wir~D~~~~~l~~v~~~~~~~m~---~~qL~~d~-dv~aq~---eai~~l~~~~~~~~~~~~~L~~~l-~~~~~f~~vR~ 709 (794)
||.+|++..++|||.+ ++.+| +.+|+.++ +.+.+. ..+.+|++....+....--|...+ .+|.. |.|..
T Consensus 1 wi~~N~~~~GyyRV~Y--d~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~-~~vw~ 77 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNY--DEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETD-YVVWS 77 (324)
T ss_dssp EEEESGGGSSSSEEEE--CTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--S-HHHHH
T ss_pred CEEEeCCceEEEEEeC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCc-hHHHH
Confidence 9999999999999966 55555 77887777 666544 677788877767766556677777 77765 88888
Q ss_pred HHHHHHHhhccc-c--ccccc--h-----HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCh
Q 003808 710 EAAYALANTASE-E--TDWAG--L-----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP 779 (794)
Q Consensus 710 ~Aa~aL~~~~~~-~--~~~~g--~-----~~l~~~f~~~~~~~~~~i~~~n~f~~~~~y~~~~~i~~a~~~~r~~~~~~p 779 (794)
.+...|..+... . ..... + ..+...+++.-+++ +++ .+...-.++..|...+| .+..|-
T Consensus 78 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-----~~~--~~~~~~~lr~~~~~~a~----~~~~~~ 146 (324)
T PF11838_consen 78 TALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDP-----RPG--EDHNDRLLRALLLSLAC----GDPECV 146 (324)
T ss_dssp HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSS-----S----SCHHHHHHHHHHHHHHH----T-HHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCC-----ccc--ccHHHHHHHHHHHHHhc----cchhHH
Confidence 998888877632 1 11111 1 12233333322222 122 67888888888878877 566688
Q ss_pred HHHHHHHHHhhh
Q 003808 780 REAVEFVLQLLK 791 (794)
Q Consensus 780 ~~~~~fl~~~l~ 791 (794)
.++++.+...+.
T Consensus 147 ~~a~~~~~~~~~ 158 (324)
T PF11838_consen 147 AEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888887777665
No 13
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.60 E-value=0.11 Score=44.19 Aligned_cols=71 Identities=27% Similarity=0.278 Sum_probs=56.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHh
Q 003808 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (794)
Q Consensus 659 m~~~qL~~d~dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f~~ 737 (794)
..+..|..|+|..-|..|++.|++.. +..+...|.+.+.|+ .+.||.+|+.+|+++.++ ..++.|.+.+++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~----~~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEAIPALIELLKDE--DPMVRRAAARALGRIGDP----EAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHH----HTHHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCH----HHHHHHHHHHcC
Confidence 35677888999999999999999874 456778899999775 589999999999998643 256667776653
No 14
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.14 E-value=0.016 Score=53.11 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhccccCCCCCC--chHHHHHHHHHHHHHHH
Q 003808 347 IKLSFALARQWFGVYITPELPN--DEWLLDGLAGFLTDSFI 385 (794)
Q Consensus 347 ~~iaHElAHQWfG~~Vt~~~w~--d~WL~EGfA~y~~~~~~ 385 (794)
.+++||-+||=.-|.=-...-. =.||.||||+|++..-+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 3699999999876542222111 27999999999986544
No 15
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=94.96 E-value=0.19 Score=54.31 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHh--hccccCCC--CCCchHHHHHHHHHHHHHHHHHhc-Cchh---HHHHHHHhhcceeeeccCCCcccC
Q 003808 346 SIKLSFALARQW--FGVYITPE--LPNDEWLLDGLAGFLTDSFIKKFL-GNNE---ARYRRYKANCAVCKADDSGATALS 417 (794)
Q Consensus 346 ~~~iaHElAHQW--fG~~Vt~~--~w~d~WL~EGfA~y~~~~~~~~~~-G~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 417 (794)
..+||||+-|+- --+.|... .-.|+|||||+|.-++.++-.+.. |-+. .|+..+.. ..... ..
T Consensus 140 ~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~-------~~~~~--~~ 210 (366)
T PF10460_consen 140 YSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNN-------YTSGN--YN 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhh-------ccccC--CC
Confidence 347999999974 33344443 346999999999999988765542 1111 12222211 00000 00
Q ss_pred CCCccccCCCCcccccccceeeehHHHHHHHHHHhhchHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcCCCccc
Q 003808 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPF 497 (794)
Q Consensus 418 ~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~e~~~~~~~~d 497 (794)
+. ...... . .-.-..|..+.+++.-|.+..|.+.+++.|. +.... -+.+-+.++.+.++. +..
T Consensus 211 ~~--l~~w~~--~--g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~~~~t-----ds~avl~aa~~~~~~--~~s 273 (366)
T PF10460_consen 211 CS--LTAWSS--F--GDSLASYSSSYSFGAYLYRQYGGDFYKKLLT----NSSST-----DSEAVLDAAIKQAGP--GNS 273 (366)
T ss_pred cc--eeecCC--C--ccccccchhHHHHHHHHHHHcChHHHHHHHh----cCCCC-----cHHHHHHHHHHhhcC--CCC
Confidence 00 000100 0 0112458999999999999999888766555 22211 122334444444542 457
Q ss_pred HHhHHHhhhcCC
Q 003808 498 LKEFFPRWVGTC 509 (794)
Q Consensus 498 l~~f~~~Wv~~~ 509 (794)
+.++|.+|.-.-
T Consensus 274 f~~~l~~w~~A~ 285 (366)
T PF10460_consen 274 FGELLRRWGVAL 285 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999999998766
No 16
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=94.59 E-value=0.015 Score=52.72 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhccccCC-----------CCCCchHHHHHHHHHHHHHHHHHh
Q 003808 346 SIKLSFALARQWFGVYITP-----------ELPNDEWLLDGLAGFLTDSFIKKF 388 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt~-----------~~w~d~WL~EGfA~y~~~~~~~~~ 388 (794)
..++|||..|.|-+-.+-| .--+.+|+-||+++|++.+++.+.
