Query 003809
Match_columns 794
No_of_seqs 416 out of 3081
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 12:26:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0480 DNA replication licens 100.0 1E-162 3E-167 1339.8 50.4 706 7-793 16-764 (764)
2 COG1241 MCM2 Predicted ATPase 100.0 9E-108 2E-112 941.5 52.0 547 15-619 2-599 (682)
3 PTZ00111 DNA replication licen 100.0 4E-103 8E-108 920.2 61.3 668 8-765 80-905 (915)
4 KOG0481 DNA replication licens 100.0 2E-104 4E-109 856.5 42.3 561 12-619 24-646 (729)
5 KOG0478 DNA replication licens 100.0 2E-102 3E-107 868.3 36.4 562 11-619 128-731 (804)
6 KOG0482 DNA replication licens 100.0 1E-102 3E-107 841.8 33.0 556 17-622 14-648 (721)
7 KOG0479 DNA replication licens 100.0 2E-100 5E-105 834.6 44.9 553 9-618 6-648 (818)
8 KOG0477 DNA replication licens 100.0 8E-101 2E-105 843.3 27.8 557 10-622 155-767 (854)
9 smart00350 MCM minichromosome 100.0 2.8E-86 6E-91 763.7 50.0 462 119-617 3-509 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 1.7E-61 3.6E-66 529.7 6.5 282 333-616 1-330 (331)
11 COG0606 Predicted ATPase with 99.9 1.8E-24 4E-29 238.4 12.8 243 356-612 179-485 (490)
12 TIGR00368 Mg chelatase-related 99.9 5.2E-23 1.1E-27 235.7 19.0 229 356-611 192-498 (499)
13 TIGR02442 Cob-chelat-sub cobal 99.9 7.1E-22 1.5E-26 234.0 21.0 238 355-616 3-309 (633)
14 PRK09862 putative ATP-dependen 99.9 1.1E-21 2.3E-26 224.0 20.0 230 356-612 191-492 (506)
15 PF01078 Mg_chelatase: Magnesi 99.9 2.1E-22 4.5E-27 203.8 11.2 143 355-511 2-165 (206)
16 TIGR02030 BchI-ChlI magnesium 99.9 5.3E-21 1.2E-25 209.3 21.1 239 355-617 3-315 (337)
17 PRK13407 bchI magnesium chelat 99.9 6.2E-21 1.4E-25 208.4 20.6 236 356-617 8-312 (334)
18 TIGR02031 BchD-ChlD magnesium 99.9 9.8E-21 2.1E-25 222.1 21.7 232 362-617 1-264 (589)
19 CHL00081 chlI Mg-protoporyphyr 99.9 1.2E-20 2.7E-25 206.5 18.0 238 356-617 17-328 (350)
20 PRK13531 regulatory ATPase Rav 99.8 4.3E-19 9.4E-24 199.4 20.9 246 347-619 11-291 (498)
21 COG1239 ChlI Mg-chelatase subu 99.8 1.4E-18 3E-23 190.0 16.8 235 354-612 15-322 (423)
22 PRK13406 bchD magnesium chelat 99.8 1.3E-17 2.9E-22 194.2 21.5 229 361-617 8-256 (584)
23 PF14551 MCM_N: MCM N-terminal 99.8 1.6E-18 3.5E-23 162.5 8.0 116 16-137 1-121 (121)
24 COG0714 MoxR-like ATPases [Gen 99.7 2.7E-16 5.9E-21 173.0 21.3 244 347-613 15-297 (329)
25 TIGR00764 lon_rel lon-related 99.7 2.2E-16 4.8E-21 185.8 19.7 168 444-617 208-396 (608)
26 TIGR02902 spore_lonB ATP-depen 99.6 7.9E-15 1.7E-19 170.7 22.0 249 331-610 37-330 (531)
27 TIGR02640 gas_vesic_GvpN gas v 99.6 4.4E-15 9.6E-20 158.3 18.0 211 391-614 23-260 (262)
28 PF05496 RuvB_N: Holliday junc 99.6 2.3E-15 5E-20 153.8 13.7 199 348-592 16-229 (233)
29 TIGR01650 PD_CobS cobaltochela 99.6 8.2E-14 1.8E-18 150.9 21.4 199 391-591 66-283 (327)
30 PF07726 AAA_3: ATPase family 99.6 2.7E-15 5.9E-20 140.5 8.1 112 391-507 1-114 (131)
31 PRK13765 ATP-dependent proteas 99.6 6E-14 1.3E-18 164.9 18.7 161 444-610 217-398 (637)
32 COG2255 RuvB Holliday junction 99.6 8.7E-14 1.9E-18 144.7 17.5 211 357-612 27-251 (332)
33 COG3829 RocR Transcriptional r 99.5 4.6E-14 9.9E-19 158.5 13.3 182 389-588 268-475 (560)
34 COG3604 FhlA Transcriptional r 99.5 6.3E-14 1.4E-18 155.4 13.3 206 357-592 224-456 (550)
35 COG2204 AtoC Response regulato 99.5 2.2E-13 4.7E-18 153.3 13.7 223 353-608 138-387 (464)
36 KOG0734 AAA+-type ATPase conta 99.4 5.9E-13 1.3E-17 147.5 10.9 220 331-629 313-555 (752)
37 PF07728 AAA_5: AAA domain (dy 99.3 1.2E-12 2.7E-17 125.6 6.9 115 391-507 1-125 (139)
38 PRK00080 ruvB Holliday junctio 99.3 1.6E-11 3.5E-16 135.2 16.3 212 355-612 24-250 (328)
39 PRK15424 propionate catabolism 99.3 3.7E-11 8E-16 139.4 16.7 204 391-605 244-478 (538)
40 TIGR02974 phageshock_pspF psp 99.3 1.6E-11 3.4E-16 135.1 12.5 195 390-604 23-242 (329)
41 TIGR00635 ruvB Holliday juncti 99.3 9E-11 1.9E-15 127.7 18.1 210 356-611 4-228 (305)
42 PHA02244 ATPase-like protein 99.3 4E-11 8.6E-16 131.5 14.7 110 391-507 121-232 (383)
43 CHL00181 cbbX CbbX; Provisiona 99.3 2.4E-11 5.2E-16 131.2 12.0 207 347-588 14-250 (287)
44 COG1222 RPT1 ATP-dependent 26S 99.2 3.9E-11 8.3E-16 128.8 12.2 181 391-614 187-394 (406)
45 TIGR02329 propionate_PrpR prop 99.2 8.2E-11 1.8E-15 136.6 14.5 206 391-607 237-465 (526)
46 COG1223 Predicted ATPase (AAA+ 99.2 6.1E-11 1.3E-15 122.0 11.8 207 351-611 116-354 (368)
47 TIGR02880 cbbX_cfxQ probable R 99.2 6.1E-11 1.3E-15 128.0 11.7 218 354-596 20-257 (284)
48 PF00158 Sigma54_activat: Sigm 99.2 2E-11 4.3E-16 121.7 7.1 114 390-506 23-144 (168)
49 TIGR02903 spore_lon_C ATP-depe 99.2 2.8E-10 6E-15 134.9 17.6 255 330-611 125-429 (615)
50 PRK05022 anaerobic nitric oxid 99.2 1.4E-10 3E-15 135.1 14.6 210 355-594 186-422 (509)
51 PRK05342 clpX ATP-dependent pr 99.2 2.4E-11 5.2E-16 137.0 6.9 162 350-511 65-248 (412)
52 COG1221 PspF Transcriptional r 99.2 6.7E-11 1.5E-15 131.2 10.2 223 347-597 69-314 (403)
53 PRK11388 DNA-binding transcrip 99.2 3.1E-10 6.8E-15 135.8 15.7 195 391-609 350-568 (638)
54 PRK11608 pspF phage shock prot 99.2 1.6E-10 3.5E-15 127.1 12.1 185 391-592 31-240 (326)
55 TIGR01817 nifA Nif-specific re 99.2 2E-10 4.3E-15 134.8 13.5 195 391-606 221-439 (534)
56 TIGR00382 clpX endopeptidase C 99.1 1.2E-10 2.5E-15 130.9 9.0 162 347-511 68-256 (413)
57 TIGR02881 spore_V_K stage V sp 99.1 3.6E-10 7.8E-15 120.6 11.2 213 357-592 7-238 (261)
58 PRK10820 DNA-binding transcrip 99.1 6.3E-10 1.4E-14 129.8 13.9 194 391-605 229-447 (520)
59 PRK03992 proteasome-activating 99.1 5.2E-10 1.1E-14 126.0 12.7 184 391-616 167-376 (389)
60 TIGR02915 PEP_resp_reg putativ 99.1 7.3E-10 1.6E-14 126.9 13.9 196 390-605 163-382 (445)
61 COG2256 MGS1 ATPase related to 99.1 9.4E-10 2E-14 120.0 12.5 198 357-609 25-235 (436)
62 PRK11361 acetoacetate metaboli 99.1 1.5E-09 3.2E-14 124.8 15.0 198 391-608 168-389 (457)
63 PRK11034 clpA ATP-dependent Cl 99.0 1.3E-09 2.9E-14 131.2 14.3 152 345-506 447-608 (758)
64 PRK15429 formate hydrogenlyase 99.0 1E-09 2.2E-14 132.5 12.9 208 355-592 375-609 (686)
65 CHL00176 ftsH cell division pr 99.0 1.3E-09 2.8E-14 129.1 13.5 214 356-612 183-423 (638)
66 PRK15115 response regulator Gl 99.0 2.3E-09 5E-14 122.8 14.8 197 390-607 158-379 (444)
67 TIGR01241 FtsH_fam ATP-depende 99.0 2.2E-09 4.9E-14 124.7 14.1 180 391-613 90-296 (495)
68 PRK10923 glnG nitrogen regulat 99.0 2.7E-09 5.9E-14 123.1 14.4 200 389-609 161-385 (469)
69 CHL00195 ycf46 Ycf46; Provisio 99.0 2.8E-09 6E-14 122.7 14.1 210 355-614 227-465 (489)
70 TIGR01242 26Sp45 26S proteasom 99.0 1.7E-09 3.8E-14 120.8 11.1 179 391-611 158-362 (364)
71 KOG0731 AAA+-type ATPase conta 99.0 3.2E-09 7E-14 124.9 13.7 204 331-611 320-552 (774)
72 KOG0730 AAA+-type ATPase [Post 99.0 1.9E-09 4E-14 123.6 11.1 217 357-618 435-680 (693)
73 PTZ00454 26S protease regulato 99.0 4.1E-09 8.9E-14 118.7 13.0 183 391-615 181-389 (398)
74 COG3283 TyrR Transcriptional r 99.0 4.9E-09 1.1E-13 112.2 12.6 176 391-585 229-425 (511)
75 PRK14962 DNA polymerase III su 98.9 1.5E-08 3.2E-13 116.5 16.7 213 347-611 5-241 (472)
76 COG0465 HflB ATP-dependent Zn 98.9 3.6E-09 7.7E-14 122.5 11.3 202 331-612 159-390 (596)
77 PRK10787 DNA-binding ATP-depen 98.9 1.2E-08 2.7E-13 123.7 16.4 194 350-559 316-536 (784)
78 PTZ00361 26 proteosome regulat 98.9 5E-09 1.1E-13 119.0 11.8 184 390-615 218-427 (438)
79 TIGR02639 ClpA ATP-dependent C 98.9 1.3E-08 2.9E-13 123.5 15.9 149 346-506 444-604 (731)
80 PRK10365 transcriptional regul 98.9 1E-08 2.3E-13 117.1 14.0 197 391-607 164-384 (441)
81 COG3284 AcoR Transcriptional a 98.9 3.9E-09 8.4E-14 121.2 10.1 187 387-592 334-540 (606)
82 PF07724 AAA_2: AAA domain (Cd 98.9 1.7E-09 3.6E-14 108.2 6.3 111 390-506 4-130 (171)
83 KOG0738 AAA+-type ATPase [Post 98.9 1.1E-08 2.4E-13 110.8 12.4 213 357-617 213-474 (491)
84 KOG0736 Peroxisome assembly fa 98.9 5.2E-09 1.1E-13 121.2 10.5 144 357-517 673-841 (953)
85 COG1219 ClpX ATP-dependent pro 98.9 2E-09 4.2E-14 113.9 6.3 157 350-512 55-238 (408)
86 TIGR01818 ntrC nitrogen regula 98.9 1.7E-08 3.6E-13 116.3 14.3 200 390-609 158-381 (463)
87 KOG0733 Nuclear AAA ATPase (VC 98.9 7E-09 1.5E-13 117.5 10.2 221 357-618 512-775 (802)
88 CHL00206 ycf2 Ycf2; Provisiona 98.9 1.4E-08 3E-13 127.7 13.0 189 391-611 1632-1876(2281)
89 PRK13341 recombination factor 98.9 2.5E-08 5.4E-13 119.7 14.9 198 356-609 28-244 (725)
90 PLN03025 replication factor C 98.8 4.4E-08 9.6E-13 107.6 15.6 200 357-608 14-219 (319)
91 PRK13342 recombination factor 98.8 4.1E-08 8.9E-13 111.7 15.1 196 357-611 13-218 (413)
92 TIGR00763 lon ATP-dependent pr 98.8 1.1E-08 2.3E-13 125.0 10.6 197 348-559 312-535 (775)
93 PF12775 AAA_7: P-loop contain 98.8 1.6E-08 3.4E-13 108.6 10.6 196 391-588 35-251 (272)
94 COG0466 Lon ATP-dependent Lon 98.8 1.9E-08 4.2E-13 116.4 11.9 194 350-560 317-539 (782)
95 KOG0733 Nuclear AAA ATPase (VC 98.8 1.5E-08 3.2E-13 114.9 10.7 162 391-594 225-413 (802)
96 TIGR01243 CDC48 AAA family ATP 98.8 2.1E-08 4.6E-13 121.9 12.8 217 356-617 453-715 (733)
97 TIGR03346 chaperone_ClpB ATP-d 98.8 6.9E-08 1.5E-12 119.0 16.2 147 347-506 556-718 (852)
98 smart00763 AAA_PrkA PrkA AAA d 98.8 1.8E-08 3.8E-13 110.8 9.6 60 446-507 229-288 (361)
99 KOG0652 26S proteasome regulat 98.8 1.8E-08 3.8E-13 103.9 8.8 181 387-613 203-413 (424)
100 PRK14956 DNA polymerase III su 98.8 1.8E-07 3.8E-12 106.7 17.8 218 346-611 8-245 (484)
101 PRK14961 DNA polymerase III su 98.8 2E-07 4.4E-12 104.2 17.9 209 354-611 14-243 (363)
102 TIGR00390 hslU ATP-dependent p 98.8 6.8E-08 1.5E-12 107.8 13.7 67 350-418 6-76 (441)
103 KOG2028 ATPase related to the 98.7 4.6E-08 9.9E-13 105.1 10.7 135 329-485 114-254 (554)
104 PRK12402 replication factor C 98.7 4.2E-07 9.1E-12 100.0 18.3 206 354-610 13-247 (337)
105 TIGR02928 orc1/cdc6 family rep 98.7 2.4E-07 5.2E-12 103.3 16.5 230 356-614 15-276 (365)
106 PRK05201 hslU ATP-dependent pr 98.7 2.3E-08 5E-13 111.5 8.1 69 348-418 7-79 (443)
107 COG0464 SpoVK ATPases of the A 98.7 7.5E-08 1.6E-12 112.1 12.8 219 357-616 243-487 (494)
108 COG1224 TIP49 DNA helicase TIP 98.7 3.6E-07 7.9E-12 98.4 16.4 136 455-619 293-439 (450)
109 PRK14949 DNA polymerase III su 98.7 3.8E-07 8.3E-12 109.7 18.3 211 348-610 8-242 (944)
110 PRK10733 hflB ATP-dependent me 98.7 8.7E-08 1.9E-12 114.6 12.8 178 391-613 187-393 (644)
111 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.1E-07 4.6E-12 96.5 13.9 174 391-609 40-225 (226)
112 PRK00440 rfc replication facto 98.7 2.2E-07 4.9E-12 101.3 14.7 200 357-609 18-223 (319)
113 PRK14958 DNA polymerase III su 98.7 3.7E-07 8E-12 106.2 16.9 203 355-610 15-242 (509)
114 PRK14960 DNA polymerase III su 98.7 2.2E-07 4.7E-12 108.8 14.7 206 353-610 12-241 (702)
115 COG4650 RtcR Sigma54-dependent 98.7 5.1E-08 1.1E-12 102.0 8.5 213 386-617 205-448 (531)
116 PRK00411 cdc6 cell division co 98.7 3.2E-07 7E-12 103.4 15.7 226 354-613 28-283 (394)
117 cd00009 AAA The AAA+ (ATPases 98.7 6.7E-08 1.4E-12 91.2 8.3 127 360-507 2-131 (151)
118 TIGR02639 ClpA ATP-dependent C 98.7 1.4E-07 2.9E-12 114.8 12.9 220 349-612 175-429 (731)
119 COG1067 LonB Predicted ATP-dep 98.7 2.1E-07 4.6E-12 109.7 14.0 216 391-612 133-399 (647)
120 KOG0737 AAA+-type ATPase [Post 98.7 2E-08 4.4E-13 108.6 4.9 203 357-589 93-308 (386)
121 PTZ00112 origin recognition co 98.7 3.6E-07 7.7E-12 108.5 15.5 225 357-615 756-1009(1164)
122 PRK07003 DNA polymerase III su 98.6 4.4E-07 9.6E-12 107.3 16.3 212 355-614 15-246 (830)
123 PRK11331 5-methylcytosine-spec 98.6 2E-07 4.4E-12 105.1 12.8 136 356-507 175-336 (459)
124 TIGR02688 conserved hypothetic 98.6 3E-07 6.5E-12 102.6 13.9 207 390-614 210-435 (449)
125 CHL00095 clpC Clp protease ATP 98.6 1.3E-07 2.8E-12 116.3 11.9 148 347-506 500-662 (821)
126 COG0542 clpA ATP-binding subun 98.6 1.9E-07 4E-12 111.1 12.2 141 346-506 481-644 (786)
127 PRK06645 DNA polymerase III su 98.6 5.1E-07 1.1E-11 104.5 14.8 217 349-610 14-254 (507)
128 PRK14955 DNA polymerase III su 98.6 6.1E-07 1.3E-11 101.6 15.0 218 348-609 4-254 (397)
129 PRK14957 DNA polymerase III su 98.6 8.8E-07 1.9E-11 103.3 16.6 172 355-556 15-208 (546)
130 PRK12323 DNA polymerase III su 98.6 2.6E-07 5.6E-12 108.0 11.8 207 354-613 14-250 (700)
131 KOG2004 Mitochondrial ATP-depe 98.6 3.1E-07 6.7E-12 106.1 12.1 191 353-560 408-627 (906)
132 TIGR03345 VI_ClpV1 type VI sec 98.6 2E-07 4.3E-12 114.5 11.2 149 347-507 557-720 (852)
133 PRK08451 DNA polymerase III su 98.6 1.6E-06 3.4E-11 100.7 17.6 171 354-556 12-206 (535)
134 PRK08691 DNA polymerase III su 98.6 1.2E-06 2.6E-11 103.5 16.6 208 357-612 17-244 (709)
135 PRK14963 DNA polymerase III su 98.6 1.2E-06 2.5E-11 101.8 16.2 182 347-556 5-205 (504)
136 PRK14964 DNA polymerase III su 98.5 8.8E-07 1.9E-11 101.9 14.9 203 355-610 12-239 (491)
137 COG5271 MDN1 AAA ATPase contai 98.5 1.3E-07 2.9E-12 115.0 8.3 189 390-584 889-1089(4600)
138 KOG0727 26S proteasome regulat 98.5 2.7E-07 5.9E-12 94.9 9.1 179 391-611 191-395 (408)
139 PRK08903 DnaA regulatory inact 98.5 2E-06 4.3E-11 89.7 15.9 172 391-610 44-224 (227)
140 KOG0739 AAA+-type ATPase [Post 98.5 2.3E-07 5.1E-12 97.5 8.8 131 357-514 134-294 (439)
141 PRK05896 DNA polymerase III su 98.5 8.1E-07 1.8E-11 103.9 13.7 213 346-610 6-242 (605)
142 PRK14952 DNA polymerase III su 98.5 1.7E-06 3.6E-11 101.8 15.5 181 347-556 4-207 (584)
143 PRK07994 DNA polymerase III su 98.5 2.3E-06 4.9E-11 101.4 16.7 173 354-556 14-208 (647)
144 TIGR02397 dnaX_nterm DNA polym 98.5 1.8E-06 3.8E-11 95.9 14.8 206 355-610 13-240 (355)
145 PRK05563 DNA polymerase III su 98.5 3.4E-06 7.3E-11 99.4 17.6 181 347-556 7-208 (559)
146 PRK10865 protein disaggregatio 98.5 4.6E-07 9.9E-12 111.6 10.3 149 347-506 559-721 (857)
147 PRK14959 DNA polymerase III su 98.5 4.1E-06 8.9E-11 98.5 17.5 207 356-611 16-243 (624)
148 KOG2545 Conserved membrane pro 98.4 2E-05 4.3E-10 86.2 21.0 242 361-617 283-540 (543)
149 PRK07764 DNA polymerase III su 98.4 2.4E-06 5.1E-11 104.2 15.6 171 354-556 13-209 (824)
150 KOG0745 Putative ATP-dependent 98.4 4.7E-07 1E-11 99.5 8.2 114 390-506 227-358 (564)
151 PRK14969 DNA polymerase III su 98.4 6.8E-06 1.5E-10 96.2 18.4 202 356-609 16-241 (527)
152 PF12774 AAA_6: Hydrolytic ATP 98.4 2.7E-06 5.8E-11 89.2 13.5 184 392-593 35-228 (231)
153 PRK14950 DNA polymerase III su 98.4 4.6E-06 1E-10 99.0 17.0 182 347-556 7-209 (585)
154 PRK14951 DNA polymerase III su 98.4 5.3E-06 1.1E-10 98.0 16.7 201 356-609 16-246 (618)
155 PRK06305 DNA polymerase III su 98.4 8.8E-06 1.9E-10 93.6 18.1 215 347-609 4-243 (451)
156 TIGR01243 CDC48 AAA family ATP 98.4 1.4E-06 3.1E-11 106.1 12.1 98 391-507 214-325 (733)
157 PRK14965 DNA polymerase III su 98.4 5.7E-06 1.2E-10 97.9 16.6 170 355-556 15-208 (576)
158 TIGR03689 pup_AAA proteasome A 98.4 2.6E-06 5.7E-11 98.4 13.2 27 391-417 218-244 (512)
159 PRK08084 DNA replication initi 98.4 5E-06 1.1E-10 87.5 14.0 176 391-611 47-235 (235)
160 PRK06647 DNA polymerase III su 98.3 7.1E-06 1.5E-10 96.5 16.0 202 357-609 17-241 (563)
161 PRK14953 DNA polymerase III su 98.3 8.3E-06 1.8E-10 94.4 16.4 205 355-609 15-241 (486)
162 COG5271 MDN1 AAA ATPase contai 98.3 3.3E-06 7.2E-11 103.4 13.0 201 391-594 1545-1758(4600)
163 PF00004 AAA: ATPase family as 98.3 1.8E-07 3.8E-12 88.0 1.7 98 392-506 1-112 (132)
164 KOG0989 Replication factor C, 98.3 4.7E-06 1E-10 88.6 12.2 108 357-479 37-155 (346)
165 KOG1051 Chaperone HSP104 and r 98.3 1.2E-06 2.6E-11 105.6 8.7 148 346-507 552-712 (898)
166 PRK14970 DNA polymerase III su 98.3 2.2E-05 4.8E-10 88.0 18.0 207 357-610 18-231 (367)
167 PRK07133 DNA polymerase III su 98.3 1E-05 2.3E-10 96.5 15.9 204 357-609 19-240 (725)
168 PRK14954 DNA polymerase III su 98.3 8E-06 1.7E-10 96.8 14.9 173 354-557 14-217 (620)
169 COG1474 CDC6 Cdc6-related prot 98.3 4.7E-06 1E-10 93.1 12.2 200 391-613 44-266 (366)
170 TIGR03345 VI_ClpV1 type VI sec 98.3 4.4E-06 9.5E-11 102.8 12.9 53 350-414 181-233 (852)
171 KOG0728 26S proteasome regulat 98.3 2.6E-06 5.7E-11 87.7 8.7 177 391-612 183-388 (404)
172 PRK09111 DNA polymerase III su 98.3 2E-05 4.2E-10 93.3 17.1 172 357-556 25-221 (598)
173 PF13337 Lon_2: Putative ATP-d 98.3 2E-05 4.4E-10 88.7 16.2 250 327-619 167-438 (457)
174 PRK04195 replication factor C 98.2 1.6E-05 3.4E-10 92.4 15.8 168 357-556 15-190 (482)
175 PRK11034 clpA ATP-dependent Cl 98.2 8E-06 1.7E-10 98.9 12.9 211 357-611 187-432 (758)
176 PRK06893 DNA replication initi 98.2 1.3E-05 2.9E-10 83.9 12.6 175 391-610 41-228 (229)
177 KOG0735 AAA+-type ATPase [Post 98.2 5.1E-06 1.1E-10 96.2 9.9 145 357-517 668-833 (952)
178 PRK06620 hypothetical protein; 98.2 2.7E-05 5.8E-10 80.8 14.3 161 391-609 46-213 (214)
179 PHA02544 44 clamp loader, smal 98.2 1.6E-05 3.5E-10 87.0 13.3 117 357-506 22-141 (316)
180 CHL00095 clpC Clp protease ATP 98.2 8.7E-06 1.9E-10 100.4 12.3 47 356-414 179-225 (821)
181 KOG0726 26S proteasome regulat 98.2 1.7E-06 3.7E-11 90.8 4.9 186 391-615 221-429 (440)
182 PLN00020 ribulose bisphosphate 98.2 2.9E-06 6.3E-11 93.1 6.7 109 391-506 150-278 (413)
183 KOG0740 AAA+-type ATPase [Post 98.2 2.6E-06 5.7E-11 95.4 6.4 189 355-590 152-354 (428)
184 PRK08727 hypothetical protein; 98.2 2.3E-05 5E-10 82.4 13.1 176 391-611 43-230 (233)
185 KOG1942 DNA helicase, TBP-inte 98.1 4E-05 8.7E-10 80.8 14.5 135 455-618 298-444 (456)
186 TIGR03015 pepcterm_ATPase puta 98.1 5.6E-05 1.2E-09 80.5 16.2 197 391-613 45-267 (269)
187 PRK09087 hypothetical protein; 98.1 2.6E-05 5.6E-10 81.6 12.3 170 391-612 46-222 (226)
188 PRK14971 DNA polymerase III su 98.1 0.0001 2.2E-09 87.9 17.4 171 355-556 16-210 (614)
189 TIGR02653 Lon_rel_chp conserve 98.1 7.7E-05 1.7E-09 87.2 15.8 245 326-612 174-440 (675)
190 PF14532 Sigma54_activ_2: Sigm 98.0 1.1E-05 2.3E-10 77.7 6.8 88 391-506 23-110 (138)
191 TIGR00362 DnaA chromosomal rep 98.0 2.6E-05 5.6E-10 88.7 10.9 178 391-612 138-337 (405)
192 PRK14948 DNA polymerase III su 98.0 7.4E-05 1.6E-09 89.0 15.0 175 355-557 15-211 (620)
193 PRK12422 chromosomal replicati 98.0 4E-05 8.6E-10 88.0 12.0 178 391-611 143-342 (445)
194 PRK07940 DNA polymerase III su 98.0 2E-05 4.3E-10 88.9 9.4 135 354-506 3-158 (394)
195 PRK00149 dnaA chromosomal repl 98.0 2.6E-05 5.6E-10 89.9 10.5 181 391-612 150-349 (450)
196 KOG0991 Replication factor C, 98.0 1.5E-05 3.2E-10 81.8 6.8 112 348-478 19-138 (333)
197 smart00382 AAA ATPases associa 97.9 6.5E-06 1.4E-10 76.6 3.8 109 391-505 4-125 (148)
198 COG2812 DnaX DNA polymerase II 97.9 4.2E-05 9.1E-10 88.2 11.1 212 346-614 6-246 (515)
199 PRK14087 dnaA chromosomal repl 97.9 3.3E-05 7E-10 88.9 10.0 182 391-611 143-347 (450)
200 KOG0729 26S proteasome regulat 97.9 7.6E-06 1.7E-10 85.0 4.2 180 391-612 213-418 (435)
201 PRK10865 protein disaggregatio 97.9 2.3E-05 5E-10 96.8 8.4 50 354-415 176-225 (857)
202 PRK05642 DNA replication initi 97.8 0.00018 4E-09 75.7 12.7 174 391-610 47-233 (234)
203 KOG0730 AAA+-type ATPase [Post 97.8 8.1E-05 1.8E-09 86.3 10.2 194 390-630 219-437 (693)
204 PRK09112 DNA polymerase III su 97.8 0.00015 3.2E-09 80.8 11.8 48 356-414 23-70 (351)
205 KOG0651 26S proteasome regulat 97.8 3.3E-05 7.2E-10 82.2 5.8 100 391-506 168-281 (388)
206 PRK14086 dnaA chromosomal repl 97.8 0.00012 2.7E-09 85.9 11.1 184 391-611 316-514 (617)
207 KOG0743 AAA+-type ATPase [Post 97.8 0.00013 2.9E-09 81.6 10.6 60 392-464 238-297 (457)
208 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00015 3.2E-09 90.0 10.1 49 355-415 172-220 (852)
209 PRK14088 dnaA chromosomal repl 97.6 0.00014 3E-09 83.6 9.1 179 391-612 132-332 (440)
210 KOG0742 AAA+-type ATPase [Post 97.6 5.7E-05 1.2E-09 82.8 5.4 100 391-507 386-496 (630)
211 TIGR00678 holB DNA polymerase 97.6 0.0003 6.5E-09 71.2 9.4 28 452-479 95-122 (188)
212 KOG0732 AAA+-type ATPase conta 97.6 0.00045 9.7E-09 84.6 12.3 175 355-556 264-468 (1080)
213 PHA01747 putative ATP-dependen 97.5 0.00022 4.8E-09 78.0 8.2 143 347-506 150-301 (425)
214 PRK05564 DNA polymerase III su 97.5 0.00067 1.5E-08 74.4 11.9 104 356-479 4-119 (313)
215 KOG0736 Peroxisome assembly fa 97.5 0.0017 3.6E-08 76.7 14.8 233 368-630 412-675 (953)
216 PRK15455 PrkA family serine pr 97.4 0.00033 7.1E-09 81.3 8.2 60 446-507 248-307 (644)
217 PF00308 Bac_DnaA: Bacterial d 97.4 0.00042 9E-09 72.2 8.0 168 391-594 36-218 (219)
218 COG0470 HolB ATPase involved i 97.4 0.00033 7.2E-09 76.5 7.7 122 358-504 3-147 (325)
219 PRK07471 DNA polymerase III su 97.3 0.00063 1.4E-08 76.2 9.1 46 356-413 19-65 (365)
220 PRK06526 transposase; Provisio 97.3 5.9E-05 1.3E-09 80.3 0.8 103 390-508 99-203 (254)
221 KOG0741 AAA+-type ATPase [Post 97.3 0.00042 9.1E-09 78.4 7.1 25 391-415 258-282 (744)
222 COG5245 DYN1 Dynein, heavy cha 97.3 0.00076 1.6E-08 83.4 9.2 223 391-619 1496-1746(3164)
223 PRK08116 hypothetical protein; 97.2 0.00011 2.3E-09 79.0 1.4 97 391-505 116-220 (268)
224 TIGR00602 rad24 checkpoint pro 97.2 0.0026 5.5E-08 75.9 12.5 64 346-416 74-137 (637)
225 PF05673 DUF815: Protein of un 97.2 0.0007 1.5E-08 71.0 6.7 114 358-506 29-151 (249)
226 PRK12377 putative replication 97.2 0.00014 3E-09 77.1 1.4 101 391-505 103-205 (248)
227 COG1220 HslU ATP-dependent pro 97.2 0.00026 5.7E-09 76.3 3.4 68 350-418 9-79 (444)
228 PF00910 RNA_helicase: RNA hel 97.2 0.0005 1.1E-08 63.3 4.7 99 392-504 1-106 (107)
229 PRK08181 transposase; Validate 97.1 0.00012 2.7E-09 78.5 0.0 102 391-508 108-211 (269)
230 PF05272 VirE: Virulence-assoc 97.1 0.00065 1.4E-08 69.7 5.3 98 389-507 52-151 (198)
231 KOG0744 AAA+-type ATPase [Post 97.1 0.0004 8.7E-09 74.5 3.4 23 391-413 179-201 (423)
232 PF13177 DNA_pol3_delta2: DNA 97.0 0.0011 2.3E-08 65.9 6.1 106 360-480 1-129 (162)
233 PRK08058 DNA polymerase III su 97.0 0.0015 3.3E-08 72.2 7.8 107 357-479 6-136 (329)
234 KOG1808 AAA ATPase containing 97.0 0.00055 1.2E-08 88.1 4.7 116 391-507 442-562 (1856)
235 PF13335 Mg_chelatase_2: Magne 97.0 0.0032 7E-08 57.0 8.3 54 545-611 42-95 (96)
236 PF13654 AAA_32: AAA domain; P 97.0 0.0018 3.9E-08 75.5 7.9 180 425-612 299-506 (509)
237 COG1484 DnaC DNA replication p 96.9 0.00027 5.8E-09 75.3 0.8 131 358-511 81-214 (254)
238 PF13148 DUF3987: Protein of u 96.9 0.011 2.4E-07 66.3 13.6 165 454-618 150-366 (378)
239 PRK09183 transposase/IS protei 96.8 0.0003 6.4E-09 75.2 0.3 101 391-508 104-208 (259)
240 COG0593 DnaA ATPase involved i 96.8 0.0073 1.6E-07 68.1 11.2 186 391-617 115-318 (408)
241 PRK04132 replication factor C 96.8 0.0062 1.3E-07 74.6 10.9 176 391-609 566-751 (846)
242 PRK08939 primosomal protein Dn 96.7 0.00094 2E-08 73.1 3.2 24 391-414 158-181 (306)
243 PRK07399 DNA polymerase III su 96.7 0.0039 8.5E-08 68.5 7.9 48 355-413 3-50 (314)
244 PF03969 AFG1_ATPase: AFG1-lik 96.7 0.0019 4.1E-08 72.3 5.4 120 391-540 64-190 (362)
245 PRK06921 hypothetical protein; 96.7 0.00059 1.3E-08 73.2 1.1 24 391-414 119-142 (266)
246 PF01695 IstB_IS21: IstB-like 96.7 0.00025 5.4E-09 71.5 -1.9 101 391-507 49-151 (178)
247 PRK06835 DNA replication prote 96.6 0.0006 1.3E-08 75.3 0.8 102 391-505 185-288 (329)
248 COG2607 Predicted ATPase (AAA+ 96.6 0.028 6E-07 58.7 12.6 116 357-506 61-184 (287)
249 COG0542 clpA ATP-binding subun 96.6 0.014 3E-07 70.5 11.9 47 354-413 169-215 (786)
250 PHA02774 E1; Provisional 96.6 0.014 3E-07 68.2 11.1 98 391-507 436-534 (613)
251 PRK07952 DNA replication prote 96.5 0.0013 2.9E-08 69.5 2.5 97 391-504 101-203 (244)
252 PF03266 NTPase_1: NTPase; In 96.5 0.0033 7.2E-08 62.8 5.0 23 391-413 1-23 (168)
253 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.0032 6.9E-08 69.4 5.2 60 446-507 226-285 (358)
254 KOG2680 DNA helicase TIP49, TB 96.4 0.042 9.2E-07 58.8 12.9 171 391-618 254-435 (454)
255 COG3854 SpoIIIAA ncharacterize 96.4 0.0048 1E-07 63.7 5.7 28 388-415 136-163 (308)
256 PF13401 AAA_22: AAA domain; P 96.3 0.00069 1.5E-08 63.7 -1.2 23 391-413 6-28 (131)
257 KOG0990 Replication factor C, 96.2 0.0074 1.6E-07 65.1 5.9 88 391-481 64-159 (360)
258 KOG2170 ATPase of the AAA+ sup 96.2 0.0036 7.8E-08 66.9 3.3 124 347-479 73-204 (344)
259 KOG1969 DNA replication checkp 96.0 0.018 4E-07 67.9 8.3 83 391-478 328-412 (877)
260 PF06309 Torsin: Torsin; Inte 95.9 0.0078 1.7E-07 57.0 4.0 61 347-412 16-76 (127)
261 KOG1514 Origin recognition com 95.7 0.09 2E-06 62.2 12.4 236 351-616 391-659 (767)
262 COG4930 Predicted ATP-dependen 95.6 0.11 2.4E-06 57.6 11.4 204 389-609 225-445 (683)
263 PRK05707 DNA polymerase III su 95.5 0.02 4.3E-07 63.4 5.7 27 453-479 106-132 (328)
264 PF13604 AAA_30: AAA domain; P 95.4 0.012 2.6E-07 60.2 3.4 89 391-479 20-119 (196)
265 PF01443 Viral_helicase1: Vira 95.4 0.036 7.8E-07 57.6 6.9 81 392-475 1-84 (234)
266 TIGR01447 recD exodeoxyribonuc 95.3 0.045 9.7E-07 65.2 8.0 46 352-412 138-183 (586)
267 PRK14532 adenylate kinase; Pro 95.2 0.018 3.9E-07 58.1 3.9 30 391-420 2-31 (188)
268 PF13671 AAA_33: AAA domain; P 95.2 0.015 3.2E-07 55.6 3.1 24 392-415 2-25 (143)
269 PF13207 AAA_17: AAA domain; P 95.2 0.011 2.5E-07 54.7 2.2 27 392-418 2-28 (121)
270 PRK10536 hypothetical protein; 95.1 0.078 1.7E-06 56.4 8.5 25 453-477 176-200 (262)
271 PF13173 AAA_14: AAA domain 95.1 0.029 6.2E-07 53.1 4.8 81 391-480 4-87 (128)
272 PF09848 DUF2075: Uncharacteri 95.0 0.016 3.5E-07 64.8 3.2 92 391-482 3-120 (352)
273 PRK04296 thymidine kinase; Pro 95.0 0.046 9.9E-07 55.7 6.2 27 455-481 80-106 (190)
274 PF06068 TIP49: TIP49 C-termin 95.0 0.025 5.3E-07 62.8 4.3 53 355-416 23-77 (398)
275 PRK13947 shikimate kinase; Pro 95.0 0.023 5E-07 56.2 3.9 31 391-421 3-33 (171)
276 COG0563 Adk Adenylate kinase a 94.9 0.02 4.4E-07 57.7 3.4 32 391-422 2-33 (178)
277 PRK08699 DNA polymerase III su 94.9 0.042 9.1E-07 60.8 6.1 28 453-480 113-140 (325)
278 COG1618 Predicted nucleotide k 94.9 0.054 1.2E-06 53.4 5.9 27 389-415 5-31 (179)
279 PRK08118 topology modulation p 94.8 0.025 5.3E-07 56.4 3.6 29 391-419 3-31 (167)
280 PF00519 PPV_E1_C: Papillomavi 94.8 0.19 4.1E-06 56.1 10.6 95 391-507 264-362 (432)
281 TIGR02768 TraA_Ti Ti-type conj 94.7 0.034 7.4E-07 68.2 5.3 83 391-478 370-464 (744)
282 PF03215 Rad17: Rad17 cell cyc 94.7 0.11 2.4E-06 61.0 9.1 29 391-419 47-75 (519)
283 PTZ00088 adenylate kinase 1; P 94.7 0.033 7.2E-07 58.5 4.3 33 388-420 5-37 (229)
284 PHA00729 NTP-binding motif con 94.7 0.025 5.4E-07 59.1 3.3 24 391-414 19-42 (226)
285 cd00464 SK Shikimate kinase (S 94.6 0.029 6.4E-07 54.2 3.5 29 391-419 1-29 (154)
286 PRK10875 recD exonuclease V su 94.6 0.077 1.7E-06 63.5 7.6 37 361-412 154-190 (615)
287 PF05621 TniB: Bacterial TniB 94.6 0.35 7.5E-06 52.6 11.8 54 354-415 32-87 (302)
288 PRK00131 aroK shikimate kinase 94.5 0.033 7.1E-07 54.9 3.7 29 391-419 6-34 (175)
289 PRK03839 putative kinase; Prov 94.5 0.033 7.2E-07 55.8 3.6 30 391-420 2-31 (180)
290 PRK14530 adenylate kinase; Pro 94.5 0.034 7.4E-07 57.6 3.8 29 391-419 5-33 (215)
291 PF13191 AAA_16: AAA ATPase do 94.5 0.03 6.5E-07 55.6 3.2 24 391-414 26-49 (185)
292 PRK07261 topology modulation p 94.4 0.042 9E-07 55.0 4.0 27 391-417 2-28 (171)
293 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.04 8.7E-07 55.1 3.8 27 392-418 2-28 (183)
294 PRK00625 shikimate kinase; Pro 94.3 0.039 8.5E-07 55.4 3.6 29 391-419 2-30 (173)
295 PRK13949 shikimate kinase; Pro 94.1 0.048 1E-06 54.5 3.8 29 391-419 3-31 (169)
296 PRK08769 DNA polymerase III su 94.1 0.17 3.7E-06 55.8 8.4 25 455-479 115-139 (319)
297 PF05970 PIF1: PIF1-like helic 94.1 0.098 2.1E-06 58.8 6.6 88 391-478 24-127 (364)
298 KOG3347 Predicted nucleotide k 94.0 0.042 9E-07 53.4 3.0 31 390-420 8-38 (176)
299 cd01428 ADK Adenylate kinase ( 93.9 0.052 1.1E-06 54.6 3.8 28 391-418 1-28 (194)
300 PRK14531 adenylate kinase; Pro 93.9 0.053 1.2E-06 54.7 3.8 29 391-419 4-32 (183)
301 cd01131 PilT Pilus retraction 93.9 0.12 2.7E-06 52.8 6.4 24 391-414 3-26 (198)
302 KOG2227 Pre-initiation complex 93.8 0.3 6.5E-06 55.5 9.5 136 350-507 143-300 (529)
303 cd01130 VirB11-like_ATPase Typ 93.8 0.099 2.1E-06 52.9 5.4 25 391-415 27-51 (186)
304 PRK13900 type IV secretion sys 93.8 0.077 1.7E-06 58.9 5.0 25 391-415 162-186 (332)
305 TIGR01448 recD_rel helicase, p 93.8 0.13 2.8E-06 63.0 7.3 85 391-479 340-442 (720)
306 PRK06217 hypothetical protein; 93.7 0.067 1.5E-06 53.9 4.1 29 391-419 3-31 (183)
307 KOG3595 Dyneins, heavy chain [ 93.7 0.092 2E-06 68.7 6.3 190 391-586 129-339 (1395)
308 COG4619 ABC-type uncharacteriz 93.7 0.084 1.8E-06 52.4 4.4 25 391-415 31-55 (223)
309 PF13238 AAA_18: AAA domain; P 93.6 0.044 9.5E-07 50.9 2.4 22 392-413 1-22 (129)
310 TIGR01360 aden_kin_iso1 adenyl 93.4 0.056 1.2E-06 54.1 3.0 28 391-418 5-32 (188)
311 PRK10078 ribose 1,5-bisphospho 93.4 0.074 1.6E-06 53.7 3.9 29 391-419 4-32 (186)
312 PRK06762 hypothetical protein; 93.4 0.07 1.5E-06 52.6 3.6 27 391-417 4-30 (166)
313 PRK14526 adenylate kinase; Pro 93.4 0.073 1.6E-06 55.2 3.8 29 391-419 2-30 (211)
314 cd02021 GntK Gluconate kinase 93.4 0.07 1.5E-06 51.6 3.5 26 392-417 2-27 (150)
315 PRK05057 aroK shikimate kinase 93.4 0.083 1.8E-06 52.9 4.1 30 391-420 6-35 (172)
316 TIGR01313 therm_gnt_kin carboh 93.3 0.067 1.4E-06 52.6 3.2 24 392-415 1-24 (163)
317 COG3267 ExeA Type II secretory 93.3 0.28 6.2E-06 51.8 7.8 191 391-607 53-268 (269)
318 PRK02496 adk adenylate kinase; 93.2 0.072 1.6E-06 53.5 3.4 29 391-419 3-31 (184)
319 PF13086 AAA_11: AAA domain; P 93.2 0.095 2.1E-06 53.7 4.4 22 392-413 20-41 (236)
320 cd02019 NK Nucleoside/nucleoti 93.2 0.074 1.6E-06 44.9 2.9 22 392-413 2-23 (69)
321 PRK14528 adenylate kinase; Pro 93.2 0.084 1.8E-06 53.5 3.8 29 391-419 3-31 (186)
322 TIGR01351 adk adenylate kinase 93.1 0.081 1.7E-06 54.6 3.6 27 392-418 2-28 (210)
323 cd00227 CPT Chloramphenicol (C 93.0 0.077 1.7E-06 53.0 3.3 27 391-417 4-30 (175)
324 TIGR01613 primase_Cterm phage/ 93.0 0.64 1.4E-05 50.9 10.6 105 391-507 78-183 (304)
325 PRK06871 DNA polymerase III su 92.9 0.38 8.2E-06 53.2 8.7 26 454-479 108-133 (325)
326 cd01120 RecA-like_NTPases RecA 92.9 0.058 1.2E-06 51.9 2.1 24 391-414 1-24 (165)
327 cd02020 CMPK Cytidine monophos 92.9 0.095 2.1E-06 50.0 3.5 30 392-421 2-31 (147)
328 PLN02200 adenylate kinase fami 92.9 0.1 2.2E-06 55.0 4.0 30 390-419 44-73 (234)
329 TIGR00150 HI0065_YjeE ATPase, 92.8 0.17 3.8E-06 48.6 5.2 25 391-415 24-48 (133)
330 cd03222 ABC_RNaseL_inhibitor T 92.7 0.09 2E-06 53.0 3.2 82 391-478 27-115 (177)
331 PF13245 AAA_19: Part of AAA d 92.7 0.12 2.5E-06 44.8 3.4 22 392-413 13-35 (76)
332 PF08477 Miro: Miro-like prote 92.7 0.094 2E-06 48.2 3.1 25 391-415 1-25 (119)
333 PRK13851 type IV secretion sys 92.6 0.15 3.4E-06 56.7 5.2 25 391-415 164-188 (344)
334 PRK13764 ATPase; Provisional 92.6 0.16 3.4E-06 60.5 5.5 25 391-415 259-283 (602)
335 COG1126 GlnQ ABC-type polar am 92.6 0.037 8E-07 57.0 0.3 22 391-412 30-51 (240)
336 COG1116 TauB ABC-type nitrate/ 92.6 0.089 1.9E-06 55.4 3.1 25 391-415 31-55 (248)
337 PRK00279 adk adenylate kinase; 92.6 0.12 2.5E-06 53.6 3.9 29 391-419 2-30 (215)
338 TIGR01618 phage_P_loop phage n 92.6 0.072 1.6E-06 55.6 2.4 24 387-410 10-33 (220)
339 PRK07993 DNA polymerase III su 92.5 0.13 2.9E-06 57.1 4.5 27 453-479 108-134 (334)
340 TIGR01420 pilT_fam pilus retra 92.5 0.26 5.7E-06 54.9 6.9 24 391-414 124-147 (343)
341 PF05729 NACHT: NACHT domain 92.5 0.089 1.9E-06 51.0 2.7 21 392-412 3-23 (166)
342 cd01129 PulE-GspE PulE/GspE Th 92.4 0.56 1.2E-05 50.4 9.0 89 391-482 82-176 (264)
343 PRK13946 shikimate kinase; Pro 92.4 0.13 2.8E-06 52.0 3.9 32 389-420 10-41 (184)
344 PRK14529 adenylate kinase; Pro 92.4 0.1 2.2E-06 54.7 3.1 27 391-417 2-28 (223)
345 COG0703 AroK Shikimate kinase 92.3 0.12 2.5E-06 51.8 3.3 29 391-419 4-32 (172)
346 TIGR02322 phosphon_PhnN phosph 92.3 0.11 2.3E-06 52.0 3.1 24 391-414 3-26 (179)
347 PRK13889 conjugal transfer rel 92.1 0.2 4.3E-06 62.9 5.8 85 391-478 364-458 (988)
348 PRK08233 hypothetical protein; 92.1 0.12 2.5E-06 51.5 3.1 25 391-415 5-29 (182)
349 PRK14527 adenylate kinase; Pro 92.1 0.12 2.5E-06 52.5 3.2 26 391-416 8-33 (191)
350 PRK03731 aroL shikimate kinase 92.0 0.15 3.3E-06 50.5 3.8 29 391-419 4-32 (171)
351 cd00267 ABC_ATPase ABC (ATP-bi 92.0 0.2 4.2E-06 49.0 4.5 88 391-478 27-124 (157)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.9 0.15 3.2E-06 49.5 3.5 82 391-479 28-115 (144)
353 PLN02459 probable adenylate ki 91.9 0.15 3.2E-06 54.6 3.8 29 390-418 30-58 (261)
354 TIGR02788 VirB11 P-type DNA tr 91.8 0.22 4.8E-06 54.7 5.2 25 391-415 146-170 (308)
355 COG1120 FepC ABC-type cobalami 91.8 0.05 1.1E-06 57.9 0.1 25 391-415 30-54 (258)
356 KOG2383 Predicted ATPase [Gene 91.8 0.085 1.8E-06 58.7 1.9 103 391-507 116-235 (467)
357 TIGR03263 guanyl_kin guanylate 91.8 0.13 2.8E-06 51.3 3.0 24 392-415 4-27 (180)
358 PF13521 AAA_28: AAA domain; P 91.7 0.12 2.6E-06 50.8 2.8 21 392-412 2-22 (163)
359 PHA02530 pseT polynucleotide k 91.7 0.16 3.4E-06 55.2 3.7 25 391-415 4-28 (300)
360 PRK13948 shikimate kinase; Pro 91.6 0.18 4E-06 51.0 4.0 30 391-420 12-41 (182)
361 cd00071 GMPK Guanosine monopho 91.4 0.21 4.5E-06 48.1 3.9 25 392-416 2-26 (137)
362 PLN02674 adenylate kinase 91.4 0.19 4E-06 53.4 3.8 27 391-417 33-59 (244)
363 PF01637 Arch_ATPase: Archaeal 91.4 0.2 4.4E-06 51.3 4.0 25 391-415 22-46 (234)
364 PRK00300 gmk guanylate kinase; 91.4 0.15 3.3E-06 52.0 3.1 24 391-414 7-30 (205)
365 PRK06547 hypothetical protein; 91.3 0.32 6.9E-06 48.8 5.3 27 391-417 17-43 (172)
366 COG1102 Cmk Cytidylate kinase 91.3 0.16 3.4E-06 50.2 3.0 31 392-422 3-33 (179)
367 PF06048 DUF927: Domain of unk 91.3 0.19 4.1E-06 54.6 3.9 71 391-477 195-266 (286)
368 TIGR02782 TrbB_P P-type conjug 91.3 0.27 5.8E-06 53.8 5.0 25 391-415 134-158 (299)
369 PRK06964 DNA polymerase III su 91.2 0.36 7.8E-06 53.8 6.1 26 454-479 133-158 (342)
370 cd04177 RSR1 RSR1 subgroup. R 91.2 0.17 3.6E-06 49.7 3.2 24 389-412 1-24 (168)
371 PRK13826 Dtr system oriT relax 91.2 0.3 6.5E-06 61.8 5.9 84 391-479 399-494 (1102)
372 COG1936 Predicted nucleotide k 91.2 0.2 4.4E-06 49.9 3.6 21 391-411 2-22 (180)
373 PRK05439 pantothenate kinase; 91.2 0.22 4.9E-06 54.6 4.3 80 326-414 26-111 (311)
374 PF13555 AAA_29: P-loop contai 91.2 0.19 4.2E-06 41.7 2.9 25 388-413 23-47 (62)
375 PRK06090 DNA polymerase III su 91.2 0.85 1.8E-05 50.4 8.8 26 454-479 109-134 (319)
376 TIGR00231 small_GTP small GTP- 91.1 0.17 3.7E-06 47.6 3.0 23 390-412 2-24 (161)
377 PF00437 T2SE: Type II/IV secr 91.1 0.17 3.7E-06 54.1 3.4 26 391-416 129-154 (270)
378 COG3839 MalK ABC-type sugar tr 91.1 0.16 3.5E-06 56.2 3.1 24 391-414 31-54 (338)
379 smart00487 DEXDc DEAD-like hel 90.9 0.23 4.9E-06 48.9 3.8 24 391-414 26-50 (201)
380 PHA02624 large T antigen; Prov 90.8 0.32 7E-06 57.4 5.3 25 391-415 433-457 (647)
381 PF13479 AAA_24: AAA domain 90.7 0.18 3.8E-06 52.3 2.9 26 390-419 4-29 (213)
382 cd04119 RJL RJL (RabJ-Like) su 90.7 0.19 4.1E-06 48.5 2.9 23 390-412 1-23 (168)
383 PF01926 MMR_HSR1: 50S ribosom 90.7 0.17 3.8E-06 46.5 2.5 21 391-411 1-21 (116)
384 PRK03846 adenylylsulfate kinas 90.6 0.21 4.6E-06 51.0 3.3 23 391-413 26-48 (198)
385 PRK04040 adenylate kinase; Pro 90.6 0.23 4.9E-06 50.6 3.5 24 391-414 4-27 (188)
386 cd01878 HflX HflX subfamily. 90.6 0.2 4.3E-06 50.9 3.1 26 387-412 39-64 (204)
387 cd04137 RheB Rheb (Ras Homolog 90.5 0.21 4.5E-06 49.5 3.1 23 390-412 2-24 (180)
388 PRK06851 hypothetical protein; 90.5 0.11 2.5E-06 58.1 1.3 23 391-413 216-238 (367)
389 PRK13833 conjugal transfer pro 90.5 0.33 7.2E-06 53.6 4.9 24 391-414 146-169 (323)
390 PF00005 ABC_tran: ABC transpo 90.5 0.14 3E-06 48.5 1.7 24 391-414 13-36 (137)
391 COG1134 TagH ABC-type polysacc 90.5 0.28 6E-06 51.6 4.0 34 391-424 55-91 (249)
392 PRK04182 cytidylate kinase; Pr 90.4 0.26 5.6E-06 48.8 3.7 29 391-419 2-30 (180)
393 cd02027 APSK Adenosine 5'-phos 90.4 0.18 3.9E-06 49.2 2.5 22 392-413 2-23 (149)
394 PRK01184 hypothetical protein; 90.4 0.24 5.3E-06 49.7 3.5 27 391-418 3-29 (184)
395 smart00175 RAB Rab subfamily o 90.4 0.21 4.5E-06 48.2 2.9 23 390-412 1-23 (164)
396 cd00157 Rho Rho (Ras homology) 90.3 0.21 4.6E-06 48.6 2.9 23 390-412 1-23 (171)
397 cd04124 RabL2 RabL2 subfamily. 90.3 0.21 4.6E-06 48.7 2.9 22 390-411 1-22 (161)
398 TIGR00235 udk uridine kinase. 90.3 0.2 4.4E-06 51.5 2.9 25 391-415 8-32 (207)
399 PRK12339 2-phosphoglycerate ki 90.0 0.28 6.1E-06 50.3 3.6 27 391-417 5-31 (197)
400 cd04138 H_N_K_Ras_like H-Ras/N 90.0 0.25 5.5E-06 47.4 3.1 22 390-411 2-23 (162)
401 cd01867 Rab8_Rab10_Rab13_like 89.9 0.25 5.4E-06 48.4 3.1 23 390-412 4-26 (167)
402 cd00154 Rab Rab family. Rab G 89.9 0.24 5.3E-06 46.9 2.9 22 391-412 2-23 (159)
403 cd03264 ABC_drug_resistance_li 89.9 0.25 5.5E-06 50.7 3.2 24 391-414 27-50 (211)
404 TIGR02173 cyt_kin_arch cytidyl 89.9 0.26 5.7E-06 48.4 3.2 29 391-419 2-30 (171)
405 PF01057 Parvo_NS1: Parvovirus 89.9 0.9 2E-05 49.0 7.5 94 391-506 115-209 (271)
406 cd04155 Arl3 Arl3 subfamily. 89.9 0.24 5.2E-06 48.6 2.9 24 389-412 14-37 (173)
407 PRK08154 anaerobic benzoate ca 89.8 0.53 1.1E-05 51.7 5.8 29 391-419 135-163 (309)
408 cd04113 Rab4 Rab4 subfamily. 89.8 0.25 5.5E-06 47.8 2.9 22 391-412 2-23 (161)
409 TIGR03574 selen_PSTK L-seryl-t 89.7 0.21 4.5E-06 52.9 2.5 23 392-414 2-24 (249)
410 cd04101 RabL4 RabL4 (Rab-like4 89.7 0.25 5.5E-06 47.9 2.9 22 390-411 1-22 (164)
411 cd04160 Arfrp1 Arfrp1 subfamil 89.6 0.24 5.1E-06 48.2 2.6 22 391-412 1-22 (167)
412 cd01862 Rab7 Rab7 subfamily. 89.6 0.26 5.6E-06 48.1 2.9 23 390-412 1-23 (172)
413 cd01124 KaiC KaiC is a circadi 89.6 0.25 5.3E-06 49.4 2.8 20 392-411 2-21 (187)
414 PF03193 DUF258: Protein of un 89.6 0.51 1.1E-05 46.9 4.9 23 391-413 37-59 (161)
415 cd02023 UMPK Uridine monophosp 89.6 0.25 5.5E-06 50.2 2.9 22 392-413 2-23 (198)
416 PRK13894 conjugal transfer ATP 89.5 0.47 1E-05 52.4 5.1 22 391-412 150-171 (319)
417 PRK05480 uridine/cytidine kina 89.5 0.32 7E-06 49.9 3.6 24 390-413 7-30 (209)
418 cd04136 Rap_like Rap-like subf 89.5 0.3 6.4E-06 47.2 3.2 22 390-411 2-23 (163)
419 PRK09825 idnK D-gluconate kina 89.5 0.33 7.1E-06 48.9 3.5 25 391-415 5-29 (176)
420 cd01860 Rab5_related Rab5-rela 89.4 0.3 6.5E-06 47.2 3.1 23 390-412 2-24 (163)
421 PRK13808 adenylate kinase; Pro 89.3 0.32 6.9E-06 53.9 3.6 29 391-419 2-30 (333)
422 PRK05541 adenylylsulfate kinas 89.3 0.26 5.6E-06 49.2 2.7 24 391-414 9-32 (176)
423 PRK08356 hypothetical protein; 89.3 0.43 9.4E-06 48.6 4.3 21 391-411 7-27 (195)
424 cd03254 ABCC_Glucan_exporter_l 89.2 0.32 6.9E-06 50.6 3.4 25 391-415 31-55 (229)
425 cd03255 ABC_MJ0796_Lo1CDE_FtsE 89.1 0.29 6.3E-06 50.5 3.0 24 391-414 32-55 (218)
426 PRK05917 DNA polymerase III su 89.1 0.64 1.4E-05 50.6 5.6 85 391-479 21-121 (290)
427 PRK14737 gmk guanylate kinase; 89.0 0.41 8.9E-06 48.6 3.9 25 391-415 6-30 (186)
428 COG3842 PotA ABC-type spermidi 88.9 0.31 6.7E-06 54.3 3.1 24 392-415 34-57 (352)
429 cd01868 Rab11_like Rab11-like. 88.9 0.33 7.2E-06 47.2 3.0 22 390-411 4-25 (165)
430 cd00876 Ras Ras family. The R 88.8 0.31 6.8E-06 46.6 2.8 21 391-411 1-21 (160)
431 PLN02165 adenylate isopentenyl 88.8 0.41 8.8E-06 53.0 3.9 31 391-421 45-75 (334)
432 cd03292 ABC_FtsE_transporter F 88.8 0.34 7.4E-06 49.7 3.2 24 391-414 29-52 (214)
433 cd04145 M_R_Ras_like M-Ras/R-R 88.8 0.35 7.7E-06 46.7 3.1 23 390-412 3-25 (164)
434 TIGR00017 cmk cytidylate kinas 88.7 0.44 9.5E-06 49.7 3.9 32 391-422 4-35 (217)
435 TIGR02237 recomb_radB DNA repa 88.7 0.4 8.7E-06 49.1 3.6 22 391-412 14-35 (209)
436 cd03258 ABC_MetN_methionine_tr 88.7 0.35 7.5E-06 50.5 3.2 25 391-415 33-57 (233)
437 TIGR00554 panK_bact pantothena 88.6 0.48 1E-05 51.6 4.3 25 390-414 63-87 (290)
438 cd04156 ARLTS1 ARLTS1 subfamil 88.6 0.31 6.7E-06 47.0 2.6 22 391-412 1-22 (160)
439 cd04159 Arl10_like Arl10-like 88.6 0.3 6.4E-06 46.4 2.5 21 392-412 2-22 (159)
440 PRK14738 gmk guanylate kinase; 88.6 0.35 7.7E-06 49.8 3.2 24 391-414 15-38 (206)
441 cd03269 ABC_putative_ATPase Th 88.6 0.36 7.8E-06 49.5 3.2 24 391-414 28-51 (210)
442 TIGR03608 L_ocin_972_ABC putat 88.6 0.36 7.8E-06 49.2 3.2 24 391-414 26-49 (206)
443 cd03301 ABC_MalK_N The N-termi 88.6 0.36 7.8E-06 49.6 3.2 24 391-414 28-51 (213)
444 cd03216 ABC_Carb_Monos_I This 88.6 0.38 8.1E-06 47.6 3.2 25 391-415 28-52 (163)
445 cd04157 Arl6 Arl6 subfamily. 88.5 0.3 6.6E-06 47.0 2.5 22 391-412 1-22 (162)
446 cd04106 Rab23_lke Rab23-like s 88.5 0.35 7.6E-06 46.7 2.9 22 390-411 1-22 (162)
447 PF00406 ADK: Adenylate kinase 88.4 0.23 5.1E-06 48.2 1.6 23 394-416 1-23 (151)
448 TIGR02315 ABC_phnC phosphonate 88.4 0.35 7.5E-06 50.8 3.0 24 391-414 30-53 (243)
449 smart00173 RAS Ras subfamily o 88.4 0.36 7.7E-06 46.8 2.9 21 391-411 2-22 (164)
450 PRK00889 adenylylsulfate kinas 88.3 0.32 6.9E-06 48.4 2.5 24 391-414 6-29 (175)
451 cd03262 ABC_HisP_GlnQ_permease 88.3 0.38 8.2E-06 49.4 3.2 24 391-414 28-51 (213)
452 cd01866 Rab2 Rab2 subfamily. 88.3 0.38 8.3E-06 47.2 3.1 23 390-412 5-27 (168)
453 cd04117 Rab15 Rab15 subfamily. 88.3 0.36 7.7E-06 47.2 2.8 21 391-411 2-22 (161)
454 TIGR02858 spore_III_AA stage I 88.3 0.37 7.9E-06 52.0 3.1 25 391-415 113-137 (270)
455 cd01898 Obg Obg subfamily. Th 88.3 0.34 7.3E-06 47.2 2.6 22 391-412 2-23 (170)
456 cd03266 ABC_NatA_sodium_export 88.3 0.38 8.2E-06 49.6 3.1 24 391-414 33-56 (218)
457 cd04140 ARHI_like ARHI subfami 88.2 0.4 8.7E-06 46.8 3.2 22 390-411 2-23 (165)
458 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 88.2 0.39 8.5E-06 46.8 3.1 22 390-411 3-24 (166)
459 cd03281 ABC_MSH5_euk MutS5 hom 88.2 0.88 1.9E-05 47.2 5.8 21 391-411 31-51 (213)
460 PRK13541 cytochrome c biogenes 88.2 0.4 8.6E-06 48.7 3.2 24 391-414 28-51 (195)
461 TIGR00073 hypB hydrogenase acc 88.1 0.53 1.1E-05 48.4 4.1 24 391-414 24-47 (207)
462 TIGR00960 3a0501s02 Type II (G 88.1 0.38 8.2E-06 49.6 3.0 24 391-414 31-54 (216)
463 cd04139 RalA_RalB RalA/RalB su 88.1 0.39 8.4E-06 46.3 2.9 22 391-412 2-23 (164)
464 cd04115 Rab33B_Rab33A Rab33B/R 88.0 0.41 8.9E-06 47.1 3.1 22 390-411 3-24 (170)
465 PRK13709 conjugal transfer nic 88.0 0.68 1.5E-05 61.3 5.8 88 391-479 986-1088(1747)
466 cd03224 ABC_TM1139_LivF_branch 88.0 0.4 8.6E-06 49.5 3.1 24 391-414 28-51 (222)
467 cd03247 ABCC_cytochrome_bd The 88.0 0.43 9.3E-06 47.7 3.2 25 391-415 30-54 (178)
468 cd00820 PEPCK_HprK Phosphoenol 88.0 0.38 8.2E-06 44.5 2.5 20 391-410 17-36 (107)
469 TIGR03410 urea_trans_UrtE urea 87.9 0.4 8.7E-06 49.9 3.1 24 391-414 28-51 (230)
470 PF00735 Septin: Septin; Inte 87.9 0.35 7.6E-06 52.4 2.7 24 389-412 4-27 (281)
471 cd01863 Rab18 Rab18 subfamily. 87.9 0.4 8.6E-06 46.3 2.9 23 390-412 1-23 (161)
472 COG4525 TauB ABC-type taurine 87.9 0.38 8.1E-06 49.1 2.7 25 391-415 33-57 (259)
473 cd03295 ABC_OpuCA_Osmoprotecti 87.9 0.45 9.7E-06 50.0 3.5 25 391-415 29-53 (242)
474 COG1485 Predicted ATPase [Gene 87.9 0.28 6.1E-06 54.1 1.9 99 391-507 67-172 (367)
475 PF00485 PRK: Phosphoribulokin 87.9 0.3 6.6E-06 49.6 2.1 24 392-415 2-25 (194)
476 PLN02199 shikimate kinase 87.9 0.8 1.7E-05 49.8 5.4 29 391-419 104-132 (303)
477 cd03263 ABC_subfamily_A The AB 87.8 0.42 9.2E-06 49.3 3.2 24 391-414 30-53 (220)
478 PRK13695 putative NTPase; Prov 87.8 0.42 9E-06 47.6 3.0 22 391-412 2-23 (174)
479 cd02024 NRK1 Nicotinamide ribo 87.8 0.52 1.1E-05 48.0 3.7 23 392-414 2-24 (187)
480 cd03246 ABCC_Protease_Secretio 87.8 0.46 9.9E-06 47.3 3.3 25 391-415 30-54 (173)
481 cd04127 Rab27A Rab27a subfamil 87.8 0.42 9.2E-06 47.2 3.0 22 390-411 5-26 (180)
482 PRK12608 transcription termina 87.8 0.47 1E-05 53.2 3.7 23 391-413 135-157 (380)
483 TIGR01166 cbiO cobalt transpor 87.8 0.43 9.4E-06 48.1 3.2 24 391-414 20-43 (190)
484 cd03230 ABC_DR_subfamily_A Thi 87.8 0.45 9.7E-06 47.4 3.2 25 391-415 28-52 (173)
485 TIGR02673 FtsE cell division A 87.8 0.41 9E-06 49.2 3.1 24 391-414 30-53 (214)
486 PRK13540 cytochrome c biogenes 87.7 0.44 9.6E-06 48.6 3.2 24 391-414 29-52 (200)
487 cd03226 ABC_cobalt_CbiO_domain 87.7 0.42 9E-06 48.9 3.0 24 391-414 28-51 (205)
488 COG4178 ABC-type uncharacteriz 87.7 0.41 9E-06 56.6 3.3 25 391-415 421-445 (604)
489 TIGR02323 CP_lyasePhnK phospho 87.7 0.43 9.3E-06 50.5 3.2 25 391-415 31-55 (253)
490 TIGR02528 EutP ethanolamine ut 87.6 0.41 8.8E-06 45.4 2.7 22 391-412 2-23 (142)
491 PF02421 FeoB_N: Ferrous iron 87.6 0.37 8E-06 47.6 2.4 24 390-413 1-24 (156)
492 TIGR02211 LolD_lipo_ex lipopro 87.6 0.45 9.7E-06 49.2 3.2 24 391-414 33-56 (221)
493 cd01892 Miro2 Miro2 subfamily. 87.6 0.46 9.9E-06 47.0 3.1 26 387-412 2-27 (169)
494 cd03261 ABC_Org_Solvent_Resist 87.5 0.45 9.7E-06 49.8 3.2 25 391-415 28-52 (235)
495 PRK13477 bifunctional pantoate 87.5 0.52 1.1E-05 55.2 3.9 49 373-422 269-317 (512)
496 cd01861 Rab6 Rab6 subfamily. 87.4 0.44 9.5E-06 45.9 2.8 21 391-411 2-22 (161)
497 cd03256 ABC_PhnC_transporter A 87.4 0.44 9.5E-06 49.9 3.0 24 391-414 29-52 (241)
498 TIGR03878 thermo_KaiC_2 KaiC d 87.4 0.51 1.1E-05 50.5 3.5 21 391-411 38-58 (259)
499 cd03229 ABC_Class3 This class 87.3 0.47 1E-05 47.5 3.1 25 391-415 28-52 (178)
500 PRK05800 cobU adenosylcobinami 87.3 0.55 1.2E-05 47.0 3.5 25 391-415 3-27 (170)
No 1
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-162 Score=1339.76 Aligned_cols=706 Identities=48% Similarity=0.804 Sum_probs=649.1
Q ss_pred cccchhHHHHHHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhh-hhHHHHHHHHHHHHHHHHHHHH
Q 003809 7 ILVDEKAVRVENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMR-YNDLLQKAIADEYLRFEPYLKN 85 (794)
Q Consensus 7 ~~~d~~~~~v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~-fd~~La~~I~~~p~r~l~~l~~ 85 (794)
+|.|.+++.+++.|.+||+.|.... ++++|+.++..+...+..||+|||.||.+ |++.||.+|.++|++++|+++.
T Consensus 16 ~v~d~~g~~~~e~~~~Fle~~~~~~---~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~ 92 (764)
T KOG0480|consen 16 KVEDTTGERVEEEFLQFLESFKVQA---GEKKYLQSIELLDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCR 92 (764)
T ss_pred eEecccccchHHHHHHHHHHhhccc---cchhhHHHHHhhccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHH
Confidence 8999999999999999999999764 78999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCCccEEEEeeeCCCcccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEecCCCceeee
Q 003809 86 ACKRFVMEQNPNFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKN 165 (794)
Q Consensus 86 al~~~v~~~~~~~~~~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C~~C~~~~~~ 165 (794)
|+++++.+..... ....++|+++|+|+|..+++|+|+++.||+||+|+|+|+|+|+|||+++.++|.|..||+++.+
T Consensus 93 av~~~l~d~~~~~---~~~~~~~~v~f~nlp~~~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t~i~~ 169 (764)
T KOG0480|consen 93 AVHKVLKDWSTNS---GALVKKIYVRFYNLPTRHKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFLCEKCGTVIRN 169 (764)
T ss_pred HHHHHHHcccccc---cccceeEEEEEeccccccccccccHhhhcceEEEEEEEEEeecccceeeeeEEEHhhCCCeecc
Confidence 9999998732211 2356899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccCCcCCCCCCCCCCCceeeccCCceeEeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCEEEEEEE
Q 003809 166 VEQQFKYTEPTICANATCSNRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFTGT 245 (794)
Q Consensus 166 v~q~~~~t~P~~C~~~~C~~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~v~vtGi 245 (794)
++|+|+||+|++||||.|.|+..|.++.++|.|.|||+|||||+.+++|+|+|||+++|||++|+|++|+|||+|+|||+
T Consensus 170 v~q~fkYt~Pt~C~np~C~nrr~f~l~~~~s~f~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGi 249 (764)
T KOG0480|consen 170 VEQQFKYTEPTKCPNPVCSNRRSFTLDRSSSRFLDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGI 249 (764)
T ss_pred chhcCccCCCccCCCccccCCceeeeecccceeeeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCchhhhhhcccccCCccCCCccccceecccccchhheeeeeceEeecCCCccccccccccccchhh
Q 003809 246 VVVIPDILAMGSPGERAECRREASQRKSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADEED 325 (794)
Q Consensus 246 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~ 325 (794)
++|+||+++++.||.+++..| ++....|++|||++||||++|+++|+||++++.... +++..+.+
T Consensus 250 liVvpdv~~l~~pgsk~~n~r-------~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~~--------ee~~~~~~ 314 (764)
T KOG0480|consen 250 LIVVPDVSQLGGPGSKAENNR-------GGETGDGITGLKALGVRDLTYQLAFLACHVQSTLAV--------EEDDEEDM 314 (764)
T ss_pred EEEecChHHhcCCcccccccc-------CCCcccceeeehhcccccchhhhhHhhhhccccccc--------chhhhHHH
Confidence 999999999999999987542 122348999999999999999999999999865221 11223678
Q ss_pred ccCCCHHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHH
Q 003809 326 QHQFTTEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQF 405 (794)
Q Consensus 326 ~~~~t~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~L 405 (794)
+.+||.+|+..+++|+.++|+|.+|++|+||+||||+.+|+||+|+||||+.|.+.+|+++|||||||+||||||||||+
T Consensus 315 ~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQf 394 (764)
T KOG0480|consen 315 LNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQF 394 (764)
T ss_pred hhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEe
Q 003809 406 LKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISIT 485 (794)
Q Consensus 406 l~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~ 485 (794)
+++++.++||++|++|+.++++|||+++++|+.+|+|+++||||||||+|||||||||||+.++|.+||||||||+|+|+
T Consensus 395 Lk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIa 474 (764)
T KOG0480|consen 395 LKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIA 474 (764)
T ss_pred HHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceEEeecCceEEEEecCCCCCCCCCCCCcc----------------------------------------CcccccCc
Q 003809 486 KAGIQATLNARTSILAAANPAGGRYDKSKPLK----------------------------------------KHEDALAP 525 (794)
Q Consensus 486 kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~----------------------------------------~~~~~~~~ 525 (794)
|||+.++||+|+||||||||.+||||+.++++ ..++...+
T Consensus 475 KAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~ 554 (764)
T KOG0480|consen 475 KAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATER 554 (764)
T ss_pred ecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999887 11233344
Q ss_pred --cccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHH
Q 003809 526 --AFTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPR 603 (794)
Q Consensus 526 --~~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~ 603 (794)
.|+.+.+|+||.|||+++|.++.+|.+.|+++|..||+.+..+.++++|+||+||||||||||||+||++|+++||++
T Consensus 555 ~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~ 634 (764)
T KOG0480|consen 555 VCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKE 634 (764)
T ss_pred cccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHH
Confidence 799999999999999999999999999999999999999976667889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCceeee
Q 003809 604 HVRVAVRLLKTSVISVESSEIDLSEFQEDNRDDGDGGDDGNDGNDQGDAQPRNRTPEPASGIAGNGASSANRQGKTLVIS 683 (794)
Q Consensus 604 dv~eAi~L~~~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (794)
||++|++|+++|+++++.+||.+++. +.. + + . .+ .+...++|+++++
T Consensus 635 ~v~ea~eLlk~Siv~ve~ddi~~~d~-~~~----------~--~-----~---------~g------~s~~~~~k~~~~a 681 (764)
T KOG0480|consen 635 DVEEAVELLKKSIVRVEGDDIELDDN-DGE----------N--D-----S---------GG------ESAQKPKKKFTSA 681 (764)
T ss_pred HHHHHHHHHHhhheeecccccccccc-ccc----------c--C-----c---------cc------ccccchhhHHHHH
Confidence 99999999999999999999999863 110 0 0 0 00 0011236789999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcCCcCCCCChhHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEEEE
Q 003809 684 DEYFQRVTQALVMRLRQHEESVIQEGTGLAGMRQKDLIKWYVEQQNEKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIV 763 (794)
Q Consensus 684 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~ 763 (794)
|++|.+++|++|++++...+ . .-+++.+|+.|||++. ++.++|+++|+.++.++.+||+||+++|++|++
T Consensus 682 ~~~y~~~~~~~v~~~~~~~E------~--~~~~~~~lv~~~l~~~--e~~l~~e~~li~k~~~~~kvi~rl~~~~~vl~~ 751 (764)
T KOG0480|consen 682 LDEYVRLSNGIVLSIRVERE------L--ADLKRSNLVVWYLSEF--EDSLNSEGELIKKGPKVYKVISRLIHRDQVLME 751 (764)
T ss_pred HHHHHHHhhceeEEEEeecc------h--hhhhhhhhhhhhHHHH--HhhhccHHHHHHhcchHHHHHHHHhccceeEEE
Confidence 99999999999999994322 1 2288999999999999 999999999999999999999999999999999
Q ss_pred EeCCccccccCCCCCCCCCeEEEEcCCCCC
Q 003809 764 VDDGRQAAAEGEGRPSRDDRILAVAPNYVI 793 (794)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~pn~~~ 793 (794)
+++ .|+|||||++
T Consensus 752 ~~~-----------------~~~ihpn~~v 764 (764)
T KOG0480|consen 752 IDG-----------------KLVIHPNYDV 764 (764)
T ss_pred ecC-----------------cEEecCCCcC
Confidence 863 2999999985
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.8e-108 Score=941.55 Aligned_cols=547 Identities=42% Similarity=0.696 Sum_probs=485.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003809 15 RVENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLLQKAIADEYLRFEPYLKNACKRFVMEQ 94 (794)
Q Consensus 15 ~v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~fd~~La~~I~~~p~r~l~~l~~al~~~v~~~ 94 (794)
.+.+.|. |. |..+ +...|.+++ .+......++.||+.|+..|++.||..|.++|.++++.+++|+.++....
T Consensus 2 ~~~~~~~--~~-~~~~----~~~~~~~~~-~~~~~~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~ 73 (682)
T COG1241 2 KIAELFR--LR-FKWE----DILEYAENI-ILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLL 73 (682)
T ss_pred chhhhhh--hh-cccc----hHHHHHHHh-hhhhccceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhc
Confidence 3566777 44 6543 245677765 44444444999999999999999999999999999999999999999888
Q ss_pred CCCCCCCCCCCccEEEEeeeCCCcccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEecCCCceeeeeeccccccC
Q 003809 95 NPNFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTE 174 (794)
Q Consensus 95 ~~~~~~~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C~~C~~~~~~v~q~~~~t~ 174 (794)
.+.+. ...+.++++|.|+|.+.++|+|++.++||||+|+|+|+|+|.|+|++++++|.|..||+.+....+.+.+.+
T Consensus 74 ~~~~~---~~~~~~~~~~~~~~~~~~iR~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~~~~~~~~~~~ 150 (682)
T COG1241 74 FPEVD---RSLKKIHVRFKNLPNRLSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQSEFRVEP 150 (682)
T ss_pred Ccccc---ccccceEEEecCCcCCcChhhCchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCCCEEEEEeccccccC
Confidence 77663 233789999999999999999999999999999999999999999999999999999999988777788999
Q ss_pred CcCCCCCCCC-CCCceeeccCCceeEeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCEEEEEEEEEEecccc
Q 003809 175 PTICANATCS-NRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFTGTVVVIPDIL 253 (794)
Q Consensus 175 P~~C~~~~C~-~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~v~vtGil~~~p~~~ 253 (794)
|..|++. |. ++.+|.++.+.|.|+|||+|+|||.|+.+|.|++||+++|+|++|||++++|||+|.||||++..|+.+
T Consensus 151 ~~~C~~~-~~~~~~~~~~~~~~s~f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~ 229 (682)
T COG1241 151 PRECENC-GKFGKGPLKLVPRKSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRS 229 (682)
T ss_pred CccCCCc-cccCCCceEEecCcceeeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecccccc
Confidence 9999663 33 355799999999999999999999999999999999999999999999999999999999999887522
Q ss_pred ccCCCCCchhhhhhcccccCCccCCCccccceecccccchhheeeeeceEeecCCCccccccccccccchhhccCCCHHH
Q 003809 254 AMGSPGERAECRREASQRKSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADEEDQHQFTTEE 333 (794)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 333 (794)
. ++ . .....|+++..|++|...+.. ....+|+++
T Consensus 230 ~---~~-----------~-----------------~~~~~~~~~~~a~~v~~~~~~---------------~~~~~t~ed 263 (682)
T COG1241 230 L---SG-----------R-----------------RKGPVFEIYLEANSVEKLDKR---------------EEVEITEED 263 (682)
T ss_pred c---cc-----------c-----------------cCCceEEEEEEEEEEEeccch---------------hhccCCHHH
Confidence 0 00 0 001358999999999876431 345789999
Q ss_pred HHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 334 IDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 334 ~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.+.|+++++++++|++|++||||+||||+++|+||+|+||||+.+..++|+++||||||||+||||||||||++++++++
T Consensus 264 ~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a 343 (682)
T COG1241 264 EEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA 343 (682)
T ss_pred HHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEee
Q 003809 414 PRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATL 493 (794)
Q Consensus 414 p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l 493 (794)
|+++|++|++++++||||++++|+.+|+|++++|||++||+|||||||||||+..++++||+|||||+|+|+|||+.++|
T Consensus 344 Pr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 344 PRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred CceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeec
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEecCCCCCCCCCCCCcc-------------------------Cccccc-----------Cccc----------
Q 003809 494 NARTSILAAANPAGGRYDKSKPLK-------------------------KHEDAL-----------APAF---------- 527 (794)
Q Consensus 494 ~ar~siiAaaNP~~Gryd~~~~l~-------------------------~~~~~~-----------~~~~---------- 527 (794)
|+||+||||+||.+||||+.+++. ..|+.+ .+..
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 999999999999999999999876 001100 0111
Q ss_pred ---cHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHH
Q 003809 528 ---TTAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPR 603 (794)
Q Consensus 528 ---~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~ 603 (794)
+.++||+||.|||+ +.|.++++|.+.|.++|..+|+.........++++|+||||++||||+|+||+++++.|+++
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEE 583 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHH
Confidence 57789999999997 78999999999999999999997642225678999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccc
Q 003809 604 HVRVAVRLLKTSVISV 619 (794)
Q Consensus 604 dv~eAi~L~~~s~~~~ 619 (794)
||.+|++|++.|+.++
T Consensus 584 D~~eAi~lv~~~l~~v 599 (682)
T COG1241 584 DVDEAIRLVDFSLKTV 599 (682)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999764
No 3
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=3.7e-103 Score=920.19 Aligned_cols=668 Identities=25% Similarity=0.404 Sum_probs=533.7
Q ss_pred ccchhHHHHHHHHHHHHhhcccCC------------CCCCccchHHHHHHHHHCC----------CcEEEEecchHhhhh
Q 003809 8 LVDEKAVRVENIFLEFLKSFRLDG------------NMGGESCYEAEIEAMRANE----------SNTMFIDFSHVMRYN 65 (794)
Q Consensus 8 ~~d~~~~~v~~~F~~FL~~f~~~~------------~~~~~~~Y~~~i~~~~~~~----------~~tL~Vd~~~L~~fd 65 (794)
+.|...++++++|-.||++|.+-. ......||..+|.+|+..+ ..+|+|||.||..|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd 159 (915)
T PTZ00111 80 LLDNRLEELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFD 159 (915)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhh
Confidence 457788999999999999995421 0235579999999998865 379999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCccEEEEeeeCCCcccccccCccccCcEEEEEEEEEEe
Q 003809 66 DLLQKAIADEYLRFEPYLKNACKRFVMEQNPNFIS---DDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRT 142 (794)
Q Consensus 66 ~~La~~I~~~p~r~l~~l~~al~~~v~~~~~~~~~---~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G~V~r~ 142 (794)
+.||.+|.++|.+++|+|++|+.+++.+....... .......++|+|+|+|....+|+|++.++|+||+|+|+|+|+
T Consensus 160 ~~L~~~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~vr~~n~~~~~~iR~L~s~~i~kLV~v~GiV~r~ 239 (915)
T PTZ00111 160 KVLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGTVVRQ 239 (915)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHhhcccccchhccccceEEEEEeCCCCCCCcccCCHhhCCCeEEEEEEEEEc
Confidence 99999999999999999999999976653221110 011123579999999999999999999999999999999999
Q ss_pred ccceeEEEEEEEEecC-----------CCceeeeeeccccccCCcCCCCCCCCCCCceeeccCCceeEeeeEEEeeccCC
Q 003809 143 SEVRPELLQGTFKCLE-----------CGGVIKNVEQQFKYTEPTICANATCSNRTNWALLRQDSKFADWQRVRMQETSK 211 (794)
Q Consensus 143 S~V~p~l~~~~f~C~~-----------C~~~~~~v~q~~~~t~P~~C~~~~C~~~~~f~l~~~~S~f~D~Q~IrIQE~~~ 211 (794)
|.|+|++..++|+|.. |++.......+++|++|..|+ .|+++++|.++++.|.|+|||+|||||.|+
T Consensus 240 S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~~g~~~~P~~C~--~C~~~~~f~l~~~~s~f~D~Q~IklQE~pe 317 (915)
T PTZ00111 240 TWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVIQGEVNEPLLCN--ECNSKYTFELNHNMCVYSTKKIVKLLQSNS 317 (915)
T ss_pred cCcchhhEEEEEECCCCCcccCCccccCCccccccccCCcccCCCCCC--CCCCCCCeEEccCccEEEeeeEEEEeeCcc
Confidence 9999999999999996 665544444567899999995 599998999999999999999999999999
Q ss_pred CCCCCCCc--------------------eEEEEEEecccccccccCCEEEEEEEEEEeccccccCCCCCchhhhhhcccc
Q 003809 212 EIPAGSLP--------------------RSLDVILRHDIVEQARAGDTVIFTGTVVVIPDILAMGSPGERAECRREASQR 271 (794)
Q Consensus 212 ~~p~G~~P--------------------rsi~ViL~~dlVd~~kpGD~v~vtGil~~~p~~~~~~~~~~~~~~~~~~~~~ 271 (794)
.+|.|++| |+++|+|++||||+|+|||+|+|||||++.|.... ...
