BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003809
(794 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 330 bits (846), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 215/652 (32%), Positives = 346/652 (53%), Gaps = 113/652 (17%)
Query: 18 NIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLLQKAIADEYL 77
++F+EFL +F+ + N ++ Y I + A ++ I+FS V+ +N+ L I +
Sbjct: 6 DVFIEFLTTFKGNNN---QNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTK 62
Query: 78 RFEPYLKNACKRFVMEQNPNFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTG 137
P L+ A +++ +P + D + ++V IP LR++ + +IG+L+++ G
Sbjct: 63 IILPILEGALYDHILQLDPTYQRD---IEKVHVRIVGIPRVIELRKIRSTDIGKLITIDG 119
Query: 138 VVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTE----------PTICANATCSNRT 187
++ + + V+ + + T+K + + Q+F++ E PTIC C
Sbjct: 120 ILVKVTPVKERIYKATYKHIH-----PDCMQEFEWPEDEEMPEVLEMPTICPK--CGKPG 172
Query: 188 NWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFTGTVV 247
+ L+ + +K DWQ+ +QE +E+P+G LPR L++IL D+V+ AR GD V TG +
Sbjct: 173 QFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILD 232
Query: 248 VIPDILAMGSPGERAECRREASQRKSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIAD 307
+ D SP +R G RA V D+ +++ I S ++ D
Sbjct: 233 IKQD-----SPVKR---------------------GSRA--VFDIYMKVSSIEVSQKVLD 264
Query: 308 GRRDTDIRNRKKDADEEDQHQFTTEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRA 367
+ EED+ + I+ + P ++I+ SI P+++GH ++K A
Sbjct: 265 ----------EVIISEEDEKK--------IKDLAKDPWIRDRIISSIAPSIYGHWELKEA 306
Query: 368 ILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAA 427
+ L L GGV K+ E +RGDI++ I+GDP AKSQ L++ + + PR+VYT+GK S+AA
Sbjct: 307 LALALFGGVPKVL-EDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAA 365
Query: 428 GLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKA 487
GLTA+V +E TGE+ +EAGAL+LAD GI IDE DKM D+VAIHEAMEQQT+SI KA
Sbjct: 366 GLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKA 425
Query: 488 GIQATLNARTSILAAANPAGGRYDKSKPLKKHEDALAPAFTT------------------ 529
GI A LNAR +++AA NP GRY +P+ + + L P +
Sbjct: 426 GIVAKLNARAAVIAAGNPKFGRYISERPVSDNIN-LPPTILSRFDLIFILKDQPGEQDRE 484
Query: 530 --------------------AQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDT-T 567
L++YIAYA K + PK++ EA+ L+ D +V +R+ + T
Sbjct: 485 LANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSET 544
Query: 568 PGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVISV 619
P S + +T RQLEALIR+SEA A+ L+ +V A+ +++ + SV
Sbjct: 545 PDSPIL--ITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFLESV 594
>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|B Chain B, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|C Chain C, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
Length = 268
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 129/248 (52%), Gaps = 23/248 (9%)
Query: 9 VDEKAVRVENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLL 68
+ K + ++F+EFL +F+ + N ++ Y I + A ++ I+FS V+ +N+ L
Sbjct: 3 IPSKQIDYRDVFIEFLTTFKGNNN---QNKYIERINELVAYRKKSLIIEFSDVLSFNENL 59
Query: 69 QKAIADEYLRFEPYLKNACKRFVMEQNPNFISDDNPNKDINVAFFNIPFSKRLRELTTAE 128
I + P L+ A +++ +P + D + ++V IP LR++ + +
Sbjct: 60 AYEIINNTKIILPILEGALYDHILQLDPTYQRD---IEKVHVRIVGIPRVIELRKIRSTD 116
Query: 129 IGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTE----------PTIC 178
IG+L+++ G++ + + V+ + + T+K + + Q+F++ E PTIC
Sbjct: 117 IGKLITIDGILVKVTPVKERIYKATYKHIH-----PDCMQEFEWPEDEEMPEVLEMPTIC 171
Query: 179 ANATCSNRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGD 238
C + L+ + +K DWQ+ +QE +E+P+G LPR L++IL D+V+ AR GD
Sbjct: 172 PK--CGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGD 229
Query: 239 TVIFTGTV 246
V TG +
Sbjct: 230 RVKVTGIL 237
>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|B Chain B, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|C Chain C, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|D Chain D, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|E Chain E, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|F Chain F, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