T Consensus 5 l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 5 LGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 3479999999999755554 445578999999999999887553
No 17
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=94.58 E-value=0.04 Score=65.82 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=77.3
Q ss_pred ccceeeehHHHHHHHHHHhhchHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcC-----------CCcccHHhHH
Q 003808 434 FGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN-----------LERPFLKEFF 502 (794)
Q Consensus 434 f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~e~~~~-----------~~~~dl~~f~ 502 (794)
|....-.|+.++.+|+++++|.+-|.+.+++.+...... ....|...+-...| ..+++++-++
T Consensus 445 ~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~------~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i 518 (1180)
T KOG1932|consen 445 YGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM------LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGI 518 (1180)
T ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh------HHHHHHHHHHhccCCeeEEEEEEEeeccccccHHH
Confidence 333345799999999999999999999999998876542 23333333322222 2467899999
Q ss_pred HhhhcCCCccEEEEEEEEeccCcEEEEEEEeecCCC
Q 003808 503 PRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVK 538 (794)
Q Consensus 503 ~~Wv~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~ 538 (794)
+||+.++|+..+.|...||++++.++..++|..+..
T Consensus 519 ~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 519 DQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred HHHhhhccccceeeecccchhhhhhhhhccccccCC
Confidence 999999999999999999999999999999877644
No 18
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=93.61 E-value=1.1 Score=44.80 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhcceeeeccCCCcccCCCCcc
Q 003808 343 IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASC 422 (794)
Q Consensus 343 ~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (794)
.+..-+|.|||+|-|=.+--.. .--||.||+|.|+-.. .|-. .+.-.
T Consensus 94 ~Ei~Gvl~HE~~H~~Q~~~~~~---~P~~liEGIADyVRl~-----aG~~---------------------~~~w~---- 140 (205)
T PF04450_consen 94 DEIIGVLYHEMVHCWQWDGRGT---APGGLIEGIADYVRLK-----AGYA---------------------PPHWK---- 140 (205)
T ss_pred HHHHHHHHHHHHHHhhcCCCCC---CChhheecHHHHHHHH-----cCCC---------------------Ccccc----
Confidence 3455689999999665444222 2249999999998321 1100 00000
Q ss_pred ccCCCCcccccccceeeehHHHHHHHHHH-hhchHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcCCCcccHHhH
Q 003808 423 KDLYGTQCIGIFGKIRSCKSVAILQMLEK-QMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEF 501 (794)
Q Consensus 423 ~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~-~lG~~~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~e~~~~~~~~dl~~f 501 (794)
.+... ..++ -.|.-.+..|.-||. ..|+ .|-+-|++=+.+..+. +...|. .+. |++++++
T Consensus 141 ~p~~~----~~wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y~------~~~~~~----~l~---G~~v~~L 201 (205)
T PF04450_consen 141 RPGGG----DSWD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKYS------SDDFWK----ELL---GKPVDEL 201 (205)
T ss_pred CCCCC----CCcc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCCC------cHhHHH----HHH---CcCHHHH
Confidence 00000 0111 247889999999998 6654 5666666666555441 223333 333 3568887
Q ss_pred HHh
Q 003808 502 FPR 504 (794)
Q Consensus 502 ~~~ 504 (794)
++.
T Consensus 202 W~e 204 (205)
T PF04450_consen 202 WAE 204 (205)
T ss_pred Hhh
Confidence 764
No 19
>PRK09687 putative lyase; Provisional
Probab=92.56 E-value=1 Score=47.61 Aligned_cols=99 Identities=22% Similarity=0.122 Sum_probs=73.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCC
Q 003808 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (794)
Q Consensus 661 ~~qL~~d~dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f~~~~~ 740 (794)
+-.+..|.|-.-+..|+.+|+..+..+..+...|...|.|+ -+.||.+|+.+|+++..+ ..++.|++..+.-
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~~~----~av~~Li~~L~~~-- 235 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALRKDK----RVLSVLIKELKKG-- 235 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHccCCh----hHHHHHHHHHcCC--
Confidence 33444688888999999999987544567788899999886 579999999999998764 4677888877631
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCChHHHHHHHHHhhh
Q 003808 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (794)
Q Consensus 741 ~~~~~i~~~n~f~~~~~y~~~~~i~~a~~~~r~~~~~~p~~~~~fl~~~l~ 791 (794)
.+ .+....|++.+-+ ++++..|..+++
T Consensus 236 -----~~-------------~~~a~~ALg~ig~------~~a~p~L~~l~~ 262 (280)
T PRK09687 236 -----TV-------------GDLIIEAAGELGD------KTLLPVLDTLLY 262 (280)
T ss_pred -----ch-------------HHHHHHHHHhcCC------HhHHHHHHHHHh
Confidence 11 2556788888843 367778888776
No 20
>PRK09687 putative lyase; Provisional
Probab=92.45 E-value=0.93 Score=47.96 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=73.7
Q ss_pred HHhhcCChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCC
Q 003808 663 QLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDE 742 (794)
Q Consensus 663 qL~~d~dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f~~~~~~~ 742 (794)
.+..|.+..-|..|+.+|++.+. ..+...|.+.|.|+. +.||..|+.+|+++..... .....|++.-.. +
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~~--~~ai~~L~~~L~d~~--~~VR~~A~~aLg~~~~~~~--~~~~~L~~~L~D----~ 204 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIND--EAAIPLLINLLKDPN--GDVRNWAAFALNSNKYDNP--DIREAFVAMLQD----K 204 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccCC--HHHHHHHHHHhcCCC--HHHHHHHHHHHhcCCCCCH--HHHHHHHHHhcC----C
Confidence 44568888999999999998753 457789999999975 4699999999999842211 234456655532 1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCChHHHHHHHHHhhhccC
Q 003808 743 NIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVMD 794 (794)
Q Consensus 743 ~~~i~~~n~f~~~~~y~~~~~i~~a~~~~r~~~~~~p~~~~~fl~~~l~~nd 794 (794)
+..|+++-..+|+.+++ +.|...|++.|+.++
T Consensus 205 --------------~~~VR~~A~~aLg~~~~------~~av~~Li~~L~~~~ 236 (280)
T PRK09687 205 --------------NEEIRIEAIIGLALRKD------KRVLSVLIKELKKGT 236 (280)
T ss_pred --------------ChHHHHHHHHHHHccCC------hhHHHHHHHHHcCCc
Confidence 33467778899988854 368888888887653
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.18 E-value=3.7 Score=51.06 Aligned_cols=104 Identities=28% Similarity=0.235 Sum_probs=59.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCC
Q 003808 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (794)
Q Consensus 661 ~~qL~~d~dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f~~~~~ 740 (794)
+.+|.+|+|...|..|+.+|+..... ..+...|...|.|+ .|.||.+|+.+|+++..++ .+..|++..+.