T Consensus 318 ~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~--------------~~~ 383 (915)
T PTZ00111 318 SLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTS--------------TTR 383 (915)
T ss_pred cCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEecccccc--------------ccc
Confidence 99999999 99999999999999999999999999998774210 000
Q ss_pred cCCccCCCccccceecccccchhheeeeeceEeecCCCccccccccccccchhhccCCCHHHHHHHHHHHcCCchHHHhh
Q 003809 272 KSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADEEDQHQFTTEEIDEIQRMRNAPDFFNKIV 351 (794)
Q Consensus 272 ~~~~~~~~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~i~~~~~~~~i~~~l~ 351 (794)
+ +.+ -.|++++.+++|+..+...... ..+. .........||+++++.|++++++|++|+.|+
T Consensus 384 ~----------~~~------~~~~~yl~~~~i~~~~~~~~~~-~~~~-~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~ 445 (915)
T PTZ00111 384 R----------TLK------SLYTYFVNVIHVKVINSTNANQ-PEKG-LKYLGNENDFSDLQVYKILELSRNPMIYRILL 445 (915)
T ss_pred c----------ccc------cccceEEEEEEEEEeccccccc-cccc-cccccccccCCHHHHHHHHHHhcCHHHHHHHH
Confidence 0 011 1388999999998764321110 0000 00011224699999999999999999999999
Q ss_pred hhcCCceechhhHHHHHHHHHhCCccccc-----CCC----cccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC
Q 003809 352 DSIGPTVFGHQDIKRAILLMLLGGVHKLT-----HEG----INLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK 422 (794)
Q Consensus 352 ~si~p~I~G~e~vK~alll~L~gg~~~~~-----~~g----~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~ 422 (794)
+||||+|+|++.+|+||+|+|+||+.+.. ++| +++||++||||+|+||||||++|+++++++||..|++|.
T Consensus 446 ~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~ 525 (915)
T PTZ00111 446 DSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGK 525 (915)
T ss_pred HHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCC
Confidence 99999999999999999999999997643 444 899999999999999999999999999999999999999
Q ss_pred ccCccccccccc-cCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEE
Q 003809 423 SSSAAGLTASVA-KEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILA 501 (794)
Q Consensus 423 ~ss~~gLt~~v~-~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiA 501 (794)
.++..|+++.+. ++..+|+|.+++|++++|++|+||||||++|++.+|.+||++||+|+++|.|+|+..+++++|+|||
T Consensus 526 ~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIA 605 (915)
T PTZ00111 526 SSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILA 605 (915)
T ss_pred CCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEE
Confidence 999999999877 5556899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCcc-------------------------Ccccc----------------------------------
Q 003809 502 AANPAGGRYDKSKPLK-------------------------KHEDA---------------------------------- 522 (794)
Q Consensus 502 aaNP~~Gryd~~~~l~-------------------------~~~~~---------------------------------- 522 (794)
|+||.+||||+.+++. ..|..
T Consensus 606 AaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~ 685 (915)
T PTZ00111 606 SCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVED 685 (915)
T ss_pred EcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccc
Confidence 9999999999988765 00000
Q ss_pred -------cCccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCCC---------------------CCCCccc
Q 003809 523 -------LAPAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGDT---------------------TPGSRVA 573 (794)
Q Consensus 523 -------~~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~~---------------------~~~~~~~ 573 (794)
....++.++||+||.|||+ ++|.|+++|.+.|.++|.+||+... ...+...
T Consensus 686 ~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (915)
T PTZ00111 686 ESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRM 765 (915)
T ss_pred cccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCc
Confidence 0023678999999999995 8999999999999999999997421 0113346
Q ss_pred cccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhcc----cccCCccccccccccCCCCCCCCCCCCCCCCC
Q 003809 574 YRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVI----SVESSEIDLSEFQEDNRDDGDGGDDGNDGNDQ 649 (794)
Q Consensus 574 ~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (794)
.++|+||||+|||||+|+|||++++.|+.+||++|++|++.|+. +++++.||++..... .
T Consensus 766 i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G-----------~----- 829 (915)
T PTZ00111 766 IYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQG-----------I----- 829 (915)
T ss_pred ccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCcccceeeccC-----------C-----
Confidence 89999999999999999999999999999999999999998775 456777776643110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcCCCCCceeeeHHHHHHHHHHHHHHHHhhhhhhhhcCCcCCCCChhHHHHHHHHhhc
Q 003809 650 GDAQPRNRTPEPASGIAGNGASSANRQGKTLVISDEYFQRVTQALVMRLRQHEESVIQEGTGLAGMRQKDLIKWYVEQQN 729 (794)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yl~~~~ 729 (794)
+..++ +.-..+.+.|...+....+ .+...+++.++|++|+-++..
T Consensus 830 -----------------------s~~~r-------~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~ 874 (915)
T PTZ00111 830 -----------------------TTNKM-------QQLNQMYEQVLSVLTRSSN-----QDSNKSLDLNEVLSLCHKTFK 874 (915)
T ss_pred -----------------------cHHHH-------HHHHHHHHHHHHHHHhhhc-----cccCCceeHHHHHHHHHhhcc
Confidence 00010 1112222333323222111 123358999999999977652
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Q 003809 730 EKNTYSSMEEVKKEVSKLKAIIESLIRREGHLIVVD 765 (794)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~~ 765 (794)
......+ .-.++.++.+|++|.. ++.+++-+
T Consensus 875 --~~~~~~~--~i~~~~~~~~l~~L~~-~g~i~~~~ 905 (915)
T PTZ00111 875 --DNRDHKD--GEIYKLISEVLNKMVQ-EGTAVREN 905 (915)
T ss_pred --ccchhcc--CCCHHHHHHHHHHHHh-CCeEeeeC
Confidence 1111111 1234579999999999 67666654
No 4
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-104 Score=856.55 Aligned_cols=561 Identities=35% Similarity=0.583 Sum_probs=489.4
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003809 12 KAVRVENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLLQKAIADEYLRFEPYLKNACKRFV 91 (794)
Q Consensus 12 ~~~~v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~fd~~La~~I~~~p~r~l~~l~~al~~~v 91 (794)
..+.++..|++|++.|... ..++|+++|+........+|.|+++||..||.+|+..|..+|.+++|+|++|+.++.
T Consensus 24 ~~~~v~~~fkefir~f~~~----~~f~Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~fEeAa~~Va 99 (729)
T KOG0481|consen 24 RKSQVKTKFKEFIRQFRTG----TDFKYRDQLKRNYNLGEYSLEVELEDLISFDEDLADKLSKQPADHLPLFEEAAKEVA 99 (729)
T ss_pred cHHHHHHHHHHHHHHhccc----cccchHHHHHhcccccceEEEEEHHHhhccchHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 5789999999999999875 457899999998888899999999999999999999999999999999999999998
Q ss_pred HhhCCCCCCCCCCCccEEEEeeeCCCcccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEecCCCceeeeeec---
Q 003809 92 MEQNPNFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQ--- 168 (794)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C~~C~~~~~~v~q--- 168 (794)
.++.....+......+|+|.+..--...++|+|+++++.|||.|+|+|+.+|.|+.+.+.....|.+|.++..++.-
T Consensus 100 d~i~~~~~~~E~~~~d~Qv~L~sda~p~~iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~~~~~~~pg 179 (729)
T KOG0481|consen 100 DEITRPRPSGEEVLHDIQVLLTSDANPISIRQLKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTRPNVIMRPG 179 (729)
T ss_pred hhhcCCCcCCCccceeeEEEEecCCCcccHhHhhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccccceecCCC
Confidence 88754443334456789999887667789999999999999999999999999999999999999999998765532
Q ss_pred cccccCCcCCC-----CCCCCCCCceeeccCCceeEeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCEEEEE
Q 003809 169 QFKYTEPTICA-----NATCSNRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFT 243 (794)
Q Consensus 169 ~~~~t~P~~C~-----~~~C~~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~v~vt 243 (794)
-..|..|..|. .+.|.-. +|.+.+++|+|+|+|.+++||.|+.+|.|+|||++.+.+...|++++.||.||+|+
T Consensus 180 l~g~~lPR~C~~~~~~k~~Cp~D-Pyii~pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~ 258 (729)
T KOG0481|consen 180 LEGYALPRKCDTPQAGKPKCPLD-PYIIMPDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCDRYLTNKVVPGNRVTIM 258 (729)
T ss_pred ccccccccccCCcccCCCCCCCC-CEEEcccccceeehhheehhhCcccCCcCcCcchhhhhhhHHHhccccCCceEEEE
Confidence 12588999997 4678764 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccccCCCCCchhhhhhcccccCCccCCCcc--ccceecccccchhheeeeeceEeecCCCcccccccccccc
Q 003809 244 GTVVVIPDILAMGSPGERAECRREASQRKSSAVGHDGV--RGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDA 321 (794)
Q Consensus 244 Gil~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~ 321 (794)
|||-+....+ + .++....-|+ .+++.+|+.+ .... .
T Consensus 259 GIYsI~~~~~----~-------------~~s~k~~v~iR~PyirVvGi~~--------------ds~~-----------s 296 (729)
T KOG0481|consen 259 GIYSIKKFGS----T-------------SSSDKSGVGIRTPYIRVVGIQD--------------DSEG-----------S 296 (729)
T ss_pred EEEEeeeccc----c-------------CCCCccceeeecceEEEEEEEe--------------ccCC-----------c
Confidence 9996543211 0 0000011121 2344444321 1100 0
Q ss_pred chhhccCCCHHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcch
Q 003809 322 DEEDQHQFTTEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCA 401 (794)
Q Consensus 322 ~~~~~~~~t~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtG 401 (794)
.......||++|.+++++++..+++|++|++||+|+|||++++|+|+.|.||||..|.+++|+++||||||||.|||||+
T Consensus 297 s~~~~~~ft~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtA 376 (729)
T KOG0481|consen 297 SRSSATMFTPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTA 376 (729)
T ss_pred cccCcccCChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchh
Confidence 01234579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccE
Q 003809 402 KSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQT 481 (794)
Q Consensus 402 KS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~ 481 (794)
||||++++.+.+|.++|++|++||++||||++.||+.+.+|.++.||++|||||||||||||||.++++.++|||||||+
T Consensus 377 KSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQT 456 (729)
T KOG0481|consen 377 KSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQT 456 (729)
T ss_pred HHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecceEEeecCceEEEEecCCCCCCCCCCCCcc---------------------Cc---------------------
Q 003809 482 ISITKAGIQATLNARTSILAAANPAGGRYDKSKPLK---------------------KH--------------------- 519 (794)
Q Consensus 482 isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~---------------------~~--------------------- 519 (794)
|+|+|||++++||+||||+||+||.+||||..++-. .+
T Consensus 457 ISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n 536 (729)
T KOG0481|consen 457 ISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKAN 536 (729)
T ss_pred HHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccc
Confidence 999999999999999999999999999999988422 00
Q ss_pred -----ccccCccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCC----CCCCCccccccCHHHHHHHHHHHH
Q 003809 520 -----EDALAPAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGD----TTPGSRVAYRMTVRQLEALIRLSE 589 (794)
Q Consensus 520 -----~~~~~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~----~~~~~~~~~~iT~R~LesliRlse 589 (794)
++.....++.+.|++||.|||. +.|.|+++|.+.|..+|+.+|..- .....++++|+|+||||++||++|
T Consensus 537 ~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~E 616 (729)
T KOG0481|consen 537 AQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAE 616 (729)
T ss_pred cccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHH
Confidence 0112345788999999999995 999999999999999999998752 223467889999999999999999
Q ss_pred HHHHhcCCCCcCHHHHHHHHHHHhhhcccc
Q 003809 590 AIARSHLETQVHPRHVRVAVRLLKTSVISV 619 (794)
Q Consensus 590 A~Arl~~~~~V~~~dv~eAi~L~~~s~~~~ 619 (794)
++|+|+++..+|++||+||++||+.|..+.
T Consensus 617 SLAKm~Ls~~ate~hV~EA~RLF~vSTmdA 646 (729)
T KOG0481|consen 617 SLAKMELSPFATEAHVEEALRLFQVSTMDA 646 (729)
T ss_pred HHHhhcCCccccHHHHHHHHHHHhHhhHHH
Confidence 999999999999999999999999997665
No 5
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-102 Score=868.32 Aligned_cols=562 Identities=36% Similarity=0.584 Sum_probs=501.3
Q ss_pred hhHHHHHHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003809 11 EKAVRVENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLLQKAIADEYLRFEPYLKNACKRF 90 (794)
Q Consensus 11 ~~~~~v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~fd~~La~~I~~~p~r~l~~l~~al~~~ 90 (794)
....++.+.|+.||.+|...+ ...++|++.+.+|..-+...+.+|..||..|+..|+..+..+|.+++|.+..+++++
T Consensus 128 v~iqe~~~~F~~fl~rf~~~d--~~~~~yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~ 205 (804)
T KOG0478|consen 128 VNIQECPENFDDFLRRFRGID--PLCPYYIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEI 205 (804)
T ss_pred EEHHhhhhHHHHHHHhcCCCC--ccchHHHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHH
Confidence 345788999999999995443 267899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCCCCccEEEEeeeCCCcccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEecCCCceeeeeeccc
Q 003809 91 VMEQNPNFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQF 170 (794)
Q Consensus 91 v~~~~~~~~~~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C~~C~~~~~~v~q~~ 170 (794)
+.+.++. ....+.++||.+|+-.+.++|+|+++.|.|||+|+|+|+|+|+|-|++++++|+|..|++.+......+
T Consensus 206 ~~e~~~~----~~~~~~i~vRPfn~~~~~smr~lNp~dIDkLisI~GmViRss~vipem~~afFrC~vC~~~~~ve~drg 281 (804)
T KOG0478|consen 206 VLERYVL----EILEKSIKVRPFNAGKTFSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSVCGHEIAVESDRG 281 (804)
T ss_pred HHhhccc----cchhceeEeeccCcccccccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhhcCceEEEEeecC
Confidence 9988743 224578999999999999999999999999999999999999999999999999999999987666668
Q ss_pred cccCCcCCCCCCCCCCCceeeccCCceeEeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCEEEEEEEEEEec
Q 003809 171 KYTEPTICANATCSNRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFTGTVVVIP 250 (794)
Q Consensus 171 ~~t~P~~C~~~~C~~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~v~vtGil~~~p 250 (794)
+..+|..|. .|..+..|.|.++.|.|.|.|.||+||.|+.+|.|+||.+|+|.|++||||+++|||+|.|||||+..|
T Consensus 282 ~i~eP~~C~--~C~~~~~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p 359 (804)
T KOG0478|consen 282 RIKEPMLCK--ECGTTNSFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATP 359 (804)
T ss_pred ccCCCcccc--cccCcccceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEE
Confidence 899999995 799999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccCCCCCchhhhhhcccccCCccCCCccccceecccccchhheeeeeceEeecCCCccccccccccccchhhccCCC
Q 003809 251 DILAMGSPGERAECRREASQRKSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADEEDQHQFT 330 (794)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~t 330 (794)
-.. +. ..+.+|+ .|++|+.+.|+...+...-. .. + +......++
T Consensus 360 ~r~--------------np----------~~r~vkS------vyktyldvvh~rk~s~~rl~---~~--d-~~d~~~~~~ 403 (804)
T KOG0478|consen 360 VRV--------------NP----------RMRMVKS------VYKTYLDVVHIRKASMKRLE---GS--D-ERDVDEVRR 403 (804)
T ss_pred ecc--------------Cc----------chhhHHH------HHHHHhHhhhhhhhhhhhcc---cc--c-ccccccccc
Confidence 422 10 1122333 49999999999877653211 00 1 112234677
Q ss_pred HHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHH
Q 003809 331 TEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 331 ~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~ 410 (794)
.++++.|.++++.|++|+.|++||||+|||++++|+||||+||||+.+....|.++|||||||||||||||||||+++++
T Consensus 404 ~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~ 483 (804)
T KOG0478|consen 404 IEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCH 483 (804)
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999888776799999999999999999999999999
Q ss_pred hhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceE
Q 003809 411 GIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQ 490 (794)
Q Consensus 411 ~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~ 490 (794)
+++||++|++|+++++.|||+.+.+|+++++|+++.|||++||+|||||||||||+.+.++.|||+||||+++|+|||+.
T Consensus 484 ~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII 563 (804)
T KOG0478|consen 484 RLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGII 563 (804)
T ss_pred HhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCceEEEEecCCCCCCCCCCCCcc---------------------Ccccc--------------------cCccccH
Q 003809 491 ATLNARTSILAAANPAGGRYDKSKPLK---------------------KHEDA--------------------LAPAFTT 529 (794)
Q Consensus 491 ~~l~ar~siiAaaNP~~Gryd~~~~l~---------------------~~~~~--------------------~~~~~~~ 529 (794)
++||||+|||||+||.+++|++.+++. ..++. -+..++.
T Consensus 564 ~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~ 643 (804)
T KOG0478|consen 564 ASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDM 643 (804)
T ss_pred eeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhH
Confidence 999999999999999999999999876 11111 1123567
Q ss_pred HHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHH
Q 003809 530 AQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVA 608 (794)
Q Consensus 530 ~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eA 608 (794)
..++.||.|||. +.|.++++|.+.+..+|+.+|+..... ....-|+||||+|+||+||||++++++.|.+.||++|
T Consensus 644 ~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~---~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA 720 (804)
T KOG0478|consen 644 NLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGA---GQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEA 720 (804)
T ss_pred HHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccc---cccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHH
Confidence 789999999997 899999999999999999999986532 2456789999999999999999999999999999999
Q ss_pred HHHHhhhcccc
Q 003809 609 VRLLKTSVISV 619 (794)
Q Consensus 609 i~L~~~s~~~~ 619 (794)
++|.+..+-..
T Consensus 721 ~~l~R~aL~~~ 731 (804)
T KOG0478|consen 721 VRLLREALKQS 731 (804)
T ss_pred HHHHHHHhccc
Confidence 99999877554
No 6
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-102 Score=841.78 Aligned_cols=556 Identities=38% Similarity=0.611 Sum_probs=476.0
Q ss_pred HHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003809 17 ENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYND--LLQKAIADEYLRFEPYLKNACKRFVMEQ 94 (794)
Q Consensus 17 ~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~fd~--~La~~I~~~p~r~l~~l~~al~~~v~~~ 94 (794)
+++.+.||..|.+++ ...+|++++.++.+++...++||++||..|+. +|..+|..|..+|..+|..|+.+++.+.
T Consensus 14 k~~~~~fl~e~~e~~---~~~kY~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp~~ 90 (721)
T KOG0482|consen 14 KNKIKKFLDEFYEDN---ELGKYMNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLPEP 90 (721)
T ss_pred hHHHHHHHHhhhccC---chhHHHHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 456778888887764 34589999999999999999999999999985 7999999999999999999999998876
Q ss_pred CCCCC------------------CCCC------------CCccEEEEeeeCC--CcccccccCccccCcEEEEEEEEEEe
Q 003809 95 NPNFI------------------SDDN------------PNKDINVAFFNIP--FSKRLRELTTAEIGRLVSVTGVVTRT 142 (794)
Q Consensus 95 ~~~~~------------------~~~~------------~~~~~~V~f~nlp--~~~~iR~L~s~~igkLV~i~G~V~r~ 142 (794)
..... ..+. ..+.|.+.|.... ....+|++++.+||+||+++|+|||+
T Consensus 91 ~~~~~~~~d~lDv~~~qR~~~~~~~~p~~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~iG~LvtvrGIVTR~ 170 (721)
T KOG0482|consen 91 TGEIPYGDDVLDVYMEQRLMRNETRDPELEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADHIGSLVTVRGIVTRV 170 (721)
T ss_pred ccccccCccHHHHHHHHHHHhccccCccccchhhcCCHHHhhhheeeecccccCCccchhhhhhhhccceEEEEEEEEec
Confidence 52211 0000 1256677775433 23579999999999999999999999
Q ss_pred ccceeEEEEEEEEecCCCceeeeeeccccccCCcCCCCCCCC---CCCceeeccCCceeEeeeEEEeeccCCCCCCCCCc
Q 003809 143 SEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICANATCS---NRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLP 219 (794)
Q Consensus 143 S~V~p~l~~~~f~C~~C~~~~~~v~q~~~~t~P~~C~~~~C~---~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~P 219 (794)
|+|+|.+..++|.|..||.+++...++-.|+++..||+..|. .++...+....|+|+.||++++||.++.+|.|.+|
T Consensus 171 S~VKP~m~VatYtCd~CGaE~yQeV~s~~F~pl~~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~kmQEls~qVPvG~IP 250 (721)
T KOG0482|consen 171 SDVKPSMVVATYTCDQCGAETYQEVNSRTFTPLSECPSEECRTNKAGGRLYLQTRGSKFIKFQEVKMQELSDQVPVGHIP 250 (721)
T ss_pred cccccceEEEEEecccccHhhhccccCccccchhhCChHHhhhcccCCeEEEEecccccchhhhhhHHHHhccCCCCccC
Confidence 999999999999999999999887778889999999999996 23567788899999999999999999999999999
Q ss_pred eEEEEEEecccccccccCCEEEEEEEEEEeccccccCCCCCchhhhhhcccccCCccCCCccccceecccccchhheeee
Q 003809 220 RSLDVILRHDIVEQARAGDTVIFTGTVVVIPDILAMGSPGERAECRREASQRKSSAVGHDGVRGLRALGVRDLSYRLAFI 299 (794)
Q Consensus 220 rsi~ViL~~dlVd~~kpGD~v~vtGil~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lk~~gv~~~~~~~~~~ 299 (794)
|||.|.++++++.+|+|||.|.|+||+...|. .|++.+++. |.-++|+.
T Consensus 251 Rsltv~~~ge~tr~~~PGDvV~vsGiFLP~py---------------------------tGfr~~~aG----LladtYLe 299 (721)
T KOG0482|consen 251 RSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPY---------------------------TGFRALKAG----LLADTYLE 299 (721)
T ss_pred ceeEEEEecccceecCCCCEEEEeeeecccch---------------------------hhHHHHHhh----hHHHHHHH
Confidence 99999999999999999999999999854431 133334431 22356677
Q ss_pred eceEeecCCCccccccccccccchhhccCCCHHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccc
Q 003809 300 ANSVQIADGRRDTDIRNRKKDADEEDQHQFTTEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKL 379 (794)
Q Consensus 300 a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~ 379 (794)
|..|...++.. + +.......++ ++.++....++|++|+.||||+||||+++||||||.|+||+.+.
T Consensus 300 Ah~v~~~nk~~--~--------~~~~~~~~~~----~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~ 365 (721)
T KOG0482|consen 300 AHRVVQINKKY--D--------NIEKTGELEP----EELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKS 365 (721)
T ss_pred Hhhhhhhcccc--c--------cccccccccH----HHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCC
Confidence 77665543310 0 1122223333 34455667899999999999999999999999999999999998
Q ss_pred cCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEe
Q 003809 380 THEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCI 459 (794)
Q Consensus 380 ~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~I 459 (794)
..+|+++||||||||+||||++||||++++.+++||++|++|++||..||||++.||+-+|+.+++.|||+|||+|||||
T Consensus 366 ~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCI 445 (721)
T KOG0482|consen 366 PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCI 445 (721)
T ss_pred CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCcc----------------------
Q 003809 460 DEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLK---------------------- 517 (794)
Q Consensus 460 DE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~---------------------- 517 (794)
||||||++.++.+||++||||+|||+|||+.++||+||+||||+||.+||||+..++.
T Consensus 446 DEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~ 525 (721)
T KOG0482|consen 446 DEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDR 525 (721)
T ss_pred hhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999999987755
Q ss_pred -Ccc--c------------ccC-----ccccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccC
Q 003809 518 -KHE--D------------ALA-----PAFTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMT 577 (794)
Q Consensus 518 -~~~--~------------~~~-----~~~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT 577 (794)
.++ . .-. .+++.+.||+||.+||+.+|.++++..++|...|+++|+.... .+..--.|
T Consensus 526 pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~--~~~~t~tt 603 (721)
T KOG0482|consen 526 PDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARS--SKDFTYTT 603 (721)
T ss_pred CcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc--cCCCcccC
Confidence 011 0 001 2478999999999999999999999999999999999998652 22334489
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhcccccCC
Q 003809 578 VRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVISVESS 622 (794)
Q Consensus 578 ~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~~~~~~ 622 (794)
+|.|.+|+|||.|+|||++++.|..+||.||++|++.|..++...
T Consensus 604 pRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK~sL~~~ 648 (721)
T KOG0482|consen 604 PRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSKDSLYQD 648 (721)
T ss_pred HHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999999999999999998777543
No 7
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-100 Score=834.57 Aligned_cols=553 Identities=35% Similarity=0.539 Sum_probs=481.5
Q ss_pred cchhHHHHHHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003809 9 VDEKAVRVENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLLQKAIADEYLRFEPYLKNACK 88 (794)
Q Consensus 9 ~d~~~~~v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~fd~~La~~I~~~p~r~l~~l~~al~ 88 (794)
-|..-.+..+.|.+||.++.+ ...|.+.+..|.......|.|+++||..|++.+|..|+.+|..++|.|++|+.
T Consensus 6 ~d~~~~e~~r~f~efLd~~~D------~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~ 79 (818)
T KOG0479|consen 6 EDARFRERVRDFIEFLDDEED------ADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALT 79 (818)
T ss_pred HHHHHHHHHHHHHHHhcchhh------hhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHH
Confidence 344445556667777776642 34899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCccEEEEeeeCCC--cccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEecCCCceeeee
Q 003809 89 RFVMEQNPNFISDDNPNKDINVAFFNIPF--SKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNV 166 (794)
Q Consensus 89 ~~v~~~~~~~~~~~~~~~~~~V~f~nlp~--~~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C~~C~~~~~~v 166 (794)
+++....+.|. .....|+|.|.+... ..++|.|++.++|+|||++|+||++|-|||++.+.++.|+..+.+...-
T Consensus 80 ~~~~~~d~~~~---~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~ 156 (818)
T KOG0479|consen 80 DAASRIDDVYA---KVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERD 156 (818)
T ss_pred HHHhcccchhh---hhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhh
Confidence 99988766553 235679999988654 3479999999999999999999999999999999999999988765321
Q ss_pred eccc--cccCCcCCCCCCCC-CCCceeeccCCceeEeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCEEEEE
Q 003809 167 EQQF--KYTEPTICANATCS-NRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFT 243 (794)
Q Consensus 167 ~q~~--~~t~P~~C~~~~C~-~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~v~vt 243 (794)
.... .-+.|+.-..|+-. +.+.+......|.|.|+|.|.|||.|+..|+|++|||++|+|.+||||+|||||||.|.
T Consensus 157 Y~D~T~~~~~p~~svYPT~De~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV~iv 236 (818)
T KOG0479|consen 157 YRDATMLTTLPTGSVYPTRDEDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVNIV 236 (818)
T ss_pred hcchheecccccCCcCCccCCCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCeeEEE
Confidence 1111 11223222233322 34567777889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccccCCCCCchhhhhhcccccCCccCCCccccceecccccchhheeeeeceEeecCCCccccccccccccch
Q 003809 244 GTVVVIPDILAMGSPGERAECRREASQRKSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADE 323 (794)
Q Consensus 244 Gil~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~ 323 (794)
|+|++.|..+ + |. ...+|++.++||+|....+
T Consensus 237 G~yr~Lp~k~--------------~-----------g~--------tsg~FRTvliaNni~~l~k--------------- 268 (818)
T KOG0479|consen 237 GIYRSLPGKS--------------N-----------GN--------TSGTFRTVLIANNIELLSK--------------- 268 (818)
T ss_pred EEEeeccCcc--------------C-----------Cc--------ccceeEEEEEeccHHhhcc---------------
Confidence 9999876321 1 10 1125999999999987643
Q ss_pred hhccCCCHHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHH
Q 003809 324 EDQHQFTTEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKS 403 (794)
Q Consensus 324 ~~~~~~t~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS 403 (794)
.....|+.+++..|+++++..|+|+.|+.|+||+||||+.+|+||||.|+||+.+++.+|+++||||||||+|||+|+||
T Consensus 269 e~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKS 348 (818)
T KOG0479|consen 269 EAAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKS 348 (818)
T ss_pred cccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHH
Confidence 12457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEE
Q 003809 404 QFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTIS 483 (794)
Q Consensus 404 ~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~is 483 (794)
||+|++.+.+|+++-++|++||+.||||+++.|+++|+..+++||++|||.||+||||||||+.-++.+||++||||+++
T Consensus 349 QLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVT 428 (818)
T KOG0479|consen 349 QLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVT 428 (818)
T ss_pred HHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecceEEeecCceEEEEecCCCCCCCCCCCCcc--------------------------------------C-------
Q 003809 484 ITKAGIQATLNARTSILAAANPAGGRYDKSKPLK--------------------------------------K------- 518 (794)
Q Consensus 484 i~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~--------------------------------------~------- 518 (794)
|+||||+++||+|||||||+||.+|+||..++.. +
T Consensus 429 IaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~ 508 (818)
T KOG0479|consen 429 IAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGE 508 (818)
T ss_pred eEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcc
Confidence 9999999999999999999999999999977533 0
Q ss_pred ------cc---------------------------------cccCccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHH
Q 003809 519 ------HE---------------------------------DALAPAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVDSY 558 (794)
Q Consensus 519 ------~~---------------------------------~~~~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y 558 (794)
.+ ......++.+++|+||.|||. ++|.|+++|.++|.+.|
T Consensus 509 ~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y 588 (818)
T KOG0479|consen 509 EDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEY 588 (818)
T ss_pred cCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHH
Confidence 00 001123678899999999997 99999999999999999
Q ss_pred HHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhccc
Q 003809 559 VALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVIS 618 (794)
Q Consensus 559 ~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~~ 618 (794)
..||..+.........|+|+|+||+|||||.||||+++++.|+..|++.|+.|++..+..
T Consensus 589 ~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA~f~ 648 (818)
T KOG0479|consen 589 TDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRFALFK 648 (818)
T ss_pred hhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHHHHHh
Confidence 999998875555677999999999999999999999999999999999999999998876
No 8
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=100.00 E-value=7.7e-101 Score=843.33 Aligned_cols=557 Identities=36% Similarity=0.609 Sum_probs=504.7
Q ss_pred chhHHHHHHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003809 10 DEKAVRVENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLLQKAIADEYLRFEPYLKNACKR 89 (794)
Q Consensus 10 d~~~~~v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~fd~~La~~I~~~p~r~l~~l~~al~~ 89 (794)
|....++..+|+.||.+|.+.. +...|...|..|...+..+|.|+|.||..-.+.||..+.+.|..++.++++++.+
T Consensus 155 ~~~r~~i~~~fk~fl~~y~d~~---~~~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~ 231 (854)
T KOG0477|consen 155 DGVRREIARRFKNFLREYVDEN---GHNVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALE 231 (854)
T ss_pred cchhhHHHHHHHHHHHHHhccc---ccchHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4455688999999999999764 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCCCCccEEEEeeeCCCcccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEecCCCceeeeeecc
Q 003809 90 FVMEQNPNFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQ 169 (794)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C~~C~~~~~~v~q~ 169 (794)
++..++|.|. ....+|+|++.++|.+..+|.||..|+|+||.++|+|||.+.|.|.+....|.|.+|+.++..+.|+
T Consensus 232 ~v~~~~p~ye---ri~~~ihvris~lP~~~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vlgPF~qs 308 (854)
T KOG0477|consen 232 VVLLHYPNYE---RIHNEIHVRISDLPVCESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVLGPFVQS 308 (854)
T ss_pred HHHHhCCChh---hcccceeeeeecCCccccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCccCceeec
Confidence 9999999884 3466899999999999999999999999999999999999999999999999999999988766554
Q ss_pred -ccccCCcCCCCCCCCCCCceeeccCCceeEeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCEEEEEEEEEE
Q 003809 170 -FKYTEPTICANATCSNRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFTGTVVV 248 (794)
Q Consensus 170 -~~~t~P~~C~~~~C~~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~v~vtGil~~ 248 (794)
..-..|+.| |.|+++++|.++.+...|.+||+|+|||.|..+|+|.+|||.+|||.+||||.|||||.|.|||||.-
T Consensus 309 ~n~evkp~~C--~~cqSkGpf~vn~e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~n 386 (854)
T KOG0477|consen 309 SNSEVKPGSC--PECQSKGPFEVNVEETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTN 386 (854)
T ss_pred cCceeCCCCC--ccccCCCCCccchhhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeeeecc
Confidence 455689999 55999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred eccccccCCCCCchhhhhhcccccCCccCCCccccceecccccchhheeeeeceEeecCCCccccccccccccchhhccC
Q 003809 249 IPDILAMGSPGERAECRREASQRKSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADEEDQHQ 328 (794)
Q Consensus 249 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (794)
..+.+ | + ...|+. .|.+.+.||||...+. .....+
T Consensus 387 n~d~s-L--------------N------~kngFp----------vfatvi~ANhV~~k~~--------------~~~~~~ 421 (854)
T KOG0477|consen 387 NFDGS-L--------------N------TKNGFP----------VFATVIEANHVVKKDG--------------KFDVDE 421 (854)
T ss_pred ccccc-c--------------c------ccCCcc----------ccceeheehhhhhhcc--------------ccchhH
Confidence 44322 0 0 011221 3788899999865432 223457
Q ss_pred CCHHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHH
Q 003809 329 FTTEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKY 408 (794)
Q Consensus 329 ~t~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~ 408 (794)
+|+++...|.+++++|.|-.++.+||||+||||+++|.|+.|+|+||++++...+.++|||||+||+|||||||||++|+
T Consensus 422 ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY 501 (854)
T KOG0477|consen 422 LTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKY 501 (854)
T ss_pred HhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecc
Q 003809 409 AAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAG 488 (794)
Q Consensus 409 i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG 488 (794)
+++.++|+++++|.+++++|||+++.|+|-+++|++++|||+|||+|||||||||||+..++..||+|||||.|+|+|||
T Consensus 502 ~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAG 581 (854)
T KOG0477|consen 502 AEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAG 581 (854)
T ss_pred HHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCceEEEEecCCCCCCCCCCCCcc-----------------------------------------Cc-----cc-
Q 003809 489 IQATLNARTSILAAANPAGGRYDKSKPLK-----------------------------------------KH-----ED- 521 (794)
Q Consensus 489 ~~~~l~ar~siiAaaNP~~Gryd~~~~l~-----------------------------------------~~-----~~- 521 (794)
|.++|++||++|||+||.+||||++.++. .+ +.
T Consensus 582 IVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~ 661 (854)
T KOG0477|consen 582 IVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDG 661 (854)
T ss_pred HHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCc
Confidence 99999999999999999999999988776 00 00
Q ss_pred ----ccC---ccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHH
Q 003809 522 ----ALA---PAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIAR 593 (794)
Q Consensus 522 ----~~~---~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Ar 593 (794)
.+. .+++.+.||+||.|||. ++|.|.+-..+++...|..||+... ...++|||+|.+|++||+|+||||
T Consensus 662 ~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~---~tGs~piTvRHieS~ir~seAhAr 738 (854)
T KOG0477|consen 662 LEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESM---ATGSLPITVRHIESMIRMSEAHAR 738 (854)
T ss_pred ccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhcc---ccCCchhhHHHHHHHHHHHHHHHH
Confidence 011 13788999999999996 8999999999999999999999865 445799999999999999999999
Q ss_pred hcCCCCcCHHHHHHHHHHHhhhcccccCC
Q 003809 594 SHLETQVHPRHVRVAVRLLKTSVISVESS 622 (794)
Q Consensus 594 l~~~~~V~~~dv~eAi~L~~~s~~~~~~~ 622 (794)
|++++.|+.+|+..||+.+.+|.++.++.
T Consensus 739 m~Lr~~V~~~d~~~AI~v~ldSfi~aQk~ 767 (854)
T KOG0477|consen 739 MHLREYVTEEDVDMAIRVMLDSFISAQKF 767 (854)
T ss_pred HHHHhhccHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877655
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=2.8e-86 Score=763.72 Aligned_cols=462 Identities=48% Similarity=0.786 Sum_probs=408.7
Q ss_pred ccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEecCCCceeeeeeccccccCCcCCCCCCCCCCCceeeccCCcee
Q 003809 119 KRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICANATCSNRTNWALLRQDSKF 198 (794)
Q Consensus 119 ~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C~~C~~~~~~v~q~~~~t~P~~C~~~~C~~~~~f~l~~~~S~f 198 (794)
.++|+|++.++||||+|+|+|+|+|.|+|++..++|+|..|++.+....+.++|++|..|+++.|+++++|.++.+.|+|
T Consensus 3 ~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~~~~f~l~~~~s~~ 82 (509)
T smart00350 3 SSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQSPTPFSLNHERSTF 82 (509)
T ss_pred CCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecCCcccCCCcCCCCcCCCCCceEeccCCCeE
Confidence 47899999999999999999999999999999999999999999887777889999999998889998889999999999
Q ss_pred EeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCEEEEEEEEEEeccccccCCCCCchhhhhhcccccCCccCC
Q 003809 199 ADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFTGTVVVIPDILAMGSPGERAECRREASQRKSSAVGH 278 (794)
Q Consensus 199 ~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~v~vtGil~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (794)
+|||+|||||.|+++|.|++||+|+|+|++||||+|+|||+|.|||||++.|.-. ..+ +.
T Consensus 83 ~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~--~~~-------------~~----- 142 (509)
T smart00350 83 IDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGF--KLN-------------TV----- 142 (509)
T ss_pred EEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeecccc--ccc-------------cC-----
Confidence 9999999999999999999999999999999999999999999999999875100 000 00
Q ss_pred CccccceecccccchhheeeeeceEeecCCCccccccccccccchhhccCCCHHHHHHHHHHHcCCchHHHhhhhcCCce
Q 003809 279 DGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADEEDQHQFTTEEIDEIQRMRNAPDFFNKIVDSIGPTV 358 (794)
Q Consensus 279 ~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~i~~~~~~~~i~~~l~~si~p~I 358 (794)
.+. ..|.+++.|++|...+...... + .......+|+++++.|+++++++++|+.|++||+|.|
T Consensus 143 ~~~----------~~~~~~l~a~~i~~~~~~~~~~------~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i 205 (509)
T smart00350 143 KGL----------PVFATYIEANHVRKLDYKRSFE------D-CSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSI 205 (509)
T ss_pred CCc----------ceeeEEEEEeEEEEcccccccc------c-cccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccc
Confidence 000 1267788888887654321100 0 0011246899999999999999999999999999999
Q ss_pred echhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCC
Q 003809 359 FGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPE 438 (794)
Q Consensus 359 ~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~ 438 (794)
+|++.+|+|++++|+||+.+...+|+++||++||||+|+||||||++|+++++++|+..|++|..++.+||++.+.+++.
T Consensus 206 ~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~ 285 (509)
T smart00350 206 YGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPE 285 (509)
T ss_pred cCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccC
Confidence 99999999999999999988889999999999999999999999999999999999999999988899999999999988
Q ss_pred CcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCcc-
Q 003809 439 TGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLK- 517 (794)
Q Consensus 439 ~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~- 517 (794)
+|+|.+++|++++|++|+||||||++|++..|.+|+++||+|++++.|+|+..++|++++||||+||.+|+||+.+++.
T Consensus 286 ~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~ 365 (509)
T smart00350 286 TREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEE 365 (509)
T ss_pred cceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886554
Q ss_pred --------------------------------C----c-------ccccCccccHHHHHHHHHHHhc-cCCcCCHHHHHH
Q 003809 518 --------------------------------K----H-------EDALAPAFTTAQLKRYIAYAKT-LKPKLSLEARKL 553 (794)
Q Consensus 518 --------------------------------~----~-------~~~~~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~ 553 (794)
+ . .....+.++.+.|++||.|||. +.|.+++++.++
T Consensus 366 n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~ 445 (509)
T smart00350 366 NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEK 445 (509)
T ss_pred ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 0 0 0112246889999999999998 999999999999
Q ss_pred HHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhcc
Q 003809 554 LVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVI 617 (794)
Q Consensus 554 L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~ 617 (794)
|.++|.++|...........+++|+|+|++|+|+|+|+|+|++++.|+++||++|++|++.|++
T Consensus 446 i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s~~ 509 (509)
T smart00350 446 LVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509 (509)
T ss_pred HHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHhhC
Confidence 9999999998654211124688999999999999999999999999999999999999999975
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=1.7e-61 Score=529.71 Aligned_cols=282 Identities=53% Similarity=0.862 Sum_probs=236.2
Q ss_pred HHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 333 EIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 333 e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
|++.|++++++|++|++|++||||+|+|++.+|+||+|+|+||+.+..++|++.||+|||||+|+||||||+|+++++++
T Consensus 1 d~~~i~~l~~~~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~ 80 (331)
T PF00493_consen 1 DEEKIKELSKKPNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKL 80 (331)
T ss_dssp THHHHHCCCCTTTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT
T ss_pred CHHHHHHHhcCCcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhh
Confidence 35788999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEe
Q 003809 413 VPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQAT 492 (794)
Q Consensus 413 ~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~ 492 (794)
+|+++|++|++++.+|||+++.+++.+++|.+++|++++||+|||||||||+|+.+++.+||++||||+++++|||+.++
T Consensus 81 ~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 81 APRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp -SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred CCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceEEEEecCCCCCCCCCCCCcc---------------------Cc----c-------------------ccc---Cc
Q 003809 493 LNARTSILAAANPAGGRYDKSKPLK---------------------KH----E-------------------DAL---AP 525 (794)
Q Consensus 493 l~ar~siiAaaNP~~Gryd~~~~l~---------------------~~----~-------------------~~~---~~ 525 (794)
+|+|++|+||+||..|||++.+++. .. | ... ..
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 9999999999999999999987765 00 0 001 13
Q ss_pred cccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 526 AFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 526 ~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
.++.+.||+||.||| .++|.|+++|.+.|.+||+.+|+.... .....++|+|+||+|||||+|+|||+++++|+++|
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~--~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~D 318 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKS--NNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEED 318 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHC--HSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccc--cccccccchhhHHHHHHHHHHHHHHhccCceeHHH
Confidence 688999999999999 799999999999999999999997621 14568899999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 003809 605 VRVAVRLLKTSV 616 (794)
Q Consensus 605 v~eAi~L~~~s~ 616 (794)
|.+|++|++.|+
T Consensus 319 v~~Ai~L~~~Sl 330 (331)
T PF00493_consen 319 VEEAIRLFEESL 330 (331)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999999986
No 11
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.8e-24 Score=238.41 Aligned_cols=243 Identities=23% Similarity=0.327 Sum_probs=179.3
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee----cCCccCcccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT----SGKSSSAAGLTA 431 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~~ss~~gLt~ 431 (794)
.+|.||+..|+|+.++..||+ |+||+||||||||+|++.+..++|..... .....+.+|.+.
T Consensus 179 ~DV~GQ~~AKrAleiAAAGgH--------------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~ 244 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGGH--------------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLH 244 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcCC--------------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccc
Confidence 478999999999999999999 99999999999999999999999985441 112222222111
Q ss_pred --------ccccCC---------CCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeec
Q 003809 432 --------SVAKEP---------ETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLN 494 (794)
Q Consensus 432 --------~v~~d~---------~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ 494 (794)
...+.+ .+|....+||.+.+||+||+||||+-.+.....++|.+.||+|.+.|++++...++|
T Consensus 245 ~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~yp 324 (490)
T COG0606 245 EGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYP 324 (490)
T ss_pred ccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEe
Confidence 011111 234466889999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCC-CCCCCCC-Ccc------------------Cc-c-----------ccc---CccccHHHHHHHHHHH
Q 003809 495 ARTSILAAANPAG-GRYDKSK-PLK------------------KH-E-----------DAL---APAFTTAQLKRYIAYA 539 (794)
Q Consensus 495 ar~siiAaaNP~~-Gryd~~~-~l~------------------~~-~-----------~~~---~~~~~~~~lr~yi~~a 539 (794)
++|++++|+|||+ |.|.... .+. ++ | +.. ...-+.+.++..+.+|
T Consensus 325 a~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~A 404 (490)
T COG0606 325 ARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKA 404 (490)
T ss_pred eeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHH
Confidence 9999999999998 4443322 222 00 0 111 1122567788888877
Q ss_pred hcc----CCc--CCHHHHHHHHHHHHHhccCCCCCC--CccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 540 KTL----KPK--LSLEARKLLVDSYVALRRGDTTPG--SRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 540 r~~----~P~--ls~ea~~~L~~~Y~~lR~~~~~~~--~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
|.. .-. ++.+......+.|+.+...+.... .-..+.+|.|...+++|+|+.+|.|.+++.|...|+.+|+.+
T Consensus 405 R~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 405 REAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred HHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhh
Confidence 731 111 344444444444666544332111 234578899999999999999999999999999999999987
Q ss_pred H
Q 003809 612 L 612 (794)
Q Consensus 612 ~ 612 (794)
-
T Consensus 485 R 485 (490)
T COG0606 485 R 485 (490)
T ss_pred h
Confidence 4
No 12
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.90 E-value=5.2e-23 Score=235.72 Aligned_cols=229 Identities=23% Similarity=0.335 Sum_probs=172.0
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee----ecCCccCcccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY----TSGKSSSAAGLTA 431 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g~~ss~~gLt~ 431 (794)
.+|+|++.+|+++.+++.+|+ |++|+|+||||||+|++.++.++|+... ......+.+|+..
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g~--------------~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~ 257 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGGH--------------NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLI 257 (499)
T ss_pred HHhcCcHHHHhhhhhhccCCC--------------EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhc
Confidence 468999999999999999887 8999999999999999999998876421 2222223333221
Q ss_pred c-------cccC---------CCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecC
Q 003809 432 S-------VAKE---------PETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 432 ~-------v~~d---------~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
. ..+. ..+|.+...||.+.+|++|+|||||++.+++..+..|+++||++.+++.++|....+++
T Consensus 258 ~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa 337 (499)
T TIGR00368 258 DRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPA 337 (499)
T ss_pred cccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccC
Confidence 0 0010 12355668899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCC-CCCCCCC-Ccc------------------Cc-c----------ccc---CccccHHHHHHHHHHHhc
Q 003809 496 RTSILAAANPAG-GRYDKSK-PLK------------------KH-E----------DAL---APAFTTAQLKRYIAYAKT 541 (794)
Q Consensus 496 r~siiAaaNP~~-Gryd~~~-~l~------------------~~-~----------~~~---~~~~~~~~lr~yi~~ar~ 541 (794)
+|.+|||+||++ |+|+... .+. .+ + ..+ ....+...++..+..||.
T Consensus 338 ~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~ 417 (499)
T TIGR00368 338 RFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKARE 417 (499)
T ss_pred CeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 999999999996 7886521 111 00 0 000 122466778888877763
Q ss_pred c-------------CCc-----------CCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCC
Q 003809 542 L-------------KPK-----------LSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLE 597 (794)
Q Consensus 542 ~-------------~P~-----------ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~ 597 (794)
. ++. +++++.+.|...|. ...+|.|...+++|+|+++|+|+++
T Consensus 418 ~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~-------------~~~lS~R~~~rilrvArTiAdL~g~ 484 (499)
T TIGR00368 418 IQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALN-------------KLGLSSRATHRILKVARTIADLKEE 484 (499)
T ss_pred HHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHH-------------hcCCCchHHHHHHHHHHHHHhhcCC
Confidence 2 111 23444444444433 2457899999999999999999999
Q ss_pred CCcCHHHHHHHHHH
Q 003809 598 TQVHPRHVRVAVRL 611 (794)
Q Consensus 598 ~~V~~~dv~eAi~L 611 (794)
+.|+.+||.+|+.+
T Consensus 485 ~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 485 KNISREHLAEAIEY 498 (499)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999975
No 13
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.88 E-value=7.1e-22 Score=233.99 Aligned_cols=238 Identities=22% Similarity=0.288 Sum_probs=178.9
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee---------------
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT--------------- 419 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~--------------- 419 (794)
++.|+||+.+|++++++++.+.. | +|||.|+||||||++++++++++|.....
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~-----g-------~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRI-----G-------GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCC-----C-------eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 46799999999999999997631 2 79999999999999999999999732111
Q ss_pred --------------------cCCccCcccccccc--ccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHh
Q 003809 420 --------------------SGKSSSAAGLTASV--AKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAM 477 (794)
Q Consensus 420 --------------------~g~~ss~~gLt~~v--~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eam 477 (794)
.....+...|++.+ .+...+|.+..++|.|..|++|||||||++++++..|..|+++|
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l 150 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA 150 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH
Confidence 00111111222221 11113467778899999999999999999999999999999999
Q ss_pred hccEEEEeecceEEeecCceEEEEecCCCCCCCCC--------CCCcc---Cccc---cc--------Cc-----cc--c
Q 003809 478 EQQTISITKAGIQATLNARTSILAAANPAGGRYDK--------SKPLK---KHED---AL--------AP-----AF--T 528 (794)
Q Consensus 478 e~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~--------~~~l~---~~~~---~~--------~~-----~~--~ 528 (794)
++|.+.+.+.|....+++++.+|||+||..|.+.. ...+. ..++ .+ .+ .| .
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 230 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAE 230 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhh
Confidence 99999999999999999999999999998764322 11111 0000 00 00 01 1
Q ss_pred HHHHHHHHHHHhccCC--cCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHH
Q 003809 529 TAQLKRYIAYAKTLKP--KLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVR 606 (794)
Q Consensus 529 ~~~lr~yi~~ar~~~P--~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~ 606 (794)
...++++|..++...| .+++++.++|...+..++.. +.|....++|+|+|+|.|++++.|+++||.
T Consensus 231 ~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~------------s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~ 298 (633)
T TIGR02442 231 QEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVD------------GHRADIVMARAARALAALDGRRRVTAEDVR 298 (633)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC------------CccHHHHHHHHHHHHHHHcCCCcCCHHHHH
Confidence 2356678888887554 67999999999999887421 369999999999999999999999999999
Q ss_pred HHHHHHh-hhc
Q 003809 607 VAVRLLK-TSV 616 (794)
Q Consensus 607 eAi~L~~-~s~ 616 (794)
+|+.+.- +++
T Consensus 299 ~A~~lvL~hR~ 309 (633)
T TIGR02442 299 EAAELVLPHRR 309 (633)
T ss_pred HHHHHHhhhhc
Confidence 9998854 444
No 14
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.88 E-value=1.1e-21 Score=224.05 Aligned_cols=230 Identities=23% Similarity=0.391 Sum_probs=169.4
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee----ecCCccCcccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY----TSGKSSSAAGLTA 431 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g~~ss~~gLt~ 431 (794)
..++|+..+|+++.+++.+|+ |++|+|+||+|||+|++.++.++|.... ......+.+|...
T Consensus 191 ~~v~Gq~~~~~al~laa~~G~--------------~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~ 256 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGGH--------------NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAES 256 (506)
T ss_pred EEEECcHHHHhhhheeccCCc--------------EEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcccc
Confidence 368899999999999999887 8999999999999999999999886422 1222223333211
Q ss_pred -------ccccCC---------CCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecC
Q 003809 432 -------SVAKEP---------ETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 432 -------~v~~d~---------~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
...+.+ .+|.+..+||.+.+|++|+|||||++.+++..+..|+++||+|.++|.++|...++|+
T Consensus 257 ~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa 336 (506)
T PRK09862 257 VQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPA 336 (506)
T ss_pred ccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccC
Confidence 111211 2456778999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCC-CCCCCCC-------------Ccc----Cc-c----------ccc----CccccHHHHHHHHHHHhcc
Q 003809 496 RTSILAAANPAG-GRYDKSK-------------PLK----KH-E----------DAL----APAFTTAQLKRYIAYAKTL 542 (794)
Q Consensus 496 r~siiAaaNP~~-Gryd~~~-------------~l~----~~-~----------~~~----~~~~~~~~lr~yi~~ar~~ 542 (794)
+|.+|||+||++ |.|.... .+. .+ + +.+ ....+...+++.+..||.+
T Consensus 337 ~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~ 416 (506)
T PRK09862 337 RFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARER 416 (506)
T ss_pred CEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHH
Confidence 999999999995 7775432 011 00 0 000 1123455566555544421
Q ss_pred --------CC-----------cCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHH
Q 003809 543 --------KP-----------KLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPR 603 (794)
Q Consensus 543 --------~P-----------~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~ 603 (794)
+- .++.++...+..+| ...++|.|...+++|+|+++|.|++++.|+++
T Consensus 417 q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~-------------~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~ 483 (506)
T PRK09862 417 QFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETL-------------IHLGLSIRAWQRLLKVARTIADIDQSDIITRQ 483 (506)
T ss_pred HHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 21 22333333333332 23468899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003809 604 HVRVAVRLL 612 (794)
Q Consensus 604 dv~eAi~L~ 612 (794)
||.+|+.+.
T Consensus 484 hv~eAl~yR 492 (506)
T PRK09862 484 HLQEAVSYR 492 (506)
T ss_pred HHHHHHHhh
Confidence 999999985
No 15
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.87 E-value=2.1e-22 Score=203.77 Aligned_cols=143 Identities=27% Similarity=0.422 Sum_probs=103.4
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee----cCCccCccccc
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT----SGKSSSAAGLT 430 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~~ss~~gLt 430 (794)
+.+|.||+.+|+|++++.+|++ |+||+|+||||||++++.+..++|..... ..+..+.+|+.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~h--------------~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~ 67 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGGH--------------HLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLG 67 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S
T ss_pred hhhhcCcHHHHHHHHHHHcCCC--------------CeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCC
Confidence 4579999999999999999998 99999999999999999999999986543 22333333311
Q ss_pred c--c-----cccCC---------CCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeec
Q 003809 431 A--S-----VAKEP---------ETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLN 494 (794)
Q Consensus 431 ~--~-----v~~d~---------~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ 494 (794)
. . ..+.+ .+|....+||.+.+||+||||+||+..+++....+|+++||++.+++.++|...++|
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~P 147 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYP 147 (206)
T ss_dssp ---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB
T ss_pred CCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEe
Confidence 1 0 11111 134447899999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCC-CCCC
Q 003809 495 ARTSILAAANPAG-GRYD 511 (794)
Q Consensus 495 ar~siiAaaNP~~-Gryd 511 (794)
++|.++||+||++ |.|.
T Consensus 148 a~f~lv~a~NPcpCG~~~ 165 (206)
T PF01078_consen 148 ARFLLVAAMNPCPCGYYG 165 (206)
T ss_dssp --EEEEEEE-S-------
T ss_pred cccEEEEEeccccccccc
Confidence 9999999999998 4543
No 16
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.87 E-value=5.3e-21 Score=209.34 Aligned_cols=239 Identities=21% Similarity=0.283 Sum_probs=176.2
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC------------
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK------------ 422 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~------------ 422 (794)
+..|.||+.+|+++++.++.... | |+||.|+||+|||+|++.++.+.|..--..+.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~-----g-------~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKI-----G-------GVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCC-----C-------eEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 45799999999999999987431 1 89999999999999999999998642110000
Q ss_pred ----------------------------ccCccccccccccC--CCCcccccccCceeecCCCeEEecccccCChhhHHH
Q 003809 423 ----------------------------SSSAAGLTASVAKE--PETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVA 472 (794)
Q Consensus 423 ----------------------------~ss~~gLt~~v~~d--~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~ 472 (794)
+.+...|++.+.-+ -.+|.+.+++|.+..|++|++||||++++++..|..
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~ 150 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDV 150 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHH
Confidence 00111233332211 136889999999999999999999999999999999
Q ss_pred HHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCC--------CCCcc--Cc-cc---------cc--Ccc----
Q 003809 473 IHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDK--------SKPLK--KH-ED---------AL--APA---- 526 (794)
Q Consensus 473 L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~--------~~~l~--~~-~~---------~~--~~~---- 526 (794)
|+++|+++.+++.+.|....+++++.++|++||..|.+.. ...+. .. ++ .. .+.
T Consensus 151 Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~ 230 (337)
T TIGR02030 151 LLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCE 230 (337)
T ss_pred HHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhh
Confidence 9999999988888889999999999999999998764322 11111 00 00 00 000
Q ss_pred -c--cHHHHHHHHHHHhcc--CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcC
Q 003809 527 -F--TTAQLKRYIAYAKTL--KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVH 601 (794)
Q Consensus 527 -~--~~~~lr~yi~~ar~~--~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~ 601 (794)
+ ....+.+.|..++.. ...+++++.+++.+....+|.. ++|....++|.|+|+|.+++++.|+
T Consensus 231 ~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~------------s~Ra~i~l~raArA~Aal~GR~~V~ 298 (337)
T TIGR02030 231 KWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD------------GLRGELTLNRAAKALAAFEGRTEVT 298 (337)
T ss_pred hhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC------------CCcHHHHHHHHHHHHHHHcCCCCCC
Confidence 0 012345666777753 3458999999999988877622 4599999999999999999999999
Q ss_pred HHHHHHHHHH-Hhhhcc
Q 003809 602 PRHVRVAVRL-LKTSVI 617 (794)
Q Consensus 602 ~~dv~eAi~L-~~~s~~ 617 (794)
++||+.|..+ +.+++.
T Consensus 299 ~dDv~~~a~~vL~HR~~ 315 (337)
T TIGR02030 299 VDDIRRVAVLALRHRLR 315 (337)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 9999997776 455553
No 17
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.87 E-value=6.2e-21 Score=208.39 Aligned_cols=236 Identities=21% Similarity=0.266 Sum_probs=170.8
Q ss_pred CceechhhHHHHHHHHHh--CCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC-----------
Q 003809 356 PTVFGHQDIKRAILLMLL--GGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK----------- 422 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~--gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~----------- 422 (794)
..|.|++.+|++++++++ |+. |+||.|+||||||++++.++.++|......+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~--------------~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~ 73 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIG--------------GVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCP 73 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCC--------------cEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCc
Confidence 468999999999998875 433 89999999999999999999999852222111
Q ss_pred ----------------------ccCccccccccccCC--CCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhh
Q 003809 423 ----------------------SSSAAGLTASVAKEP--ETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAME 478 (794)
Q Consensus 423 ----------------------~ss~~gLt~~v~~d~--~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame 478 (794)
..+...|++++.-+. .+|++.+++|.+..|++|++||||++.++++.|..|+++|+
T Consensus 74 ~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~me 153 (334)
T PRK13407 74 EWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQ 153 (334)
T ss_pred ccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHH
Confidence 001111333222111 25888899999999999999999999999999999999999
Q ss_pred ccEEEEeecceEEeecCceEEEEecCCCCCCC--------CCCCCcc--Cc-cc---------ccC--c-----cc--cH
Q 003809 479 QQTISITKAGIQATLNARTSILAAANPAGGRY--------DKSKPLK--KH-ED---------ALA--P-----AF--TT 529 (794)
Q Consensus 479 ~~~isi~kaG~~~~l~ar~siiAaaNP~~Gry--------d~~~~l~--~~-~~---------~~~--~-----~~--~~ 529 (794)
++.+++.+.|....+++++.++||+||..|.+ .....+. .. ++ ... + .+ ..
T Consensus 154 e~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~ 233 (334)
T PRK13407 154 SGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAED 233 (334)
T ss_pred cCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccc
Confidence 99999989999999999999999999976532 2111111 00 00 000 0 00 11
Q ss_pred HHHHHHHHHHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Q 003809 530 AQLKRYIAYAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRV 607 (794)
Q Consensus 530 ~~lr~yi~~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~e 607 (794)
.....-|..+|. -...++++...++.+.....|.. ++|....++|.|+|.|.+++++.|+++||+.
T Consensus 234 ~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~------------s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~ 301 (334)
T PRK13407 234 MQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSD------------GLRGELTLLRAARALAAFEGAEAVGRSHLRS 301 (334)
T ss_pred cCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCC------------CchHHHHHHHHHHHHHHHcCCCeeCHHHHHH
Confidence 122344555554 24567888888888888777643 4688888999999999999999999999977
Q ss_pred HHH-HHhhhcc
Q 003809 608 AVR-LLKTSVI 617 (794)
Q Consensus 608 Ai~-L~~~s~~ 617 (794)
+.. .+.+++.
T Consensus 302 ~~~~vl~hR~~ 312 (334)
T PRK13407 302 VATMALSHRLR 312 (334)
T ss_pred HHHHhhhhhcc
Confidence 554 4555554
No 18
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.86 E-value=9.8e-21 Score=222.09 Aligned_cols=232 Identities=21% Similarity=0.250 Sum_probs=176.8
Q ss_pred hhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcce-ee-cCCccCccccccccc--cCC
Q 003809 362 QDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSV-YT-SGKSSSAAGLTASVA--KEP 437 (794)
Q Consensus 362 e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~-~~-~g~~ss~~gLt~~v~--~d~ 437 (794)
+.+|+|++|..+...- | ||||.|+||||||++++++++.+|+.. |. .....+...|++.+. ...
T Consensus 1 ~~~~~Al~l~av~p~~-----g-------~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~ 68 (589)
T TIGR02031 1 ERAKLALTLLAVDPSL-----G-------GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESL 68 (589)
T ss_pred ChHHHHHHHhccCCCc-----c-------eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhh
Confidence 4689999999888752 2 899999999999999999999998742 22 222223334444321 112
Q ss_pred CCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC--CCCCC---
Q 003809 438 ETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG--GRYDK--- 512 (794)
Q Consensus 438 ~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~--Gryd~--- 512 (794)
.+|.|.+++|.+..|++|++||||++++++..|..|+++|+++.+++.+.|....++++|.+|||+||.. |++..
T Consensus 69 ~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Ll 148 (589)
T TIGR02031 69 AGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLL 148 (589)
T ss_pred hcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999999999986 43311
Q ss_pred -----CCCcc---Ccc---ccc---------CccccHHHHHHHHHHHhccCC--cCCHHHHHHHHHHHHHhccCCCCCCC
Q 003809 513 -----SKPLK---KHE---DAL---------APAFTTAQLKRYIAYAKTLKP--KLSLEARKLLVDSYVALRRGDTTPGS 570 (794)
Q Consensus 513 -----~~~l~---~~~---~~~---------~~~~~~~~lr~yi~~ar~~~P--~ls~ea~~~L~~~Y~~lR~~~~~~~~ 570 (794)
...+. ..+ +.+ ........++.+|..||...| .+++++.++|.+.+..+..
T Consensus 149 dRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv------- 221 (589)
T TIGR02031 149 DRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI------- 221 (589)
T ss_pred HhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC-------
Confidence 11111 000 000 001234567788889987554 6799999999998866532
Q ss_pred ccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH-hhhcc
Q 003809 571 RVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL-KTSVI 617 (794)
Q Consensus 571 ~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~-~~s~~ 617 (794)
-+.|....++|+|+|+|.|++++.|+++||.+|+.+. .+++.
T Consensus 222 -----~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~ 264 (589)
T TIGR02031 222 -----SGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRAT 264 (589)
T ss_pred -----CCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhcc
Confidence 1369999999999999999999999999999998875 44553
No 19
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.85 E-value=1.2e-20 Score=206.51 Aligned_cols=238 Identities=20% Similarity=0.281 Sum_probs=172.3
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC-------------
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK------------- 422 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~------------- 422 (794)
..|.||+.+|+||+++++...- | ++||.|++|||||++++.+++++|......+.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~-----~-------~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKI-----G-------GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMS 84 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCC-----C-------eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhc
Confidence 4699999999999999987532 2 69999999999999999999998753211111
Q ss_pred ---------------------------ccCccccccc--cccCCCCcccccccCceeecCCCeEEecccccCChhhHHHH
Q 003809 423 ---------------------------SSSAAGLTAS--VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAI 473 (794)
Q Consensus 423 ---------------------------~ss~~gLt~~--v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L 473 (794)
+.+...|++. +.+...+|.+.+++|.+..|++|++||||++++++..|..|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~L 164 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDIL 164 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHH
Confidence 0000011111 01111346677789999999999999999999999999999
Q ss_pred HHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCC--------CCcc--C-cccc---c----Cccc-cH-----
Q 003809 474 HEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKS--------KPLK--K-HEDA---L----APAF-TT----- 529 (794)
Q Consensus 474 ~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~--------~~l~--~-~~~~---~----~~~~-~~----- 529 (794)
+++|+++.+++.+.|....+++++.++||.||..|.+... ..+. . .+.. + .... +.
T Consensus 165 Leam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~ 244 (350)
T CHL00081 165 LDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREK 244 (350)
T ss_pred HHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhh
Confidence 9999999999988899999999999999999998654321 1111 0 0000 0 0000 01
Q ss_pred -----HHHHHHHHHHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCH
Q 003809 530 -----AQLKRYIAYAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHP 602 (794)
Q Consensus 530 -----~~lr~yi~~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~ 602 (794)
..+..-|..+|. -...++++...+|.+....+|.. ++|....++|.|+|+|.+++++.|++
T Consensus 245 ~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~------------s~Ra~i~l~raArA~Aal~GR~~V~p 312 (350)
T CHL00081 245 YEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVD------------GLRGDIVTNRAAKALAAFEGRTEVTP 312 (350)
T ss_pred hccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCC------------CChHHHHHHHHHHHHHHHcCCCCCCH
Confidence 112334444554 24567899999998888877642 47999999999999999999999999
Q ss_pred HHHHHHHHH-Hhhhcc
Q 003809 603 RHVRVAVRL-LKTSVI 617 (794)
Q Consensus 603 ~dv~eAi~L-~~~s~~ 617 (794)
+||+.|..+ +.+++.
T Consensus 313 dDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 313 KDIFKVITLCLRHRLR 328 (350)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 999997665 556664
No 20
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.82 E-value=4.3e-19 Score=199.45 Aligned_cols=246 Identities=17% Similarity=0.186 Sum_probs=180.7
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCc
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKS 423 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ 423 (794)
+.+|.+.+...|+|++++.+.+++++..|. |+||.|+||||||+++++++..+.+. .+.....
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aalag~--------------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~f 76 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAALSGE--------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF 76 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHccCC--------------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeee
Confidence 567888899999999999998888888776 89999999999999999999987653 2222222
Q ss_pred cCcccccccc-ccC-CCCcccc-cccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEE
Q 003809 424 SSAAGLTASV-AKE-PETGEFC-IEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSIL 500 (794)
Q Consensus 424 ss~~gLt~~v-~~d-~~~g~~~-~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~sii 500 (794)
+++.++++.. .+. ...|.|. ..+|.+..++ ++|+|||++++++.|++|+++|+++.+++ .|....+|.++.++
T Consensus 77 ttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv~ 152 (498)
T PRK13531 77 STPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVT 152 (498)
T ss_pred cCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEEE
Confidence 3455676643 222 2356663 6678776666 99999999999999999999999999987 47888999888888
Q ss_pred EecCCCCC-------CCCCC---CCcc--C-ccc----------------ccCccccHHHHHHHHHHHhccCCcCCHHHH
Q 003809 501 AAANPAGG-------RYDKS---KPLK--K-HED----------------ALAPAFTTAQLKRYIAYAKTLKPKLSLEAR 551 (794)
Q Consensus 501 AaaNP~~G-------ryd~~---~~l~--~-~~~----------------~~~~~~~~~~lr~yi~~ar~~~P~ls~ea~ 551 (794)
|+ ||.+. -||+- ..+. . .++ ...+.++.+++...-..++.+ .+++...
T Consensus 153 AT-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V--~v~d~v~ 229 (498)
T PRK13531 153 AS-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKI--TLPDHVF 229 (498)
T ss_pred EC-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcce--eCCHHHH
Confidence 87 88762 23332 1111 0 000 012235667776666655544 5677777
Q ss_pred HHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhcccc
Q 003809 552 KLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVISV 619 (794)
Q Consensus 552 ~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~~~ 619 (794)
++|.+.-..+|.... ...+|+|....++++++|.|-+++|+.|+++||.-|...+.+++-+.
T Consensus 230 eyI~~L~~~lr~~r~------~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll~~vL~HRl~~~ 291 (498)
T PRK13531 230 ELIFQLRQQLDALPN------APYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILLKDCLWHDAQSL 291 (498)
T ss_pred HHHHHHHHHHhcCCC------CCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHhHHHhccCHHHH
Confidence 777766655554321 12389999999999999999999999999999997777777766443
No 21
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.79 E-value=1.4e-18 Score=189.97 Aligned_cols=235 Identities=22% Similarity=0.270 Sum_probs=169.7
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccC--------
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSS-------- 425 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss-------- 425 (794)
.+..|.|++.+|++|++..+...- | .+||-|+.|||||+++|+++.++|....+.|.-..
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~i-----g-------gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQI-----G-------GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhhccccc-----c-------eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 556799999999999998554321 2 68999999999999999999999987654333110
Q ss_pred -----------------------ccc---------cccc--cccCCCCcccccccCceeecCCCeEEecccccCChhhHH
Q 003809 426 -----------------------AAG---------LTAS--VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQV 471 (794)
Q Consensus 426 -----------------------~~g---------Lt~~--v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~ 471 (794)
..+ +.++ +.+....|...++||.|..||+||+++||++.++...++
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd 162 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVD 162 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHH
Confidence 001 1111 111113477788999999999999999999999999999
Q ss_pred HHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCC--------CCCCCcc------------Cccccc--Cccc--
Q 003809 472 AIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRY--------DKSKPLK------------KHEDAL--APAF-- 527 (794)
Q Consensus 472 ~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gry--------d~~~~l~------------~~~~~~--~~~~-- 527 (794)
.||.+++.|.-.+...|+..++|++|.+|||+||..|.. ....... .+.... .|.+
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~ 242 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFL 242 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHH
Confidence 999999998777777899999999999999999998743 2222111 111111 1111
Q ss_pred -----cHHHHHHHHHHHhcc--CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCc
Q 003809 528 -----TTAQLKRYIAYAKTL--KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQV 600 (794)
Q Consensus 528 -----~~~~lr~yi~~ar~~--~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V 600 (794)
....||..+.-||+. ...++..+..++.+...++--.. .|.-..+.|.|.|+|.+.++.+|
T Consensus 243 ~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g------------~radi~~~r~a~a~aa~~Gr~~v 310 (423)
T COG1239 243 EKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG------------HRADIVVVRAAKALAALRGRTEV 310 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC------------CchhhHHHHHHHHHHHhcCceee
Confidence 123355555556654 34567777777776555442221 36777899999999999999999
Q ss_pred CHHHHHHHHHHH
Q 003809 601 HPRHVRVAVRLL 612 (794)
Q Consensus 601 ~~~dv~eAi~L~ 612 (794)
+.+|+.+|..|-
T Consensus 311 ~~~Di~~a~~l~ 322 (423)
T COG1239 311 EEEDIREAAELA 322 (423)
T ss_pred ehhhHHHHHhhh
Confidence 999999999884
No 22
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.77 E-value=1.3e-17 Score=194.23 Aligned_cols=229 Identities=18% Similarity=0.202 Sum_probs=168.1
Q ss_pred hhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc--ceeecCCccCcccccccc--ccC
Q 003809 361 HQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR--SVYTSGKSSSAAGLTASV--AKE 436 (794)
Q Consensus 361 ~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~--~~~~~g~~ss~~gLt~~v--~~d 436 (794)
++.+|.|++|..+..+.. | .|||.|++||+||++++.+..++|. .+.....+.+...|.+.. ...
T Consensus 8 ~~~~~~Al~l~av~p~~~----g-------Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPAGL----G-------GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCcccc----c-------eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 889999999998876311 1 5899999999999999999999987 344444444555555432 111
Q ss_pred CCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC--------
Q 003809 437 PETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG-------- 508 (794)
Q Consensus 437 ~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G-------- 508 (794)
-..|...++||.|.+||+|||||||++.+++..+.+|+++|+.|.++|.++|...++|++|.+||+.||..-
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~l 156 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAAL 156 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHh
Confidence 134565689999999999999999999999999999999999999999999999999999999999887621
Q ss_pred --CCCCCCCcc--CcccccCccccHHHHHHHHHHHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCcccccc-CHHHH
Q 003809 509 --RYDKSKPLK--KHEDALAPAFTTAQLKRYIAYAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRM-TVRQL 581 (794)
Q Consensus 509 --ryd~~~~l~--~~~~~~~~~~~~~~lr~yi~~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~i-T~R~L 581 (794)
||+-...+. ...+...+..+.+ -|..||. -+..++++...++...+.. +.+ |.|..
T Consensus 157 LDRf~l~v~v~~~~~~~~~~~~~~~~----~I~~AR~rl~~v~v~~~~l~~i~~~~~~-------------~gv~S~Ra~ 219 (584)
T PRK13406 157 ADRLAFHLDLDGLALRDAREIPIDAD----DIAAARARLPAVGPPPEAIAALCAAAAA-------------LGIASLRAP 219 (584)
T ss_pred HhheEEEEEcCCCChHHhcccCCCHH----HHHHHHHHHccCCCCHHHHHHHHHHHHH-------------hCCCCcCHH
Confidence 222211111 0011111222222 3444443 2456788766666554443 344 78999
Q ss_pred HHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH-hhhcc
Q 003809 582 EALIRLSEAIARSHLETQVHPRHVRVAVRLL-KTSVI 617 (794)
Q Consensus 582 esliRlseA~Arl~~~~~V~~~dv~eAi~L~-~~s~~ 617 (794)
..++|+|+|+|.|++++.|+++||.+|..+. .+++.
T Consensus 220 i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~~ 256 (584)
T PRK13406 220 LLALRAARAAAALAGRTAVEEEDLALAARLVLAPRAT 256 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999988774 44554
No 23
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.75 E-value=1.6e-18 Score=162.54 Aligned_cols=116 Identities=31% Similarity=0.596 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 003809 16 VENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLLQKAIADEYLRFEPYLKNACKRFVMEQN 95 (794)
Q Consensus 16 v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~fd~~La~~I~~~p~r~l~~l~~al~~~v~~~~ 95 (794)
|+++|.+||.+|.. .++|+++|++|...+..+|+|||.||.+|++.||.+|.++|.+++|+|++|+++++.+..
T Consensus 1 i~~~F~~Fl~~f~~------~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~ 74 (121)
T PF14551_consen 1 IKRRFREFLREFKE------EPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELF 74 (121)
T ss_dssp --HHHHHHCCCH-T------S-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT-
T ss_pred ChHHHHHHHHcCCC------chHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999863 578999999999999999999999999999999999999999999999999999998753
Q ss_pred C-----CCCCCCCCCccEEEEeeeCCCcccccccCccccCcEEEEEE
Q 003809 96 P-----NFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTG 137 (794)
Q Consensus 96 ~-----~~~~~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G 137 (794)
. .........+.++|+|+|+|...++|+|++.+||+||+|+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 75 PSEQQSSFPPELKRRKEIQVRFYNLPKSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp ---------GCCTTTS--EEEEES-S-EE-GGG-SGGGTTSEEEEEE
T ss_pred hhhcccCCchhhccceeEEEEEcCCCCCcCcCCCChHHCCCEEEEeC
Confidence 2 11111223578999999999999999999999999999999
No 24
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.72 E-value=2.7e-16 Score=173.02 Aligned_cols=244 Identities=24% Similarity=0.300 Sum_probs=179.3
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee--cCCcc
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT--SGKSS 424 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~--~g~~s 424 (794)
...+...+.+.++|.+.++..+++++..|. |+||.|+||||||+|++.+++.+....+. .....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~--------------~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAGG--------------HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcCC--------------CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 455667788889999999999998888876 89999999999999999999998765443 33344
Q ss_pred CccccccccccCCC---CcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceE-EeecCceEEE
Q 003809 425 SAAGLTASVAKEPE---TGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQ-ATLNARTSIL 500 (794)
Q Consensus 425 s~~gLt~~v~~d~~---~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~-~~l~ar~sii 500 (794)
.+.++++....... .+.+.+.+|.+..+.++|+++|||++.+++.+++|+++|+.+.+++. |.. ..++..+.++
T Consensus 81 ~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~--~~~~~~~~~~f~vi 158 (329)
T COG0714 81 LPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVP--GLTTIRLPPPFIVI 158 (329)
T ss_pred CHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEEC--CcCCcCCCCCCEEE
Confidence 55566665544443 67788899999998889999999999999999999999999999987 555 7888899999
Q ss_pred EecCCCCCCCCCCCCcc----Cc------------c--c-cc---Cccc----cHHHHHHHH------HHHhcc-CCcCC
Q 003809 501 AAANPAGGRYDKSKPLK----KH------------E--D-AL---APAF----TTAQLKRYI------AYAKTL-KPKLS 547 (794)
Q Consensus 501 AaaNP~~Gryd~~~~l~----~~------------~--~-~~---~~~~----~~~~lr~yi------~~ar~~-~P~ls 547 (794)
||+||.. |....++. .+ . + .+ ...+ ....++..+ .....+ +..++
T Consensus 159 aT~Np~e--~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 236 (329)
T COG0714 159 ATQNPGE--YEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVS 236 (329)
T ss_pred EccCccc--cCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCch
Confidence 9999865 33333332 00 0 0 00 0000 011111111 111122 46677
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHh
Q 003809 548 LEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLK 613 (794)
Q Consensus 548 ~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~ 613 (794)
+++.+.+.......|.... .....++|....++..+.+.|.+.++..+.++|+.......-
T Consensus 237 ~~~~~~~~~l~~~~~~~~~-----~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~ 297 (329)
T COG0714 237 DEVIDYIVTLVAALREAPD-----VALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPAL 297 (329)
T ss_pred HHHHHHHHHHHHhhccccc-----hhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhh
Confidence 7878777777777765532 346688999999999999999999999999999988554433
No 25
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.71 E-value=2.2e-16 Score=185.81 Aligned_cols=168 Identities=22% Similarity=0.264 Sum_probs=122.0
Q ss_pred cccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecc-----e---EEeecCceEEEEecCCCC-CCCCCCC
Q 003809 444 IEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAG-----I---QATLNARTSILAAANPAG-GRYDKSK 514 (794)
Q Consensus 444 ~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG-----~---~~~l~ar~siiAaaNP~~-Gryd~~~ 514 (794)
+++|++..|++|++||||++.|++..|..|+++|+++++.+.... . ....|+++.+|+++||.. ..+++..
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l 287 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPAL 287 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHH
Confidence 579999999999999999999999999999999999999886321 1 234678999999999862 1222211
Q ss_pred CccCc----cccc--CccccHHHHHHHHHHH----hc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHH
Q 003809 515 PLKKH----EDAL--APAFTTAQLKRYIAYA----KT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLE 582 (794)
Q Consensus 515 ~l~~~----~~~~--~~~~~~~~lr~yi~~a----r~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~Le 582 (794)
.-+.. .-.+ ..+.+.+....|..|. +. ..|.++++|...|+++|.++ .. .+..++++.|+|.
T Consensus 288 ~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~-ag-----~r~~lsl~~R~L~ 361 (608)
T TIGR00764 288 RSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRR-AG-----RKDHLTLRLRELG 361 (608)
T ss_pred HHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHH-Hh-----cccccCCCHHHHH
Confidence 00000 0001 1112233333333332 22 46899999999999998875 22 2346889999999
Q ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhcc
Q 003809 583 ALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVI 617 (794)
Q Consensus 583 sliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~ 617 (794)
+++|.|.++|+.+.++.|+.+||++|++..+.+.-
T Consensus 362 ~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~~ 396 (608)
T TIGR00764 362 GLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLEK 396 (608)
T ss_pred HHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988766443
No 26
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.65 E-value=7.9e-15 Score=170.74 Aligned_cols=249 Identities=16% Similarity=0.226 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHc---CCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHH
Q 003809 331 TEEIDEIQRMRN---APDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLK 407 (794)
Q Consensus 331 ~~e~~~i~~~~~---~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~ 407 (794)
.+|++++++|.+ ...+-++..-.-+.+++|++...+++..++++.... |+||+||||||||++|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~------------~vLi~Ge~GtGKt~lAr 104 (531)
T TIGR02902 37 KKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQ------------HVIIYGPPGVGKTAAAR 104 (531)
T ss_pred hHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCc------------eEEEECCCCCCHHHHHH
Confidence 355566666543 444555544444447999999999888887776432 99999999999999999
Q ss_pred HHHhhCCc----------ceeecCCc---cCccccccccc---cCC---------CCcccccccCceeecCCCeEEeccc
Q 003809 408 YAAGIVPR----------SVYTSGKS---SSAAGLTASVA---KEP---------ETGEFCIEAGALMLADNGICCIDEF 462 (794)
Q Consensus 408 ~i~~~~p~----------~~~~~g~~---ss~~gLt~~v~---~d~---------~~g~~~~~~Gal~lad~GIl~IDE~ 462 (794)
++++.+.+ ..+..... ....++...+. .++ .+|....++|.+..|++|++||||+
T Consensus 105 ~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI 184 (531)
T TIGR02902 105 LVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEI 184 (531)
T ss_pred HHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEech
Confidence 99875321 11111000 01111111111 111 1223345688999999999999999
Q ss_pred ccCChhhHHHHHHHhhccEEEEeecce---------------EEeecCceEEEEecCCCCCCCCCCCCccCc-ccccCcc
Q 003809 463 DKMDIRDQVAIHEAMEQQTISITKAGI---------------QATLNARTSILAAANPAGGRYDKSKPLKKH-EDALAPA 526 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~isi~kaG~---------------~~~l~ar~siiAaaNP~~Gryd~~~~l~~~-~~~~~~~ 526 (794)
+.|++..|+.|+.+||++.+.+..+.. ...+++++.+|+|||..+....+ .++.+ ....-++
T Consensus 185 ~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~p--aLrsR~~~I~f~p 262 (531)
T TIGR02902 185 GELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPP--ALRSRCVEIFFRP 262 (531)
T ss_pred hhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCCh--HHhhhhheeeCCC
Confidence 999999999999999999887642111 23467889999888765432221 12111 1122344
Q ss_pred ccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Q 003809 527 FTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHV 605 (794)
Q Consensus 527 ~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv 605 (794)
++.+++...+..+ +.....+++++.+.|..|.. +.|++.++++.|..+|..+.+..|+.+|+
T Consensus 263 L~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-----------------n~Rel~nll~~Aa~~A~~~~~~~It~~dI 325 (531)
T TIGR02902 263 LLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-----------------NGREAVNIVQLAAGIALGEGRKRILAEDI 325 (531)
T ss_pred CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHhhCCCcEEcHHHH
Confidence 5666666666554 45677899999887765321 35999999999999998888889999999
Q ss_pred HHHHH
Q 003809 606 RVAVR 610 (794)
Q Consensus 606 ~eAi~ 610 (794)
.+++.
T Consensus 326 ~~vl~ 330 (531)
T TIGR02902 326 EWVAE 330 (531)
T ss_pred HHHhC
Confidence 99964
No 27
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.64 E-value=4.4e-15 Score=158.31 Aligned_cols=211 Identities=14% Similarity=0.158 Sum_probs=133.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee-cCC-ccCccccccccc----------------cCCCCcccccccCceeec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGK-SSSAAGLTASVA----------------KEPETGEFCIEAGALMLA 452 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~-~ss~~gLt~~v~----------------~d~~~g~~~~~~Gal~la 452 (794)
|+||.|+||||||++++++++.+...+.. .+. ......+.+... +..........+|.+..|
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 89999999999999999999877655442 211 111122222110 000111122357777754
Q ss_pred --CCCeEEecccccCChhhHHHHHHHhhccEEEEeec---ceEEeecCceEEEEecCCCC--CCCCCCCCccCcccccCc
Q 003809 453 --DNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKA---GIQATLNARTSILAAANPAG--GRYDKSKPLKKHEDALAP 525 (794)
Q Consensus 453 --d~GIl~IDE~dk~~~~~~~~L~eame~~~isi~ka---G~~~~l~ar~siiAaaNP~~--Gryd~~~~l~~~~~~~~~ 525 (794)
.+++|+|||+++++++.++.|+++|+++.+++... +.....+.++.+|||+||.. |.+.....+..+-..+.-
T Consensus 103 ~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i 182 (262)
T TIGR02640 103 VREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFM 182 (262)
T ss_pred HHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEEC
Confidence 78999999999999999999999999999888632 23345667899999999974 333322222211111111
Q ss_pred cc-cHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 526 AF-TTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 526 ~~-~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
.+ +.+...+.+. .+ ..++++..+.+++.+..+|.... ....++|.+..+.|.+.+ +.++..|+++|
T Consensus 183 ~~P~~~~e~~Il~-~~---~~~~~~~~~~iv~~~~~~R~~~~------~~~~~~r~~i~~~~~~~~---~~~~~~~~~~~ 249 (262)
T TIGR02640 183 DYPDIDTETAILR-AK---TDVAEDSAATIVRLVREFRASGD------EITSGLRASLMIAEVATQ---QDIPVDVDDED 249 (262)
T ss_pred CCCCHHHHHHHHH-Hh---hCCCHHHHHHHHHHHHHHHhhCC------ccCCcHHHHHHHHHHHHH---cCCCCCCCcHH
Confidence 12 3333333322 22 25788999999999999993221 234568887655555544 47799999999
Q ss_pred HHHH-HHHHhh
Q 003809 605 VRVA-VRLLKT 614 (794)
Q Consensus 605 v~eA-i~L~~~ 614 (794)
+.+. ..++.+
T Consensus 250 ~~~~~~~~~~~ 260 (262)
T TIGR02640 250 FVDLCIDILAS 260 (262)
T ss_pred HHHHHHHHhcc
Confidence 9884 444433
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.63 E-value=2.3e-15 Score=153.78 Aligned_cols=199 Identities=20% Similarity=0.266 Sum_probs=119.3
Q ss_pred HHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCCccCc
Q 003809 348 NKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSSA 426 (794)
Q Consensus 348 ~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss~ 426 (794)
..+.-.-.-+++||+.++..+-+.+-....+... --|+||+||||+|||+||+.+++.+...+.. +|.....
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~-------l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEA-------LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCC-------cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 3444445568999999988654443321100000 0199999999999999999999998877653 3321111
Q ss_pred cccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEe-ecc-----eEEeecCceEEE
Q 003809 427 AGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISIT-KAG-----IQATLNARTSIL 500 (794)
Q Consensus 427 ~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~-kaG-----~~~~l~ar~sii 500 (794)
.+-.+.+. ..+..+-|+|||||+++++..|..|+.+||++.+.+. .+| +...+| +|++|
T Consensus 89 ~~dl~~il--------------~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~-~FTli 153 (233)
T PF05496_consen 89 AGDLAAIL--------------TNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP-PFTLI 153 (233)
T ss_dssp CHHHHHHH--------------HT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-----EEE
T ss_pred HHHHHHHH--------------HhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC-CceEe
Confidence 11111111 1123567999999999999999999999999999653 334 223333 79999
Q ss_pred EecCCCC-------CCCCCCCCccCcccccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCcc
Q 003809 501 AAANPAG-------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRV 572 (794)
Q Consensus 501 AaaNP~~-------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~ 572 (794)
+||+..+ .||.-...+ ..|+.++|.+.+.... .+.-.+++++...|..