Length = 279
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Query: 105 NKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIK 164
N D+N+ F I LREL + IG+ V+V G+V +T E+RP +++ F+C C
Sbjct: 86 NVDLNIRFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHA 145
Query: 165 NVEQQFKYTEPTICANATCSNRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDV 224
+ TEP++C+ C R+ + LL+ +S+F D Q +++QE + + G PR + V
Sbjct: 146 VTQSTNMITEPSLCSE--CGGRS-FRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITV 202
Query: 225 ILRHDIVEQARAGDTVIFTGTVVVIPD 251
+L D+V+ GD V TGT+ + D
Sbjct: 203 VLEDDLVDTLTPGDIVRVTGTLRTVRD 229
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 147/337 (43%), Gaps = 62/337 (18%)
Query: 333 EIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINV 392
E++E + + + D +I P + G +++ + + L L V K + ++V
Sbjct: 192 ELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGKNSER-------LHV 242
Query: 393 CIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLA 452
+ G P + PR VY + + LTA + E + + AGA +LA
Sbjct: 243 LLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLK---EDRGWALRAGAAVLA 299
Query: 453 DNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDK 512
D GI +D + + A+ EAM++ T+++ GI LNAR ++LAA NP G ++
Sbjct: 300 DGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINP-GEQWPS 354
Query: 513 SKPLKK---------HEDALA------------------PAFTTAQLKRYIAYA--KTLK 543
P+ + H D +A P++T L+RY+ YA +
Sbjct: 355 DPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTL--LRRYLLYAIREHPA 412
Query: 544 PKLSLEARKLLVDSYVALRR------GDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLE 597
P+L+ EARK L Y R G P V T RQLE++ RL++A AR L
Sbjct: 413 PELTEEARKRLEHWYETRREEVEERLGMGLPTLPV----TRRQLESVERLAKAHARMRLS 468
Query: 598 TQVHPRHVRVAVRL----LKTSVISVESSEIDLSEFQ 630
V P V +A L L+T++ EI +S +
Sbjct: 469 DDVEPEDVDIAAELVDWYLETAMQIPGGDEIRISSLK 505
>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 723 WYVEQQNEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIV-----VDDGRQAAAEGEGR 777
WY E +E++ ++ EV K K +I + ++ E H + DG A G G
Sbjct: 166 WYTEDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDG-TGATWGMGN 224
Query: 778 PSRDDR---------ILAVAPNYVI 793
P+ D IL VAP+++I
Sbjct: 225 PATDWNLAAERIGKAILKVAPHWLI 249
>pdb|3QHM|A Chain A, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|B Chain B, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|C Chain C, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 723 WYVEQQNEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIV-----VDDGRQAAAEGEGR 777
WY E +E++ ++ EV K K +I + ++ E H + DG A G G
Sbjct: 166 WYTEDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDG-TGATWGMGN 224
Query: 778 PSRDDR---------ILAVAPNYVI 793
P+ D IL VAP+++I
Sbjct: 225 PATDWNLAAERIGKAILKVAPHWLI 249
>pdb|2ZUM|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 723 WYVEQQNEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIV-----VDDGRQAAAEGEGR 777
WY E +E++ ++ EV K K +I + ++ E H + DG A G G
Sbjct: 166 WYTEDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDG-TGATWGMGN 224
Query: 778 PSRDDR---------ILAVAPNYVI 793
P+ D IL VAP+++I
Sbjct: 225 PATDWNLAAERIGKAILKVAPHWLI 249
>pdb|3AXX|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 723 WYVEQQNEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIV-----VDDGRQAAAEGEGR 777
WY E +E++ ++ EV K K +I + ++ E H + DG A G G
Sbjct: 166 WYTEDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDG-TGATWGMGN 224
Query: 778 PSRDDR---------ILAVAPNYVI 793
P+ D IL VAP+++I
Sbjct: 225 PATDWNLAAERIGKAILKVAPHWLI 249
>pdb|4DM2|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 723 WYVEQQNEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIV-----VDDGRQAAAEGEGR 777
WY E +E++ ++ EV K K +I + ++ E H + DG A G G
Sbjct: 133 WYTEDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDG-TGATWGMGN 191
Query: 778 PSRDDR---------ILAVAPNYVI 793