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~-~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l~~~~----a~~~L~~~L~D--- 849 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCP-PDDVAAATAALRAS--AWQVRQGAARALAGAAADV----AVPALVEALTD--- 849 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCc-chhHHHHHHHhcCC--ChHHHHHHHHHHHhccccc----hHHHHHHHhcC---
Confidence 33455666666666777777665322 11223456666664 3677777777776665432 23445555542
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCChHHHHHHHHHhhhccC
Q 003808 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVMD 794 (794)
Q Consensus 741 ~~~~~i~~~n~f~~~~~y~~~~~i~~a~~~~r~~~~~~p~~~~~fl~~~l~~nd 794 (794)
+ +-.|+++-..||+.+. -++.++..|..+|+-.|
T Consensus 850 -~--------------~~~VR~~A~~aL~~~~-----~~~~a~~~L~~al~D~d 883 (897)
T PRK13800 850 -P--------------HLDVRKAAVLALTRWP-----GDPAARDALTTALTDSD 883 (897)
T ss_pred -C--------------CHHHHHHHHHHHhccC-----CCHHHHHHHHHHHhCCC
Confidence 1 1247777778888762 25567777777776544
No 22
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=86.83 E-value=1.8 Score=36.43 Aligned_cols=54 Identities=31% Similarity=0.296 Sum_probs=43.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHHH
Q 003808 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 716 (794)
Q Consensus 659 m~~~qL~~d~dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~ 716 (794)
.....| +|.|..-|..|+.+|++.+ +..+...|.+.+.++.. ..||.+|+.+|+
T Consensus 35 ~L~~~l-~d~~~~vr~~a~~aL~~i~--~~~~~~~L~~~l~~~~~-~~vr~~a~~aL~ 88 (88)
T PF13646_consen 35 ALIELL-KDEDPMVRRAAARALGRIG--DPEAIPALIKLLQDDDD-EVVREAAAEALG 88 (88)
T ss_dssp HHHHHH-TSSSHHHHHHHHHHHHCCH--HHHTHHHHHHHHTC-SS-HHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHcCCCc-HHHHHHHHhhcC
Confidence 445555 8999999999999999884 45577889999988653 789999999996
No 23
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=79.72 E-value=2.4 Score=45.33 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 003808 345 TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (794)
Q Consensus 345 ~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~ 388 (794)
...+|-||||||=+.. -+|.=+||+||++.+..-+++.
T Consensus 165 LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 165 LARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHH
Confidence 3558999999993322 2477899999999987655443
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.36 E-value=15 Score=45.72 Aligned_cols=74 Identities=20% Similarity=0.083 Sum_probs=53.7
Q ss_pred eeEEEecCCCceEEEEcccCcHHHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHH
Q 003808 636 LSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYAL 715 (794)
Q Consensus 636 ~~wir~D~~~~~l~~v~~~~~~~m~~~qL~~d~dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL 715 (794)
..|.|+-.=+. +..+.-.++.++..|.|..-|..|+..|.+.. +..+...|.+.|.|+ ...||..|+.+|
T Consensus 607 ~~~~~~~~~~~------l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~--~~~~~~~L~~aL~D~--d~~VR~~Aa~aL 676 (897)
T PRK13800 607 PPSPRILAVLA------LDAPSVAELAPYLADPDPGVRRTAVAVLTETT--PPGFGPALVAALGDG--AAAVRRAAAEGL 676 (897)
T ss_pred CchHHHHHHHh------ccchhHHHHHHHhcCCCHHHHHHHHHHHhhhc--chhHHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 45666633222 24454334444458999999999999999874 344667899999886 679999999999
Q ss_pred Hhhc
Q 003808 716 ANTA 719 (794)
Q Consensus 716 ~~~~ 719 (794)
+++.
T Consensus 677 ~~l~ 680 (897)
T PRK13800 677 RELV 680 (897)
T ss_pred HHHH
Confidence 9884
No 25
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=76.04 E-value=10 Score=37.69 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhccccC----CCCCCchHHHHHHHHHHHHHHH
Q 003808 346 SIKLSFALARQWFGVYIT----PELPNDEWLLDGLAGFLTDSFI 385 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt----~~~w~d~WL~EGfA~y~~~~~~ 385 (794)
..++|||+.|-+--..+. ...--|..+.||+|.+++....
T Consensus 66 ~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~ 109 (195)
T PF10026_consen 66 PALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELY 109 (195)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHc
Confidence 458999999985433332 1122356799999999876543
No 26
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=75.56 E-value=4.6 Score=26.81 Aligned_cols=26 Identities=35% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHhccCcchhHHHHHHHHHHHhhc
Q 003808 692 NTLNNFLSDSKAFWRVRIEAAYALANTA 719 (794)
Q Consensus 692 ~~L~~~l~~~~~f~~vR~~Aa~aL~~~~ 719 (794)
..|.+.+.|+ -|.||..|+.+|+.+.
T Consensus 3 p~l~~~l~D~--~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDP--SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-S--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 3566778886 5999999999999875
No 27
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=74.13 E-value=4.1 Score=41.75 Aligned_cols=53 Identities=26% Similarity=0.221 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHHHhhccccc
Q 003808 669 DVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET 723 (794)
Q Consensus 669 dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~ 723 (794)
.-.-|.|+..-|.... |..++-.|.+.|.|+..--.||.+||.||+.+++++.