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l--------~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~---------------- 209 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRL--------EFYSEEELAKIVKRSARILNIEIDEDAAEEIAR---------------- 209 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE------------THHHHHHHHHHCCHCTT-EE-HHHHHHHHH----------------
T ss_pred eeeccccccchhHHhhcceecch--------hcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH----------------
Confidence 9988553 333222222 3588999999987654 5788999999988864
Q ss_pred ccccCHHHHHHHHHHHHHHH
Q 003809 573 AYRMTVRQLEALIRLSEAIA 592 (794)
Q Consensus 573 ~~~iT~R~LesliRlseA~A 592 (794)
..+-|+|-..+++|-....|
T Consensus 210 rsrGtPRiAnrll~rvrD~a 229 (233)
T PF05496_consen 210 RSRGTPRIANRLLRRVRDFA 229 (233)
T ss_dssp CTTTSHHHHHHHHHHHCCCC
T ss_pred hcCCChHHHHHHHHHHHHHH
Confidence 23578999998888765444
No 29
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.59 E-value=8.2e-14 Score=150.86 Aligned_cols=199 Identities=16% Similarity=0.130 Sum_probs=134.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee--cCCccCccccccccccC--CCCcccccccCceeec--CCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT--SGKSSSAAGLTASVAKE--PETGEFCIEAGALMLA--DNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~--~g~~ss~~gLt~~v~~d--~~~g~~~~~~Gal~la--d~GIl~IDE~dk 464 (794)
||||.|+||||||++++.+++.+....+. .....+..+|++..... ...+.+....|.+..| +++++++||||.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~ 145 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDA 145 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhc
Confidence 89999999999999999999998876653 22233444555542211 1122355678888776 577899999999
Q ss_pred CChhhHHHHHHHhh-ccEEEEeecceEEeecCceEEEEecCCCC-----CCCCCCCCcc----Cccc-ccC-ccccHHHH
Q 003809 465 MDIRDQVAIHEAME-QQTISITKAGIQATLNARTSILAAANPAG-----GRYDKSKPLK----KHED-ALA-PAFTTAQL 532 (794)
Q Consensus 465 ~~~~~~~~L~eame-~~~isi~kaG~~~~l~ar~siiAaaNP~~-----Gryd~~~~l~----~~~~-~~~-~~~~~~~l 532 (794)
.+++.+..|+.++| .+.+++...+....-+..|.++||+||.+ |.|.....+. .|-. .+. ...+.+.-
T Consensus 146 a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E 225 (327)
T TIGR01650 146 GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNE 225 (327)
T ss_pred cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHH
Confidence 99999999999999 56888876565555556899999999986 5676666665 1111 111 12233333
Q ss_pred HHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHH
Q 003809 533 KRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAI 591 (794)
Q Consensus 533 r~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~ 591 (794)
...+.- +..+.+..+++..+.+++.....|+.... +.-...+|+|.+.+|++++...
T Consensus 226 ~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~--~~i~~~~SpR~li~w~~~~~~f 283 (327)
T TIGR01650 226 AAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFIN--GDISTVMSPRTVITWAENAEIF 283 (327)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhcc--CCccccccHHHHHHHHHHHHhh
Confidence 333321 11222223467788888888888874321 2346789999999999887754
No 30
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.59 E-value=2.7e-15 Score=140.55 Aligned_cols=112 Identities=25% Similarity=0.306 Sum_probs=83.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec-C-CccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS-G-KSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR 468 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~-g-~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~ 468 (794)
|+||.|.||+|||++++++++.+...+... . ..-..+++++..+-+..++.|.+.+|.+.. +|+++||+++.+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~---~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFT---NILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-S---SEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhh---ceeeecccccCCHH
Confidence 899999999999999999999987654421 1 123456677777777777889999999984 79999999999999
Q ss_pred hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 469 DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 469 ~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.|++|+++|+++.+++. |....+|..+.||||.||..
T Consensus 78 tQsAlLeam~Er~Vt~~--g~~~~lp~pf~ViATqNp~e 114 (131)
T PF07726_consen 78 TQSALLEAMEERQVTID--GQTYPLPDPFFVIATQNPVE 114 (131)
T ss_dssp HHHHHHHHHHHSEEEET--TEEEE--SS-EEEEEE-TT-
T ss_pred HHHHHHHHHHcCeEEeC--CEEEECCCcEEEEEecCccc
Confidence 99999999999999997 89999999999999999975
No 31
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.56 E-value=6e-14 Score=164.91 Aligned_cols=161 Identities=22% Similarity=0.298 Sum_probs=120.1
Q ss_pred cccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeec-----c---eEEeecCceEEEEecCCCC-CCCCCCC
Q 003809 444 IEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKA-----G---IQATLNARTSILAAANPAG-GRYDKSK 514 (794)
Q Consensus 444 ~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~ka-----G---~~~~l~ar~siiAaaNP~~-Gryd~~~ 514 (794)
+++|++..|++|++||||++.|++..|..|+++|+++.+.+... + .....|+++.+|+++||.. -.+++..
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL 296 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPAL 296 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHH
Confidence 38999999999999999999999999999999999999987421 0 0345678999999999963 1111110
Q ss_pred --CccC--ccccc--CccccHHHHHHHHHHHhc------cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHH
Q 003809 515 --PLKK--HEDAL--APAFTTAQLKRYIAYAKT------LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLE 582 (794)
Q Consensus 515 --~l~~--~~~~~--~~~~~~~~lr~yi~~ar~------~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~Le 582 (794)
.++. -...+ ...-+.+.++.|+.+..+ ..|.++.+|...|+++|.+.-.. +....+..|+|.
T Consensus 297 ~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~------r~~lsl~~~~l~ 370 (637)
T PRK13765 297 RSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGR------KGHLTLKLRDLG 370 (637)
T ss_pred HHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCC------ccccccCHHHHH
Confidence 0000 00001 112456777888876542 35789999999999999876322 234556789999
Q ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 583 ALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 583 sliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
.|+|.|...|+...++.|+.+||.+|+.
T Consensus 371 ~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 371 GLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 9999999999999999999999999974
No 32
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.56 E-value=8.7e-14 Score=144.74 Aligned_cols=211 Identities=19% Similarity=0.260 Sum_probs=154.8
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCCccCcccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSSAAGLTASVAK 435 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss~~gLt~~v~~ 435 (794)
+.+||+.+|.-+-+.+-+.......-. |+||+||||.|||+||..+++.+...+.. +|-.-..+|-.+++..
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~r~e~lD-------HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKKRGEALD-------HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILT 99 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHhcCCCcC-------eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHh
Confidence 578999999999888876543322222 99999999999999999999998766543 3332222222222111
Q ss_pred CCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEee-cc---eEEeec-CceEEEEecCCC----
Q 003809 436 EPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITK-AG---IQATLN-ARTSILAAANPA---- 506 (794)
Q Consensus 436 d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~k-aG---~~~~l~-ar~siiAaaNP~---- 506 (794)
.+..+-|+|||||+++++..-..|+.|||+..+.|.- .| ....++ +.|++|+||...
T Consensus 100 --------------~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt 165 (332)
T COG2255 100 --------------NLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLT 165 (332)
T ss_pred --------------cCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccccccc
Confidence 1334679999999999999999999999999887641 11 223332 268899887544
Q ss_pred ---CCCCCCCCCccCcccccCccccHHHHHHHHH-HHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHH
Q 003809 507 ---GGRYDKSKPLKKHEDALAPAFTTAQLKRYIA-YAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLE 582 (794)
Q Consensus 507 ---~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~-~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~Le 582 (794)
..||.-...+. .|+.++|...+. .|+.+.-.+++++...|.. ..+-|+|-..
T Consensus 166 ~PLrdRFGi~~rle--------fY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~----------------rSRGTPRIAn 221 (332)
T COG2255 166 NPLRDRFGIIQRLE--------FYTVEELEEIVKRSAKILGIEIDEEAALEIAR----------------RSRGTPRIAN 221 (332)
T ss_pred chhHHhcCCeeeee--------cCCHHHHHHHHHHHHHHhCCCCChHHHHHHHH----------------hccCCcHHHH
Confidence 34554444333 578888888775 4456889999999888864 2356899999
Q ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 583 ALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 583 sliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
+|+|-..-.|..+....|+..-+.+|+..+
T Consensus 222 RLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 222 RLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 999999999999999999999999999885
No 33
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=4.6e-14 Score=158.46 Aligned_cols=182 Identities=21% Similarity=0.264 Sum_probs=126.0
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhhCCccee---ecCCccCcc-----ccccccccCCCCccccc-ccCceeecCCCeEEe
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGIVPRSVY---TSGKSSSAA-----GLTASVAKEPETGEFCI-EAGALMLADNGICCI 459 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~---~~g~~ss~~-----gLt~~v~~d~~~g~~~~-~~Gal~lad~GIl~I 459 (794)
|+.|||.|++||||..+|++|++.+||..- ......-+. .|+++ .+-.+||.-.- ++|.+-+|++|.+|+
T Consensus 268 dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGy-e~GAFTGA~~~GK~GlfE~A~gGTLFL 346 (560)
T COG3829 268 DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGY-EKGAFTGASKGGKPGLFELANGGTLFL 346 (560)
T ss_pred CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCc-CCccccccccCCCCcceeeccCCeEEe
Confidence 458999999999999999999999998532 222222222 22222 12224454322 799999999999999
Q ss_pred cccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCcc--Cccccc----Cccc
Q 003809 460 DEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLK--KHEDAL----APAF 527 (794)
Q Consensus 460 DE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~--~~~~~~----~~~~ 527 (794)
|||..|+...|..|+.+++.+.+.-. |.....+.++.||||||... |+|..+.--+ .-.-.+ +.+-
T Consensus 347 DEIgempl~LQaKLLRVLQEkei~rv--G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~e 424 (560)
T COG3829 347 DEIGEMPLPLQAKLLRVLQEKEIERV--GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKE 424 (560)
T ss_pred hhhccCCHHHHHHHHHHHhhceEEec--CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcc
Confidence 99999999999999999999998755 88888899999999999874 7775543222 000000 1112
Q ss_pred cHHHHHHHH-H-HHhc---cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHH
Q 003809 528 TTAQLKRYI-A-YAKT---LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLS 588 (794)
Q Consensus 528 ~~~~lr~yi-~-~ar~---~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRls 588 (794)
+...|-.|+ . |.+. ..+.|++++...|.. -.||-++|+|+++|.-+
T Consensus 425 DI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~---------------y~WPGNVRELeNviER~ 475 (560)
T COG3829 425 DIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR---------------YDWPGNVRELENVIERA 475 (560)
T ss_pred hHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh---------------CCCCchHHHHHHHHHHH
Confidence 333333333 2 2332 345689998888765 36999999999998644
No 34
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.52 E-value=6.3e-14 Score=155.36 Aligned_cols=206 Identities=20% Similarity=0.244 Sum_probs=146.7
Q ss_pred ceechhhHHHHHHHH--HhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee---ecCCccCcc----
Q 003809 357 TVFGHQDIKRAILLM--LLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY---TSGKSSSAA---- 427 (794)
Q Consensus 357 ~I~G~e~vK~alll~--L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~---~~g~~ss~~---- 427 (794)
.|+|+..+-+.++-. ++.. .|.+|||.|++||||..+|++|+..+||..- ......-+.
T Consensus 224 ~iIG~S~am~~ll~~i~~VA~------------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlE 291 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVAK------------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLE 291 (550)
T ss_pred cceecCHHHHHHHHHHHHHhc------------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHH
Confidence 677876655544322 3333 3448999999999999999999999998522 222222222
Q ss_pred -ccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 428 -GLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 428 -gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
.|++ ..|-.+||...-.+|.+-+||||.+|+|||..|+...|..|+.++++|.|.-. |...+++.++.||||||..
T Consensus 292 SELFG-HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRv--G~~r~ikVDVRiIAATNRD 368 (550)
T COG3604 292 SELFG-HEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERV--GGDRTIKVDVRVIAATNRD 368 (550)
T ss_pred HHHhc-ccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeec--CCCceeEEEEEEEeccchh
Confidence 2333 34555788888899999999999999999999999999999999999998765 8888899999999999987
Q ss_pred ------CCCCCCCCCcc--Ccc----cccCccccHHHHHHHHH-HHh-c--c-CCcCCHHHHHHHHHHHHHhccCCCCCC
Q 003809 507 ------GGRYDKSKPLK--KHE----DALAPAFTTAQLKRYIA-YAK-T--L-KPKLSLEARKLLVDSYVALRRGDTTPG 569 (794)
Q Consensus 507 ------~Gryd~~~~l~--~~~----~~~~~~~~~~~lr~yi~-~ar-~--~-~P~ls~ea~~~L~~~Y~~lR~~~~~~~ 569 (794)
.|+|..+.--+ ... ..-+..-+...|.+|+. .++ . . .-.++++|.+.|.+|
T Consensus 369 L~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y------------ 436 (550)
T COG3604 369 LEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY------------ 436 (550)
T ss_pred HHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC------------
Confidence 37765433221 000 00011224445555542 222 2 2 457899999998653
Q ss_pred CccccccCHHHHHHHHHHHHHHH
Q 003809 570 SRVAYRMTVRQLEALIRLSEAIA 592 (794)
Q Consensus 570 ~~~~~~iT~R~LesliRlseA~A 592 (794)
.||-++|.||.+++-|...|
T Consensus 437 ---~wPGNVRELen~veRavlla 456 (550)
T COG3604 437 ---EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred ---CCCCcHHHHHHHHHHHHHHh
Confidence 58999999999999887777
No 35
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.48 E-value=2.2e-13 Score=153.26 Aligned_cols=223 Identities=19% Similarity=0.277 Sum_probs=151.9
Q ss_pred hcCCceechhhHHHHHHHHH--hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCcc
Q 003809 353 SIGPTVFGHQDIKRAILLML--LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAA 427 (794)
Q Consensus 353 si~p~I~G~e~vK~alll~L--~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~ 427 (794)
.....++|+...-..+.-.+ +.. .+.+|||.|++||||-.+|+++++.++|. +......+-+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~------------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~ 205 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAP------------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE 205 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhC------------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH
Confidence 45667888765544433222 222 24589999999999999999999999883 22222222232
Q ss_pred ccccc----cccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEec
Q 003809 428 GLTAS----VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAA 503 (794)
Q Consensus 428 gLt~~----v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaa 503 (794)
.|..+ ..+-.+||...-..|.+..|+||++|||||..|+.+.|..|+.+++++.+.-. |...+.+.++.|||||
T Consensus 206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rv--G~~~~i~vdvRiIaaT 283 (464)
T COG2204 206 NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERV--GGNKPIKVDVRIIAAT 283 (464)
T ss_pred HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEec--CCCcccceeeEEEeec
Confidence 22221 22333577777889999999999999999999999999999999999998765 8888889999999999
Q ss_pred CCCC------CCCCCCCCcc------------CcccccCccccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCC
Q 003809 504 NPAG------GRYDKSKPLK------------KHEDALAPAFTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGD 565 (794)
Q Consensus 504 NP~~------Gryd~~~~l~------------~~~~~~~~~~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~ 565 (794)
|... |+|..+.-.+ .+.+.+ |.+-..+++++-..-..-.+.++++|...|..
T Consensus 284 ~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDI-p~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~--------- 353 (464)
T COG2204 284 NRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDI-PLLAEHFLKRFAAELGRPPKGFSPEALAALLA--------- 353 (464)
T ss_pred CcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhH-HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh---------
Confidence 9873 7775433211 111111 11222333433332223457899999988865
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHH
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVA 608 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eA 608 (794)
..||-++|+|+++++.+.. +...+.++.+|+---
T Consensus 354 ------y~WPGNVREL~N~ver~~i---l~~~~~i~~~~l~~~ 387 (464)
T COG2204 354 ------YDWPGNVRELENVVERAVI---LSEGPEIEVEDLPLE 387 (464)
T ss_pred ------CCCChHHHHHHHHHHHHHh---cCCccccchhhcccc
Confidence 3699999999999866544 444556777776543
No 36
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.9e-13 Score=147.51 Aligned_cols=220 Identities=22% Similarity=0.260 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHH
Q 003809 331 TEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 331 ~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~ 410 (794)
..|+++|-++-++|.-|.+ .||. +|. .|||+||||||||.|+|+++
T Consensus 313 K~ELeEiVefLkdP~kftr-----------------------LGGK---LPK--------GVLLvGPPGTGKTlLARAvA 358 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTR-----------------------LGGK---LPK--------GVLLVGPPGTGKTLLARAVA 358 (752)
T ss_pred HHHHHHHHHHhcCcHHhhh-----------------------ccCc---CCC--------ceEEeCCCCCchhHHHHHhh
Confidence 3577888888888888877 4554 344 48999999999999999999
Q ss_pred hhCCcceee-cCCcc--CccccccccccCCCCcccccccCceeecCCCeEEecccccCC----hhhH-------HHHHHH
Q 003809 411 GIVPRSVYT-SGKSS--SAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD----IRDQ-------VAIHEA 476 (794)
Q Consensus 411 ~~~p~~~~~-~g~~s--s~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~----~~~~-------~~L~ea 476 (794)
..+...+|. +|.-. ...|.-|.-+||-+...... ..+|+||||+|... +.++ +.|+--
T Consensus 359 GEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~--------APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvE 430 (752)
T KOG0734|consen 359 GEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKAR--------APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVE 430 (752)
T ss_pred cccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhc--------CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHH
Confidence 999888775 22211 12233333333322111111 24799999999432 2232 233333
Q ss_pred hhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccCccccHHHHHHHHHHHhccCCcCC
Q 003809 477 MEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKTLKPKLS 547 (794)
Q Consensus 477 me~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~~~P~ls 547 (794)
|+ |. .-|..+.||||+|-+ +||||....+. ..+-.=-.+.|.-|+... .++
T Consensus 431 mD---------GF--~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp----~PDv~GR~eIL~~yl~ki-----~~~ 490 (752)
T KOG0734|consen 431 MD---------GF--KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVP----LPDVRGRTEILKLYLSKI-----PLD 490 (752)
T ss_pred hc---------Cc--CcCCceEEEeccCChhhhhHHhcCCCccceeEecC----CCCcccHHHHHHHHHhcC-----Ccc
Confidence 32 22 235578999999965 59999887766 001111234455554321 122
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhcccccCCccccc
Q 003809 548 LEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVISVESSEIDLS 627 (794)
Q Consensus 548 ~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~~~~~~~i~~~ 627 (794)
++.--.+ .++.+.++|...|++|+..|.-.|..++.+.|+..|++.|-.- -+...+....-++
T Consensus 491 ~~VD~~i--------------iARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDr---IlMG~ERks~~i~ 553 (752)
T KOG0734|consen 491 EDVDPKI--------------IARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDR---ILMGPERKSMVID 553 (752)
T ss_pred cCCCHhH--------------hccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhh---eeecccccccccC
Confidence 1111111 2456778999999999999999999999999999999999643 2344555555555
Q ss_pred cc
Q 003809 628 EF 629 (794)
Q Consensus 628 ~~ 629 (794)
++
T Consensus 554 ~e 555 (752)
T KOG0734|consen 554 EE 555 (752)
T ss_pred hh
Confidence 43
No 37
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.35 E-value=1.2e-12 Score=125.62 Aligned_cols=115 Identities=23% Similarity=0.378 Sum_probs=84.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee--cCCccCccccccccccCCCCcccccccCceeec--CCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT--SGKSSSAAGLTASVAKEPETGEFCIEAGALMLA--DNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~--~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la--d~GIl~IDE~dk~~ 466 (794)
||||+||||||||+|++.+++.+...++. ....++...|.+...-. .+.....+|.++.+ ++++++||||++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 68999999999999999999998776543 33344555555544333 45666778888866 68999999999999
Q ss_pred hhhHHHHHHHhhccEEEEeecceEEeecC------ceEEEEecCCCC
Q 003809 467 IRDQVAIHEAMEQQTISITKAGIQATLNA------RTSILAAANPAG 507 (794)
Q Consensus 467 ~~~~~~L~eame~~~isi~kaG~~~~l~a------r~siiAaaNP~~ 507 (794)
++.+..|+.+++++.+.+...+.....+. .+.+|||+||..
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 99999999999999998765554444443 499999999986
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.34 E-value=1.6e-11 Score=135.21 Aligned_cols=212 Identities=18% Similarity=0.241 Sum_probs=138.6
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCCccCcccccccc
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSSAAGLTASV 433 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss~~gLt~~v 433 (794)
+.+++|++.+++.+...+........+ .-|+||+||||||||++++.+++.+...+.. .+......+.....
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~-------~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEA-------LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCC-------CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHH
Confidence 345789999998887666432110001 1189999999999999999999987654332 11110100000000
Q ss_pred ccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEe--ecc----eEEeecCceEEEEecCCCC
Q 003809 434 AKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISIT--KAG----IQATLNARTSILAAANPAG 507 (794)
Q Consensus 434 ~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~--kaG----~~~~l~ar~siiAaaNP~~ 507 (794)
.-.+..++++||||++.++...+..|+.+|++..+.+. ++. ....+| .+.+++|+|+..
T Consensus 97 --------------l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~ 161 (328)
T PRK00080 97 --------------LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAG 161 (328)
T ss_pred --------------HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcc
Confidence 00124678999999999999888899999998765432 111 111233 478888888753
Q ss_pred -------CCCCCCCCccCcccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHH
Q 003809 508 -------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVR 579 (794)
Q Consensus 508 -------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R 579 (794)
.||.....+ +.++.+.+..++... ......+++++...|... ..-++|
T Consensus 162 ~l~~~L~sRf~~~~~l--------~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~----------------~~G~pR 217 (328)
T PRK00080 162 LLTSPLRDRFGIVQRL--------EFYTVEELEKIVKRSARILGVEIDEEGALEIARR----------------SRGTPR 217 (328)
T ss_pred cCCHHHHHhcCeeeec--------CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH----------------cCCCch
Confidence 122111111 246777777777644 446778899988888752 123459
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 580 QLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 580 ~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
.+..+++.....|.......|+.+++.+++..+
T Consensus 218 ~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 218 IANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 899999888888887777789999999999765
No 39
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.30 E-value=3.7e-11 Score=139.40 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=127.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhh--------CCcc---eeecCCccCccc-----cccccccCCCCccc-ccccCceeecC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI--------VPRS---VYTSGKSSSAAG-----LTASVAKEPETGEF-CIEAGALMLAD 453 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~--------~p~~---~~~~g~~ss~~g-----Lt~~v~~d~~~g~~-~~~~Gal~lad 453 (794)
+|||.|+|||||+.+|++++.. +++. ++......-... |++. .+..++|.. .-.+|.+-.|+
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~-~~gaftga~~~~~~Gl~e~A~ 322 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY-EEGAFTGSRRGGRAGLFEIAH 322 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCC-ccccccCccccccCCchhccC
Confidence 8999999999999999999997 4442 222111111111 1111 111122221 13578899999
Q ss_pred CCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCcc-cccCcc
Q 003809 454 NGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHE-DALAPA 526 (794)
Q Consensus 454 ~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~-~~~~~~ 526 (794)
+|++||||++.|++..|..|+.+++++.+.-. |.....+.++.+|+|+|... |+|....-.+... ...-|+
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~--G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPP 400 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV--GGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPP 400 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeEEec--CCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCC
Confidence 99999999999999999999999999987654 66667788999999999763 5554321100000 000011
Q ss_pred c-----c-HHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCC
Q 003809 527 F-----T-TAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQ 599 (794)
Q Consensus 527 ~-----~-~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~ 599 (794)
+ + ..+.+.|+.. ++.....+++++...+.+....|.. -.||-++|+|+++++-+-..+.-.....
T Consensus 401 LReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~--------y~WPGNvREL~nvier~~i~~~~~~~~~ 472 (538)
T PRK15424 401 LRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLH--------YDWPGNVRELRNLMERLALFLSVEPTPD 472 (538)
T ss_pred hhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHh--------CCCCchHHHHHHHHHHHHHhcCCCCcCc
Confidence 1 1 1223444433 3345555888888777666555543 3589999999999986655332221234
Q ss_pred cCHHHH
Q 003809 600 VHPRHV 605 (794)
Q Consensus 600 V~~~dv 605 (794)
++.+++
T Consensus 473 i~~~~l 478 (538)
T PRK15424 473 LTPQFL 478 (538)
T ss_pred cCHHHh
Confidence 555544
No 40
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.29 E-value=1.6e-11 Score=135.14 Aligned_cols=195 Identities=18% Similarity=0.179 Sum_probs=124.3
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccccccc-c---ccCCCCcccccccCceeecCCCeEEeccc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGLTAS-V---AKEPETGEFCIEAGALMLADNGICCIDEF 462 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gLt~~-v---~~d~~~g~~~~~~Gal~lad~GIl~IDE~ 462 (794)
.+|||.|+|||||+.+|++++..+++. +...........+... + .+...+|.....+|.+..|++|++||||+
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei 102 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDEL 102 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCCh
Confidence 389999999999999999999988752 2221111111111111 1 11122343345688899999999999999
Q ss_pred ccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCcc-cccCccc-----c-H
Q 003809 463 DKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHE-DALAPAF-----T-T 529 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~-~~~~~~~-----~-~ 529 (794)
+.|+...|..|+.+++++.+... |.....+.++.+|+|+|... |+|....-.+... ...-|++ + .
T Consensus 103 ~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~ 180 (329)
T TIGR02974 103 ATASLLVQEKLLRVIEYGEFERV--GGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIM 180 (329)
T ss_pred HhCCHHHHHHHHHHHHcCcEEec--CCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHH
Confidence 99999999999999999987643 66667788899999999763 5553321100000 0001111 1 1
Q ss_pred HHHHHHHH-HHhc--cC--CcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 530 AQLKRYIA-YAKT--LK--PKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 530 ~~lr~yi~-~ar~--~~--P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
.+++.|+. +++. .. +.++++|.+.|.. ..||-++|+|.++++-+-..+. .+.++.+|
T Consensus 181 ~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~---------------y~WPGNvrEL~n~i~~~~~~~~---~~~~~~~~ 242 (329)
T TIGR02974 181 LLAEHFAIRMARELGLPLFPGFTPQAREQLLE---------------YHWPGNVRELKNVVERSVYRHG---LEEAPIDE 242 (329)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh---------------CCCCchHHHHHHHHHHHHHhCC---CCccchhh
Confidence 22344443 2332 22 5799999988865 3689999999999976554432 23455554
No 41
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.29 E-value=9e-11 Score=127.69 Aligned_cols=210 Identities=17% Similarity=0.219 Sum_probs=132.8
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecC-CccCccccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSG-KSSSAAGLTASVA 434 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g-~~ss~~gLt~~v~ 434 (794)
.+++|++.++..|...+.+...... ..-|++|+||||||||+|++.+++.+........ ......+.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~-------~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~- 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQE-------ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAI- 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCC-------CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHH-
Confidence 4689999999987776653211000 1128999999999999999999998765433211 100000000000
Q ss_pred cCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEe-ecce-----EEeecCceEEEEecCCCC-
Q 003809 435 KEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISIT-KAGI-----QATLNARTSILAAANPAG- 507 (794)
Q Consensus 435 ~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~-kaG~-----~~~l~ar~siiAaaNP~~- 507 (794)
+. .+..++++||||++.+++..+..|+.+|++....+. .++. ...++ .+.+++++|...
T Consensus 76 ---------l~----~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~~~~~ 141 (305)
T TIGR00635 76 ---------LT----NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATTRAGM 141 (305)
T ss_pred ---------HH----hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCC-CeEEEEecCCccc
Confidence 00 123467999999999999999999999987765432 1121 12233 367777777542
Q ss_pred ------CCCCCCCCccCcccccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHH
Q 003809 508 ------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQ 580 (794)
Q Consensus 508 ------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~ 580 (794)
.||..... -..++.+.++.++.... .....+++++.+.|.+.. .-.+|.
T Consensus 142 l~~~l~sR~~~~~~--------l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~----------------~G~pR~ 197 (305)
T TIGR00635 142 LTSPLRDRFGIILR--------LEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRS----------------RGTPRI 197 (305)
T ss_pred cCHHHHhhcceEEE--------eCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh----------------CCCcch
Confidence 12211111 12466777777776443 456788999888876521 123488
Q ss_pred HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 581 LEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 581 LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
+..+++.+...|.......|+.+++.+++..
T Consensus 198 ~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 198 ANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 8888887777887777778999999999876
No 42
>PHA02244 ATPase-like protein
Probab=99.28 E-value=4e-11 Score=131.48 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=82.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceee--cCCCeEEecccccCChh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALML--ADNGICCIDEFDKMDIR 468 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~l--ad~GIl~IDE~dk~~~~ 468 (794)
+|||.||||||||+|+++++..+...++..........+.+.+ . ..+. +..|.+.. +.+|+|+|||++.++++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i-~--~~g~--~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI-D--ANGK--FHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc-c--cccc--ccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 8999999999999999999999877766533211122222211 1 1233 35555544 47999999999999999
Q ss_pred hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 469 DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 469 ~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.+..|+.+++++.+.+. |.....+.+|++|||+||.+
T Consensus 196 vq~~L~~lLd~r~l~l~--g~~i~~h~~FRlIATsN~~~ 232 (383)
T PHA02244 196 ALIIINSAIANKFFDFA--DERVTAHEDFRVISAGNTLG 232 (383)
T ss_pred HHHHHHHHhccCeEEec--CcEEecCCCEEEEEeeCCCc
Confidence 99999999999977665 66666777999999999976
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.27 E-value=2.4e-11 Score=131.24 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=121.1
Q ss_pred HHHhhhhcCCceechhhHHHHHHHH--H--hCCcccccCCCcc-cccceeEEEeCCCcchHHHHHHHHHhhCCcceee-c
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLM--L--LGGVHKLTHEGIN-LRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-S 420 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~--L--~gg~~~~~~~g~~-~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~ 420 (794)
...+..++.++++|++.+|+.|.-. + +....+ .-|.. .+...|+||+||||||||++|+++++.+...-+. .
T Consensus 14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~--~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRK--NLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 4557778889999999999866211 1 111111 11221 1234599999999999999999998875321110 0
Q ss_pred CC--ccCccccccccccCCCCcccccccCceeecCCCeEEecccccC---------ChhhHHHHHHHhhccEEEEeecce
Q 003809 421 GK--SSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKM---------DIRDQVAIHEAMEQQTISITKAGI 489 (794)
Q Consensus 421 g~--~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~---------~~~~~~~L~eame~~~isi~kaG~ 489 (794)
+. ..+...|.+..... +.. ...+.+..|.+||+||||++.+ +.+.+..|+..|+++.
T Consensus 92 ~~~~~v~~~~l~~~~~g~--~~~--~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-------- 159 (287)
T CHL00181 92 GHLLTVTRDDLVGQYIGH--TAP--KTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-------- 159 (287)
T ss_pred CceEEecHHHHHHHHhcc--chH--HHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC--------
Confidence 00 00111122111110 000 1123445577899999999976 4567788999998643
Q ss_pred EEeecCceEEEEecCCCC------------CCCCCCCCccCcccccCccccHHHHHHHH-HHHhccCCcCCHHHHHHHHH
Q 003809 490 QATLNARTSILAAANPAG------------GRYDKSKPLKKHEDALAPAFTTAQLKRYI-AYAKTLKPKLSLEARKLLVD 556 (794)
Q Consensus 490 ~~~l~ar~siiAaaNP~~------------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi-~~ar~~~P~ls~ea~~~L~~ 556 (794)
.++.||+|+++.. +||+....+ ++++.+++...+ .++......+++++...+.+
T Consensus 160 -----~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F--------~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~ 226 (287)
T CHL00181 160 -----DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDF--------PDYTPEELLQIAKIMLEEQQYQLTPEAEKALLD 226 (287)
T ss_pred -----CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEc--------CCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 2466666665421 233222222 356666655544 44556677899999888888
Q ss_pred HHHHhccCCCCCCCccccccCHHHHHHHHHHH
Q 003809 557 SYVALRRGDTTPGSRVAYRMTVRQLEALIRLS 588 (794)
Q Consensus 557 ~Y~~lR~~~~~~~~~~~~~iT~R~LesliRls 588 (794)
++...+.. .+.-+.|.+.+++.-+
T Consensus 227 ~i~~~~~~--------~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 227 YIKKRMEQ--------PLFANARSVRNALDRA 250 (287)
T ss_pred HHHHhCCC--------CCCccHHHHHHHHHHH
Confidence 77664432 2334578888887644
No 44
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.9e-11 Score=128.76 Aligned_cols=181 Identities=22% Similarity=0.262 Sum_probs=115.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeec---CCCeEEecccccC--
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDKM-- 465 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~-- 465 (794)
.|||+||||||||.|||++|+.....+... .++.|.-..+. .|. .+--..+.+| ...|+||||||.+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrv----vgSElVqKYiG---EGa-RlVRelF~lArekaPsIIFiDEIDAIg~ 258 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRV----VGSELVQKYIG---EGA-RLVRELFELAREKAPSIIFIDEIDAIGA 258 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEe----ccHHHHHHHhc---cch-HHHHHHHHHHhhcCCeEEEEechhhhhc
Confidence 499999999999999999999876554421 11112111110 011 0111123333 2479999999943
Q ss_pred ---------ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccCccc
Q 003809 466 ---------DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALAPAF 527 (794)
Q Consensus 466 ---------~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~~ 527 (794)
+.+.|-.|++.+.|-. |... ..++-||+|||.. +||||+...+. +
T Consensus 259 kR~d~~t~gDrEVQRTmleLL~qlD------GFD~--~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp---------l 321 (406)
T COG1222 259 KRFDSGTSGDREVQRTMLELLNQLD------GFDP--RGNVKVIMATNRPDILDPALLRPGRFDRKIEFP---------L 321 (406)
T ss_pred ccccCCCCchHHHHHHHHHHHHhcc------CCCC--CCCeEEEEecCCccccChhhcCCCcccceeecC---------C
Confidence 3346777888875433 3322 2368999999976 58998877665 4
Q ss_pred cHHHHHHHHHHHhc----cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHH
Q 003809 528 TTAQLKRYIAYAKT----LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPR 603 (794)
Q Consensus 528 ~~~~lr~yi~~ar~----~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~ 603 (794)
+...=|+-|.-+.. +.+.+.=+ .| .+..-..|..++.++.--|--.|--..+..||.+
T Consensus 322 Pd~~gR~~Il~IHtrkM~l~~dvd~e---~l---------------a~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~ 383 (406)
T COG1222 322 PDEEGRAEILKIHTRKMNLADDVDLE---LL---------------ARLTEGFSGADLKAICTEAGMFAIRERRDEVTME 383 (406)
T ss_pred CCHHHHHHHHHHHhhhccCccCcCHH---HH---------------HHhcCCCchHHHHHHHHHHhHHHHHhccCeecHH
Confidence 44444444433322 33333322 11 1223457889999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 003809 604 HVRVAVRLLKT 614 (794)
Q Consensus 604 dv~eAi~L~~~ 614 (794)
|..+|++-+..
T Consensus 384 DF~~Av~KV~~ 394 (406)
T COG1222 384 DFLKAVEKVVK 394 (406)
T ss_pred HHHHHHHHHHh
Confidence 99999976543
No 45
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.23 E-value=8.2e-11 Score=136.56 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=130.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccccccc-cc---cCCCCccc-ccccCceeecCCCeEEeccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGLTAS-VA---KEPETGEF-CIEAGALMLADNGICCIDEF 462 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gLt~~-v~---~d~~~g~~-~~~~Gal~lad~GIl~IDE~ 462 (794)
+|||.|++||||+.+|++++..+++. ++..........+..+ +. +..++|.. .-.+|.+-.|++|++||||+
T Consensus 237 pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI 316 (526)
T TIGR02329 237 TVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEI 316 (526)
T ss_pred cEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecCh
Confidence 89999999999999999999887653 2222111111111111 11 11122221 13578888999999999999
Q ss_pred ccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCC--ccCcccccCccc-----c-
Q 003809 463 DKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKP--LKKHEDALAPAF-----T- 528 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~--l~~~~~~~~~~~-----~- 528 (794)
+.|+...|..|+.+++++.+... |.....+.++.+|+|+|... |+|....- +. .-...-|++ +
T Consensus 317 ~~Lp~~~Q~~Ll~~L~~~~~~r~--g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI 393 (526)
T TIGR02329 317 GEMPLPLQTRLLRVLEEREVVRV--GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDI 393 (526)
T ss_pred HhCCHHHHHHHHHHHhcCcEEec--CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHH
Confidence 99999999999999999987643 55566778899999998763 45543111 00 000001111 1
Q ss_pred HHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Q 003809 529 TAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRV 607 (794)
Q Consensus 529 ~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~e 607 (794)
..+.+.|+.. ++.....++++|...+...+-.|.. ..||-++|+|+++++-+-..+.......|+.+|+..
T Consensus 394 ~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~--------y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 394 LPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQR--------YPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHh--------CCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 1223444432 2233445899998886655555533 368999999999998776654432345688887654
No 46
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.23 E-value=6.1e-11 Score=121.95 Aligned_cols=207 Identities=21% Similarity=0.260 Sum_probs=120.1
Q ss_pred hhhcCCceechhhHHHHHHHHH--------hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC
Q 003809 351 VDSIGPTVFGHQDIKRAILLML--------LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK 422 (794)
Q Consensus 351 ~~si~p~I~G~e~vK~alll~L--------~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~ 422 (794)
.+-.+.+|.||+.+|+..-+.+ ||-... -|||++||||||||+++++++..+..+++..
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAP-----------knVLFyGppGTGKTm~Akalane~kvp~l~v-- 182 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAP-----------KNVLFYGPPGTGKTMMAKALANEAKVPLLLV-- 182 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCc-----------ceeEEECCCCccHHHHHHHHhcccCCceEEe--
Confidence 3445668999999988654433 333321 2899999999999999999999987766642
Q ss_pred ccCccccccccccCCCCccccccc--CceeecCCCeEEecccccCChh------------hHHHHHHHhhccEEEEeecc
Q 003809 423 SSSAAGLTASVAKEPETGEFCIEA--GALMLADNGICCIDEFDKMDIR------------DQVAIHEAMEQQTISITKAG 488 (794)
Q Consensus 423 ~ss~~gLt~~v~~d~~~g~~~~~~--Gal~lad~GIl~IDE~dk~~~~------------~~~~L~eame~~~isi~kaG 488 (794)
.+..|.+..+.| |...+.. ---..+..+|+||||+|.+..+ ..++|+.-|+ |
T Consensus 183 --kat~liGehVGd---gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD---------g 248 (368)
T COG1223 183 --KATELIGEHVGD---GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD---------G 248 (368)
T ss_pred --chHHHHHHHhhh---HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc---------C
Confidence 223343333332 1111110 0001224579999999965433 2356666663 2
Q ss_pred eEEeecCceEEEEecCCCC-------CCCCCCCCccCcccccCccccHHH--HHHHHHHHhccCCcCCHHHHHHHHHHHH
Q 003809 489 IQATLNARTSILAAANPAG-------GRYDKSKPLKKHEDALAPAFTTAQ--LKRYIAYAKTLKPKLSLEARKLLVDSYV 559 (794)
Q Consensus 489 ~~~~l~ar~siiAaaNP~~-------Gryd~~~~l~~~~~~~~~~~~~~~--lr~yi~~ar~~~P~ls~ea~~~L~~~Y~ 559 (794)
+. -+-.+..|||||... .|| ++.++..++.+. +.-.-.|++.+--.+... .+++
T Consensus 249 i~--eneGVvtIaaTN~p~~LD~aiRsRF---------EeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~----- 311 (368)
T COG1223 249 IK--ENEGVVTIAATNRPELLDPAIRSRF---------EEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYL----- 311 (368)
T ss_pred cc--cCCceEEEeecCChhhcCHHHHhhh---------hheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHH-----
Confidence 22 233466778888553 233 222222222211 111112333321111111 1111
Q ss_pred HhccCCCCCCCccccccCHHHH-HHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 560 ALRRGDTTPGSRVAYRMTVRQL-EALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 560 ~lR~~~~~~~~~~~~~iT~R~L-esliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
...+-++|.|.+ |.+++-|--.|-++.++.|+.+|++.|+.-
T Consensus 312 ----------~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 312 ----------AAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred ----------HHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 122345777887 899999999999999999999999999874
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.21 E-value=6.1e-11 Score=127.99 Aligned_cols=218 Identities=18% Similarity=0.185 Sum_probs=120.1
Q ss_pred cCCceechhhHHHHHHH--HHhCCcccccCCCccc-ccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCC--ccCcc
Q 003809 354 IGPTVFGHQDIKRAILL--MLLGGVHKLTHEGINL-RGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGK--SSSAA 427 (794)
Q Consensus 354 i~p~I~G~e~vK~alll--~L~gg~~~~~~~g~~~-Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~--~ss~~ 427 (794)
+.-++.|.+.+|+.|.- .+.--......-|... ....|+||+||||||||++|++++..+...-+. .+. ..+..
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 33456999999988622 1111100111122221 123489999999999999998887765321110 000 00111
Q ss_pred ccccccccCCCCcccccccCceeecCCCeEEecccccC---------ChhhHHHHHHHhhccEEEEeecceEEeecCceE
Q 003809 428 GLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKM---------DIRDQVAIHEAMEQQTISITKAGIQATLNARTS 498 (794)
Q Consensus 428 gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~---------~~~~~~~L~eame~~~isi~kaG~~~~l~ar~s 498 (794)
.+....... +.. ...+.+-.|.+|++||||++.+ +...+..|++.|+++. .++.
T Consensus 100 ~l~~~~~g~--~~~--~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~ 162 (284)
T TIGR02880 100 DLVGQYIGH--TAP--KTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-------------DDLV 162 (284)
T ss_pred HHhHhhccc--chH--HHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-------------CCEE
Confidence 222111111 000 1123455567899999999977 3456788999998653 3577
Q ss_pred EEEecCCCC-CCC-CCCCCccCc--ccccCccccHHHHHHHH-HHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccc
Q 003809 499 ILAAANPAG-GRY-DKSKPLKKH--EDALAPAFTTAQLKRYI-AYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVA 573 (794)
Q Consensus 499 iiAaaNP~~-Gry-d~~~~l~~~--~~~~~~~~~~~~lr~yi-~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~ 573 (794)
+|+|+++.. ..| ..+..+..+ ....-|.++.+++...+ .++++..+.+++++.+.+..+....+. ..
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~--------~~ 234 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRT--------QP 234 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCC--------CC
Confidence 778776531 111 001011100 00112345556555544 344556788999999988876554432 24
Q ss_pred cccCHHHHHHHHHHHHHHHHhcC
Q 003809 574 YRMTVRQLEALIRLSEAIARSHL 596 (794)
Q Consensus 574 ~~iT~R~LesliRlseA~Arl~~ 596 (794)
|+-+.|.+.+++.-+......++
T Consensus 235 ~~GN~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 235 HFANARSIRNAIDRARLRQANRL 257 (284)
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 67789999999987755544433
No 48
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.21 E-value=2e-11 Score=121.65 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=80.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcc---eee--cCCccCc---cccccccccCCCCcccccccCceeecCCCeEEecc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRS---VYT--SGKSSSA---AGLTASVAKEPETGEFCIEAGALMLADNGICCIDE 461 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~--~g~~ss~---~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE 461 (794)
.+|||+|++||||+.+|++++..++|. +.. ++..+.. ..|++. .+...+|.....+|.+..|++|++||||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~-~~~~~~~~~~~~~G~l~~A~~GtL~Ld~ 101 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH-EKGAFTGARSDKKGLLEQANGGTLFLDE 101 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB-CSSSSTTTSSEBEHHHHHTTTSEEEEET
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc-ccccccccccccCCceeeccceEEeecc
Confidence 389999999999999999999998763 222 2211100 112222 1122234444567999999999999999
Q ss_pred cccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 462 FDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 462 ~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
++.|++..|..|+.+|+++.+... |.....+.++.||+|+|..
T Consensus 102 I~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 102 IEDLPPELQAKLLRVLEEGKFTRL--GSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp GGGS-HHHHHHHHHHHHHSEEECC--TSSSEEE--EEEEEEESS-
T ss_pred hhhhHHHHHHHHHHHHhhchhccc--cccccccccceEEeecCcC
Confidence 999999999999999999998655 5555667789999999965
No 49
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.20 E-value=2.8e-10 Score=134.92 Aligned_cols=255 Identities=15% Similarity=0.204 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHc---CCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHH
Q 003809 330 TTEEIDEIQRMRN---APDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFL 406 (794)
Q Consensus 330 t~~e~~~i~~~~~---~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll 406 (794)
|-.++.++.++.+ ...+-+.+...-++.|+|++...++++-++..+... |++|+||||||||+++
T Consensus 125 ~~~~~~~l~~~~~~~~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~------------~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 125 TLKKLERLEKLEKKKLHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQ------------HIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCC------------eEEEECCCCCCHHHHH
Confidence 4455555555422 122333444455668999999888877666544322 7999999999999999
Q ss_pred HHHHhhCCc----------c-eeecCCccC--c----ccccccccc--------C-CCCcccccccCceeecCCCeEEec
Q 003809 407 KYAAGIVPR----------S-VYTSGKSSS--A----AGLTASVAK--------E-PETGEFCIEAGALMLADNGICCID 460 (794)
Q Consensus 407 ~~i~~~~p~----------~-~~~~g~~ss--~----~gLt~~v~~--------d-~~~g~~~~~~Gal~lad~GIl~ID 460 (794)
+.++..+.+ . +...+.... . ..+.+.+.. + ..+|......|.+..+++|++|||
T Consensus 193 r~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LD 272 (615)
T TIGR02903 193 RLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFID 272 (615)
T ss_pred HHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEe
Confidence 999877531 1 111211100 0 011111000 0 011222345677778899999999
Q ss_pred ccccCChhhHHHHHHHhhccEEEEeecce---------------EEeecCceEEEEecCCCCCCCCCCCCccCc-ccccC
Q 003809 461 EFDKMDIRDQVAIHEAMEQQTISITKAGI---------------QATLNARTSILAAANPAGGRYDKSKPLKKH-EDALA 524 (794)
Q Consensus 461 E~dk~~~~~~~~L~eame~~~isi~kaG~---------------~~~l~ar~siiAaaNP~~Gryd~~~~l~~~-~~~~~ 524 (794)
|++.|++..|..|+.+|+++++.+..... ....++++.+++|++......+ .++..+ ....-
T Consensus 273 Ei~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~--~aLrSR~~~i~~ 350 (615)
T TIGR02903 273 EIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEIN--PALRSRCAEVFF 350 (615)
T ss_pred ccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccC--HHHHhceeEEEe
Confidence 99999999999999999999887653211 1123456777777665432222 122211 11122
Q ss_pred ccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHh----cCCCC
Q 003809 525 PAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARS----HLETQ 599 (794)
Q Consensus 525 ~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl----~~~~~ 599 (794)
++++.+++..++..+- .....+++++.+.|..+-..- +-....|+.+.+.+...+.+ .....
T Consensus 351 ~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~~g-------------Rraln~L~~~~~~~~~~~~~~~~~~~~~~ 417 (615)
T TIGR02903 351 EPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTIEG-------------RKAVNILADVYGYALYRAAEAGKENDKVT 417 (615)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCCcH-------------HHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 4467777777765543 345568999888887641111 11112333333332111111 12337
Q ss_pred cCHHHHHHHHHH
Q 003809 600 VHPRHVRVAVRL 611 (794)
Q Consensus 600 V~~~dv~eAi~L 611 (794)
|+.+||.+++..
T Consensus 418 I~~edv~~~l~~ 429 (615)
T TIGR02903 418 ITQDDVYEVIQI 429 (615)
T ss_pred ECHHHHHHHhCC
Confidence 999999998876
No 50
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.20 E-value=1.4e-10 Score=135.14 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=132.9
Q ss_pred CCceechhhHHHHHHHHHh--CCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc---ee--ecCCccCc-
Q 003809 355 GPTVFGHQDIKRAILLMLL--GGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VY--TSGKSSSA- 426 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~--gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~--~~g~~ss~- 426 (794)
...|+|+...-+.+.-.+- +.. +.+|||+|++||||+.++++++..+++. +. .+......
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~------------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS------------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC------------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 3468887765544433332 222 2389999999999999999999998753 22 12221110
Q ss_pred --cccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecC
Q 003809 427 --AGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAAN 504 (794)
Q Consensus 427 --~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaN 504 (794)
..|++. .+...+|...-.+|.+..|++|++||||++.|+...|..|+.+++++.+.-. |.....+.++.+|+|+|
T Consensus 254 ~e~~lfG~-~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 254 AESELFGH-VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRV--GSDRSLRVDVRVIAATN 330 (509)
T ss_pred HHHHhcCc-cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeC--CCCcceecceEEEEecC
Confidence 011211 1112233333457888899999999999999999999999999999987543 55556677899999999
Q ss_pred CCC------CCCCCCCCccCcc-cccCccc-----cH-HHHHHHHHH-Hhc---cCCcCCHHHHHHHHHHHHHhccCCCC
Q 003809 505 PAG------GRYDKSKPLKKHE-DALAPAF-----TT-AQLKRYIAY-AKT---LKPKLSLEARKLLVDSYVALRRGDTT 567 (794)
Q Consensus 505 P~~------Gryd~~~~l~~~~-~~~~~~~-----~~-~~lr~yi~~-ar~---~~P~ls~ea~~~L~~~Y~~lR~~~~~ 567 (794)
... |+|....-..... ...-|++ +. ...+.|+.. ++. -.+.++++|...|..
T Consensus 331 ~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~----------- 399 (509)
T PRK05022 331 RDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA----------- 399 (509)
T ss_pred CCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-----------
Confidence 763 4554322100000 0000111 11 223334432 332 246899999998865
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHh
Q 003809 568 PGSRVAYRMTVRQLEALIRLSEAIARS 594 (794)
Q Consensus 568 ~~~~~~~~iT~R~LesliRlseA~Arl 594 (794)
..||-++|+|+++++.+...|.-
T Consensus 400 ----y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 400 ----YDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred ----CCCCCcHHHHHHHHHHHHHhcCC
Confidence 36999999999999888776654
No 51
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.18 E-value=2.4e-11 Score=136.98 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=99.2
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCccccc---CC-CcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC-cc
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKLT---HE-GINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK-SS 424 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~~---~~-g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~-~s 424 (794)
+...+...|+||+.+|+++..++.....+.. .. .-.-...-|+||+||||||||++++++++.+...++.... ..
T Consensus 65 i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l 144 (412)
T PRK05342 65 IKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL 144 (412)
T ss_pred HHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 3444555699999999999887742111000 00 0011234589999999999999999999987665553211 11
Q ss_pred CccccccccccCCCCcccccccCceeecCCCeEEecccccCChh--------------hHHHHHHHhhccEEEEeecceE
Q 003809 425 SAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR--------------DQVAIHEAMEQQTISITKAGIQ 490 (794)
Q Consensus 425 s~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~--------------~~~~L~eame~~~isi~kaG~~ 490 (794)
+..|..+.-.......-+....|.+..+.+||+||||+|+++.. .|.+|+++||...+.+...|..
T Consensus 145 ~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~ 224 (412)
T PRK05342 145 TEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGR 224 (412)
T ss_pred ccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCc
Confidence 11221111000000000001223445578899999999999764 7899999999777777544443
Q ss_pred EeecCceEEEEecCCCC---CCCC
Q 003809 491 ATLNARTSILAAANPAG---GRYD 511 (794)
Q Consensus 491 ~~l~ar~siiAaaNP~~---Gryd 511 (794)
..-...+.+++|+|+.+ |-|.
T Consensus 225 ~~~~~~~~~i~t~nilfi~~Gaf~ 248 (412)
T PRK05342 225 KHPQQEFIQVDTTNILFICGGAFD 248 (412)
T ss_pred CcCCCCeEEeccCCceeeeccccc
Confidence 33346799999999953 5553
No 52
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=6.7e-11 Score=131.23 Aligned_cols=223 Identities=16% Similarity=0.150 Sum_probs=138.8
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc------eeec
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS------VYTS 420 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~------~~~~ 420 (794)
-..+.++.+..+.|...--+.++=++-. . .+. +.|||+.|++||||+.+|+.++..+.+. .+.+
T Consensus 69 ~~~~~~~~~~~LIG~~~~~~~~~eqik~-~---ap~------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NC 138 (403)
T COG1221 69 RPYLKSEALDDLIGESPSLQELREQIKA-Y---APS------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNC 138 (403)
T ss_pred hhhccchhhhhhhccCHHHHHHHHHHHh-h---CCC------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEH
Confidence 3445566667777765432222222211 1 111 2389999999999999999999886662 1223
Q ss_pred CCccCcc---ccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCce
Q 003809 421 GKSSSAA---GLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNART 497 (794)
Q Consensus 421 g~~ss~~---gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~ 497 (794)
+..+... .|++ ..+-..+|...-++|.+-.|+||++|+||+..|++..|..|+.+|+.|.+.-. |.....+.++
T Consensus 139 a~~~en~~~~eLFG-~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rv--G~~~~~~~dV 215 (403)
T COG1221 139 AAYSENLQEAELFG-HEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRV--GGSQPRPVDV 215 (403)
T ss_pred HHhCcCHHHHHHhc-cccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEec--CCCCCcCCCc
Confidence 3322211 1222 22333567667789999999999999999999999999999999999998855 6677888999
Q ss_pred EEEEecCCCCCC--------CCCCCCcc-CcccccCccccHHHHHH-HH-HHHhcc---CCcCCHHHHHHHHHHHHHhcc
Q 003809 498 SILAAANPAGGR--------YDKSKPLK-KHEDALAPAFTTAQLKR-YI-AYAKTL---KPKLSLEARKLLVDSYVALRR 563 (794)
Q Consensus 498 siiAaaNP~~Gr--------yd~~~~l~-~~~~~~~~~~~~~~lr~-yi-~~ar~~---~P~ls~ea~~~L~~~Y~~lR~ 563 (794)
.+++|+|-..++ |.+...+. .-...-+...+...|-. |+ .+++++ .+..+++|...|..
T Consensus 216 Rli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~------- 288 (403)
T COG1221 216 RLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA------- 288 (403)
T ss_pred eeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-------
Confidence 999999966421 10000000 00000000111111222 21 344442 34445566666654
Q ss_pred CCCCCCCccccccCHHHHHHHHHHHHHHHHhcCC
Q 003809 564 GDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLE 597 (794)
Q Consensus 564 ~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~ 597 (794)
..||-++|+|.+++..+-+.|.....
T Consensus 289 --------y~~pGNirELkN~Ve~~~~~~~~~~~ 314 (403)
T COG1221 289 --------YDWPGNIRELKNLVERAVAQASGEGQ 314 (403)
T ss_pred --------CCCCCcHHHHHHHHHHHHHHhccccC
Confidence 35788999999999999998876653
No 53
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.16 E-value=3.1e-10 Score=135.84 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=126.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eee--cCCccC---ccccccccccCCCCcccccccCceeecCCCeEEeccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYT--SGKSSS---AAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEF 462 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~--~g~~ss---~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~ 462 (794)
+|||.|+|||||+.+|++++..+++. +.. ++.... ...|++... ++...-.+|.+..|++|++||||+
T Consensus 350 pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~----~~~~~~~~g~~~~a~~GtL~ldei 425 (638)
T PRK11388 350 PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR----TDSENGRLSKFELAHGGTLFLEKV 425 (638)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC----cCccCCCCCceeECCCCEEEEcCh
Confidence 89999999999999999999987642 222 222111 011222211 111223578888999999999999
Q ss_pred ccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCccccc-Cccc-----c-H
Q 003809 463 DKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHEDAL-APAF-----T-T 529 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~~~~-~~~~-----~-~ 529 (794)
+.|+...|..|+.+++++.++-. |.....+.++.+|+|+|... |+|....-.......+ -|++ + .
T Consensus 426 ~~l~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~ 503 (638)
T PRK11388 426 EYLSPELQSALLQVLKTGVITRL--DSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIP 503 (638)
T ss_pred hhCCHHHHHHHHHHHhcCcEEeC--CCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHH
Confidence 99999999999999999987644 55556677899999999753 5554432111000000 0111 1 1
Q ss_pred HHHHHHHHHH-hc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHH
Q 003809 530 AQLKRYIAYA-KT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVR 606 (794)
Q Consensus 530 ~~lr~yi~~a-r~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~ 606 (794)
.+++.|+... +. ..+.+++++.+.|.. ..||-++|+|.++++.+-..+ -...|+.+|+.
T Consensus 504 ~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~---------------y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp 565 (638)
T PRK11388 504 ALVNNKLRSLEKRFSTRLKIDDDALARLVS---------------YRWPGNDFELRSVIENLALSS---DNGRIRLSDLP 565 (638)
T ss_pred HHHHHHHHHHHHHhCCCCCcCHHHHHHHHc---------------CCCCChHHHHHHHHHHHHHhC---CCCeecHHHCc
Confidence 2234444322 22 245799999988865 368999999999998765543 23467888876
Q ss_pred HHH
Q 003809 607 VAV 609 (794)
Q Consensus 607 eAi 609 (794)
..+
T Consensus 566 ~~~ 568 (638)
T PRK11388 566 EHL 568 (638)
T ss_pred hhh
Confidence 554
No 54
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.16 E-value=1.6e-10 Score=127.14 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=117.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccccc-cccc---cCCCCcccccccCceeecCCCeEEecccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGLT-ASVA---KEPETGEFCIEAGALMLADNGICCIDEFD 463 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gLt-~~v~---~d~~~g~~~~~~Gal~lad~GIl~IDE~d 463 (794)
+|||+|+|||||+.+|++++..+++. ++..........+. ..+. +...+|.....+|.+..|++|++||||++
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~ 110 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELA 110 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChh
Confidence 89999999999999999999988752 22211111111111 1111 11122333345788899999999999999
Q ss_pred cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCcc-cccCccc-----c-HH
Q 003809 464 KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHE-DALAPAF-----T-TA 530 (794)
Q Consensus 464 k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~-~~~~~~~-----~-~~ 530 (794)
.++...|..|+.+++.+.+... |.....+.++.+|+|+|... |.|....-..... ...-|++ + ..
T Consensus 111 ~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~ 188 (326)
T PRK11608 111 TAPMLVQEKLLRVIEYGELERV--GGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIML 188 (326)
T ss_pred hCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHH
Confidence 9999999999999999886543 55567778899999999763 5553211000000 0000111 1 12
Q ss_pred HHHHHHHH-Hhcc----CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHH
Q 003809 531 QLKRYIAY-AKTL----KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIA 592 (794)
Q Consensus 531 ~lr~yi~~-ar~~----~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~A 592 (794)
+++.|+.. ++.. .|.+++++...|.. ..||-++|+|+++++-+-..+
T Consensus 189 L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~---------------y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 189 MAEHFAIQMCRELGLPLFPGFTERARETLLN---------------YRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh---------------CCCCcHHHHHHHHHHHHHHhc
Confidence 23344432 3332 26799999988865 369999999999998765443
No 55
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.16 E-value=2e-10 Score=134.76 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=124.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccc-----cccccccCCCCcccccccCceeecCCCeEEeccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAG-----LTASVAKEPETGEFCIEAGALMLADNGICCIDEF 462 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~g-----Lt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~ 462 (794)
+|||.|++||||+.++++++..+++. +........... |++. .+...+|.....+|.+..|++|++||||+
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~GtL~ldei 299 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGH-EKGAFTGAIAQRKGRFELADGGTLFLDEI 299 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCC-CCCccCCCCcCCCCcccccCCCeEEEech
Confidence 89999999999999999999987642 222111111111 1111 11112233334578888999999999999
Q ss_pred ccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCcc-cccCccc-----c-H
Q 003809 463 DKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHE-DALAPAF-----T-T 529 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~-~~~~~~~-----~-~ 529 (794)
+.|++..|..|+.+++++.+... |.....+.++.+|+|+|... |+|....-.+... ...-|++ + .
T Consensus 300 ~~L~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~ 377 (534)
T TIGR01817 300 GEISPAFQAKLLRVLQEGEFERV--GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIP 377 (534)
T ss_pred hhCCHHHHHHHHHHHhcCcEEEC--CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHH
Confidence 99999999999999999987643 44455667899999998763 4553311000000 0000111 1 1
Q ss_pred HHHHHHHHH-Hhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHH
Q 003809 530 AQLKRYIAY-AKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVR 606 (794)
Q Consensus 530 ~~lr~yi~~-ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~ 606 (794)
.+++.|+.. ++. ..+.+++++.+.|.. ..||-++|+|+++++.+-..+ ....|+.+|+.
T Consensus 378 ~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~---------------~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 378 LLAEAFLEKFNRENGRPLTITPSAIRVLMS---------------CKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHh---------------CCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 233444432 222 237899999988865 368999999999998765543 34578888864
No 56
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.12 E-value=1.2e-10 Score=130.92 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=99.4
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCccc-------ccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHK-------LTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~-------~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
...|.+.+...|+||+.+|+++..++...... ..+.+. -.+..|+||+||||||||++++++++.+...+..
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~-~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGV-ELSKSNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhcccccccccccc-ccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 45566677788999999999999887421100 000111 1234599999999999999999999887544332
Q ss_pred cC-CccCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh--------------hhHHHHHHHhhccEEE-
Q 003809 420 SG-KSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI--------------RDQVAIHEAMEQQTIS- 483 (794)
Q Consensus 420 ~g-~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~--------------~~~~~L~eame~~~is- 483 (794)
.. ...+..|+.+.-.....+......++.+..+.+||+||||+|++.+ ..|++|+++|| |+++
T Consensus 147 ~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~ 225 (413)
T TIGR00382 147 ADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVAN 225 (413)
T ss_pred echhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-cccee
Confidence 11 1111222211100000000111124556667889999999999987 58999999996 5544
Q ss_pred Eeec-ceEEeecCceEEEEecCCC---CCCCC
Q 003809 484 ITKA-GIQATLNARTSILAAANPA---GGRYD 511 (794)
Q Consensus 484 i~ka-G~~~~l~ar~siiAaaNP~---~Gryd 511 (794)
+... |....+ ..+.+|.|+|.. .|-|+
T Consensus 226 v~~~~gr~~~~-~~~i~i~TsNilfi~~Gaf~ 256 (413)
T TIGR00382 226 VPPQGGRKHPY-QEFIQIDTSNILFICGGAFV 256 (413)
T ss_pred cccCCCccccC-CCeEEEEcCCceeeeccccc
Confidence 3322 333333 578999999984 35553
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.10 E-value=3.6e-10 Score=120.58 Aligned_cols=213 Identities=16% Similarity=0.155 Sum_probs=114.1
Q ss_pred ceechhhHHHHHH--HHHhCCcccccCCCccc-ccceeEEEeCCCcchHHHHHHHHHhhCCcc-eeecCCc--cCccccc
Q 003809 357 TVFGHQDIKRAIL--LMLLGGVHKLTHEGINL-RGDINVCIVGDPSCAKSQFLKYAAGIVPRS-VYTSGKS--SSAAGLT 430 (794)
Q Consensus 357 ~I~G~e~vK~all--l~L~gg~~~~~~~g~~~-Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~-~~~~g~~--ss~~gLt 430 (794)
+++|++.+|+.|- ....--.......|... .+..|+||+||||||||++++++++.+... ....+.. .....+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 3789999998773 11110000001122221 223599999999999999999999864211 0000000 0111121
Q ss_pred cccccCCCCcccccccCceeecCCCeEEecccccCC--------hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEe
Q 003809 431 ASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD--------IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAA 502 (794)
Q Consensus 431 ~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~--------~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAa 502 (794)
+..... +. . .-.+.+..|.+||+||||++.+. .+.+..|+..|++.. .++.++++
T Consensus 87 ~~~~g~--~~-~-~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila 149 (261)
T TIGR02881 87 GEYIGH--TA-Q-KTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILA 149 (261)
T ss_pred hhhccc--hH-H-HHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------------CCEEEEec
Confidence 111100 00 0 01234445678999999999875 345677888887642 23455555
Q ss_pred cCCCCC-CCC-CCCCccCc--ccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccC
Q 003809 503 ANPAGG-RYD-KSKPLKKH--EDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMT 577 (794)
Q Consensus 503 aNP~~G-ryd-~~~~l~~~--~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT 577 (794)
.+|... .+. ....+..+ ....-+.++.+.+..++... ....-.+++++...|.+++..++.... ....+
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~------~~~gn 223 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSS------REFSN 223 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccC------CCCch
Confidence 544321 000 00111100 01112456666666665444 335557999999999888877764221 12345
Q ss_pred HHHHHHHHHHHHHHH
Q 003809 578 VRQLEALIRLSEAIA 592 (794)
Q Consensus 578 ~R~LesliRlseA~A 592 (794)
.|.+..++..|..+.
T Consensus 224 ~R~~~n~~e~a~~~~ 238 (261)
T TIGR02881 224 ARYVRNIIEKAIRRQ 238 (261)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888776555
No 58
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.10 E-value=6.3e-10 Score=129.82 Aligned_cols=194 Identities=17% Similarity=0.212 Sum_probs=119.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccc-----cccccccCCCCcccccccCceeecCCCeEEeccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAG-----LTASVAKEPETGEFCIEAGALMLADNGICCIDEF 462 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~g-----Lt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~ 462 (794)
+|||.|++||||+.+|++++..+++. +........... |++.. ....++...-.+|.+-.|++|++||||+
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~-~~~~~~~~~~~~g~~e~a~~GtL~LdeI 307 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHA-PGAYPNALEGKKGFFEQANGGSVLLDEI 307 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCC-CCCcCCcccCCCChhhhcCCCEEEEeCh
Confidence 79999999999999999999887653 121111111111 11111 0011122223567788899999999999
Q ss_pred ccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccC-cccccCccc-----cH-
Q 003809 463 DKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKK-HEDALAPAF-----TT- 529 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~-~~~~~~~~~-----~~- 529 (794)
+.|++..|..|+.+++++.+.-. |.....+.++.||+|++... |.|....-.+. .-...-|++ +.
T Consensus 308 ~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~ 385 (520)
T PRK10820 308 GEMSPRMQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIM 385 (520)
T ss_pred hhCCHHHHHHHHHHHhcCCcccC--CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHH
Confidence 99999999999999999876433 55555566788999887653 55543211100 000000111 11
Q ss_pred HHHHHHHH-HHhc---cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Q 003809 530 AQLKRYIA-YAKT---LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHV 605 (794)
Q Consensus 530 ~~lr~yi~-~ar~---~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv 605 (794)
...+.|+. ++++ -.|.+++++...|.. ..||-++|+|++++.-+-..+ ....++.+|+
T Consensus 386 ~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~---------------y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 386 PLTELFVARFADEQGVPRPKLAADLNTVLTR---------------YGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHHHHHHHHHcCCCCCCcCHHHHHHHhc---------------CCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 12233333 2332 257899999888854 368999999999986654433 2346777775
No 59
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.10 E-value=5.2e-10 Score=126.04 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=104.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceee---cCCCeEEecccccCC-
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALML---ADNGICCIDEFDKMD- 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~l---ad~GIl~IDE~dk~~- 466 (794)
++||+||||||||+++++++..+...++... ...+...... .+...+. ..+.. ...+|+||||+|.+.
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~~~~i~v~----~~~l~~~~~g---~~~~~i~-~~f~~a~~~~p~IlfiDEiD~l~~ 238 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GSELVQKFIG---EGARLVR-ELFELAREKAPSIIFIDEIDAIAA 238 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhCCCEEEee----hHHHhHhhcc---chHHHHH-HHHHHHHhcCCeEEEEechhhhhc
Confidence 7999999999999999999998776544321 1111111000 0111111 11111 135799999999872
Q ss_pred ----------hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccCccc
Q 003809 467 ----------IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALAPAF 527 (794)
Q Consensus 467 ----------~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~~ 527 (794)
...+..+.+.+..-. |.. -..++.||||+|.. +|||+....+. ..
T Consensus 239 ~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~--------~P 302 (389)
T PRK03992 239 KRTDSGTSGDREVQRTLMQLLAEMD------GFD--PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVP--------LP 302 (389)
T ss_pred ccccCCCCccHHHHHHHHHHHHhcc------ccC--CCCCEEEEEecCChhhCCHHHcCCccCceEEEEC--------CC
Confidence 334445555553211 111 11268899999964 24554433332 12
Q ss_pred cHHHHHHHHH-HHhcc--CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 528 TTAQLKRYIA-YAKTL--KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 528 ~~~~lr~yi~-~ar~~--~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
+.+.-..++. +.+.. .+.+.- ..| ...+-++|.+++.++++.|...|--+.+..|+.+|
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~~---~~l---------------a~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d 364 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVDL---EEL---------------AELTEGASGADLKAICTEAGMFAIRDDRTEVTMED 364 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCCH---HHH---------------HHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 2222222221 11111 111111 111 12234689999999999999999888889999999
Q ss_pred HHHHHHHHhhhc
Q 003809 605 VRVAVRLLKTSV 616 (794)
Q Consensus 605 v~eAi~L~~~s~ 616 (794)
+.+|+.-++.+.
T Consensus 365 ~~~A~~~~~~~~ 376 (389)
T PRK03992 365 FLKAIEKVMGKE 376 (389)
T ss_pred HHHHHHHHhccc
Confidence 999999876654
No 60
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.09 E-value=7.3e-10 Score=126.94 Aligned_cols=196 Identities=18% Similarity=0.251 Sum_probs=124.1
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccccccc----cccCCCCcccccccCceeecCCCeEEeccc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGLTAS----VAKEPETGEFCIEAGALMLADNGICCIDEF 462 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gLt~~----v~~d~~~g~~~~~~Gal~lad~GIl~IDE~ 462 (794)
.+++|.|++||||+.++++++..+++. ++..........+... ..+...+|.....+|.+..|++|++||||+
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i 242 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEI 242 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEech
Confidence 389999999999999999999987642 2211111111111111 011112343345688999999999999999
Q ss_pred ccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCccccc-Cccc-----cH-
Q 003809 463 DKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHEDAL-APAF-----TT- 529 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~~~~-~~~~-----~~- 529 (794)
+.|++..|..|+.+++++.+... |.....++++.+|+|+|+.. |.|....-.......+ -|++ +.
T Consensus 243 ~~l~~~~q~~l~~~l~~~~~~~~--~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~ 320 (445)
T TIGR02915 243 GDLPLNLQAKLLRFLQERVIERL--GGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAV 320 (445)
T ss_pred hhCCHHHHHHHHHHHhhCeEEeC--CCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHH
Confidence 99999999999999999987644 55556778899999999873 5554422100000000 0111 11
Q ss_pred HHHHHHHHH-Hhcc---CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Q 003809 530 AQLKRYIAY-AKTL---KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHV 605 (794)
Q Consensus 530 ~~lr~yi~~-ar~~---~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv 605 (794)
...+.|+.. ++.. .+.++++|...|.. ..||-++|+|+++++-+-..+. ...++.+|+
T Consensus 321 ~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~---------------~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 321 LLANAFLERFARELKRKTKGFTDDALRALEA---------------HAWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh---------------CCCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 123334432 2322 25799999988865 3689999999999986654433 335665553
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.07 E-value=9.4e-10 Score=119.98 Aligned_cols=198 Identities=18% Similarity=0.194 Sum_probs=115.1
Q ss_pred ceechhhHH--HH-HHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCCccCccccccc
Q 003809 357 TVFGHQDIK--RA-ILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSSAAGLTAS 432 (794)
Q Consensus 357 ~I~G~e~vK--~a-lll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss~~gLt~~ 432 (794)
+++||+.+- .+ |--++-+|.-. +++|.||||||||+|++.++..+...+.. +...++...+-..
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~------------SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLH------------SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI 92 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCc------------eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHH
Confidence 588888762 33 33344444422 79999999999999999999988776664 2222222222221
Q ss_pred cccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCC
Q 003809 433 VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDK 512 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~ 512 (794)
+.+. .. ......+-|+||||++++++..|.+|+..||+|+|.+. |-+ |-||.+. -
T Consensus 93 ~e~a---~~------~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilI--GAT-----------TENPsF~---l 147 (436)
T COG2256 93 IEEA---RK------NRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILI--GAT-----------TENPSFE---L 147 (436)
T ss_pred HHHH---HH------HHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEE--ecc-----------CCCCCee---e
Confidence 1110 00 01111245999999999999999999999999998765 211 2244321 0
Q ss_pred CCCccCcc-cccCccccHHHHHHHHHHHh-----c---cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHH
Q 003809 513 SKPLKKHE-DALAPAFTTAQLKRYIAYAK-----T---LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEA 583 (794)
Q Consensus 513 ~~~l~~~~-~~~~~~~~~~~lr~yi~~ar-----~---~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~Les 583 (794)
+-.+..+- -..-.+++.+++++-+..|- . ..+.++++|.+.|+.. ..-..|.+.+
T Consensus 148 n~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~----------------s~GD~R~aLN 211 (436)
T COG2256 148 NPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL----------------SNGDARRALN 211 (436)
T ss_pred cHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHh----------------cCchHHHHHH
Confidence 00011000 01123567788777776643 1 2356889888888752 1123477667
Q ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 584 LIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 584 liRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
++.++.-.++-+. ....+++++.+
T Consensus 212 ~LE~~~~~~~~~~--~~~~~~l~~~l 235 (436)
T COG2256 212 LLELAALSAEPDE--VLILELLEEIL 235 (436)
T ss_pred HHHHHHHhcCCCc--ccCHHHHHHHH
Confidence 7766666665443 22255554433
No 62
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.07 E-value=1.5e-09 Score=124.75 Aligned_cols=198 Identities=16% Similarity=0.187 Sum_probs=126.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccccccc-c---ccCCCCcccccccCceeecCCCeEEecccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGLTAS-V---AKEPETGEFCIEAGALMLADNGICCIDEFD 463 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gLt~~-v---~~d~~~g~~~~~~Gal~lad~GIl~IDE~d 463 (794)
++|+.|++||||+.++++++..+++. ++..........+... + .+...+|.....+|.+..|++|++||||++
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~ 247 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIG 247 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechh
Confidence 89999999999999999999876642 2221111111111111 0 111123444456899999999999999999
Q ss_pred cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCccccc-Cccc-----cH-H
Q 003809 464 KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHEDAL-APAF-----TT-A 530 (794)
Q Consensus 464 k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~~~~-~~~~-----~~-~ 530 (794)
.+++..|..|+.+++++.+.. .|.....+.++.+|+|+|... |+|....-.....-.+ -|++ +. .
T Consensus 248 ~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~ 325 (457)
T PRK11361 248 EMPLVLQAKLLRILQEREFER--IGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISL 325 (457)
T ss_pred hCCHHHHHHHHHHHhcCcEEe--CCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHH
Confidence 999999999999999988653 355566778899999999763 5554421111000000 0111 11 1
Q ss_pred HHHHHHHHH-hc--c-CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHH
Q 003809 531 QLKRYIAYA-KT--L-KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVR 606 (794)
Q Consensus 531 ~lr~yi~~a-r~--~-~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~ 606 (794)
..+.|+... +. . .+.++++|.+.|.. ..||-++|+|+++++-+...+ ....++.+|+.
T Consensus 326 l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~---------------~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~ 387 (457)
T PRK11361 326 LANHFLQKFSSENQRDIIDIDPMAMSLLTA---------------WSWPGNIRELSNVIERAVVMN---SGPIIFSEDLP 387 (457)
T ss_pred HHHHHHHHHHHHcCCCCCCcCHHHHHHHHc---------------CCCCCcHHHHHHHHHHHHHhC---CCCcccHHHCh
Confidence 233344332 22 1 25789999888854 368999999999998765443 24467887775
Q ss_pred HH
Q 003809 607 VA 608 (794)
Q Consensus 607 eA 608 (794)
..
T Consensus 388 ~~ 389 (457)
T PRK11361 388 PQ 389 (457)
T ss_pred Hh
Confidence 43
No 63
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.05 E-value=1.3e-09 Score=131.17 Aligned_cols=152 Identities=14% Similarity=0.192 Sum_probs=96.8
Q ss_pred chHHHhhhhcCCceechhhHHHHHHHHHh---CCcc-cccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 345 DFFNKIVDSIGPTVFGHQDIKRAILLMLL---GGVH-KLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 345 ~i~~~l~~si~p~I~G~e~vK~alll~L~---gg~~-~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
..+..|.+.+.-.|+||+.+++.|.-++. .|.. ...+.| ++||+||||||||.+++.+++.+...+...
T Consensus 447 ~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~-------~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i 519 (758)
T PRK11034 447 DTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVG-------SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_pred HHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcc-------eEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence 44567888899999999998887766654 2221 111222 799999999999999999999886544321
Q ss_pred CC-ccCccccccccccCCCCccc-ccccCcee----ecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeec
Q 003809 421 GK-SSSAAGLTASVAKEPETGEF-CIEAGALM----LADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLN 494 (794)
Q Consensus 421 g~-~ss~~gLt~~v~~d~~~g~~-~~~~Gal~----lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ 494 (794)
.. ..........+...+. |-. .-+.|.+. ....+|+++|||++++++.++.|+++|++|.++.. .|....+
T Consensus 520 d~se~~~~~~~~~LiG~~~-gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~-~g~~vd~- 596 (758)
T PRK11034 520 DMSEYMERHTVSRLIGAPP-GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKADF- 596 (758)
T ss_pred echhhcccccHHHHcCCCC-CcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC-CCceecC-
Confidence 11 0000000011111110 000 01122222 22468999999999999999999999999999864 3443333
Q ss_pred CceEEEEecCCC
Q 003809 495 ARTSILAAANPA 506 (794)
Q Consensus 495 ar~siiAaaNP~ 506 (794)
.++.+|+|+|.-
T Consensus 597 rn~iiI~TsN~g 608 (758)
T PRK11034 597 RNVVLVMTTNAG 608 (758)
T ss_pred CCcEEEEeCCcC
Confidence 368899999943
No 64
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.04 E-value=1e-09 Score=132.47 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=128.5
Q ss_pred CCceechhhHHHHHHHHHh--CCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCcccc
Q 003809 355 GPTVFGHQDIKRAILLMLL--GGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGL 429 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~--gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gL 429 (794)
+..++|.....+.++-++- ... +.+|||+|+|||||+.+|++++..+++. +..........++
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~------------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQS------------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCC------------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 3468888766655543322 221 2389999999999999999999987653 1111111111111
Q ss_pred ccc-cc---cCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCC
Q 003809 430 TAS-VA---KEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANP 505 (794)
Q Consensus 430 t~~-v~---~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP 505 (794)
... +. +...+|......|.+..|++|++||||++.++.+.|..|+.+++++.+... |.....+.++.+|+++|.
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL--GSNKIIQTDVRLIAATNR 520 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeC--CCCCcccceEEEEEeCCC
Confidence 111 11 111223223346778889999999999999999999999999999887654 444556678999999997
Q ss_pred CC------CCCCCCCC--ccCcccccCccc-----c-HHHHHHHHHH-Hhc--cC-CcCCHHHHHHHHHHHHHhccCCCC
Q 003809 506 AG------GRYDKSKP--LKKHEDALAPAF-----T-TAQLKRYIAY-AKT--LK-PKLSLEARKLLVDSYVALRRGDTT 567 (794)
Q Consensus 506 ~~------Gryd~~~~--l~~~~~~~~~~~-----~-~~~lr~yi~~-ar~--~~-P~ls~ea~~~L~~~Y~~lR~~~~~ 567 (794)
.. |+|....- +. .-...-|++ + ..+++.|+.. +++ .. +.++++|.+.|..
T Consensus 521 ~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~----------- 588 (686)
T PRK15429 521 DLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSN----------- 588 (686)
T ss_pred CHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh-----------
Confidence 63 44433110 10 000001111 1 1234445432 332 22 4689999888854
Q ss_pred CCCccccccCHHHHHHHHHHHHHHH
Q 003809 568 PGSRVAYRMTVRQLEALIRLSEAIA 592 (794)
Q Consensus 568 ~~~~~~~~iT~R~LesliRlseA~A 592 (794)
..||-++|+|+++++-+-..+
T Consensus 589 ----y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 589 ----MEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred ----CCCCCcHHHHHHHHHHHHHhC
Confidence 368999999999998765443
No 65
>CHL00176 ftsH cell division protein; Validated
Probab=99.04 E-value=1.3e-09 Score=129.14 Aligned_cols=214 Identities=19% Similarity=0.263 Sum_probs=113.8
Q ss_pred CceechhhHHHHHHHHH--hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCcc---Cccccc
Q 003809 356 PTVFGHQDIKRAILLML--LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSS---SAAGLT 430 (794)
Q Consensus 356 p~I~G~e~vK~alll~L--~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~s---s~~gLt 430 (794)
-+|.|.+.+|+.+.-.+ +........-|. +-.-++||+||||||||+++++++..+...++...... ...|..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~--~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~ 260 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGA--KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVG 260 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccC--CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhh
Confidence 35788888776553322 111111111121 12237999999999999999999998765544321100 001111
Q ss_pred cccccCCCCcccccccCceeecCCCeEEecccccCCh-----------hhHHHHHHHhhccEEEEeecceEEeecCceEE
Q 003809 431 ASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI-----------RDQVAIHEAMEQQTISITKAGIQATLNARTSI 499 (794)
Q Consensus 431 ~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~-----------~~~~~L~eame~~~isi~kaG~~~~l~ar~si 499 (794)
+...++. | .. + ......|+||||+|.+.. ..+..|...+..-. |. .-+.++.|
T Consensus 261 ~~~vr~l----F--~~-A-~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d------g~--~~~~~ViV 324 (638)
T CHL00176 261 AARVRDL----F--KK-A-KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD------GF--KGNKGVIV 324 (638)
T ss_pred HHHHHHH----H--HH-H-hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc------cc--cCCCCeeE
Confidence 1100000 0 00 0 011246999999997732 22233333332110 11 11346889
Q ss_pred EEecCCC---------CCCCCCCCCccCcccccCccccHHHHHHHHH-HHhccCCcCCHH-HHHHHHHHHHHhccCCCCC
Q 003809 500 LAAANPA---------GGRYDKSKPLKKHEDALAPAFTTAQLKRYIA-YAKTLKPKLSLE-ARKLLVDSYVALRRGDTTP 568 (794)
Q Consensus 500 iAaaNP~---------~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~-~ar~~~P~ls~e-a~~~L~~~Y~~lR~~~~~~ 568 (794)
|||+|.. +|||+....+. ..+.+....++. +++. +.+.++ ....+
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~--------lPd~~~R~~IL~~~l~~--~~~~~d~~l~~l-------------- 380 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVS--------LPDREGRLDILKVHARN--KKLSPDVSLELI-------------- 380 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEEC--------CCCHHHHHHHHHHHHhh--cccchhHHHHHH--------------
Confidence 9999985 36776655444 112222222221 1122 222221 11111
Q ss_pred CCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 569 GSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 569 ~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
+....++|.++|..+++-|...|.-+....|+.+|+.+|+.-+
T Consensus 381 -A~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 381 -ARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred -HhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 1223458999999999988777777788899999999998754
No 66
>PRK15115 response regulator GlrR; Provisional
Probab=99.03 E-value=2.3e-09 Score=122.78 Aligned_cols=197 Identities=19% Similarity=0.225 Sum_probs=126.1
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccc-----cccccccCCCCcccccccCceeecCCCeEEecc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAG-----LTASVAKEPETGEFCIEAGALMLADNGICCIDE 461 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~g-----Lt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE 461 (794)
.+++|.|++||||+.++++++..+++. +........... |++. .+...+|......|.+..+++|++||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGH-ARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCC-CcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 489999999999999999999987752 211111111111 1111 1112344445678899999999999999
Q ss_pred cccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCccccc-Ccc-----ccH
Q 003809 462 FDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHEDAL-APA-----FTT 529 (794)
Q Consensus 462 ~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~~~~-~~~-----~~~ 529 (794)
++.|++..|..|+.+|+++.+... |.....+.++.+|+|++... |+|....-.......+ -|+ -+.
T Consensus 237 i~~l~~~~q~~L~~~l~~~~~~~~--g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi 314 (444)
T PRK15115 237 IGDMPAPLQVKLLRVLQERKVRPL--GSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDI 314 (444)
T ss_pred cccCCHHHHHHHHHHHhhCCEEeC--CCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccH
Confidence 999999999999999999987533 55555667899999998652 4553321111000000 011 111
Q ss_pred -HHHHHHHHH-Hhcc---CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 530 -AQLKRYIAY-AKTL---KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 530 -~~lr~yi~~-ar~~---~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
..++.|+.. ++.. .+.++++|.+.|.. ..||-++|+|+++++.+-..+ -...++.+|
T Consensus 315 ~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~---------------~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~ 376 (444)
T PRK15115 315 PLLANHLLRQAAERHKPFVRAFSTDAMKRLMT---------------ASWPGNVRQLVNVIEQCVALT---SSPVISDAL 376 (444)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh---------------CCCCChHHHHHHHHHHHHHhC---CCCccChhh
Confidence 233455543 2322 23589999998865 368999999999998775543 244677777
Q ss_pred HHH
Q 003809 605 VRV 607 (794)
Q Consensus 605 v~e 607 (794)
+..
T Consensus 377 l~~ 379 (444)
T PRK15115 377 VEQ 379 (444)
T ss_pred hhh
Confidence 654
No 67
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.02 E-value=2.2e-09 Score=124.71 Aligned_cols=180 Identities=21% Similarity=0.233 Sum_probs=99.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCc---cCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKS---SSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~---ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~ 467 (794)
++||+||||||||+++++++..+...++..... +...|......++. | +. + .....+|+||||+|.+..
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~----f--~~-a-~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL----F--EQ-A-KKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHH----H--HH-H-HhcCCCEEEEechhhhhh
Confidence 699999999999999999999876655432110 00011111111100 0 00 0 011347999999997643
Q ss_pred hh--------------HHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCcccccC
Q 003809 468 RD--------------QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHEDALA 524 (794)
Q Consensus 468 ~~--------------~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~~ 524 (794)
.. .+.|+..|+. . .-+..+.||||+|+.. |||+....+.
T Consensus 162 ~r~~~~~~~~~~~~~~~~~lL~~~d~---------~--~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~------- 223 (495)
T TIGR01241 162 QRGAGLGGGNDEREQTLNQLLVEMDG---------F--GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVD------- 223 (495)
T ss_pred ccccCcCCccHHHHHHHHHHHhhhcc---------c--cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcC-------
Confidence 22 1223333321 1 1123588999999762 5666554444
Q ss_pred ccccHHHHHHHHH-HHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHH
Q 003809 525 PAFTTAQLKRYIA-YAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPR 603 (794)
Q Consensus 525 ~~~~~~~lr~yi~-~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~ 603 (794)
..+.+.-+..+. +.+..... ++.....+ .....++|.+++..+++-|...|.-+.+..|+.+
T Consensus 224 -~Pd~~~R~~il~~~l~~~~~~-~~~~l~~l---------------a~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~ 286 (495)
T TIGR01241 224 -LPDIKGREEILKVHAKNKKLA-PDVDLKAV---------------ARRTPGFSGADLANLLNEAALLAARKNKTEITMN 286 (495)
T ss_pred -CCCHHHHHHHHHHHHhcCCCC-cchhHHHH---------------HHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 112211111111 11221111 11111111 1223468899999999988777777777889999
Q ss_pred HHHHHHHHHh
Q 003809 604 HVRVAVRLLK 613 (794)
Q Consensus 604 dv~eAi~L~~ 613 (794)
|+.+|+.-..