P+ D IL VAP+++I
Sbjct: 192 PATDWNLAAERIGKAILKVAPHWLI 216
>pdb|4DM1|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 723 WYVEQQNEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIV-----VDDGRQAAAEGEGR 777
WY E +E++ ++ EV K K +I + ++ E H + DG A G G
Sbjct: 133 WYTEDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDG-TGATWGMGN 191
Query: 778 PSRDDR---------ILAVAPNYVI 793
P+ D IL VAP+++I
Sbjct: 192 PATDWNLAAERIGKAILKVAPHWLI 216
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 439 TGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTS 498
TG + G L LAD G +DE ++D R Q + +E T S T+ G +
Sbjct: 208 TGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLE--TGSFTRLGGNQKIEVDIR 265
Query: 499 ILAAAN 504
+++A N
Sbjct: 266 VISATN 271
>pdb|1S95|A Chain A, Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5
pdb|1S95|B Chain B, Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5
Length = 333
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 718 KDLIKWYVEQQ--NEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIVVDD 766
K+L++WY +Q+ + K Y + +VK+ +SKL ++E+ ++ + V D
Sbjct: 26 KELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGD 76
>pdb|3H60|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Mn2+ Atoms
pdb|3H60|B Chain B, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Mn2+ Atoms
pdb|3H61|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Norcantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H61|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Norcantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H62|C Chain C, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H62|B Chain B, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H63|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H63|C Chain C, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H64|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Endothall
pdb|3H64|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Endothall
pdb|3H66|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms
pdb|3H66|B Chain B, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms
pdb|3H67|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H67|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H68|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H68|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H69|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms Complexed With Endothall
pdb|3H69|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms Complexed With Endothall
Length = 315
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 718 KDLIKWYVEQQ--NEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIVVDD 766
K+L++WY +Q+ + K Y + +VK+ +SKL ++E+ ++ + V D
Sbjct: 17 KELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGD 67
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 718 KDLIKWYVEQQ--NEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIVVDD 766
K+L++WY +Q+ + K Y + +VK+ +SKL ++E+ ++ + V D
Sbjct: 170 KELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGD 220
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 277 GHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADEEDQHQFTTEEIDE 336
GHD LR + L ++A ++ +V + + DT + N A E Q++ E+I+E
Sbjct: 404 GHD----LREYTLASLRNQVALVSQNVHLFN---DT-VANNIAYARTE---QYSREQIEE 452
Query: 337 IQRMRNAPDFFNKIVDSIGPTVFGHQDI 364
RM A DF NK+ D+ TV G +
Sbjct: 453 AARMAYAMDFINKM-DNGLDTVIGENGV 479
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,798,986
Number of Sequences: 62578
Number of extensions: 808250
Number of successful extensions: 2308
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2285
Number of HSP's gapped (non-prelim): 26
length of query: 794
length of database: 14,973,337
effective HSP length: 107
effective length of query: 687
effective length of database: 8,277,491
effective search space: 5686636317
effective search space used: 5686636317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)