T Consensus 200 SalfrhEvAfVfGQl~--s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQ--SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred hHHHHHHHHHHHhhcc--chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 5556778887787653 3345667889999988888999999999999998754
No 28
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=72.90 E-value=45 Score=36.69 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=40.7
Q ss_pred EEecCCCceEEEEcccCcHHHHHHHHhhcCChHHHHHHHHHHHcC--------------CCCchhHHHHHHHHhccCc
Q 003808 639 IRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL--------------PHLSFNVVNTLNNFLSDSK 702 (794)
Q Consensus 639 ir~D~~~~~l~~v~~~~~~~m~~~qL~~d~dv~aq~eai~~l~~~--------------~~~~~~~~~~L~~~l~~~~ 702 (794)
.-+.-+|.---++++++++..+..++++|.|-..|-||.+.|... ...+..++.++..+|.|..
T Consensus 69 pSllRgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~ 146 (367)
T PF11940_consen 69 PSLLRGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDD 146 (367)
T ss_dssp EEESTTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SS
T ss_pred eehhcCcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCC
Confidence 455567777788888999999999999999999999999877643 0123345566666676544
No 29
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=71.78 E-value=12 Score=28.32 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=22.2
Q ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHhh
Q 003808 690 VVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (794)
Q Consensus 690 ~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~ 718 (794)
+...|...|.|... .||..|+.+|+++
T Consensus 29 ~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 29 LLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 45568888988765 9999999999864
No 30
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=69.29 E-value=28 Score=37.71 Aligned_cols=94 Identities=29% Similarity=0.305 Sum_probs=69.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHH
Q 003808 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (794)
Q Consensus 657 ~~m~~~qL~~d~dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f~ 736 (794)
.+.....| .+++..-+..|+..|...+ +..++..|.+.|.|+.+ .||-.|+.+|++...++ ....|++.+.
T Consensus 45 ~~~~~~~l-~~~~~~vr~~aa~~l~~~~--~~~av~~l~~~l~d~~~--~vr~~a~~aLg~~~~~~----a~~~li~~l~ 115 (335)
T COG1413 45 ADELLKLL-EDEDLLVRLSAAVALGELG--SEEAVPLLRELLSDEDP--RVRDAAADALGELGDPE----AVPPLVELLE 115 (335)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHhhhc--hHHHHHHHHHHhcCCCH--HHHHHHHHHHHccCChh----HHHHHHHHHH
Confidence 34445555 5669999999999999864 44567789999999864 99999999999887653 4566777776
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCC
Q 003808 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN 776 (794)
Q Consensus 737 ~~~~~~~~~i~~~n~f~~~~~y~~~~~i~~a~~~~r~~~~ 776 (794)
. + -+++++.+...||..+++.+.
T Consensus 116 ~---d--------------~~~~vR~~aa~aL~~~~~~~a 138 (335)
T COG1413 116 N---D--------------ENEGVRAAAARALGKLGDERA 138 (335)
T ss_pred c---C--------------CcHhHHHHHHHHHHhcCchhh
Confidence 3 2 134567777788888877653
No 31
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=69.19 E-value=5 Score=40.70 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHH
Q 003808 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKK 387 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~ 387 (794)
..+|-||||||=|... +|.=+||+||++.+..-+++
T Consensus 198 A~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~ 233 (376)
T COG4324 198 ASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRK 233 (376)
T ss_pred HHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHH
Confidence 3489999999966433 57789999999998654443
No 32
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=67.99 E-value=3.4 Score=27.15 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHhhccccccccchHHHHHHH
Q 003808 705 WRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (794)
Q Consensus 705 ~~vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f 735 (794)
|.||.+||.+|+++..++ +...|+++.
T Consensus 1 ~~vR~~aa~aLg~~~~~~----a~~~L~~~l 27 (30)
T smart00567 1 PLVRHEAAFALGQLGDEE----AVPALIKAL 27 (30)
T ss_pred CHHHHHHHHHHHHcCCHh----HHHHHHHHh
Confidence 579999999999986643 344455443
No 33
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=67.02 E-value=7.2 Score=25.06 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHH
Q 003808 707 VRIEAAYALANTASEETDWAGLLHLVKFY 735 (794)
Q Consensus 707 vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f 735 (794)
||.+||.+|+++..+ ..++.|+++.
T Consensus 1 VR~~Aa~aLg~igd~----~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDP----RAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SH----HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----HHHHHHHHHh
Confidence 789999999988864 3455565554
No 34
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=63.85 E-value=15 Score=36.38 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 003808 347 IKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (794)
Q Consensus 347 ~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~ 388 (794)
.++|||+.|-|.-. .--.--+.++-||+...++++|++..
T Consensus 95 siLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 95 SILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 47999999999622 22222367999999999999998753
No 35
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=60.88 E-value=1.2e+02 Score=37.08 Aligned_cols=114 Identities=12% Similarity=0.244 Sum_probs=58.1
Q ss_pred cEEEEEcCCchhHHH--------HHHHHHHHHHHHHHHhcCCCC-CCCCcc-----EEEECCCCcccccccccchhhhcc
Q 003808 265 LMSHICLPANVSKIH--------NTVEFFHNAFSHYETYLDAKF-PFGSYK-----QVFLAPEMAVSSSTFGAAMGIFSS 330 (794)
Q Consensus 265 ~v~~~~~p~~~~~~~--------~~~~~~~~~l~~~e~~~g~~Y-P~~k~~-----~V~vp~~~~~~~~~~gagl~~~~~ 330 (794)
.|.+..+|...+.+. ...++=..++++|.++.|.++ |-...+ .-|+- ++ ..|+|-..|+.