T Consensus 287 ~l~~a~~~~~ 296 (495)
T TIGR01241 287 DIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 68
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.01 E-value=2.7e-09 Score=123.11 Aligned_cols=200 Identities=21% Similarity=0.242 Sum_probs=127.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhhCCcc---eee--cCCccC---ccccccccccCCCCcccccccCceeecCCCeEEec
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGIVPRS---VYT--SGKSSS---AAGLTASVAKEPETGEFCIEAGALMLADNGICCID 460 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~--~g~~ss---~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~ID 460 (794)
+.++||.|++||||+.++++++..+++. +.. +..... ...|++. .+...+|.....+|.+..+++|.+|||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~-~~g~~~~~~~~~~g~~~~a~~Gtl~l~ 239 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGH-EKGAFTGANTIRQGRFEQADGGTLFLD 239 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCC-CCCCCCCCCcCCCCCeeECCCCEEEEe
Confidence 3489999999999999999999998753 111 211100 0011111 011123334456888999999999999
Q ss_pred ccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCccccc-Cccc-----c
Q 003809 461 EFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHEDAL-APAF-----T 528 (794)
Q Consensus 461 E~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~~~~-~~~~-----~ 528 (794)
|++.|+...|..|+.+++++.+... |.....+.++.+|+|+|... |+|....-.......+ -|++ +
T Consensus 240 ~i~~l~~~~q~~L~~~l~~~~~~~~--~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~D 317 (469)
T PRK10923 240 EIGDMPLDVQTRLLRVLADGQFYRV--GGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERRED 317 (469)
T ss_pred ccccCCHHHHHHHHHHHhcCcEEeC--CCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhh
Confidence 9999999999999999999987654 44445556899999998762 4443211100000000 0111 1
Q ss_pred -HHHHHHHHHH-Hhcc---CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHH
Q 003809 529 -TAQLKRYIAY-AKTL---KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPR 603 (794)
Q Consensus 529 -~~~lr~yi~~-ar~~---~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~ 603 (794)
..+++.|+.. ++.. .+.++++|...|.. ..||-++|+|+++++.+-..+. ...|+.+
T Consensus 318 i~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~---------------~~wpgNv~eL~~~i~~~~~~~~---~~~i~~~ 379 (469)
T PRK10923 318 IPRLARHFLQVAARELGVEAKLLHPETEAALTR---------------LAWPGNVRQLENTCRWLTVMAA---GQEVLIQ 379 (469)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh---------------CCCCChHHHHHHHHHHHHHhCC---CCcccHH
Confidence 2234445443 3332 24689999888865 3699999999999987765543 4578888
Q ss_pred HHHHHH
Q 003809 604 HVRVAV 609 (794)
Q Consensus 604 dv~eAi 609 (794)
|+...+
T Consensus 380 ~l~~~~ 385 (469)
T PRK10923 380 DLPGEL 385 (469)
T ss_pred HCcHhh
Confidence 875443
No 69
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.01 E-value=2.8e-09 Score=122.68 Aligned_cols=210 Identities=17% Similarity=0.129 Sum_probs=115.4
Q ss_pred CCceechhhHHHHHHHH--HhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCcc---Ccccc
Q 003809 355 GPTVFGHQDIKRAILLM--LLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSS---SAAGL 429 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~--L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~s---s~~gL 429 (794)
+.+|.|.+.+|+-+.-. .+... ....|. +-.-.+||+||||||||.+++++++.+...++....+. ...|.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~--~~~~gl--~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQ--ASNYGL--PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHH--HHhcCC--CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccCh
Confidence 34689999998766432 11100 001121 11126999999999999999999999877666422111 11111
Q ss_pred ccccccCCCCcccccccCceeecCCCeEEecccccCChh------------hHHHHHHHhhccEEEEeecceEEeecCce
Q 003809 430 TASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR------------DQVAIHEAMEQQTISITKAGIQATLNART 497 (794)
Q Consensus 430 t~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~------------~~~~L~eame~~~isi~kaG~~~~l~ar~ 497 (794)
+...++. -+. .+ .....+|+||||+|++-.. ....++..|++. +..+
T Consensus 303 se~~l~~----~f~-~A---~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V 361 (489)
T CHL00195 303 SESRMRQ----MIR-IA---EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-------------KSPV 361 (489)
T ss_pred HHHHHHH----HHH-HH---HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-------------CCce
Confidence 1111110 000 00 0124589999999975321 123345555421 2357
Q ss_pred EEEEecCCCC---------CCCCCCCCccCcccccCccccHHHHHHHH--HHHhccCCcC-CHHHHHHHHHHHHHhccCC
Q 003809 498 SILAAANPAG---------GRYDKSKPLKKHEDALAPAFTTAQLKRYI--AYAKTLKPKL-SLEARKLLVDSYVALRRGD 565 (794)
Q Consensus 498 siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi--~~ar~~~P~l-s~ea~~~L~~~Y~~lR~~~ 565 (794)
.||||||... ||||....+. ++...-|+-| .+.+...|.. ++...+.|
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~---------lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~L----------- 421 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLD---------LPSLEEREKIFKIHLQKFRPKSWKKYDIKKL----------- 421 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeC---------CcCHHHHHHHHHHHHhhcCCCcccccCHHHH-----------
Confidence 8999999552 5676544433 2211111111 1122233321 11111112
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhh
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKT 614 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~ 614 (794)
...+.++|.++++.+++-|...|....+ .++.+|+..|+.-+.-
T Consensus 422 ----a~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 422 ----SKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDDILLALKQFIP 465 (489)
T ss_pred ----HhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCC
Confidence 2234578999999999988888876654 5899999999976543
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.99 E-value=1.7e-09 Score=120.83 Aligned_cols=179 Identities=17% Similarity=0.182 Sum_probs=99.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeec---CCCeEEecccccCC-
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDKMD- 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~- 466 (794)
++||+||||||||+++++++..+....+... ...+...... .+...+ ...+-.+ ..+|+||||+|.+.
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~~l~~~~~g---~~~~~i-~~~f~~a~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GSELVRKYIG---EGARLV-REIFELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hHHHHHHhhh---HHHHHH-HHHHHHHHhcCCcEEEhhhhhhhcc
Confidence 6999999999999999999998776554321 1111111000 000000 0111111 34699999999873
Q ss_pred ----------hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCcccccCccc
Q 003809 467 ----------IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHEDALAPAF 527 (794)
Q Consensus 467 ----------~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~~ 527 (794)
+..+..+.+.+..-. |. .-..++.||+|+|... |||+....+. ..
T Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~--------~P 293 (364)
T TIGR01242 230 KRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVP--------LP 293 (364)
T ss_pred ccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEecCChhhCChhhcCcccCceEEEeC--------Cc
Confidence 233445555553211 11 1123688999999642 3443322221 11
Q ss_pred cHHHHHHHHH-HHhcc--CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 528 TTAQLKRYIA-YAKTL--KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 528 ~~~~lr~yi~-~ar~~--~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
+.+.-...+. +++.. .+.++- ..+ ...+-++|.+++.++++.|...|-.+.+..|+.+|
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~~~~---~~l---------------a~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d 355 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAEDVDL---EAI---------------AKMTEGASGADLKAICTEAGMFAIREERDYVTMDD 355 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCccCCH---HHH---------------HHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Confidence 2222222111 11111 111111 111 11233578999999999999999999999999999
Q ss_pred HHHHHHH
Q 003809 605 VRVAVRL 611 (794)
Q Consensus 605 v~eAi~L 611 (794)
+.+|+.-
T Consensus 356 ~~~a~~~ 362 (364)
T TIGR01242 356 FIKAVEK 362 (364)
T ss_pred HHHHHHH
Confidence 9999875
No 71
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.2e-09 Score=124.91 Aligned_cols=204 Identities=20% Similarity=0.254 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHH
Q 003809 331 TEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 331 ~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~ 410 (794)
.+|+++|-++-++|.-|..+-..| |. .+||+||||||||.||+++|
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKi--------------------------Pk--------GvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKI--------------------------PK--------GVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcC--------------------------cC--------ceEEECCCCCcHHHHHHHHh
Confidence 467778888888898888843322 22 48999999999999999999
Q ss_pred hhCCcceeec-CCcc--CccccccccccCCCCcccccccCceeecCCCeEEecccccCChh---------------hHHH
Q 003809 411 GIVPRSVYTS-GKSS--SAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR---------------DQVA 472 (794)
Q Consensus 411 ~~~p~~~~~~-g~~s--s~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~---------------~~~~ 472 (794)
..+.-+++.. |.-. .-.|.-++-+++-+.-.... ...|+||||||..... ..+.
T Consensus 366 GEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~--------aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQ 437 (774)
T KOG0731|consen 366 GEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKN--------APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQ 437 (774)
T ss_pred cccCCceeeechHHHHHHhcccchHHHHHHHHHhhcc--------CCeEEEecccccccccccccccCCCChHHHHHHHH
Confidence 9998887752 2100 11122233333311111101 1369999999954322 2234
Q ss_pred HHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccCccccHHHHHHHHH--HHhc
Q 003809 473 IHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALAPAFTTAQLKRYIA--YAKT 541 (794)
Q Consensus 473 L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~--~ar~ 541 (794)
|+--|+ |...+ ..+.++|+||.. +||||+...+. .+...=|.-|- +++.
T Consensus 438 ll~emD---------gf~~~--~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~---------~p~~~~r~~i~~~h~~~ 497 (774)
T KOG0731|consen 438 LLVEMD---------GFETS--KGVIVLAATNRPDILDPALLRPGRFDRQIQID---------LPDVKGRASILKVHLRK 497 (774)
T ss_pred HHHHhc---------CCcCC--CcEEEEeccCCccccCHHhcCCCccccceecc---------CCchhhhHHHHHHHhhc
Confidence 444443 22212 458888888865 58999887766 22222222221 1222
Q ss_pred cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 542 LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 542 ~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
. .++.+..++.. + +..+-.+|...|-.+..-|+-+|.-+.++.|+..|+..|++-
T Consensus 498 ~--~~~~e~~dl~~-----~--------a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~R 552 (774)
T KOG0731|consen 498 K--KLDDEDVDLSK-----L--------ASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIER 552 (774)
T ss_pred c--CCCcchhhHHH-----H--------HhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHH
Confidence 2 22222222221 1 112456789999999999999999999999999999999983
No 72
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.9e-09 Score=123.57 Aligned_cols=217 Identities=19% Similarity=0.212 Sum_probs=127.0
Q ss_pred ceechhhHHHHHHHHHhCCc---ccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGV---HKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASV 433 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~---~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v 433 (794)
+|-|++++|+-+--++.-+. .++..-| +.-.-.|||+||||||||+++|++++.+...+... ..+.|....
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~G--i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv----kgpEL~sk~ 508 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFG--ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV----KGPELFSKY 508 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhc--CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec----cCHHHHHHh
Confidence 68889999987764432111 1111112 11112599999999999999999999876655431 222333332
Q ss_pred ccCCCCcccccc---cCceeecCCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEeecCceEE
Q 003809 434 AKEPETGEFCIE---AGALMLADNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNARTSI 499 (794)
Q Consensus 434 ~~d~~~g~~~~~---~Gal~lad~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~si 499 (794)
+.+ ++..+. --|=..| -.|+|+||+|.+..+ ..+.|+.-|+ |+... .++.|
T Consensus 509 vGe---SEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD---------G~e~~--k~V~V 573 (693)
T KOG0730|consen 509 VGE---SERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD---------GLEAL--KNVLV 573 (693)
T ss_pred cCc---hHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc---------ccccc--CcEEE
Confidence 222 111111 0011112 279999999954332 3456666664 22221 36899
Q ss_pred EEecCCC---------CCCCCCCCCccCcccccCccccHHHHHHHHHHHhccCCcCCHH-HHHHHHHHHHHhccCCCCCC
Q 003809 500 LAAANPA---------GGRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKTLKPKLSLE-ARKLLVDSYVALRRGDTTPG 569 (794)
Q Consensus 500 iAaaNP~---------~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~~~P~ls~e-a~~~L~~~Y~~lR~~~~~~~ 569 (794)
|||||.+ +||||+-..+. ++...-|.-|..+..-+-.++++ ..+.|..
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVp---------lPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~------------- 631 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVP---------LPDLEARLEILKQCAKKMPFSEDVDLEELAQ------------- 631 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeec---------CccHHHHHHHHHHHHhcCCCCccccHHHHHH-------------
Confidence 9999976 57887655544 44444444443333222223332 1122222
Q ss_pred CccccccCHHHHHHHHHHHHHHHHhc--CCCCcCHHHHHHHHHHHhhhccc
Q 003809 570 SRVAYRMTVRQLEALIRLSEAIARSH--LETQVHPRHVRVAVRLLKTSVIS 618 (794)
Q Consensus 570 ~~~~~~iT~R~LesliRlseA~Arl~--~~~~V~~~dv~eAi~L~~~s~~~ 618 (794)
.+-.+|.+.|..+.+-|...|--+ ....|+.+|.++|+.-.+.|+..
T Consensus 632 --~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~ 680 (693)
T KOG0730|consen 632 --ATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTS 680 (693)
T ss_pred --HhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCH
Confidence 244678899999999887666433 25789999999999998888754
No 73
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.96 E-value=4.1e-09 Score=118.69 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=99.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceee---cCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALML---ADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~l---ad~GIl~IDE~dk~~~ 467 (794)
++||+||||||||+++++++..+...++.... ..+..... ..+...+. -.+.. ...+|+||||+|.+..
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~~fi~i~~----s~l~~k~~---ge~~~~lr-~lf~~A~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG----SEFVQKYL---GEGPRMVR-DVFRLARENAPSIIFIDEVDSIAT 252 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh----HHHHHHhc---chhHHHHH-HHHHHHHhcCCeEEEEECHhhhcc
Confidence 69999999999999999999987665543211 01110000 00000000 00111 1357999999997631
Q ss_pred -----------hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCcccccCccc
Q 003809 468 -----------RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHEDALAPAF 527 (794)
Q Consensus 468 -----------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~~ 527 (794)
..+..+.+.+.+-. |.. -..++.+|+|||... |||+....+. ..
T Consensus 253 ~r~~~~~~~d~~~~r~l~~LL~~ld------~~~--~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~--------~P 316 (398)
T PTZ00454 253 KRFDAQTGADREVQRILLELLNQMD------GFD--QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP--------LP 316 (398)
T ss_pred ccccccCCccHHHHHHHHHHHHHhh------ccC--CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC--------Cc
Confidence 22334444443211 111 123577899999542 4444433332 11
Q ss_pred cHHHHHHHHH-HHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 528 TTAQLKRYIA-YAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 528 ~~~~lr~yi~-~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
+.+.-+..+. +.+. +.+.+.- ..+ ...+.++|.+++.++++-|...|--+.+..|+.+|
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dvd~---~~l---------------a~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~d 378 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEVDL---EDF---------------VSRPEKISAADIAAICQEAGMQAVRKNRYVILPKD 378 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCcccCH---HHH---------------HHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Confidence 1111111111 1111 1111110 011 12244689999999999999999888999999999
Q ss_pred HHHHHHHHhhh
Q 003809 605 VRVAVRLLKTS 615 (794)
Q Consensus 605 v~eAi~L~~~s 615 (794)
+.+|++-....
T Consensus 379 f~~A~~~v~~~ 389 (398)
T PTZ00454 379 FEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHhc
Confidence 99999886443
No 74
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.96 E-value=4.9e-09 Score=112.24 Aligned_cols=176 Identities=18% Similarity=0.219 Sum_probs=118.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCc---ccccccCceeecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETG---EFCIEAGALMLADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g---~~~~~~Gal~lad~GIl~IDE~dk~~~ 467 (794)
.+||.|++||||-.++++++..+||..-.-- .-+-++|........-.| .-.=+.|.+-+|++|.+|+|||..|++
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFl-alNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp 307 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFL-ALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP 307 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCee-EeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH
Confidence 6899999999999999999999998532100 001122222111110000 011257999999999999999999999
Q ss_pred hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCcc------------CcccccCccccH
Q 003809 468 RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLK------------KHEDALAPAFTT 529 (794)
Q Consensus 468 ~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~------------~~~~~~~~~~~~ 529 (794)
..|..|+..+.+|++.-. |......+++.||+|+.-.. |+|..+.--+ .+...+ .++..
T Consensus 308 ~lQaKLLRFL~DGtFRRV--Gee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di-~pL~e 384 (511)
T COG3283 308 RLQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDI-MPLAE 384 (511)
T ss_pred HHHHHHHHHhcCCceeec--CCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccc-hHHHH
Confidence 999999999999998755 77778888999999998652 5553322111 011111 11233
Q ss_pred HHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHH
Q 003809 530 AQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALI 585 (794)
Q Consensus 530 ~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~Lesli 585 (794)
-+++++-.....-.|.++++....|.. ..|+-++|||.+.|
T Consensus 385 ~Fv~q~s~elg~p~pkl~~~~~~~L~~---------------y~WpGNVRqL~N~i 425 (511)
T COG3283 385 LFVQQFSDELGVPRPKLAADLLTVLTR---------------YAWPGNVRQLKNAI 425 (511)
T ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHH---------------cCCCccHHHHHHHH
Confidence 344444444445689999998888765 36899999998876
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=1.5e-08 Score=116.51 Aligned_cols=213 Identities=15% Similarity=0.129 Sum_probs=121.2
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeec------
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTS------ 420 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~------ 420 (794)
|.+..-.-+.+|+||+.+++.|..++..|... -++||+||||||||++|+.+++.+.......
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~-----------~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKKNSIS-----------HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcCCCC-----------eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 34444445557999999988888777766421 0379999999999999999999765321100
Q ss_pred ---------CCccCccccccccccCCCCccccc----c-cC-ceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEe
Q 003809 421 ---------GKSSSAAGLTASVAKEPETGEFCI----E-AG-ALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISIT 485 (794)
Q Consensus 421 ---------g~~ss~~gLt~~v~~d~~~g~~~~----~-~G-al~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~ 485 (794)
|.......+.++. ..|.-.+ + .. .-..++..|++|||++.++...+.+|+..|++-
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p----- 144 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP----- 144 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc----cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-----
Confidence 0000000111110 0010000 0 00 012345679999999999999999999999852
Q ss_pred ecceEEeecCceE-EEEecCCCCCCCCCCCCccCcccc-cCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhc
Q 003809 486 KAGIQATLNARTS-ILAAANPAGGRYDKSKPLKKHEDA-LAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALR 562 (794)
Q Consensus 486 kaG~~~~l~ar~s-iiAaaNP~~Gryd~~~~l~~~~~~-~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR 562 (794)
+..+. |++|+||.. . ...+..+-.. .-.+++.+.+..++..+. ...-.++++|.+.|.+..
T Consensus 145 --------~~~vv~Ilattn~~k--l--~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s---- 208 (472)
T PRK14962 145 --------PSHVVFVLATTNLEK--V--PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA---- 208 (472)
T ss_pred --------CCcEEEEEEeCChHh--h--hHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh----
Confidence 11233 345555431 1 1111111111 113467777888877654 345579999998887621
Q ss_pred cCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 563 RGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 563 ~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
..+.|.+.+++..+.+. . ...|+.+||.+++..
T Consensus 209 ------------~GdlR~aln~Le~l~~~---~-~~~It~e~V~~~l~~ 241 (472)
T PRK14962 209 ------------SGGLRDALTMLEQVWKF---S-EGKITLETVHEALGL 241 (472)
T ss_pred ------------CCCHHHHHHHHHHHHHh---c-CCCCCHHHHHHHHcC
Confidence 12346655555432222 1 234899998887643
No 76
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.6e-09 Score=122.49 Aligned_cols=202 Identities=20% Similarity=0.265 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHH
Q 003809 331 TEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 331 ~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~ 410 (794)
.+|+.++-++.++|+-|..+ |+. .+. ++||+||||||||.|+++++
T Consensus 159 keel~EiVdfLk~p~ky~~l-----------------------Gak---iPk--------GvlLvGpPGTGKTLLAkAvA 204 (596)
T COG0465 159 KEELSELVDFLKNPKKYQAL-----------------------GAK---IPK--------GVLLVGPPGTGKTLLAKAVA 204 (596)
T ss_pred HHHHHHHHHHHhCchhhHhc-----------------------ccc---ccc--------ceeEecCCCCCcHHHHHHHh
Confidence 46677777788888888763 331 122 58999999999999999999
Q ss_pred hhCCcceee-cCCcc--CccccccccccCCCCcccccccCceeecCCCeEEecccccCChh--------------hHHHH
Q 003809 411 GIVPRSVYT-SGKSS--SAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR--------------DQVAI 473 (794)
Q Consensus 411 ~~~p~~~~~-~g~~s--s~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~--------------~~~~L 473 (794)
..++.+.+. +|... .-.|.-++-+||.+.... .. ..+|+||||+|..... ..+.|
T Consensus 205 gEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAk-------k~-aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQl 276 (596)
T COG0465 205 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK-------KN-APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL 276 (596)
T ss_pred cccCCCceeccchhhhhhhcCCCcHHHHHHHHHhh-------cc-CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHH
Confidence 999888775 33211 224555666665322111 11 1379999999965433 23445
Q ss_pred HHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccCccccHHHHHHHHHHHhc---
Q 003809 474 HEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKT--- 541 (794)
Q Consensus 474 ~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~--- 541 (794)
+.-|+-. . -+..+.++||||.. +||||+...+. .+.-..|..|..+..
T Consensus 277 LvEmDGF---------~--~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~---------~PDi~gRe~IlkvH~~~~ 336 (596)
T COG0465 277 LVEMDGF---------G--GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVE---------LPDIKGREQILKVHAKNK 336 (596)
T ss_pred HhhhccC---------C--CCCceEEEecCCCcccchHhhcCCCCcceeeecC---------CcchhhHHHHHHHHhhcC
Confidence 5555321 1 23457889999976 58998877665 222223333332221
Q ss_pred -cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 542 -LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 542 -~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
+.|.++-.. + ++.+.+++..+|++++.-|.-+|..+.+..|+..|+.+|+.-+
T Consensus 337 ~l~~~Vdl~~----------i--------Ar~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv 390 (596)
T COG0465 337 PLAEDVDLKK----------I--------ARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRV 390 (596)
T ss_pred CCCCcCCHHH----------H--------hhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHH
Confidence 333333321 1 1234567889999999999999999999999999999999754
No 77
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.93 E-value=1.2e-08 Score=123.68 Aligned_cols=194 Identities=19% Similarity=0.265 Sum_probs=111.6
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCcc--Ccc
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSS--SAA 427 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~s--s~~ 427 (794)
...-+..++||++.+|+.|+-.|...... .+.+|. .+||+||||+|||++++.+++.+++..+....+. ...
T Consensus 316 ~~~~l~~~~~g~~~vK~~i~~~l~~~~~~-----~~~~g~-~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~ 389 (784)
T PRK10787 316 AQEILDTDHYGLERVKDRILEYLAVQSRV-----NKIKGP-ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEA 389 (784)
T ss_pred HHHHhhhhccCHHHHHHHHHHHHHHHHhc-----ccCCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 34455667999999999998544422111 123555 4999999999999999999999887765322111 111
Q ss_pred ccccccccCCCCcccccccCcee------ecCCCeEEecccccCChhh----HHHHHHHhhc-cEEEEeecce--EEeec
Q 003809 428 GLTASVAKEPETGEFCIEAGALM------LADNGICCIDEFDKMDIRD----QVAIHEAMEQ-QTISITKAGI--QATLN 494 (794)
Q Consensus 428 gLt~~v~~d~~~g~~~~~~Gal~------lad~GIl~IDE~dk~~~~~----~~~L~eame~-~~isi~kaG~--~~~l~ 494 (794)
.+.+.. +. ..|. .+|.+. ...+.|++|||+|+++++. ..+|+++|+. +..++...-. ...+
T Consensus 390 ~i~g~~-~~-~~g~---~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl- 463 (784)
T PRK10787 390 EIRGHR-RT-YIGS---MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL- 463 (784)
T ss_pred Hhccch-hc-cCCC---CCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccC-
Confidence 111110 00 0111 233322 1245699999999999875 4899999984 4444432111 2222
Q ss_pred CceEEEEecCCCCCCCCCCCCccCccccc-CccccHHH----HHHHHH--HHhc-----cCCcCCHHHHHHHHHHHH
Q 003809 495 ARTSILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQ----LKRYIA--YAKT-----LKPKLSLEARKLLVDSYV 559 (794)
Q Consensus 495 ar~siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~----lr~yi~--~ar~-----~~P~ls~ea~~~L~~~Y~ 559 (794)
.++.+|||+|... -..++..|-+.+ ...++.+. .++|+. ..+. ....+++++.+.|++.|.
T Consensus 464 s~v~~i~TaN~~~----i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 464 SDVMFVATSNSMN----IPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CceEEEEcCCCCC----CCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 4689999999642 222222121111 23344443 344442 1111 345789999999988664
No 78
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.92 E-value=5e-09 Score=118.96 Aligned_cols=184 Identities=17% Similarity=0.182 Sum_probs=100.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeec---CCCeEEecccccCC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDKMD 466 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~ 466 (794)
-++||+||||||||+++++++..+...++... ...+...... .+.. .-...+..| ...|+||||+|.+.
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~----~seL~~k~~G---e~~~-~vr~lF~~A~~~~P~ILfIDEID~l~ 289 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLRVV----GSELIQKYLG---DGPK-LVRELFRVAEENAPSIVFIDEIDAIG 289 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe----cchhhhhhcc---hHHH-HHHHHHHHHHhCCCcEEeHHHHHHHh
Confidence 37999999999999999999998765544311 1111111100 0000 001111122 34699999999653
Q ss_pred h-----------hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCcccccCcc
Q 003809 467 I-----------RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHEDALAPA 526 (794)
Q Consensus 467 ~-----------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~ 526 (794)
. ..+..+.+.+.+-. |.. -..++.||+|+|... |||+....+. .
T Consensus 290 ~kR~~~~sgg~~e~qr~ll~LL~~Ld------g~~--~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~--------~ 353 (438)
T PTZ00361 290 TKRYDATSGGEKEIQRTMLELLNQLD------GFD--SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFP--------N 353 (438)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHh------hhc--ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeC--------C
Confidence 2 12334444443211 111 123578999999542 3443333222 1
Q ss_pred ccHHHHHHHHH-HHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHH
Q 003809 527 FTTAQLKRYIA-YAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPR 603 (794)
Q Consensus 527 ~~~~~lr~yi~-~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~ 603 (794)
.+.+..+..+. +.+. +.+.+.- +.+ .....++|.+++.++++-|...|.-+.+..|+.+
T Consensus 354 Pd~~~R~~Il~~~~~k~~l~~dvdl---~~l---------------a~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~ 415 (438)
T PTZ00361 354 PDEKTKRRIFEIHTSKMTLAEDVDL---EEF---------------IMAKDELSGADIKAICTEAGLLALRERRMKVTQA 415 (438)
T ss_pred CCHHHHHHHHHHHHhcCCCCcCcCH---HHH---------------HHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHH
Confidence 22222222221 1111 1111110 001 1123468899999999999999988899999999
Q ss_pred HHHHHHHHHhhh
Q 003809 604 HVRVAVRLLKTS 615 (794)
Q Consensus 604 dv~eAi~L~~~s 615 (794)
|+.+|++-....
T Consensus 416 D~~~A~~~v~~~ 427 (438)
T PTZ00361 416 DFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHhh
Confidence 999999886443
No 79
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.92 E-value=1.3e-08 Score=123.48 Aligned_cols=149 Identities=12% Similarity=0.174 Sum_probs=96.7
Q ss_pred hHHHhhhhcCCceechhhHHHHHHHHHhCC---c-ccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecC
Q 003809 346 FFNKIVDSIGPTVFGHQDIKRAILLMLLGG---V-HKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSG 421 (794)
Q Consensus 346 i~~~l~~si~p~I~G~e~vK~alll~L~gg---~-~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g 421 (794)
-+..+...+-..|+||+.+++.+.-++... . ....+.| ++||+||||||||.+++++++.+...+....
T Consensus 444 ~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~-------~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d 516 (731)
T TIGR02639 444 KLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVG-------SFLFTGPTGVGKTELAKQLAEALGVHLERFD 516 (731)
T ss_pred HHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCce-------eEEEECCCCccHHHHHHHHHHHhcCCeEEEe
Confidence 345678888999999999988887766532 1 1111222 6899999999999999999999865433211
Q ss_pred C-cc----Cccccccccc---cCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEee
Q 003809 422 K-SS----SAAGLTASVA---KEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATL 493 (794)
Q Consensus 422 ~-~s----s~~gLt~~v~---~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l 493 (794)
. .. +...+.++.. ....+|.. ..++.....+|++|||++++.++.++.|+++|++|.++.. .|....+
T Consensus 517 ~se~~~~~~~~~lig~~~gyvg~~~~~~l---~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~ 592 (731)
T TIGR02639 517 MSEYMEKHTVSRLIGAPPGYVGFEQGGLL---TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN-NGRKADF 592 (731)
T ss_pred CchhhhcccHHHHhcCCCCCcccchhhHH---HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecC-CCcccCC
Confidence 1 00 0011111100 00001100 0122233568999999999999999999999999998754 3544444
Q ss_pred cCceEEEEecCCC
Q 003809 494 NARTSILAAANPA 506 (794)
Q Consensus 494 ~ar~siiAaaNP~ 506 (794)
. ++.+|+|+|.-
T Consensus 593 ~-~~iii~Tsn~g 604 (731)
T TIGR02639 593 R-NVILIMTSNAG 604 (731)
T ss_pred C-CCEEEECCCcc
Confidence 3 68899999974
No 80
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.91 E-value=1e-08 Score=117.09 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=124.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccccccc-c---ccCCCCcccccccCceeecCCCeEEecccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGLTAS-V---AKEPETGEFCIEAGALMLADNGICCIDEFD 463 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gLt~~-v---~~d~~~g~~~~~~Gal~lad~GIl~IDE~d 463 (794)
++++.|++||||+.++++++..+++. ++..........+... + .+...+|......|.+..|++|++||||++
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~ 243 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccc
Confidence 79999999999999999999887653 2221111111111111 0 111122333346789999999999999999
Q ss_pred cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCccccc-Cccc-----c-HH
Q 003809 464 KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHEDAL-APAF-----T-TA 530 (794)
Q Consensus 464 k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~~~~-~~~~-----~-~~ 530 (794)
.|++..|..|+.+++.+.+... |.....+.++.+|+|++... |+|.+..-.......+ -|++ + ..
T Consensus 244 ~l~~~~q~~l~~~l~~~~~~~~--~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~ 321 (441)
T PRK10365 244 DISPMMQVRLLRAIQEREVQRV--GSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPL 321 (441)
T ss_pred cCCHHHHHHHHHHHccCcEEeC--CCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHH
Confidence 9999999999999999987544 55556677889999988663 5554321111000000 0111 1 12
Q ss_pred HHHHHHH-HHhcc---CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHH
Q 003809 531 QLKRYIA-YAKTL---KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVR 606 (794)
Q Consensus 531 ~lr~yi~-~ar~~---~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~ 606 (794)
..+.|+. +++.. .+.++++|...|.. ..||-++|+|+++++.+-..+ ....++.+|+.
T Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~---------------~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~ 383 (441)
T PRK10365 322 LAGHFLQRFAERNRKAVKGFTPQAMDLLIH---------------YDWPGNIRELENAVERAVVLL---TGEYISERELP 383 (441)
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHh---------------CCCCCHHHHHHHHHHHHHHhC---CCCccchHhCc
Confidence 2334443 23322 24589998888865 368999999999998765442 33467777765
Q ss_pred H
Q 003809 607 V 607 (794)
Q Consensus 607 e 607 (794)
.
T Consensus 384 ~ 384 (441)
T PRK10365 384 L 384 (441)
T ss_pred h
Confidence 4
No 81
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.91 E-value=3.9e-09 Score=121.16 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=122.4
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhhCCcc---ee-ecCCcc---CccccccccccCCCCcccc-cccCceeecCCCeEE
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VY-TSGKSS---SAAGLTASVAKEPETGEFC-IEAGALMLADNGICC 458 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~-~~g~~s---s~~gLt~~v~~d~~~g~~~-~~~Gal~lad~GIl~ 458 (794)
+-++++|+.|.|||||-.|+++++..+... +. .++... ....|++++-.+ ++|.+. -..|.+..|++|.+|
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~Ga-fTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGA-FTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccc-cccchhccccccceecCCCccH
Confidence 345689999999999999999999976531 11 122111 111223322211 333322 235889999999999
Q ss_pred ecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCcc--ccc----Ccc
Q 003809 459 IDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHE--DAL----APA 526 (794)
Q Consensus 459 IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~--~~~----~~~ 526 (794)
+|||..|+...|..|+.+++++.|+.. |... .+.++.||+||+... |+|....-.+... -.+ +..
T Consensus 413 ldeIgd~p~~~Qs~LLrVl~e~~v~p~--g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~ 489 (606)
T COG3284 413 LDEIGDMPLALQSRLLRVLQEGVVTPL--GGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERS 489 (606)
T ss_pred HHHhhhchHHHHHHHHHHHhhCceecc--CCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhccc
Confidence 999999999999999999999999876 5555 788999999999773 7775543322000 000 011
Q ss_pred ccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHH
Q 003809 527 FTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIA 592 (794)
Q Consensus 527 ~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~A 592 (794)
-....|.+|...--.-.-.|++++...|.. -.||-++|+|.++|+-+-+++
T Consensus 490 d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~---------------~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 490 DRIPLLDRILKRENDWRLQLDDDALARLLA---------------YRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred ccHHHHHHHHHHccCCCccCCHHHHHHHHh---------------CCCCCcHHHHHHHHHHHHHcC
Confidence 122334444321111334678888888765 369999999999998765543
No 82
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.91 E-value=1.7e-09 Score=108.22 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=74.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCC-----cceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEeccccc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVP-----RSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDK 464 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p-----~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk 464 (794)
.++||+||+|+|||.+++.+++.+- +.+.......+..+-....+ .....-.+|..-.+.+||+|||||||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~----~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSV----SKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHC----HHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhh----hhhhhcccceeeccchhhhhhHHHhh
Confidence 3899999999999999999999876 22222111111100000000 00011123445555678999999999
Q ss_pred CCh-----------hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 465 MDI-----------RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 465 ~~~-----------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
..+ ..|+.|+++||.++++-. .|....+. ++.+|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd~~-n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVDTS-NIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEEGT-TEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecc-cceEEEeC-CceEEEecccc
Confidence 999 999999999999999864 35445543 79999999954
No 83
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-08 Score=110.83 Aligned_cols=213 Identities=23% Similarity=0.264 Sum_probs=117.7
Q ss_pred ceechhhHHH----HHHHHH-----hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcc
Q 003809 357 TVFGHQDIKR----AILLML-----LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAA 427 (794)
Q Consensus 357 ~I~G~e~vK~----alll~L-----~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~ 427 (794)
+|.|.+++|+ |+++-+ |.|.. |-+-.|||+||||||||+||++++....--+|.. +++
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~Gir---------rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV----Sss 279 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIR---------RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV----SSS 279 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcc---------cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe----chh
Confidence 5778777655 554443 44432 2333699999999999999999999877555542 333
Q ss_pred ccccccccCCCCcccccccCceeec---CCCeEEecccccCCh------------hhHHHHHHHhhccEEEEeecceEEe
Q 003809 428 GLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDKMDI------------RDQVAIHEAMEQQTISITKAGIQAT 492 (794)
Q Consensus 428 gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~------------~~~~~L~eame~~~isi~kaG~~~~ 492 (794)
.|+.....+ .+..+. -.+-+| ...++||||||.+.. ...+.|+--|+ |...+
T Consensus 280 tltSKwRGe---SEKlvR-lLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~t 346 (491)
T KOG0738|consen 280 TLTSKWRGE---SEKLVR-LLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQGT 346 (491)
T ss_pred hhhhhhccc---hHHHHH-HHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh---------ccccc
Confidence 333322111 111111 011112 357999999995432 23445666664 33333
Q ss_pred ec--CceEEEEecCCCCCCCCCCCCccCcccccCccccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCC--
Q 003809 493 LN--ARTSILAAANPAGGRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTP-- 568 (794)
Q Consensus 493 l~--ar~siiAaaNP~~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~-- 568 (794)
+. ..+.||||||-++ .++..+.|++-. |-+-|--+.+++..|++. .||......
T Consensus 347 ~e~~k~VmVLAATN~PW------------------diDEAlrRRlEK--RIyIPLP~~~~R~~Li~~--~l~~~~~~~~~ 404 (491)
T KOG0738|consen 347 LENSKVVMVLAATNFPW------------------DIDEALRRRLEK--RIYIPLPDAEARSALIKI--LLRSVELDDPV 404 (491)
T ss_pred cccceeEEEEeccCCCc------------------chHHHHHHHHhh--heeeeCCCHHHHHHHHHH--hhccccCCCCc
Confidence 32 2488999999664 234444444421 223455566777777663 344332211
Q ss_pred ----CCccccccCHHHHHHHHHHHHHHH-----------------HhcCCCCcCHHHHHHHHHHHhhhcc
Q 003809 569 ----GSRVAYRMTVRQLEALIRLSEAIA-----------------RSHLETQVHPRHVRVAVRLLKTSVI 617 (794)
Q Consensus 569 ----~~~~~~~iT~R~LesliRlseA~A-----------------rl~~~~~V~~~dv~eAi~L~~~s~~ 617 (794)
.....-++|...+-.+.|-|--++ +=....-|+.+|+++|++-.+.|..
T Consensus 405 ~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 405 NLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 022234455666655555443332 2223345888888888887776653
No 84
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.2e-09 Score=121.15 Aligned_cols=144 Identities=19% Similarity=0.238 Sum_probs=86.5
Q ss_pred ceechhhHHHHHHHHHhCCcc--cccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVH--KLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~--~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
+|-|.+++|.-|+=.+--.-. --...|.+.| ..|||+||||||||.+||++|....-.+... .+..|....+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkR--SGILLYGPPGTGKTLlAKAVATEcsL~FlSV----KGPELLNMYV 746 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKR--SGILLYGPPGTGKTLLAKAVATECSLNFLSV----KGPELLNMYV 746 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhcccccc--ceeEEECCCCCchHHHHHHHHhhceeeEEee----cCHHHHHHHh
Confidence 677999999998765432111 0012233333 4799999999999999999999876655431 1223333222
Q ss_pred cCCCCc-ccccccCceeecCCCeEEecccccCChh-------------hHHHHHHHhhccEEEEeecceEEeecCceEEE
Q 003809 435 KEPETG-EFCIEAGALMLADNGICCIDEFDKMDIR-------------DQVAIHEAMEQQTISITKAGIQATLNARTSIL 500 (794)
Q Consensus 435 ~d~~~g-~~~~~~Gal~lad~GIl~IDE~dk~~~~-------------~~~~L~eame~~~isi~kaG~~~~l~ar~sii 500 (794)
...+.+ .-+++. --.|...|+|+||+|.+-|. ....|+.-|+ |....-...+.||
T Consensus 747 GqSE~NVR~VFer--AR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~VFVi 815 (953)
T KOG0736|consen 747 GQSEENVREVFER--ARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDVFVI 815 (953)
T ss_pred cchHHHHHHHHHH--hhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCceEEE
Confidence 211111 000110 11235589999999977665 2345555553 4444344579999
Q ss_pred EecCCC---------CCCCCCCCCcc
Q 003809 501 AAANPA---------GGRYDKSKPLK 517 (794)
Q Consensus 501 AaaNP~---------~Gryd~~~~l~ 517 (794)
||||.+ +||||+-.-+-
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG 841 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVG 841 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEec
Confidence 999976 59998755444
No 85
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2e-09 Score=113.92 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=105.3
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCcccccC----CCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCCcc
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKLTH----EGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSS 424 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~~~----~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~s 424 (794)
|...+---|.||+.+||.|..+......+... +... =+..||||+||+|+|||.||+.+++++..++-. ....-
T Consensus 55 ik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvE-L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 55 IKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVE-LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred HHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCcee-eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 33445557999999999998877654332111 1122 234699999999999999999999998766543 22222
Q ss_pred Cccccccc-----cccCCCCcccccccCceeecCCCeEEecccccCChh--------------hHHHHHHHhhccEEEEe
Q 003809 425 SAAGLTAS-----VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR--------------DQVAIHEAMEQQTISIT 485 (794)
Q Consensus 425 s~~gLt~~-----v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~--------------~~~~L~eame~~~isi~ 485 (794)
+.+|..+- +.|--...+ ..+..|..||++||||||+... .|.+|+..||--..++.
T Consensus 134 TEAGYVGEDVENillkLlqaad-----ydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVP 208 (408)
T COG1219 134 TEAGYVGEDVENILLKLLQAAD-----YDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVP 208 (408)
T ss_pred hhccccchhHHHHHHHHHHHcc-----cCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccC
Confidence 33443331 111001111 2344578999999999986433 68899999998888888
Q ss_pred ecceEEeecCceEEEEecCCC---CCCCCC
Q 003809 486 KAGIQATLNARTSILAAANPA---GGRYDK 512 (794)
Q Consensus 486 kaG~~~~l~ar~siiAaaNP~---~Gryd~ 512 (794)
..|....-+..|.-+-|+|-- +|-|+.
T Consensus 209 PqGGRKHP~Qe~iqvDT~NILFIcgGAF~G 238 (408)
T COG1219 209 PQGGRKHPQQEFIQVDTSNILFICGGAFAG 238 (408)
T ss_pred CCCCCCCCccceEEEcccceeEEecccccc
Confidence 777766667788888888865 466654
No 86
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.88 E-value=1.7e-08 Score=116.26 Aligned_cols=200 Identities=21% Similarity=0.262 Sum_probs=127.4
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccccccc-c---ccCCCCcccccccCceeecCCCeEEeccc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGLTAS-V---AKEPETGEFCIEAGALMLADNGICCIDEF 462 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gLt~~-v---~~d~~~g~~~~~~Gal~lad~GIl~IDE~ 462 (794)
+++++.|++||||+.++++++...++. ++..........+..+ + .+...+|...-..|.+..|++|++||||+
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei 237 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEI 237 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEch
Confidence 489999999999999999999987653 2221111111111111 0 11112333334578899999999999999
Q ss_pred ccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCcc-cccCcccc--HH---
Q 003809 463 DKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHE-DALAPAFT--TA--- 530 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~-~~~~~~~~--~~--- 530 (794)
+.++...|..|+++++++.+... |.....+.++.+|+|+|... |+|....-.+... ...-|++. .+
T Consensus 238 ~~l~~~~q~~ll~~l~~~~~~~~--~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~ 315 (463)
T TIGR01818 238 GDMPLDAQTRLLRVLADGEFYRV--GGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIP 315 (463)
T ss_pred hhCCHHHHHHHHHHHhcCcEEEC--CCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHH
Confidence 99999999999999999987654 44445566788999998763 5553211000000 00012221 12
Q ss_pred -HHHHHHHHH-hcc---CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Q 003809 531 -QLKRYIAYA-KTL---KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHV 605 (794)
Q Consensus 531 -~lr~yi~~a-r~~---~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv 605 (794)
.++.|+..+ +.. .+.++++|...|.. ..||-++|+|.++++-+-..|. ...++.+|+
T Consensus 316 ~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~---------------~~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l 377 (463)
T TIGR01818 316 RLARHFLALAARELDVEPKLLDPEALERLKQ---------------LRWPGNVRQLENLCRWLTVMAS---GDEVLVSDL 377 (463)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh---------------CCCCChHHHHHHHHHHHHHhCC---CCcccHHhc
Confidence 233444333 222 25799999988865 2689999999999987765543 457888887
Q ss_pred HHHH
Q 003809 606 RVAV 609 (794)
Q Consensus 606 ~eAi 609 (794)
...+
T Consensus 378 ~~~~ 381 (463)
T TIGR01818 378 PAEL 381 (463)
T ss_pred hHHH
Confidence 6554
No 87
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7e-09 Score=117.45 Aligned_cols=221 Identities=19% Similarity=0.254 Sum_probs=128.8
Q ss_pred ceechhhHHHHHHHHHhCCccccc-CCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLT-HEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAK 435 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~-~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~ 435 (794)
+|-|.+.++.-+-++++....+.. -...-++-.-.|||+||||||||.||+++++.+...+... -...|....+.
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV----KGPELlNkYVG 587 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV----KGPELLNKYVG 587 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee----cCHHHHHHHhh
Confidence 477889999988888876654311 1111223344799999999999999999999877655431 12334433322
Q ss_pred CCCCcccccccCceee---cCCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEeecCceEEEE
Q 003809 436 EPETGEFCIEAGALML---ADNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNARTSILA 501 (794)
Q Consensus 436 d~~~g~~~~~~Gal~l---ad~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~siiA 501 (794)
.. +..+.. .+.. +...|+|+||+|.|-+. ..+.|+.-|+ |...+ ..+.|||
T Consensus 588 ES---ErAVR~-vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElD---------Gl~~R--~gV~via 652 (802)
T KOG0733|consen 588 ES---ERAVRQ-VFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELD---------GLEER--RGVYVIA 652 (802)
T ss_pred hH---HHHHHH-HHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhc---------ccccc--cceEEEe
Confidence 11 111110 0111 13479999999976543 3456666663 22222 2488999
Q ss_pred ecCCC---------CCCCCCCCCccCcccccCccccHHHHHHHHHH--HhccCCcCCHHHH-HHHHHHHHHhccCCCCCC
Q 003809 502 AANPA---------GGRYDKSKPLKKHEDALAPAFTTAQLKRYIAY--AKTLKPKLSLEAR-KLLVDSYVALRRGDTTPG 569 (794)
Q Consensus 502 aaNP~---------~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~--ar~~~P~ls~ea~-~~L~~~Y~~lR~~~~~~~ 569 (794)
|||.+ +||+|...-+. ++...=|.-|.. .|+-+|.++++.- +.|.. .
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~---------lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~------~------ 711 (802)
T KOG0733|consen 653 ATNRPDIIDPAILRPGRLDKLLYVG---------LPNAEERVAILKTITKNTKPPLSSDVDLDEIAR------N------ 711 (802)
T ss_pred ecCCCcccchhhcCCCccCceeeec---------CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh------c------
Confidence 99976 58998766554 332222322322 2445777776532 12211 0
Q ss_pred CccccccCHHHHHHHHHHHHHHHH------hc-------CC---CCcCHHHHHHHHHHHhhhccc
Q 003809 570 SRVAYRMTVRQLEALIRLSEAIAR------SH-------LE---TQVHPRHVRVAVRLLKTSVIS 618 (794)
Q Consensus 570 ~~~~~~iT~R~LesliRlseA~Ar------l~-------~~---~~V~~~dv~eAi~L~~~s~~~ 618 (794)
..--++|...|-.|+|-|--.|- +. .+ ..++..|.++|++.++.|+-.
T Consensus 712 -~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~ 775 (802)
T KOG0733|consen 712 -TKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSE 775 (802)
T ss_pred -ccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccH
Confidence 01125788888888886644431 11 11 146778999999999888644
No 88
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.85 E-value=1.4e-08 Score=127.66 Aligned_cols=189 Identities=12% Similarity=0.187 Sum_probs=108.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec-CCccCc---ccccc---------------ccccCCCCc--c--------
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS-GKSSSA---AGLTA---------------SVAKEPETG--E-------- 441 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~-g~~ss~---~gLt~---------------~v~~d~~~g--~-------- 441 (794)
.|||+||||||||.||+++|..+..+.+.. +..... .|... .+.++..+. +
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~ 1711 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMD 1711 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhh
Confidence 599999999999999999999987766542 110000 00000 000000000 0
Q ss_pred cccccCc------eeec---CCCeEEecccccCChhh-----HHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC-
Q 003809 442 FCIEAGA------LMLA---DNGICCIDEFDKMDIRD-----QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA- 506 (794)
Q Consensus 442 ~~~~~Ga------l~la---d~GIl~IDE~dk~~~~~-----~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~- 506 (794)
.....|+ +-+| ..+|+||||||.+...+ ...|+..|.... . ..-...+.||||||.+
T Consensus 1712 m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~-~-------~~s~~~VIVIAATNRPD 1783 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC-E-------RCSTRNILVIASTHIPQ 1783 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc-c-------cCCCCCEEEEEeCCCcc
Confidence 0001111 2233 35799999999887653 344555553211 0 0112358899999966
Q ss_pred --------CCCCCCCCCccCcccccCcccc--HHHHHHHHHHHhccC--CcCCHHHHHHHHHHHHHhccCCCCCCCcccc
Q 003809 507 --------GGRYDKSKPLKKHEDALAPAFT--TAQLKRYIAYAKTLK--PKLSLEARKLLVDSYVALRRGDTTPGSRVAY 574 (794)
Q Consensus 507 --------~Gryd~~~~l~~~~~~~~~~~~--~~~lr~yi~~ar~~~--P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~ 574 (794)
+||||+...++ .|..+ .+.+. .+.+.+.++ +... ..+.+ +..+.
T Consensus 1784 ~LDPALLRPGRFDR~I~Ir------~Pd~p~R~kiL~-ILl~tkg~~L~~~~v--dl~~L---------------A~~T~ 1839 (2281)
T CHL00206 1784 KVDPALIAPNKLNTCIKIR------RLLIPQQRKHFF-TLSYTRGFHLEKKMF--HTNGF---------------GSITM 1839 (2281)
T ss_pred cCCHhHcCCCCCCeEEEeC------CCCchhHHHHHH-HHHhhcCCCCCcccc--cHHHH---------------HHhCC
Confidence 48998877665 11111 11111 112333221 1110 01111 23356
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 575 RMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 575 ~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
+.|.++|.+|++-|..+|..+.+..|+..|+..|+.-
T Consensus 1840 GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~R 1876 (2281)
T CHL00206 1840 GSNARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1876 (2281)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 7899999999999999999999999999999999864
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.85 E-value=2.5e-08 Score=119.74 Aligned_cols=198 Identities=19% Similarity=0.201 Sum_probs=110.7
Q ss_pred CceechhhHHH--HHHHHHh-CCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccc
Q 003809 356 PTVFGHQDIKR--AILLMLL-GGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTAS 432 (794)
Q Consensus 356 p~I~G~e~vK~--alll~L~-gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~ 432 (794)
.+++|++.+.. ..+..++ ++.. -|++|+||||||||++++++++.....+..... +..++..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~------------~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna--~~~~i~d- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRV------------GSLILYGPPGVGKTTLARIIANHTRAHFSSLNA--VLAGVKD- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCC------------ceEEEECCCCCCHHHHHHHHHHHhcCcceeehh--hhhhhHH-
Confidence 36789888753 3343333 3221 189999999999999999999876543322111 1111100
Q ss_pred cccCCCCcccccccC--ce-eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEec--CCCC
Q 003809 433 VAKEPETGEFCIEAG--AL-MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAA--NPAG 507 (794)
Q Consensus 433 v~~d~~~g~~~~~~G--al-~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaa--NP~~ 507 (794)
.+. .++.. .+ .....+++||||++.++...+.+|+..|+++.+. +++++ ||..
T Consensus 93 -ir~------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~Ii---------------LI~aTTenp~~ 150 (725)
T PRK13341 93 -LRA------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTIT---------------LIGATTENPYF 150 (725)
T ss_pred -HHH------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEE---------------EEEecCCChHh
Confidence 000 00000 00 1124569999999999999999999999887643 33333 3221
Q ss_pred CCCCCCCCccCcc-cccCccccHHHHHHHHHHHhc--------cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCH
Q 003809 508 GRYDKSKPLKKHE-DALAPAFTTAQLKRYIAYAKT--------LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTV 578 (794)
Q Consensus 508 Gryd~~~~l~~~~-~~~~~~~~~~~lr~yi~~ar~--------~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~ 578 (794)
. .+ ..+..+. ...-++++.+++...+..+-. ....+++++.+.|.++. +-.+
T Consensus 151 ~-l~--~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s----------------~GD~ 211 (725)
T PRK13341 151 E-VN--KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA----------------NGDA 211 (725)
T ss_pred h-hh--hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC----------------CCCH
Confidence 0 00 0000000 001234556666655544322 24578999988887621 2457
Q ss_pred HHHHHHHHHHHHHHHhcCC--CCcCHHHHHHHH
Q 003809 579 RQLEALIRLSEAIARSHLE--TQVHPRHVRVAV 609 (794)
Q Consensus 579 R~LesliRlseA~Arl~~~--~~V~~~dv~eAi 609 (794)
|++.+++..+...+..... ..++.+++++++
T Consensus 212 R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l 244 (725)
T PRK13341 212 RSLLNALELAVESTPPDEDGLIDITLAIAEESI 244 (725)
T ss_pred HHHHHHHHHHHHhcccCCCCceeccHHHHHHHH
Confidence 9999998876644432222 236777777765
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=98.85 E-value=4.4e-08 Score=107.60 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=108.4
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee----ecCCccCccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY----TSGKSSSAAGLTAS 432 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g~~ss~~gLt~~ 432 (794)
++.||+.+...|--.+.++... |+||+||||||||++++++++.+....+ .....+...|..
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~~~------------~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-- 79 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGNMP------------NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-- 79 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCCCc------------eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH--
Confidence 4678988887765544444321 8999999999999999999987522111 110101111100
Q ss_pred cccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCC
Q 003809 433 VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDK 512 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~ 512 (794)
++++.- ..+......+......+++|||+|.|+...|++|+..||.- +..+.++.++|+... .
T Consensus 80 ~vr~~i-~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~~-i-- 142 (319)
T PLN03025 80 VVRNKI-KMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTSSK-I-- 142 (319)
T ss_pred HHHHHH-HHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCccc-c--
Confidence 111100 00000000011123469999999999999999999999731 122445556664321 1
Q ss_pred CCCccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHH
Q 003809 513 SKPLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEA 590 (794)
Q Consensus 513 ~~~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA 590 (794)
..++..+-..+ -+.++.+.+..++... +.-.-.+++++.+.|+... .-+.|.+.+.+..+.
T Consensus 143 ~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~----------------~gDlR~aln~Lq~~~- 205 (319)
T PLN03025 143 IEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTA----------------DGDMRQALNNLQATH- 205 (319)
T ss_pred chhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------------CCCHHHHHHHHHHHH-
Confidence 11111111111 1345667777666553 3445677888877776521 234566666665222
Q ss_pred HHHhcCCCCcCHHHHHHH
Q 003809 591 IARSHLETQVHPRHVRVA 608 (794)
Q Consensus 591 ~Arl~~~~~V~~~dv~eA 608 (794)
. ....|+.++|.+.
T Consensus 206 ---~-~~~~i~~~~v~~~ 219 (319)
T PLN03025 206 ---S-GFGFVNQENVFKV 219 (319)
T ss_pred ---h-cCCCCCHHHHHHH
Confidence 1 2456888887653
No 91
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.83 E-value=4.1e-08 Score=111.66 Aligned_cols=196 Identities=18% Similarity=0.186 Sum_probs=110.5
Q ss_pred ceechhhHH---HHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccc
Q 003809 357 TVFGHQDIK---RAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASV 433 (794)
Q Consensus 357 ~I~G~e~vK---~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v 433 (794)
+++|++.+. +.+.-.+.++... |++|+||||||||++++.+++.+............ +. ..
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~------------~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--~~--~~ 76 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLS------------SMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--GV--KD 76 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCc------------eEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--cH--HH
Confidence 578888773 2244444333211 89999999999999999999877654433211111 10 00
Q ss_pred ccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEec--CCCCCCCC
Q 003809 434 AKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAA--NPAGGRYD 511 (794)
Q Consensus 434 ~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaa--NP~~Gryd 511 (794)
++... +. . ........+.++||||+++++...+..|+..|+.+.+. +++++ ||... .
T Consensus 77 ir~ii--~~-~-~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~ii---------------lI~att~n~~~~-l- 135 (413)
T PRK13342 77 LREVI--EE-A-RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTIT---------------LIGATTENPSFE-V- 135 (413)
T ss_pred HHHHH--HH-H-HHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEE---------------EEEeCCCChhhh-c-
Confidence 00000 00 0 00011225679999999999999999999999876643 33332 33210 0
Q ss_pred CCCCccCcc-cccCccccHHHHHHHHHHHhc-c--C-CcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHH
Q 003809 512 KSKPLKKHE-DALAPAFTTAQLKRYIAYAKT-L--K-PKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIR 586 (794)
Q Consensus 512 ~~~~l~~~~-~~~~~~~~~~~lr~yi~~ar~-~--~-P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliR 586 (794)
...+..+- ...-++++.+.+..++..+.. . . ..+++++.+.|..+ .+-.+|.+.+++.
T Consensus 136 -~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~----------------s~Gd~R~aln~Le 198 (413)
T PRK13342 136 -NPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARL----------------ANGDARRALNLLE 198 (413)
T ss_pred -cHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHh----------------CCCCHHHHHHHHH
Confidence 00111000 001124566666666655421 1 2 26888887777552 0234687777766
Q ss_pred HHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 587 LSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 587 lseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
.+... ...|+.+++.+++.-
T Consensus 199 ~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 199 LAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred HHHHc-----cCCCCHHHHHHHHhh
Confidence 55433 567999999888764
No 92
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.82 E-value=1.1e-08 Score=125.00 Aligned_cols=197 Identities=21% Similarity=0.317 Sum_probs=107.5
Q ss_pred HHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCc--cC
Q 003809 348 NKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKS--SS 425 (794)
Q Consensus 348 ~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~--ss 425 (794)
..+-..+...++|++.+|+.|+-.+....... ..+|. ++||+||||||||++++++++.+.+..+....+ ..
T Consensus 312 ~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-----~~~~~-~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~ 385 (775)
T TIGR00763 312 KRAKEILDEDHYGLKKVKERILEYLAVQKLRG-----KMKGP-ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRD 385 (775)
T ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-----CCCCc-eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCccc
Confidence 44566777889999999998876544221110 12333 799999999999999999999987766532111 01
Q ss_pred ccccccccccCCCCcccccccCc----ee--ecCCCeEEecccccCChhhH----HHHHHHhhc---cEEEEeecceEEe
Q 003809 426 AAGLTASVAKEPETGEFCIEAGA----LM--LADNGICCIDEFDKMDIRDQ----VAIHEAMEQ---QTISITKAGIQAT 492 (794)
Q Consensus 426 ~~gLt~~v~~d~~~g~~~~~~Ga----l~--lad~GIl~IDE~dk~~~~~~----~~L~eame~---~~isi~kaG~~~~ 492 (794)
...+.+.. +. ..|. .+|. +. ...+.|++|||||++.+..+ ++|++.|+. +.+.-..-+....
T Consensus 386 ~~~i~g~~-~~-~~g~---~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 386 EAEIRGHR-RT-YVGA---MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred HHHHcCCC-Cc-eeCC---CCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceec
Confidence 11111100 00 0000 0111 11 12456999999999987543 789999974 2222111122222
Q ss_pred ecCceEEEEecCCCCCCCCCCCCccCccccc-CccccHH----HHHHHHHHH--h--cc---CCcCCHHHHHHHHHHHH
Q 003809 493 LNARTSILAAANPAGGRYDKSKPLKKHEDAL-APAFTTA----QLKRYIAYA--K--TL---KPKLSLEARKLLVDSYV 559 (794)
Q Consensus 493 l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~----~lr~yi~~a--r--~~---~P~ls~ea~~~L~~~Y~ 559 (794)
+ .++.+|+|+|+... . ..++..+-..+ -+.++.+ .+++|+.-. + .+ .-.+++++...|++.|.
T Consensus 461 ~-s~v~~I~TtN~~~~-i--~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 461 L-SKVIFIATANSIDT-I--PRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred c-CCEEEEEecCCchh-C--CHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 2 36889999998531 1 11111111111 1234433 344444211 1 12 23589999999988664
No 93
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.82 E-value=1.6e-08 Score=108.60 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=104.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeec---CCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~ 467 (794)
|+||+||+|||||.+++.+...++...|........+.-++..++..-.+......|...-. ..-|+|||+++.-.+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~ 114 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQP 114 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S--
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCC
Confidence 89999999999999998887766654432111111111111111111001111112222222 233999999996543
Q ss_pred h------hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCccc--ccCcccc-------HHHH
Q 003809 468 R------DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHED--ALAPAFT-------TAQL 532 (794)
Q Consensus 468 ~------~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~--~~~~~~~-------~~~l 532 (794)
+ ....|.+.|++|-+.-.+......+. ++.++||+||..||..-...+...-. .+..+-. ...+
T Consensus 115 d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~-~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 115 DKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIE-DIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDESLNTIFSSIL 193 (272)
T ss_dssp -TTS--HHHHHHHHHHHCSEEECTTTTEEEEEC-SEEEEEEESSTTT--SHHHHHHTTEEEEE----TCCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEe-eeEEEEecCCCCCCCCCChHHhhheEEEEecCCChHHHHHHHHHHH
Confidence 3 34678899999887765433344443 79999999998887521111111100 1111111 1223
Q ss_pred HHHHHHHhccC---CcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHH
Q 003809 533 KRYIAYAKTLK---PKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLS 588 (794)
Q Consensus 533 r~yi~~ar~~~---P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRls 588 (794)
+.++... .+. ..+.+......++.|..++..-.....+..|.+++|.+.++++--
T Consensus 194 ~~~l~~~-~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGi 251 (272)
T PF12775_consen 194 QSHLKNG-GFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGI 251 (272)
T ss_dssp HHHTCHT-TSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHH
T ss_pred hhhcccC-CCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHH
Confidence 3333211 111 234566777888999998876543335678999999998888743
No 94
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.9e-08 Score=116.39 Aligned_cols=194 Identities=22% Similarity=0.317 Sum_probs=115.0
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccc
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGL 429 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gL 429 (794)
...-+--+-||.+.+|.-|+-.|+=+... .++.|.| +||+||||+|||.|+++||+.+.|.++...- .|+
T Consensus 317 a~~iLd~dHYGLekVKeRIlEyLAV~~l~-----~~~kGpI-LcLVGPPGVGKTSLgkSIA~al~RkfvR~sL----GGv 386 (782)
T COG0466 317 AEKILDKDHYGLEKVKERILEYLAVQKLT-----KKLKGPI-LCLVGPPGVGKTSLGKSIAKALGRKFVRISL----GGV 386 (782)
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHHh-----ccCCCcE-EEEECCCCCCchhHHHHHHHHhCCCEEEEec----Ccc
Confidence 34456668899999999998777644322 2344554 8999999999999999999999998775311 121
Q ss_pred ccccccCCCCccccc----ccCceeec------CCCeEEecccccCChhhH----HHHHHHhh-ccEEEEeec--ceEEe
Q 003809 430 TASVAKEPETGEFCI----EAGALMLA------DNGICCIDEFDKMDIRDQ----VAIHEAME-QQTISITKA--GIQAT 492 (794)
Q Consensus 430 t~~v~~d~~~g~~~~----~~Gal~la------d~GIl~IDE~dk~~~~~~----~~L~eame-~~~isi~ka--G~~~~ 492 (794)
.--.. --|.... -||.+..+ .|-+++|||+|||+.+.+ ++|+|+++ .|.-++..- .....
T Consensus 387 rDEAE---IRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 387 RDEAE---IRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred ccHHH---hccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc
Confidence 11000 0111111 24444433 467999999999987754 68999995 333333211 12233
Q ss_pred ecCceEEEEecCCCCCCCCCCCCccCcccccC-cccc-HHH---HHHHHHH--Hh--cc---CCcCCHHHHHHHHHHHHH
Q 003809 493 LNARTSILAAANPAGGRYDKSKPLKKHEDALA-PAFT-TAQ---LKRYIAY--AK--TL---KPKLSLEARKLLVDSYVA 560 (794)
Q Consensus 493 l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~~-~~~~-~~~---lr~yi~~--ar--~~---~P~ls~ea~~~L~~~Y~~ 560 (794)
| +.+.|+||||-... -..+|..+-+.+. +.|+ .+. -++|+-= .+ -+ .-.++++|...|+++|+.
T Consensus 464 L-S~VmFiaTANsl~t---IP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTR 539 (782)
T COG0466 464 L-SKVMFIATANSLDT---IPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTR 539 (782)
T ss_pred h-hheEEEeecCcccc---CChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhH
Confidence 3 36899999995320 1223332323221 1222 222 2333211 01 12 346899999999999975
No 95
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.5e-08 Score=114.87 Aligned_cols=162 Identities=19% Similarity=0.270 Sum_probs=92.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccc---cccCCCCcccccccCceeecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTAS---VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~---v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~ 467 (794)
.+||.||||||||.||++++..+...++......-..|..+. -+++-+..... ....|+||||||-+.+
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~--------~aPcivFiDeIDAI~p 296 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKS--------NAPCIVFIDEIDAITP 296 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhc--------cCCeEEEeeccccccc
Confidence 489999999999999999999988887753222222222221 11111111111 1237999999997776
Q ss_pred hhH-----------HHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCcccccCccc
Q 003809 468 RDQ-----------VAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHEDALAPAF 527 (794)
Q Consensus 468 ~~~-----------~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~~ 527 (794)
.-. ..|+..|+.-. ...+....+.||||||.+. ||||+...+. .
T Consensus 297 kRe~aqreMErRiVaQLlt~mD~l~-------~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~---------v 360 (802)
T KOG0733|consen 297 KREEAQREMERRIVAQLLTSMDELS-------NEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLG---------V 360 (802)
T ss_pred chhhHHHHHHHHHHHHHHHhhhccc-------ccccCCCCeEEEecCCCCcccCHHHhccccccceeeec---------C
Confidence 633 34455553322 1122346799999999763 7887766555 3
Q ss_pred cHHHHHHHHHHH--hc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHh
Q 003809 528 TTAQLKRYIAYA--KT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARS 594 (794)
Q Consensus 528 ~~~~lr~yi~~a--r~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl 594 (794)
+.+.-|.-|... +. +.+.|.-. .+ ++-+-++-...|.+|++.|...|-=
T Consensus 361 P~e~aR~~IL~~~~~~lrl~g~~d~~----------ql--------A~lTPGfVGADL~AL~~~Aa~vAik 413 (802)
T KOG0733|consen 361 PSETAREEILRIICRGLRLSGDFDFK----------QL--------AKLTPGFVGADLMALCREAAFVAIK 413 (802)
T ss_pred CchHHHHHHHHHHHhhCCCCCCcCHH----------HH--------HhcCCCccchhHHHHHHHHHHHHHH
Confidence 333333333221 11 22222221 11 2234456678899999988776643
No 96
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.81 E-value=2.1e-08 Score=121.88 Aligned_cols=217 Identities=19% Similarity=0.211 Sum_probs=115.4
Q ss_pred CceechhhHHHHHHHHHhCCccc-ccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHK-LTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~-~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
-+|.|++.+|+.|.-.+.-.... .......++-.-++||+||||||||+++++++..+...++... .+.+....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~----~~~l~~~~v 528 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR----GPEILSKWV 528 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe----hHHHhhccc
Confidence 35789999988776554321110 0011111222336999999999999999999998776554321 111111111
Q ss_pred cCCCCcccccccCcee---ecCCCeEEecccccCChh------------hHHHHHHHhhccEEEEeecceEEeecCceEE
Q 003809 435 KEPETGEFCIEAGALM---LADNGICCIDEFDKMDIR------------DQVAIHEAMEQQTISITKAGIQATLNARTSI 499 (794)
Q Consensus 435 ~d~~~g~~~~~~Gal~---lad~GIl~IDE~dk~~~~------------~~~~L~eame~~~isi~kaG~~~~l~ar~si 499 (794)
.. .+..+.. .+. .+..+|+||||+|.+-+. ..+.|+..|+. . .-+.++.|
T Consensus 529 Ge---se~~i~~-~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg---------~--~~~~~v~v 593 (733)
T TIGR01243 529 GE---SEKAIRE-IFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG---------I--QELSNVVV 593 (733)
T ss_pred Cc---HHHHHHH-HHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc---------c--cCCCCEEE
Confidence 00 0100100 011 123579999999976321 23345555542 1 11346899
Q ss_pred EEecCCC---------CCCCCCCCCccCcccccCccccHHHHHHHHH--HHhccCCcCCHH-HHHHHHHHHHHhccCCCC
Q 003809 500 LAAANPA---------GGRYDKSKPLKKHEDALAPAFTTAQLKRYIA--YAKTLKPKLSLE-ARKLLVDSYVALRRGDTT 567 (794)
Q Consensus 500 iAaaNP~---------~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~--~ar~~~P~ls~e-a~~~L~~~Y~~lR~~~~~ 567 (794)
|||||.. +|||+....+. .+...-|.-|. +.+.. | ++++ ..+.|.
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~---------~Pd~~~R~~i~~~~~~~~-~-~~~~~~l~~la------------ 650 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVP---------PPDEEARKEIFKIHTRSM-P-LAEDVDLEELA------------ 650 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeC---------CcCHHHHHHHHHHHhcCC-C-CCccCCHHHHH------------
Confidence 9999976 26676554443 22222222221 11221 1 1111 111121
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHhcC------------------CCCcCHHHHHHHHHHHhhhcc
Q 003809 568 PGSRVAYRMTVRQLEALIRLSEAIARSHL------------------ETQVHPRHVRVAVRLLKTSVI 617 (794)
Q Consensus 568 ~~~~~~~~iT~R~LesliRlseA~Arl~~------------------~~~V~~~dv~eAi~L~~~s~~ 617 (794)
..+-++|.+++..+++-|.-.|..+. ...|+.+|+.+|+.-++.|+.
T Consensus 651 ---~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 651 ---EMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred ---HHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 12335788999999987766554421 126899999999987766643
No 97
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.79 E-value=6.9e-08 Score=119.04 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=92.2
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCC----cccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc---ee-
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGG----VHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VY- 418 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg----~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~- 418 (794)
+..|...+...|+||+.+.+.+.-++... .....+.+ .+||+||||||||.++++++..+... +.
T Consensus 556 l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~-------~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~ 628 (852)
T TIGR03346 556 LLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIG-------SFLFLGPTGVGKTELAKALAEFLFDDEDAMVR 628 (852)
T ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCe-------EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEE
Confidence 34456667788999999888777666532 21111222 68999999999999999999976321 11
Q ss_pred ecCCccC----ccccccccccCCCCcccccccCce----eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceE
Q 003809 419 TSGKSSS----AAGLTASVAKEPETGEFCIEAGAL----MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQ 490 (794)
Q Consensus 419 ~~g~~ss----~~gLt~~v~~d~~~g~~~~~~Gal----~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~ 490 (794)
....... ...|.++.-.. .| .-+.|.+ ......|+++|||+++++..++.|+++|++|.++.. .|..
T Consensus 629 ~d~s~~~~~~~~~~l~g~~~g~--~g--~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~ 703 (852)
T TIGR03346 629 IDMSEYMEKHSVARLIGAPPGY--VG--YEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRT 703 (852)
T ss_pred EechhhcccchHHHhcCCCCCc--cC--cccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecC-CCeE
Confidence 1111000 00111110000 00 0011222 122346999999999999999999999999998854 3555
Q ss_pred EeecCceEEEEecCCC
Q 003809 491 ATLNARTSILAAANPA 506 (794)
Q Consensus 491 ~~l~ar~siiAaaNP~ 506 (794)
..+. ++.||+|+|-.
T Consensus 704 vd~r-n~iiI~TSn~g 718 (852)
T TIGR03346 704 VDFR-NTVIIMTSNLG 718 (852)
T ss_pred EecC-CcEEEEeCCcc
Confidence 5553 68899999974
No 98
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.78 E-value=1.8e-08 Score=110.83 Aligned_cols=60 Identities=30% Similarity=0.245 Sum_probs=54.3
Q ss_pred cCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 446 AGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 446 ~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.|.|..|++||+.++|+.|.+.+.+..|+.+++++.+.+. |....++.+..|||++||..
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e 288 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESE 288 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHH
Confidence 5999999999999999999999999999999999999886 44557788889999999975
No 99
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.8e-08 Score=103.88 Aligned_cols=181 Identities=20% Similarity=0.245 Sum_probs=112.1
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccccccCCCCcccccccCceeecC---CCeEEec
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTASVAKEPETGEFCIEAGALMLAD---NGICCID 460 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad---~GIl~ID 460 (794)
|-.-.+|++||||||||.++|+++......+..... -....|-.+.+++| ++.+|. ..|+|||
T Consensus 203 ~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRD-----------AFaLAKEkaP~IIFID 271 (424)
T KOG0652|consen 203 RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD-----------AFALAKEKAPTIIFID 271 (424)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHH-----------HHHHhhccCCeEEEEe
Confidence 334469999999999999999999864432221100 00111222333333 333442 4699999
Q ss_pred ccccC-----------ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCcc
Q 003809 461 EFDKM-----------DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHE 520 (794)
Q Consensus 461 E~dk~-----------~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~ 520 (794)
|+|.+ +.+.|..+++.+.|-. |. .-+.++-+|||+|... ||.|+...+.
T Consensus 272 ElDAIGtKRfDSek~GDREVQRTMLELLNQLD------GF--ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP--- 340 (424)
T KOG0652|consen 272 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLD------GF--SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFP--- 340 (424)
T ss_pred chhhhccccccccccccHHHHHHHHHHHHhhc------CC--CCccceEEEeecccccccCHHHhhcccccccccCC---
Confidence 99843 2335777888886543 32 2356899999999763 6666655554
Q ss_pred cccCccccHHHHHHHHHHHhc----cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcC
Q 003809 521 DALAPAFTTAQLKRYIAYAKT----LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHL 596 (794)
Q Consensus 521 ~~~~~~~~~~~lr~yi~~ar~----~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~ 596 (794)
.+.+.-|..|..... +.|-++= .+| ++++-.++..|+.++.=-|--+|--+.
T Consensus 341 ------~Pne~aRarIlQIHsRKMnv~~DvNf----------eEL--------aRsTddFNGAQcKAVcVEAGMiALRr~ 396 (424)
T KOG0652|consen 341 ------HPNEEARARILQIHSRKMNVSDDVNF----------EEL--------ARSTDDFNGAQCKAVCVEAGMIALRRG 396 (424)
T ss_pred ------CCChHHHHHHHHHhhhhcCCCCCCCH----------HHH--------hhcccccCchhheeeehhhhHHHHhcc
Confidence 556666666654432 3333322 112 223334566777777777777888889
Q ss_pred CCCcCHHHHHHHHHHHh
Q 003809 597 ETQVHPRHVRVAVRLLK 613 (794)
Q Consensus 597 ~~~V~~~dv~eAi~L~~ 613 (794)
..+|+-+|..+++.-..
T Consensus 397 atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999886544
No 100
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.8e-07 Score=106.66 Aligned_cols=218 Identities=12% Similarity=0.097 Sum_probs=124.4
Q ss_pred hHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCccee----ec
Q 003809 346 FFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVY----TS 420 (794)
Q Consensus 346 i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~ 420 (794)
+|.+..-.-+.+|.||+.+.+.|.-++..+.-. | +||+||||||||++++.+++.+..... .+
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~------------ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSGKIG------------HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 344545555567999999999888877766421 4 799999999999999999998654211 11
Q ss_pred CCccCc----cccccccc-cCC--CCcc---cccccCcee---ecCCCeEEecccccCChhhHHHHHHHhhccEEEEeec
Q 003809 421 GKSSSA----AGLTASVA-KEP--ETGE---FCIEAGALM---LADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKA 487 (794)
Q Consensus 421 g~~ss~----~gLt~~v~-~d~--~~g~---~~~~~Gal~---lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~ka 487 (794)
+.-.+. .|....+. -+. ..|. ..+...+.. ....-|++|||+++|+...+++|+..||+-
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP------- 148 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP------- 148 (484)
T ss_pred CCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-------
Confidence 100000 00000000 000 0000 000000011 112349999999999999999999999752
Q ss_pred ceEEeecCceEEEEecCCCCCCCCCCCCccCcc-cccCccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCC
Q 003809 488 GIQATLNARTSILAAANPAGGRYDKSKPLKKHE-DALAPAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGD 565 (794)
Q Consensus 488 G~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~-~~~~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~ 565 (794)
+..+.+|.++|-.. +.. .++..+- ...-..++.+.++.|+.++-. -.-.++++|...|.+.
T Consensus 149 ------p~~viFILaTte~~-kI~--~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~-------- 211 (484)
T PRK14956 149 ------PAHIVFILATTEFH-KIP--ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK-------- 211 (484)
T ss_pred ------CCceEEEeecCChh-hcc--HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------
Confidence 22444444444211 000 0011000 011234677788888876643 4567899998888752
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
..-++|...+++.-+-+. ....|+.++|.+.+.+
T Consensus 212 --------S~Gd~RdAL~lLeq~i~~----~~~~it~~~V~~~lg~ 245 (484)
T PRK14956 212 --------GDGSVRDMLSFMEQAIVF----TDSKLTGVKIRKMIGY 245 (484)
T ss_pred --------cCChHHHHHHHHHHHHHh----CCCCcCHHHHHHHhCC
Confidence 124578888887544433 2346999999887644
No 101
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=2e-07 Score=104.24 Aligned_cols=209 Identities=15% Similarity=0.093 Sum_probs=117.3
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcce-ee---cCCccC---
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSV-YT---SGKSSS--- 425 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~-~~---~g~~ss--- 425 (794)
-+-+|+||+.+++.+.-++..|.-. | +||+||||+|||++++.+++.+.... +. ++.-.+
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~------------h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIH------------HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCC------------eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 3346889999999988887766422 5 58999999999999999998764211 00 110000
Q ss_pred -ccccccccc-cCCC--Cccc----ccccCc--eeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecC
Q 003809 426 -AAGLTASVA-KEPE--TGEF----CIEAGA--LMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 426 -~~gLt~~v~-~d~~--~g~~----~~~~Ga--l~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
..|....+. -++. .+.. .++.-. -..++..|++|||+++|+...+++|+..||.- +.
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-------------~~ 148 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PQ 148 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-------------CC
Confidence 000000000 0000 0000 000000 01234469999999999999999999999862 12
Q ss_pred ceE-EEEecCCCCCCCCCCCCccCc-ccccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCcc
Q 003809 496 RTS-ILAAANPAGGRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRV 572 (794)
Q Consensus 496 r~s-iiAaaNP~~Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~ 572 (794)
.+. |++++++.. .. .++..+ ....-++++.+.+..|+...- .....+++++.+.|....
T Consensus 149 ~~~fIl~t~~~~~--l~--~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s-------------- 210 (363)
T PRK14961 149 HIKFILATTDVEK--IP--KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHA-------------- 210 (363)
T ss_pred CeEEEEEcCChHh--hh--HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--------------
Confidence 333 334434321 10 011100 011123567788888877643 345568888888876521
Q ss_pred ccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 573 AYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 573 ~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
.-++|.+.+++.-+.+ . ....|+.++|.+++..
T Consensus 211 --~G~~R~al~~l~~~~~---~-~~~~It~~~v~~~l~~ 243 (363)
T PRK14961 211 --HGSMRDALNLLEHAIN---L-GKGNINIKNVTDMLGL 243 (363)
T ss_pred --CCCHHHHHHHHHHHHH---h-cCCCCCHHHHHHHHCC
Confidence 2346776666544332 2 4678999999887743
No 102
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.77 E-value=6.8e-08 Score=107.76 Aligned_cols=67 Identities=16% Similarity=0.351 Sum_probs=50.2
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCccccc-CCCccccc---ceeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKLT-HEGINLRG---DINVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~~-~~g~~~Rg---~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
+...+.-.|+||+.+|+++..++..+..+.. +. .+++ .-||||+||||||||++++++++.+...++
T Consensus 6 I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~--~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 6 IVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNE--ELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFI 76 (441)
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHhhhhhhcccc--ccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4555667799999999999999997643211 11 1111 148999999999999999999999876555
No 103
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.74 E-value=4.6e-08 Score=105.07 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHcCCchHHHhhhhcCCceechhhH--HHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHH
Q 003809 329 FTTEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDI--KRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFL 406 (794)
Q Consensus 329 ~t~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~v--K~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll 406 (794)
++..|..+ |-++..+-+++.-.-.-+.+||+.+ -.++|..++-..... .++|-||||||||+|+
T Consensus 114 l~~~e~R~---~~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ip-----------SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 114 LAAEEIRQ---MLQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIP-----------SMILWGPPGTGKTTLA 179 (554)
T ss_pred hhhHHHHH---HhccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCC-----------ceEEecCCCCchHHHH
Confidence 55554443 3445555555444444468888876 468888877554321 5899999999999999
Q ss_pred HHHHhhCCccee----ecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEE
Q 003809 407 KYAAGIVPRSVY----TSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTI 482 (794)
Q Consensus 407 ~~i~~~~p~~~~----~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~i 482 (794)
+.++..+....| .+...+...++-..+.+. ..+. ......-|+||||++++++.+|..++..+|.|.|
T Consensus 180 rlia~tsk~~SyrfvelSAt~a~t~dvR~ife~a--q~~~------~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I 251 (554)
T KOG2028|consen 180 RLIASTSKKHSYRFVELSATNAKTNDVRDIFEQA--QNEK------SLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI 251 (554)
T ss_pred HHHHhhcCCCceEEEEEeccccchHHHHHHHHHH--HHHH------hhhcceeEEEeHHhhhhhhhhhhcccceeccCce
Confidence 999998665433 122222211111111110 0111 1112346999999999999999999999999998
Q ss_pred EEe
Q 003809 483 SIT 485 (794)
Q Consensus 483 si~ 485 (794)
++.
T Consensus 252 ~lI 254 (554)
T KOG2028|consen 252 TLI 254 (554)
T ss_pred EEE
Confidence 876
No 104
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.72 E-value=4.2e-07 Score=100.05 Aligned_cols=206 Identities=13% Similarity=0.091 Sum_probs=114.3
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc------eeecCCccCcc
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS------VYTSGKSSSAA 427 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~------~~~~g~~ss~~ 427 (794)
-+.++.|++.++..+.-.+-.+... |+||+||||||||++++++++.+... ++.........
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~------------~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~ 80 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLP------------HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ 80 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCc------------eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc
Confidence 3445679999888877666554321 89999999999999999998875321 12111100000
Q ss_pred ccccccccCCCC-------------ccccc------ccCce-eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeec
Q 003809 428 GLTASVAKEPET-------------GEFCI------EAGAL-MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKA 487 (794)
Q Consensus 428 gLt~~v~~d~~~-------------g~~~~------~~Gal-~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~ka 487 (794)
. ...+..++.. ..-.+ ..+.. ..++..+++|||++.++...+..|+..|++..
T Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~------ 153 (337)
T PRK12402 81 G-KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS------ 153 (337)
T ss_pred c-hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc------
Confidence 0 0000000000 00000 00111 12456799999999999988999999987531
Q ss_pred ceEEeecCceEEE-EecCCCCCCCCCCCCccCcccc-cCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccC
Q 003809 488 GIQATLNARTSIL-AAANPAGGRYDKSKPLKKHEDA-LAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRG 564 (794)
Q Consensus 488 G~~~~l~ar~sii-AaaNP~~Gryd~~~~l~~~~~~-~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~ 564 (794)
..+.+| ++.+|.. . ..++..+-.. .-.+++.+.+..++... +.....+++++.+.|..+.
T Consensus 154 -------~~~~~Il~~~~~~~--~--~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~------ 216 (337)
T PRK12402 154 -------RTCRFIIATRQPSK--L--IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA------ 216 (337)
T ss_pred -------CCCeEEEEeCChhh--C--chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc------
Confidence 123333 4444421 1 1122211111 12346677778777653 4456679999999887631
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 565 DTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 565 ~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
+-++|.+...+. ..+ . ....|+.+||.+++.
T Consensus 217 ----------~gdlr~l~~~l~---~~~-~-~~~~It~~~v~~~~~ 247 (337)
T PRK12402 217 ----------GGDLRKAILTLQ---TAA-L-AAGEITMEAAYEALG 247 (337)
T ss_pred ----------CCCHHHHHHHHH---HHH-H-cCCCCCHHHHHHHhC
Confidence 234677655443 222 2 234799999988553
No 105
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.72 E-value=2.4e-07 Score=103.31 Aligned_cols=230 Identities=17% Similarity=0.170 Sum_probs=123.5
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC----------cceeecCC-cc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP----------RSVYTSGK-SS 424 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p----------~~~~~~g~-~s 424 (794)
+.+.|++.-.+.|.-.|...... ...-+++|+||||||||++++.+.+.+. ..+|.... ..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 45888887777666655421100 0011799999999999999999987542 12222211 11
Q ss_pred Ccccccc----ccc--c--CCCCcc---cccc--cCcee-ecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceE
Q 003809 425 SAAGLTA----SVA--K--EPETGE---FCIE--AGALM-LADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQ 490 (794)
Q Consensus 425 s~~gLt~----~v~--~--d~~~g~---~~~~--~Gal~-lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~ 490 (794)
+...+.. .+. . .+..+. -.+. -..+. .....|++|||+|.+....+..|...+.-.. .
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~--------~ 158 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARS--------N 158 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccc--------c
Confidence 1111111 110 0 000000 0000 00011 1123489999999995333334444332100 0
Q ss_pred Eee-cCceEEEEecCCCCC--CCCCCCCccC-cccccCccccHHHHHHHHHHHhc--cCC-cCCHHHHHHHHHHHHHhcc
Q 003809 491 ATL-NARTSILAAANPAGG--RYDKSKPLKK-HEDALAPAFTTAQLKRYIAYAKT--LKP-KLSLEARKLLVDSYVALRR 563 (794)
Q Consensus 491 ~~l-~ar~siiAaaNP~~G--ryd~~~~l~~-~~~~~~~~~~~~~lr~yi~~ar~--~~P-~ls~ea~~~L~~~Y~~lR~ 563 (794)
..+ +..+.+|+++|...- +.++...-+. .....-++++.+++..++...-. +.+ .+++++.+++.......
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~-- 236 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE-- 236 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh--
Confidence 111 246888888886531 1111110000 01122356788888888765432 233 47787777665532211
Q ss_pred CCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhh
Q 003809 564 GDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKT 614 (794)
Q Consensus 564 ~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~ 614 (794)
.-.+|....+++.|...|..+.+..|+.+||..|+..+..