T Consensus 144 ~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~K-----AD-~~G~G~AYY~~ 217 (775)
T PF03272_consen 144 YIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAK-----AD-KSGPGAAYYGS 217 (775)
T ss_pred EEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEE-----ec-CCCCCCccccc
Confidence 466677777665554 334556788888888888533 211111 12221 21 12333344433
Q ss_pred ccccCccc-chhhh---HHHHHHHHHHHHHhhccccCC-CCCCchHHHHHHHHHHHHHHH
Q 003808 331 QILYDEKV-IDQAI---DTSIKLSFALARQWFGVYITP-ELPNDEWLLDGLAGFLTDSFI 385 (794)
Q Consensus 331 ~lL~~~~~-~~~~~---~~~~~iaHElAHQWfG~~Vt~-~~w~d~WL~EGfA~y~~~~~~ 385 (794)
...-.... ...-. .+--.+-|||+|.+=|.++.. ..+.+.| |-=+|.++++.++
T Consensus 218 ~w~a~ss~s~~~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~ 276 (775)
T PF03272_consen 218 NWTAQSSSSLSFYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYM 276 (775)
T ss_pred cceecCchhHHHHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhc
Confidence 32211111 11000 011257899999998888733 3455666 5556666666544
No 36
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=55.84 E-value=18 Score=34.03 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=32.0
Q ss_pred HHHHHHH-HhcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccCcccchh--hhHHHHHHHHHHHHHhhc
Q 003808 287 NAFSHYE-TYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQ--AIDTSIKLSFALARQWFG 359 (794)
Q Consensus 287 ~~l~~~e-~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~~~--~~~~~~~iaHElAHQWfG 359 (794)
+.++-++ .+|+.++|-+ .+.+-. .|-.. +|.... ...+-+++...+. ......+|.|||||.|..
T Consensus 5 ~~~~~~n~~~F~~~l~~~--~i~w~~-----r~~~~-~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHP--KVVWNK-----RLRKT-GGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCC--EEEEeh-----hhhhh-hHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444454 7888777765 333322 11111 122222 2224444443321 122345899999999975
No 37
>PRK04860 hypothetical protein; Provisional
Probab=53.85 E-value=33 Score=32.93 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccCcccch--hhhHHHHHHHHHHHHHhh
Q 003808 282 VEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVID--QAIDTSIKLSFALARQWF 358 (794)
Q Consensus 282 ~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~~--~~~~~~~~iaHElAHQWf 358 (794)
...+...+..-+++||.+||-+... |-.- +. . ||.... +..+=+++.... .......+|+|||||-|-
T Consensus 6 ~~~~~~~~~~a~~~f~~~f~~p~~~--f~~R---~r--t--aG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 6 MRRLRECLAQANLYFKRTFPEPKVS--YTQR---GT--S--AGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEEE--Eeec---ch--h--hcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 3445556666678888877765432 2111 11 1 232222 222323333211 112234589999999873
No 38
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=49.52 E-value=19 Score=30.09 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCCCCCccEEEECCCCcccccccccchhhhccccccCcccchh-hhHHHHHHHHHHHHHh
Q 003808 288 AFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQ-AIDTSIKLSFALARQW 357 (794)
Q Consensus 288 ~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~-~~~~~~~iaHElAHQW 357 (794)
+...+|..||.+ |+...+-.-|... ......+|--.+....+.+.+....+ .-....+++|||+|=+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~-~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAAS-RAAAALGARAFTVGNDIYFAPGKYNPDSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchh-hhhhccCCeEEEECCEEEEcCCCcCCCCCCcchhHhHHHHHHH
Confidence 456788999854 6665544322100 11112233223345555554332111 1123458999999954
No 39
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=48.62 E-value=35 Score=33.96 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCccccccccc----chhhhccccccCcccchhhhHHHHHHHHHHH
Q 003808 279 HNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354 (794)
Q Consensus 279 ~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~~~~~~~~~~iaHElA 354 (794)
+.+...+...+..|++.+|.++ ++ |.+-+ + ..-||. |.++++..|+.-|.. -..-+|+||||
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~--~~---i~ir~-~---ksrWGsc~~~~~I~ln~~L~~~P~~-----~idYVvvHEL~ 173 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPP--PK---IKIRD-M---KSRWGSCSSKGNITLNWRLVMAPPE-----VIDYVVVHELC 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--ce---EEEee-h---hhccccCCCCCcEEeecccccCCcc-----HHHHHHHHHHH
Confidence 3456777888899999988643 33 33321 1 124543 345555555443321 12348999999
Q ss_pred HHhhcc
Q 003808 355 RQWFGV 360 (794)
Q Consensus 355 HQWfG~ 360 (794)
|-..-|
T Consensus 174 Hl~~~n 179 (205)
T PF01863_consen 174 HLRHPN 179 (205)
T ss_pred HhccCC
Confidence 987544
No 40
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=44.42 E-value=1.1e+02 Score=33.03 Aligned_cols=61 Identities=30% Similarity=0.280 Sum_probs=38.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCc----------chhHHHHHHHHHHHhhccc
Q 003808 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSK----------AFWRVRIEAAYALANTASE 721 (794)
Q Consensus 659 m~~~qL~~d~dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~----------~f~~vR~~Aa~aL~~~~~~ 721 (794)
-.+..|..|.+-..+..|+.+|.+... ...+..|...+.|+. ..+.+|..|+.+|+.+..+
T Consensus 109 ~li~~l~~d~~~~vR~~aa~aL~~~~~--~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~ 179 (335)
T COG1413 109 PLVELLENDENEGVRAAAARALGKLGD--ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP 179 (335)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHhcCc--hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh
Confidence 345566667777777777777776532 233455666666644 4567777777777766654
No 41
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=36.92 E-value=1.2e+02 Score=28.65 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 003808 275 VSKIHNTVEFFHNAFSHYETYLDAKFPFG 303 (794)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~e~~~g~~YP~~ 303 (794)
...+..+...+..+.+||.++|| .=++.
T Consensus 66 ~~~~vdA~~~~~~v~d~y~~~~g-r~siD 93 (150)
T PF01447_consen 66 DSAAVDAHYNAGKVYDYYKNVFG-RNSID 93 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHS-S-STT
T ss_pred ccHHHHHHHhHHHHHHHHHHHHC-CCCcC
Confidence 34455677778899999999999 44654
No 42
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=36.44 E-value=3.3e+02 Score=28.36 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=74.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHcCCCCchh--------HHHHHHHHhccCcchhHHHHHHHHHHHhhcccccccc-c-
Q 003808 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFN--------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWA-G- 727 (794)
Q Consensus 658 ~m~~~qL~~d~dv~aq~eai~~l~~~~~~~~~--------~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~~-g- 727 (794)
.+.+.-|+..+|..-|-.|..+|......+.+ ....+...|.++ .-.||..|..+|..++....+.. .
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 46677888888988888888777765322111 122355566554 57999999999998876533221 1
Q ss_pred --hHHHHHHHHhcCCCCC---------CCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCChHHHHHHHHHh
Q 003808 728 --LLHLVKFYKSRRFDEN---------IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQL 789 (794)
Q Consensus 728 --~~~l~~~f~~~~~~~~---------~~i~~~n~f~~~~~y~~~~~i~~a~~~~r~~~~~~p~~~~~fl~~~ 789 (794)
+.++.+.-....++.. .++...|+. ++.+-+.||.-+..+...++++-..|...|++|
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 1122222111111111 123334433 556677888888888766666666777777765
No 43
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=35.83 E-value=36 Score=30.06 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhcccc
Q 003808 345 TSIKLSFALARQWFGVYI 362 (794)
Q Consensus 345 ~~~~iaHElAHQWfG~~V 362 (794)
.+-+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 345899999999988764
No 44
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=35.22 E-value=50 Score=31.31 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhcc
Q 003808 344 DTSIKLSFALARQWFGV 360 (794)
Q Consensus 344 ~~~~~iaHElAHQWfG~ 360 (794)
....+|.|||+|.|...
T Consensus 59 ~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 59 ELIDTLLHEMAHAAAYV 75 (157)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34558999999999743
No 45
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=31.51 E-value=54 Score=32.99 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhccccCC
Q 003808 346 SIKLSFALARQWFGVYITP 364 (794)
Q Consensus 346 ~~~iaHElAHQWfG~~Vt~ 364 (794)
.-+||||++|-.-++....
T Consensus 90 ~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 90 AAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHHHHHHHHHHHTTHCCCC
T ss_pred HHHHHHHHHHHHcCCcchH
Confidence 4589999999998877554
No 46
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=31.50 E-value=31 Score=30.21 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHh
Q 003808 346 SIKLSFALARQW 357 (794)
Q Consensus 346 ~~~iaHElAHQW 357 (794)
+.+++|||+|-|
T Consensus 80 ~~TL~HEL~H~W 91 (141)
T PHA02456 80 RDTLAHELNHAW 91 (141)
T ss_pred HHHHHHHHHHHH
Confidence 457999999999
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=27.95 E-value=2.5e+02 Score=24.39 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHHHHhccCcchhHHHHHHHHHHHhhcc
Q 003808 692 NTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (794)
Q Consensus 692 ~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~ 720 (794)
.-+.+++.|+. +|||..|+++|..++.
T Consensus 30 ~pVL~~~~D~d--~rVRy~AcEaL~ni~k 56 (97)
T PF12755_consen 30 PPVLKCFDDQD--SRVRYYACEALYNISK 56 (97)
T ss_pred HHHHHHcCCCc--HHHHHHHHHHHHHHHH
Confidence 34557787764 8999999999998864
No 48
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=27.95 E-value=28 Score=38.78 Aligned_cols=83 Identities=27% Similarity=0.276 Sum_probs=49.9
Q ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHH----HHHHHH
Q 003808 691 VNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFV----LEAIPH 766 (794)
Q Consensus 691 ~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f~~~~~~~~~~i~~~n~f~~~~~y~~----~~~i~~ 766 (794)
-++|+..+.+..- ++||+.||-+|+.-+..+....-+..+.+.--. .+.++|+|-+|.+|-- +..||.
T Consensus 575 F~~L~~Lv~~~~N-FKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~-------aLi~s~~~v~f~eY~~~Dsl~~q~c~ 646 (728)
T KOG4535|consen 575 FNALTSLVTSCKN-FKVRIRAAAALSVPGKREQYGDQYALSWNALVT-------ALQKSEDTIDFLEYKYCDSLRTQICQ 646 (728)
T ss_pred HHHHHHHHHHhcc-ceEeehhhhhhcCCCCcccchhHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666443 799999999999888765433222222222111 2446899999999964 555666
Q ss_pred HHhc----cccCCCCChHH
Q 003808 767 AVAM----VRAADNKSPRE 781 (794)
Q Consensus 767 a~~~----~r~~~~~~p~~ 781 (794)
|+.. .|..|-.|-+|
T Consensus 647 av~hll~la~SsdLp~mRE 665 (728)
T KOG4535|consen 647 ALIHLLSLASSSDLPCMRE 665 (728)
T ss_pred HHHHHHHHhhcccCcchhh
Confidence 6543 34444444443
No 49
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.23 E-value=30 Score=40.12 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=34.9
Q ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHhhccccccc--cchHHHHHHHHh
Q 003808 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--AGLLHLVKFYKS 737 (794)
Q Consensus 690 ~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~--~g~~~l~~~f~~ 737 (794)
+|-||.--|+|| ||.||.+|..+|.+.+...+.+ ..+..|..+|..
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfND 421 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFND 421 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Confidence 577787888885 8999999999999888765544 356777777653
No 50
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=27.01 E-value=33 Score=37.01 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 003808 347 IKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR 398 (794)
Q Consensus 347 ~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~ 398 (794)
.++|||+|||= | ...|+=|+|++++...+- .+..++|-.