T Consensus 237 -----------~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 237 -----------HGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK 276 (365)
T ss_pred -----------cCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 1346888899999888888888899999999999988743
No 106
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.72 E-value=2.3e-08 Score=111.53 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=51.0
Q ss_pred HHhhhhcCCceechhhHHHHHHHHHhCCcccc-cCCCccccc---ceeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 348 NKIVDSIGPTVFGHQDIKRAILLMLLGGVHKL-THEGINLRG---DINVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 348 ~~l~~si~p~I~G~e~vK~alll~L~gg~~~~-~~~g~~~Rg---~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
..+.+.+.-.|+||+.+|+++..++.++.... ...+ +|. .-|+||+||||+|||++++.+++.+...++
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~--~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi 79 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEE--LRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcc--cccccCCceEEEECCCCCCHHHHHHHHHHHhCChhe
Confidence 44566677789999999999999997743211 1111 111 148999999999999999999999776554
No 107
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=7.5e-08 Score=112.06 Aligned_cols=219 Identities=17% Similarity=0.143 Sum_probs=120.3
Q ss_pred ceechhhHHHHHHHHHhCCcccc-cCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKL-THEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTAS 432 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~-~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~ 432 (794)
+|.|.+.+|..+.-.+--..... ...+..+|-.-.+||+||||||||+|+++++..+...++.... .+...|-+..
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHH
Confidence 45566666665543332211100 0001123333379999999999999999999977665553211 1111222222
Q ss_pred cccCCCCcccccccCceeecCCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEeecCceEEEE
Q 003809 433 VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNARTSILA 501 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~siiA 501 (794)
.++..+.... ....+|+||||+|.+-+. ..+.++..|+... . ..++.+||
T Consensus 323 ~ir~~F~~A~--------~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~--~~~v~vi~ 383 (494)
T COG0464 323 NIRELFEKAR--------KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------K--AEGVLVIA 383 (494)
T ss_pred HHHHHHHHHH--------cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------c--cCceEEEe
Confidence 2222111111 123589999999965322 3344555543111 1 12477999
Q ss_pred ecCCCC---------CCCCCCCCccCcccccCccccHHHHHHHHHHHhccCCcCCH-HHHHHHHHHHHHhccCCCCCCCc
Q 003809 502 AANPAG---------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKTLKPKLSL-EARKLLVDSYVALRRGDTTPGSR 571 (794)
Q Consensus 502 aaNP~~---------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~~~P~ls~-ea~~~L~~~Y~~lR~~~~~~~~~ 571 (794)
|||... ||||....+. ++-..+-++.+-.+.+...+.+.. -..+.+.+
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~-------~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~--------------- 441 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVP-------LPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE--------------- 441 (494)
T ss_pred cCCCccccCHhhcccCccceEeecC-------CCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH---------------
Confidence 999773 5776655554 111122233333333333333222 22222222
Q ss_pred cccccCHHHHHHHHHHHHHHHHhcC-CCCcCHHHHHHHHHHHhhhc
Q 003809 572 VAYRMTVRQLEALIRLSEAIARSHL-ETQVHPRHVRVAVRLLKTSV 616 (794)
Q Consensus 572 ~~~~iT~R~LesliRlseA~Arl~~-~~~V~~~dv~eAi~L~~~s~ 616 (794)
.+-+.|..++..+++-|.-.|..+. ...|+..|+.+|+.-.+-|+
T Consensus 442 ~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 442 ITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCCC
Confidence 1223788999999999988888777 78899999999998855554
No 108
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.71 E-value=3.6e-07 Score=98.36 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=96.9
Q ss_pred CeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCC-----Ccc--Ccccc---cC
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSK-----PLK--KHEDA---LA 524 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~-----~l~--~~~~~---~~ 524 (794)
||+||||.+.++-+.-+.|..|||+-- -..++-|+|.-..+-..+. .++ ..|.. -.
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse~--------------aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t 358 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESEL--------------APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIIST 358 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhccc--------------CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEec
Confidence 899999999999999999999998653 2345566775432211111 111 00111 12
Q ss_pred ccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHH
Q 003809 525 PAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPR 603 (794)
Q Consensus 525 ~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~ 603 (794)
.+++.+.++..|..- +.-.-.++++|.++|... ...-|.|-...|+--|.-+|+.+.+..|..+
T Consensus 359 ~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~i---------------g~etSLRYa~qLL~pa~iiA~~rg~~~V~~~ 423 (450)
T COG1224 359 RPYSREEIREIIRIRAKEEDIELSDDALEYLTDI---------------GEETSLRYAVQLLTPASIIAKRRGSKRVEVE 423 (450)
T ss_pred CCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhh---------------chhhhHHHHHHhccHHHHHHHHhCCCeeehh
Confidence 457888888877532 345678999999888651 2234678888889999999999999999999
Q ss_pred HHHHHHHHHhhhcccc
Q 003809 604 HVRVAVRLLKTSVISV 619 (794)
Q Consensus 604 dv~eAi~L~~~s~~~~ 619 (794)
||++|..||-++..++
T Consensus 424 dVe~a~~lF~D~krSv 439 (450)
T COG1224 424 DVERAKELFLDVKRSV 439 (450)
T ss_pred HHHHHHHHHhhHHHHH
Confidence 9999999998766554
No 109
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=3.8e-07 Score=109.69 Aligned_cols=211 Identities=15% Similarity=0.107 Sum_probs=119.2
Q ss_pred HHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeE-EEeCCCcchHHHHHHHHHhhCCcceee----cCC
Q 003809 348 NKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINV-CIVGDPSCAKSQFLKYAAGIVPRSVYT----SGK 422 (794)
Q Consensus 348 ~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~ini-LLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~ 422 (794)
.+..-.-+-+|+||+.+++.|.-++..|.-. |. ||+||||||||++++.+++.+...... +|.
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~rl~------------HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQRLH------------HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCC------------eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 3333334446889999999888777766422 65 899999999999999999987542111 111
Q ss_pred ccC----ccccccc-cccCCC--Cc---------ccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEee
Q 003809 423 SSS----AAGLTAS-VAKEPE--TG---------EFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITK 486 (794)
Q Consensus 423 ~ss----~~gLt~~-v~~d~~--~g---------~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~k 486 (794)
-.+ ..|...- +.-+.. .+ .....+ ..+...|++|||+++|+...+++|+..||.-
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P---~~gk~KViIIDEAh~LT~eAqNALLKtLEEP------ 146 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP---SRGRFKVYLIDEVHMLSRSSFNALLKTLEEP------ 146 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhh---hcCCcEEEEEechHhcCHHHHHHHHHHHhcc------
Confidence 000 0000000 000000 01 000011 1124459999999999999999999999862
Q ss_pred cceEEeecCceEEEE-ecCCCCCCCCCCCCcc-CcccccCccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhcc
Q 003809 487 AGIQATLNARTSILA-AANPAGGRYDKSKPLK-KHEDALAPAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRR 563 (794)
Q Consensus 487 aG~~~~l~ar~siiA-aaNP~~Gryd~~~~l~-~~~~~~~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~ 563 (794)
+..+.+|. |+++.. .. ..+. +.....-..++.+.++.|+.++-. -...+++++.+.|..+
T Consensus 147 -------P~~vrFILaTTe~~k--Ll--~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~------ 209 (944)
T PRK14949 147 -------PEHVKFLLATTDPQK--LP--VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKA------ 209 (944)
T ss_pred -------CCCeEEEEECCCchh--ch--HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------
Confidence 22333333 334321 10 0111 001111245788889988877543 3567888888888652
Q ss_pred CCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 564 GDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 564 ~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
...++|...+++.-+.+. ....++.++|.+.+.
T Consensus 210 ----------S~Gd~R~ALnLLdQala~----~~~~It~~~V~~llG 242 (944)
T PRK14949 210 ----------ANGSMRDALSLTDQAIAF----GGGQVMLTQVQTMLG 242 (944)
T ss_pred ----------cCCCHHHHHHHHHHHHHh----cCCcccHHHHHHHhC
Confidence 123467777776433322 334577777666543
No 110
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.70 E-value=8.7e-08 Score=114.62 Aligned_cols=178 Identities=21% Similarity=0.235 Sum_probs=103.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec-CCc--cCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS-GKS--SSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~-g~~--ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~ 467 (794)
++||+||||||||+++++++..+...++.. +.. ....|..+..+++. +. .+ ......|+||||+|.+..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~----f~-~a---~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM----FE-QA---KKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHH----HH-HH---HhcCCcEEEehhHhhhhh
Confidence 499999999999999999999887665532 110 00111111111110 00 00 011346999999997732
Q ss_pred h--------------hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCcccccC
Q 003809 468 R--------------DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHEDALA 524 (794)
Q Consensus 468 ~--------------~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~~ 524 (794)
. ..+.|+..|+.- .-+.++.+|||||+.. ||||+...+.
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~-----------~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~------- 320 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG------- 320 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcc-----------cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcC-------
Confidence 1 223344444311 1134689999999863 6777665554
Q ss_pred ccccHHHHHHHHH-HHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcC
Q 003809 525 PAFTTAQLKRYIA-YAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVH 601 (794)
Q Consensus 525 ~~~~~~~lr~yi~-~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~ 601 (794)
.-+.+..++.+. +.+. +.+.+.-. .+ ...+.++|.++|.++++-|..+|.-..++.|+
T Consensus 321 -~Pd~~~R~~Il~~~~~~~~l~~~~d~~---~l---------------a~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~ 381 (644)
T PRK10733 321 -LPDVRGREQILKVHMRRVPLAPDIDAA---II---------------ARGTPGFSGADLANLVNEAALFAARGNKRVVS 381 (644)
T ss_pred -CCCHHHHHHHHHHHhhcCCCCCcCCHH---HH---------------HhhCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 111111111111 1122 12222111 11 22345789999999999999999888999999
Q ss_pred HHHHHHHHHHHh
Q 003809 602 PRHVRVAVRLLK 613 (794)
Q Consensus 602 ~~dv~eAi~L~~ 613 (794)
..|+++|+..+.
T Consensus 382 ~~d~~~a~~~v~ 393 (644)
T PRK10733 382 MVEFEKAKDKIM 393 (644)
T ss_pred HHHHHHHHHHHh
Confidence 999999987553
No 111
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.69 E-value=2.1e-07 Score=96.54 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=103.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc----ceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR----SVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~----~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
+++|+|+||||||++++++++.+.. .+|... ..+.... ..+ +. . +...++++|||++.++
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~-----~~~~~~~------~~~-~~--~--~~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL-----AELAQAD------PEV-LE--G--LEQADLVCLDDVEAIA 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH-----HHHHHhH------HHH-Hh--h--cccCCEEEEeChhhhc
Confidence 8999999999999999999987532 122211 0111000 000 00 0 1234699999999998
Q ss_pred hhh--HHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCC-CCccCc----ccccCccccHHHHHHHHHHH
Q 003809 467 IRD--QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKS-KPLKKH----EDALAPAFTTAQLKRYIAYA 539 (794)
Q Consensus 467 ~~~--~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~-~~l~~~----~~~~~~~~~~~~lr~yi~~a 539 (794)
... +..|..+++... ..+..+|.++|.....+... ..+..+ ....-++++.+.+..++...
T Consensus 104 ~~~~~~~~L~~~l~~~~------------~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 104 GQPEWQEALFHLYNRVR------------EAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CChHHHHHHHHHHHHHH------------HcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 754 778888775321 00124555666443222111 111100 01112345556666665432
Q ss_pred -hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 540 -KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 540 -r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
......+++++.+.|.. .|+-++|+|..++..+.+.|.-..+ .|+.+.|.+++
T Consensus 172 ~~~~~~~~~~~~l~~L~~----------------~~~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 172 AARRGLQLPDEVADYLLR----------------HGSRDMGSLMALLDALDRASLAAKR-KITIPFVKEVL 225 (226)
T ss_pred HHHcCCCCCHHHHHHHHH----------------hccCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHh
Confidence 23456788888887765 2567789999999998887766664 69999998875
No 112
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.69 E-value=2.2e-07 Score=101.31 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=114.0
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee----ecCCccCccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY----TSGKSSSAAGLTAS 432 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g~~ss~~gLt~~ 432 (794)
++.|++.++..+.-.+-.+... |++|+|+||||||++++.+++.+....+ ..-..+...+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~~------------~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~-- 83 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNMP------------HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGID-- 83 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCCC------------eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchH--
Confidence 3669999888877776554322 7999999999999999999887532111 000000000000
Q ss_pred cccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCC
Q 003809 433 VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDK 512 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~ 512 (794)
..++.. ..+ .....+..+...+++|||++.++...+..|+..|++.. ..+.+|.++|.... .
T Consensus 84 ~~~~~i-~~~-~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-------------~~~~lIl~~~~~~~-l-- 145 (319)
T PRK00440 84 VIRNKI-KEF-ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-------------QNTRFILSCNYSSK-I-- 145 (319)
T ss_pred HHHHHH-HHH-HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-------------CCCeEEEEeCCccc-c--
Confidence 000000 000 00111222345699999999999988899999886421 13445555553211 1
Q ss_pred CCCccCccc-ccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHH
Q 003809 513 SKPLKKHED-ALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEA 590 (794)
Q Consensus 513 ~~~l~~~~~-~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA 590 (794)
..++..+-. ..-++++.+.+..++... +.....+++++.+.|.+. .+-++|.+.+.+..+.+
T Consensus 146 ~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~----------------~~gd~r~~~~~l~~~~~ 209 (319)
T PRK00440 146 IDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV----------------SEGDMRKAINALQAAAA 209 (319)
T ss_pred chhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------------cCCCHHHHHHHHHHHHH
Confidence 111110100 112346677777777643 345567899988888652 11346777777764333
Q ss_pred HHHhcCCCCcCHHHHHHHH
Q 003809 591 IARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 591 ~Arl~~~~~V~~~dv~eAi 609 (794)
. ...||.+||..++
T Consensus 210 ~-----~~~it~~~v~~~~ 223 (319)
T PRK00440 210 T-----GKEVTEEAVYKIT 223 (319)
T ss_pred c-----CCCCCHHHHHHHh
Confidence 2 3679999998876
No 113
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=3.7e-07 Score=106.15 Aligned_cols=203 Identities=14% Similarity=0.044 Sum_probs=116.7
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcceee----cCC-------
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVYT----SGK------- 422 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~------- 422 (794)
+-+|+||+.+++.|.-++..+.-. | +||+||||||||++++.+++.+.-.... +|.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~------------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLH------------HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCC------------eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 346899999999999888776422 5 6999999999999999999976431110 111
Q ss_pred ----ccCccccccccccCCCCcccc----ccc--CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEe
Q 003809 423 ----SSSAAGLTASVAKEPETGEFC----IEA--GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQAT 492 (794)
Q Consensus 423 ----~ss~~gLt~~v~~d~~~g~~~----~~~--Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~ 492 (794)
......+.++. ..+... ++. -.-..+...|++|||+++|+....++|+..||+-
T Consensus 83 ~~g~~~d~~eidaas----~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep------------ 146 (509)
T PRK14958 83 DEGRFPDLFEVDAAS----RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP------------ 146 (509)
T ss_pred hcCCCceEEEEcccc----cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc------------
Confidence 00000011110 001000 000 0001123459999999999999999999999852
Q ss_pred ecCceEEE-EecCCCCCCCCCCCCccCcccc-cCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCC
Q 003809 493 LNARTSIL-AAANPAGGRYDKSKPLKKHEDA-LAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPG 569 (794)
Q Consensus 493 l~ar~sii-AaaNP~~Gryd~~~~l~~~~~~-~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~ 569 (794)
|..+.+| +|++|.. ...++..+-.. .-..++.+.+.+++...- .-.-.+++++...|.+..
T Consensus 147 -p~~~~fIlattd~~k----l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s----------- 210 (509)
T PRK14958 147 -PSHVKFILATTDHHK----LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA----------- 210 (509)
T ss_pred -CCCeEEEEEECChHh----chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----------
Confidence 2344444 4443321 00011100000 113466777777766553 345567888877776521
Q ss_pred CccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 570 SRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 570 ~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
..++|.+.+++.-+.+. +...|+.+||.+.+.
T Consensus 211 -----~GslR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 211 -----NGSVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred -----CCcHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 24578887777543322 356788888877543
No 114
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.2e-07 Score=108.80 Aligned_cols=206 Identities=13% Similarity=0.092 Sum_probs=118.6
Q ss_pred hcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee----cCCc-----
Q 003809 353 SIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT----SGKS----- 423 (794)
Q Consensus 353 si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~~----- 423 (794)
.-+.+|+||+.+++.|.-++..|... -.+||+||||+|||++|+.+++.+...... +|.-
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~-----------HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~ 80 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLH-----------HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKA 80 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCC-----------eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHH
Confidence 33447999999999998888877422 045999999999999999999876421100 1100
Q ss_pred ---cCcccc---ccccccCCCCccc----ccccCc--eeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEE
Q 003809 424 ---SSAAGL---TASVAKEPETGEF----CIEAGA--LMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQA 491 (794)
Q Consensus 424 ---ss~~gL---t~~v~~d~~~g~~----~~~~Ga--l~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~ 491 (794)
....++ .++. ..+.- .+.... -..+..-|++|||+++|+....++|+..||+-
T Consensus 81 I~~g~hpDviEIDAAs----~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP----------- 145 (702)
T PRK14960 81 VNEGRFIDLIEIDAAS----RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP----------- 145 (702)
T ss_pred HhcCCCCceEEecccc----cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-----------
Confidence 000011 1100 00100 000000 01123459999999999999999999999862
Q ss_pred eecCceEE-EEecCCCCCCCCCCCCccCccc-ccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCC
Q 003809 492 TLNARTSI-LAAANPAGGRYDKSKPLKKHED-ALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTP 568 (794)
Q Consensus 492 ~l~ar~si-iAaaNP~~Gryd~~~~l~~~~~-~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~ 568 (794)
+..+.+ ++|++|.. . ..++..+-. ..-..++.+.+.+++..+- .-...+++++...|.+.
T Consensus 146 --P~~v~FILaTtd~~k--I--p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~----------- 208 (702)
T PRK14960 146 --PEHVKFLFATTDPQK--L--PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES----------- 208 (702)
T ss_pred --CCCcEEEEEECChHh--h--hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----------
Confidence 122333 34444321 0 001110000 1112467778888876653 34567888888888652
Q ss_pred CCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 569 GSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 569 ~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
...++|.+.+++.-+ .+- +...|+.++|.+.+.
T Consensus 209 -----S~GdLRdALnLLDQa--Iay--g~g~IT~edV~~lLG 241 (702)
T PRK14960 209 -----AQGSLRDALSLTDQA--IAY--GQGAVHHQDVKEMLG 241 (702)
T ss_pred -----cCCCHHHHHHHHHHH--HHh--cCCCcCHHHHHHHhc
Confidence 124578888876533 332 466799999987654
No 115
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.67 E-value=5.1e-08 Score=101.97 Aligned_cols=213 Identities=16% Similarity=0.217 Sum_probs=143.1
Q ss_pred cccceeEEEeCCCcchHHHHHHHHHhh-------CCcceee-cC--CccCc-cccccccccCCCCcccccccCceeecCC
Q 003809 386 LRGDINVCIVGDPSCAKSQFLKYAAGI-------VPRSVYT-SG--KSSSA-AGLTASVAKEPETGEFCIEAGALMLADN 454 (794)
Q Consensus 386 ~Rg~iniLLvG~PGtGKS~Ll~~i~~~-------~p~~~~~-~g--~~ss~-~gLt~~v~~d~~~g~~~~~~Gal~lad~ 454 (794)
+|+...+||.||+|.|||.|++.+..+ ..+-+-+ +. .+-++ ..|++ .++..++|...-.+|.+-.|||
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg-hvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG-HVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh-hhccccccchhhhhhhhccCCC
Confidence 344458999999999999999999876 2222221 11 11111 12222 3444567777778999999999
Q ss_pred CeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC------CCCCCCCCCc------------
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA------GGRYDKSKPL------------ 516 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~------~Gryd~~~~l------------ 516 (794)
|.+|+||+..+..+.|..|+.++|.+++... |......++|.+||.+-.. .|+|....-.
T Consensus 284 gmlfldeigelgadeqamllkaieekrf~pf--gsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl 361 (531)
T COG4650 284 GMLFLDEIGELGADEQAMLLKAIEEKRFYPF--GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 (531)
T ss_pred ceEehHhhhhcCccHHHHHHHHHHhhccCCC--CCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeecccc
Confidence 9999999999999999999999999998765 6666777889999887654 3555433211
Q ss_pred cCcccccCccccHHHHHHHHHHHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHh
Q 003809 517 KKHEDALAPAFTTAQLKRYIAYAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARS 594 (794)
Q Consensus 517 ~~~~~~~~~~~~~~~lr~yi~~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl 594 (794)
..+.+.++|.++.+.-| +|+. -...++.||+..-..+. .. ....|.-+.|.|.+-+ ..+|-|
T Consensus 362 ~qr~ediepnldyeler----ha~~~g~~vrfntearra~l~fa----~s-----pqa~w~gnfrelsasv---trmatl 425 (531)
T COG4650 362 RQRQEDIEPNLDYELER----HASLTGDSVRFNTEARRAWLAFA----TS-----PQATWRGNFRELSASV---TRMATL 425 (531)
T ss_pred ccCccccCCCccHHHHH----HHHhhCceeeeehHHHHHHHHhc----cC-----cchhhcccHHHHhHHH---HHHHHH
Confidence 14556777877766554 2332 34466777765443321 11 2346777788875433 224556
Q ss_pred cCCCCcCHHHHHHHHHHHhhhcc
Q 003809 595 HLETQVHPRHVRVAVRLLKTSVI 617 (794)
Q Consensus 595 ~~~~~V~~~dv~eAi~L~~~s~~ 617 (794)
..+-.|+.+-|++-|.-++.+.-
T Consensus 426 ad~grit~~~ve~ei~rlr~~w~ 448 (531)
T COG4650 426 ADSGRITLDVVEDEINRLRYNWQ 448 (531)
T ss_pred hcCCceeHHHHHHHHHHHHHHhh
Confidence 67778999999998877777654
No 116
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.67 E-value=3.2e-07 Score=103.41 Aligned_cols=226 Identities=16% Similarity=0.165 Sum_probs=124.8
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc------ceeecCCc-cCc
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR------SVYTSGKS-SSA 426 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~------~~~~~g~~-ss~ 426 (794)
+-+.+.|.+.-...|...|..+... ...-+++|+|+||||||++++.+.+.+.. .++..... ++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 4445778777666666555333210 01127999999999999999999876522 22332221 111
Q ss_pred cccccc----ccc--CCCCcccccc------cCceeec-CCCeEEecccccCC----hhhHHHHHHHhhccEEEEeecce
Q 003809 427 AGLTAS----VAK--EPETGEFCIE------AGALMLA-DNGICCIDEFDKMD----IRDQVAIHEAMEQQTISITKAGI 489 (794)
Q Consensus 427 ~gLt~~----v~~--d~~~g~~~~~------~Gal~la-d~GIl~IDE~dk~~----~~~~~~L~eame~~~isi~kaG~ 489 (794)
..+... +.. .+..+ +... ...+... ..-|++|||+|.+. .+....|+.++++..
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~-------- 170 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSG-LSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP-------- 170 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCC-CCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC--------
Confidence 111111 100 00011 0000 0000000 12479999999876 223334444433210
Q ss_pred EEeecCceEEEEecCCCC--CCCCCCCCcc-CcccccCccccHHHHHHHHHHH-h-ccCC-cCCHHHHHHHHHHHHHhcc
Q 003809 490 QATLNARTSILAAANPAG--GRYDKSKPLK-KHEDALAPAFTTAQLKRYIAYA-K-TLKP-KLSLEARKLLVDSYVALRR 563 (794)
Q Consensus 490 ~~~l~ar~siiAaaNP~~--Gryd~~~~l~-~~~~~~~~~~~~~~lr~yi~~a-r-~~~P-~ls~ea~~~L~~~Y~~lR~ 563 (794)
..++++|+++|+.. .++++...-. ......-++++.+.++.++... + .+.+ .+++++.+.+.+.....
T Consensus 171 ----~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~-- 244 (394)
T PRK00411 171 ----GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTARE-- 244 (394)
T ss_pred ----CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHh--
Confidence 12688888888753 2222211100 0111223567777777766532 2 2333 68888888887755321
Q ss_pred CCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHh
Q 003809 564 GDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLK 613 (794)
Q Consensus 564 ~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~ 613 (794)
.-.+|.+..+++.|...|.-+.++.|+.+||.+|+.-+.
T Consensus 245 -----------~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 245 -----------HGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred -----------cCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 124688888999888889888999999999999998764
No 117
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.66 E-value=6.7e-08 Score=91.20 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=75.8
Q ss_pred chhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC---cceeecCCccCccccccccccC
Q 003809 360 GHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP---RSVYTSGKSSSAAGLTASVAKE 436 (794)
Q Consensus 360 G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p---~~~~~~g~~ss~~gLt~~v~~d 436 (794)
|++.+...+...+..... .+++++|+||+|||++++.+++.+. ..++.................
T Consensus 2 ~~~~~~~~i~~~~~~~~~------------~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~- 68 (151)
T cd00009 2 GQEEAIEALREALELPPP------------KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF- 68 (151)
T ss_pred chHHHHHHHHHHHhCCCC------------CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh-
Confidence 556666666666655221 1899999999999999999999863 222211110000000000000
Q ss_pred CCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 437 PETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 437 ~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.................++++|||++.+.+.....++..|+...... ..+.++.+|+++|+..
T Consensus 69 -~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 69 -GHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPL 131 (151)
T ss_pred -hhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCccc
Confidence 00000111122234467899999999998888888999887665432 2356789999999765
No 118
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.66 E-value=1.4e-07 Score=114.78 Aligned_cols=220 Identities=16% Similarity=0.153 Sum_probs=116.7
Q ss_pred HhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc----------cee
Q 003809 349 KIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR----------SVY 418 (794)
Q Consensus 349 ~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~----------~~~ 418 (794)
+....-...++|++..-.-++-.|...... |+||+||||||||.+++.+++.+-. .++
T Consensus 175 ~~r~~~l~~~igr~~ei~~~~~~L~~~~~~------------n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~ 242 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELERTIQVLCRRKKN------------NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIY 242 (731)
T ss_pred HHhcCCCCcccCcHHHHHHHHHHHhcCCCC------------ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEE
Confidence 333334446889987766666555444322 8999999999999999999987511 122
Q ss_pred ecCCccCccccccccccCCCCcccccccC-ce---eecCCCeEEecccccCCh---------hhHHHHHHHhhccEEEEe
Q 003809 419 TSGKSSSAAGLTASVAKEPETGEFCIEAG-AL---MLADNGICCIDEFDKMDI---------RDQVAIHEAMEQQTISIT 485 (794)
Q Consensus 419 ~~g~~ss~~gLt~~v~~d~~~g~~~~~~G-al---~lad~GIl~IDE~dk~~~---------~~~~~L~eame~~~isi~ 485 (794)
... ...+.+. ....|+|.-.-- .+ ....+.|+||||++.+.. +.++.|..+|+.|
T Consensus 243 ~~~----~~~l~a~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g----- 310 (731)
T TIGR02639 243 SLD----MGSLLAG---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG----- 310 (731)
T ss_pred Eec----HHHHhhh---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-----
Confidence 110 0011110 011122211100 01 012357999999997742 2355666776554
Q ss_pred ecceEEeecCceEEEEecCCCC-CCC-CCCCCccCccccc-CccccHHHHHHHHHHHh----c-cCCcCCHHHHHHHHHH
Q 003809 486 KAGIQATLNARTSILAAANPAG-GRY-DKSKPLKKHEDAL-APAFTTAQLKRYIAYAK----T-LKPKLSLEARKLLVDS 557 (794)
Q Consensus 486 kaG~~~~l~ar~siiAaaNP~~-Gry-d~~~~l~~~~~~~-~~~~~~~~lr~yi~~ar----~-~~P~ls~ea~~~L~~~ 557 (794)
.+.+|+|||+.. ..| ..+..+..+-..+ -+..+.+.....+...+ . ....++++|...++..
T Consensus 311 ----------~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~l 380 (731)
T TIGR02639 311 ----------KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVEL 380 (731)
T ss_pred ----------CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHh
Confidence 356788998743 111 1111111110111 12234444333333222 2 3456899888877664
Q ss_pred HHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcC----CCCcCHHHHHHHHHHH
Q 003809 558 YVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHL----ETQVHPRHVRVAVRLL 612 (794)
Q Consensus 558 Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~----~~~V~~~dv~eAi~L~ 612 (794)
-... -..+.-|+....+++-|-|.++++. ...|+.+|+..++.-+
T Consensus 381 s~ry----------i~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 381 SARY----------INDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred hhcc----------cccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 2211 0112345666677776666666643 2359999999988764
No 119
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.1e-07 Score=109.66 Aligned_cols=216 Identities=18% Similarity=0.183 Sum_probs=143.5
Q ss_pred eEEEeC----CCcchHHHHHHHHHhhCCc--------------------ceeecCCccCccccccccccCCCCc------
Q 003809 391 NVCIVG----DPSCAKSQFLKYAAGIVPR--------------------SVYTSGKSSSAAGLTASVAKEPETG------ 440 (794)
Q Consensus 391 niLLvG----~PGtGKS~Ll~~i~~~~p~--------------------~~~~~g~~ss~~gLt~~v~~d~~~g------ 440 (794)
++.+.| .+|.+++...+.+....+. .-+..........|.+.+..++..|
T Consensus 133 ~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~ 212 (647)
T COG1067 133 QIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTG 212 (647)
T ss_pred hhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCC
Confidence 455555 7888888877665554111 1222333445566788877777655
Q ss_pred ccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEe-----ecc---eEEeecCceEEEEecCCCC--CCC
Q 003809 441 EFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISIT-----KAG---IQATLNARTSILAAANPAG--GRY 510 (794)
Q Consensus 441 ~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~-----kaG---~~~~l~ar~siiAaaNP~~--Gry 510 (794)
.-.++||++-.||+|||||||+..+....+..++.+|.++...+. ..| ..-..|+++.++++.|+.. ..+
T Consensus 213 ~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~ 292 (647)
T COG1067 213 HIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLH 292 (647)
T ss_pred cccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhc
Confidence 456789999999999999999999998899999999987754443 112 1234678899999999763 111
Q ss_pred CCCCCcc--C-cccccCc--cccHHHHHHHH----HHHh-c-cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHH
Q 003809 511 DKSKPLK--K-HEDALAP--AFTTAQLKRYI----AYAK-T-LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVR 579 (794)
Q Consensus 511 d~~~~l~--~-~~~~~~~--~~~~~~lr~yi----~~ar-~-~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R 579 (794)
.....+. . -....+. +.+.+.-.++. .... . --|.++..|.+.|..+-.+.- ..+..+.+.+|
T Consensus 293 ~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~A------g~~~~Ltl~~r 366 (647)
T COG1067 293 EPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRA------GDQNKLTLRLR 366 (647)
T ss_pred ccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc------cccceeccCHH
Confidence 1111110 0 0011111 12333333333 3222 2 458999999998877544331 13457889999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 580 QLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 580 ~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
.|-.|+|.|--+|..+.++.++.+||++|++.-
T Consensus 367 dl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~ 399 (647)
T COG1067 367 DLGNLVREAGDIAVSEGRKLITAEDVEEALQKR 399 (647)
T ss_pred HHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhh
Confidence 999999999999999999999999999999773
No 120
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2e-08 Score=108.65 Aligned_cols=203 Identities=20% Similarity=0.230 Sum_probs=113.7
Q ss_pred ceechhhHHHHHHHHHhCC--cccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGG--VHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg--~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
+|.|.+.+|.++--...=. .+..-..|--+|-..+|||+||||||||++|+++++.+....... +...||....
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv----~~s~lt~KWf 168 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV----SVSNLTSKWF 168 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee----eccccchhhH
Confidence 6888888887664332211 111112444566677899999999999999999999876544321 1122222111
Q ss_pred cCCCCcccccccCceeec---CCCeEEecccccCChhhHHHHHHHhh---ccEEEEeecceEEeecCceEEEEecCCCCC
Q 003809 435 KEPETGEFCIEAGALMLA---DNGICCIDEFDKMDIRDQVAIHEAME---QQTISITKAGIQATLNARTSILAAANPAGG 508 (794)
Q Consensus 435 ~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~~~~~~L~eame---~~~isi~kaG~~~~l~ar~siiAaaNP~~G 508 (794)
.+ ++ .+-.-.+.+| ...|+||||+|.|--.-+..=||+|. .+-.+. =.|....-++++.|+||+|.+.
T Consensus 169 gE---~e-Klv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~-WDGl~s~~~~rVlVlgATNRP~- 242 (386)
T KOG0737|consen 169 GE---AQ-KLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMAL-WDGLSSKDSERVLVLGATNRPF- 242 (386)
T ss_pred HH---HH-HHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHH-hccccCCCCceEEEEeCCCCCc-
Confidence 00 00 0111112222 24799999999654333444566552 111111 1255555567899999999764
Q ss_pred CCCCCCCccCcccccCccccHHHHHHHHHHHhccCCcCCH-HHHHHHHHHHHHhccCCCC----CCCccccccCHHHHHH
Q 003809 509 RYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKTLKPKLSL-EARKLLVDSYVALRRGDTT----PGSRVAYRMTVRQLEA 583 (794)
Q Consensus 509 ryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~~~P~ls~-ea~~~L~~~Y~~lR~~~~~----~~~~~~~~iT~R~Les 583 (794)
.++...+||.. ++++..++. +-+..|...+...-+.... ..+..+-++|.++|..
T Consensus 243 -----------------DlDeAiiRR~p---~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLke 302 (386)
T KOG0737|consen 243 -----------------DLDEAIIRRLP---RRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKE 302 (386)
T ss_pred -----------------cHHHHHHHhCc---ceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHH
Confidence 24556666654 344444433 3445565555443322211 1244566789999988
Q ss_pred HHHHHH
Q 003809 584 LIRLSE 589 (794)
Q Consensus 584 liRlse 589 (794)
+.|.|.
T Consensus 303 lC~~Aa 308 (386)
T KOG0737|consen 303 LCRLAA 308 (386)
T ss_pred HHHHHh
Confidence 888764
No 121
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=3.6e-07 Score=108.51 Aligned_cols=225 Identities=14% Similarity=0.151 Sum_probs=127.3
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeE-EEeCCCcchHHHHHHHHHhhCC-----------cceeecCC-c
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINV-CIVGDPSCAKSQFLKYAAGIVP-----------RSVYTSGK-S 423 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~ini-LLvG~PGtGKS~Ll~~i~~~~p-----------~~~~~~g~-~ 423 (794)
.+.|.+.-...|...|...... .|.-++ +|+|+||||||.+++++.+.+. ..+|..+. .
T Consensus 756 ~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 5667776666555554432210 011145 5999999999999999976541 11233221 1
Q ss_pred cCccccccccc-----cCCCCccc---cccc--CceeecCC--CeEEecccccCChhhHHHHHHHhhccEEEEeecceEE
Q 003809 424 SSAAGLTASVA-----KEPETGEF---CIEA--GALMLADN--GICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQA 491 (794)
Q Consensus 424 ss~~gLt~~v~-----~d~~~g~~---~~~~--Gal~lad~--GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~ 491 (794)
.+...+...+. ..+..|.. .++. ..+....+ -|++|||||.+....+..|+..++--.
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~---------- 897 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT---------- 897 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh----------
Confidence 11111111111 01111100 0000 00001112 389999999998877888888876321
Q ss_pred eecCceEEEEecCCCC--CCCCCCCCcc-CcccccCccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCCCC
Q 003809 492 TLNARTSILAAANPAG--GRYDKSKPLK-KHEDALAPAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGDTT 567 (794)
Q Consensus 492 ~l~ar~siiAaaNP~~--Gryd~~~~l~-~~~~~~~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~~~ 567 (794)
...+++.|||.+|+.. .+.++...-+ .......++++.++|+..+..... ....++++|.+++.+.-.
T Consensus 898 ~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-------- 969 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-------- 969 (1164)
T ss_pred ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh--------
Confidence 1235789999999753 2332221111 112234477888888887765433 345789999988876221
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhh
Q 003809 568 PGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTS 615 (794)
Q Consensus 568 ~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s 615 (794)
.....+|....++|.|-..+ ....|+++||.+|...+..+
T Consensus 970 -----q~SGDARKALDILRrAgEik---egskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 970 -----NVSGDIRKALQICRKAFENK---RGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred -----hcCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHhh
Confidence 11234688888888886653 45689999999999765433
No 122
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=4.4e-07 Score=107.31 Aligned_cols=212 Identities=14% Similarity=0.132 Sum_probs=118.4
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcceeecCCccC--------
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSS-------- 425 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss-------- 425 (794)
+-+|+||+.+++.|.-++-+|... | +||+|++|||||++++.+++.+.......+....
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~------------HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLH------------HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 346889999999998888776422 4 4899999999999999999976431110000000
Q ss_pred ccc-cccccccCCC--Ccc----ccccc--CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCc
Q 003809 426 AAG-LTASVAKEPE--TGE----FCIEA--GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNAR 496 (794)
Q Consensus 426 ~~g-Lt~~v~~d~~--~g~----~~~~~--Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar 496 (794)
..| ....+.-+.. .+. ..++. .....+...|++|||+|+|+...+++|+..||+- +.+
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~ 149 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPH 149 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-------------CCC
Confidence 000 0000000100 000 00110 0001224569999999999999999999999863 223
Q ss_pred eEEEEecCCCCCCCCCCCCccCc-ccccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCcccc
Q 003809 497 TSILAAANPAGGRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAY 574 (794)
Q Consensus 497 ~siiAaaNP~~Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~ 574 (794)
+.||.+||-.. +. ..++..+ ....-..++.+.+..++...- .-...+++++...|.+. .
T Consensus 150 v~FILaTtd~~-KI--p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~----------------A 210 (830)
T PRK07003 150 VKFILATTDPQ-KI--PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA----------------A 210 (830)
T ss_pred eEEEEEECChh-hc--cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------------c
Confidence 44444444221 11 0111100 011113466777777776543 34567888888888652 1
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhh
Q 003809 575 RMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKT 614 (794)
Q Consensus 575 ~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~ 614 (794)
.-++|...+++.-+.+. ....|+.++|...+.++..
T Consensus 211 ~GsmRdALsLLdQAia~----~~~~It~~~V~~~LG~~d~ 246 (830)
T PRK07003 211 QGSMRDALSLTDQAIAY----SANEVTETAVSGMLGALDQ 246 (830)
T ss_pred CCCHHHHHHHHHHHHHh----ccCCcCHHHHHHHhCCCCH
Confidence 23468877776544433 3456888888876655433
No 123
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.64 E-value=2e-07 Score=105.11 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=83.9
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcce-------eecCCccCccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSV-------YTSGKSSSAAG 428 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~-------~~~g~~ss~~g 428 (794)
-++++.+..-..++.+|..+. |++|+|+||||||++++.++..+.... .+.+...+..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--------------~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeD 240 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--------------NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYED 240 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--------------CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHH
Confidence 345666667777777777665 899999999999999999988764210 11111111112
Q ss_pred cccccccCCCCcccccccCcee----ec-----CCCeEEecccccCChhh-HHHHHHHhhcc------EEEEe--e-cce
Q 003809 429 LTASVAKEPETGEFCIEAGALM----LA-----DNGICCIDEFDKMDIRD-QVAIHEAMEQQ------TISIT--K-AGI 489 (794)
Q Consensus 429 Lt~~v~~d~~~g~~~~~~Gal~----la-----d~GIl~IDE~dk~~~~~-~~~L~eame~~------~isi~--k-aG~ 489 (794)
+.... .+....+...+|.+. .| .+.+++|||+|+.+.+. -..++.+||.+ .+.+. . .+.
T Consensus 241 FI~G~--rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e 318 (459)
T PRK11331 241 FIQGY--RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEE 318 (459)
T ss_pred Hhccc--CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccc
Confidence 11111 012233455566431 11 35699999999999664 55678888853 12221 1 123
Q ss_pred EEeecCceEEEEecCCCC
Q 003809 490 QATLNARTSILAAANPAG 507 (794)
Q Consensus 490 ~~~l~ar~siiAaaNP~~ 507 (794)
...+|.++.||||+|...
T Consensus 319 ~f~iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 319 RFYVPENVYIIGLMNTAD 336 (459)
T ss_pred cccCCCCeEEEEecCccc
Confidence 457889999999999764
No 124
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.64 E-value=3e-07 Score=102.56 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=124.3
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChh-
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR- 468 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~- 468 (794)
-|++++||||||||+++..+...+ ...+|...+.+.|...+.. -..|.+ +.--+++|||+..++..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~---a~~sG~f~T~a~Lf~~L~~--------~~lg~v--~~~DlLI~DEvgylp~~~ 276 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYV---ILISGGTITVAKLFYNIST--------RQIGLV--GRWDVVAFDEVATLKFAK 276 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHH---HHHcCCcCcHHHHHHHHHH--------HHHhhh--ccCCEEEEEcCCCCcCCc
Confidence 399999999999999999876541 2234554555555543321 122332 23358999999975443
Q ss_pred ---hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCcccccCcc-ccHHHHHHHHHHHhc-cC
Q 003809 469 ---DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHEDALAPA-FTTAQLKRYIAYAKT-LK 543 (794)
Q Consensus 469 ---~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~~~~-~~~~~lr~yi~~ar~-~~ 543 (794)
....|...|++|.++..+ ....-++.+.+++-.|..--...+...+. ..+.+. -+.++|-|+-.|.-- --
T Consensus 277 ~~~~v~imK~yMesg~fsRG~--~~~~a~as~vfvGNi~~~v~~~~~~~~Lf---~~lP~~~~DsAflDRiH~yiPGWei 351 (449)
T TIGR02688 277 PKELIGILKNYMESGSFTRGD--ETKSSDASFVFLGNVPLTSEHMVKNSDLF---SPLPEFMRDSAFLDRIHGYLPGWEI 351 (449)
T ss_pred hHHHHHHHHHHHHhCceeccc--eeeeeeeEEEEEcccCCcchhhcCccccc---ccCChhhhhhHHHHhhhccCCCCcC
Confidence 335677789999988753 33334444555554442211121222221 001111 144556665555532 23
Q ss_pred CcCCHHH--------HHHHHHHHHHhccCCCCCC----CccccccCHHHHHHHHHHHHHHHHh-cCCCCcCHHHHHHHHH
Q 003809 544 PKLSLEA--------RKLLVDSYVALRRGDTTPG----SRVAYRMTVRQLEALIRLSEAIARS-HLETQVHPRHVRVAVR 610 (794)
Q Consensus 544 P~ls~ea--------~~~L~~~Y~~lR~~~~~~~----~~~~~~iT~R~LesliRlseA~Arl-~~~~~V~~~dv~eAi~ 610 (794)
|+++++. .+++.++..+||+.+-... -.-+-.++.|.-.++-|..-+..|| .-.-.++.++++++++
T Consensus 352 pk~~~e~~t~~yGl~~DylsE~l~~lR~~~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~ 431 (449)
T TIGR02688 352 PKIRKEMFSNGYGFVVDYFAEALRELREREYADIVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLE 431 (449)
T ss_pred ccCCHHHcccCCcchHHHHHHHHHHHHhhHHHHhhhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 6666654 5678888888887533111 1122457999999999999999988 5556799999998776
Q ss_pred HHhh
Q 003809 611 LLKT 614 (794)
Q Consensus 611 L~~~ 614 (794)
+--+
T Consensus 432 ~Ale 435 (449)
T TIGR02688 432 PALE 435 (449)
T ss_pred HHHH
Confidence 6433
No 125
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.63 E-value=1.3e-07 Score=116.26 Aligned_cols=148 Identities=13% Similarity=0.138 Sum_probs=94.5
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCC----cccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC---ccee-
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGG----VHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP---RSVY- 418 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg----~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p---~~~~- 418 (794)
+..|.+.+.-.|+||+.+.+.+.-++... .....+-| ++||+||||+|||.+++.+++.+- ..+.
T Consensus 500 l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~-------~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~ 572 (821)
T CHL00095 500 LLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIA-------SFLFSGPTGVGKTELTKALASYFFGSEDAMIR 572 (821)
T ss_pred HHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCce-------EEEEECCCCCcHHHHHHHHHHHhcCCccceEE
Confidence 44677888899999999988887766422 11111222 589999999999999999999752 1111
Q ss_pred ecC-Ccc---Ccccccccc---ccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEE
Q 003809 419 TSG-KSS---SAAGLTASV---AKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQA 491 (794)
Q Consensus 419 ~~g-~~s---s~~gLt~~v---~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~ 491 (794)
... ... +...|.++. +.-...|.. ..++......|++|||++++++..++.|+++|++|+++... |...
T Consensus 573 ~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l---~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~-g~~v 648 (821)
T CHL00095 573 LDMSEYMEKHTVSKLIGSPPGYVGYNEGGQL---TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK-GRTI 648 (821)
T ss_pred EEchhccccccHHHhcCCCCcccCcCccchH---HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC-CcEE
Confidence 111 000 000111110 000000100 01122233479999999999999999999999999998764 5555
Q ss_pred eecCceEEEEecCCC
Q 003809 492 TLNARTSILAAANPA 506 (794)
Q Consensus 492 ~l~ar~siiAaaNP~ 506 (794)
.+. ++.||.|+|..
T Consensus 649 ~~~-~~i~I~Tsn~g 662 (821)
T CHL00095 649 DFK-NTLIIMTSNLG 662 (821)
T ss_pred ecC-ceEEEEeCCcc
Confidence 554 79999999964
No 126
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.9e-07 Score=111.08 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=98.8
Q ss_pred hHHHhhhhcCCceechhhHHHHHHHHH----hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc---cee
Q 003809 346 FFNKIVDSIGPTVFGHQDIKRAILLML----LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR---SVY 418 (794)
Q Consensus 346 i~~~l~~si~p~I~G~e~vK~alll~L----~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~---~~~ 418 (794)
....+-+.+.-.|+||+.+..++.-++ +|-...+.|-| ..||+||+|+|||.|+++++..+-. ...
T Consensus 481 kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPig-------sFlF~GPTGVGKTELAkaLA~~Lfg~e~ali 553 (786)
T COG0542 481 KLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIG-------SFLFLGPTGVGKTELAKALAEALFGDEQALI 553 (786)
T ss_pred HHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCce-------EEEeeCCCcccHHHHHHHHHHHhcCCCccce
Confidence 344567778889999998766665554 45554444555 7899999999999999999998642 111
Q ss_pred e------------cCCccCccccccccccCCCCcccccccCceeec----CCCeEEecccccCChhhHHHHHHHhhccEE
Q 003809 419 T------------SGKSSSAAGLTASVAKEPETGEFCIEAGALMLA----DNGICCIDEFDKMDIRDQVAIHEAMEQQTI 482 (794)
Q Consensus 419 ~------------~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la----d~GIl~IDE~dk~~~~~~~~L~eame~~~i 482 (794)
. +.-..+++|..+. + +.|.|.-| ...|+++|||+|..|+..+.|+++|++|++
T Consensus 554 R~DMSEy~EkHsVSrLIGaPPGYVGy---e--------eGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrL 622 (786)
T COG0542 554 RIDMSEYMEKHSVSRLIGAPPGYVGY---E--------EGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRL 622 (786)
T ss_pred eechHHHHHHHHHHHHhCCCCCCcee---c--------cccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCee
Confidence 1 1112233333221 1 12333222 246999999999999999999999999999
Q ss_pred EEeecceEEeecCceEEEEecCCC
Q 003809 483 SITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 483 si~kaG~~~~l~ar~siiAaaNP~ 506 (794)
+-.+ |....+. ++.||.|+|--
T Consensus 623 TD~~-Gr~VdFr-NtiIImTSN~G 644 (786)
T COG0542 623 TDGQ-GRTVDFR-NTIIIMTSNAG 644 (786)
T ss_pred ecCC-CCEEecc-eeEEEEecccc
Confidence 9875 5555554 69999999965
No 127
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=5.1e-07 Score=104.50 Aligned_cols=217 Identities=12% Similarity=0.127 Sum_probs=123.6
Q ss_pred HhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeec-CCccCcc
Q 003809 349 KIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTS-GKSSSAA 427 (794)
Q Consensus 349 ~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~-g~~ss~~ 427 (794)
+..-.-+-+++||+.+.+.|.-++..|... =++||+||||||||++++.+++.+....... +......
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~ri~-----------~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILNDRLA-----------GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcCCCC-----------ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 333334446889999999887777666421 0699999999999999999999865321110 0000000
Q ss_pred cc-------cc----ccc-cCC--CCccccc-------ccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEee
Q 003809 428 GL-------TA----SVA-KEP--ETGEFCI-------EAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITK 486 (794)
Q Consensus 428 gL-------t~----~v~-~d~--~~g~~~~-------~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~k 486 (794)
+. .. -+. -+. .++.-.+ ...+ +.++..|++|||++.++...+++|+..||+-
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P-~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep------ 155 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP-LQGKHKIFIIDEVHMLSKGAFNALLKTLEEP------ 155 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc-ccCCcEEEEEEChhhcCHHHHHHHHHHHhhc------
Confidence 00 00 000 000 0110000 0011 2346679999999999999999999999852
Q ss_pred cceEEeecCceEEEEecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccC
Q 003809 487 AGIQATLNARTSILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRG 564 (794)
Q Consensus 487 aG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~ 564 (794)
+..+.+|.+++.... . ..++..+-..+ -..++.+.+..++...- .-...++++|...|...
T Consensus 156 -------p~~~vfI~aTte~~k-I--~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~------- 218 (507)
T PRK06645 156 -------PPHIIFIFATTEVQK-I--PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK------- 218 (507)
T ss_pred -------CCCEEEEEEeCChHH-h--hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------
Confidence 334455444442210 0 01111111111 13467788888876554 35667888888887652
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 565 DTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 565 ~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
...++|.+.+++.-+.+++.-. ...|+.+||.+.+.
T Consensus 219 ---------s~GslR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 219 ---------SEGSARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred ---------cCCCHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 1245788888876655554311 23688888887653
No 128
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=6.1e-07 Score=101.62 Aligned_cols=218 Identities=12% Similarity=0.080 Sum_probs=120.9
Q ss_pred HHhhhhcCC----ceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcce-eecC
Q 003809 348 NKIVDSIGP----TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSV-YTSG 421 (794)
Q Consensus 348 ~~l~~si~p----~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~-~~~g 421 (794)
..|++..-| +|+||+.+++.|.-++-.|.-. | +||+||||+|||++++.+++.+.-.. +...
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~------------ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~ 71 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVG------------HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDA 71 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcc------------eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcc
Confidence 344444444 7899999999887777766422 5 89999999999999999998763211 0000
Q ss_pred ----CccCccccc------------cccccCC--CCc-ccc---ccc--CceeecCCCeEEecccccCChhhHHHHHHHh
Q 003809 422 ----KSSSAAGLT------------ASVAKEP--ETG-EFC---IEA--GALMLADNGICCIDEFDKMDIRDQVAIHEAM 477 (794)
Q Consensus 422 ----~~ss~~gLt------------~~v~~d~--~~g-~~~---~~~--Gal~lad~GIl~IDE~dk~~~~~~~~L~eam 477 (794)
....+.|-- ..+.-+. ..+ +.. .+. -.-+.++.-|++|||+++|+...++.|+..|
T Consensus 72 ~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~L 151 (397)
T PRK14955 72 DYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTL 151 (397)
T ss_pred cccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHH
Confidence 000010100 0000000 000 000 000 0013356679999999999999999999999
Q ss_pred hccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHHh-ccCCcCCHHHHHHHH
Q 003809 478 EQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYAK-TLKPKLSLEARKLLV 555 (794)
Q Consensus 478 e~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~ 555 (794)
|+- +..+.+|.+++... .-..++..+-..+ -.+++.+.++.|+...- .....+++++.+.|.
T Consensus 152 Eep-------------~~~t~~Il~t~~~~---kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 152 EEP-------------PPHAIFIFATTELH---KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred hcC-------------CCCeEEEEEeCChH---HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 752 12333333333111 0111111111111 13456777787776543 345668888888886
Q ss_pred HHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHh-cCCCCcCHHHHHHHH
Q 003809 556 DSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARS-HLETQVHPRHVRVAV 609 (794)
Q Consensus 556 ~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl-~~~~~V~~~dv~eAi 609 (794)
..- +.++|.+.+.+.-..+.+.- .....|+.++|.+++
T Consensus 216 ~~s----------------~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKA----------------QGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHc----------------CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 521 23467776666544444421 224579999998766
No 129
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=8.8e-07 Score=103.26 Aligned_cols=172 Identities=13% Similarity=0.062 Sum_probs=96.6
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcceee----cCCc------
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVYT----SGKS------ 423 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~~------ 423 (794)
+.+|+||+.+++.|.-++..|... | +||+||||+|||++++.+++.+...... +|.-
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl~------------ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKVH------------HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 336889999999888877765421 4 7899999999999999999865421100 1000
Q ss_pred --cCccccccccccCCCCcc----ccccc--CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecC
Q 003809 424 --SSAAGLTASVAKEPETGE----FCIEA--GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 424 --ss~~gLt~~v~~d~~~g~----~~~~~--Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
.+..++.. +......|. ..++. -.-..++..|++|||+++|+...+++|+..||+. |.
T Consensus 83 ~~~~~~dlie-idaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p~ 148 (546)
T PRK14957 83 NNNSFIDLIE-IDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------PE 148 (546)
T ss_pred hcCCCCceEE-eecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-------------CC
Confidence 00001000 000000000 00000 0012235569999999999999999999999873 12
Q ss_pred ce-EEEEecCCCCCCCCCCCCccCccc-ccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHH
Q 003809 496 RT-SILAAANPAGGRYDKSKPLKKHED-ALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVD 556 (794)
Q Consensus 496 r~-siiAaaNP~~Gryd~~~~l~~~~~-~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~ 556 (794)
.+ .|++|+++.. - ..++..+-. .--..++.+.+..++..+- .....+++++...|..
T Consensus 149 ~v~fIL~Ttd~~k--i--l~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 149 YVKFILATTDYHK--I--PVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred CceEEEEECChhh--h--hhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 23 3444544321 0 001110000 1113467777887776643 3456788888888866
No 130
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2.6e-07 Score=107.97 Aligned_cols=207 Identities=13% Similarity=0.099 Sum_probs=111.9
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCccee---------ecC--
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVY---------TSG-- 421 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~---------~~g-- 421 (794)
-+.+|+||+.+++.|.-++..|... | +||+|++|+|||++++.+++.+.-..- .+|
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLp------------HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLH------------HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCc------------eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 3446999999999998888777532 5 499999999999999999997643100 011
Q ss_pred ---------CccCccccccccccCCCCcc----cccccCce--eecCCCeEEecccccCChhhHHHHHHHhhccEEEEee
Q 003809 422 ---------KSSSAAGLTASVAKEPETGE----FCIEAGAL--MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITK 486 (794)
Q Consensus 422 ---------~~ss~~gLt~~v~~d~~~g~----~~~~~Gal--~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~k 486 (794)
.......+.+.. ..+. ..++.-.. ......|++|||+|+|+....++|+..||+-
T Consensus 82 ~sC~~I~aG~hpDviEIdAas----~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP------ 151 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAAS----NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP------ 151 (700)
T ss_pred HHHHHHHcCCCCcceEecccc----cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC------
Confidence 000000111100 0000 00000000 1123359999999999999999999999862
Q ss_pred cceEEeecCceEEEEecC-CCCCCCCCCCCccCcc-cccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhcc
Q 003809 487 AGIQATLNARTSILAAAN-PAGGRYDKSKPLKKHE-DALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRR 563 (794)
Q Consensus 487 aG~~~~l~ar~siiAaaN-P~~Gryd~~~~l~~~~-~~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~ 563 (794)
+.++.||.+|| |.. .-. ++..+- ...-..++.+.+..++.+.- .-...+++++.+.|...
T Consensus 152 -------P~~v~FILaTtep~k--Llp--TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~------ 214 (700)
T PRK12323 152 -------PEHVKFILATTDPQK--IPV--TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA------ 214 (700)
T ss_pred -------CCCceEEEEeCChHh--hhh--HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------
Confidence 23444444444 321 100 000000 00012345566666655432 23445666666665431
Q ss_pred CCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHh
Q 003809 564 GDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLK 613 (794)
Q Consensus 564 ~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~ 613 (794)
..-++|...+++.-+.+ .....|+.++|.+.+.+..
T Consensus 215 ----------A~Gs~RdALsLLdQaia----~~~~~It~~~V~~~LG~~d 250 (700)
T PRK12323 215 ----------AQGSMRDALSLTDQAIA----YSAGNVSEEAVRGMLGAID 250 (700)
T ss_pred ----------cCCCHHHHHHHHHHHHH----hccCCcCHHHHHHHhCCCC
Confidence 12456777776643332 2334688888877655443
No 131
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.1e-07 Score=106.10 Aligned_cols=191 Identities=23% Similarity=0.384 Sum_probs=114.8
Q ss_pred hcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccc
Q 003809 353 SIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTAS 432 (794)
Q Consensus 353 si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~ 432 (794)
-+-.+-||++++|+-||-.++=|.-+. ..+|.| +||+||||+|||.+++.||+.+.|.++.- |..|++--
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrg-----s~qGkI-lCf~GPPGVGKTSI~kSIA~ALnRkFfRf----SvGG~tDv 477 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRG-----SVQGKI-LCFVGPPGVGKTSIAKSIARALNRKFFRF----SVGGMTDV 477 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcc-----cCCCcE-EEEeCCCCCCcccHHHHHHHHhCCceEEE----eccccccH
Confidence 345578999999999988876554322 234554 89999999999999999999999988853 33344321
Q ss_pred cccCCCCcccc----cccCceeec------CCCeEEecccccCChhh----HHHHHHHhh-ccEEEEeec--ceEEeecC
Q 003809 433 VAKEPETGEFC----IEAGALMLA------DNGICCIDEFDKMDIRD----QVAIHEAME-QQTISITKA--GIQATLNA 495 (794)
Q Consensus 433 v~~d~~~g~~~----~~~Gal~la------d~GIl~IDE~dk~~~~~----~~~L~eame-~~~isi~ka--G~~~~l~a 495 (794)
..- .|... --||.++.+ .|-+++|||+||+.... -++|+|+|+ .|.-.+..- .+...+ +
T Consensus 478 AeI---kGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL-S 553 (906)
T KOG2004|consen 478 AEI---KGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL-S 553 (906)
T ss_pred Hhh---cccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch-h
Confidence 100 01111 125555443 56789999999987533 468999995 333222211 112222 4
Q ss_pred ceEEEEecCCCCCCCCCCCCccCccccc--CccccHHHH---HHHH-HHHhc---c---CCcCCHHHHHHHHHHHHH
Q 003809 496 RTSILAAANPAGGRYDKSKPLKKHEDAL--APAFTTAQL---KRYI-AYAKT---L---KPKLSLEARKLLVDSYVA 560 (794)
Q Consensus 496 r~siiAaaNP~~Gryd~~~~l~~~~~~~--~~~~~~~~l---r~yi-~~ar~---~---~P~ls~ea~~~L~~~Y~~ 560 (794)
++.||||||-..- -..+|..+-+.+ ..+...+.+ ++|+ -.++. + +..+++.|...|+++|+.
T Consensus 554 kVLFicTAN~idt---IP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Ycr 627 (906)
T KOG2004|consen 554 KVLFICTANVIDT---IPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCR 627 (906)
T ss_pred heEEEEecccccc---CChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHH
Confidence 6899999996530 011222222222 222333333 2332 12221 3 347899999999999985
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.57 E-value=2e-07 Score=114.50 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=96.1
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhC---CcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC---cceee-
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLG---GVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP---RSVYT- 419 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~g---g~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p---~~~~~- 419 (794)
+..|.+.+--.|+||+.+..++.-++.. |... ..+-+| .+||+||||+|||.++++++..+- ..+..
T Consensus 557 l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~--~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~ 630 (852)
T TIGR03345 557 VLSLPDRLAERVIGQDHALEAIAERIRTARAGLED----PRKPLG--VFLLVGPSGVGKTETALALAELLYGGEQNLITI 630 (852)
T ss_pred HHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCC----CCCCce--EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE
Confidence 4567788899999999988877666642 2211 111122 689999999999999999998862 11111
Q ss_pred cCC----ccCccccccccccCCCCcccccccCce----eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEE
Q 003809 420 SGK----SSSAAGLTASVAKEPETGEFCIEAGAL----MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQA 491 (794)
Q Consensus 420 ~g~----~ss~~gLt~~v~~d~~~g~~~~~~Gal----~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~ 491 (794)
... ..+...|.++.... .| .-+.|.| -....+|++||||+++++..++.|+++|++|.++.. .|...
T Consensus 631 dmse~~~~~~~~~l~g~~~gy--vg--~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~-~Gr~v 705 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSPPGY--VG--YGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-EGREI 705 (852)
T ss_pred eHHHhhhhhhhccccCCCCCc--cc--ccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecC-CCcEE
Confidence 100 00111111110000 00 0122322 223568999999999999999999999999998865 46666
Q ss_pred eecCceEEEEecCCCC
Q 003809 492 TLNARTSILAAANPAG 507 (794)
Q Consensus 492 ~l~ar~siiAaaNP~~ 507 (794)
.+. ++.||.|+|-..
T Consensus 706 d~~-n~iiI~TSNlg~ 720 (852)
T TIGR03345 706 DFK-NTVILLTSNAGS 720 (852)
T ss_pred ecc-ccEEEEeCCCch
Confidence 655 799999999754
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1.6e-06 Score=100.70 Aligned_cols=171 Identities=11% Similarity=0.037 Sum_probs=97.3
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeE-EEeCCCcchHHHHHHHHHhhCCccee----ecC-------
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINV-CIVGDPSCAKSQFLKYAAGIVPRSVY----TSG------- 421 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~ini-LLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g------- 421 (794)
-+-+|+||+.+++.|.-++-.|.-. |+ ||+||||+|||++++.+++.+..... .+|
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~------------hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~ 79 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLA------------HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQS 79 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCC------------eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 3446999999999999888777422 55 89999999999999999987521100 000
Q ss_pred ----CccCccccccc------cccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEE
Q 003809 422 ----KSSSAAGLTAS------VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQA 491 (794)
Q Consensus 422 ----~~ss~~gLt~~------v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~ 491 (794)
.......+.++ .+++.- ......| ..+...|++|||+++|+...+++|+..||+-
T Consensus 80 ~~~~~h~dv~eldaas~~gId~IReli-e~~~~~P---~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp----------- 144 (535)
T PRK08451 80 ALENRHIDIIEMDAASNRGIDDIRELI-EQTKYKP---SMARFKIFIIDEVHMLTKEAFNALLKTLEEP----------- 144 (535)
T ss_pred HhhcCCCeEEEeccccccCHHHHHHHH-HHHhhCc---ccCCeEEEEEECcccCCHHHHHHHHHHHhhc-----------
Confidence 00000000000 000000 0000001 1245569999999999999999999999862
Q ss_pred eecCceEEEEecCCCCCCCCCCCCccCccc-ccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHH
Q 003809 492 TLNARTSILAAANPAGGRYDKSKPLKKHED-ALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVD 556 (794)
Q Consensus 492 ~l~ar~siiAaaNP~~Gryd~~~~l~~~~~-~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~ 556 (794)
|..+.+|.++|-...-+ .++..+-. .--.+++.+.+..++...- .-...++++|...|..
T Consensus 145 --p~~t~FIL~ttd~~kL~---~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 145 --PSYVKFILATTDPLKLP---ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred --CCceEEEEEECChhhCc---hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 22333333333211111 11111111 1123467788888876553 3455678888888866
No 134
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1.2e-06 Score=103.45 Aligned_cols=208 Identities=15% Similarity=0.133 Sum_probs=119.2
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee----cCCc--------c
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT----SGKS--------S 424 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~~--------s 424 (794)
+|+||+.+++.|.-++..+... -.+||+|+||+|||++++.+++.+...... ++.- .
T Consensus 17 dIIGQe~vv~~L~~ai~~~rl~-----------Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g 85 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGRLH-----------HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAG 85 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCCCC-----------eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhcc
Confidence 6899999999988888776421 047999999999999999999875321111 1100 0
Q ss_pred CccccccccccCCCCcc----cccccC--ceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceE
Q 003809 425 SAAGLTASVAKEPETGE----FCIEAG--ALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTS 498 (794)
Q Consensus 425 s~~gLt~~v~~d~~~g~----~~~~~G--al~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~s 498 (794)
...++.. +......+. ..++.. .-..+...|++|||+++|+....++|+..||+- +..+.
T Consensus 86 ~~~DvlE-idaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~ 151 (709)
T PRK08691 86 RYVDLLE-IDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVK 151 (709)
T ss_pred CccceEE-EeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcE
Confidence 0001100 000000110 001100 001234569999999999999999999999852 12344
Q ss_pred EEEecCCCCCCCCCCCCccCc-ccccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCcccccc
Q 003809 499 ILAAANPAGGRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRM 576 (794)
Q Consensus 499 iiAaaNP~~Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~i 576 (794)
+|.++|-... . ..++..+ ....-..++.+.+..++...- .-...+++++...|.+.. ..
T Consensus 152 fILaTtd~~k-L--~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A----------------~G 212 (709)
T PRK08691 152 FILATTDPHK-V--PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA----------------AG 212 (709)
T ss_pred EEEEeCCccc-c--chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----------------CC
Confidence 4444442210 0 0001100 001113467777887776553 345668888888886521 24
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 577 TVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 577 T~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
++|.+.+++.-+.+. +...|+.++|...+...
T Consensus 213 slRdAlnLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 213 SMRDALSLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 578888887654443 35679999998876553
No 135
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.2e-06 Score=101.79 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=100.4
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeE-EEeCCCcchHHHHHHHHHhhCCcc--ee-ecCC
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINV-CIVGDPSCAKSQFLKYAAGIVPRS--VY-TSGK 422 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~ini-LLvG~PGtGKS~Ll~~i~~~~p~~--~~-~~g~ 422 (794)
|++..-.-+-+|+||+.++..|.-++..+... |. ||+||||||||++++++++.+... .. .+|.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~------------ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQGRLG------------HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 44444444557999999999888777776421 65 999999999999999999876310 00 0110
Q ss_pred ---------ccC--ccccccccccCCC-CcccccccCc-eeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecce
Q 003809 423 ---------SSS--AAGLTASVAKEPE-TGEFCIEAGA-LMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGI 489 (794)
Q Consensus 423 ---------~ss--~~gLt~~v~~d~~-~g~~~~~~Ga-l~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~ 489 (794)
+++ ...+.+....... -.+..-.... -+.+...|++|||++.|+...+++|+..|++..
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-------- 144 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-------- 144 (504)
T ss_pred ChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC--------
Confidence 000 0001110000000 0000000000 123456799999999999999999999997621
Q ss_pred EEeecCceEEEEecCCCCCCCCCCCCccCccc-ccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHH
Q 003809 490 QATLNARTSILAAANPAGGRYDKSKPLKKHED-ALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVD 556 (794)
Q Consensus 490 ~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~-~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~ 556 (794)
..+.+|.++|-.. ... ..+..+-. .--..++.+.+..|+...- .-.-.+++++...|.+
T Consensus 145 -----~~t~~Il~t~~~~-kl~--~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~ 205 (504)
T PRK14963 145 -----EHVIFILATTEPE-KMP--PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVAR 205 (504)
T ss_pred -----CCEEEEEEcCChh-hCC--hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2333333343211 010 01110000 1123477888888887643 3445678888888865
No 136
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=8.8e-07 Score=101.90 Aligned_cols=203 Identities=13% Similarity=0.123 Sum_probs=115.7
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc----ceeecCC--------
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR----SVYTSGK-------- 422 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~----~~~~~g~-------- 422 (794)
+.+++||+.+++.|.-++..|.-. . ++||+||||+|||++++.+++.+.- ..-.+|.
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~---h--------a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIP---Q--------SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCC---c--------eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence 346889999999887666665421 0 5999999999999999999985421 0000110
Q ss_pred ccCccc---cccccccCCCCcccc----cc---cCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEe
Q 003809 423 SSSAAG---LTASVAKEPETGEFC----IE---AGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQAT 492 (794)
Q Consensus 423 ~ss~~g---Lt~~v~~d~~~g~~~----~~---~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~ 492 (794)
..+..+ +.++- ..|... ++ .-+ +.+...|++|||++.|+...+++|+..||+-
T Consensus 81 ~~~~~Dv~eidaas----~~~vddIR~Iie~~~~~P-~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP------------ 143 (491)
T PRK14964 81 NSNHPDVIEIDAAS----NTSVDDIKVILENSCYLP-ISSKFKVYIIDEVHMLSNSAFNALLKTLEEP------------ 143 (491)
T ss_pred ccCCCCEEEEeccc----CCCHHHHHHHHHHHHhcc-ccCCceEEEEeChHhCCHHHHHHHHHHHhCC------------
Confidence 000011 11110 011000 00 001 2245679999999999999999999999862
Q ss_pred ecCceEEE-EecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCC
Q 003809 493 LNARTSIL-AAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPG 569 (794)
Q Consensus 493 l~ar~sii-AaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~ 569 (794)
+..+.+| +|+++.. . ..++..+-..+ -..++.+.+..++... ..-...+++++.+.|.+..
T Consensus 144 -p~~v~fIlatte~~K--l--~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s----------- 207 (491)
T PRK14964 144 -APHVKFILATTEVKK--I--PVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS----------- 207 (491)
T ss_pred -CCCeEEEEEeCChHH--H--HHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----------
Confidence 2233333 4433221 0 00111011111 1245677777777654 3456688999988887521
Q ss_pred CccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 570 SRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 570 ~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
..++|.+.+++.-+.+++ ...|+.++|.+.+.
T Consensus 208 -----~GslR~alslLdqli~y~----~~~It~e~V~~llg 239 (491)
T PRK14964 208 -----SGSMRNALFLLEQAAIYS----NNKISEKSVRDLLG 239 (491)
T ss_pred -----CCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 235677777765444332 24788888877643
No 137
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.55 E-value=1.3e-07 Score=115.04 Aligned_cols=189 Identities=16% Similarity=0.213 Sum_probs=131.5
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceee--cCCccCccccccccccCCCCcccccccCceeec--CCCeEEecccccC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYT--SGKSSSAAGLTASVAKEPETGEFCIEAGALMLA--DNGICCIDEFDKM 465 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~--~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la--d~GIl~IDE~dk~ 465 (794)
..+||-||+++|||.+..++++...+.+.. .+..+......++.+.| .+|....+.|+|+-| .|-.+++||++..
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd-d~G~lsFkEGvLVeAlR~GyWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD-DDGSLSFKEGVLVEALRRGYWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec-CCCceeeehhHHHHHHhcCcEEEeeccccC
Confidence 589999999999999999999998876653 22233344455555544 467777889999987 5669999999999
Q ss_pred ChhhHHHHHHHhh-ccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCcc--Ccc---cccCccccHHHHHHHHHHH
Q 003809 466 DIRDQVAIHEAME-QQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLK--KHE---DALAPAFTTAQLKRYIAYA 539 (794)
Q Consensus 466 ~~~~~~~L~eame-~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~--~~~---~~~~~~~~~~~lr~yi~~a 539 (794)
+.+...+|...++ ++.+.|.........+.+|.++||.||++| |...+.+. .+. +..-..++.+.|...+.-
T Consensus 968 pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-YgGRK~LSrAFRNRFlE~hFddipedEle~ILh~- 1045 (4600)
T COG5271 968 PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-YGGRKGLSRAFRNRFLEMHFDDIPEDELEEILHG- 1045 (4600)
T ss_pred cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-ccchHHHHHHHHhhhHhhhcccCcHHHHHHHHhc-
Confidence 9999999999996 566777766666666779999999999853 55555554 111 112233566666655432
Q ss_pred hccCCcCCHHHHHHHHHHHHHhccCCCCC--CCccccccCHHHHHHH
Q 003809 540 KTLKPKLSLEARKLLVDSYVALRRGDTTP--GSRVAYRMTVRQLEAL 584 (794)
Q Consensus 540 r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~--~~~~~~~iT~R~Lesl 584 (794)
+..+.+.-+++|++.|..|+...... ...++.-.|.|.|-+|
T Consensus 1046 ---rc~iapSyakKiVeVyr~Ls~rRs~~rifeqknsfaTLRDLFrW 1089 (4600)
T COG5271 1046 ---RCEIAPSYAKKIVEVYRGLSSRRSINRIFEQKNSFATLRDLFRW 1089 (4600)
T ss_pred ---cCccCHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHH
Confidence 23455566778999999987654321 1222333677776554
No 138
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.7e-07 Score=94.90 Aligned_cols=179 Identities=22% Similarity=0.263 Sum_probs=104.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee-cCCccC--ccccccccccCCCCcccccccCceeec---CCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSS--AAGLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss--~~gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk 464 (794)
.+||+||||||||+|++++++....++.. .|.... .-|-....++| .+-+| ...|+||||+|.
T Consensus 191 gvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrd-----------vfrlakenapsiifideida 259 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRD-----------VFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHH-----------HHHHHhccCCcEEEeehhhh
Confidence 48999999999999999999865444331 211000 00111111121 12223 246999999984
Q ss_pred C-----------ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccC
Q 003809 465 M-----------DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALA 524 (794)
Q Consensus 465 ~-----------~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~ 524 (794)
+ +.+.|..|++.+.|-. |... .+++-+|.|+|.. +||.|+...+.
T Consensus 260 iatkrfdaqtgadrevqril~ellnqmd------gfdq--~~nvkvimatnradtldpallrpgrldrkiefp------- 324 (408)
T KOG0727|consen 260 IATKRFDAQTGADREVQRILIELLNQMD------GFDQ--TTNVKVIMATNRADTLDPALLRPGRLDRKIEFP------- 324 (408)
T ss_pred HhhhhccccccccHHHHHHHHHHHHhcc------CcCc--ccceEEEEecCcccccCHhhcCCccccccccCC-------
Confidence 3 4446667888876543 3332 2457888999964 47777766555
Q ss_pred ccccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 525 PAFTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 525 ~~~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
++.---++.+--+-.-+-.+++++- | +-|+ . .+-.+|..++.++..-|--+|--.-+-.|...|
T Consensus 325 --lpdrrqkrlvf~titskm~ls~~vd--l-e~~v-~----------rpdkis~adi~aicqeagm~avr~nryvvl~kd 388 (408)
T KOG0727|consen 325 --LPDRRQKRLVFSTITSKMNLSDEVD--L-EDLV-A----------RPDKISGADINAICQEAGMLAVRENRYVVLQKD 388 (408)
T ss_pred --CCchhhhhhhHHhhhhcccCCcccC--H-HHHh-c----------CccccchhhHHHHHHHHhHHHHHhcceeeeHHH
Confidence 3222222222111111112222211 1 1111 1 122477899999999999999999999999999
Q ss_pred HHHHHHH
Q 003809 605 VRVAVRL 611 (794)
Q Consensus 605 v~eAi~L 611 (794)
+++|+.-
T Consensus 389 ~e~ay~~ 395 (408)
T KOG0727|consen 389 FEKAYKT 395 (408)
T ss_pred HHHHHHh
Confidence 9999864
No 139
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.53 E-value=2e-06 Score=89.71 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=101.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc----ceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR----SVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~----~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
+++|+|+||||||+|++++++.+.. ..+.+.. .+.. .. -.....++++|||++.++
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-----~~~~---------~~------~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-----SPLL---------AF------DFDPEAELYAVDDVERLD 103 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-----HhHH---------HH------hhcccCCEEEEeChhhcC
Confidence 7999999999999999999986421 1222111 0000 00 112346799999999999
Q ss_pred hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCc----ccccCccccHHHHHHHHH-HHhc
Q 003809 467 IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKH----EDALAPAFTTAQLKRYIA-YAKT 541 (794)
Q Consensus 467 ~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~----~~~~~~~~~~~~lr~yi~-~ar~ 541 (794)
...+..|+..++.-.- .....++.+++..+....-...+..+ ....-++++.+....++. .+..
T Consensus 104 ~~~~~~L~~~~~~~~~-----------~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 104 DAQQIALFNLFNRVRA-----------HGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred chHHHHHHHHHHHHHH-----------cCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 9888889888854210 11222333443222111100101100 001113344444444443 2334
Q ss_pred cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 542 LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 542 ~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
....+++++.+.|.. .++-++|+|..+++.-.+.|.... ..||...+++++.
T Consensus 173 ~~v~l~~~al~~L~~----------------~~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 173 RGLQLADEVPDYLLT----------------HFRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred cCCCCCHHHHHHHHH----------------hccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 567889998888864 356778999999997767776665 4799999998864
No 140
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.3e-07 Score=97.48 Aligned_cols=131 Identities=24% Similarity=0.265 Sum_probs=75.6
Q ss_pred ceechhhHHHHHHHH---------HhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcc
Q 003809 357 TVFGHQDIKRAILLM---------LLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAA 427 (794)
Q Consensus 357 ~I~G~e~vK~alll~---------L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~ 427 (794)
+|-|.+.+|.||--+ ||.|..+ ..| .|||+||||||||.|+++++..+.-.+|.. +..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~------Pwr---giLLyGPPGTGKSYLAKAVATEAnSTFFSv----SSS 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRK------PWR---GILLYGPPGTGKSYLAKAVATEANSTFFSV----SSS 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCC------cce---eEEEeCCCCCcHHHHHHHHHhhcCCceEEe----ehH
Confidence 577888777776444 4555422 122 599999999999999999999988444432 233
Q ss_pred ccccccccCCCCcccccccCceeec---CCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEee
Q 003809 428 GLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATL 493 (794)
Q Consensus 428 gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l 493 (794)
+|....... .+ .+....+-+| ...|+||||+|.+.-. ....++--| ||. ..-
T Consensus 201 DLvSKWmGE---SE-kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQM-qGV---------G~d 266 (439)
T KOG0739|consen 201 DLVSKWMGE---SE-KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQM-QGV---------GND 266 (439)
T ss_pred HHHHHHhcc---HH-HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhh-hcc---------ccC
Confidence 443322211 00 0111122223 3479999999965322 112222222 111 122
Q ss_pred cCceEEEEecCCCC-------CCCCCCC
Q 003809 494 NARTSILAAANPAG-------GRYDKSK 514 (794)
Q Consensus 494 ~ar~siiAaaNP~~-------Gryd~~~ 514 (794)
+..+.|++|+|.++ .||+...
T Consensus 267 ~~gvLVLgATNiPw~LDsAIRRRFekRI 294 (439)
T KOG0739|consen 267 NDGVLVLGATNIPWVLDSAIRRRFEKRI 294 (439)
T ss_pred CCceEEEecCCCchhHHHHHHHHhhcce
Confidence 34689999999886 4777654
No 141
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=8.1e-07 Score=103.85 Aligned_cols=213 Identities=12% Similarity=0.083 Sum_probs=117.2
Q ss_pred hHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee----ecC
Q 003809 346 FFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY----TSG 421 (794)
Q Consensus 346 i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g 421 (794)
++++..-.-+.+|+||+.+++.+.-++..|... =.+||+||||+|||++|+.+++.+.-... .+|
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~-----------hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILNNKLT-----------HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCC-----------ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 445555555567889999999888877665321 03889999999999999999998532111 111
Q ss_pred Ccc--------Cccc---ccccc------ccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEE
Q 003809 422 KSS--------SAAG---LTASV------AKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISI 484 (794)
Q Consensus 422 ~~s--------s~~g---Lt~~v------~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi 484 (794)
.-. +..+ +.++- +++- .......| +.++..|++|||++.|+...+++|+..||+-
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas~igVd~IReI-i~~~~~~P---~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP---- 146 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAASNNGVDEIRNI-IDNINYLP---TTFKYKVYIIDEAHMLSTSAWNALLKTLEEP---- 146 (605)
T ss_pred ccHHHHHHHcCCCCceEEeccccccCHHHHHHH-HHHHHhch---hhCCcEEEEEechHhCCHHHHHHHHHHHHhC----
Confidence 100 0000 00000 0000 00000011 2346789999999999999999999999852
Q ss_pred eecceEEeecCceEE-EEecCCCCCCCCCCCCccCcccc-cCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHh
Q 003809 485 TKAGIQATLNARTSI-LAAANPAGGRYDKSKPLKKHEDA-LAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVAL 561 (794)
Q Consensus 485 ~kaG~~~~l~ar~si-iAaaNP~~Gryd~~~~l~~~~~~-~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~l 561 (794)
|..+.+ ++|++|.. .. .++..+-.. .-..++.+.+..++...- .....+++++...|.+..
T Consensus 147 ---------p~~tvfIL~Tt~~~K--Ll--~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS--- 210 (605)
T PRK05896 147 ---------PKHVVFIFATTEFQK--IP--LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLA--- 210 (605)
T ss_pred ---------CCcEEEEEECCChHh--hh--HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---
Confidence 123333 34433311 10 011101111 113466777777776543 344568888877776521
Q ss_pred ccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 562 RRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 562 R~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
..++|.+.+++.-. +..... .|+.++|.+++.
T Consensus 211 -------------~GdlR~AlnlLekL---~~y~~~-~It~e~V~ellg 242 (605)
T PRK05896 211 -------------DGSLRDGLSILDQL---STFKNS-EIDIEDINKTFG 242 (605)
T ss_pred -------------CCcHHHHHHHHHHH---HhhcCC-CCCHHHHHHHhc
Confidence 12456655555432 222232 388887777543
No 142
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.7e-06 Score=101.81 Aligned_cols=181 Identities=14% Similarity=0.116 Sum_probs=101.4
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCccee----ecC
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVY----TSG 421 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g 421 (794)
|.+..-.-+-+|+||+.+++.|.-++..|... | +||+||+|||||++++.+++.+.-..- .+|
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~------------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAGRIN------------HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 44444445567899999999998888877532 7 589999999999999999987542100 011
Q ss_pred C------ccC-ccccccccccCCC--Ccccccc----c--CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEee
Q 003809 422 K------SSS-AAGLTASVAKEPE--TGEFCIE----A--GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITK 486 (794)
Q Consensus 422 ~------~ss-~~gLt~~v~~d~~--~g~~~~~----~--Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~k 486 (794)
. ... ..+-...+.-+.. .|.-.++ . -.-+.++.-|++|||++.|+...+++|+..||+-
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp------ 145 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP------ 145 (584)
T ss_pred ccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC------
Confidence 0 000 0000000000100 0100000 0 0012345679999999999999999999999861
Q ss_pred cceEEeecCce-EEEEecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHH
Q 003809 487 AGIQATLNART-SILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVD 556 (794)
Q Consensus 487 aG~~~~l~ar~-siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~ 556 (794)
+..+ .|++|++|.. . ..++..+-..+ -..++.+.+..|+...- .-.-.+++++..+|..
T Consensus 146 -------p~~~~fIL~tte~~k--l--l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 146 -------PEHLIFIFATTEPEK--V--LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred -------CCCeEEEEEeCChHh--h--HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2233 3445544421 0 00111010011 12466777887776543 3455688888877755
No 143
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=2.3e-06 Score=101.40 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=96.1
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCccee----ecCCcc----
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVY----TSGKSS---- 424 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g~~s---- 424 (794)
-+-+|+||+.+++.|.-++..|.-. | +||+|+||+|||++++.+++.+.-... .+|.-.
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~------------hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLH------------HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 3446889999999988888776422 5 489999999999999999998654211 011100
Q ss_pred ----CccccccccccCCCCccc----ccccCce--eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeec
Q 003809 425 ----SAAGLTASVAKEPETGEF----CIEAGAL--MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLN 494 (794)
Q Consensus 425 ----s~~gLt~~v~~d~~~g~~----~~~~Gal--~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ 494 (794)
...++.. +......+.. .++.-.. .....-|++|||+++|+...+++|+..||.- +
T Consensus 82 i~~g~~~D~ie-idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p 147 (647)
T PRK07994 82 IEQGRFVDLIE-IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------P 147 (647)
T ss_pred HHcCCCCCcee-ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------C
Confidence 0001100 0000001100 0000000 1123349999999999999999999999862 2
Q ss_pred Cce-EEEEecCCCCCCCCCCCCccCcc-cccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHH
Q 003809 495 ART-SILAAANPAGGRYDKSKPLKKHE-DALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVD 556 (794)
Q Consensus 495 ar~-siiAaaNP~~Gryd~~~~l~~~~-~~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~ 556 (794)
..+ .|++|++|.. .- .++..+- ...-..++.+.+..|+.+.- .-...+++++...|..
T Consensus 148 ~~v~FIL~Tt~~~k--Ll--~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 148 EHVKFLLATTDPQK--LP--VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred CCeEEEEecCCccc--cc--hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 233 3334444321 10 0111000 01123467788888877653 2345677777777754
No 144
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.48 E-value=1.8e-06 Score=95.95 Aligned_cols=206 Identities=11% Similarity=0.061 Sum_probs=113.2
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee----ecCCc-------
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY----TSGKS------- 423 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g~~------- 423 (794)
+.+|.|++.++..+.-++..|... -.+||+||||+|||++++.+++.+..... .+|.-
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~-----------~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIA-----------HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCC-----------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 346889999999888877766422 04789999999999999999987642210 01100
Q ss_pred -cCccccccccccCCC--Cccc----ccc-cCce-eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeec
Q 003809 424 -SSAAGLTASVAKEPE--TGEF----CIE-AGAL-MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLN 494 (794)
Q Consensus 424 -ss~~gLt~~v~~d~~--~g~~----~~~-~Gal-~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ 494 (794)
.....+. .-++. .+.. .+. .... +.++..|++|||++.++...+++|+..|++- +
T Consensus 82 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-------------~ 145 (355)
T TIGR02397 82 SGSSLDVI---EIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-------------P 145 (355)
T ss_pred cCCCCCEE---EeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------c
Confidence 0000000 00000 0000 000 0011 2345679999999999998899999998752 2
Q ss_pred CceEEEEecCCCCCCCCCCCCccCcc-cccCccccHHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCcc
Q 003809 495 ARTSILAAANPAGGRYDKSKPLKKHE-DALAPAFTTAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRV 572 (794)
Q Consensus 495 ar~siiAaaNP~~Gryd~~~~l~~~~-~~~~~~~~~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~ 572 (794)
..+.+|.++|... +.. ..+..+- ...-++++.+.+..|+.. ++...-.+++++...|.+..
T Consensus 146 ~~~~lIl~~~~~~-~l~--~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~-------------- 208 (355)
T TIGR02397 146 EHVVFILATTEPH-KIP--ATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAA-------------- 208 (355)
T ss_pred cceeEEEEeCCHH-HHH--HHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--------------
Confidence 3444444444221 000 0111000 111134567777777754 33444567888887776521
Q ss_pred ccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 573 AYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 573 ~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
.-++|.+...+.-+... ....|+.+||.+++.