T Consensus 198 ~T~~HElAHq~-G-----------~a~E~EANFiayLac~~s-~d~~frYSg 236 (318)
T PF12725_consen 198 FTICHELAHQL-G-----------FASEDEANFIAYLACINS-PDPYFRYSG 236 (318)
T ss_pred HHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhcC-CChheeHHH
Confidence 37999999993 2 236888999988876542 333334443
No 51
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=26.26 E-value=42 Score=32.60 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHh
Q 003808 346 SIKLSFALARQW 357 (794)
Q Consensus 346 ~~~iaHElAHQW 357 (794)
..++||||+|||
T Consensus 112 ~~~~aHElGH~l 123 (173)
T PF13574_consen 112 IDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehhhhHhhc
Confidence 347999999997
No 52
>PRK03001 M48 family peptidase; Provisional
Probab=26.14 E-value=1e+02 Score=32.55 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhc
Q 003808 345 TSIKLSFALARQWFG 359 (794)
Q Consensus 345 ~~~~iaHElAHQWfG 359 (794)
...++|||++|-==+
T Consensus 124 l~aVlAHElgHi~~~ 138 (283)
T PRK03001 124 IRGVMAHELAHVKHR 138 (283)
T ss_pred HHHHHHHHHHHHhCC
Confidence 445899999996433
No 53
>PRK03982 heat shock protein HtpX; Provisional
Probab=25.53 E-value=1.2e+02 Score=32.29 Aligned_cols=16 Identities=6% Similarity=-0.219 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhcc
Q 003808 345 TSIKLSFALARQWFGV 360 (794)
Q Consensus 345 ~~~~iaHElAHQWfG~ 360 (794)
..-++|||++|-==|+
T Consensus 125 l~AVlAHElgHi~~~h 140 (288)
T PRK03982 125 LEGVIAHELTHIKNRD 140 (288)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4458999999975443
No 54
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=25.36 E-value=1.8e+02 Score=32.84 Aligned_cols=104 Identities=6% Similarity=0.012 Sum_probs=54.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhcCCCCCCC--CccEEEECCCCccccc--ccccchhhh--ccccccCcccchhhhHH
Q 003808 272 PANVSKIHNTVEFFHNAFSHYETYLDAKFPFG--SYKQVFLAPEMAVSSS--TFGAAMGIF--SSQILYDEKVIDQAIDT 345 (794)
Q Consensus 272 p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~--k~~~V~vp~~~~~~~~--~~gagl~~~--~~~lL~~~~~~~~~~~~ 345 (794)
|+..+.+..+-..+....+||.++||- =.+. .+.++..--+ ...-. .|-+-=.+| .+..+|++-. ..
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr-~S~Dn~g~~l~s~vHy-G~~ynNAfWdG~qMvyGDGDG~~f~~~S-----~s 337 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGR-NSYDNNGMPLVSTVHY-GKNYNNAFWDGDQMVYGDGDGSFFTPFS-----GS 337 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhcc-cCcCCCCCceEEEEee-ccccccccccCceeEeecCCcceecccc-----cc
Confidence 444455566777888999999999983 2332 2444422100 00001 121111122 1223333221 12
Q ss_pred HHHHHHHHHHHhhc---cccCCCCCCchHHHHHHHHHHHHHH
Q 003808 346 SIKLSFALARQWFG---VYITPELPNDEWLLDGLAGFLTDSF 384 (794)
Q Consensus 346 ~~~iaHElAHQWfG---~~Vt~~~w~d~WL~EGfA~y~~~~~ 384 (794)
..++||||.|.--+ +|+--..- ==|||+|+.-+.-++
T Consensus 338 LDVvAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i 377 (507)
T COG3227 338 LDVVAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLI 377 (507)
T ss_pred cceehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHH
Confidence 34799999996544 44443322 258999999887544
No 55
>PRK01345 heat shock protein HtpX; Provisional
Probab=24.07 E-value=1.2e+02 Score=32.85 Aligned_cols=67 Identities=7% Similarity=-0.055 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCccEEEECCCCccccccccc----chhhhccccccCcccchhhhHHHHHHHHHHHHHhhcc
Q 003808 285 FHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGV 360 (794)
Q Consensus 285 ~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~ 360 (794)
..+.++-+.+..|++ .+++ ..+++...++. ..|. +.+.+++.||-.- + ..+..-++|||++|.==++
T Consensus 69 L~~~v~~La~~agi~--~p~v--~vid~~~~NAF-a~G~~~~~~~V~vt~gLL~~L---~-~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKV--YIIDNPQPNAF-ATGRNPENAAVAATTGLLQRL---S-PEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcE--EEEcCCCcceE-EecCCCCCeEEEechHHHhhC---C-HHHHHHHHHHHHHHHHcCC
Confidence 345556666677765 4553 44443322331 2221 1233344444211 1 1234558999999975444
No 56
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=23.47 E-value=90 Score=26.82 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhhcccc-ccccch-HHHHHHHHhcCCCCCC
Q 003808 704 FWRVRIEAAYALANTASEE-TDWAGL-LHLVKFYKSRRFDENI 744 (794)
Q Consensus 704 f~~vR~~Aa~aL~~~~~~~-~~~~g~-~~l~~~f~~~~~~~~~ 744 (794)
-|.+|-.||.-|+.+...- ..+.++ +.+.+.+.+.+.+|..
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~ 61 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKK 61 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCC
Confidence 5999999999999987653 344554 5778888877777643
No 57
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=22.84 E-value=1.2e+02 Score=36.90 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=18.4
Q ss_pred cCcchhHHHHHHHHHHHhhccc
Q 003808 700 DSKAFWRVRIEAAYALANTASE 721 (794)
Q Consensus 700 ~~~~f~~vR~~Aa~aL~~~~~~ 721 (794)
|++.-|.||-+||++|+.+-..
T Consensus 341 DeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 341 DEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHhc
Confidence 5566799999999999987654
No 58
>PRK04351 hypothetical protein; Provisional
Probab=22.68 E-value=95 Score=29.40 Aligned_cols=12 Identities=8% Similarity=-0.095 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q 003808 345 TSIKLSFALARQ 356 (794)
Q Consensus 345 ~~~~iaHElAHQ 356 (794)
...+|+|||+|-
T Consensus 61 l~~vv~HElcH~ 72 (149)
T PRK04351 61 LIGIIKHELCHY 72 (149)
T ss_pred HHhhHHHHHHHH
Confidence 345899999995
No 59
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.23 E-value=6.4e+02 Score=29.07 Aligned_cols=116 Identities=23% Similarity=0.295 Sum_probs=69.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchh---------HHHHHHHHhccCcchhHHHHHHHHHHHhhccccccc----
Q 003808 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW---- 725 (794)
Q Consensus 659 m~~~qL~~d~dv~aq~eai~~l~~~~~~~~~---------~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~---- 725 (794)
..+.=|.++-+-.-|.||+.+|....+++.. ++-+|...|... .=.||.+|+-||+.++.+.+..
T Consensus 113 ~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~--~~~v~eQavWALgNIagds~~~Rd~v 190 (514)
T KOG0166|consen 113 RLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP--SADVREQAVWALGNIAGDSPDCRDYV 190 (514)
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC--cHHHHHHHHHHHhccccCChHHHHHH
Confidence 3455555554455599999999877554332 233467777664 4689999999999999875432
Q ss_pred ---cchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhcc-ccCCCCChH-----HHHHHHHHhhhccC
Q 003808 726 ---AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADNKSPR-----EAVEFVLQLLKVMD 794 (794)
Q Consensus 726 ---~g~~~l~~~f~~~~~~~~~~i~~~n~f~~~~~y~~~~~i~~a~~~~-r~~~~~~p~-----~~~~fl~~~l~~nd 794 (794)
..+..|+...... .. --+...+..+|+.+ |..+ ..|+ ++..-|+.+|+..|
T Consensus 191 l~~g~l~pLl~~l~~~-----------~~------~~~lRn~tW~LsNlcrgk~-P~P~~~~v~~iLp~L~~ll~~~D 250 (514)
T KOG0166|consen 191 LSCGALDPLLRLLNKS-----------DK------LSMLRNATWTLSNLCRGKN-PSPPFDVVAPILPALLRLLHSTD 250 (514)
T ss_pred HhhcchHHHHHHhccc-----------cc------hHHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHhcCC
Confidence 3466676666531 00 11234445666654 2222 2232 35556777777665
No 60
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.86 E-value=2.2e+02 Score=32.01 Aligned_cols=77 Identities=14% Similarity=0.019 Sum_probs=51.2
Q ss_pred EecCCCceEEEEcccCcHHHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHHHhhc
Q 003808 640 RADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (794)
Q Consensus 640 r~D~~~~~l~~v~~~~~~~m~~~qL~~d~dv~aq~eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~ 719 (794)
|+++...+|...- ..-....+..|..+.+..-...|+.+|..... ..++.+|.++|.|.. =+||.+||.+|+++.
T Consensus 40 RL~AhLdgL~~~G-~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~~~~~L~~~L~d~~--~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 40 RLLAHVDGLVLAG-KAATELLVSALAEADEPGRVACAALALLAQED--ALDLRSVLAVLQAGP--EGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHHHHHhh-HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC--hHHHHHHHHHhcCCC--HHHHHHHHHHHhcCC
Confidence 5555555655552 11234557788777766666678877775432 234688999998865 379999999999876
Q ss_pred cc
Q 003808 720 SE 721 (794)
Q Consensus 720 ~~ 721 (794)
.+
T Consensus 115 ~~ 116 (410)
T TIGR02270 115 GR 116 (410)
T ss_pred ch
Confidence 54
No 61
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=20.45 E-value=1.7e+02 Score=29.86 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCCCccccccccc----chhhhccccccCcccchhhhHHHHHHHHHHHH
Q 003808 280 NTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALAR 355 (794)
Q Consensus 280 ~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~~~~~~~~~~iaHElAH 355 (794)
.+.+.....++.|.+.+|.++.--++. .. ..-||. |-+.++..+..-|. ....-+++|||||
T Consensus 120 ~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~-------k~~WGScs~~~~i~~~~~l~~~p~-----~~i~YVvvHELaH 185 (223)
T COG1451 120 ILREILEIRLKEYAKKLGVPPRAIKLK--NM-------KRRWGSCSKAGEIRFNWRLVMAPE-----EVIDYVVVHELAH 185 (223)
T ss_pred HHHHHHHHHHHHHHHHhCCCccceeee--ec-------cceeeeecCCCcEEeehhhhcCCH-----HHHHHHHHHHHHH
Confidence 555677788888999999765422222 11 123432 22222322222221 1123489999999
Q ss_pred Hhhcc
Q 003808 356 QWFGV 360 (794)
Q Consensus 356 QWfG~ 360 (794)
-=..|
T Consensus 186 Lke~n 190 (223)
T COG1451 186 LKEKN 190 (223)
T ss_pred Hhhhh
Confidence 98877
No 62
>PF04293 SpoVR: SpoVR like protein; InterPro: IPR007390 One of the family members P37875 from SWISSPROT is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation []. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR [].
Probab=20.16 E-value=2.6e+02 Score=31.36 Aligned_cols=35 Identities=9% Similarity=0.257 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 003808 348 KLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (794)
Q Consensus 348 ~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~ 388 (794)
.|..+.|.=++.-. ..+ =+|||+|+|--+.++.++
T Consensus 246 ~iVR~ea~YF~PQ~-qTK-----IMNEGWAsywH~~im~~l 280 (426)
T PF04293_consen 246 RIVREEAQYFYPQI-QTK-----IMNEGWASYWHYRIMREL 280 (426)
T ss_pred HHHHHHHHHhcchh-hhh-----hhccchHHHHHHHHHhhc
Confidence 45666664333332 222 389999999998888776
No 63
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=20.02 E-value=81 Score=35.44 Aligned_cols=52 Identities=6% Similarity=0.072 Sum_probs=28.5
Q ss_pred CCCCccEEEECCCCcccccccccchhhhccccccCcccchhhhHHHHHHHHHHHHH
Q 003808 301 PFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQ 356 (794)
Q Consensus 301 P~~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQ 356 (794)
|-..+.++.|-+...++-...| |-+...+.+|...+. ..+...+||||++|-
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~G-g~v~vntGLll~ae~---esElagViAHEigHv 141 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPG-GYVVVNTGLLLTAEN---ESELAGVIAHEIGHV 141 (484)
T ss_pred CCCCeEEEEecCCccchhhcCC-ceEEEehHHHHhcCC---HHHHHHHHHHHHHHH
Confidence 4455778888754433322222 344445554433221 224456999999995
Done!