T Consensus 209 --~g~~~~a~~~lekl~~~----~~~~it~~~v~~~~~ 240 (355)
T TIGR02397 209 --DGSLRDALSLLDQLISF----GNGNITYEDVNELLG 240 (355)
T ss_pred --CCChHHHHHHHHHHHhh----cCCCCCHHHHHHHhC
Confidence 12346655554332222 224599999988763
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=3.4e-06 Score=99.42 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=100.7
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcceee----cC
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVYT----SG 421 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g 421 (794)
|.+..-.-+-+|.||+.+++.+.-++..+... | +||+||||||||++++.+++.+.-.... ++
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~------------hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQGKIS------------HAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 44444444457899999999988888776422 5 6889999999999999999875421111 11
Q ss_pred CccCc----cccc-cccccCCCC--ccc----ccc-c-CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecc
Q 003809 422 KSSSA----AGLT-ASVAKEPET--GEF----CIE-A-GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAG 488 (794)
Q Consensus 422 ~~ss~----~gLt-~~v~~d~~~--g~~----~~~-~-Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG 488 (794)
.-.+- .|.. .-+..+..+ +.- ..+ . -.-..++.-|++|||+++|+....++|+..||+-
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-------- 146 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-------- 146 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC--------
Confidence 00000 0000 000001100 000 000 0 0012345669999999999999999999998753
Q ss_pred eEEeecCce-EEEEecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHH
Q 003809 489 IQATLNART-SILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVD 556 (794)
Q Consensus 489 ~~~~l~ar~-siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~ 556 (794)
|..+ .|++|++|.. .. ..+..+-..+ -+.++.+.+..++.+. +.....+++++...|..
T Consensus 147 -----p~~~ifIlatt~~~k--i~--~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~ 208 (559)
T PRK05563 147 -----PAHVIFILATTEPHK--IP--ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIAR 208 (559)
T ss_pred -----CCCeEEEEEeCChhh--Cc--HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2233 3445544421 11 1111111111 1345677777777654 34556788888877765
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.46 E-value=4.6e-07 Score=111.60 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=91.5
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHh----CCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc---ee-
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLL----GGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VY- 418 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~----gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~- 418 (794)
+..|.+.+.-.|+|++.+.+.+.-++. |......+.| ++||+||||||||.+++++++.+... +.
T Consensus 559 l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~-------~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~ 631 (857)
T PRK10865 559 LLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIG-------SFLFLGPTGVGKTELCKALANFMFDSDDAMVR 631 (857)
T ss_pred HHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCc-------eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEE
Confidence 456788899999999987666655553 3221111212 78999999999999999999876421 11
Q ss_pred ecCCcc----CccccccccccC--CCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEe
Q 003809 419 TSGKSS----SAAGLTASVAKE--PETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQAT 492 (794)
Q Consensus 419 ~~g~~s----s~~gLt~~v~~d--~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~ 492 (794)
...... +...|.++.... ...+.+ -.+++.....++++|||++++++..++.|+++|++|.++-. .|....
T Consensus 632 id~se~~~~~~~~~LiG~~pgy~g~~~~g~--l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~-~gr~vd 708 (857)
T PRK10865 632 IDMSEFMEKHSVSRLVGAPPGYVGYEEGGY--LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG-QGRTVD 708 (857)
T ss_pred EEhHHhhhhhhHHHHhCCCCcccccchhHH--HHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC-CceEEe
Confidence 110000 000111100000 000000 01112223458999999999999999999999999998753 344444
Q ss_pred ecCceEEEEecCCC
Q 003809 493 LNARTSILAAANPA 506 (794)
Q Consensus 493 l~ar~siiAaaNP~ 506 (794)
+. ++.||.|+|..
T Consensus 709 ~r-n~iiI~TSN~g 721 (857)
T PRK10865 709 FR-NTVVIMTSNLG 721 (857)
T ss_pred ec-ccEEEEeCCcc
Confidence 43 57799999974
No 147
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.1e-06 Score=98.48 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=115.2
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCcc-----------
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSS----------- 424 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~s----------- 424 (794)
-+|+||+.+++.|.-++-.+.-. -++||+||||||||++++.+++.+.......+...
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~-----------ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVA-----------PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQ 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCC-----------ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhc
Confidence 36789999998888777766311 16889999999999999999998643111000000
Q ss_pred -CccccccccccCCCCcccccc-----cC-ceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCce
Q 003809 425 -SAAGLTASVAKEPETGEFCIE-----AG-ALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNART 497 (794)
Q Consensus 425 -s~~gLt~~v~~d~~~g~~~~~-----~G-al~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~ 497 (794)
...++.- +......+.-.++ .. .-+.+...|++|||+++|+...+++|+..||+-. .++
T Consensus 85 g~hpDv~e-Id~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-------------~~~ 150 (624)
T PRK14959 85 GMHVDVVE-IDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-------------ARV 150 (624)
T ss_pred CCCCceEE-EecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-------------CCE
Confidence 0000000 0000000000000 00 0123345699999999999999999999998621 234
Q ss_pred EEEE-ecCCCCCCCCCCCCccCcc-cccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCcccc
Q 003809 498 SILA-AANPAGGRYDKSKPLKKHE-DALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAY 574 (794)
Q Consensus 498 siiA-aaNP~~Gryd~~~~l~~~~-~~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~ 574 (794)
.+|. |+++.. +.. .+..+- ...-+.++.+.+..++...- .....+++++.+.|..+-
T Consensus 151 ifILaTt~~~k--ll~--TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s---------------- 210 (624)
T PRK14959 151 TFVLATTEPHK--FPV--TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRA---------------- 210 (624)
T ss_pred EEEEecCChhh--hhH--HHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------------
Confidence 3444 434321 100 111000 01123567777887776533 344568888888887621
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 575 RMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 575 ~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
.-++|.+.+++.-+ . ....+.|+.++|..++.+
T Consensus 211 ~GdlR~Al~lLeql--l--~~g~~~It~d~V~~~lg~ 243 (624)
T PRK14959 211 AGSVRDSMSLLGQV--L--ALGESRLTIDGARGVLGL 243 (624)
T ss_pred CCCHHHHHHHHHHH--H--HhcCCCcCHHHHHHHhCC
Confidence 13456666666522 1 225567888888877633
No 148
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=98.45 E-value=2e-05 Score=86.17 Aligned_cols=242 Identities=17% Similarity=0.214 Sum_probs=159.4
Q ss_pred hhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCc--chHHHHHHHHHhhCCcceeecCCccCccccccccccCCC
Q 003809 361 HQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPS--CAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPE 438 (794)
Q Consensus 361 ~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PG--tGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~ 438 (794)
...+-.-+++.|.+.+... .+|.. =|..-+=|++=|. +--|+|.+.+..++|++++.......-.-..-...+|.+
T Consensus 283 d~iAAeyLllhLlStV~~R-~d~l~-iGkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~pmtie~lNta~f~PkkDye 360 (543)
T KOG2545|consen 283 DNIAAEYLLLHLLSTVYHR-TDGLV-IGKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQPMTIEELNTAPFYPKKDYE 360 (543)
T ss_pred chHHHHHHHHHHHHHhhcc-ccceE-eeeeEEeecCCCchhHHHHHHHHHHHHhchhhheeeeeHHhhcccCcccccccc
Confidence 3445667888888776431 22222 1333344444443 356788888888899887743221111000111233322
Q ss_pred CcccccccCceeecCCCeEEecccc-------cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCC
Q 003809 439 TGEFCIEAGALMLADNGICCIDEFD-------KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYD 511 (794)
Q Consensus 439 ~g~~~~~~Gal~lad~GIl~IDE~d-------k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd 511 (794)
...+.+|.|-+|+|-.++|||=. ...-...+.|-..+++|.+...-.-....+++++.++..+- ||--
T Consensus 361 --tNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv~vlIlSe---Grsi 435 (543)
T KOG2545|consen 361 --TNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNVRVLILSE---GRSI 435 (543)
T ss_pred --ccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEeccCceEEEeeC---Cccc
Confidence 33478999999999999999964 33334556788889999987654455667777777777654 3311
Q ss_pred C--CCCccCccc---ccCcc--ccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHH
Q 003809 512 K--SKPLKKHED---ALAPA--FTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEAL 584 (794)
Q Consensus 512 ~--~~~l~~~~~---~~~~~--~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~Lesl 584 (794)
- +..++.+.. .++.. -....+|.|+..+|...-.+++|..+.+..-|+.+|+.+... ....|..+
T Consensus 436 lPADl~i~lqp~~v~~le~~tps~l~q~rcyltt~r~l~~nIsee~t~~iq~dfV~mRq~n~~s--------naddLs~l 507 (543)
T KOG2545|consen 436 LPADLGIRLQPDSVDTLEFPTPSDLLQFRCYLTTMRNLRANISEEMTDYIQSDFVSMRQYNKES--------NADDLSLL 507 (543)
T ss_pred CcccccccCCCCCCCccccCChhHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhhCccc--------chhHHHHH
Confidence 1 111111111 12222 234568889999999999999999999999999999987632 25788889
Q ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhcc
Q 003809 585 IRLSEAIARSHLETQVHPRHVRVAVRLLKTSVI 617 (794)
Q Consensus 585 iRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~ 617 (794)
+-+|+..++-.++++++.+|-..|.+|-...-.
T Consensus 508 Lv~sRlls~S~G~ttlsre~wq~a~ele~lrr~ 540 (543)
T KOG2545|consen 508 LVCSRLLSKSFGRTTLSREDWQAARELENLRRV 540 (543)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998665443
No 149
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=2.4e-06 Score=104.20 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=95.0
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcce----eecCC------
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSV----YTSGK------ 422 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~----~~~g~------ 422 (794)
-+-+|+||+.+++.|.-++..|... | +||+|++|||||++++.+++.+.-.. ..+|.
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~------------Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRIN------------HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCC------------ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 3346889999999988888776422 6 69999999999999999998864210 00111
Q ss_pred ----ccCccccccccccCC-C-Ccc----ccccc--CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceE
Q 003809 423 ----SSSAAGLTASVAKEP-E-TGE----FCIEA--GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQ 490 (794)
Q Consensus 423 ----~ss~~gLt~~v~~d~-~-~g~----~~~~~--Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~ 490 (794)
.....++. .+ +. . .+. ...+. -.-..+...|++|||+++|+...+++|+..||+-
T Consensus 81 ~~~g~~~~~dv~--ei-daas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp---------- 147 (824)
T PRK07764 81 LAPGGPGSLDVT--EI-DAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP---------- 147 (824)
T ss_pred HHcCCCCCCcEE--Ee-cccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC----------
Confidence 00001110 00 00 0 000 00000 0012245569999999999999999999999862
Q ss_pred EeecCceEEE-EecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHH
Q 003809 491 ATLNARTSIL-AAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVD 556 (794)
Q Consensus 491 ~~l~ar~sii-AaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~ 556 (794)
+..+.|| +|+++.. . ...++.+-..+ -..++.+.|.+|+... +.-.-.+++++..+|+.
T Consensus 148 ---P~~~~fIl~tt~~~k--L--l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 148 ---PEHLKFIFATTEPDK--V--IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred ---CCCeEEEEEeCChhh--h--hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2233333 3333321 0 01111111111 1235677777777543 23345577777776655
No 150
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.7e-07 Score=99.47 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=75.5
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceeecCCc-cCccccccccccCCCCcc---cccccCceeecCCCeEEecccccC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKS-SSAAGLTASVAKEPETGE---FCIEAGALMLADNGICCIDEFDKM 465 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~-ss~~gLt~~v~~d~~~g~---~~~~~Gal~lad~GIl~IDE~dk~ 465 (794)
.||||+||+|+|||.|++.+++.+..++..+... -+.+|..+- |-++-- ..--.+-+..|..||+||||+||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGe---DVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi 303 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGE---DVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKI 303 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccc---cHHHHHHHHHHHccCCHHHHhcCeEEEehhhhh
Confidence 4999999999999999999999987766543331 234444331 100000 000123344578999999999988
Q ss_pred Ch--------------hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 466 DI--------------RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 466 ~~--------------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
.. -.|.+|+..+|--.+.+.+.|.....+-....|-|+|..
T Consensus 304 ~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnIL 358 (564)
T KOG0745|consen 304 TKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNIL 358 (564)
T ss_pred cccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceE
Confidence 62 268899999998888886556544555556666666644
No 151
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=6.8e-06 Score=96.18 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=109.3
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcceee----cCCc-------
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVYT----SGKS------- 423 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~~------- 423 (794)
.+|+||+.+++.|.-++..+... | +||+||||+|||++++.+++.+.-.... +|.-
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~------------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~ 83 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLH------------HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 36889999999988888766422 5 5899999999999999999876321110 1110
Q ss_pred -cCccccccccccCC--CCcc----ccccc--CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeec
Q 003809 424 -SSAAGLTASVAKEP--ETGE----FCIEA--GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLN 494 (794)
Q Consensus 424 -ss~~gLt~~v~~d~--~~g~----~~~~~--Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ 494 (794)
....++.. -+. ..+. ..++. ..-..+...|++|||+++|+...+++|+..||+- |
T Consensus 84 ~~~~~d~~e---i~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p 147 (527)
T PRK14969 84 SGRFVDLIE---VDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------P 147 (527)
T ss_pred cCCCCceeE---eeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-------------C
Confidence 00000000 000 0000 00000 0001234569999999999999999999999862 1
Q ss_pred Cce-EEEEecCCCCCCCCCCCCccCccc-ccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCc
Q 003809 495 ART-SILAAANPAGGRYDKSKPLKKHED-ALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSR 571 (794)
Q Consensus 495 ar~-siiAaaNP~~Gryd~~~~l~~~~~-~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~ 571 (794)
..+ .|++|++|.. .-. ++..+-. .--..++.+.+..|+...- .-.-.+++++...|...
T Consensus 148 ~~~~fIL~t~d~~k--il~--tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~-------------- 209 (527)
T PRK14969 148 EHVKFILATTDPQK--IPV--TVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA-------------- 209 (527)
T ss_pred CCEEEEEEeCChhh--Cch--hHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------
Confidence 233 4445555432 100 1110000 0112356666776665432 22345677776666542
Q ss_pred cccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 572 VAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 572 ~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
..-++|...+++.-+-+. ....|+.++|.+.+
T Consensus 210 --s~Gslr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 210 --AAGSMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred --cCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 123457666665433222 35567777666543
No 152
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.43 E-value=2.7e-06 Score=89.20 Aligned_cols=184 Identities=20% Similarity=0.266 Sum_probs=101.9
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHH
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQV 471 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~ 471 (794)
-.++||+|||||..++.+++.+.+.+++..... ++....... +-.|+. ..|..+|+|||++++.+...
T Consensus 35 ~~~~GpagtGKtetik~La~~lG~~~~vfnc~~---~~~~~~l~r-------il~G~~--~~GaW~cfdefnrl~~~vLS 102 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARALGRFVVVFNCSE---QMDYQSLSR-------ILKGLA--QSGAWLCFDEFNRLSEEVLS 102 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCTT--EEEEETTS---SS-HHHHHH-------HHHHHH--HHT-EEEEETCCCSSHHHHH
T ss_pred CCCcCCCCCCchhHHHHHHHHhCCeEEEecccc---cccHHHHHH-------HHHHHh--hcCchhhhhhhhhhhHHHHH
Confidence 478999999999999999999999888632211 111111100 111211 13568999999999998766
Q ss_pred HH-------HHHhhccEEEEeecceEEeecCceEEEEecCCCC-CCCCCCCCcc--CcccccCccccHHHHHHHHHHHhc
Q 003809 472 AI-------HEAMEQQTISITKAGIQATLNARTSILAAANPAG-GRYDKSKPLK--KHEDALAPAFTTAQLKRYIAYAKT 541 (794)
Q Consensus 472 ~L-------~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~-Gryd~~~~l~--~~~~~~~~~~~~~~lr~yi~~ar~ 541 (794)
.+ ..++..+.-.+.-.|....++..+.++.|+||.. ||..-...++ .+.-.+.. -+...+-....++.-
T Consensus 103 ~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~-PD~~~I~ei~L~s~G 181 (231)
T PF12774_consen 103 VISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMV-PDLSLIAEILLLSQG 181 (231)
T ss_dssp HHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S---HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeC-CCHHHHHHHHHHHcC
Confidence 54 4455444433444588889998999999999974 3322111121 11111111 122233333333332
Q ss_pred cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHH
Q 003809 542 LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIAR 593 (794)
Q Consensus 542 ~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Ar 593 (794)
+ .=+....+.|...|..++..-. ....|.+..|.+.++++.|..+-|
T Consensus 182 F--~~a~~La~kl~~l~~l~~~~lS---~q~hydfgLRalk~vl~~a~~~kr 228 (231)
T PF12774_consen 182 F--KDAKSLAKKLVSLFQLCKEQLS---KQDHYDFGLRALKSVLRMAGSLKR 228 (231)
T ss_dssp T--SSHHHHHHHHHHHHHHHHHCS----SSTT---SHHHHHHHHHHHHHHHT
T ss_pred c--hhHHHHHHHHHHHHHHHHHhhc---cCccccccHHHHHHHHHHHHHHhc
Confidence 2 2245667788888888776643 346788999999999999977654
No 153
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=4.6e-06 Score=98.99 Aligned_cols=182 Identities=13% Similarity=0.118 Sum_probs=97.3
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee-e----cC
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY-T----SG 421 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~-~----~g 421 (794)
|++..-.-+.+|+||+.+++.|.-++..|... -.+||+||||+|||++++.+++.+.-... . +|
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~-----------~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEGRVA-----------HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCc-----------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 44444445557899999999988887766421 03699999999999999999987642110 0 01
Q ss_pred CccC----ccccccccc-cCC--CCc-----cc--ccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeec
Q 003809 422 KSSS----AAGLTASVA-KEP--ETG-----EF--CIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKA 487 (794)
Q Consensus 422 ~~ss----~~gLt~~v~-~d~--~~g-----~~--~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~ka 487 (794)
.-.+ ..|...-+. -+. ..+ +. ...... +.++..|++|||+++|+.+.+++|+..||+-.
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p-~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp------ 148 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP-ALARYKVYIIDEVHMLSTAAFNALLKTLEEPP------ 148 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc-ccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC------
Confidence 0000 000000000 000 000 00 000111 23567899999999999999999999998631
Q ss_pred ceEEeecCceEEEEecCCCCCCCCCCCCccCcc-cccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHH
Q 003809 488 GIQATLNARTSILAAANPAGGRYDKSKPLKKHE-DALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVD 556 (794)
Q Consensus 488 G~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~-~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~ 556 (794)
..+.||.+++-... . ...+..+- ...-..++.+.+..++... +...-.+++++...|..
T Consensus 149 -------~~tv~Il~t~~~~k-l--l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~ 209 (585)
T PRK14950 149 -------PHAIFILATTEVHK-V--PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIAR 209 (585)
T ss_pred -------CCeEEEEEeCChhh-h--hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 23333333331110 0 00111000 0011234566666666533 34445688888877765
No 154
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=5.3e-06 Score=98.05 Aligned_cols=201 Identities=14% Similarity=0.106 Sum_probs=110.8
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeE-EEeCCCcchHHHHHHHHHhhCCccee---------ecC----
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINV-CIVGDPSCAKSQFLKYAAGIVPRSVY---------TSG---- 421 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~ini-LLvG~PGtGKS~Ll~~i~~~~p~~~~---------~~g---- 421 (794)
-+|+||+.+++.|.-++..+.-. |. ||+|++|+|||++++.+++.+.-... .+|
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~------------ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLH------------HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 35789999999888888777422 54 99999999999999999887642100 000
Q ss_pred -------CccCccccccccccCCCCcc-c---cccc--CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecc
Q 003809 422 -------KSSSAAGLTASVAKEPETGE-F---CIEA--GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAG 488 (794)
Q Consensus 422 -------~~ss~~gLt~~v~~d~~~g~-~---~~~~--Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG 488 (794)
.......+.++- ..+. . .++. -.-..+..-|++|||+++|+....++|+..||+-
T Consensus 84 C~~i~~g~h~D~~eldaas----~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-------- 151 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAAS----NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-------- 151 (618)
T ss_pred HHHHHcCCCCceeecCccc----ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC--------
Confidence 000000011100 0010 0 0000 0001123459999999999999999999998752
Q ss_pred eEEeecCceE-EEEecCCCCCCCCCCCCccCccc-ccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCC
Q 003809 489 IQATLNARTS-ILAAANPAGGRYDKSKPLKKHED-ALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGD 565 (794)
Q Consensus 489 ~~~~l~ar~s-iiAaaNP~~Gryd~~~~l~~~~~-~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~ 565 (794)
+..+. |++|++|.. . ..++..+-. ..-..++.+.+..++... ....-.+++++...|....
T Consensus 152 -----P~~~~fIL~Ttd~~k--i--l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s------- 215 (618)
T PRK14951 152 -----PEYLKFVLATTDPQK--V--PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA------- 215 (618)
T ss_pred -----CCCeEEEEEECCchh--h--hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-------
Confidence 22333 344444432 0 000110000 111245677777777654 3345567888887776521
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
.-++|.+.+++.-+.+. +...|+.++|.+.+
T Consensus 216 ---------~GslR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 216 ---------RGSMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred ---------CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 23567777665322222 24467777666543
No 155
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=8.8e-06 Score=93.56 Aligned_cols=215 Identities=13% Similarity=0.089 Sum_probs=117.0
Q ss_pred HHHhhhhcCC----ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee---
Q 003809 347 FNKIVDSIGP----TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT--- 419 (794)
Q Consensus 347 ~~~l~~si~p----~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~--- 419 (794)
|..|++-..| +|+||+.++..+.-++-.|... -.+||+||||+|||++++.+++.+.-....
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~-----------ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~ 72 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAA-----------HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQ 72 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCc-----------eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCC
Confidence 3444444444 6889999999887777666422 047899999999999999999875321100
Q ss_pred --cCC------cc--CccccccccccCCCCc-ccc---ccc-C-ceeecCCCeEEecccccCChhhHHHHHHHhhccEEE
Q 003809 420 --SGK------SS--SAAGLTASVAKEPETG-EFC---IEA-G-ALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTIS 483 (794)
Q Consensus 420 --~g~------~s--s~~gLt~~v~~d~~~g-~~~---~~~-G-al~lad~GIl~IDE~dk~~~~~~~~L~eame~~~is 483 (794)
+|. .. ....+.. +......| +.. .+. . .-..++..|++|||+++|+...+++|+..||+-
T Consensus 73 ~~c~~c~~C~~i~~~~~~d~~~-i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep--- 148 (451)
T PRK06305 73 EPCNQCASCKEISSGTSLDVLE-IDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP--- 148 (451)
T ss_pred CCCcccHHHHHHhcCCCCceEE-eeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC---
Confidence 000 00 0000000 00000000 000 000 0 001246679999999999999999999999862
Q ss_pred EeecceEEeecCceEEEEecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHh
Q 003809 484 ITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVAL 561 (794)
Q Consensus 484 i~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~l 561 (794)
+..+.+|.++|-.. .-..++..+-..+ -..++.+.+..++... +...-.+++++.+.|..+.
T Consensus 149 ----------~~~~~~Il~t~~~~---kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s--- 212 (451)
T PRK06305 149 ----------PQHVKFFLATTEIH---KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAA--- 212 (451)
T ss_pred ----------CCCceEEEEeCChH---hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---
Confidence 12344444444211 0011111111111 2346777888777643 4445568888888886531
Q ss_pred ccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 562 RRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 562 R~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
.-+.|.+.+++.-..+ ... ..|+.++|.+++
T Consensus 213 -------------~gdlr~a~~~Lekl~~---~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 213 -------------QGSLRDAESLYDYVVG---LFP-KSLDPDSVAKAL 243 (451)
T ss_pred -------------CCCHHHHHHHHHHHHH---hcc-CCcCHHHHHHHH
Confidence 1345666555443222 222 458888887665
No 156
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.39 E-value=1.4e-06 Score=106.10 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=56.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCcee---ecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALM---LADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~---lad~GIl~IDE~dk~~~ 467 (794)
++||+||||||||+|++++++.+...++.... ..+....... .+..+. ..+- .....|+||||+|.+.+
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~i~i~~----~~i~~~~~g~---~~~~l~-~lf~~a~~~~p~il~iDEid~l~~ 285 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYFISING----PEIMSKYYGE---SEERLR-EIFKEAEENAPSIIFIDEIDAIAP 285 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEec----HHHhcccccH---HHHHHH-HHHHHHHhcCCcEEEeehhhhhcc
Confidence 79999999999999999999988765543211 0000000000 000000 0011 11246999999987643
Q ss_pred -----------hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 468 -----------RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 468 -----------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
..+..|+..|+.-. -..++.+|+|+|+..
T Consensus 286 ~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn~~~ 325 (733)
T TIGR01243 286 KREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATNRPD 325 (733)
T ss_pred cccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecCChh
Confidence 24556777775321 123578899999753
No 157
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5.7e-06 Score=97.89 Aligned_cols=170 Identities=12% Similarity=0.105 Sum_probs=96.6
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCccee----ecCCc------
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVY----TSGKS------ 423 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g~~------ 423 (794)
+-+|+||+.+++.|.-++-.|.-. | +||+||||+|||++++.+++.+..... .+|.-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~------------hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVA------------HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 347899999999998888776422 4 599999999999999999988642110 01100
Q ss_pred --cCccccccccccCCCC--c--c--cccc-cC-ceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEee
Q 003809 424 --SSAAGLTASVAKEPET--G--E--FCIE-AG-ALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATL 493 (794)
Q Consensus 424 --ss~~gLt~~v~~d~~~--g--~--~~~~-~G-al~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l 493 (794)
.+..++. .-+..+ + + ...+ .. .-..++..|++|||+++|+...+++|+..||+-
T Consensus 83 ~~g~~~d~~---eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep------------- 146 (576)
T PRK14965 83 TEGRSVDVF---EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP------------- 146 (576)
T ss_pred hcCCCCCee---eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-------------
Confidence 0000000 000000 0 0 0000 00 012345679999999999999999999999862
Q ss_pred cCceEEE-EecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHH
Q 003809 494 NARTSIL-AAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVD 556 (794)
Q Consensus 494 ~ar~sii-AaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~ 556 (794)
+..+.+| +|++|.. . ..++..+-..+ -..++.+.+..++... +...-.+++++...|..
T Consensus 147 p~~~~fIl~t~~~~k--l--~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 147 PPHVKFIFATTEPHK--V--PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVAR 208 (576)
T ss_pred CCCeEEEEEeCChhh--h--hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 2344444 4444421 0 11111111111 1245677777776543 34455688888877765
No 158
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.38 E-value=2.6e-06 Score=98.41 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=24.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
++||+||||||||++++++++.+...+
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i 244 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRI 244 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhcccc
Confidence 699999999999999999999876543
No 159
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.37 E-value=5e-06 Score=87.46 Aligned_cols=176 Identities=14% Similarity=0.175 Sum_probs=92.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc----ceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR----SVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~----~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
+++|+||||||||+|++++++.+.. ..|..... .... ..+. ++. + ..-.++||||++.+.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~-----~~~~------~~~~-~~~--~--~~~dlliiDdi~~~~ 110 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK-----RAWF------VPEV-LEG--M--EQLSLVCIDNIECIA 110 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH-----Hhhh------hHHH-HHH--h--hhCCEEEEeChhhhc
Confidence 7999999999999999998875432 12221110 0000 0000 000 0 112489999999885
Q ss_pred h--hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCC-CCccCcc-----cccCccccHHHHHHHHHH
Q 003809 467 I--RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKS-KPLKKHE-----DALAPAFTTAQLKRYIAY 538 (794)
Q Consensus 467 ~--~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~-~~l~~~~-----~~~~~~~~~~~lr~yi~~ 538 (794)
. ..+..|+.++..-. . ..+.++|.|+|-.+..++.. ..+..+- -.+. +.+.+.+.+.+..
T Consensus 111 ~~~~~~~~lf~l~n~~~----e-------~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~-~~~~~~~~~~l~~ 178 (235)
T PRK08084 111 GDELWEMAIFDLYNRIL----E-------SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQ-PLSDEEKLQALQL 178 (235)
T ss_pred CCHHHHHHHHHHHHHHH----H-------cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeec-CCCHHHHHHHHHH
Confidence 4 33445544442210 0 01223444444322222111 1111000 0112 2345555555544
Q ss_pred -HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 539 -AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 539 -ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
|....-.+++++.++|... .+-++|.++.++.... .+.+.....||...+++++.|
T Consensus 179 ~a~~~~~~l~~~v~~~L~~~----------------~~~d~r~l~~~l~~l~-~~~l~~~~~it~~~~k~~l~~ 235 (235)
T PRK08084 179 RARLRGFELPEDVGRFLLKR----------------LDREMRTLFMTLDQLD-RASITAQRKLTIPFVKEILKL 235 (235)
T ss_pred HHHHcCCCCCHHHHHHHHHh----------------hcCCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHcC
Confidence 4444567899999988763 2345788888887643 344444456999999998753
No 160
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=7.1e-06 Score=96.53 Aligned_cols=202 Identities=12% Similarity=0.082 Sum_probs=113.8
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCccee----ecCC------ccC
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVY----TSGK------SSS 425 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g~------~ss 425 (794)
+|+||+.+++.|.-++..|... | +||+||||+|||++++.+++.+..... .+|. ...
T Consensus 17 diiGqe~iv~~L~~~i~~~~i~------------hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNKIA------------NAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HccCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 6899999999988888776422 4 899999999999999999998643210 1110 000
Q ss_pred ccccccccccCCC--Cc--cc-cc----ccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCc
Q 003809 426 AAGLTASVAKEPE--TG--EF-CI----EAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNAR 496 (794)
Q Consensus 426 ~~gLt~~v~~d~~--~g--~~-~~----~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar 496 (794)
...+.. +.-+.. .+ .. .+ ...+ ..++.-|++|||++.|+...+++|+..||+- |..
T Consensus 85 ~~~~dv-~~idgas~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~ 149 (563)
T PRK06647 85 DNSLDV-IEIDGASNTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPY 149 (563)
T ss_pred CCCCCe-EEecCcccCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCC
Confidence 000000 000000 01 00 00 0001 1345669999999999999999999998751 223
Q ss_pred eEEE-EecCCCCCCCCCCCCccCccc-ccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccc
Q 003809 497 TSIL-AAANPAGGRYDKSKPLKKHED-ALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVA 573 (794)
Q Consensus 497 ~sii-AaaNP~~Gryd~~~~l~~~~~-~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~ 573 (794)
+.+| +++++.. . ..++..+-. ..-..++.+.+..++...- ...-.+++++...|....
T Consensus 150 ~vfI~~tte~~k--L--~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s--------------- 210 (563)
T PRK06647 150 IVFIFATTEVHK--L--PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS--------------- 210 (563)
T ss_pred EEEEEecCChHH--h--HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---------------
Confidence 4444 4433311 0 011111101 1112356677777776543 345567888888886521
Q ss_pred cccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 574 YRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 574 ~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
.-++|.+.+++.-..+.+ ...++.++|.+++
T Consensus 211 -~GdlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 211 -TGSVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred -CCCHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 234677777665332222 2458888877765
No 161
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=8.3e-06 Score=94.44 Aligned_cols=205 Identities=16% Similarity=0.130 Sum_probs=116.4
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCccee----ecCC-------
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVY----TSGK------- 422 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~----~~g~------- 422 (794)
+-++.||+.+++.+.-++..+... | +||+||||+|||++++.+++.+..... .+|.
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~------------hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVS------------HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 346889999999988888776532 5 578999999999999999998642100 0110
Q ss_pred -ccCccccccccccCCCCccc---ccc--cCc-eeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecC
Q 003809 423 -SSSAAGLTASVAKEPETGEF---CIE--AGA-LMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 423 -~ss~~gLt~~v~~d~~~g~~---~~~--~Ga-l~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
..+..++.. +......|.- .+. ... -+.++..|++|||+++|+....++|+..|++- |.
T Consensus 83 ~~g~~~d~~e-idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-------------p~ 148 (486)
T PRK14953 83 DKGSFPDLIE-IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-------------PP 148 (486)
T ss_pred hcCCCCcEEE-EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-------------CC
Confidence 000011100 0000000100 000 000 02345679999999999999999999998753 22
Q ss_pred c-eEEEEecCCCCCCCCCCCCccCc-ccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCcc
Q 003809 496 R-TSILAAANPAGGRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRV 572 (794)
Q Consensus 496 r-~siiAaaNP~~Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~ 572 (794)
. +.|++++++.. .. .++..+ ....-.+++.+.+..|+... +...-.+++++...|.+..
T Consensus 149 ~~v~Il~tt~~~k--l~--~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s-------------- 210 (486)
T PRK14953 149 RTIFILCTTEYDK--IP--PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS-------------- 210 (486)
T ss_pred CeEEEEEECCHHH--HH--HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--------------
Confidence 2 34445444321 00 011100 01112346778888877653 3345567888888886521
Q ss_pred ccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 573 AYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 573 ~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
..++|.+.+++.-+.+. ....++.++|.+++
T Consensus 211 --~G~lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 211 --EGGMRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred --CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 13467777777654433 24468888888755
No 162
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.34 E-value=3.3e-06 Score=103.44 Aligned_cols=201 Identities=15% Similarity=0.215 Sum_probs=130.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecC--CccCccccccccccCCCCcccccccCceeec--CCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSG--KSSSAAGLTASVAKEPETGEFCIEAGALMLA--DNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g--~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la--d~GIl~IDE~dk~~ 466 (794)
.+||-|.||+|||.|..++|+..+....... ..+.-.+|+++-.--..+|+|...-..+..| +||.+++||++..+
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLaS 1624 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLAS 1624 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhhH
Confidence 6899999999999999999998776544211 1112234444433223567766554444444 79999999999999
Q ss_pred hhhHHHHHHHhhcc-EEEEeecceEEeecCceEEEEecCCCC---CCCCCCCCccCccccc-CccccHHHHHHHHHHHhc
Q 003809 467 IRDQVAIHEAMEQQ-TISITKAGIQATLNARTSILAAANPAG---GRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYAKT 541 (794)
Q Consensus 467 ~~~~~~L~eame~~-~isi~kaG~~~~l~ar~siiAaaNP~~---Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~ar~ 541 (794)
.+....|...++++ ...|..-.+....+.+|.|+||.||.. ||-.-.+++..+-.-+ -..++.+++ +.-|..
T Consensus 1625 QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi---~~Ia~~ 1701 (4600)
T COG5271 1625 QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDI---THIANK 1701 (4600)
T ss_pred HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchH---HHHHHh
Confidence 99999999999854 455665555666777899999999995 5554444443111100 112333333 344567
Q ss_pred cCCcCCHHHHHHHHHHHHHhccC----CCCCCCccccccCHHHHHHHHHHHHHHHHh
Q 003809 542 LKPKLSLEARKLLVDSYVALRRG----DTTPGSRVAYRMTVRQLEALIRLSEAIARS 594 (794)
Q Consensus 542 ~~P~ls~ea~~~L~~~Y~~lR~~----~~~~~~~~~~~iT~R~LesliRlseA~Arl 594 (794)
..|.+.++-+-+++++...|... ...+...++|-++.|.-.+++.+---...+
T Consensus 1702 ~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~llNq~~~~ 1758 (4600)
T COG5271 1702 MYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLILLNQVGTL 1758 (4600)
T ss_pred hCCccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHHHHHhhccCcc
Confidence 88999999999998887765432 111223367888888766665554333333
No 163
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.33 E-value=1.8e-07 Score=88.00 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=59.4
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcceeecCCccCc---cccccccccCCCCcccccccCceeecCCCeEEecccccCChh
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSA---AGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR 468 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~---~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~ 468 (794)
|||+||||||||++++.+++.+...++........ .+-+....+ .+..++. ..+..+|+||||+|.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~-----~~~~~~~--~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIR-----DFFKKAK--KSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHH-----HHHHHHH--HTSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccc-----ccccccc--ccccceeeeeccchhcccc
Confidence 69999999999999999999987655432111110 000000000 0000000 0002589999999998887
Q ss_pred h-----------HHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 469 D-----------QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 469 ~-----------~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
. ...|...|+...- .+.++.+|+|+|..
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~~----------~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPSS----------KNSRVIVIATTNSP 112 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTTT----------TSSSEEEEEEESSG
T ss_pred cccccccccccccceeeeccccccc----------ccccceeEEeeCCh
Confidence 6 6677777754431 13468999999963
No 164
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.32 E-value=4.7e-06 Score=88.60 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=68.1
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc-ceeecCCc----cCcccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR-SVYTSGKS----SSAAGLTA 431 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~-~~~~~g~~----ss~~gLt~ 431 (794)
++.|++.+..+|.-++.++... |.||+||||||||..++++++.+.. ..+.++-- |---|..
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp------------~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis- 103 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILP------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS- 103 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCc------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-
Confidence 5789999999999888874322 9999999999999999998887543 22222211 1111111
Q ss_pred ccccCCCCcccccccCc------eeecCCCeEEecccccCChhhHHHHHHHhhc
Q 003809 432 SVAKEPETGEFCIEAGA------LMLADNGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 432 ~v~~d~~~g~~~~~~Ga------l~lad~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
+++... ..|..--.. -+...--|++|||.|.|..+.|.+|...||+
T Consensus 104 -vvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 104 -VVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED 155 (346)
T ss_pred -chhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc
Confidence 111110 000000000 0111124899999999999999999999986
No 165
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.2e-06 Score=105.57 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=103.9
Q ss_pred hHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCccc-ccceeEEEeCCCcchHHHHHHHHHhhCCcc---eeec-
Q 003809 346 FFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINL-RGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VYTS- 420 (794)
Q Consensus 346 i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~-Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~- 420 (794)
.+..|.+.+--.|+||+++-.||.-++..... |..- .++.-+||.||.|+|||.|+++++.++-.+ ....
T Consensus 552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~-----gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD 626 (898)
T KOG1051|consen 552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSRA-----GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD 626 (898)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhhhc-----ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec
Confidence 35567777888899999999999888876542 2222 377899999999999999999999985221 1110
Q ss_pred --------CCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEe
Q 003809 421 --------GKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQAT 492 (794)
Q Consensus 421 --------g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~ 492 (794)
....+..|+.+.- .+|. -.+++-.....|+++|||++.++..++.|+++|+.|+++-.. |....
T Consensus 627 mse~~evskligsp~gyvG~e----~gg~---LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~-Gr~Vd 698 (898)
T KOG1051|consen 627 MSEFQEVSKLIGSPPGYVGKE----EGGQ---LTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSH-GREVD 698 (898)
T ss_pred hhhhhhhhhccCCCcccccch----hHHH---HHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCC-CcEee
Confidence 1112222222211 1111 123344445679999999999999999999999999998764 66666
Q ss_pred ecCceEEEEecCCCC
Q 003809 493 LNARTSILAAANPAG 507 (794)
Q Consensus 493 l~ar~siiAaaNP~~ 507 (794)
+. ++.||.|+|-..
T Consensus 699 ~k-N~I~IMTsn~~~ 712 (898)
T KOG1051|consen 699 FK-NAIFIMTSNVGS 712 (898)
T ss_pred cc-ceEEEEecccch
Confidence 65 799999999643
No 166
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2.2e-05 Score=87.98 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=112.5
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeec-CC--ccCcccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTS-GK--SSSAAGLTASV 433 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~-g~--~ss~~gLt~~v 433 (794)
+|.||+.+++.+.-.+-.|... -++||+||||+|||++++.+++.+....... +. ......+.+.-
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~~-----------~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~ 86 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHLA-----------QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS 86 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCCC-----------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc
Confidence 6789999999888887766421 1799999999999999999998764321110 00 00000010000
Q ss_pred ccCCCCcccccc-cCce-eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCC
Q 003809 434 AKEPETGEFCIE-AGAL-MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYD 511 (794)
Q Consensus 434 ~~d~~~g~~~~~-~Gal-~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd 511 (794)
......-...++ .... ..++..+++|||++.++...++.|+..|++- +..+.+|.++|... +..
T Consensus 87 ~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-------------~~~~~~Il~~~~~~-kl~ 152 (367)
T PRK14970 87 NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-------------PAHAIFILATTEKH-KII 152 (367)
T ss_pred CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCceEEEEEeCCcc-cCC
Confidence 000000000000 0001 2345679999999999998889999888652 22344444444211 010
Q ss_pred CCCCccCccccc-CccccHHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHH
Q 003809 512 KSKPLKKHEDAL-APAFTTAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSE 589 (794)
Q Consensus 512 ~~~~l~~~~~~~-~~~~~~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlse 589 (794)
.++..+-..+ .+.++.+.+..++.. ++...-.+++++.+.|... .+-+.|.+.+.+.-..
T Consensus 153 --~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~----------------~~gdlr~~~~~lekl~ 214 (367)
T PRK14970 153 --PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK----------------ADGALRDALSIFDRVV 214 (367)
T ss_pred --HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh----------------CCCCHHHHHHHHHHHH
Confidence 0111011111 234566777777654 3444556899998888762 1134566655554322
Q ss_pred HHHHhcCCCCcCHHHHHHHHH
Q 003809 590 AIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 590 A~Arl~~~~~V~~~dv~eAi~ 610 (794)
..+ ... |+.++|..++.
T Consensus 215 ~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 215 TFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred Hhc---CCC-CCHHHHHHHhC
Confidence 222 333 88888887654
No 167
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1e-05 Score=96.49 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=110.8
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcceee-----cCCccCccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVYT-----SGKSSSAAGLT 430 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~~-----~g~~ss~~gLt 430 (794)
+|.||+.+++.|.-++..|.-. | +||+||||+|||++|+.+++.+.-.... ++.-.+..|..
T Consensus 19 dIiGQe~~v~~L~~aI~~~rl~------------HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~ 86 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNKIS------------HAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS 86 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence 6889999999988888776422 4 5899999999999999999875432110 00000000000
Q ss_pred cccc-cCCC--Cccc----ccc-cCce-eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceE-EE
Q 003809 431 ASVA-KEPE--TGEF----CIE-AGAL-MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTS-IL 500 (794)
Q Consensus 431 ~~v~-~d~~--~g~~----~~~-~Gal-~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~s-ii 500 (794)
.-+. -+.. .+.- .++ .... ..++..|++|||++.|+...+++|+..||+- |..+. |+
T Consensus 87 ~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifIL 153 (725)
T PRK07133 87 LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFIL 153 (725)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEE
Confidence 0000 0000 0000 000 0001 1245569999999999999999999999853 22333 44
Q ss_pred EecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCH
Q 003809 501 AAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTV 578 (794)
Q Consensus 501 AaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~ 578 (794)
+|++|.. .. .++..+-..+ -..++.+.+..++... ....-.++++|...|.... ..++
T Consensus 154 aTte~~K--Ll--~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS----------------~Gsl 213 (725)
T PRK07133 154 ATTEVHK--IP--LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLS----------------SGSL 213 (725)
T ss_pred EcCChhh--hh--HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------------CCCH
Confidence 4444421 10 0111011111 1246677777777643 2334566777777665421 2345
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 579 RQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 579 R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
|.+.+++.-..+.+ ...|+.++|.+++
T Consensus 214 R~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 214 RDALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 66666655433322 3347777777654
No 168
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=8e-06 Score=96.80 Aligned_cols=173 Identities=11% Similarity=0.089 Sum_probs=98.1
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcce------------eec
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSV------------YTS 420 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~------------~~~ 420 (794)
-+-+|+||+.+++.|.-++..|.-. | +||+||||+|||++++.+++.+.-.. ..+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~------------ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVG------------HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCC------------eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 3346889999999888877776422 4 89999999999999999998763211 001
Q ss_pred CCcc------CccccccccccCC--CCc-ccc------cccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEe
Q 003809 421 GKSS------SAAGLTASVAKEP--ETG-EFC------IEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISIT 485 (794)
Q Consensus 421 g~~s------s~~gLt~~v~~d~--~~g-~~~------~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~ 485 (794)
|.-. ....+.. ..-+. ..+ +-. +.-+. +.++.-|++|||+++|+...+++|+..||+=
T Consensus 82 g~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~e~~~~~P-~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP----- 154 (620)
T PRK14954 82 GECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLRENVRYGP-QKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP----- 154 (620)
T ss_pred ccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEeChhhcCHHHHHHHHHHHhCC-----
Confidence 1100 0000000 00010 000 000 00011 3456679999999999999999999999861
Q ss_pred ecceEEeecCce-EEEEecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHHH
Q 003809 486 KAGIQATLNART-SILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVDS 557 (794)
Q Consensus 486 kaG~~~~l~ar~-siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~~ 557 (794)
+..+ .|++|.++. + -..++..+-..+ -..++.+.+..|+...- ...-.+++++.+.|...
T Consensus 155 --------p~~tv~IL~t~~~~--k--Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 155 --------PPHAIFIFATTELH--K--IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred --------CCCeEEEEEeCChh--h--hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 1223 333443321 0 001111111111 13467788888886543 34556899988888763
No 169
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4.7e-06 Score=93.08 Aligned_cols=200 Identities=20% Similarity=0.229 Sum_probs=123.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc------eeecC-CccCccccccccc----cCCCCcccccc-----cCcee-ecC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS------VYTSG-KSSSAAGLTASVA----KEPETGEFCIE-----AGALM-LAD 453 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~------~~~~g-~~ss~~gLt~~v~----~d~~~g~~~~~-----~Gal~-lad 453 (794)
|++++|+||||||..++++.+.+... +|... ...+.......+. .-|.+|.-..+ ...+. ...
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCC
Confidence 79999999999999999999884332 34321 1112221211111 11222211110 00010 112
Q ss_pred CCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC--CCCCCCCCcc-CcccccCccccHH
Q 003809 454 NGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG--GRYDKSKPLK-KHEDALAPAFTTA 530 (794)
Q Consensus 454 ~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~--Gryd~~~~l~-~~~~~~~~~~~~~ 530 (794)
.-|+.|||+|.|-......|+....... ....++++++.+|-.. ..+++...-. ...+..-++++.+
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~----------~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~ 193 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPG----------ENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAE 193 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhcc----------ccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHH
Confidence 2388999999988876656666553221 1156789999999763 2222222111 1223456788999
Q ss_pred HHHHHHHHHhc--c-CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Q 003809 531 QLKRYIAYAKT--L-KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRV 607 (794)
Q Consensus 531 ~lr~yi~~ar~--~-~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~e 607 (794)
+|+..+..-.. + ...+++++.+++......- .-..|....++|.|--+|.-+.+..|+++||..
T Consensus 194 el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~-------------~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~ 260 (366)
T COG1474 194 ELYDILRERVEEGFSAGVIDDDVLKLIAALVAAE-------------SGDARKAIDILRRAGEIAEREGSRKVSEDHVRE 260 (366)
T ss_pred HHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHc-------------CccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Confidence 98887765432 3 5678888888776644321 115799999999999999999999999999999
Q ss_pred HHHHHh
Q 003809 608 AVRLLK 613 (794)
Q Consensus 608 Ai~L~~ 613 (794)
|..-.+
T Consensus 261 a~~~~~ 266 (366)
T COG1474 261 AQEEIE 266 (366)
T ss_pred HHHHhh
Confidence 954443
No 170
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.29 E-value=4.4e-06 Score=102.84 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=39.2
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
....-...++|++..-..++-.|..+... |++|+||||||||++++.+++.+.
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r~~~~------------n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLRRRQN------------NPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhcCCcC------------ceeEECCCCCCHHHHHHHHHHHHh
Confidence 33344456889888766666555554322 899999999999999999998763
No 171
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.6e-06 Score=87.69 Aligned_cols=177 Identities=19% Similarity=0.197 Sum_probs=100.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeec---CCCeEEecccccC--
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDKM-- 465 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~-- 465 (794)
.+||+||||||||.|+++++....-.+... +.+.|....+. .|.. +-...++.| ...|+|.||||.+
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firv----sgselvqk~ig---egsr-mvrelfvmarehapsiifmdeidsigs 254 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV----SGSELVQKYIG---EGSR-MVRELFVMAREHAPSIIFMDEIDSIGS 254 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEe----chHHHHHHHhh---hhHH-HHHHHHHHHHhcCCceEeeeccccccc
Confidence 589999999999999999998765433321 22222222111 1111 111123333 2579999999965
Q ss_pred ---------ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccCccc
Q 003809 466 ---------DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALAPAF 527 (794)
Q Consensus 466 ---------~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~~ 527 (794)
+.+.|..+++.+.|-. |..++- ++-+|.|+|.. +||.|+...+.
T Consensus 255 ~r~e~~~ggdsevqrtmlellnqld------gfeatk--nikvimatnridild~allrpgridrkiefp---------- 316 (404)
T KOG0728|consen 255 SRVESGSGGDSEVQRTMLELLNQLD------GFEATK--NIKVIMATNRIDILDPALLRPGRIDRKIEFP---------- 316 (404)
T ss_pred ccccCCCCccHHHHHHHHHHHHhcc------cccccc--ceEEEEeccccccccHhhcCCCcccccccCC----------
Confidence 4456778888886543 444443 47788899965 36665555444
Q ss_pred cHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCC------CCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcC
Q 003809 528 TTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDT------TPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVH 601 (794)
Q Consensus 528 ~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~------~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~ 601 (794)
.-+++|+-.|... ..|+... ...+....+.|...+.++.--|--.|--+-+-.||
T Consensus 317 -----------------~p~e~ar~~ilki--hsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvt 377 (404)
T KOG0728|consen 317 -----------------PPNEEARLDILKI--HSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVT 377 (404)
T ss_pred -----------------CCCHHHHHHHHHH--hhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcccc
Confidence 2222222222211 0111100 00011112345566777777777777777778899
Q ss_pred HHHHHHHHHHH
Q 003809 602 PRHVRVAVRLL 612 (794)
Q Consensus 602 ~~dv~eAi~L~ 612 (794)
.+|.+-|+.-.
T Consensus 378 qedfemav~kv 388 (404)
T KOG0728|consen 378 QEDFEMAVAKV 388 (404)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 172
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2e-05 Score=93.34 Aligned_cols=172 Identities=13% Similarity=0.121 Sum_probs=95.8
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee-ec-CCccCcccc--ccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY-TS-GKSSSAAGL--TAS 432 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~-~~-g~~ss~~gL--t~~ 432 (794)
+|+||+.+++.|.-++..|... . .+||+||||+|||++++.+++.+.-... .. |......|. .+.
T Consensus 25 dliGq~~~v~~L~~~~~~gri~---h--------a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGRIA---Q--------AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ 93 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCCCC---c--------eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence 6889999999988887776422 0 5999999999999999999997532110 00 000000000 000
Q ss_pred ---------c-ccCC--CCcccc-------cccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEee
Q 003809 433 ---------V-AKEP--ETGEFC-------IEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATL 493 (794)
Q Consensus 433 ---------v-~~d~--~~g~~~-------~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l 493 (794)
+ .-++ ..|.-. ..... +.+...|++|||++.|+....++|+..||+-
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP------------- 159 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLSTAAFNALLKTLEEP------------- 159 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-------------
Confidence 0 0000 011000 01111 2456679999999999999999999999852
Q ss_pred cCceEEEEecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHH
Q 003809 494 NARTSILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVD 556 (794)
Q Consensus 494 ~ar~siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~ 556 (794)
+..+.+|.+++-... . ..++..+-..+ -..++.+.+.+++... +.-.-.+++++.+.|..
T Consensus 160 p~~~~fIl~tte~~k-l--l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 160 PPHVKFIFATTEIRK-V--PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR 221 (598)
T ss_pred CCCeEEEEEeCChhh-h--hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 223333333332110 0 00111111111 1245677777777654 33455788888877765
No 173
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=98.26 E-value=2e-05 Score=88.70 Aligned_cols=250 Identities=22% Similarity=0.267 Sum_probs=156.5
Q ss_pred cCCCHHHHHHHHHHHcCCchHHHhhhhcC--CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHH
Q 003809 327 HQFTTEEIDEIQRMRNAPDFFNKIVDSIG--PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQ 404 (794)
Q Consensus 327 ~~~t~~e~~~i~~~~~~~~i~~~l~~si~--p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~ 404 (794)
..||.+|| .+.|+.|+- |+-+.. ..|..+|.-|+--+.+ +.|++=.||.|||||.
T Consensus 167 ~~FT~eEW------------iD~LlrS~G~eP~~~~~-r~Kl~~L~RLiPlVE~----------N~NliELgPrGTGKS~ 223 (457)
T PF13337_consen 167 KEFTTEEW------------IDLLLRSIGYEPSGFSE-RQKLLLLARLIPLVER----------NYNLIELGPRGTGKSY 223 (457)
T ss_pred HhcCHHHH------------HHHHHHhcCCCccccCH-HHHHHHHHhHHHhccc----------ccceEEEcCCCCCcee
Confidence 45666665 344556653 333333 5677777666665543 3599999999999999
Q ss_pred HHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC---hhhHHHHHHHhhccE
Q 003809 405 FLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD---IRDQVAIHEAMEQQT 481 (794)
Q Consensus 405 Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~---~~~~~~L~eame~~~ 481 (794)
+-+ .++|.+...+|-..|.+-|+.- ..++ +.|.+...| ++++||+..++ ++....|...|++|.
T Consensus 224 vy~---eiSp~~~liSGG~~T~A~LFyn----~~~~----~~GlV~~~D--~VafDEv~~i~f~d~d~i~imK~YMesG~ 290 (457)
T PF13337_consen 224 VYK---EISPYGILISGGQVTVAKLFYN----MSTG----QIGLVGRWD--VVAFDEVAGIKFKDKDEIQIMKDYMESGS 290 (457)
T ss_pred ehh---hcCcccEEEECCCcchHHheee----ccCC----cceeeeecc--EEEEEeccCcccCChHHHHHHHHHHhccc
Confidence 855 4566677777777777665542 2223 456665544 78999999665 445567888899999
Q ss_pred EEEeecceEEeecCceEEEEecCCCC--CCCCCCCCccCcccccCccc-cHHHHHHHHHHHhc-cCCcCCHHH-------
Q 003809 482 ISITKAGIQATLNARTSILAAANPAG--GRYDKSKPLKKHEDALAPAF-TTAQLKRYIAYAKT-LKPKLSLEA------- 550 (794)
Q Consensus 482 isi~kaG~~~~l~ar~siiAaaNP~~--Gryd~~~~l~~~~~~~~~~~-~~~~lr~yi~~ar~-~~P~ls~ea------- 550 (794)
.+..+ .+..+.++++-..|... ........+. ..+.+.+ +.++|-|+-.|.-- --|+++++.
T Consensus 291 fsRG~----~~i~a~as~vf~GNi~~~v~~~~~~~~lf---~~lP~~~~DsAflDRiH~~iPGWeiPk~~~e~~t~~~gl 363 (457)
T PF13337_consen 291 FSRGK----EEINADASMVFVGNINQSVENMLKTSHLF---EPLPEEMRDSAFLDRIHGYIPGWEIPKIRPEMFTNGYGL 363 (457)
T ss_pred eeecc----cccccceeEEEEcCcCCcchhccccchhh---hhcCHHHHHHHHHhHhheeccCccccccCHHHccCCcee
Confidence 98764 35667777777777542 1111111111 1111111 45566666655542 345555543
Q ss_pred -HHHHHHHHHHhccCCCCC----CCccccccCHHHHHHHHHHHHHHHHhcC-CCCcCHHHHHHHHHHHhhhcccc
Q 003809 551 -RKLLVDSYVALRRGDTTP----GSRVAYRMTVRQLEALIRLSEAIARSHL-ETQVHPRHVRVAVRLLKTSVISV 619 (794)
Q Consensus 551 -~~~L~~~Y~~lR~~~~~~----~~~~~~~iT~R~LesliRlseA~Arl~~-~~~V~~~dv~eAi~L~~~s~~~~ 619 (794)
.+++.++...||..+-.. .-+-.-.++.|.-.++-|++-++.||-. ...++.++++++++.--+.-..|
T Consensus 364 ~~Dy~aE~l~~LR~~~~~~~~~~~~~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~~A~e~R~rV 438 (457)
T PF13337_consen 364 IVDYFAEILHELRKQSYSDAVDKYFKLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLRPALEMRRRV 438 (457)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhhEeeCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 457777777888764211 0112234789999999999999888765 45899999998776654443333
No 174
>PRK04195 replication factor C large subunit; Provisional
Probab=98.25 E-value=1.6e-05 Score=92.45 Aligned_cols=168 Identities=20% Similarity=0.190 Sum_probs=90.7
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCc-cCcccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKS-SSAAGLTASVAK 435 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~-ss~~gLt~~v~~ 435 (794)
++.|++.++..+.-.+-.... |. ..-++||+||||||||++++++++.+...+...... .........+..
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~-----g~---~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~ 86 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLK-----GK---PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAG 86 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhc-----CC---CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHH
Confidence 577888887766554432110 00 012899999999999999999999886543321110 000000000000
Q ss_pred CCCCcccccccCceeecCCCeEEecccccCCh----hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCC
Q 003809 436 EPETGEFCIEAGALMLADNGICCIDEFDKMDI----RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYD 511 (794)
Q Consensus 436 d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~----~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd 511 (794)
. ......+.-....+++|||+|.+.. ....+|+..|+.. +..+|.++|... .
T Consensus 87 ~------~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~---------------~~~iIli~n~~~---~ 142 (482)
T PRK04195 87 E------AATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA---------------KQPIILTANDPY---D 142 (482)
T ss_pred H------hhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC---------------CCCEEEeccCcc---c
Confidence 0 0001111112467999999999876 3466777777532 234555666442 2
Q ss_pred CCC-CccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHH
Q 003809 512 KSK-PLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVD 556 (794)
Q Consensus 512 ~~~-~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~ 556 (794)
... +++.+...+ -+.++...+..++... +.....+++++.+.|.+
T Consensus 143 ~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~ 190 (482)
T PRK04195 143 PSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAE 190 (482)
T ss_pred cchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 222 333111111 2345666666666543 33455688888888876
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.22 E-value=8e-06 Score=98.93 Aligned_cols=211 Identities=16% Similarity=0.171 Sum_probs=103.8
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC-----Cc-----ceeecCCccCc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV-----PR-----SVYTSGKSSSA 426 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~-----p~-----~~~~~g~~ss~ 426 (794)
.++|.+..-..++-.|..... -|+||+||||||||.+++.++... |. .++.. ..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~------------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----~~ 250 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRK------------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----DI 250 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCC------------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----cH
Confidence 477877665555554544321 289999999999999999999753 11 11110 00
Q ss_pred cccccccccCCCCccccccc----CceeecCCCeEEecccccC------Ch---hhHHHHHHHhhccEEEEeecceEEee
Q 003809 427 AGLTASVAKEPETGEFCIEA----GALMLADNGICCIDEFDKM------DI---RDQVAIHEAMEQQTISITKAGIQATL 493 (794)
Q Consensus 427 ~gLt~~v~~d~~~g~~~~~~----Gal~lad~GIl~IDE~dk~------~~---~~~~~L~eame~~~isi~kaG~~~~l 493 (794)
..+.+ .....|+|.-.- ..+..+.++|+||||++.+ +. +..+.|..++..+
T Consensus 251 ~~lla---G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g------------- 314 (758)
T PRK11034 251 GSLLA---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG------------- 314 (758)
T ss_pred HHHhc---ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-------------
Confidence 01111 111122221111 1112245789999999966 11 1223345555433
Q ss_pred cCceEEEEecCCCC-CCC-CCCCCccCc-ccccCccccHHH----HHHHH-HHHhccCCcCCHHHHHHHHHHHHHhccCC
Q 003809 494 NARTSILAAANPAG-GRY-DKSKPLKKH-EDALAPAFTTAQ----LKRYI-AYAKTLKPKLSLEARKLLVDSYVALRRGD 565 (794)
Q Consensus 494 ~ar~siiAaaNP~~-Gry-d~~~~l~~~-~~~~~~~~~~~~----lr~yi-~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~ 565 (794)
+..+|||+|+.. .+| .....+..+ ....-++.+.+. |+.+. .|.......++++|...+++.-...
T Consensus 315 --~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry---- 388 (758)
T PRK11034 315 --KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY---- 388 (758)
T ss_pred --CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc----
Confidence 467888988753 111 111112111 111111223332 33322 2222345567887776655432211
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhcC----CCCcCHHHHHHHHHH
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSHL----ETQVHPRHVRVAVRL 611 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~~----~~~V~~~dv~eAi~L 611 (794)
. +.+.-|.....++.-|.|.+++.- ...|+..|+.+.+.-
T Consensus 389 i------~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 389 I------NDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_pred c------cCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHH
Confidence 0 112335566667766666555422 345788888776643
No 176
>PRK06893 DNA replication initiation factor; Validated
Probab=98.20 E-value=1.3e-05 Score=83.89 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=93.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC----CcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV----PRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~----p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
.++|+||||||||+|++++++.+ ....|.....+. ... .. .++ .+.+..++||||++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--~~~---------~~-~~~----~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--YFS---------PA-VLE----NLEQQDLVCLDDLQAVI 104 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--hhh---------HH-HHh----hcccCCEEEEeChhhhc
Confidence 57999999999999999999764 233333211000 000 00 000 11234699999999874
Q ss_pred --hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCC-CCccCc-----ccccCccccHHHHHHHHHH
Q 003809 467 --IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKS-KPLKKH-----EDALAPAFTTAQLKRYIAY 538 (794)
Q Consensus 467 --~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~-~~l~~~-----~~~~~~~~~~~~lr~yi~~ 538 (794)
...+..|+..++...- . ....++.|+|-.+..++.. ..+..+ .-.+ +..+.+.....+..
T Consensus 105 ~~~~~~~~l~~l~n~~~~----~-------~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l-~~pd~e~~~~iL~~ 172 (229)
T PRK06893 105 GNEEWELAIFDLFNRIKE----Q-------GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQL-NDLTDEQKIIVLQR 172 (229)
T ss_pred CChHHHHHHHHHHHHHHH----c-------CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeC-CCCCHHHHHHHHHH
Confidence 3334567776653210 0 1123344444332222211 111100 0011 23445555555432
Q ss_pred H-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 539 A-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 539 a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
. ....-.+++++.++|... .+-++|.|++++..-. .+.+.-...||...|++++.
T Consensus 173 ~a~~~~l~l~~~v~~~L~~~----------------~~~d~r~l~~~l~~l~-~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 173 NAYQRGIELSDEVANFLLKR----------------LDRDMHTLFDALDLLD-KASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHcCCCCCHHHHHHHHHh----------------ccCCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHhc
Confidence 2 234567899988888752 2345788888877544 34444334799999998864
No 177
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.1e-06 Score=96.16 Aligned_cols=145 Identities=19% Similarity=0.155 Sum_probs=84.6
Q ss_pred ceechhhHHHHHHHHHhCCccc-ccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHK-LTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAK 435 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~-~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~ 435 (794)
+|.|..++|+++.-.+.-...- .......+|-.-+|||+||||||||.|+.+++...+-.+... -+..|....+.
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv----KGPElL~KyIG 743 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV----KGPELLSKYIG 743 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe----cCHHHHHHHhc
Confidence 5788889999887666544321 122334566666899999999999999999999877655431 12223332221
Q ss_pred CCCCcccccccCceeecCCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEeecCceEEEEecC
Q 003809 436 EPETGEFCIEAGALMLADNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNARTSILAAAN 504 (794)
Q Consensus 436 d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaN 504 (794)
..+.+-.-+-.-| -.|..+|+|.||||.+.|+ ..+.|+.-|+--. .+. .+.|+||+.
T Consensus 744 aSEq~vR~lF~rA-~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E----------gl~-GV~i~aaTs 811 (952)
T KOG0735|consen 744 ASEQNVRDLFERA-QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE----------GLD-GVYILAATS 811 (952)
T ss_pred ccHHHHHHHHHHh-hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc----------ccc-eEEEEEecC
Confidence 1111100000000 1234589999999977654 3456777664211 122 355666665
Q ss_pred CC---------CCCCCCCCCcc
Q 003809 505 PA---------GGRYDKSKPLK 517 (794)
Q Consensus 505 P~---------~Gryd~~~~l~ 517 (794)
.+ +||+|+..-+.
T Consensus 812 RpdliDpALLRpGRlD~~v~C~ 833 (952)
T KOG0735|consen 812 RPDLIDPALLRPGRLDKLVYCP 833 (952)
T ss_pred CccccCHhhcCCCccceeeeCC
Confidence 43 48887766555
No 178
>PRK06620 hypothetical protein; Validated
Probab=98.18 E-value=2.7e-05 Score=80.85 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=89.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
.++|+||||+|||+|++++++.... .+.... .. . .. ......++||||++.+.....
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~~~-------~~----~---~~--------~~~~~d~lliDdi~~~~~~~l 102 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNA-YIIKDI-------FF----N---EE--------ILEKYNAFIIEDIENWQEPAL 102 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCC-EEcchh-------hh----c---hh--------HHhcCCEEEEeccccchHHHH
Confidence 5899999999999999998876532 222100 00 0 00 012346899999997643222
Q ss_pred HHHHHHh-hccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCcc-----cccCccccHHHHHHHHHHHh-ccC
Q 003809 471 VAIHEAM-EQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHE-----DALAPAFTTAQLKRYIAYAK-TLK 543 (794)
Q Consensus 471 ~~L~eam-e~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~-----~~~~~~~~~~~lr~yi~~ar-~~~ 543 (794)
-.++..+ |+|. ..+++++.|++ .+.- ..+..+- -.+. +.+.+.++..+..+. ...
T Consensus 103 f~l~N~~~e~g~---------------~ilits~~~p~-~l~l-~~L~SRl~~gl~~~l~-~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 103 LHIFNIINEKQK---------------YLLLTSSDKSR-NFTL-PDLSSRIKSVLSILLN-SPDDELIKILIFKHFSISS 164 (214)
T ss_pred HHHHHHHHhcCC---------------EEEEEcCCCcc-ccch-HHHHHHHhCCceEeeC-CCCHHHHHHHHHHHHHHcC
Confidence 2222222 4433 23444444333 1111 1111000 1122 234555555554332 244
Q ss_pred CcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 544 PKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 544 P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
-.+++++.++|.... +-++|.++.++....+.|.... ..||...+++++
T Consensus 165 l~l~~ev~~~L~~~~----------------~~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 165 VTISRQIIDFLLVNL----------------PREYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHHHHc----------------cCCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 568999999987632 3357888888887666565555 469999998875
No 179
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.18 E-value=1.6e-05 Score=86.96 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=70.3
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEE-eCCCcchHHHHHHHHHhhCCcceee-cCCccCccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCI-VGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSSAAGLTASVA 434 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLL-vG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss~~gLt~~v~ 434 (794)
++.|++.++..+.-.+-.|... |++| +||||+|||++++++++.....++. .... .. . ...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~------------~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~---~~-~-~~i 84 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGRIP------------NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD---CR-I-DFV 84 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCCCC------------eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc---cc-H-HHH
Confidence 5788998888776666554321 5555 8999999999999999876443322 1111 01 0 001
Q ss_pred cCCCCcccccccCceeecCCCeEEecccccC-ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 435 KEPETGEFCIEAGALMLADNGICCIDEFDKM-DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 435 ~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~-~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
++. -..+. .... ..+...+++|||++.+ ....+..|...|+.. +.++.+|.++|..
T Consensus 85 ~~~-l~~~~-~~~~-~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~ 141 (316)
T PHA02544 85 RNR-LTRFA-STVS-LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNK 141 (316)
T ss_pred HHH-HHHHH-Hhhc-ccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCCh
Confidence 100 00010 0000 1245689999999999 666777888878742 2356777888753
No 180
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.18 E-value=8.7e-06 Score=100.36 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=36.2
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
..|+|++...+.++-.|...... |++|+||||||||.+++.++....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~------------n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN------------NPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC------------CeEEECCCCCCHHHHHHHHHHHHH
Confidence 34889888777766555543322 899999999999999999988753
No 181
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.7e-06 Score=90.82 Aligned_cols=186 Identities=17% Similarity=0.224 Sum_probs=104.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeec---CCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~ 467 (794)
.|+|+|+||||||.||+++++.....+... ....|..... ..|.. +-.-.+-.| ...|+||||||...-
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRv----vGseLiQkyl---GdGpk-lvRqlF~vA~e~apSIvFiDEIdAiGt 292 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRV----VGSELIQKYL---GDGPK-LVRELFRVAEEHAPSIVFIDEIDAIGT 292 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhh----hhHHHHHHHh---ccchH-HHHHHHHHHHhcCCceEEeehhhhhcc
Confidence 589999999999999999998643221110 0111111111 11110 000011112 246999999995432
Q ss_pred -----------hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccCccc
Q 003809 468 -----------RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALAPAF 527 (794)
Q Consensus 468 -----------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~~ 527 (794)
+.|..+++.+.|-. |... .-++-||.|+|.+ +||.|+...+. .
T Consensus 293 KRyds~SggerEiQrtmLELLNQld------GFds--rgDvKvimATnrie~LDPaLiRPGrIDrKIef~---------~ 355 (440)
T KOG0726|consen 293 KRYDSNSGGEREIQRTMLELLNQLD------GFDS--RGDVKVIMATNRIETLDPALIRPGRIDRKIEFP---------L 355 (440)
T ss_pred ccccCCCccHHHHHHHHHHHHHhcc------Cccc--cCCeEEEEecccccccCHhhcCCCccccccccC---------C
Confidence 35667888886543 3322 2368899999976 47777766655 3
Q ss_pred cHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Q 003809 528 TTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRV 607 (794)
Q Consensus 528 ~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~e 607 (794)
+.+.-++.|--...-+-.|.++.- + +-+...+ -.+|...+.++.--|--+|--..+..|+.+|.+.
T Consensus 356 pDe~TkkkIf~IHTs~Mtl~~dVn--l-e~li~~k-----------ddlSGAdIkAictEaGllAlRerRm~vt~~DF~k 421 (440)
T KOG0726|consen 356 PDEKTKKKIFQIHTSRMTLAEDVN--L-EELIMTK-----------DDLSGADIKAICTEAGLLALRERRMKVTMEDFKK 421 (440)
T ss_pred CchhhhceeEEEeecccchhcccc--H-HHHhhcc-----------cccccccHHHHHHHHhHHHHHHHHhhccHHHHHH
Confidence 444444433222211122222110 0 1111111 1245677788888888888888888999999999
Q ss_pred HHHHHhhh
Q 003809 608 AVRLLKTS 615 (794)
Q Consensus 608 Ai~L~~~s 615 (794)
|.+-...+
T Consensus 422 a~e~V~~~ 429 (440)
T KOG0726|consen 422 AKEKVLYK 429 (440)
T ss_pred HHHHHHHh
Confidence 98755443
No 182
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.16 E-value=2.9e-06 Score=93.11 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=58.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccccccCCCCcccccccCcee--ecCCCeEEecccccC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTASVAKEPETGEFCIEAGALM--LADNGICCIDEFDKM 465 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~v~~d~~~g~~~~~~Gal~--lad~GIl~IDE~dk~ 465 (794)
-++|+||||||||.+++++++.+....+.... .+..+|-....++..+. ++.... .....|+||||||..
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~-----~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYR-----EAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHH-----HHHHHhhccCCCeEEEEehhhhc
Confidence 58999999999999999999998766553211 11122222222222110 111111 113469999999954
Q ss_pred Chh---------hH---HHHHHHhhccE-EEEeecceE--EeecCceEEEEecCCC
Q 003809 466 DIR---------DQ---VAIHEAMEQQT-ISITKAGIQ--ATLNARTSILAAANPA 506 (794)
Q Consensus 466 ~~~---------~~---~~L~eame~~~-isi~kaG~~--~~l~ar~siiAaaNP~ 506 (794)
-+. .| ..|+..|++=+ +++ .|.. ..-..++.||||+|..
T Consensus 225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l--~G~w~~~~~~~~V~VIaTTNrp 278 (413)
T PLN00020 225 AGRFGTTQYTVNNQMVNGTLMNIADNPTNVSL--GGDWREKEEIPRVPIIVTGNDF 278 (413)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCccccc--cccccccccCCCceEEEeCCCc
Confidence 332 11 23445554311 111 1221 1234579999999965
No 183
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.6e-06 Score=95.38 Aligned_cols=189 Identities=21% Similarity=0.258 Sum_probs=102.9
Q ss_pred CCceechhhHHHHHHHHHhCCcc-cccCCCcccccce-eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccc
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVH-KLTHEGINLRGDI-NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTAS 432 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~-~~~~~g~~~Rg~i-niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~ 432 (794)
.-+|.|.+.+|+++.-+.+=+.- .....| +|... .+||.||||||||+|++++|..+...++.. +++.|+..
T Consensus 152 ~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~i----SassLtsK 225 (428)
T KOG0740|consen 152 WDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNI----SASSLTSK 225 (428)
T ss_pred ccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeec----cHHHhhhh
Confidence 34688989998887554432111 111111 11111 489999999999999999999887666542 44555554
Q ss_pred cccCCCCcccccccCceeec---CCCeEEecccccC----Chh----hHHHHHHHhhccEEEEeecceEEeecCceEEEE
Q 003809 433 VAKEPETGEFCIEAGALMLA---DNGICCIDEFDKM----DIR----DQVAIHEAMEQQTISITKAGIQATLNARTSILA 501 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~----~~~----~~~~L~eame~~~isi~kaG~~~~l~ar~siiA 501 (794)
.... ++..+.+ .+-.| .-+|+||||+|++ ++. .+-...+++-+.. |....-+.|+.+++
T Consensus 226 ~~Ge---~eK~vra-lf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~------~~~s~~~drvlvig 295 (428)
T KOG0740|consen 226 YVGE---SEKLVRA-LFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD------GKNSAPDDRVLVIG 295 (428)
T ss_pred ccCh---HHHHHHH-HHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhc------cccCCCCCeEEEEe
Confidence 4322 1211111 11111 3479999999943 111 1122223322211 33333445899999
Q ss_pred ecCCCCCCCCCCCCccCcccccCccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHH
Q 003809 502 AANPAGGRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQ 580 (794)
Q Consensus 502 aaNP~~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~ 580 (794)
|+|.++ .++...+|+| .+. .-|.-..+++..+...+..-. ...++--.
T Consensus 296 aTN~P~------------------e~Dea~~Rrf---~kr~yiplPd~etr~~~~~~ll~~~----------~~~l~~~d 344 (428)
T KOG0740|consen 296 ATNRPW------------------ELDEAARRRF---VKRLYIPLPDYETRSLLWKQLLKEQ----------PNGLSDLD 344 (428)
T ss_pred cCCCch------------------HHHHHHHHHh---hceeeecCCCHHHHHHHHHHHHHhC----------CCCccHHH
Confidence 999664 2344445544 343 345556677777766554422 12244455
Q ss_pred HHHHHHHHHH
Q 003809 581 LEALIRLSEA 590 (794)
Q Consensus 581 LesliRlseA 590 (794)
+..|+++.+.
T Consensus 345 ~~~l~~~Teg 354 (428)
T KOG0740|consen 345 ISLLAKVTEG 354 (428)
T ss_pred HHHHHHHhcC
Confidence 5666666555
No 184
>PRK08727 hypothetical protein; Validated
Probab=98.15 E-value=2.3e-05 Score=82.35 Aligned_cols=176 Identities=14% Similarity=0.135 Sum_probs=99.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc----ceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR----SVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~----~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
.++|+|++|||||+|+++++..+.. ..|.+. ..+..... . .+. .+.+..+++||||+.+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-----~~~~~~~~-----~--~~~----~l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-----QAAAGRLR-----D--ALE----ALEGRSLVALDGLESIA 106 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-----HHhhhhHH-----H--HHH----HHhcCCEEEEeCccccc
Confidence 4999999999999999998765432 223211 01110000 0 000 11233589999999875
Q ss_pred --hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCC-CCccCc---c-cccCccccHHHHHHHHHH-
Q 003809 467 --IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKS-KPLKKH---E-DALAPAFTTAQLKRYIAY- 538 (794)
Q Consensus 467 --~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~-~~l~~~---~-~~~~~~~~~~~lr~yi~~- 538 (794)
+..+..++..++... .....+|.|+|-.+..|... ..+..+ . ...-++++.+.+..++..
T Consensus 107 ~~~~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 107 GQREDEVALFDFHNRAR------------AAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CChHHHHHHHHHHHHHH------------HcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 345567777765432 11345677777544433221 111100 0 111234566777777764
Q ss_pred HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 539 AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 539 ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
|+...-.+++++.++|.+.. +-+.|.+.+++....+.|....+ .||...+++++..
T Consensus 175 a~~~~l~l~~e~~~~La~~~----------------~rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~~ 230 (233)
T PRK08727 175 AQRRGLALDEAAIDWLLTHG----------------ERELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLEE 230 (233)
T ss_pred HHHcCCCCCHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHhh
Confidence 54445578898888887631 12457776666655544444444 6999999887753
No 185
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.15 E-value=4e-05 Score=80.78 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=90.4
Q ss_pred CeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC----CCCCCCCCcc----Cccc--cc-
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG----GRYDKSKPLK----KHED--AL- 523 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~----Gryd~~~~l~----~~~~--~~- 523 (794)
|++||||++.++-+--..||.++|+-- ...+|.|+|.-. |.-|-..+.- ..|. .+
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iir 363 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIR 363 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEe
Confidence 899999999999999999999997542 234555666432 2111111111 0011 00
Q ss_pred CccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCH
Q 003809 524 APAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHP 602 (794)
Q Consensus 524 ~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~ 602 (794)
...++.+.+|..|..--+ -.-.++++|..+|.. + ....|.|-...|+--+--.|++++++.|..
T Consensus 364 t~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~----~-----------gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v 428 (456)
T KOG1942|consen 364 TLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAE----I-----------GTSTSLRYAVQLLTPASILAKTNGRKEISV 428 (456)
T ss_pred eccCCHHHHHHHHHHHHhhhcceecHHHHHHHHh----h-----------ccchhHHHHHHhcCHHHHHHHHcCCceeec
Confidence 124678888877754322 455678887777754 1 123567777788887888999999999999
Q ss_pred HHHHHHHHHHhhhccc
Q 003809 603 RHVRVAVRLLKTSVIS 618 (794)
Q Consensus 603 ~dv~eAi~L~~~s~~~ 618 (794)
+||+++-.||-++-.+
T Consensus 429 ~dvee~~~Lf~Dak~s 444 (456)
T KOG1942|consen 429 EDVEEVTELFLDAKRS 444 (456)
T ss_pred ccHHHHHHHHHhchhh
Confidence 9999999999776543
No 186
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.14 E-value=5.6e-05 Score=80.50 Aligned_cols=197 Identities=14% Similarity=0.118 Sum_probs=110.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc-eeecCC---ccCccccccccccC---CCCccc------cccc---CceeecCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS-VYTSGK---SSSAAGLTASVAKE---PETGEF------CIEA---GALMLADN 454 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~-~~~~g~---~ss~~gLt~~v~~d---~~~g~~------~~~~---Gal~lad~ 454 (794)
.++|+|+||+|||++++.++..++.. +..... ..+...+...+... +..+.. .+.. ........
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 58999999999999999999887632 221111 01111111111000 000100 0000 00011234
Q ss_pred CeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC-CCCCCC--CCccCc--ccccCccccH
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG-GRYDKS--KPLKKH--EDALAPAFTT 529 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~-Gryd~~--~~l~~~--~~~~~~~~~~ 529 (794)
.+++|||++.++......|....+-.. .-...+.++.+..|.. .+.... ..+..+ ....-++++.
T Consensus 125 ~vliiDe~~~l~~~~~~~l~~l~~~~~----------~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 125 ALLVVDEAQNLTPELLEELRMLSNFQT----------DNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred eEEEEECcccCCHHHHHHHHHHhCccc----------CCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 589999999999877666654432211 0011345555555542 111110 011100 0111356888
Q ss_pred HHHHHHHHHHhc-c----CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 530 AQLKRYIAYAKT-L----KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 530 ~~lr~yi~~ar~-~----~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
++++.|+...-. . .+.+++++.+.|.+. ..-.+|.+..+...+...|..+..+.|+.++
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~----------------s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~ 258 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRF----------------SRGIPRLINILCDRLLLSAFLEEKREIGGEE 258 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH----------------cCCcccHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 899998875432 1 356899888888652 1123588899999999999899999999999
Q ss_pred HHHHHHHHh
Q 003809 605 VRVAVRLLK 613 (794)
Q Consensus 605 v~eAi~L~~ 613 (794)
|.+|++-+.
T Consensus 259 v~~~~~~~~ 267 (269)
T TIGR03015 259 VREVIAEID 267 (269)
T ss_pred HHHHHHHhh
Confidence 999997654
No 187
>PRK09087 hypothetical protein; Validated
Probab=98.11 E-value=2.6e-05 Score=81.64 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=95.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
.++|+|++|+|||+|++++++... ..|.... .++ .+ .+.....++++||+++.+.. ++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~-~~~i~~~-----~~~---------~~------~~~~~~~~~l~iDDi~~~~~-~~ 103 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD-ALLIHPN-----EIG---------SD------AANAAAEGPVLIEDIDAGGF-DE 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC-CEEecHH-----Hcc---------hH------HHHhhhcCeEEEECCCCCCC-CH
Confidence 489999999999999999887532 2222111 011 10 01111236899999998753 45
Q ss_pred HHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCC-CCCccCc-----ccccCccccHHHHHHHHHHHh-ccC
Q 003809 471 VAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDK-SKPLKKH-----EDALAPAFTTAQLKRYIAYAK-TLK 543 (794)
Q Consensus 471 ~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~-~~~l~~~-----~~~~~~~~~~~~lr~yi~~ar-~~~ 543 (794)
..|++.+..-. ....+++.|++-.+..|.. ...+..+ --.+ ...+.+.++.++...- ...
T Consensus 104 ~~lf~l~n~~~------------~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l-~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 104 TGLFHLINSVR------------QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEI-GEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred HHHHHHHHHHH------------hCCCeEEEECCCChHHhccccccHHHHHhCCceeec-CCCCHHHHHHHHHHHHHHcC
Confidence 66666653111 1123344444433222222 1112100 0011 2345666666665443 345
Q ss_pred CcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 544 PKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 544 P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
-.+++++.++|..... -++|.++.++..-.+.|....+ .+|...+++++..+
T Consensus 171 ~~l~~ev~~~La~~~~----------------r~~~~l~~~l~~L~~~~~~~~~-~it~~~~~~~l~~~ 222 (226)
T PRK09087 171 LYVDPHVVYYLVSRME----------------RSLFAAQTIVDRLDRLALERKS-RITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHHHHHHHHHhh----------------hhHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhh
Confidence 6799999999976432 3467777766555555555554 58999999988754
No 188
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.0001 Score=87.87 Aligned_cols=171 Identities=10% Similarity=0.086 Sum_probs=97.1
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCccee-----ecCCc-----
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVY-----TSGKS----- 423 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~-----~~g~~----- 423 (794)
+-+|+||+.+++.|.-++-.|.-. | +||+||+|+|||++++.+++.+.-... .+|.-
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~------------hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLA------------HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCC------------eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 336889999999998888776532 5 789999999999999999997531100 01100
Q ss_pred -c--CccccccccccCCC--Ccccccc-----cC-ceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEe
Q 003809 424 -S--SAAGLTASVAKEPE--TGEFCIE-----AG-ALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQAT 492 (794)
Q Consensus 424 -s--s~~gLt~~v~~d~~--~g~~~~~-----~G-al~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~ 492 (794)
. ....+. .-+.. .+.-.+. .- .-+.++.-|++|||++.|+...+++|+..||+=
T Consensus 84 ~~~~~~~n~~---~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep------------ 148 (614)
T PRK14971 84 FNEQRSYNIH---ELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP------------ 148 (614)
T ss_pred HhcCCCCceE---EecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC------------
Confidence 0 000000 00000 0000000 00 012345669999999999999999999999852
Q ss_pred ecCceEEEEecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHH
Q 003809 493 LNARTSILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVD 556 (794)
Q Consensus 493 l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~ 556 (794)
|..+.+|.+++-.. +. ...+..+-..+ -..++.+.+..++..+- ...-.+++++.+.|..
T Consensus 149 -p~~tifIL~tt~~~-kI--l~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~ 210 (614)
T PRK14971 149 -PSYAIFILATTEKH-KI--LPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQ 210 (614)
T ss_pred -CCCeEEEEEeCCch-hc--hHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 22333333333111 00 11111111111 23467888888887653 3455678888887765
No 189
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=98.05 E-value=7.7e-05 Score=87.24 Aligned_cols=245 Identities=20% Similarity=0.264 Sum_probs=150.8
Q ss_pred ccCCCHHHHHHHHHHHcCCchHHHhhhhc--CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHH
Q 003809 326 QHQFTTEEIDEIQRMRNAPDFFNKIVDSI--GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKS 403 (794)
Q Consensus 326 ~~~~t~~e~~~i~~~~~~~~i~~~l~~si--~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS 403 (794)
...||.+||- +.|+.|+ -|+-+. +..|..+|.-|+--+.. +.|++=.||.|||||
T Consensus 174 R~~FT~dEWi------------d~LlrSiG~eP~~~~-~r~K~~~L~RliPlVE~----------N~Nl~ELgPrgTGKS 230 (675)
T TIGR02653 174 RRHFTSDEWI------------DVLLRSVGMEPTNLE-RRTKWHLLTRLIPLVEN----------NYNLCELGPRGTGKS 230 (675)
T ss_pred HHhCCHHHHH------------HHHHHhcCCCccccC-HHHHHHHHHhhhhhccc----------ccceEEECCCCCCcc
Confidence 3567877764 3355544 344332 26777777777766643 349999999999999
Q ss_pred HHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccC---ChhhHHHHHHHhhcc
Q 003809 404 QFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKM---DIRDQVAIHEAMEQQ 480 (794)
Q Consensus 404 ~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~---~~~~~~~L~eame~~ 480 (794)
.+-+ +++|.+...+|-..+.+.|+.-. .++ +.|.+-.-| ++++||+..+ +++....|-..|++|
T Consensus 231 ~~y~---eiSp~~~liSGG~~T~A~LFyn~----~~~----~~GlVg~~D--~VaFDEva~i~f~d~d~v~imK~YM~sG 297 (675)
T TIGR02653 231 HVYK---ECSPNSILMSGGQTTVANLFYNM----STR----QIGLVGMWD--VVAFDEVAGIEFKDKDGVQIMKDYMASG 297 (675)
T ss_pred eeee---ccCCceEEEECCccchhHeeEEc----CCC----ceeEEeecc--EEEEeeccccccCCHHHHHHHHHHhhcC
Confidence 9976 67788888888777777665422 222 455555443 7899999854 334455677779999
Q ss_pred EEEEeecceEEeecCceEEEEecC-CCCCCCCCCCCccCcccccCccc--cHHHHHHHHHHHhc-cCCcCCHH-------
Q 003809 481 TISITKAGIQATLNARTSILAAAN-PAGGRYDKSKPLKKHEDALAPAF--TTAQLKRYIAYAKT-LKPKLSLE------- 549 (794)
Q Consensus 481 ~isi~kaG~~~~l~ar~siiAaaN-P~~Gryd~~~~l~~~~~~~~~~~--~~~~lr~yi~~ar~-~~P~ls~e------- 549 (794)
.++..+ ....-.|.+.+++-.| |.. ...++..+. ..+.+.+ +.++|-|+-.|..- --|+++++
T Consensus 298 ~FsRG~--~~~~a~as~vfvGNi~~~v~-~~~k~~~lf---~~lP~~~~~DsAflDRiH~yiPGWeiPk~~~e~~t~~yG 371 (675)
T TIGR02653 298 SFARGK--ESIEGKASIVFVGNINQSVE-TLVKTSHLF---APFPEAMRIDTAFFDRFHYYIPGWEIPKMRPEYFTNRYG 371 (675)
T ss_pred cccccc--cccccceeEEEEcccCCchH-HHhhccccc---ccCChhhcccchHHHHhhccCcCCcCccCCHHHcccCCc
Confidence 988653 2222233344444444 211 000011111 0111122 44556666555542 23666655
Q ss_pred -HHHHHHHHHHHhccCCCCCC----CccccccCHHHHHHHHHHHHHHHHh-cCCCCcCHHHHHHHHHHH
Q 003809 550 -ARKLLVDSYVALRRGDTTPG----SRVAYRMTVRQLEALIRLSEAIARS-HLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 550 -a~~~L~~~Y~~lR~~~~~~~----~~~~~~iT~R~LesliRlseA~Arl-~~~~~V~~~dv~eAi~L~ 612 (794)
..+++.+++.+||+.+.... -+-.-.++.|+-.++-|+.-++.|| .-...++.+++++++++-
T Consensus 372 l~~DylsE~l~~lR~~~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~~A 440 (675)
T TIGR02653 372 FIVDYLAEYMREMRKRSFADAIDRFFKLGNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTYA 440 (675)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHhhEecCCCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 35678888888887543110 1123467999999999999999998 556789999999866553
No 190
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.01 E-value=1.1e-05 Score=77.68 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=58.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
+|||+|+|||||+.+|++++....+.....-.. ....+ . ...+-.+.+|++||+|++.++++.|
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~-~~~~~---------~------~~~l~~a~~gtL~l~~i~~L~~~~Q 86 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVI-DCASL---------P------AELLEQAKGGTLYLKNIDRLSPEAQ 86 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC-CHHCT---------C------HHHHHHCTTSEEEEECGCCS-HHHH
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe-chhhC---------c------HHHHHHcCCCEEEECChHHCCHHHH
Confidence 899999999999999999999866521100000 00000 0 1122235899999999999999999
Q ss_pred HHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 471 VAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 471 ~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
..|..+++... +.++.+|+++...
T Consensus 87 ~~L~~~l~~~~------------~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 87 RRLLDLLKRQE------------RSNVRLIASSSQD 110 (138)
T ss_dssp HHHHHHHHHCT------------TTTSEEEEEECC-
T ss_pred HHHHHHHHhcC------------CCCeEEEEEeCCC
Confidence 99999997621 2356777777644
No 191
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.01 E-value=2.6e-05 Score=88.66 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=96.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc------ceeecCCccCccccccccc---cCCCCcccccccCceeecCCCeEEecc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR------SVYTSGKSSSAAGLTASVA---KEPETGEFCIEAGALMLADNGICCIDE 461 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~------~~~~~g~~ss~~gLt~~v~---~d~~~g~~~~~~Gal~lad~GIl~IDE 461 (794)
+++|+|+||+|||+|++++++.+.. .+|.+. ..+..... ++.....+. .. +....+++|||
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-----~~~~~~~~~~~~~~~~~~~~---~~--~~~~dlLiiDD 207 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-----EKFTNDFVNALRNNKMEEFK---EK--YRSVDLLLIDD 207 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-----HHHHHHHHHHHHcCCHHHHH---HH--HHhCCEEEEeh
Confidence 5899999999999999999986421 223211 11111000 110000110 00 11246999999
Q ss_pred cccCChh--hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC----------CCCCCCCCccCcccccCccccH
Q 003809 462 FDKMDIR--DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG----------GRYDKSKPLKKHEDALAPAFTT 529 (794)
Q Consensus 462 ~dk~~~~--~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~----------Gryd~~~~l~~~~~~~~~~~~~ 529 (794)
++.+... .+..++..++.-. ..| ...|+++.+++. +|+.....+ .+ ++.+.
T Consensus 208 i~~l~~~~~~~~~l~~~~n~~~----~~~-------~~iiits~~~p~~l~~l~~~l~SRl~~g~~v-----~i-~~pd~ 270 (405)
T TIGR00362 208 IQFLAGKERTQEEFFHTFNALH----ENG-------KQIVLTSDRPPKELPGLEERLRSRFEWGLVV-----DI-EPPDL 270 (405)
T ss_pred hhhhcCCHHHHHHHHHHHHHHH----HCC-------CCEEEecCCCHHHHhhhhhhhhhhccCCeEE-----Ee-CCCCH
Confidence 9987543 4455665553211 001 112333332221 122111001 11 22344
Q ss_pred HHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHH
Q 003809 530 AQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVA 608 (794)
Q Consensus 530 ~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eA 608 (794)
+.....+.. +......+++++.++|.+. +.-++|.|+.++.-..+.|.+..+ .++.+.++++
T Consensus 271 ~~r~~il~~~~~~~~~~l~~e~l~~ia~~----------------~~~~~r~l~~~l~~l~~~a~~~~~-~it~~~~~~~ 333 (405)
T TIGR00362 271 ETRLAILQKKAEEEGLELPDEVLEFIAKN----------------IRSNVRELEGALNRLLAYASLTGK-PITLELAKEA 333 (405)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHh----------------cCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 444444433 2345677899988888652 234679999999888888887664 4999988888
Q ss_pred HHHH
Q 003809 609 VRLL 612 (794)
Q Consensus 609 i~L~ 612 (794)
+.-+
T Consensus 334 L~~~ 337 (405)
T TIGR00362 334 LKDL 337 (405)
T ss_pred HHHh
Confidence 7653
No 192
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=7.4e-05 Score=89.01 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=94.5
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee------ecCCccC---
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY------TSGKSSS--- 425 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~------~~g~~ss--- 425 (794)
+.++.||+.+++.|.-++..+.-. -++||+||||+|||++++.+++.+..... .+|.-..
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~-----------~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIA-----------PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCC-----------ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 346889999999888777765310 17899999999999999999998643211 1111000
Q ss_pred -cccccccc-ccCCC--Ccc----cccc-c-CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecC
Q 003809 426 -AAGLTASV-AKEPE--TGE----FCIE-A-GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 426 -~~gLt~~v-~~d~~--~g~----~~~~-~-Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
..|...-+ .-+.. .+. -.++ . -.-+.+...|++|||+++|+...+++|+..||+- +.
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~ 150 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PP 150 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-------------Cc
Confidence 00000000 00000 010 0000 0 0001245569999999999999999999999842 22
Q ss_pred ceEEE-EecCCCCCCCCCCCCccCccccc-CccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHH
Q 003809 496 RTSIL-AAANPAGGRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDS 557 (794)
Q Consensus 496 r~sii-AaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~ 557 (794)
.+.+| +|.||.. .- .++..+-..+ -..++.+.+..++... +.....+++++...|...
T Consensus 151 ~tvfIL~t~~~~~--ll--pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~ 211 (620)
T PRK14948 151 RVVFVLATTDPQR--VL--PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQR 211 (620)
T ss_pred CeEEEEEeCChhh--hh--HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34333 3433321 10 0111011111 1235666777766543 334556788877776653
No 193
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=4e-05 Score=87.99 Aligned_cols=178 Identities=13% Similarity=0.233 Sum_probs=97.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC----cceeecCCccCccccccccccCCCCccc-ccccCceeecCCCeEEecccccC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP----RSVYTSGKSSSAAGLTASVAKEPETGEF-CIEAGALMLADNGICCIDEFDKM 465 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p----~~~~~~g~~ss~~gLt~~v~~d~~~g~~-~~~~Gal~lad~GIl~IDE~dk~ 465 (794)
+++|+|+||+|||+|+++++..+. +.+|.+. ..++.........+.. .+. -......+++|||++.+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-----~~f~~~~~~~l~~~~~~~f~---~~~~~~dvLiIDDiq~l 214 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-----ELFTEHLVSAIRSGEMQRFR---QFYRNVDALFIEDIEVF 214 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-----HHHHHHHHHHHhcchHHHHH---HHcccCCEEEEcchhhh
Confidence 589999999999999999998653 2233321 1111110000000100 000 00124569999999988
Q ss_pred Ch--hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC-----------CCCCCCCCccCcccccCccccHHHH
Q 003809 466 DI--RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG-----------GRYDKSKPLKKHEDALAPAFTTAQL 532 (794)
Q Consensus 466 ~~--~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~-----------Gryd~~~~l~~~~~~~~~~~~~~~l 532 (794)
.. ..+..++..+....- .| . .+|.|+|-.+ .||.....+ .+. +.+.+.+
T Consensus 215 ~~k~~~qeelf~l~N~l~~----~~-------k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~-----~l~-~pd~e~r 276 (445)
T PRK12422 215 SGKGATQEEFFHTFNSLHT----EG-------K-LIVISSTCAPQDLKAMEERLISRFEWGIAI-----PLH-PLTKEGL 276 (445)
T ss_pred cCChhhHHHHHHHHHHHHH----CC-------C-cEEEecCCCHHHHhhhHHHHHhhhcCCeEE-----ecC-CCCHHHH
Confidence 54 345566666532210 01 1 2333443221 122111111 122 2356666
Q ss_pred HHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHH---HHHHHhcCCCCcCHHHHHHH
Q 003809 533 KRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLS---EAIARSHLETQVHPRHVRVA 608 (794)
Q Consensus 533 r~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRls---eA~Arl~~~~~V~~~dv~eA 608 (794)
..++... ......+++++.++|...+ .-++|.|+..+... .|.+.+..+ .++.++++++
T Consensus 277 ~~iL~~k~~~~~~~l~~evl~~la~~~----------------~~dir~L~g~l~~l~~~~a~~~~~~~-~i~~~~~~~~ 339 (445)
T PRK12422 277 RSFLERKAEALSIRIEETALDFLIEAL----------------SSNVKSLLHALTLLAKRVAYKKLSHQ-LLYVDDIKAL 339 (445)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhc----------------CCCHHHHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHH
Confidence 6666543 3456789999999886522 23568888777644 477777765 4899988888
Q ss_pred HHH
Q 003809 609 VRL 611 (794)
Q Consensus 609 i~L 611 (794)
++=
T Consensus 340 l~~ 342 (445)
T PRK12422 340 LHD 342 (445)
T ss_pred HHH
Confidence 763
No 194
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=2e-05 Score=88.94 Aligned_cols=135 Identities=14% Similarity=0.169 Sum_probs=76.7
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcce---eecCC--------
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSV---YTSGK-------- 422 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~---~~~g~-------- 422 (794)
.+.+|+||+.+++.|.-++..+.......+.++ .-.+||.||||+|||++++.+++.+.-.. ..+|.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l--~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGM--THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCC--CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 455799999999998888776542111111111 11489999999999999999987642110 00000
Q ss_pred ccCccccc--------ccc--ccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEe
Q 003809 423 SSSAAGLT--------ASV--AKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQAT 492 (794)
Q Consensus 423 ~ss~~gLt--------~~v--~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~ 492 (794)
..+..++. ..+ +++-. ......| ..+...|++|||+++|++..+++|+..||+-.
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~-~~~~~~p---~~~~~kViiIDead~m~~~aanaLLk~LEep~----------- 145 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELV-TIAARRP---STGRWRIVVIEDADRLTERAANALLKAVEEPP----------- 145 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHH-HHHHhCc---ccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-----------
Confidence 00000100 000 00000 0000011 12345699999999999999999999998621
Q ss_pred ecCceEEEEecCCC
Q 003809 493 LNARTSILAAANPA 506 (794)
Q Consensus 493 l~ar~siiAaaNP~ 506 (794)
+..+.|++|+||.
T Consensus 146 -~~~~fIL~a~~~~ 158 (394)
T PRK07940 146 -PRTVWLLCAPSPE 158 (394)
T ss_pred -CCCeEEEEECChH
Confidence 1235677777753
No 195
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.99 E-value=2.6e-05 Score=89.92 Aligned_cols=181 Identities=15% Similarity=0.192 Sum_probs=98.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc------ceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR------SVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~------~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk 464 (794)
+++|+|+||+|||+|++++++.+.. ..|.+..... ..+...+ +......+. + .+..-.+++|||++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~-~~~~~~~-~~~~~~~~~-~----~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT-NDFVNAL-RNNTMEEFK-E----KYRSVDVLLIDDIQF 222 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHH-HcCcHHHHH-H----HHhcCCEEEEehhhh
Confidence 5899999999999999999987532 1222111000 0011111 100000110 0 111335999999998
Q ss_pred CChh--hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC----------CCCCCCCCccCcccccCccccHHHH
Q 003809 465 MDIR--DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG----------GRYDKSKPLKKHEDALAPAFTTAQL 532 (794)
Q Consensus 465 ~~~~--~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~----------Gryd~~~~l~~~~~~~~~~~~~~~l 532 (794)
+... .+..++..++.-. ..| ...++++..|+. .|+.....+ .+ .+.+.+.+
T Consensus 223 l~~~~~~~~~l~~~~n~l~----~~~-------~~iiits~~~p~~l~~l~~~l~SRl~~gl~v-----~i-~~pd~~~r 285 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALH----EAG-------KQIVLTSDRPPKELPGLEERLRSRFEWGLTV-----DI-EPPDLETR 285 (450)
T ss_pred hcCCHHHHHHHHHHHHHHH----HCC-------CcEEEECCCCHHHHHHHHHHHHhHhcCCeeE-----Ee-cCCCHHHH
Confidence 7543 3455555543211 001 123344433321 122111111 11 22345555
Q ss_pred HHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 533 KRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 533 r~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
...+.... .....+++++.++|.+ ...-++|.|+.++....+.|.+..+. ++.+.+++++.-
T Consensus 286 ~~il~~~~~~~~~~l~~e~l~~ia~----------------~~~~~~R~l~~~l~~l~~~~~~~~~~-it~~~~~~~l~~ 348 (450)
T PRK00149 286 IAILKKKAEEEGIDLPDEVLEFIAK----------------NITSNVRELEGALNRLIAYASLTGKP-ITLELAKEALKD 348 (450)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHc----------------CcCCCHHHHHHHHHHHHHHHHhhCCC-CCHHHHHHHHHH
Confidence 55544332 3456789998888865 23456899999999888888887654 899999998875
Q ss_pred H
Q 003809 612 L 612 (794)
Q Consensus 612 ~ 612 (794)
+
T Consensus 349 ~ 349 (450)
T PRK00149 349 L 349 (450)
T ss_pred h
Confidence 4
No 196
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.96 E-value=1.5e-05 Score=81.75 Aligned_cols=112 Identities=22% Similarity=0.320 Sum_probs=72.6
Q ss_pred HHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC----c
Q 003809 348 NKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK----S 423 (794)
Q Consensus 348 ~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~----~ 423 (794)
++..-+...+|+|+++.-.-+-+..-.|.-. |++|.||||||||+-+..++..+-...|..+- .
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 3444455667999999887776666666533 99999999999999999988875433332111 1
Q ss_pred cCccccccccccCC----CCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhh
Q 003809 424 SSAAGLTASVAKEP----ETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAME 478 (794)
Q Consensus 424 ss~~gLt~~v~~d~----~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame 478 (794)
|..-|+. ++|+. ......+.+| ..-|+++||.|.|....|.+|...||
T Consensus 87 SdeRGID--vVRn~IK~FAQ~kv~lp~g-----rhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 87 SDERGID--VVRNKIKMFAQKKVTLPPG-----RHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred ccccccH--HHHHHHHHHHHhhccCCCC-----ceeEEEeeccchhhhHHHHHHHHHHH
Confidence 1111221 12211 0111222232 23499999999999999999999997
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.94 E-value=6.5e-06 Score=76.61 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=58.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---ee-ecCCccCcccccc----ccccCC--CCcccccccCceeecC---CCeE
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VY-TSGKSSSAAGLTA----SVAKEP--ETGEFCIEAGALMLAD---NGIC 457 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~-~~g~~ss~~gLt~----~v~~d~--~~g~~~~~~Gal~lad---~GIl 457 (794)
+++|+||||||||++++.++..+... ++ ............. ....+. ..+....+ ..+..+. ..++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi 82 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKLKPDVL 82 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhcCCCEE
Confidence 89999999999999999999987764 22 2211111100000 000000 01111111 2223333 2899
Q ss_pred EecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCC
Q 003809 458 CIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANP 505 (794)
Q Consensus 458 ~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP 505 (794)
+|||++.+.............. ..............+++++|+
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCC
Confidence 9999999988776554433111 000011122346889999995
No 198
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.94 E-value=4.2e-05 Score=88.15 Aligned_cols=212 Identities=17% Similarity=0.140 Sum_probs=131.8
Q ss_pred hHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee----cC
Q 003809 346 FFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT----SG 421 (794)
Q Consensus 346 i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g 421 (794)
+|.+..-..++++.||+.+.+.|--++..+.- .. --||.|+.|||||+++|.+++-+.-.... +|
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri---~h--------AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENGRI---AH--------AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhCcc---hh--------hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 45556667778899999999999998887752 22 25999999999999999999985432211 11
Q ss_pred C-----------ccCccccccccccCCCCcc----cccc--cCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEE
Q 003809 422 K-----------SSSAAGLTASVAKEPETGE----FCIE--AGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISI 484 (794)
Q Consensus 422 ~-----------~ss~~gLt~~v~~d~~~g~----~~~~--~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi 484 (794)
. ......+.++- .+|- ..++ --+-+.+..-|.+|||.+.++...-++||..+|.=
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaAS----n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP---- 146 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAAS----NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP---- 146 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhh----ccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC----
Confidence 1 11111111110 1110 0000 00112334459999999999999999999987642
Q ss_pred eecceEEeecCc-eEEEEecCCCC------CCCCCCCCccCcccccCccccHHHHHHHHHHHhc-cCCcCCHHHHHHHHH
Q 003809 485 TKAGIQATLNAR-TSILAAANPAG------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKT-LKPKLSLEARKLLVD 556 (794)
Q Consensus 485 ~kaG~~~~l~ar-~siiAaaNP~~------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~-~~P~ls~ea~~~L~~ 556 (794)
|.. ..|+||++|.. .|.. ...-..++.+.++.++.+.-. -.-.+.++|...|..
T Consensus 147 ---------P~hV~FIlATTe~~Kip~TIlSRcq---------~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~ 208 (515)
T COG2812 147 ---------PSHVKFILATTEPQKIPNTILSRCQ---------RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIAR 208 (515)
T ss_pred ---------ccCeEEEEecCCcCcCchhhhhccc---------cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Confidence 223 45678888753 1110 001124678888988877653 456778887777754
Q ss_pred HHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhh
Q 003809 557 SYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKT 614 (794)
Q Consensus 557 ~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~ 614 (794)
. ..-+.|+..|++.-+-+... ..|+.+.|...+.++..
T Consensus 209 ~----------------a~Gs~RDalslLDq~i~~~~----~~It~~~v~~~lG~~~~ 246 (515)
T COG2812 209 A----------------AEGSLRDALSLLDQAIAFGE----GEITLESVRDMLGLTDI 246 (515)
T ss_pred H----------------cCCChhhHHHHHHHHHHccC----CcccHHHHHHHhCCCCH
Confidence 2 12356888888765444432 67888888877766543
No 199
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=3.3e-05 Score=88.89 Aligned_cols=182 Identities=14% Similarity=0.188 Sum_probs=99.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC------cceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP------RSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p------~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk 464 (794)
+++|+|++|+|||+|+++++..+. +.+|.+. ..+...+......+...++.-.-...+-.+++|||++.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-----~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~ 217 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-----DEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQF 217 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-----HHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccc
Confidence 589999999999999999988532 1223221 11111110000000000000000012345999999998
Q ss_pred CC--hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC-----------CCCCCCCccCcccccCccccHHH
Q 003809 465 MD--IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG-----------RYDKSKPLKKHEDALAPAFTTAQ 531 (794)
Q Consensus 465 ~~--~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G-----------ryd~~~~l~~~~~~~~~~~~~~~ 531 (794)
+. ...+..|+..+....- ..-.+|.|+|-.+. ||.....+ .+ .+.+.+.
T Consensus 218 l~~k~~~~e~lf~l~N~~~~------------~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~-----~L-~~pd~e~ 279 (450)
T PRK14087 218 LSYKEKTNEIFFTIFNNFIE------------NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSI-----AI-QKLDNKT 279 (450)
T ss_pred ccCCHHHHHHHHHHHHHHHH------------cCCcEEEECCCCHHHHhhccHHHHHHHhCCcee-----cc-CCcCHHH
Confidence 76 4566777777643321 11134455443321 11111111 11 2345666
Q ss_pred HHHHHHHHhc---cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCC-CCcCHHHHHH
Q 003809 532 LKRYIAYAKT---LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLE-TQVHPRHVRV 607 (794)
Q Consensus 532 lr~yi~~ar~---~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~-~~V~~~dv~e 607 (794)
...++...-. +...+++++.++|... ..-++|.|+.++.-..+.|.+... ..|+.+.|++
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~----------------~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~ 343 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNY----------------YSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSD 343 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHc----------------cCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHH
Confidence 6666654432 2237999999888752 234689999998766577776643 5799999998
Q ss_pred HHHH
Q 003809 608 AVRL 611 (794)
Q Consensus 608 Ai~L 611 (794)
|++=
T Consensus 344 ~l~~ 347 (450)
T PRK14087 344 LFRD 347 (450)
T ss_pred HHhh
Confidence 8864
No 200
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=7.6e-06 Score=85.02 Aligned_cols=180 Identities=19% Similarity=0.200 Sum_probs=95.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee-cCCc--cCccccccccccCCCCcccccccCceeec-CCCeEEecccccC-
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKS--SSAAGLTASVAKEPETGEFCIEAGALMLA-DNGICCIDEFDKM- 465 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~--ss~~gLt~~v~~d~~~g~~~~~~Gal~la-d~GIl~IDE~dk~- 465 (794)
.||++||||||||.+++++++.....+.. .|.. ....|--+..++.. -.+... .-.|+|+||+|.+
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrel---------f~martkkaciiffdeidaig 283 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVREL---------FEMARTKKACIIFFDEIDAIG 283 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHH---------HHHhcccceEEEEeecccccc
Confidence 58999999999999999999976654432 1110 00111111111110 001111 2369999999843
Q ss_pred ----------ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccCcc
Q 003809 466 ----------DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALAPA 526 (794)
Q Consensus 466 ----------~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~ 526 (794)
+.+.|..+++.+.|-. |... ..++-++.|+|.+ +||.|+...+.
T Consensus 284 garfddg~ggdnevqrtmleli~qld------gfdp--rgnikvlmatnrpdtldpallrpgrldrkvef~--------- 346 (435)
T KOG0729|consen 284 GARFDDGAGGDNEVQRTMLELINQLD------GFDP--RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG--------- 346 (435)
T ss_pred CccccCCCCCcHHHHHHHHHHHHhcc------CCCC--CCCeEEEeecCCCCCcCHhhcCCcccccceecc---------
Confidence 3456788888886543 3221 1246778888865 47777766554
Q ss_pred ccHHHHHHHH--HHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 527 FTTAQLKRYI--AYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 527 ~~~~~lr~yi--~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
++.-.=|..| .++|+. ....+.+-.|.. .| +. .-|...+.|+.--|--.|--.-+..+|+.|
T Consensus 347 lpdlegrt~i~kihaksm--sverdir~ella---rl---cp--------nstgaeirsvcteagmfairarrk~atekd 410 (435)
T KOG0729|consen 347 LPDLEGRTHIFKIHAKSM--SVERDIRFELLA---RL---CP--------NSTGAEIRSVCTEAGMFAIRARRKVATEKD 410 (435)
T ss_pred CCcccccceeEEEecccc--ccccchhHHHHH---hh---CC--------CCcchHHHHHHHHhhHHHHHHHhhhhhHHH
Confidence 1100000000 011110 011111111111 11 11 124466777777776677666778999999
Q ss_pred HHHHHHHH
Q 003809 605 VRVAVRLL 612 (794)
Q Consensus 605 v~eAi~L~ 612 (794)
..+|+.-.
T Consensus 411 fl~av~kv 418 (435)
T KOG0729|consen 411 FLDAVNKV 418 (435)
T ss_pred HHHHHHHH
Confidence 99998654
No 201
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.90 E-value=2.3e-05 Score=96.81 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=37.2
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-...++|++..-+.++-.|...... |++|+||||||||++++.++..+..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~------------n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKN------------NPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcC------------ceEEECCCCCCHHHHHHHHHHHhhc
Confidence 3345899987766555555444322 8999999999999999999998643
No 202
>PRK05642 DNA replication initiation factor; Validated
Probab=97.83 E-value=0.00018 Score=75.66 Aligned_cols=174 Identities=14% Similarity=0.172 Sum_probs=93.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC----cceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP----RSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p----~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
+++|+|++|+|||+|+++++..+. +.+|.+.. .+... ...+ ++ .+.+.-+++||+++...
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~-----~~~~~------~~~~-~~----~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA-----ELLDR------GPEL-LD----NLEQYELVCLDDLDVIA 110 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH-----HHHhh------hHHH-HH----hhhhCCEEEEechhhhc
Confidence 689999999999999999986432 22332211 11100 0000 00 01123489999999764
Q ss_pred --hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCC-CCCccCcc-----cccCccccHHHHHHHHH-
Q 003809 467 --IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDK-SKPLKKHE-----DALAPAFTTAQLKRYIA- 537 (794)
Q Consensus 467 --~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~-~~~l~~~~-----~~~~~~~~~~~lr~yi~- 537 (794)
+..+..|+..++.-. ..+..+|.|+|-.+..+.. ...+..+- -.+ ...+.+.+...+.
T Consensus 111 ~~~~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l-~~~~~e~~~~il~~ 177 (234)
T PRK05642 111 GKADWEEALFHLFNRLR------------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQM-RGLSDEDKLRALQL 177 (234)
T ss_pred CChHHHHHHHHHHHHHH------------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeec-CCCCHHHHHHHHHH
Confidence 344566777764311 0112233333322222221 11122010 011 2345555555555
Q ss_pred HHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 538 YAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 538 ~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
.+....-.+++++.++|... .+-++|.|+.++..-.. +.+.-...||..-+++++.
T Consensus 178 ka~~~~~~l~~ev~~~L~~~----------------~~~d~r~l~~~l~~l~~-~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 178 RASRRGLHLTDEVGHFILTR----------------GTRSMSALFDLLERLDQ-ASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHcCCCCCHHHHHHHHHh----------------cCCCHHHHHHHHHHHHH-HHHHcCCcCCHHHHHHHhc
Confidence 45444557899988888752 23457888888875543 5554445689888887763
No 203
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=8.1e-05 Score=86.29 Aligned_cols=194 Identities=21% Similarity=0.180 Sum_probs=110.5
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceeec-CC--ccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYTS-GK--SSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~-g~--~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
-++|++||||||||.+++++++....-++.. +. .+...|-+.+..|... .-+...+-..+|||||+|.+-
T Consensus 219 rg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f-------~~a~k~~~psii~IdEld~l~ 291 (693)
T KOG0730|consen 219 RGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAF-------AEALKFQVPSIIFIDELDALC 291 (693)
T ss_pred CCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHH-------HHHhccCCCeeEeHHhHhhhC
Confidence 3689999999999999999999876433321 11 1122222222111100 011111125799999999776
Q ss_pred h----------hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC--------CCCCCCCCccCcccccCcccc
Q 003809 467 I----------RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG--------GRYDKSKPLKKHEDALAPAFT 528 (794)
Q Consensus 467 ~----------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~--------Gryd~~~~l~~~~~~~~~~~~ 528 (794)
+ ....+|+..|+.-. -.....+|||+|.+. ||||...-+. .+
T Consensus 292 p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~sld~alRRgRfd~ev~Ig---------iP 351 (693)
T KOG0730|consen 292 PKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPDSLDPALRRGRFDREVEIG---------IP 351 (693)
T ss_pred CcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCccccChhhhcCCCcceeeec---------CC
Confidence 5 23345677664322 123578888888653 4665544433 23
Q ss_pred HHHHHHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Q 003809 529 TAQLKRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRV 607 (794)
Q Consensus 529 ~~~lr~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~e 607 (794)
...-|.-|...-. ..+..++.....+ +....+++.+.|.++.+-|.-.|-.+ +.+|+..
T Consensus 352 ~~~~RldIl~~l~k~~~~~~~~~l~~i---------------A~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~ 411 (693)
T KOG0730|consen 352 GSDGRLDILRVLTKKMNLLSDVDLEDI---------------AVSTHGYVGADLAALCREASLQATRR-----TLEIFQE 411 (693)
T ss_pred CchhHHHHHHHHHHhcCCcchhhHHHH---------------HHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHH
Confidence 2222322221111 1222233222222 12345678899999999887766655 8889999
Q ss_pred HHHHHhhhc---ccccCCcccccccc
Q 003809 608 AVRLLKTSV---ISVESSEIDLSEFQ 630 (794)
Q Consensus 608 Ai~L~~~s~---~~~~~~~i~~~~~~ 630 (794)
|..-.+-|- +.++.++|.|++..
T Consensus 412 A~~~i~psa~Re~~ve~p~v~W~dIG 437 (693)
T KOG0730|consen 412 ALMGIRPSALREILVEMPNVSWDDIG 437 (693)
T ss_pred HHhcCCchhhhheeccCCCCChhhcc
Confidence 887655544 23788999998654
No 204
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00015 Score=80.80 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=40.4
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+.++||+.++..+.-++-.|.-. =.+||+||+|+||+++++.+++.+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~-----------ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLH-----------HALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC-----------eeEeeECCCCCCHHHHHHHHHHHHc
Confidence 46899999999999999887522 0389999999999999999998753
No 205
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=3.3e-05 Score=82.22 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=61.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee---cCCccCccccccccccCCCCcccccccCceeecCCCeEEeccccc---
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT---SGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDK--- 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~---~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk--- 464 (794)
.++|+||||||||.+++++++.+...... +...+..+|-.+.++|+-+.-..... ..|+|+||+|.
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~--------pciifmdeiDAigG 239 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVI--------PCIIFMDEIDAIGG 239 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhC--------ceEEeehhhhhhcc
Confidence 58999999999999999999987654332 22223344555555554321111111 27999999983
Q ss_pred -----C---ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 465 -----M---DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 465 -----~---~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
+ +...|..|.+.+.|-. | .....++-+|.|+|..
T Consensus 240 Rr~se~Ts~dreiqrTLMeLlnqmd------g--fd~l~rVk~ImatNrp 281 (388)
T KOG0651|consen 240 RRFSEGTSSDREIQRTLMELLNQMD------G--FDTLHRVKTIMATNRP 281 (388)
T ss_pred EEeccccchhHHHHHHHHHHHHhhc------c--chhcccccEEEecCCc
Confidence 2 2334555666655322 1 1234578889999954
No 206
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00012 Score=85.91 Aligned_cols=184 Identities=15% Similarity=0.188 Sum_probs=98.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc------ceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR------SVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~------~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk 464 (794)
.++|+|++|+|||+|++++++.+.. ..|.+..... ..+..++ ++.....|.- ...+-.+|+||||+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el~~al-~~~~~~~f~~-----~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEFINSI-RDGKGDSFRR-----RYREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHHH-HhccHHHHHH-----HhhcCCEEEEehhcc
Confidence 4899999999999999999987532 2333211000 0111111 1100001100 012346899999998
Q ss_pred CChh--hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCC-Ccc-Ccc----cccCccccHHHHHHHH
Q 003809 465 MDIR--DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSK-PLK-KHE----DALAPAFTTAQLKRYI 536 (794)
Q Consensus 465 ~~~~--~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~-~l~-~~~----~~~~~~~~~~~lr~yi 536 (794)
+..+ .+..|+..++.-. ..+-.+|.|+|-.+..+..-. .|. +.. -.+.+ .+.+....++
T Consensus 389 l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~-PD~EtR~aIL 455 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQP-PELETRIAIL 455 (617)
T ss_pred ccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCC-CCHHHHHHHH
Confidence 7543 3566777764332 112334456664432221100 011 000 01111 2333333333
Q ss_pred H-HHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 537 A-YAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 537 ~-~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
. .++.....+++++.++|... +.-++|.|+.++.--.+.|.+..+ .|+.+.++++++-
T Consensus 456 ~kka~~r~l~l~~eVi~yLa~r----------------~~rnvR~LegaL~rL~a~a~~~~~-~itl~la~~vL~~ 514 (617)
T PRK14086 456 RKKAVQEQLNAPPEVLEFIASR----------------ISRNIRELEGALIRVTAFASLNRQ-PVDLGLTEIVLRD 514 (617)
T ss_pred HHHHHhcCCCCCHHHHHHHHHh----------------ccCCHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHH
Confidence 2 23345678899999888763 223579999988877778887664 4888888877754
No 207
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00013 Score=81.60 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=41.3
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEeccccc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDK 464 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk 464 (794)
-||+||||||||+|+.++|+.+.-.+|.... +. +++ +.+ +..=.+......|++|.+||.
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydLeL--t~-------v~~--n~d--Lr~LL~~t~~kSIivIEDIDc 297 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDLEL--TE-------VKL--DSD--LRHLLLATPNKSILLIEDIDC 297 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEeee--cc-------ccC--cHH--HHHHHHhCCCCcEEEEeeccc
Confidence 5999999999999999999999999886322 11 111 111 222222334568999999994
No 208
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.65 E-value=0.00015 Score=89.98 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=37.3
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
...++|++..-+.++-.|...... |++|+||||||||++++.++..+..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~------------n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKN------------NPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCC------------ceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 334899988766666656554322 8899999999999999999987543
No 209
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.00014 Score=83.55 Aligned_cols=179 Identities=14% Similarity=0.158 Sum_probs=93.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC------cceeecCCccCccccccccc---cCCCCcccccccCceeecCCCeEEecc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP------RSVYTSGKSSSAAGLTASVA---KEPETGEFCIEAGALMLADNGICCIDE 461 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p------~~~~~~g~~ss~~gLt~~v~---~d~~~g~~~~~~Gal~lad~GIl~IDE 461 (794)
+++|+|+||+|||+|++++++.+. +..|.+.. .+...+. +......+.- .......+++|||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~-----~f~~~~~~~~~~~~~~~f~~----~~~~~~dvLlIDD 202 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-----KFLNDLVDSMKEGKLNEFRE----KYRKKVDVLLIDD 202 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH-----HHHHHHHHHHhcccHHHHHH----HHHhcCCEEEEec
Confidence 699999999999999999998642 22333211 1111111 1000001100 0011346999999
Q ss_pred cccCCh--hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC----------CCCCCCCCccCcccccCccccH
Q 003809 462 FDKMDI--RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG----------GRYDKSKPLKKHEDALAPAFTT 529 (794)
Q Consensus 462 ~dk~~~--~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~----------Gryd~~~~l~~~~~~~~~~~~~ 529 (794)
++.+.. ..+..++..+..-.- .| ...|+++.+++. .|+.....+ .+. +.+.
T Consensus 203 i~~l~~~~~~q~elf~~~n~l~~----~~-------k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v-----~i~-~pd~ 265 (440)
T PRK14088 203 VQFLIGKTGVQTELFHTFNELHD----SG-------KQIVICSDREPQKLSEFQDRLVSRFQMGLVA-----KLE-PPDE 265 (440)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHH----cC-------CeEEEECCCCHHHHHHHHHHHhhHHhcCceE-----eeC-CCCH
Confidence 997632 234555555532110 01 123333322221 122111111 111 1233
Q ss_pred HHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHH
Q 003809 530 AQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVA 608 (794)
Q Consensus 530 ~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eA 608 (794)
+.....+... ....-.+++++.++|.+. +.-++|.|+.++.--.+.|.+..+ .++...+.++
T Consensus 266 e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~----------------~~~~~R~L~g~l~~l~~~~~~~~~-~it~~~a~~~ 328 (440)
T PRK14088 266 ETRKKIARKMLEIEHGELPEEVLNFVAEN----------------VDDNLRRLRGAIIKLLVYKETTGE-EVDLKEAILL 328 (440)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHhc----------------cccCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 3333333222 223456889888888652 234679999999877888888775 4888888777
Q ss_pred HHHH
Q 003809 609 VRLL 612 (794)
Q Consensus 609 i~L~ 612 (794)
++-+
T Consensus 329 L~~~ 332 (440)
T PRK14088 329 LKDF 332 (440)
T ss_pred HHHH
Confidence 7643
No 210
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=5.7e-05 Score=82.78 Aligned_cols=100 Identities=24% Similarity=0.286 Sum_probs=56.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccc-cccCCCCcccccccCceeecCCC-eEEecccc-----
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTAS-VAKEPETGEFCIEAGALMLADNG-ICCIDEFD----- 463 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~-v~~d~~~g~~~~~~Gal~lad~G-Il~IDE~d----- 463 (794)
|||++||||||||++++-++.-+... |....+...+.|-+- |.+-..-=+|.. .+..| ++||||.|
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlD-YA~mTGGDVAPlG~qaVTkiH~lFDWak------kS~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLD-YAIMTGGDVAPLGAQAVTKIHKLFDWAK------KSRRGLLLFIDEADAFLCE 458 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCc-eehhcCCCccccchHHHHHHHHHHHHHh------hcccceEEEehhhHHHHHH
Confidence 89999999999999999999875532 211111111212111 111000001211 12334 78999998
Q ss_pred ----cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 464 ----KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 464 ----k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.|++..+.+|...+= +.|.. .-++.++-|+|.++
T Consensus 459 RnktymSEaqRsaLNAlLf-------RTGdq---SrdivLvlAtNrpg 496 (630)
T KOG0742|consen 459 RNKTYMSEAQRSALNALLF-------RTGDQ---SRDIVLVLATNRPG 496 (630)
T ss_pred hchhhhcHHHHHHHHHHHH-------Hhccc---ccceEEEeccCCcc
Confidence 688888888777761 11211 12466777788654
No 211
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.57 E-value=0.0003 Score=71.17 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=24.6
Q ss_pred cCCCeEEecccccCChhhHHHHHHHhhc
Q 003809 452 ADNGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 452 ad~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
+..-|++|||+++|++..+++|+..||+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~ 122 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE 122 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC
Confidence 3456999999999999999999999975
No 212
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00045 Score=84.60 Aligned_cols=175 Identities=20% Similarity=0.184 Sum_probs=89.4
Q ss_pred CCceechhh----HHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeec-CCccCcccc
Q 003809 355 GPTVFGHQD----IKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTS-GKSSSAAGL 429 (794)
Q Consensus 355 ~p~I~G~e~----vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~-g~~ss~~gL 429 (794)
+++|-|.+. +|.-+++.|.-+.......-+.-| .+|++||||||||.++++++...++..-.. -.....++.
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr---gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR---GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc---ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 456666554 455556655433221111111122 289999999999999999999766532210 000011111
Q ss_pred ccccccCCCCcccccccCceeec---CCCeEEecccccCCh-----------hhHHHHHHHhhccEEEEeecceEEeecC
Q 003809 430 TASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDKMDI-----------RDQVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 430 t~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~-----------~~~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
....+.+. +..+.- .+.-| .-.|+|.||||-+-+ +....|+..|. |...+ .
T Consensus 341 lskwvgEa---ERqlrl-lFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmd---------GldsR--g 405 (1080)
T KOG0732|consen 341 LSKWVGEA---ERQLRL-LFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD---------GLDSR--G 405 (1080)
T ss_pred hccccCcH---HHHHHH-HHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhcc---------CCCCC--C
Confidence 11111110 000000 00111 236999999993322 12334455542 22111 2
Q ss_pred ceEEEEecCCC---------CCCCCCCCCccCcccccCccccHHHHHHHHHHHhc--cCCcCCHHHHHHHHH
Q 003809 496 RTSILAAANPA---------GGRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKT--LKPKLSLEARKLLVD 556 (794)
Q Consensus 496 r~siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~--~~P~ls~ea~~~L~~ 556 (794)
.+.+|+|+|.. +||||+...+. ++.-.=|..|...++ ..|.++......|.+
T Consensus 406 qVvvigATnRpda~dpaLRRPgrfdref~f~---------lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~ 468 (1080)
T KOG0732|consen 406 QVVVIGATNRPDAIDPALRRPGRFDREFYFP---------LPDVDARAKILDIHTRKWEPPISRELLLWLAE 468 (1080)
T ss_pred ceEEEcccCCccccchhhcCCcccceeEeee---------CCchHHHHHHHHHhccCCCCCCCHHHHHHHHH
Confidence 58889999865 47777655544 454455666666653 457777765555543
No 213
>PHA01747 putative ATP-dependent protease
Probab=97.54 E-value=0.00022 Score=77.99 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=92.4
Q ss_pred HHHhhhhcCCceechh-hHHH--HHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCc
Q 003809 347 FNKIVDSIGPTVFGHQ-DIKR--AILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKS 423 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e-~vK~--alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ 423 (794)
++.|..|+--+--+.. ..|. .+|.-|+--+.. +.+ .-+.|++=.||+|||||++.+-+..++|.++ +|..
T Consensus 150 iDlLlrSiGyeP~~~~~r~k~~~l~L~RLiPlVE~--~~~---~~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~ 222 (425)
T PHA01747 150 YDDLLAAFGYDTDKMIRNDAVNRLTLPRLLPLFTS--PVS---KRPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEP 222 (425)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhhhheec--cCC---CCCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCC
Confidence 5677777654333321 2333 445445433320 110 1356999999999999999999999899887 4444
Q ss_pred cCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh----hhHHHHHHHhhccEEEEeecceEE--eecCce
Q 003809 424 SSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI----RDQVAIHEAMEQQTISITKAGIQA--TLNART 497 (794)
Q Consensus 424 ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~----~~~~~L~eame~~~isi~kaG~~~--~l~ar~ 497 (794)
.+.+-|+. +..++ ..|.+.+.| ++++||+..+.. +....|...|++|.++..+.+... +.++.+
T Consensus 223 ~TvA~LFy----N~~t~----~~GLVg~~D--~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~a 292 (425)
T PHA01747 223 PTYANLVY----DAKTN----ALGLVFLSN--GLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCI 292 (425)
T ss_pred CchHHheE----ecCCC----ceeEEeecc--EEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccce
Confidence 45544432 32333 456666554 689999997652 344567777999999887643333 677788
Q ss_pred EEEEecCCC
Q 003809 498 SILAAANPA 506 (794)
Q Consensus 498 siiAaaNP~ 506 (794)
+++-+.|+.
T Consensus 293 siVf~GNin 301 (425)
T PHA01747 293 PIIFAGNPD 301 (425)
T ss_pred eEEEecCCC
Confidence 999888876
No 214
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.00067 Score=74.43 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=66.9
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeE-EEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccc--
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINV-CIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTAS-- 432 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~ini-LLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~-- 432 (794)
.+|.||+.+++.+.-++..|.-. |. ||+||+|+||+++++.+++.+-.... .+ ...++...
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~------------ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~-~~---~h~D~~~~~~ 67 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFS------------HAHIIVGEDGIGKSLLAKEIALKILGKSQ-QR---EYVDIIEFKP 67 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC------------ceEEeECCCCCCHHHHHHHHHHHHcCCCC-CC---CCCCeEEecc
Confidence 46889999999999888777532 55 89999999999999999986421000 00 00011000
Q ss_pred ---------cccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhc
Q 003809 433 ---------VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 433 ---------v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
.+++- .++ +...+ ..+..-|++||+.++|+...+++|+..+|+
T Consensus 68 ~~~~~i~v~~ir~~--~~~-~~~~p-~~~~~kv~iI~~ad~m~~~a~naLLK~LEe 119 (313)
T PRK05564 68 INKKSIGVDDIRNI--IEE-VNKKP-YEGDKKVIIIYNSEKMTEQAQNAFLKTIEE 119 (313)
T ss_pred ccCCCCCHHHHHHH--HHH-HhcCc-ccCCceEEEEechhhcCHHHHHHHHHHhcC
Confidence 00000 000 00011 223556999999999999999999999975
No 215
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0017 Score=76.65 Aligned_cols=233 Identities=15% Similarity=0.118 Sum_probs=130.1
Q ss_pred HHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCcc---CccccccccccCCCCccccc
Q 003809 368 ILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSS---SAAGLTASVAKEPETGEFCI 444 (794)
Q Consensus 368 lll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~s---s~~gLt~~v~~d~~~g~~~~ 444 (794)
.+.+.+... ..+.+..+....-+||.|+||+|||++.+++++.+...++.....+ ..++.+.+-...-.......
T Consensus 412 ~l~~vl~p~--~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~ 489 (953)
T KOG0736|consen 412 ELVAVLSPQ--KQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRC 489 (953)
T ss_pred HHHHHhCcc--cCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhc
Confidence 455555433 3455555566778999999999999999999999998888532211 11111110000001112223
Q ss_pred ccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCcccccC
Q 003809 445 EAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHEDALA 524 (794)
Q Consensus 445 ~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~~ 524 (794)
.|-.+.+.+--++-||-..--+-..+..++..|..-... .-..+..++|+++...+
T Consensus 490 ~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~--------~~~~~~ivv~t~~s~~~---------------- 545 (953)
T KOG0736|consen 490 SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFK--------FSCPPVIVVATTSSIED---------------- 545 (953)
T ss_pred CceEEEEeccceeeecCCCchhHHHHHHHHHHHhccccc--------CCCCceEEEEecccccc----------------
Confidence 566677777777777777755555566666666411111 11235888899886541
Q ss_pred ccccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCC----CCCccccccCHHHHHHHHHHH--HHHHHhc---
Q 003809 525 PAFTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTT----PGSRVAYRMTVRQLEALIRLS--EAIARSH--- 595 (794)
Q Consensus 525 ~~~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~----~~~~~~~~iT~R~LesliRls--eA~Arl~--- 595 (794)
++.+...-+.... .-|.++++-+..+.++|..--..+.. ........++.+.|+++..-+ .+..++.
T Consensus 546 --lp~~i~~~f~~ei--~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~ 621 (953)
T KOG0736|consen 546 --LPADIQSLFLHEI--EVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG 621 (953)
T ss_pred --CCHHHHHhhhhhc--cCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc
Confidence 2222222221100 23666777676666766542221100 012234567888888776533 1111111
Q ss_pred ---------------CCCCcCHHHHHHHHHHHh----hhcccccCCcccccccc
Q 003809 596 ---------------LETQVHPRHVRVAVRLLK----TSVISVESSEIDLSEFQ 630 (794)
Q Consensus 596 ---------------~~~~V~~~dv~eAi~L~~----~s~~~~~~~~i~~~~~~ 630 (794)
-...++++|+..|+.-++ .+|--..-+.|.|+|..
T Consensus 622 l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVG 675 (953)
T KOG0736|consen 622 LAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVG 675 (953)
T ss_pred ccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhccc
Confidence 125799999999998444 46666677889998653
No 216
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.43 E-value=0.00033 Score=81.29 Aligned_cols=60 Identities=22% Similarity=0.161 Sum_probs=48.5
Q ss_pred cCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 446 AGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 446 ~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.|+|..|++|++=+=|+-|.+.+....|+.+-+++.+.-. +....++.+-.|||.+|-..
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~--~~~~~i~~D~vIiaHsNE~E 307 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGT--EGIGAIPFDGIILAHSNESE 307 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCC--CCcceeccceeEEecCCHHH
Confidence 5899999988776569999999999899999999987543 33456778899999999653
No 217
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.41 E-value=0.00042 Score=72.24 Aligned_cols=168 Identities=19% Similarity=0.255 Sum_probs=85.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC----C--cceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV----P--RSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~----p--~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk 464 (794)
.++|+|++|+|||+|+++++..+ | +.+|.+...... .+. ...++.....+ . -.+..--++|||+++.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~-~~~-~~~~~~~~~~~--~---~~~~~~DlL~iDDi~~ 108 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR-EFA-DALRDGEIEEF--K---DRLRSADLLIIDDIQF 108 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH-HHH-HHHHTTSHHHH--H---HHHCTSSEEEEETGGG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH-HHH-HHHHcccchhh--h---hhhhcCCEEEEecchh
Confidence 58999999999999999998763 2 123332110000 000 00111000000 0 0122346999999999
Q ss_pred CChhh--HHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCC-CCccC-----cccccCccccHHHHHHHH
Q 003809 465 MDIRD--QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKS-KPLKK-----HEDALAPAFTTAQLKRYI 536 (794)
Q Consensus 465 ~~~~~--~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~-~~l~~-----~~~~~~~~~~~~~lr~yi 536 (794)
+.... +..|+..++.-. ...-.+|.|++-.+..+..- ..+.. ..-.+.+ .+.+..++.+
T Consensus 109 l~~~~~~q~~lf~l~n~~~------------~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~-pd~~~r~~il 175 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRLI------------ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQP-PDDEDRRRIL 175 (219)
T ss_dssp GTTHHHHHHHHHHHHHHHH------------HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE-----HHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHH------------hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCC-CCHHHHHHHH
Confidence 87765 677777765332 11123344444333222110 00110 0011222 3444445554
Q ss_pred H-HHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHh
Q 003809 537 A-YAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARS 594 (794)
Q Consensus 537 ~-~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl 594 (794)
. .|+...-.+++++.++|... ++-++|.|+.++.--.+.|.+
T Consensus 176 ~~~a~~~~~~l~~~v~~~l~~~----------------~~~~~r~L~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 176 QKKAKERGIELPEEVIEYLARR----------------FRRDVRELEGALNRLDAYAQL 218 (219)
T ss_dssp HHHHHHTT--S-HHHHHHHHHH----------------TTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHh----------------hcCCHHHHHHHHHHHHHHhhc
Confidence 4 34556667999999888763 234689999999877777765
No 218
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00033 Score=76.45 Aligned_cols=122 Identities=18% Similarity=0.140 Sum_probs=68.2
Q ss_pred eechhhHHHHHHHHHh-CCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcceee---------------c
Q 003809 358 VFGHQDIKRAILLMLL-GGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVYT---------------S 420 (794)
Q Consensus 358 I~G~e~vK~alll~L~-gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~~---------------~ 420 (794)
++|++.+...++.... .|... | +||+||||+|||+++..+++.+...... .
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~------------halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLP------------HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCC------------ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5666666555555554 44211 7 9999999999999999999875421110 0
Q ss_pred CCccCccccccccccCCCCccccc----ccCcee--ecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeec
Q 003809 421 GKSSSAAGLTASVAKEPETGEFCI----EAGALM--LADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLN 494 (794)
Q Consensus 421 g~~ss~~gLt~~v~~d~~~g~~~~----~~Gal~--lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ 494 (794)
|.......++++-.+...-..-.+ +..... .+..-|++|||+|.|+...+++|+..||.. +
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep-------------~ 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------------P 137 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------C
Confidence 000011111111111100000000 000011 123359999999999999999999999754 3
Q ss_pred CceEEEEecC
Q 003809 495 ARTSILAAAN 504 (794)
Q Consensus 495 ar~siiAaaN 504 (794)
.++.+|-+||
T Consensus 138 ~~~~~il~~n 147 (325)
T COG0470 138 KNTRFILITN 147 (325)
T ss_pred CCeEEEEEcC
Confidence 4566666777
No 219
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.00063 Score=76.22 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=39.9
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhC
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.+|+||+.+++.|.-++..|.-. | +||.||+|+||++++..+++.+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~------------HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLH------------HAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCC------------ceEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999988887532 5 8999999999999999998874
No 220
>PRK06526 transposase; Provisional
Probab=97.34 E-value=5.9e-05 Score=80.32 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=55.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC--h
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD--I 467 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~--~ 467 (794)
-|++|+||||||||.|+.+++..+...-+.. ...+...+...+......+. +....-.+..-.+++|||++..+ +
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v-~f~t~~~l~~~l~~~~~~~~--~~~~l~~l~~~dlLIIDD~g~~~~~~ 175 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRV-LFATAAQWVARLAAAHHAGR--LQAELVKLGRYPLLIVDEVGYIPFEP 175 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCch-hhhhHHHHHHHHHHHHhcCc--HHHHHHHhccCCEEEEcccccCCCCH
Confidence 3899999999999999999987643211110 00111111111110000111 00000112334689999999764 5
Q ss_pred hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC
Q 003809 468 RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG 508 (794)
Q Consensus 468 ~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G 508 (794)
..+..|++.++... . +.++|.|+|-.++
T Consensus 176 ~~~~~L~~li~~r~------------~-~~s~IitSn~~~~ 203 (254)
T PRK06526 176 EAANLFFQLVSSRY------------E-RASLIVTSNKPFG 203 (254)
T ss_pred HHHHHHHHHHHHHH------------h-cCCEEEEcCCCHH
Confidence 56667888886432 1 1357788886553
No 221
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00042 Score=78.42 Aligned_cols=25 Identities=12% Similarity=0.307 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.|||+||||||||.+||.+.+.+..
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNA 282 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNA 282 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcC
Confidence 4899999999999999999998643
No 222
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.28 E-value=0.00076 Score=83.40 Aligned_cols=223 Identities=17% Similarity=0.147 Sum_probs=122.6
Q ss_pred eEEEeCCCcchHHHHHHH-HHhh-CCcceeecCC-ccCccccccccccCCCCcccccccCceeec-----CCCeEEeccc
Q 003809 391 NVCIVGDPSCAKSQFLKY-AAGI-VPRSVYTSGK-SSSAAGLTASVAKEPETGEFCIEAGALMLA-----DNGICCIDEF 462 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~-i~~~-~p~~~~~~g~-~ss~~gLt~~v~~d~~~g~~~~~~Gal~la-----d~GIl~IDE~ 462 (794)
.++++||||+|||+|.-- +-.. .-.-++..-. .++.......+.+. .++....|.+.+. ..+|+|.|||
T Consensus 1496 ~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~---t~yy~~tg~~~l~PK~~vK~lVLFcDeI 1572 (3164)
T COG5245 1496 SYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERE---TEYYPNTGVVRLYPKPVVKDLVLFCDEI 1572 (3164)
T ss_pred eEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhh---ceeeccCCeEEEccCcchhheEEEeecc
Confidence 489999999999997522 1111 1111111111 11111111112221 1222222333322 3689999999
Q ss_pred c------cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC--CCCCCCCCccCcccccCccc-cHHHHH
Q 003809 463 D------KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG--GRYDKSKPLKKHEDALAPAF-TTAQLK 533 (794)
Q Consensus 463 d------k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~--Gryd~~~~l~~~~~~~~~~~-~~~~lr 533 (794)
+ ..++.+...|.+.||.|-+.-.-+....++ ++..+.+|+||.. ||-+-...+.++...+--.+ +..-|+
T Consensus 1573 nLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~ype~~SL~ 1651 (3164)
T COG5245 1573 NLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYPELASLR 1651 (3164)
T ss_pred CCccccccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCCCCcccCccHHHHhcCceEEEecCcchhhHH
Confidence 8 234555667778888766554444444454 4789999999984 65544333321111111001 111122
Q ss_pred -HHHHHHh---ccCC---cCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH--
Q 003809 534 -RYIAYAK---TLKP---KLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH-- 604 (794)
Q Consensus 534 -~yi~~ar---~~~P---~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d-- 604 (794)
-|-++-. .+.| .++++....-++.|..+|.....+ ...+|..++|.|-+++|--...|--.-+. -...+
T Consensus 1652 ~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~-lq~~y~y~pReLtR~lr~i~~yaeT~~~t-~~~slI~ 1729 (3164)
T COG5245 1652 NIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFF-LQMNYGYKPRELTRSLRAIFGYAETRIDT-PDVSLII 1729 (3164)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cccccccChHHHHHHHHHHHhHHhcCCCC-CcHHHHH
Confidence 1211111 2343 467888888899999999876643 34568999999999999776655544332 23333
Q ss_pred --HHHHHHHHhhhcccc
Q 003809 605 --VRVAVRLLKTSVISV 619 (794)
Q Consensus 605 --v~eAi~L~~~s~~~~ 619 (794)
.-+|++.+-.+++++
T Consensus 1730 ~wy~ea~r~~~dRLV~q 1746 (3164)
T COG5245 1730 DWYCEAIREKIDRLVQQ 1746 (3164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 356888888877765
No 223
>PRK08116 hypothetical protein; Validated
Probab=97.24 E-value=0.00011 Score=79.05 Aligned_cols=97 Identities=9% Similarity=0.152 Sum_probs=55.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc----ceeecCCccCccccccccccCCC-CcccccccCce-eecCCCeEEecccc-
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR----SVYTSGKSSSAAGLTASVAKEPE-TGEFCIEAGAL-MLADNGICCIDEFD- 463 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~----~~~~~g~~ss~~gLt~~v~~d~~-~g~~~~~~Gal-~lad~GIl~IDE~d- 463 (794)
.++|+|+||||||+|+.++++.+.. .+|.+ ...+...+..... .+... ....+ .+.+..+|+|||+.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----~~~ll~~i~~~~~~~~~~~-~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----FPQLLNRIKSTYKSSGKED-ENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----HHHHHHHHHHHHhcccccc-HHHHHHHhcCCCEEEEecccC
Confidence 6999999999999999999987532 12221 1122211110000 00000 00011 13345699999994
Q ss_pred -cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCC
Q 003809 464 -KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANP 505 (794)
Q Consensus 464 -k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP 505 (794)
+.++..+..|++.++... .....+|.|+|-
T Consensus 190 e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~ 220 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNL 220 (268)
T ss_pred CCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCC
Confidence 567777888998886542 122457788884
No 224
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.0026 Score=75.88 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=40.9
Q ss_pred hHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc
Q 003809 346 FFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS 416 (794)
Q Consensus 346 i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~ 416 (794)
+.++..-.-.-++.||+...+.+.-.+...... . ..|. -++|+||||+|||++++.+++.+...
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-~-----~~~~-illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-N-----APKR-ILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-c-----CCCc-EEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 344444444456888887666555444433211 0 0111 28999999999999999999987654
No 225
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.19 E-value=0.0007 Score=70.98 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=64.5
Q ss_pred eechhhHHHHHHH---HHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc-c---eeecCC-ccCcccc
Q 003809 358 VFGHQDIKRAILL---MLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR-S---VYTSGK-SSSAAGL 429 (794)
Q Consensus 358 I~G~e~vK~alll---~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~-~---~~~~g~-~ss~~gL 429 (794)
++|.+.-|+.|+- +.+.|.+- -|+||.|++|||||.+++++...... + +.+... ...-..+
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pa-----------nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l 97 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPA-----------NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPEL 97 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCC-----------cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHH
Confidence 5566666665533 33444332 19999999999999999999876422 1 111000 0000011
Q ss_pred ccccccCCCCcccccccCceeecCCCeEEecccc-cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 430 TASVAKEPETGEFCIEAGALMLADNGICCIDEFD-KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 430 t~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~d-k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
... .++ ....-|+|+|++. ......-..|-.+|| |.....|.++.|.||+|..
T Consensus 98 ~~~-l~~--------------~~~kFIlf~DDLsFe~~d~~yk~LKs~Le---------Ggle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 98 LDL-LRD--------------RPYKFILFCDDLSFEEGDTEYKALKSVLE---------GGLEARPDNVLIYATSNRR 151 (249)
T ss_pred HHH-Hhc--------------CCCCEEEEecCCCCCCCcHHHHHHHHHhc---------CccccCCCcEEEEEecchh
Confidence 100 000 1123599999986 333334455666664 3334558899999999964
No 226
>PRK12377 putative replication protein; Provisional
Probab=97.17 E-value=0.00014 Score=77.11 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=56.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccc--cCChh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFD--KMDIR 468 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~d--k~~~~ 468 (794)
+++|.|+||||||+|+.+++..+...-+.. ...+...+...+......+.. ...-.-.+..--+|+|||++ ..++.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v-~~i~~~~l~~~l~~~~~~~~~-~~~~l~~l~~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSRLHESYDNGQS-GEKFLQELCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCe-EEEEHHHHHHHHHHHHhccch-HHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence 799999999999999999998764321110 001111222211110001100 00000112455799999995 56677
Q ss_pred hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCC
Q 003809 469 DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANP 505 (794)
Q Consensus 469 ~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP 505 (794)
.+..|+++++... ..+.++|-|+|-
T Consensus 181 ~~~~l~~ii~~R~------------~~~~ptiitSNl 205 (248)
T PRK12377 181 EQVVLNQIIDRRT------------ASMRSVGMLTNL 205 (248)
T ss_pred HHHHHHHHHHHHH------------hcCCCEEEEcCC
Confidence 7888999887553 223456677883
No 227
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00026 Score=76.29 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=50.8
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccc---eeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGD---INVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~---iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
+++.+--.|.||+.+|+++.++|-....+..-+ -.+|-. -|||++||+|+|||.++|.+++++..++.
T Consensus 9 IV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~-~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFi 79 (444)
T COG1220 9 IVSELDRYIIGQDEAKKAVAIALRNRWRRMQLE-EELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFI 79 (444)
T ss_pred HHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcC-HHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 444455679999999999999997665432111 123333 29999999999999999999999877655
No 228
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.16 E-value=0.0005 Score=63.30 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=57.7
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChh---
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR--- 468 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~--- 468 (794)
|+|+|+||+|||.+++.+++.+-........ ... ..+.+...-| -|- ....++++|||......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~----~~v---y~~~~~~~~w---~gY---~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTK----DSV---YTRNPGDKFW---DGY---QGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCC----CcE---EeCCCccchh---hcc---CCCcEEEEeecCccccccch
Confidence 5899999999999999988764432210000 000 0111111111 000 13358999999977754
Q ss_pred -hHHHHHHHhhccEEEEeecceE---EeecCceEEEEecC
Q 003809 469 -DQVAIHEAMEQQTISITKAGIQ---ATLNARTSILAAAN 504 (794)
Q Consensus 469 -~~~~L~eame~~~isi~kaG~~---~~l~ar~siiAaaN 504 (794)
....|...+.........|+.. ..+++ -.|++|+|
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 5667888888877777655543 23332 45667777
No 229
>PRK08181 transposase; Validated
Probab=97.09 E-value=0.00012 Score=78.46 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=55.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh--h
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI--R 468 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~--~ 468 (794)
|++|+||||||||+|+.+++..+...-+.. ...+...|...+......+. ...-.-.+..--+++|||++..+. .
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v-~f~~~~~L~~~l~~a~~~~~--~~~~l~~l~~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRV-LFTRTTDLVQKLQVARRELQ--LESAIAKLDKFDLLILDDLAYVTKDQA 184 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCce-eeeeHHHHHHHHHHHHhCCc--HHHHHHHHhcCCEEEEeccccccCCHH
Confidence 899999999999999999987543211100 00112222222111000010 000000123346999999986654 4
Q ss_pred hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC
Q 003809 469 DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG 508 (794)
Q Consensus 469 ~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G 508 (794)
.+..|+++++... . +.++|.|+|-.++
T Consensus 185 ~~~~Lf~lin~R~------------~-~~s~IiTSN~~~~ 211 (269)
T PRK08181 185 ETSVLFELISARY------------E-RRSILITANQPFG 211 (269)
T ss_pred HHHHHHHHHHHHH------------h-CCCEEEEcCCCHH
Confidence 4567899886432 1 2357788886653
No 230
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.09 E-value=0.00065 Score=69.69 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=69.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR 468 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~ 468 (794)
+.-++|+|+-|+|||++++.+... .|..... +...+++ ...+...-|++|||++.+...
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~------------~~~~kd~-----~~~l~~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDSIN------------DFDDKDF-----LEQLQGKWIVELDELDGLSKK 110 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHH----hccCccc------------cCCCcHH-----HHHHHHhHheeHHHHhhcchh
Confidence 457899999999999999988432 3332110 0011111 112334468999999999999
Q ss_pred hHHHHHHHhhccEEEEeec-c-eEEeecCceEEEEecCCCC
Q 003809 469 DQVAIHEAMEQQTISITKA-G-IQATLNARTSILAAANPAG 507 (794)
Q Consensus 469 ~~~~L~eame~~~isi~ka-G-~~~~l~ar~siiAaaNP~~ 507 (794)
+...|-..+...+.++.++ | ....+|-+++++||+|...
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~ 151 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDD 151 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcc
Confidence 9999999998888887654 3 3567788899999999754
No 231
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0004 Score=74.52 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
=|||.||||||||.|.+++++-+
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhh
Confidence 48999999999999999999865
No 232
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.03 E-value=0.0011 Score=65.87 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=60.0
Q ss_pred chhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcceee---cCCc--------cCcc
Q 003809 360 GHQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVYT---SGKS--------SSAA 427 (794)
Q Consensus 360 G~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~~---~g~~--------ss~~ 427 (794)
||+.+++.|.-++..+.-. | +||+||+|+||++++..+++.+--.... ++.- ....
T Consensus 1 gq~~~~~~L~~~~~~~~l~------------ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLP------------HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcCCcc------------eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 7888888888777776432 5 7999999999999999988863211110 0000 0000
Q ss_pred ccccccccCCCCc--ccccc-----cCcee----ecCCCeEEecccccCChhhHHHHHHHhhcc
Q 003809 428 GLTASVAKEPETG--EFCIE-----AGALM----LADNGICCIDEFDKMDIRDQVAIHEAMEQQ 480 (794)
Q Consensus 428 gLt~~v~~d~~~g--~~~~~-----~Gal~----lad~GIl~IDE~dk~~~~~~~~L~eame~~ 480 (794)
++. .+. +... ...++ ...+. .+..-|++||++++|+...+++|+..||+-
T Consensus 69 d~~--~~~-~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep 129 (162)
T PF13177_consen 69 DFI--IIK-PDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP 129 (162)
T ss_dssp TEE--EEE-TTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST
T ss_pred ceE--EEe-cccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC
Confidence 100 000 0000 00000 00000 123449999999999999999999999853
No 233
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.0015 Score=72.24 Aligned_cols=107 Identities=11% Similarity=0.090 Sum_probs=65.4
Q ss_pred ceec-hhhHHHHHHHHHhCCcccccCCCcccccceeE-EEeCCCcchHHHHHHHHHhhCCcce----eecCC--------
Q 003809 357 TVFG-HQDIKRAILLMLLGGVHKLTHEGINLRGDINV-CIVGDPSCAKSQFLKYAAGIVPRSV----YTSGK-------- 422 (794)
Q Consensus 357 ~I~G-~e~vK~alll~L~gg~~~~~~~g~~~Rg~ini-LLvG~PGtGKS~Ll~~i~~~~p~~~----~~~g~-------- 422 (794)
.|.| |+.+++.+.-++-.|.-. |. ||+||+|+||+++++.+++.+--.. ..+|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~------------ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLS------------HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCC------------ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHh
Confidence 4666 888888887777766432 55 9999999999999999988742111 01110
Q ss_pred ccCccccccccccCCCCccccc----------ccCceeecCCCeEEecccccCChhhHHHHHHHhhc
Q 003809 423 SSSAAGLTASVAKEPETGEFCI----------EAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 423 ~ss~~gLt~~v~~d~~~g~~~~----------~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
..+-.++.- +.. .+....+ ...+ ..+..-|++|||+++|+...+++|+..||+
T Consensus 74 ~~~hpD~~~-i~~--~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEE 136 (329)
T PRK08058 74 SGNHPDVHL-VAP--DGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEE 136 (329)
T ss_pred cCCCCCEEE-ecc--ccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcC
Confidence 000011100 000 0000000 0011 234556999999999999999999999985
No 234
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.01 E-value=0.00055 Score=88.07 Aligned_cols=116 Identities=15% Similarity=0.258 Sum_probs=88.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec--CCccCccccccccccCCCCcccccccCceeec--CCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS--GKSSSAAGLTASVAKEPETGEFCIEAGALMLA--DNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~--g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la--d~GIl~IDE~dk~~ 466 (794)
.+||.||.|+|||.+++.+++.....+... ........+.++.+- ..+|....+-|+++.| +|-.+++||++..+
T Consensus 442 pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~-~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVA-DDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhc-CCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 799999999999999999999877655431 111122223331111 2467777788999988 57799999999999
Q ss_pred hhhHHHHHHHhhc-cEEEEeecceEEeecCceEEEEecCCCC
Q 003809 467 IRDQVAIHEAMEQ-QTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 467 ~~~~~~L~eame~-~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.+...+|...+++ ..+.+...........++.++|+-||.+
T Consensus 521 ~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~ 562 (1856)
T KOG1808|consen 521 HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG 562 (1856)
T ss_pred hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcc
Confidence 9999999999987 8888876666666677899999999984
No 235
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=97.00 E-value=0.0032 Score=57.00 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 545 KLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 545 ~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
.+++++...|...+.. ..+|.|...+++|+|.++|.|..++.|+.+||.+|+.+
T Consensus 42 ~l~~~~~~~l~~~~~~-------------~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 42 PLSSEAKKLLEQAAEK-------------LNLSARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred CCCHHHHHHHHHHHHH-------------cCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 4677777777665543 46899999999999999999999999999999999875
No 236
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=96.95 E-value=0.0018 Score=75.50 Aligned_cols=180 Identities=18% Similarity=0.196 Sum_probs=102.0
Q ss_pred CccccccccccCCCCcc-----cccccCceeecCCCeEEecccccCC-hhhHHHHHHHhhccEEEEeecce---------
Q 003809 425 SAAGLTASVAKEPETGE-----FCIEAGALMLADNGICCIDEFDKMD-IRDQVAIHEAMEQQTISITKAGI--------- 489 (794)
Q Consensus 425 s~~gLt~~v~~d~~~g~-----~~~~~Gal~lad~GIl~IDE~dk~~-~~~~~~L~eame~~~isi~kaG~--------- 489 (794)
+...|++.+......|. ..++||+|..|+||+|+|+--+-+. +.....|..++.++.+.+...+.
T Consensus 299 t~~nLfG~Ie~~~~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l 378 (509)
T PF13654_consen 299 TYSNLFGRIEYESEMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSL 378 (509)
T ss_dssp -HHHHH-EE-----------GGGGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-
T ss_pred CHHHCcEEEEEECCCCCEecCcceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCC
Confidence 44456666555443332 3468999999999999999999776 56788999999999999975530
Q ss_pred -EEeecCceEEEEecCCCC----CCCCCCCC-ccCcccccC--ccccHHHHHHHHHHHhc-----cCCcCCHHHHHHHHH
Q 003809 490 -QATLNARTSILAAANPAG----GRYDKSKP-LKKHEDALA--PAFTTAQLKRYIAYAKT-----LKPKLSLEARKLLVD 556 (794)
Q Consensus 490 -~~~l~ar~siiAaaNP~~----Gryd~~~~-l~~~~~~~~--~~~~~~~lr~yi~~ar~-----~~P~ls~ea~~~L~~ 556 (794)
....|.++-||-..++.- ..||+... +..-....+ -..+.+-++.|+.|... --|.|+.+|...|++
T Consensus 379 ~PepIpl~vKVILiG~~~~y~~L~~~D~dF~~lFkv~aef~~~~~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~ 458 (509)
T PF13654_consen 379 EPEPIPLDVKVILIGDRELYYLLYEYDPDFYKLFKVKAEFDSEMPRTEENIRQYARFIASICQKEGLPPFDRSAVARLIE 458 (509)
T ss_dssp B-S-EE---EEEEEE-TTHHHHS-HHHHHHHHHHSEEEE--SEEE--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHH
T ss_pred CCCCcceEEEEEEEcCHHHHHHHHHhCHHHHhCCCEEEEccccCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 112334444444444331 01111000 000000111 12466778888887763 358899999999999
Q ss_pred HHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 557 SYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 557 ~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
+..++-+ ....+....|..|++-|-..|+....+.|+.+||..|+.--
T Consensus 459 ~~~R~~q--------~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r 506 (509)
T PF13654_consen 459 YSARLDQ--------DKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEER 506 (509)
T ss_dssp HHHHCC---------SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH-
T ss_pred HHHHHhC--------CEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHcc
Confidence 9888711 13556778899999999999999999999999999999753
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.00027 Score=75.33 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=70.2
Q ss_pred eechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCC
Q 003809 358 VFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEP 437 (794)
Q Consensus 358 I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~ 437 (794)
+-+...+.+..+..+........ ++. |++|+|+||||||.|+-+++..+-..-. +-...+.+.+...+....
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~------~~~-nl~l~G~~G~GKThLa~Ai~~~l~~~g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 81 FEFQPGIDKKALEDLASLVEFFE------RGE-NLVLLGPPGVGKTHLAIAIGNELLKAGI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred ccCCcchhHHHHHHHHHHHHHhc------cCC-cEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEEEHHHHHHHHHHHH
Confidence 44455555555555554442211 111 8999999999999999999887543100 001112222222211111
Q ss_pred CCcccccccCcee-ecCCCeEEeccccc--CChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCC
Q 003809 438 ETGEFCIEAGALM-LADNGICCIDEFDK--MDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYD 511 (794)
Q Consensus 438 ~~g~~~~~~Gal~-lad~GIl~IDE~dk--~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd 511 (794)
..|. .+.-.+. +..--+|+|||+.. ++....+.+++.+.+..-+ +.. +.|+|-..+.++
T Consensus 153 ~~~~--~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~------------~~~-~~tsN~~~~~~~ 214 (254)
T COG1484 153 DEGR--LEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYES------------RSL-IITSNLSFGEWD 214 (254)
T ss_pred hcCc--hHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhh------------ccc-eeecCCChHHHH
Confidence 1111 1111112 33456999999997 4554677888877655422 233 788887665443
No 238
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=96.90 E-value=0.011 Score=66.29 Aligned_cols=165 Identities=21% Similarity=0.212 Sum_probs=102.8
Q ss_pred CCeEEecccc----cCCh----hhHHHHHHHhhccEEEEeecceE-Ee-ecCceEEEEecCCCC--CCCCC-C------C
Q 003809 454 NGICCIDEFD----KMDI----RDQVAIHEAMEQQTISITKAGIQ-AT-LNARTSILAAANPAG--GRYDK-S------K 514 (794)
Q Consensus 454 ~GIl~IDE~d----k~~~----~~~~~L~eame~~~isi~kaG~~-~~-l~ar~siiAaaNP~~--Gryd~-~------~ 514 (794)
+..++.||+. .+.. .....|+++-..+.+++.+.+.. .. -+.++++++++.|.. ..+-. . .
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~~~~~~~~~~~ 229 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREILSAEDPEFRGD 229 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHhhhhcccccCC
Confidence 3467889987 3333 45677888888888888765532 23 357899999998863 11110 0 0
Q ss_pred Ccc------------Cccc--ccCccccHHHHHHHHHHHhc----------cCC---cCCHHHHHHHHHHHHHhccCCCC
Q 003809 515 PLK------------KHED--ALAPAFTTAQLKRYIAYAKT----------LKP---KLSLEARKLLVDSYVALRRGDTT 567 (794)
Q Consensus 515 ~l~------------~~~~--~~~~~~~~~~lr~yi~~ar~----------~~P---~ls~ea~~~L~~~Y~~lR~~~~~ 567 (794)
.+. .... ......+.+.+..|-...+. ..| .++++|...+.++|..++.....
T Consensus 230 Gll~RfL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ls~eA~~~~~~~~~~~~~~~~~ 309 (378)
T PF13148_consen 230 GLLARFLFVIPDSRKGRRFEFPVPEPIDDEALEAYHERIKELLDWPPEDGSDEPIVLELSDEAKELFREWYNELENELRQ 309 (378)
T ss_pred ChHhheeeeccCcccccccccCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCeEEecCHHHHHHHHHHHHHHHHHhhc
Confidence 111 0000 11111223444444332221 112 68999999999999988766421
Q ss_pred CCCcc-ccccCHHHHHHHHHHHHHHHHhc-----CCCCcCHHHHHHHHHHHhhhccc
Q 003809 568 PGSRV-AYRMTVRQLEALIRLSEAIARSH-----LETQVHPRHVRVAVRLLKTSVIS 618 (794)
Q Consensus 568 ~~~~~-~~~iT~R~LesliRlseA~Arl~-----~~~~V~~~dv~eAi~L~~~s~~~ 618 (794)
..+.. -..+-.|.-..++|+|-.++-++ ....|+.+++..|+.|.+..+.+
T Consensus 310 ~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~~ 366 (378)
T PF13148_consen 310 PGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLEH 366 (378)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHHH
Confidence 11111 12234577788999999999999 88999999999999999877654
No 239
>PRK09183 transposase/IS protein; Provisional
Probab=96.85 E-value=0.0003 Score=75.24 Aligned_cols=101 Identities=14% Similarity=0.242 Sum_probs=53.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCccc--ccccCceeecCCCeEEecccccC--C
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEF--CIEAGALMLADNGICCIDEFDKM--D 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~--~~~~Gal~lad~GIl~IDE~dk~--~ 466 (794)
|++|+||||||||+|+.+++..+...-+.. ...+...+...+......+.. .+.. . .....+++|||++.. +
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v-~~~~~~~l~~~l~~a~~~~~~~~~~~~-~--~~~~dlLiiDdlg~~~~~ 179 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKV-RFTTAADLLLQLSTAQRQGRYKTTLQR-G--VMAPRLLIIDEIGYLPFS 179 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-EEEeHHHHHHHHHHHHHCCcHHHHHHH-H--hcCCCEEEEcccccCCCC
Confidence 899999999999999999976542211000 000111121111000000110 0110 0 123469999999964 4
Q ss_pred hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC
Q 003809 467 IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG 508 (794)
Q Consensus 467 ~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G 508 (794)
......|+++++... . +-++|.|+|..++
T Consensus 180 ~~~~~~lf~li~~r~------------~-~~s~iiTsn~~~~ 208 (259)
T PRK09183 180 QEEANLFFQVIAKRY------------E-KGSMILTSNLPFG 208 (259)
T ss_pred hHHHHHHHHHHHHHH------------h-cCcEEEecCCCHH
Confidence 445557888875432 0 1246778886653
No 240
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0073 Score=68.13 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=100.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc------ceeecCCccCcccccc---ccccCCCCcccccccCceeecCCCeEEecc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR------SVYTSGKSSSAAGLTA---SVAKEPETGEFCIEAGALMLADNGICCIDE 461 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~------~~~~~g~~ss~~gLt~---~v~~d~~~g~~~~~~Gal~lad~GIl~IDE 461 (794)
.++|+|++|.|||+|+++++..+-. -+|.+ +...+. ...++....+|.-. . .-.+++||+
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~-----se~f~~~~v~a~~~~~~~~Fk~~-----y-~~dlllIDD 183 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT-----SEDFTNDFVKALRDNEMEKFKEK-----Y-SLDLLLIDD 183 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc-----HHHHHHHHHHHHHhhhHHHHHHh-----h-ccCeeeech
Confidence 6999999999999999999987422 22221 111110 01111111111100 0 235899999
Q ss_pred cccCChh--hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCC-Ccc-Cc----ccccCccccHHHHH
Q 003809 462 FDKMDIR--DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSK-PLK-KH----EDALAPAFTTAQLK 533 (794)
Q Consensus 462 ~dk~~~~--~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~-~l~-~~----~~~~~~~~~~~~lr 533 (794)
++.+..+ .+..++.....-. .+.. +|+.|+...+....... .|. +. .-.+.++ +.+..-
T Consensus 184 iq~l~gk~~~qeefFh~FN~l~-----------~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~P-d~e~r~ 250 (408)
T COG0593 184 IQFLAGKERTQEEFFHTFNALL-----------ENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPP-DDETRL 250 (408)
T ss_pred HhHhcCChhHHHHHHHHHHHHH-----------hcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCC-CHHHHH
Confidence 9976554 3555555542110 0011 33444433322111100 000 00 0112222 222222
Q ss_pred HHHH-HHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 534 RYIA-YAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 534 ~yi~-~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
..+. .+......+++++..+|... +.=++|+|+..+..--+.|....+ .+|...|.++++-+
T Consensus 251 aiL~kka~~~~~~i~~ev~~~la~~----------------~~~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~ 313 (408)
T COG0593 251 AILRKKAEDRGIEIPDEVLEFLAKR----------------LDRNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDL 313 (408)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHH----------------hhccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHh
Confidence 2222 23346678899988888752 234579999999888888888887 79999999999887
Q ss_pred hhhcc
Q 003809 613 KTSVI 617 (794)
Q Consensus 613 ~~s~~ 617 (794)
...-.
T Consensus 314 ~~~~~ 318 (408)
T COG0593 314 LRAGE 318 (408)
T ss_pred hcccc
Confidence 66544
No 241
>PRK04132 replication factor C small subunit; Provisional
Probab=96.78 E-value=0.0062 Score=74.59 Aligned_cols=176 Identities=15% Similarity=0.157 Sum_probs=92.6
Q ss_pred eEEEeC--CCcchHHHHHHHHHhhCCc-----ceeecCCccCccccccccccCCCCcccc-cccCceeecCCCeEEeccc
Q 003809 391 NVCIVG--DPSCAKSQFLKYAAGIVPR-----SVYTSGKSSSAAGLTASVAKEPETGEFC-IEAGALMLADNGICCIDEF 462 (794)
Q Consensus 391 niLLvG--~PGtGKS~Ll~~i~~~~p~-----~~~~~g~~ss~~gLt~~v~~d~~~g~~~-~~~Gal~lad~GIl~IDE~ 462 (794)
|-+.-| |++.|||++++++++.+-. .+..- ..+...|.. .+++.- .++. ..+ +.-++.-|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lEl-NASd~rgid--~IR~iI-k~~a~~~~--~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLEL-NASDERGIN--VIREKV-KEFARTKP--IGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEE-eCCCcccHH--HHHHHH-HHHHhcCC--cCCCCCEEEEEECc
Confidence 456678 9999999999999987621 12211 111111111 111100 0000 000 10012359999999
Q ss_pred ccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCcccc-cCccccHHHHHHHHHHHh-
Q 003809 463 DKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHEDA-LAPAFTTAQLKRYIAYAK- 540 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~~-~~~~~~~~~lr~yi~~ar- 540 (794)
|+|+...|++|+..||.- +..+.+|.+||+...-. .++..+-.. .-++++.+.+..++..+.
T Consensus 640 D~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~~kIi---~tIrSRC~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 640 DALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSSKII---EPIQSRCAIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred ccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChhhCc---hHHhhhceEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999852 23466777777653111 111111111 113455666666665443
Q ss_pred ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 541 TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 541 ~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
+-...+++++...|... ..-++|....++..+.+ . ...|+.++|..+.
T Consensus 704 ~Egi~i~~e~L~~Ia~~----------------s~GDlR~AIn~Lq~~~~---~--~~~It~~~V~~~~ 751 (846)
T PRK04132 704 NEGLELTEEGLQAILYI----------------AEGDMRRAINILQAAAA---L--DDKITDENVFLVA 751 (846)
T ss_pred hcCCCCCHHHHHHHHHH----------------cCCCHHHHHHHHHHHHH---h--cCCCCHHHHHHHh
Confidence 23445677776666542 11234665555543322 2 2457777766543
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.74 E-value=0.00094 Score=73.12 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+++|+|+||||||.|+.+++..+.
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998864
No 243
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.0039 Score=68.54 Aligned_cols=48 Identities=4% Similarity=-0.095 Sum_probs=39.9
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+.+|+||+.++..+.-++-.|.-. . ..||+||+|+||+.++.++++.+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~---h--------a~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIA---P--------AYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCC---c--------eEEEECCCCCCHHHHHHHHHHHH
Confidence 457999999999998888777421 1 79999999999999999888774
No 244
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.71 E-value=0.0019 Score=72.28 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=65.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccC---CCCcccccccCceeecCCC-eEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKE---PETGEFCIEAGALMLADNG-ICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d---~~~g~~~~~~Gal~lad~G-Il~IDE~dk~~ 466 (794)
++.|.|++|+|||+|+......+|..-- .-..-......+.+. ..++...+..-+-.++.+. +||+|||.--+
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~~~k---~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~D 140 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPIKRK---RRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVTD 140 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCcccc---ccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeeccc
Confidence 5999999999999999999998875210 000000011100000 0011111222222334444 99999998766
Q ss_pred hhhH---HHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCcccccCccccHHHHHHHHHHHh
Q 003809 467 IRDQ---VAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAK 540 (794)
Q Consensus 467 ~~~~---~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar 540 (794)
..+- ..|++.+ +...+.++||+|-.+. +.....+..+.+..+|...+
T Consensus 141 iaDAmil~rLf~~l---------------~~~gvvlVaTSN~~P~------------~Ly~~gl~r~~Flp~I~~l~ 190 (362)
T PF03969_consen 141 IADAMILKRLFEAL---------------FKRGVVLVATSNRPPE------------DLYKNGLQRERFLPFIDLLK 190 (362)
T ss_pred hhHHHHHHHHHHHH---------------HHCCCEEEecCCCChH------------HHcCCcccHHHHHHHHHHHH
Confidence 6553 3344443 2335788999997761 22233455555666665444
No 245
>PRK06921 hypothetical protein; Provisional
Probab=96.68 E-value=0.00059 Score=73.22 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+++|+|+||||||+|+.++++.+.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999998754
No 246
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.65 E-value=0.00025 Score=71.52 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=53.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccC--Chh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKM--DIR 468 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~--~~~ 468 (794)
|++|+|+||||||.|+.+++..+-..-+. ....+...|...+......+.. +.-.-.+.+--+|+||||... +..
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~-v~f~~~~~L~~~l~~~~~~~~~--~~~~~~l~~~dlLilDDlG~~~~~~~ 125 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYS-VLFITASDLLDELKQSRSDGSY--EELLKRLKRVDLLILDDLGYEPLSEW 125 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEHHHHHHHHHCCHCCTTH--CHHHHHHHTSSCEEEETCTSS---HH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcc-eeEeecCceeccccccccccch--hhhcCccccccEecccccceeeeccc
Confidence 89999999999999999998753221000 0011222233222211111111 000112335579999999854 455
Q ss_pred hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 469 DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 469 ~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
....|+++++... . +-+.|-|+|..+
T Consensus 126 ~~~~l~~ii~~R~------------~-~~~tIiTSN~~~ 151 (178)
T PF01695_consen 126 EAELLFEIIDERY------------E-RKPTIITSNLSP 151 (178)
T ss_dssp HHHCTHHHHHHHH------------H-T-EEEEEESS-H
T ss_pred ccccchhhhhHhh------------c-ccCeEeeCCCch
Confidence 5667788775542 2 124556888543
No 247
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.64 E-value=0.0006 Score=75.30 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=54.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEeccccc--CChh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDK--MDIR 468 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk--~~~~ 468 (794)
+++|+|+||||||+|+.++++.+-..-+.. ...+...+...+...........+...-.+.+--+|+||++.. .++.
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V-~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~ 263 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSV-IYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEF 263 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeE-EEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHH
Confidence 799999999999999999998753211100 0012222222111100000000000001122346899999964 4566
Q ss_pred hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCC
Q 003809 469 DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANP 505 (794)
Q Consensus 469 ~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP 505 (794)
.+..|++.++... ..+-.+|.|+|-
T Consensus 264 ~~~~Lf~iin~R~------------~~~k~tIiTSNl 288 (329)
T PRK06835 264 SKSELFNLINKRL------------LRQKKMIISTNL 288 (329)
T ss_pred HHHHHHHHHHHHH------------HCCCCEEEECCC
Confidence 6778888876542 123456777783
No 248
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.62 E-value=0.028 Score=58.67 Aligned_cols=116 Identities=20% Similarity=0.156 Sum_probs=69.6
Q ss_pred ceechhhHHHHHH---HHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC----cceeecCCccCcccc
Q 003809 357 TVFGHQDIKRAIL---LMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP----RSVYTSGKSSSAAGL 429 (794)
Q Consensus 357 ~I~G~e~vK~all---l~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p----~~~~~~g~~ss~~gL 429 (794)
.+.|.+..|.+++ .+.+.|.+-+ ||||.|..|||||.|+|++..... +.+-+.-. .-..|
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pAN-----------nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~--dl~~L 127 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPAN-----------NVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE--DLATL 127 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCccc-----------ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH--HHhhH
Confidence 4778888888885 4556665432 999999999999999999987632 21111000 00000
Q ss_pred ccccccCCCCcccccccCceeecCCCeEEeccccc-CChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 430 TASVAKEPETGEFCIEAGALMLADNGICCIDEFDK-MDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 430 t~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk-~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
.. ++ +. ++. ....-|+|+|++.- -....-.+|-.+||-+ ...-|.++.|-||+|..
T Consensus 128 p~-l~-----~~--Lr~----~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~---------ve~rP~NVl~YATSNRR 184 (287)
T COG2607 128 PD-LV-----EL--LRA----RPEKFILFCDDLSFEEGDDAYKALKSALEGG---------VEGRPANVLFYATSNRR 184 (287)
T ss_pred HH-HH-----HH--Hhc----CCceEEEEecCCCCCCCchHHHHHHHHhcCC---------cccCCCeEEEEEecCCc
Confidence 00 00 00 000 11234899999862 2333455666777533 33457889999999965
No 249
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.014 Score=70.50 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=31.4
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+-| +.|.+.-..-++--|.-.. |+ |-+|+|+||+|||.++.-++...
T Consensus 169 lDP-vIGRd~EI~r~iqIL~RR~-KN-----------NPvLiGEpGVGKTAIvEGLA~rI 215 (786)
T COG0542 169 LDP-VIGRDEEIRRTIQILSRRT-KN-----------NPVLVGEPGVGKTAIVEGLAQRI 215 (786)
T ss_pred CCC-CcChHHHHHHHHHHHhccC-CC-----------CCeEecCCCCCHHHHHHHHHHHH
Confidence 445 5666554444443344333 21 77999999999999999888764
No 250
>PHA02774 E1; Provisional
Probab=96.56 E-value=0.014 Score=68.23 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=58.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC-hhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD-IRD 469 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~-~~~ 469 (794)
+++|+||||||||+|+-++.+++...+..--. + ...|-+.+ +++.-+++|||+-.-. .-.
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~fvN-~--------------~s~FwLqp----l~d~ki~vlDD~t~~~w~y~ 496 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN-S--------------KSHFWLQP----LADAKIALLDDATHPCWDYI 496 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE-C--------------ccccccch----hccCCEEEEecCcchHHHHH
Confidence 79999999999999999999987532221000 0 12232332 4456699999993221 122
Q ss_pred HHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 470 QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 470 ~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
...|..+++...+++.+.-..-.--...-+|.|+|...
T Consensus 497 d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~ 534 (613)
T PHA02774 497 DTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDV 534 (613)
T ss_pred HHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCc
Confidence 33578888877777763322111111245677888553
No 251
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.53 E-value=0.0013 Score=69.55 Aligned_cols=97 Identities=13% Similarity=0.206 Sum_probs=53.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccccc---CCC-CcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAK---EPE-TGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~---d~~-~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
+++|.|+||||||+|+.+++..+...-... ...+...+...+.. +.. +.+..+.. +..--+++|||++...
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v-~~it~~~l~~~l~~~~~~~~~~~~~~l~~----l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSV-LIITVADIMSAMKDTFSNSETSEEQLLND----LSNVDLLVIDEIGVQT 175 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeE-EEEEHHHHHHHHHHHHhhccccHHHHHHH----hccCCEEEEeCCCCCC
Confidence 799999999999999999998763310000 00012222221110 000 00111111 2345699999999765
Q ss_pred hh--hHHHHHHHhhccEEEEeecceEEeecCceEEEEecC
Q 003809 467 IR--DQVAIHEAMEQQTISITKAGIQATLNARTSILAAAN 504 (794)
Q Consensus 467 ~~--~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaN 504 (794)
.. ....|+++++.+. ..+..+|-++|
T Consensus 176 ~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSN 203 (244)
T PRK07952 176 ESRYEKVIINQIVDRRS------------SSKRPTGMLTN 203 (244)
T ss_pred CCHHHHHHHHHHHHHHH------------hCCCCEEEeCC
Confidence 44 3446777775432 22455667777
No 252
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.49 E-value=0.0033 Score=62.80 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
|++|.|+||+|||++++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 78999999999999999888876
No 253
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.49 E-value=0.0032 Score=69.37 Aligned_cols=60 Identities=22% Similarity=0.175 Sum_probs=51.3
Q ss_pred cCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 446 AGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 446 ~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.|.+..|++|++=+-|+-|.+.+....||.+.++|.+... +.....+.+..|||.+|+..
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E 285 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEE 285 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHH
Confidence 5889999999988889999999999999999999998764 33445678899999999874
No 254
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.44 E-value=0.042 Score=58.80 Aligned_cols=171 Identities=19% Similarity=0.185 Sum_probs=109.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
-.|+.|++|-=|+..=..+-.- +....+.|...+.| ||+||||.+.++-+--
T Consensus 254 lALFsGdTGEIr~EvRdqin~K--------------------V~eWreEGKAeivp--------GVLFIDEvHMLDIEcF 305 (454)
T KOG2680|consen 254 LALFSGDTGEIRSEVRDQINTK--------------------VAEWREEGKAEIVP--------GVLFIDEVHMLDIECF 305 (454)
T ss_pred EEEEeCCcccccHHHHHHHHHH--------------------HHHHHhcCCeeecc--------ceEEEeeehhhhhHHH
Confidence 3689999998888765444331 10001122222333 8999999999999998
Q ss_pred HHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC-----CCCCCCCcc--Ccccc---cCccccHHHHHHHHHHHh
Q 003809 471 VAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG-----RYDKSKPLK--KHEDA---LAPAFTTAQLKRYIAYAK 540 (794)
Q Consensus 471 ~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G-----ryd~~~~l~--~~~~~---~~~~~~~~~lr~yi~~ar 540 (794)
+.|..|+|+-.. ..++.|+|.--. .|.....++ ..|.. -..+++.+++++.+..-.
T Consensus 306 sFlNrAlE~d~~--------------PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~iRc 371 (454)
T KOG2680|consen 306 SFLNRALENDMA--------------PIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILRIRC 371 (454)
T ss_pred HHHHHHhhhccC--------------cEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHHhhh
Confidence 999999986542 234445554321 121111111 11111 123577788877665322
Q ss_pred -ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhccc
Q 003809 541 -TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVIS 618 (794)
Q Consensus 541 -~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~~ 618 (794)
.-...++++|.+.|... ....+.|-...||..|.-.|.-+-...|+.+|++.|++||-+.-.+
T Consensus 372 ~EEdv~m~~~A~d~Lt~i---------------~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~Rs 435 (454)
T KOG2680|consen 372 QEEDVEMNPDALDLLTKI---------------GEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKRS 435 (454)
T ss_pred hhhccccCHHHHHHHHHh---------------hhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhhh
Confidence 24567888998888652 1224568888899999888988889999999999999999776554
No 255
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.0048 Score=63.72 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=24.4
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
|.+|.||+||||+|||+++|-++..+.-
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 4569999999999999999999998543
No 256
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.30 E-value=0.00069 Score=63.71 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+++++|+||+|||.+++.+++..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999875
No 257
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=96.21 E-value=0.0074 Score=65.11 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=50.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCC-----cccccccC-ceeec--CCCeEEeccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPET-----GEFCIEAG-ALMLA--DNGICCIDEF 462 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~-----g~~~~~~G-al~la--d~GIl~IDE~ 462 (794)
|+|++||||||||....+++..+.... +..+....|.++-.++... ..|....+ .+... .--.+++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~---~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPH---PTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCC---CchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecch
Confidence 999999999999999988888765531 1111111222211111100 00000000 01111 1236899999
Q ss_pred ccCChhhHHHHHHHhhccE
Q 003809 463 DKMDIRDQVAIHEAMEQQT 481 (794)
Q Consensus 463 dk~~~~~~~~L~eame~~~ 481 (794)
|.|....|++|.+.+|+-+
T Consensus 141 DaMT~~AQnALRRviek~t 159 (360)
T KOG0990|consen 141 DAMTRDAQNALRRVIEKYT 159 (360)
T ss_pred hHhhHHHHHHHHHHHHHhc
Confidence 9999999999998776544
No 258
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.18 E-value=0.0036 Score=66.95 Aligned_cols=124 Identities=14% Similarity=0.149 Sum_probs=78.6
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCc
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSA 426 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~ 426 (794)
|+-|-..+.-.++||..+|.-++-++-+-.... +-+-.+-+=|.|.|||||+..++.+++.+- ..|..|.-
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~-----~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~----~~Gl~S~~ 143 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANP-----NPRKPLVLSFHGWTGTGKNYVAEIIAENLY----RGGLRSPF 143 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC-----CCCCCeEEEecCCCCCchhHHHHHHHHHHH----hccccchh
Confidence 455677778889999999998888876644211 123345677899999999999999998643 22322222
Q ss_pred cccccccccCCCCc---cccc-----ccCceeecCCCeEEecccccCChhhHHHHHHHhhc
Q 003809 427 AGLTASVAKEPETG---EFCI-----EAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 427 ~gLt~~v~~d~~~g---~~~~-----~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
.-...+...=|... .+.. -.|.+...+..+.++||.|||++.....|...++.
T Consensus 144 V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 144 VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred HHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcc
Confidence 11111100000000 0000 12334455678999999999999999999999873
No 259
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.03 E-value=0.018 Score=67.94 Aligned_cols=83 Identities=22% Similarity=0.173 Sum_probs=49.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecC--CCeEEecccccCChh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLAD--NGICCIDEFDKMDIR 468 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad--~GIl~IDE~dk~~~~ 468 (794)
=+||+||||.|||+||+.+|+.++-++..... | -.-++..++..-.+. +..-...-|+ .-.++|||||-.++.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINA--S-DeRt~~~v~~kI~~a--vq~~s~l~adsrP~CLViDEIDGa~~~ 402 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA--S-DERTAPMVKEKIENA--VQNHSVLDADSRPVCLVIDEIDGAPRA 402 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEecc--c-ccccHHHHHHHHHHH--HhhccccccCCCcceEEEecccCCcHH
Confidence 37899999999999999999988776654211 1 111222222110000 0111111122 246789999998877
Q ss_pred hHHHHHHHhh
Q 003809 469 DQVAIHEAME 478 (794)
Q Consensus 469 ~~~~L~eame 478 (794)
....|+..++
T Consensus 403 ~Vdvilslv~ 412 (877)
T KOG1969|consen 403 AVDVILSLVK 412 (877)
T ss_pred HHHHHHHHHH
Confidence 7777777775
No 260
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.93 E-value=0.0078 Score=57.01 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
...|-.++.-.+|||..++..++-++-+-.... .-+-.+-+-|.|+||||||.+++.|++.
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 345667777789999999988877775443211 1233346679999999999999999985
No 261
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.74 E-value=0.09 Score=62.15 Aligned_cols=236 Identities=18% Similarity=0.143 Sum_probs=127.2
Q ss_pred hhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhh---------CCcceee--
Q 003809 351 VDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGI---------VPRSVYT-- 419 (794)
Q Consensus 351 ~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~---------~p~~~~~-- 419 (794)
+..+--.+.+.+..+.-|-..+-+-... ...| . =+.+.|-||||||+.+..+.+. +|.-.|.
T Consensus 391 ls~vp~sLpcRe~E~~~I~~f~~~~i~~-~~~g-----~-~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveI 463 (767)
T KOG1514|consen 391 LSAVPESLPCRENEFSEIEDFLRSFISD-QGLG-----S-CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEI 463 (767)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCC-CCCc-----e-eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEE
Confidence 3344345666777777666665444321 0111 1 4889999999999999988874 3443442
Q ss_pred cCCccCcc-----ccccccccCCCCccccccc---C---ceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecc
Q 003809 420 SGKSSSAA-----GLTASVAKEPETGEFCIEA---G---ALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAG 488 (794)
Q Consensus 420 ~g~~ss~~-----gLt~~v~~d~~~g~~~~~~---G---al~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG 488 (794)
.|..-... .+-..+.....+....+++ - .-......|++|||+|.|-...|..|+...+
T Consensus 464 Ngm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd---------- 533 (767)
T KOG1514|consen 464 NGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD---------- 533 (767)
T ss_pred cceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc----------
Confidence 11100000 0000000000000000000 0 0011234589999999887766766666652
Q ss_pred eEEeecCceEEEEecCCCC--CC-CCCCCCcc-CcccccCccccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccC
Q 003809 489 IQATLNARTSILAAANPAG--GR-YDKSKPLK-KHEDALAPAFTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRG 564 (794)
Q Consensus 489 ~~~~l~ar~siiAaaNP~~--Gr-yd~~~~l~-~~~~~~~~~~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~ 564 (794)
-.+.-+++..|||-+|... -| +....+.+ ......-.+++...|+..|.-.-.-.-.|...|.++... .+.
T Consensus 534 Wpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvar-kVA---- 608 (767)
T KOG1514|consen 534 WPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVAR-KVA---- 608 (767)
T ss_pred CCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHH-HHH----
Confidence 1123367889999888652 00 00000000 011222346788888888764332223456666666654 222
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHHHHhcCC-------CCcCHHHHHHHHHHHhhhc
Q 003809 565 DTTPGSRVAYRMTVRQLEALIRLSEAIARSHLE-------TQVHPRHVRVAVRLLKTSV 616 (794)
Q Consensus 565 ~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~-------~~V~~~dv~eAi~L~~~s~ 616 (794)
......|....++|-|.-+|.-+.. ..|+..||.+|++=+..+.
T Consensus 609 --------avSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 609 --------AVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred --------hccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhh
Confidence 1234568888888888777766655 7899999999998776654
No 262
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.11 Score=57.60 Aligned_cols=204 Identities=16% Similarity=0.214 Sum_probs=117.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccC---
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKM--- 465 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~--- 465 (794)
+.|+|=.||.+||||.+-+-+ +|.....+|...+.+.|+-... +..+|.+-+- .++..||+..+
T Consensus 225 NyN~cElGPr~TGKshvYkev---Spn~~liSGGqttvAnLFYNma--------trqiGlvg~w--DvVaFDEVagirFk 291 (683)
T COG4930 225 NYNMCELGPRQTGKSHVYKEV---SPNVRLISGGQTTVANLFYNMA--------TRQIGLVGLW--DVVAFDEVAGIRFK 291 (683)
T ss_pred CcchhhcCCCccCccceehcc---CCceEEeeCCcccHHHHHHHHh--------hccccceeee--eeeeehhhcccccc
Confidence 459999999999999886543 5666667777777766654221 1234444332 37889998854
Q ss_pred ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCcccccCccccHHHHHHHHHHHhc-cCC
Q 003809 466 DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHEDALAPAFTTAQLKRYIAYAKT-LKP 544 (794)
Q Consensus 466 ~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~ar~-~~P 544 (794)
+++-...|...|++|...-.+ ....-++...+++-.|..-.-|-+...+. ....++-.+..++-++-.|.-- --|
T Consensus 292 dkDg~qilKDYMaSGsf~RG~--~~v~~~ASlVFvGNvnqs~E~lvktshL~--~pfPeaM~DtAFfDR~H~yiPGWEiP 367 (683)
T COG4930 292 DKDGMQILKDYMASGSFERGD--KKVVSDASLVFVGNVNQSSEGLVKTSHLT--YPFPEAMRDTAFFDRIHGYIPGWEIP 367 (683)
T ss_pred CccHHHHHHHHHhcCCccccc--ccccccceEEEEecccccccceeehhhcc--ccCchhhhhhHHHHHHhccCccccCc
Confidence 333455788899999876542 23333444555555553321121111111 0000111233344444333321 124
Q ss_pred cCCHH--------HHHHHHHHHHHhccCCCCCC----CccccccCHHHHHHHHHHHHHHHHh-cCCCCcCHHHHHHHH
Q 003809 545 KLSLE--------ARKLLVDSYVALRRGDTTPG----SRVAYRMTVRQLEALIRLSEAIARS-HLETQVHPRHVRVAV 609 (794)
Q Consensus 545 ~ls~e--------a~~~L~~~Y~~lR~~~~~~~----~~~~~~iT~R~LesliRlseA~Arl-~~~~~V~~~dv~eAi 609 (794)
++.++ +.+++.+++.+||+...+.. -+-+-.+..|+..++-|..-.+-+| .-....+.++++..+
T Consensus 368 K~rpehft~rYG~isDY~AE~~reMRKrS~sd~i~rf~kLgnNlnqRDviavkrt~SGLlKLL~Pd~t~~kee~k~il 445 (683)
T COG4930 368 KIRPEHFTKRYGVISDYFAEALREMRKRSLSDLIGRFVKLGNNLNQRDVIAVKRTTSGLLKLLFPDKTFDKEELKTIL 445 (683)
T ss_pred cCCHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 44433 56688888888988754321 1123457789999999977665555 456789999988744
No 263
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.02 Score=63.45 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCCeEEecccccCChhhHHHHHHHhhc
Q 003809 453 DNGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 453 d~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
..-|++||+.++|+....++|+..||+
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEE 132 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEE 132 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhC
Confidence 345899999999999999999999986
No 264
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.40 E-value=0.012 Score=60.24 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=45.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc---ceeecCCcc-Ccc------ccccccccCCCCc-ccccccCceeecCCCeEEe
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR---SVYTSGKSS-SAA------GLTASVAKEPETG-EFCIEAGALMLADNGICCI 459 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~---~~~~~g~~s-s~~------gLt~~v~~d~~~g-~~~~~~Gal~lad~GIl~I 459 (794)
-.++.|+||||||++++.+...+.. .+....... ... |..+..+...... ......+...+...-+++|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 3677899999999999988766432 222111100 000 1111000000000 0000000011344569999
Q ss_pred cccccCChhhHHHHHHHhhc
Q 003809 460 DEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 460 DE~dk~~~~~~~~L~eame~ 479 (794)
||...++......|+..+..
T Consensus 100 DEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 100 DEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp SSGGG-BHHHHHHHHHHS-T
T ss_pred ecccccCHHHHHHHHHHHHh
Confidence 99999999988888888754
No 265
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.36 E-value=0.036 Score=57.56 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=41.5
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceee---cCCCeEEecccccCChh
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALML---ADNGICCIDEFDKMDIR 468 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~l---ad~GIl~IDE~dk~~~~ 468 (794)
+++.|.||+|||++++.+.... .+.+... .+....+....+......+.+....... .....++|||+..+++.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g 77 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR--LVVTVIS-PTIELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPG 77 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc--ccccccc-ccceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChH
Confidence 4789999999999999988873 1111000 0000111111111111112222211111 23569999999999986
Q ss_pred hHHHHHH
Q 003809 469 DQVAIHE 475 (794)
Q Consensus 469 ~~~~L~e 475 (794)
....|..
T Consensus 78 ~l~~l~~ 84 (234)
T PF01443_consen 78 YLLLLLS 84 (234)
T ss_pred HHHHHHh
Confidence 6554333
No 266
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.25 E-value=0.045 Score=65.21 Aligned_cols=46 Identities=20% Similarity=0.142 Sum_probs=32.2
Q ss_pred hhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 352 DSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 352 ~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.++|.....+.-|.|+..++-+. -.+|.|+||||||+++..+...
T Consensus 138 ~~~~~~~~~~~~Qk~A~~~al~~~---------------~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 138 ENLFPLLNEQNWQKVAVALALKSN---------------FSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred HHhhccccccHHHHHHHHHHhhCC---------------eEEEEcCCCCCHHHHHHHHHHH
Confidence 344444333355677888777765 4799999999999988776554
No 267
>PRK14532 adenylate kinase; Provisional
Probab=95.21 E-value=0.018 Score=58.10 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=25.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
||+|+|+||+|||++++.+++..+.....+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 799999999999999999999877655544
No 268
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.20 E-value=0.015 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.9
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
|+++|+||+|||++++.+++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 689999999999999999987773
No 269
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.18 E-value=0.011 Score=54.75 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=23.0
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
|+|+|+||+|||++++.+++.+.-.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVI 28 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 789999999999999999997654433
No 270
>PRK10536 hypothetical protein; Provisional
Probab=95.14 E-value=0.078 Score=56.45 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=21.3
Q ss_pred CCCeEEecccccCChhhHHHHHHHh
Q 003809 453 DNGICCIDEFDKMDIRDQVAIHEAM 477 (794)
Q Consensus 453 d~GIl~IDE~dk~~~~~~~~L~eam 477 (794)
++++++|||...+++.....++..+
T Consensus 176 ~~~~vIvDEaqn~~~~~~k~~ltR~ 200 (262)
T PRK10536 176 ENAVVILDEAQNVTAAQMKMFLTRL 200 (262)
T ss_pred cCCEEEEechhcCCHHHHHHHHhhc
Confidence 4689999999999998877777665
No 271
>PF13173 AAA_14: AAA domain
Probab=95.11 E-value=0.029 Score=53.13 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=44.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC---cceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP---RSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p---~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~ 467 (794)
-++|.|+.|+|||++++.+++... ..+|..........+ .+...-++..+. ......++||||++.++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL-----ADPDLLEYFLEL---IKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH-----hhhhhHHHHHHh---hccCCcEEEEehhhhhcc
Confidence 589999999999999988886543 233332111110000 000000010110 011457899999999973
Q ss_pred hhHHHHHHHhhcc
Q 003809 468 RDQVAIHEAMEQQ 480 (794)
Q Consensus 468 ~~~~~L~eame~~ 480 (794)
-...+....+.+
T Consensus 76 -~~~~lk~l~d~~ 87 (128)
T PF13173_consen 76 -WEDALKFLVDNG 87 (128)
T ss_pred -HHHHHHHHHHhc
Confidence 455566665544
No 272
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.02 E-value=0.016 Score=64.76 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=49.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC------CcceeecCCccCccccccccccCC---CCcccccccCce---------eec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV------PRSVYTSGKSSSAAGLTASVAKEP---ETGEFCIEAGAL---------MLA 452 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~------p~~~~~~g~~ss~~gLt~~v~~d~---~~g~~~~~~Gal---------~la 452 (794)
-+++.|.||||||.||-.+++.+ ....+.++......-+-..+.+.. ........+..+ ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 47899999999999998888876 223333333221111111111110 000011111111 123
Q ss_pred CCCeEEecccccCChh--------hHHHHHHHhhccEE
Q 003809 453 DNGICCIDEFDKMDIR--------DQVAIHEAMEQQTI 482 (794)
Q Consensus 453 d~GIl~IDE~dk~~~~--------~~~~L~eame~~~i 482 (794)
+-.++++||.+++... ....|.+.|....+
T Consensus 83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv 120 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKV 120 (352)
T ss_pred cCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCE
Confidence 4579999999998872 24567777765443
No 273
>PRK04296 thymidine kinase; Provisional
Probab=95.01 E-value=0.046 Score=55.67 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=19.4
Q ss_pred CeEEecccccCChhhHHHHHHHhhccE
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQQT 481 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~~~ 481 (794)
.+++|||+..++.+....|.+.+.+..
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~~~g 106 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLDDLG 106 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHHcC
Confidence 589999999998775555666654333
No 274
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.97 E-value=0.025 Score=62.75 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=36.4
Q ss_pred CCceechhhHHHHH--HHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc
Q 003809 355 GPTVFGHQDIKRAI--LLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS 416 (794)
Q Consensus 355 ~p~I~G~e~vK~al--ll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~ 416 (794)
+-.++||..+++|. ++.|+.... +-| -.+||.||||||||.|+-++++.+...
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K--------~aG-r~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGK--------IAG-RAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT----------TT--EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccccChHHHHHHHHHHHHHHhccc--------ccC-cEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 34789999998865 444543221 111 169999999999999999999997754
No 275
>PRK13947 shikimate kinase; Provisional
Probab=94.96 E-value=0.023 Score=56.19 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=27.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSG 421 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g 421 (794)
||+|+|+||+|||++++.+++.++..++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 7999999999999999999999887776543
No 276
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.02 Score=57.73 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=27.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK 422 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~ 422 (794)
+|+|+|+||+|||++++.+++.++.....+|.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhH
Confidence 68999999999999999999997766655433
No 277
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.91 E-value=0.042 Score=60.77 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=25.2
Q ss_pred CCCeEEecccccCChhhHHHHHHHhhcc
Q 003809 453 DNGICCIDEFDKMDIRDQVAIHEAMEQQ 480 (794)
Q Consensus 453 d~GIl~IDE~dk~~~~~~~~L~eame~~ 480 (794)
...|++||+++.|++..+++|+..||+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep 140 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEP 140 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhC
Confidence 4569999999999999999999999875
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.054 Score=53.37 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.1
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|.+.|+||+|||+++..++..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 358999999999999999999976544
No 279
>PRK08118 topology modulation protein; Reviewed
Probab=94.82 E-value=0.025 Score=56.45 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=25.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+++|+||+|||+|++.+++.+...++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~ 31 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHH 31 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcee
Confidence 58999999999999999999987665543
No 280
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=94.79 E-value=0.19 Score=56.10 Aligned_cols=95 Identities=22% Similarity=0.248 Sum_probs=58.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
=++|+|||+||||++.-.+.+++...+..-.. ....|-+.| |++.-|.+||+.-.-.=.-.
T Consensus 264 Clvi~GPPdTGKS~F~~SLi~Fl~GkViSf~N---------------s~ShFWLqP----L~d~Ki~llDDAT~~cW~Y~ 324 (432)
T PF00519_consen 264 CLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN---------------SKSHFWLQP----LADAKIALLDDATYPCWDYI 324 (432)
T ss_dssp EEEEESSCCCSHHHHHHHHHHHHTSEEE-GGG---------------TTSCGGGGG----GCT-SSEEEEEE-HHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHHHHhCCEEEEecC---------------CCCcccccc----hhcCcEEEEcCCcccHHHHH
Confidence 58999999999999999999987655443111 123344544 56777899999864332222
Q ss_pred -HHHHHHhhccEEEEe---ecceEEeecCceEEEEecCCCC
Q 003809 471 -VAIHEAMEQQTISIT---KAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 471 -~~L~eame~~~isi~---kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.-|..+++-..|++. ||-+....| -+|-|+|-..
T Consensus 325 D~ylRNaLDGN~vsiD~KHkap~Qik~P---PLlITsN~dv 362 (432)
T PF00519_consen 325 DTYLRNALDGNPVSIDCKHKAPVQIKCP---PLLITSNIDV 362 (432)
T ss_dssp HHHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-T
T ss_pred HHHHHhccCCCeeeeeccCCCceEeecC---ceEEecCCCC
Confidence 346788888888886 333444433 3556777543
No 281
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.75 E-value=0.034 Score=68.16 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=48.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc---ceeecCCccCccccccccccCCCCc-------cc--ccccCceeecCCCeEE
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR---SVYTSGKSSSAAGLTASVAKEPETG-------EF--CIEAGALMLADNGICC 458 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~---~~~~~g~~ss~~gLt~~v~~d~~~g-------~~--~~~~Gal~lad~GIl~ 458 (794)
-++|.|+||||||++++.+...+.. .+... .+.|..+....+ .+| .| .+..+.-.+...-+++
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~----ApTg~Aa~~L~~-~~g~~a~Ti~~~~~~~~~~~~~~~~~~llI 444 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGA----ALSGKAAEGLQA-ESGIESRTLASLEYAWANGRDLLSDKDVLV 444 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE----eCcHHHHHHHHh-ccCCceeeHHHHHhhhccCcccCCCCcEEE
Confidence 4789999999999999999866432 12211 111111111110 000 01 0122223345677999
Q ss_pred ecccccCChhhHHHHHHHhh
Q 003809 459 IDEFDKMDIRDQVAIHEAME 478 (794)
Q Consensus 459 IDE~dk~~~~~~~~L~eame 478 (794)
|||+.+++......|+....
T Consensus 445 vDEasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 445 IDEAGMVGSRQMARVLKEAE 464 (744)
T ss_pred EECcccCCHHHHHHHHHHHH
Confidence 99999999988888777543
No 282
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.70 E-value=0.11 Score=60.97 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
-+||.||||||||+.++.+++.+...+..
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 48899999999999999999997665543
No 283
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.67 E-value=0.033 Score=58.49 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=26.9
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
+..+|+|+|+||+|||++++.+++.........
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 345799999999999999999999876555543
No 284
>PHA00729 NTP-binding motif containing protein
Probab=94.65 E-value=0.025 Score=59.06 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
|++|.|+||||||+|+..++..+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998653
No 285
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.62 E-value=0.029 Score=54.18 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=25.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|+||+|||++++.+++.++...+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~ 29 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD 29 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999887665553
No 286
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.60 E-value=0.077 Score=63.47 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 361 HQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 361 ~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.-|.|+.+++..+. .+|.|+||||||++++.+...
T Consensus 154 ~d~Qk~Av~~a~~~~~---------------~vItGgpGTGKTt~v~~ll~~ 190 (615)
T PRK10875 154 VDWQKVAAAVALTRRI---------------SVISGGPGTGKTTTVAKLLAA 190 (615)
T ss_pred CHHHHHHHHHHhcCCe---------------EEEEeCCCCCHHHHHHHHHHH
Confidence 3667889888887654 799999999999998776654
No 287
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.59 E-value=0.35 Score=52.60 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=36.8
Q ss_pred cCCceechhhHHHHH--HHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 354 IGPTVFGHQDIKRAI--LLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 354 i~p~I~G~e~vK~al--ll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-.|--+|+..++.++ |-.|+...++... -|+||+||+|.|||++++.....-|.
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rm--------p~lLivG~snnGKT~Ii~rF~~~hp~ 87 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRM--------PNLLIVGDSNNGKTMIIERFRRLHPP 87 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCC--------CceEEecCCCCcHHHHHHHHHHHCCC
Confidence 356667777777765 3334443222111 17999999999999999999887665
No 288
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.54 E-value=0.033 Score=54.88 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|+||+|||++++.+++.++..++.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999999988765554
No 289
>PRK03839 putative kinase; Provisional
Probab=94.48 E-value=0.033 Score=55.77 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=25.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
.|+|+|.||+|||++++.+++.+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 589999999999999999999887665543
No 290
>PRK14530 adenylate kinase; Provisional
Probab=94.47 E-value=0.034 Score=57.56 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=24.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|+||+|||++++.+++.++.....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 79999999999999999999987654443
No 291
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.46 E-value=0.03 Score=55.61 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=18.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+++|+|+||+|||+|++.+...+.
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999998877643
No 292
>PRK07261 topology modulation protein; Provisional
Probab=94.35 E-value=0.042 Score=54.98 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
.|+++|+||+|||+|++.++..+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~ 28 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPV 28 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 589999999999999999988754433
No 293
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.31 E-value=0.04 Score=55.11 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=23.1
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
|+++|+||+|||++++.+++..+-...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i 28 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL 28 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 689999999999999999998764443
No 294
>PRK00625 shikimate kinase; Provisional
Probab=94.27 E-value=0.039 Score=55.42 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=25.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
||+|+|.||+|||++++.+++.+...++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999999987766654
No 295
>PRK13949 shikimate kinase; Provisional
Probab=94.10 E-value=0.048 Score=54.49 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=25.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|+||+|||++++.+++.+...++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 69999999999999999999988655543
No 296
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.08 E-value=0.17 Score=55.80 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=23.4
Q ss_pred CeEEecccccCChhhHHHHHHHhhc
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
-|++||+.++|+....++|+..||+
T Consensus 115 kV~iI~~ae~m~~~AaNaLLKtLEE 139 (319)
T PRK08769 115 QVVIVDPADAINRAACNALLKTLEE 139 (319)
T ss_pred EEEEeccHhhhCHHHHHHHHHHhhC
Confidence 4999999999999999999999985
No 297
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.06 E-value=0.098 Score=58.80 Aligned_cols=88 Identities=22% Similarity=0.188 Sum_probs=49.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCcc-----ccccc-cccCCCC-cc---cccc---cCceeecCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAA-----GLTAS-VAKEPET-GE---FCIE---AGALMLADN 454 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~-----gLt~~-v~~d~~~-g~---~~~~---~Gal~lad~ 454 (794)
++.+.|+.|||||.+++++...+... +..++....++ |.|.. ..+-+.. .. ..+. .-.-.+.+-
T Consensus 24 ~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (364)
T PF05970_consen 24 NFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRKA 103 (364)
T ss_pred EEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhhh
Confidence 89999999999999999998876442 33222211111 22211 0000000 00 0000 011123344
Q ss_pred CeEEecccccCChhhHHHHHHHhh
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAME 478 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame 478 (794)
.+++|||+..++.....++...|.
T Consensus 104 ~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 104 DVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred eeeecccccchhHHHHHHHHHhhh
Confidence 689999999999887777766654
No 298
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.01 E-value=0.042 Score=53.38 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=26.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
-|||+.|-||||||+++..++..+....+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 4899999999999999999998776555443
No 299
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.93 E-value=0.052 Score=54.64 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=23.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
+|+|+|+||+|||++++.+++......+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4899999999999999999997654443
No 300
>PRK14531 adenylate kinase; Provisional
Probab=93.91 E-value=0.053 Score=54.66 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=24.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+++|+||+|||++++.+++......+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 68999999999999999999987654443
No 301
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.85 E-value=0.12 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-++++||+|+|||++++++....+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999998887765
No 302
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.76 E-value=0.3 Score=55.54 Aligned_cols=136 Identities=20% Similarity=0.306 Sum_probs=70.1
Q ss_pred hhhhcCC-ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc---c---eee-cC
Q 003809 350 IVDSIGP-TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR---S---VYT-SG 421 (794)
Q Consensus 350 l~~si~p-~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~---~---~~~-~g 421 (794)
|.++-.| .+.|.+.-..-+-..+.+.-.. ...| .+.+.|-||||||.++..+..-++. + +|. +.
T Consensus 143 l~~t~~p~~l~gRe~e~~~v~~F~~~hle~-~t~g-------SlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~ 214 (529)
T KOG2227|consen 143 LLNTAPPGTLKGRELEMDIVREFFSLHLEL-NTSG-------SLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT 214 (529)
T ss_pred HHhcCCCCCccchHHHHHHHHHHHHhhhhc-ccCc-------ceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec
Confidence 4444444 5677665544433332222111 1223 6899999999999999877665332 1 332 11
Q ss_pred CccCccc----cccccccCC---CCcc-----c--ccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeec
Q 003809 422 KSSSAAG----LTASVAKEP---ETGE-----F--CIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKA 487 (794)
Q Consensus 422 ~~ss~~g----Lt~~v~~d~---~~g~-----~--~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~ka 487 (794)
....+.. +...+.++. .++. + .......+ =++++||+|.+....+..|+++.|
T Consensus 215 sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~----~llVlDEmD~L~tr~~~vLy~lFe--------- 281 (529)
T KOG2227|consen 215 SLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFM----LLLVLDEMDHLITRSQTVLYTLFE--------- 281 (529)
T ss_pred cccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccce----EEEEechhhHHhhcccceeeeehh---------
Confidence 1111111 112222221 1110 0 00011112 278999999988776666665542
Q ss_pred ceEEeecCceEEEEecCCCC
Q 003809 488 GIQATLNARTSILAAANPAG 507 (794)
Q Consensus 488 G~~~~l~ar~siiAaaNP~~ 507 (794)
-....+.|+.+++-||-..
T Consensus 282 -wp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 282 -WPKLPNSRIILIGIANSLD 300 (529)
T ss_pred -cccCCcceeeeeeehhhhh
Confidence 1223467899999999653
No 303
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.76 E-value=0.099 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+++++|++|+|||++++++..+.|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC
Confidence 7999999999999999999987653
No 304
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.76 E-value=0.077 Score=58.89 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=23.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
|||++|++|+|||++++++....|.
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC
Confidence 8999999999999999999998875
No 305
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.76 E-value=0.13 Score=62.96 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=47.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc-----ceee---cCCccC----ccccccccccCCCCcccccccCce------eec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR-----SVYT---SGKSSS----AAGLTASVAKEPETGEFCIEAGAL------MLA 452 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~-----~~~~---~g~~ss----~~gLt~~v~~d~~~g~~~~~~Gal------~la 452 (794)
.++|.|+||||||++++.+...+.. .+.. +|+... ..|..+..+... ....++.. ...
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~l----L~~~~~~~~~~~~~~~~ 415 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRL----LGYGPDTFRHNHLEDPI 415 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHH----hhccCCccchhhhhccc
Confidence 5899999999999999998776532 2222 111000 001111000000 00001100 012
Q ss_pred CCCeEEecccccCChhhHHHHHHHhhc
Q 003809 453 DNGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 453 d~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
...+++|||...++......|+.++..
T Consensus 416 ~~~llIvDEaSMvd~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 416 DCDLLIVDESSMMDTWLALSLLAALPD 442 (720)
T ss_pred cCCEEEEeccccCCHHHHHHHHHhCCC
Confidence 457999999999999888888887643
No 306
>PRK06217 hypothetical protein; Validated
Probab=93.70 E-value=0.067 Score=53.90 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=25.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|.||+|||++++.+++.+...++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~ 31 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLD 31 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEE
Confidence 69999999999999999999988765554
No 307
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=93.69 E-value=0.092 Score=68.65 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=99.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC-cceee-cCCccCccccccccccCC----CCcccccccCceeecCCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP-RSVYT-SGKSSSAAGLTASVAKEP----ETGEFCIEAGALMLADNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p-~~~~~-~g~~ss~~gLt~~v~~d~----~~g~~~~~~Gal~lad~GIl~IDE~dk 464 (794)
.++++|++|+|||.++........ +.++. +....+.+.++..+.... .++.|-...| ..=++|+||++.
T Consensus 129 ~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~~~~k~~~~~~~~~~~-----~~~~~f~ddinm 203 (1395)
T KOG3595|consen 129 PVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESKLDKRRSGNYGPPLG-----KKLVLFVDDINM 203 (1395)
T ss_pred eEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHHHHHHhcccCCCCCCC-----ceeEEEEeccCC
Confidence 689999999999999877766543 33232 111112222221111100 1111111111 123899999984
Q ss_pred C------ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC-CCCCCCCCCccCcccc--cCccccHHHHHHH
Q 003809 465 M------DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA-GGRYDKSKPLKKHEDA--LAPAFTTAQLKRY 535 (794)
Q Consensus 465 ~------~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~-~Gryd~~~~l~~~~~~--~~~~~~~~~lr~y 535 (794)
- .......+++.++.+...-.+.+..... -++.+++|+||. +||++-...+.++-.. ...+-....-+-|
T Consensus 204 p~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i-~~i~~~~a~~~~~~gr~~i~~r~~r~f~~~~~~~~~~~sl~~if 282 (1395)
T KOG3595|consen 204 PALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEI-ENVQLVGAMNPPGGGRNDITERFLRHFLIVSLNYPSQESLTQIF 282 (1395)
T ss_pred chhhhcCCccHHHHHHHHHHhceeecccccceeEE-eeeEEEeecCCCCCccCcccHHHHHHeeeEeeCCCChhhHHHHH
Confidence 2 2224567888888777665443444443 479999999964 4777665554411111 1111111111122
Q ss_pred HHHHhc---cCCcC---CHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHH
Q 003809 536 IAYAKT---LKPKL---SLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIR 586 (794)
Q Consensus 536 i~~ar~---~~P~l---s~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliR 586 (794)
-.+... +.|.+ ........+.+|...+..-.....+..+-+++|.+..+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~ 339 (1395)
T KOG3595|consen 283 NTILTGHLRFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQ 339 (1395)
T ss_pred HHHHhcccCccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhhee
Confidence 222221 11111 4445666777777776665433445567788888877776
No 308
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.66 E-value=0.084 Score=52.43 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-++|.||+|+|||+|+|.++.+.+.
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCC
Confidence 6899999999999999999998665
No 309
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.62 E-value=0.044 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEeCCCcchHHHHHHHHHhhC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
|+|.|.||+|||++++.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999976
No 310
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.45 E-value=0.056 Score=54.06 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=22.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
-++++|+||+|||++++.+++.+.....
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999976644333
No 311
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.44 E-value=0.074 Score=53.74 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=24.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.++|+||+|+|||+|++.++...+..++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 68999999999999999999987654444
No 312
>PRK06762 hypothetical protein; Provisional
Probab=93.41 E-value=0.07 Score=52.58 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
-++|+|.||+|||++++.+++.++..+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~ 30 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGT 30 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 478999999999999999999875433
No 313
>PRK14526 adenylate kinase; Provisional
Probab=93.40 E-value=0.073 Score=55.24 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=24.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+++|+|+||+|||++++.+++..+...+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 68999999999999999999876544433
No 314
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.40 E-value=0.07 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.1
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
++|+|+||+|||++++.+++.+....
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~ 27 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPF 27 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEE
Confidence 68999999999999999999754433
No 315
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.39 E-value=0.083 Score=52.88 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=26.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
+|+|+|++|+|||++++.++..+...++..
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~vd~ 35 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEEC
Confidence 799999999999999999999876655543
No 316
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.27 E-value=0.067 Score=52.58 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=21.5
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
++|+|+||+|||++++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 478999999999999999998763
No 317
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.26 E-value=0.28 Score=51.82 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=111.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc----eeecCCccCccccccccccCCCCc-ccccc-------cCceeecC----C
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS----VYTSGKSSSAAGLTASVAKEPETG-EFCIE-------AGALMLAD----N 454 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~----~~~~g~~ss~~gLt~~v~~d~~~g-~~~~~-------~Gal~lad----~ 454 (794)
=+.++|+-|+|||.+.|++...++.. ++......+.+++..+++.+-.+. .|.+. -+...+.. +
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 47999999999999999777776653 233333333344433333322111 11111 11111111 2
Q ss_pred CeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCcc---Cc-cc-ccCccccH
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLK---KH-ED-ALAPAFTT 529 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~---~~-~~-~~~~~~~~ 529 (794)
-++++||.+-+..+...+|.-.++--. ......+++-..-|.-.+--+...+. .+ .- ..-++++.
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~----------~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEE----------DSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhcc----------cccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 378999999999988888777764111 11112445555555431100000011 00 01 22356778
Q ss_pred HHHHHHHHHHh----ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Q 003809 530 AQLKRYIAYAK----TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHV 605 (794)
Q Consensus 530 ~~lr~yi~~ar----~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv 605 (794)
+....|+.+-- .-.|.++++|...+... ....||....+..+|.-.|....++.|+...+
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~----------------sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEA----------------SQGIPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHH----------------hccchHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 87777776543 35688899888877541 11258999999999999999999999988776
Q ss_pred HH
Q 003809 606 RV 607 (794)
Q Consensus 606 ~e 607 (794)
..
T Consensus 267 ~~ 268 (269)
T COG3267 267 KN 268 (269)
T ss_pred cc
Confidence 53
No 318
>PRK02496 adk adenylate kinase; Provisional
Probab=93.24 E-value=0.072 Score=53.54 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=24.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.++++|+||+|||++++.+++........
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 68999999999999999999876554443
No 319
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.23 E-value=0.095 Score=53.69 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=16.4
Q ss_pred EEEeCCCcchHHHHHHHHHhhC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7999999999998766555543
No 320
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.23 E-value=0.074 Score=44.86 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEeCCCcchHHHHHHHHHhhC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+.+.|+||+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999975
No 321
>PRK14528 adenylate kinase; Provisional
Probab=93.17 E-value=0.084 Score=53.50 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
++++.|+||+|||++++.+++......+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 68999999999999999999876554443
No 322
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.08 E-value=0.081 Score=54.55 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=22.8
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
|+++|+||+|||++++.+++.......
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i 28 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI 28 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 799999999999999999986654443
No 323
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.04 E-value=0.077 Score=53.01 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=23.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
.|+|.|+||+|||++++.+++.++...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~ 30 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPW 30 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 489999999999999999999876543
No 324
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=92.97 E-value=0.64 Score=50.87 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=61.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
=++|+|+.|+|||++++.+..+++....+. .+...+. .. ....+. .-.+...-+++.||+..-.....
T Consensus 78 ~~~l~G~g~nGKStl~~~l~~l~G~~~~~~---~~~~~~~-~~----~~~~f~----~a~l~gk~l~~~~E~~~~~~~~~ 145 (304)
T TIGR01613 78 LFFLYGNGGNGKSTFQNLLSNLLGDYATTA---VASLKMN-EF----QEHRFG----LARLEGKRAVIGDEVQKGYRDDE 145 (304)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhChhhccC---Ccchhhh-hc----cCCCch----hhhhcCCEEEEecCCCCCccccH
Confidence 588999999999999999999887533110 0100011 00 111111 11233455788999975433344
Q ss_pred HHHHHHhhccEEEEeecce-EEeecCceEEEEecCCCC
Q 003809 471 VAIHEAMEQQTISITKAGI-QATLNARTSILAAANPAG 507 (794)
Q Consensus 471 ~~L~eame~~~isi~kaG~-~~~l~ar~siiAaaNP~~ 507 (794)
..|-.+.....+++...+. .......+.++.++|-.+
T Consensus 146 ~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P 183 (304)
T TIGR01613 146 STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLP 183 (304)
T ss_pred HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCC
Confidence 4555555566777764443 334445688899999765
No 325
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.95 E-value=0.38 Score=53.22 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCeEEecccccCChhhHHHHHHHhhc
Q 003809 454 NGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 454 ~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
.-|++||+.++|+....++|+..||+
T Consensus 108 ~KV~iI~~a~~m~~~AaNaLLKtLEE 133 (325)
T PRK06871 108 NKVVYIQGAERLTEAAANALLKTLEE 133 (325)
T ss_pred ceEEEEechhhhCHHHHHHHHHHhcC
Confidence 34999999999999999999999985
No 326
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.93 E-value=0.058 Score=51.89 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+++++|+||+|||+++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999988753
No 327
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.90 E-value=0.095 Score=50.03 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=25.1
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcceeecC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVYTSG 421 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g 421 (794)
|+|+|+||+|||++++.++..+...++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999998766555443
No 328
>PLN02200 adenylate kinase family protein
Probab=92.86 E-value=0.1 Score=54.99 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=25.1
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
..|+++|+||+|||++++.+++.++...+.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 478999999999999999999877654443
No 329
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.83 E-value=0.17 Score=48.58 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=22.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.++|.|+.|+|||+|++.+++.++.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999998764
No 330
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.70 E-value=0.09 Score=53.02 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=48.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccccccccccC--CCCcccc-cccCceeecCCCeEEecccc-
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGLTASVAKE--PETGEFC-IEAGALMLADNGICCIDEFD- 463 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gLt~~v~~d--~~~g~~~-~~~Gal~lad~GIl~IDE~d- 463 (794)
-+.|+|+.|+|||+|++.++.+.+.. +...|.. .+ .+..+ -.+|+.. +.-......+..++++||-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---i~---~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PV---YKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---EE---EEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 58899999999999999999987642 2112210 11 11111 1122211 11112223356799999976
Q ss_pred cCChhhHHHHHHHhh
Q 003809 464 KMDIRDQVAIHEAME 478 (794)
Q Consensus 464 k~~~~~~~~L~eame 478 (794)
.+++..+..+.+++.
T Consensus 101 ~LD~~~~~~l~~~l~ 115 (177)
T cd03222 101 YLDIEQRLNAARAIR 115 (177)
T ss_pred cCCHHHHHHHHHHHH
Confidence 678887776666664
No 331
>PF13245 AAA_19: Part of AAA domain
Probab=92.69 E-value=0.12 Score=44.76 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=17.0
Q ss_pred EEEeCCCcchHH-HHHHHHHhhC
Q 003809 392 VCIVGDPSCAKS-QFLKYAAGIV 413 (794)
Q Consensus 392 iLLvG~PGtGKS-~Ll~~i~~~~ 413 (794)
+++.|+|||||| ++++.++.+.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 566999999999 5666666655
No 332
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.67 E-value=0.094 Score=48.18 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=20.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+|+++|++|+|||+|++.+......
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 4899999999999999999876443
No 333
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.64 E-value=0.15 Score=56.71 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=23.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
|+|++|++|+|||++++++....|.
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCC
Confidence 8999999999999999999988764
No 334
>PRK13764 ATPase; Provisional
Probab=92.64 E-value=0.16 Score=60.52 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
++|++|+||+|||+++++++..++.
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999999999988763
No 335
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.64 E-value=0.037 Score=57.04 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-+.++||+|+|||+|+|.+..+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999998875
No 336
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.63 E-value=0.089 Score=55.40 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
=+.|+||+|||||+|++.++.+...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3899999999999999999998654
No 337
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.60 E-value=0.12 Score=53.59 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+++|+||+|||++++.+++..+...+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 58999999999999999999887654444
No 338
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=92.59 E-value=0.072 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.5
Q ss_pred ccceeEEEeCCCcchHHHHHHHHH
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~ 410 (794)
|....+||+|+||+|||++++.++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 344579999999999999999875
No 339
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.54 E-value=0.13 Score=57.08 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=24.5
Q ss_pred CCCeEEecccccCChhhHHHHHHHhhc
Q 003809 453 DNGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 453 d~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
..-|++||+.++|+....++|+..||+
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEE 134 (334)
T PRK07993 108 GAKVVWLPDAALLTDAAANALLKTLEE 134 (334)
T ss_pred CceEEEEcchHhhCHHHHHHHHHHhcC
Confidence 345999999999999999999999985
No 340
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.53 E-value=0.26 Score=54.90 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
++|++||+|+|||++++++....+
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 699999999999999999888655
No 341
>PF05729 NACHT: NACHT domain
Probab=92.47 E-value=0.089 Score=50.97 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEeCCCcchHHHHHHHHHhh
Q 003809 392 VCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+|+||+|||++++.++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998865
No 342
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.44 E-value=0.56 Score=50.38 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=45.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCcc--CccccccccccCCCCc-ccccccCceeecCCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSS--SAAGLTASVAKEPETG-EFCIEAGALMLADNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~s--s~~gLt~~v~~d~~~g-~~~~~~Gal~lad~GIl~IDE~dk 464 (794)
.+++.|++|+|||++++++....+.. +.+..... ...+.....+.. ..+ .|.----.....+--+++++|+..
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~-~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNE-KAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCC-cCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 68999999999999999887665431 22211100 001111111110 111 010000112234667999999975
Q ss_pred CChhhHHHHHHHhhccEE
Q 003809 465 MDIRDQVAIHEAMEQQTI 482 (794)
Q Consensus 465 ~~~~~~~~L~eame~~~i 482 (794)
. +...++++++..|..
T Consensus 161 ~--e~a~~~~~aa~tGh~ 176 (264)
T cd01129 161 A--ETAEIAVQAALTGHL 176 (264)
T ss_pred H--HHHHHHHHHHHcCCc
Confidence 3 333456677766654
No 343
>PRK13946 shikimate kinase; Provisional
Probab=92.41 E-value=0.13 Score=51.95 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=27.5
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
.-+|+|+|.||+|||++++.+++.+...++.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~ 41 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDA 41 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECc
Confidence 34899999999999999999999887766643
No 344
>PRK14529 adenylate kinase; Provisional
Probab=92.39 E-value=0.1 Score=54.67 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=23.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
+|+|+|+||+|||++++.+++.+....
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~ 28 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAH 28 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 689999999999999999999765433
No 345
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.26 E-value=0.12 Score=51.78 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=27.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
||.|+|.+|+|||++.+.+++.+...++.
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D 32 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFID 32 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCccc
Confidence 79999999999999999999999887775
No 346
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.26 E-value=0.11 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-++|+|+||+|||++++.++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998764
No 347
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=92.11 E-value=0.2 Score=62.86 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=48.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc---ceee---cCCcc----CccccccccccCCCCcccccccCceeecCCCeEEec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR---SVYT---SGKSS----SAAGLTASVAKEPETGEFCIEAGALMLADNGICCID 460 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~---~~~~---~g~~s----s~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~ID 460 (794)
-+++.|.||||||++++.+...... .+.. +|+.. ...|+.+..+.... .....|...+....+++||
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll---~~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLE---HGWGQGRDLLTSRDVLVID 440 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHH---hhhcccccccccCcEEEEE
Confidence 3689999999999999988765422 2221 11100 00111111100000 0011233345566799999
Q ss_pred ccccCChhhHHHHHHHhh
Q 003809 461 EFDKMDIRDQVAIHEAME 478 (794)
Q Consensus 461 E~dk~~~~~~~~L~eame 478 (794)
|...++......|+...+
T Consensus 441 EASMv~~~~m~~LL~~a~ 458 (988)
T PRK13889 441 EAGMVGTRQLERVLSHAA 458 (988)
T ss_pred CcccCCHHHHHHHHHhhh
Confidence 999999988877777553
No 348
>PRK08233 hypothetical protein; Provisional
Probab=92.11 E-value=0.12 Score=51.50 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
=|.+.|+||+|||++++.++..++.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 4788899999999999999998763
No 349
>PRK14527 adenylate kinase; Provisional
Probab=92.09 E-value=0.12 Score=52.48 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS 416 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~ 416 (794)
-++++|+||+|||++++.+++.....
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~~ 33 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGLK 33 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48999999999999999998765443
No 350
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.02 E-value=0.15 Score=50.47 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=25.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+++|+|.||+|||++++.+++.+...++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 68999999999999999999988776664
No 351
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.00 E-value=0.2 Score=49.03 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=50.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCcc---cccc--ccccCCCCccccc-ccCceeecCCCeEEecc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAA---GLTA--SVAKEPETGEFCI-EAGALMLADNGICCIDE 461 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~---gLt~--~v~~d~~~g~~~~-~~Gal~lad~GIl~IDE 461 (794)
.++|+|++|+|||+|++.++...+.. ++..+...... .... ...-.-.+|+... .-......+..++++||
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 68999999999999999999987642 11121110000 0000 0000011232111 11122223568999999
Q ss_pred cc-cCChhhHHHHHHHhh
Q 003809 462 FD-KMDIRDQVAIHEAME 478 (794)
Q Consensus 462 ~d-k~~~~~~~~L~eame 478 (794)
.. .++...+..+.+++.
T Consensus 107 p~~~lD~~~~~~l~~~l~ 124 (157)
T cd00267 107 PTSGLDPASRERLLELLR 124 (157)
T ss_pred CCcCCCHHHHHHHHHHHH
Confidence 87 788888888888775
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.94 E-value=0.15 Score=49.45 Aligned_cols=82 Identities=26% Similarity=0.323 Sum_probs=50.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCccccccccccCCCCcccccc--cCceeecCCCeEEecccc-c
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAAGLTASVAKEPETGEFCIE--AGALMLADNGICCIDEFD-K 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~gLt~~v~~d~~~g~~~~~--~Gal~lad~GIl~IDE~d-k 464 (794)
.+.|+|++|+|||+|++.++.+.+.. ++..+. ...++. ..-..|+...- +-++ ..+.-++++||-. .
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~----~~lS~G~~~rv~laral-~~~p~illlDEP~~~ 100 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYF----EQLSGGEKMRLALAKLL-LENPNLLLLDEPTNH 100 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEE----ccCCHHHHHHHHHHHHH-hcCCCEEEEeCCccC
Confidence 68999999999999999999987642 111111 001111 00112221111 1122 2356799999976 7
Q ss_pred CChhhHHHHHHHhhc
Q 003809 465 MDIRDQVAIHEAMEQ 479 (794)
Q Consensus 465 ~~~~~~~~L~eame~ 479 (794)
++...+..+.+.+.+
T Consensus 101 LD~~~~~~l~~~l~~ 115 (144)
T cd03221 101 LDLESIEALEEALKE 115 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888888864
No 353
>PLN02459 probable adenylate kinase
Probab=91.90 E-value=0.15 Score=54.56 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=24.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
++++|+|+||+|||++++.+++.......
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i 58 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI 58 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 47999999999999999999987654333
No 354
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.84 E-value=0.22 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=23.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+++++|++|+|||+|++++....|.
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCc
Confidence 8999999999999999999988764
No 355
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.84 E-value=0.05 Score=57.94 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|+|.++.++++
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 5899999999999999999997653
No 356
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=91.84 E-value=0.085 Score=58.75 Aligned_cols=103 Identities=18% Similarity=0.388 Sum_probs=56.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc------cCCC-------CcccccccCcee----ecC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA------KEPE-------TGEFCIEAGALM----LAD 453 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~------~d~~-------~g~~~~~~Gal~----lad 453 (794)
.+.|+|+-|||||+|........|. +...-+ ..-.+....+- +... ...|.+.|-..+ ..+
T Consensus 116 GlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqR-vHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa~e 193 (467)
T KOG2383|consen 116 GLYLYGSVGCGKTMLMDLFYDALPP-IWRKQR-VHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIAEE 193 (467)
T ss_pred eEEEecccCcchhHHHHHHhhcCCc-hhhhhh-hhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHhhh
Confidence 5899999999999999998877665 221110 01111111110 0000 001222221111 123
Q ss_pred CCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 454 NGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 454 ~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
-.++|+|||.--+-.+--.|...|+.- +...+.++||+|..+
T Consensus 194 a~lLCFDEfQVTDVADAmiL~rLf~~L------------f~~GvVlvATSNR~P 235 (467)
T KOG2383|consen 194 AILLCFDEFQVTDVADAMILKRLFEHL------------FKNGVVLVATSNRAP 235 (467)
T ss_pred ceeeeechhhhhhHHHHHHHHHHHHHH------------HhCCeEEEEeCCCCh
Confidence 568999999877666655555555321 112467789999775
No 357
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.77 E-value=0.13 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=22.1
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
++|+||+|+|||+|++.++...+.
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccCcc
Confidence 799999999999999999997765
No 358
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.75 E-value=0.12 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.0
Q ss_pred EEEeCCCcchHHHHHHHHHhh
Q 003809 392 VCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~ 412 (794)
|.|+|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999986
No 359
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.65 E-value=0.16 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.++++|+||+|||++++.+++.++.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~ 28 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPK 28 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCC
Confidence 5789999999999999999998753
No 360
>PRK13948 shikimate kinase; Provisional
Probab=91.63 E-value=0.18 Score=51.02 Aligned_cols=30 Identities=13% Similarity=-0.035 Sum_probs=26.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
+|+|+|.+|+|||++.+.+++.+...++..
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~ 41 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDT 41 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEEC
Confidence 899999999999999999999887776643
No 361
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.43 E-value=0.21 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.3
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRS 416 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~ 416 (794)
++|+||+|+|||+|++.+++..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6899999999999999999987653
No 362
>PLN02674 adenylate kinase
Probab=91.38 E-value=0.19 Score=53.36 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=23.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
+|+|+|+||+||+++++.+++...-..
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~~h 59 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCLCH 59 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 799999999999999999999765433
No 363
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.36 E-value=0.2 Score=51.27 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+++|+||.|+|||+|++.+......
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 7999999999999999999988743
No 364
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.36 E-value=0.15 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-++|+|++|+|||+|++.++...|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 489999999999999999999887
No 365
>PRK06547 hypothetical protein; Provisional
Probab=91.34 E-value=0.32 Score=48.81 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
-|++.|++|+|||++++.+++.++..+
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~~~~ 43 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTGFQL 43 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 678889999999999999998755433
No 366
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.33 E-value=0.16 Score=50.17 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=26.9
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcceeecCC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK 422 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~ 422 (794)
|-+.|+||+|||++++.+++.+.-.++.+|.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~ 33 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGT 33 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccH
Confidence 6788999999999999999998887776554
No 367
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.29 E-value=0.19 Score=54.62 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=43.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce-eecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV-YTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRD 469 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~-~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~ 469 (794)
-+-|+|++++|||++++.++.....+. +...-.++..+|.. .....+...++|||+...++..
T Consensus 195 ~~hl~G~Ss~GKTt~~~~a~Sv~G~p~~l~~sw~~T~n~le~----------------~a~~~nd~~l~lDE~~~~~~~~ 258 (286)
T PF06048_consen 195 GFHLYGQSSSGKTTALQLAASVWGNPDGLIRSWNSTDNGLER----------------TAAAHNDLPLVLDELSQADPKD 258 (286)
T ss_pred EEEEEeCCCCCHHHHHHHhhhhCcCchhhhhcchhhHHHHHH----------------HHHHcCCcceEehhccccchhH
Confidence 567899999999999999998765443 11111122222221 1222345689999999988876
Q ss_pred HHHHHHHh
Q 003809 470 QVAIHEAM 477 (794)
Q Consensus 470 ~~~L~eam 477 (794)
...+.=.+
T Consensus 259 ~~~~iY~l 266 (286)
T PF06048_consen 259 VGSIIYML 266 (286)
T ss_pred HHHHHHHH
Confidence 44433333
No 368
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.25 E-value=0.27 Score=53.83 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=22.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
|++++|++|+|||++++++....|.
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc
Confidence 8999999999999999999987653
No 369
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.25 E-value=0.36 Score=53.79 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=23.6
Q ss_pred CCeEEecccccCChhhHHHHHHHhhc
Q 003809 454 NGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 454 ~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
.-|++||+.++|+....++|+..||+
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEE 158 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEE 158 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcC
Confidence 34999999999999999999999983
No 370
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.23 E-value=0.17 Score=49.68 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+++++|+|+||+|||+|++++.+-
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999988753
No 371
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.19 E-value=0.3 Score=61.79 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=51.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc---ceee---cCCcc----CccccccccccCCCCccc--ccccCceeecCCCeEE
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR---SVYT---SGKSS----SAAGLTASVAKEPETGEF--CIEAGALMLADNGICC 458 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~---~~~~---~g~~s----s~~gLt~~v~~d~~~g~~--~~~~Gal~lad~GIl~ 458 (794)
-+++.|.+|||||++++.+...... .+.. +|+.. ...|+.+..+. .| ....|...+..+.+++
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIa-----s~ll~~~~~~~~l~~~~vlV 473 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLS-----SWELRWNQGRDQLDNKTVFV 473 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHH-----HHHhhhccCccCCCCCcEEE
Confidence 4799999999999999999876432 2221 11100 01122111110 11 1123334455677999
Q ss_pred ecccccCChhhHHHHHHHhhc
Q 003809 459 IDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 459 IDE~dk~~~~~~~~L~eame~ 479 (794)
|||...++......|+..++.
T Consensus 474 IDEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 474 LDEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred EECcccCCHHHHHHHHHHHHh
Confidence 999999999998888888753
No 372
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.18 E-value=0.2 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.5
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
.|++.|.||||||++++.+..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 589999999999999999993
No 373
>PRK05439 pantothenate kinase; Provisional
Probab=91.17 E-value=0.22 Score=54.61 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=45.8
Q ss_pred ccCCCHHHHHHHHHHHcC------CchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCc
Q 003809 326 QHQFTTEEIDEIQRMRNA------PDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPS 399 (794)
Q Consensus 326 ~~~~t~~e~~~i~~~~~~------~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PG 399 (794)
...+|++|++.|+.+... .++|--|++-|.--.-+......++ -.+++.. ..+...-|.|.|+||
T Consensus 26 ~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~-~~fl~~~--------~~~~~~iIgIaG~~g 96 (311)
T PRK05439 26 PLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAAL-EQFLGKN--------GQKVPFIIGIAGSVA 96 (311)
T ss_pred CCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHhccc--------CCCCCEEEEEECCCC
Confidence 356888888887766433 2445444444432222222222222 2222211 111234688999999
Q ss_pred chHHHHHHHHHhhCC
Q 003809 400 CAKSQFLKYAAGIVP 414 (794)
Q Consensus 400 tGKS~Ll~~i~~~~p 414 (794)
+|||++++.+...+.
T Consensus 97 sGKSTla~~L~~~l~ 111 (311)
T PRK05439 97 VGKSTTARLLQALLS 111 (311)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 374
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.17 E-value=0.19 Score=41.73 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.6
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
|+ ..+|.|+.|+|||+|+.++...+
T Consensus 23 g~-~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GD-VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHH
Confidence 44 48999999999999999998764
No 375
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.16 E-value=0.85 Score=50.37 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.8
Q ss_pred CCeEEecccccCChhhHHHHHHHhhc
Q 003809 454 NGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 454 ~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
.-|++||+.++|+....++|+..+|+
T Consensus 109 ~kV~iI~~ae~m~~~AaNaLLKtLEE 134 (319)
T PRK06090 109 YRLFVIEPADAMNESASNALLKTLEE 134 (319)
T ss_pred ceEEEecchhhhCHHHHHHHHHHhcC
Confidence 34999999999999999999999985
No 376
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=91.14 E-value=0.17 Score=47.56 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=20.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|+..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999888764
No 377
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.14 E-value=0.17 Score=54.11 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=24.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS 416 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~ 416 (794)
+++++|++|+|||++++++....|..
T Consensus 129 ~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 129 NILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred EEEEECCCccccchHHHHHhhhcccc
Confidence 89999999999999999999988765
No 378
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.06 E-value=0.16 Score=56.19 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+||+|||||+++|.||.+..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998754
No 379
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=90.95 E-value=0.23 Score=48.85 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=19.1
Q ss_pred eEEEeCCCcchHHH-HHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQ-FLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~-Ll~~i~~~~p 414 (794)
++++.|++|+|||. ++..+.....
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHHHhc
Confidence 78999999999999 6666666543
No 380
>PHA02624 large T antigen; Provisional
Probab=90.77 E-value=0.32 Score=57.39 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=23.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+||+||||||||+|+.++.+++..
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999999999843
No 381
>PF13479 AAA_24: AAA domain
Probab=90.73 E-value=0.18 Score=52.33 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=21.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+.+||+|+||+|||+++..+ |+..+.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~i 29 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFI 29 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEE
Confidence 58999999999999999776 666553
No 382
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.69 E-value=0.19 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.|+++|+||+|||+|+..+...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999888764
No 383
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=90.69 E-value=0.17 Score=46.55 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=19.5
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
.|+++|.||+|||+|++++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999996
No 384
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.61 E-value=0.21 Score=50.98 Aligned_cols=23 Identities=13% Similarity=0.054 Sum_probs=21.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-+.|+|.+|+|||+|++.++..+
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999865
No 385
>PRK04040 adenylate kinase; Provisional
Probab=90.56 E-value=0.23 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.|+++|.||+|||++++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999875
No 386
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=90.56 E-value=0.2 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.4
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++.++|+++|+||+|||+|++.+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 34568999999999999999988764
No 387
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=90.54 E-value=0.21 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+|+|+|+||+|||+|++.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999888753
No 388
>PRK06851 hypothetical protein; Provisional
Probab=90.52 E-value=0.11 Score=58.13 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-++|.|+||||||+|++.++..+
T Consensus 216 ~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 216 RYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998865
No 389
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.50 E-value=0.33 Score=53.63 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
|+|++|++|+|||++++++....+
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999988753
No 390
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.49 E-value=0.14 Score=48.53 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++...+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 689999999999999999988654
No 391
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.49 E-value=0.28 Score=51.59 Aligned_cols=34 Identities=38% Similarity=0.537 Sum_probs=27.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCcc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSS 424 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~s 424 (794)
-+=|+|.+|.|||+|+|.++.+.++. +...|+.+
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~ 91 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA 91 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe
Confidence 58899999999999999999998773 33445433
No 392
>PRK04182 cytidylate kinase; Provisional
Probab=90.44 E-value=0.26 Score=48.83 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=25.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|.|.||+|||++++.+++.+...++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58999999999999999999987665554
No 393
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.43 E-value=0.18 Score=49.16 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.6
Q ss_pred EEEeCCCcchHHHHHHHHHhhC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
++|+|.||+|||++++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 394
>PRK01184 hypothetical protein; Provisional
Probab=90.43 E-value=0.24 Score=49.65 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=20.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
-|+|+|+||+|||++++. ++.....++
T Consensus 3 ~i~l~G~~GsGKsT~a~~-~~~~g~~~i 29 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI-AREMGIPVV 29 (184)
T ss_pred EEEEECCCCCCHHHHHHH-HHHcCCcEE
Confidence 489999999999999884 444443333
No 395
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=90.36 E-value=0.21 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|++.+...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999988753
No 396
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=90.33 E-value=0.21 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|++.+...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988764
No 397
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=90.33 E-value=0.21 Score=48.70 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.0
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
++|+++|+||+|||+|++.+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999977654
No 398
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.31 E-value=0.2 Score=51.46 Aligned_cols=25 Identities=12% Similarity=0.116 Sum_probs=22.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|++|+|||+|++.++..++.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5889999999999999999998763
No 399
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.03 E-value=0.28 Score=50.33 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
-+++.|.||+|||++++.++..++...
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 589999999999999999999865543
No 400
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=89.96 E-value=0.25 Score=47.36 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.5
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
+.|+++|+||+|||+|++.+..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999988875
No 401
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=89.94 E-value=0.25 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.5
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|+..+...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 58999999999999999888754
No 402
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=89.93 E-value=0.24 Score=46.88 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|+++|+||+|||+|+..+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988654
No 403
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.92 E-value=0.25 Score=50.66 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 404
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.90 E-value=0.26 Score=48.39 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
-|.+.|+||+|||++++.+++.++..++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999987665554
No 405
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=89.89 E-value=0.9 Score=48.96 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=57.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
-++|+|||+||||.|+.+|++.+|..-...... ..|.+.- ..++-+++-||. .|.....
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~n----------------~nF~f~d----~~~k~l~~weE~-~~~~~~v 173 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWNN----------------NNFPFQD----CFNKRLIWWEEP-NMYPDEV 173 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHSCCEEEEECTT----------------TCCCCCC----CCCECEEECTCG-GCCTTCH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCcccEeccCC----------------CCCChhh----hhhccEEEeccc-CccHHHH
Confidence 489999999999999999999886522221111 1111110 112346677777 4556666
Q ss_pred HHHHHHhhccEEEEe-ecceEEeecCceEEEEecCCC
Q 003809 471 VAIHEAMEQQTISIT-KAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 471 ~~L~eame~~~isi~-kaG~~~~l~ar~siiAaaNP~ 506 (794)
..+...+.-..+.+. |......+. ++-+|.++|-.
T Consensus 174 e~~K~ilgG~~v~vd~K~k~~~~~~-~tPviItsn~d 209 (271)
T PF01057_consen 174 ETAKMILGGTPVRVDVKNKDSEELE-RTPVIITSNND 209 (271)
T ss_dssp HHHHHCCTTSEEEEEETTTEEEEEE-EEEEEEEECCE
T ss_pred HHHHHHhCCCceEeecccCCceEec-CCceEEEeccc
Confidence 677777777777775 333344444 66667777754
No 406
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=89.88 E-value=0.24 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.5
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.++++|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 407
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=89.83 E-value=0.53 Score=51.73 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=26.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|.|+|.||+|||++++.++..+...++.
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 89999999999999999999988776664
No 408
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=89.75 E-value=0.25 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+++++|+||+|||+|++.+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988653
No 409
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=89.71 E-value=0.21 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred EEEeCCCcchHHHHHHHHHhhCC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
|+|+|.||+|||++++.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998764
No 410
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=89.70 E-value=0.25 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=19.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
++++++|++|+|||+|+..+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999988864
No 411
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=89.63 E-value=0.24 Score=48.23 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
||+++|++|+|||+|++.+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 5899999999999999998764
No 412
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=89.62 E-value=0.26 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.0
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|++.+...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999887653
No 413
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.62 E-value=0.25 Score=49.36 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=17.1
Q ss_pred EEEeCCCcchHHHHHHHHHh
Q 003809 392 VCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~ 411 (794)
+|+.|+||||||.|+..++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999876544
No 414
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=89.60 E-value=0.51 Score=46.90 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=20.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-++|+|++|+|||+|+.++....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999987653
No 415
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.57 E-value=0.25 Score=50.18 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=20.5
Q ss_pred EEEeCCCcchHHHHHHHHHhhC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
|.|.|++|+|||+|++.+...+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999986
No 416
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=89.50 E-value=0.47 Score=52.41 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=20.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
|++++|+||+|||++++++...
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999875
No 417
>PRK05480 uridine/cytidine kinase; Provisional
Probab=89.50 E-value=0.32 Score=49.90 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=22.4
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.-|.|.|++|+|||+|++.+++.+
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 418
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=89.46 E-value=0.3 Score=47.17 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.3
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
..|+++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999887764
No 419
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=89.46 E-value=0.33 Score=48.86 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.++|++|+|||++++.++..+..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4799999999999999999998765
No 420
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=89.35 E-value=0.3 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.++++|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999888764
No 421
>PRK13808 adenylate kinase; Provisional
Probab=89.35 E-value=0.32 Score=53.86 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=24.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|+||+|||++++.++..+....+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is 30 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 68999999999999999999987654444
No 422
>PRK05541 adenylylsulfate kinase; Provisional
Probab=89.33 E-value=0.26 Score=49.16 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.|+|+|+||+|||++++.++..+.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999988764
No 423
>PRK08356 hypothetical protein; Provisional
Probab=89.25 E-value=0.43 Score=48.55 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.4
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+|+||+|||++++++.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 424
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.25 E-value=0.32 Score=50.55 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5899999999999999999987653
No 425
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=89.14 E-value=0.29 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 589999999999999999998764
No 426
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=89.08 E-value=0.64 Score=50.55 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=48.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee--ecCC--ccCccccccccccCCCC------------cccccccCceeecCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY--TSGK--SSSAAGLTASVAKEPET------------GEFCIEAGALMLADN 454 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~--~~g~--~ss~~gLt~~v~~d~~~------------g~~~~~~Gal~lad~ 454 (794)
-.||.||+|+||+.++..+++.+--... .+.+ ...-+++.. +..+..+ ......| ..+..
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p---~e~~~ 96 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHP---YESPY 96 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCc---cCCCc
Confidence 3679999999999999998887421100 0000 000111100 0000000 0000111 11234
Q ss_pred CeEEecccccCChhhHHHHHHHhhc
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
-|++||+.++|+.+.+++|+..||+
T Consensus 97 kv~ii~~ad~mt~~AaNaLLK~LEE 121 (290)
T PRK05917 97 KIYIIHEADRMTLDAISAFLKVLED 121 (290)
T ss_pred eEEEEechhhcCHHHHHHHHHHhhc
Confidence 5999999999999999999999985
No 427
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.99 E-value=0.41 Score=48.63 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
=++|+||+|+|||+|++.+.+..|.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4899999999999999999887765
No 428
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=88.88 E-value=0.31 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+.|.||+|||||+++|.|+.+-.+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999997443
No 429
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=88.88 E-value=0.33 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.9
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
++++++|+||+|||+|++.+..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999865
No 430
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=88.84 E-value=0.31 Score=46.62 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=18.8
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
+|+++|+||+|||+|++.+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 379999999999999998865
No 431
>PLN02165 adenylate isopentenyltransferase
Probab=88.81 E-value=0.41 Score=52.96 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=26.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSG 421 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g 421 (794)
.++|+||+|+|||+|+..++..++..+...+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 6899999999999999999999876555433
No 432
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=88.78 E-value=0.34 Score=49.73 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998754
No 433
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=88.77 E-value=0.35 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.9
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|+..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC
Confidence 48999999999999999876653
No 434
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=88.69 E-value=0.44 Score=49.69 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=26.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK 422 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~ 422 (794)
.|.|.||+|+|||++++.+++.++..++.+|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~ 35 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGA 35 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCch
Confidence 68999999999999999999887766555443
No 435
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.67 E-value=0.4 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=18.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
=++++|+||+|||+|+..++..
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999777653
No 436
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.65 E-value=0.35 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999987653
No 437
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.65 E-value=0.48 Score=51.58 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.9
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.=|.|.|++|+|||++++.+..++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999988764
No 438
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=88.64 E-value=0.31 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|+++|+||+|||+|++.+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 4799999999999999888754
No 439
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=88.64 E-value=0.3 Score=46.37 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEeCCCcchHHHHHHHHHhh
Q 003809 392 VCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~ 412 (794)
|+|+|++|+|||+|++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998775
No 440
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.62 E-value=0.35 Score=49.79 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=20.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-++|+||+|+|||+|++.+.+..+
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCC
Confidence 478899999999999999987644
No 441
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.61 E-value=0.36 Score=49.52 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999998754
No 442
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=88.60 E-value=0.36 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998754
No 443
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=88.58 E-value=0.36 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 444
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=88.57 E-value=0.38 Score=47.58 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=23.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 7899999999999999999998764
No 445
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=88.53 E-value=0.3 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|+++|+||+|||+|++.+...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 5899999999999999888764
No 446
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=88.45 E-value=0.35 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
+.|+++|++|+|||+|++.+..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999988875
No 447
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=88.43 E-value=0.23 Score=48.17 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.1
Q ss_pred EeCCCcchHHHHHHHHHhhCCcc
Q 003809 394 IVGDPSCAKSQFLKYAAGIVPRS 416 (794)
Q Consensus 394 LvG~PGtGKS~Ll~~i~~~~p~~ 416 (794)
|+|+||+|||++++.+++...-.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~ 23 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV 23 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE
T ss_pred CcCCCCCChHHHHHHHHHhcCcc
Confidence 68999999999999999986543
No 448
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=88.39 E-value=0.35 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 589999999999999999998764
No 449
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=88.37 E-value=0.36 Score=46.82 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=18.9
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
-|+++|+||+|||+|++.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999988875
No 450
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.33 E-value=0.32 Score=48.43 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+|.||+|||++++.++..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998763
No 451
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=88.33 E-value=0.38 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998764
No 452
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=88.32 E-value=0.38 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++++|+||+|||+|+..+..-
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999988764
No 453
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=88.31 E-value=0.36 Score=47.16 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.1
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
+|+++|+||+|||+|+..+..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999966543
No 454
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=88.31 E-value=0.37 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=23.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
|++|+|+||+|||+|++.++...+.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCC
Confidence 8999999999999999999998765
No 455
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=88.28 E-value=0.34 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|.|+|+||+|||+|++.+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 456
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=88.27 E-value=0.38 Score=49.61 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 689999999999999999998764
No 457
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=88.23 E-value=0.4 Score=46.83 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.4
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
+.|+++|++|+|||+|++.+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999987764
No 458
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=88.23 E-value=0.39 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
..++++|+||+|||+|+..+..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999988865
No 459
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.22 E-value=0.88 Score=47.20 Aligned_cols=21 Identities=38% Similarity=0.369 Sum_probs=19.2
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
-++|.||.|+|||++++.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 489999999999999999984
No 460
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.21 E-value=0.4 Score=48.72 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998764
No 461
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=88.12 E-value=0.53 Score=48.40 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=21.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
++.|+|++|+|||+|++.+...+.
T Consensus 24 ~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 24 VLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999887644
No 462
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=88.09 E-value=0.38 Score=49.56 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998764
No 463
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=88.08 E-value=0.39 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=19.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.|+++|+||+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999888753
No 464
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=88.03 E-value=0.41 Score=47.05 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=19.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
++|+++|+||+|||+|+..+..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999988764
No 465
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=88.01 E-value=0.68 Score=61.32 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=49.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc-------ceee---cCCcc---CccccccccccCCCCccc--ccccCceeecCCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR-------SVYT---SGKSS---SAAGLTASVAKEPETGEF--CIEAGALMLADNG 455 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~-------~~~~---~g~~s---s~~gLt~~v~~d~~~g~~--~~~~Gal~lad~G 455 (794)
-++|.|.||||||++++.+...+.. .+.. +|+.. ...|+.+..+... -+.+ ....|......+.
T Consensus 986 ~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~Gi~A~TI~s~-L~~~~~~~~~~~~~~~~~~ 1064 (1747)
T PRK13709 986 FTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASF-LHDTQLQQRSGETPDFSNT 1064 (1747)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhcCcchhhHHHH-hcccccccccccCCCCCCc
Confidence 6899999999999999998776421 1111 11100 0012211100000 0000 0011222223467
Q ss_pred eEEecccccCChhhHHHHHHHhhc
Q 003809 456 ICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 456 Il~IDE~dk~~~~~~~~L~eame~ 479 (794)
+++|||...++......|+.+++.
T Consensus 1065 llIVDEaSMv~~~~m~~Ll~~~~~ 1088 (1747)
T PRK13709 1065 LFLLDESSMVGNTDMARAYALIAA 1088 (1747)
T ss_pred EEEEEccccccHHHHHHHHHhhhc
Confidence 999999999999998888888763
No 466
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=87.97 E-value=0.4 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 467
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=87.95 E-value=0.43 Score=47.74 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 6899999999999999999987653
No 468
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=87.95 E-value=0.38 Score=44.50 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.4
Q ss_pred eEEEeCCCcchHHHHHHHHH
Q 003809 391 NVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~ 410 (794)
-++|+|++|+|||+|++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999976
No 469
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=87.94 E-value=0.4 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 470
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=87.92 E-value=0.35 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=21.8
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..|||++|++|+|||+|++.+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhc
Confidence 469999999999999999999874
No 471
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=87.91 E-value=0.4 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.1
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.++++|+||+|||+|+..+...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999888754
No 472
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.90 E-value=0.38 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.+.||+|||||+|++.++.+.++
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCc
Confidence 5889999999999999999998765
No 473
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.88 E-value=0.45 Score=50.03 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|+.|+|||+|++.++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999987653
No 474
>COG1485 Predicted ATPase [General function prediction only]
Probab=87.88 E-value=0.28 Score=54.10 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=53.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCC--CCcc-cccccCcee-ecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEP--ETGE-FCIEAGALM-LADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~--~~g~-~~~~~Gal~-lad~GIl~IDE~dk~~ 466 (794)
.+.|.|+-|.|||.|+......+|...-.- ..-......+.+.- -.|+ -.+.+-+-- .++--++|+|||.--+
T Consensus 67 GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R---~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~VtD 143 (367)
T COG1485 67 GLYLWGGVGRGKTMLMDLFYESLPGERKRR---LHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVTD 143 (367)
T ss_pred eEEEECCCCccHHHHHHHHHhhCCcccccc---ccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeecC
Confidence 489999999999999999999887632100 00000000000000 0010 001111111 1234699999998666
Q ss_pred hhh---HHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 467 IRD---QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 467 ~~~---~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
..+ ...|+++| +.-.++++||+|-.+
T Consensus 144 I~DAMiL~rL~~~L---------------f~~GV~lvaTSN~~P 172 (367)
T COG1485 144 IADAMILGRLLEAL---------------FARGVVLVATSNTAP 172 (367)
T ss_pred hHHHHHHHHHHHHH---------------HHCCcEEEEeCCCCh
Confidence 554 34445544 122478889999776
No 475
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.87 E-value=0.3 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.7
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
|.|.|+||+|||+|++.++..+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 678999999999999999998764
No 476
>PLN02199 shikimate kinase
Probab=87.87 E-value=0.8 Score=49.83 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|.+|+|||++++.+++.+...++.
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fID 132 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFD 132 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 89999999999999999999987766664
No 477
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=87.84 E-value=0.42 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998764
No 478
>PRK13695 putative NTPase; Provisional
Probab=87.80 E-value=0.42 Score=47.64 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+++|+|+||+|||+|++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999997665
No 479
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=87.80 E-value=0.52 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEeCCCcchHHHHHHHHHhhCC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
|.+.|.||+|||++++.+++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999864
No 480
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=87.80 E-value=0.46 Score=47.35 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC
Confidence 5899999999999999999988654
No 481
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=87.79 E-value=0.42 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
+.|+++|++|+|||+|++.+..
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999988764
No 482
>PRK12608 transcription termination factor Rho; Provisional
Probab=87.79 E-value=0.47 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.+||+|+||||||+|++.+++.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999988754
No 483
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=87.79 E-value=0.43 Score=48.14 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 484
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.77 E-value=0.45 Score=47.42 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|+.|+|||+|++.++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999987654
No 485
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=87.77 E-value=0.41 Score=49.16 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998754
No 486
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.73 E-value=0.44 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998754
No 487
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=87.72 E-value=0.42 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998754
No 488
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=87.68 E-value=0.41 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=23.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
++|+.|++|+|||+|+|+++.+=|-
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCcc
Confidence 8999999999999999999998764
No 489
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=87.67 E-value=0.43 Score=50.49 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999987653
No 490
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=87.59 E-value=0.41 Score=45.39 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=19.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.|+++|+||+|||+|+..+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999887653
No 491
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=87.58 E-value=0.37 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=21.1
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
|+|.|+|.|.+|||+|..++...-
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~ 24 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK 24 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 689999999999999999998754
No 492
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=87.58 E-value=0.45 Score=49.17 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 493
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=87.56 E-value=0.46 Score=46.96 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=21.5
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
|--+.++++|++|+|||.|++.+...
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~ 27 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR 27 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC
Confidence 33468999999999999999887653
No 494
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.54 E-value=0.45 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|+.|+|||+|++.++.+.++
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999987653
No 495
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=87.47 E-value=0.52 Score=55.19 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=34.1
Q ss_pred hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC
Q 003809 373 LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK 422 (794)
Q Consensus 373 ~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~ 422 (794)
+|++.-...-....|| ..|.|.|++|+|||++++.+++.++.....+|.
T Consensus 269 ~g~~RLIDN~~~~~~~-~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~ 317 (512)
T PRK13477 269 CGSTRLIDNVFLMKRQ-PIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGA 317 (512)
T ss_pred eCCeEEEeeeEeccCC-cEEEEECCCCCCHHHHHHHHHHHcCCeEecCCc
Confidence 3555433333445566 579999999999999999999988644444443
No 496
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=87.41 E-value=0.44 Score=45.95 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.9
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
.|+++|+||+|||+|++.+..
T Consensus 2 ki~liG~~~~GKSsli~~l~~ 22 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMY 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988764
No 497
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.39 E-value=0.44 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 589999999999999999998764
No 498
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=87.37 E-value=0.51 Score=50.51 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=17.8
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
-+++.|+||||||+|+-.++.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999876544
No 499
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.35 E-value=0.47 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|+.|+|||+|++.++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999987654
No 500
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=87.35 E-value=0.55 Score=47.04 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+|+.|+||+|||+++..++...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~ 27 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL 27 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC
Confidence 5899999999999999999887653
Done!