Query 003809
Match_columns 794
No_of_seqs 416 out of 3081
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 3.7E-91 1.3E-95 818.5 34.7 549 15-619 3-594 (595)
2 3f8t_A Predicted ATPase involv 100.0 3.9E-65 1.3E-69 568.6 24.3 355 194-628 109-503 (506)
3 1ltl_A DNA replication initiat 100.0 5.2E-52 1.8E-56 443.4 26.9 276 3-352 1-279 (279)
4 2vl6_A SSO MCM N-TER, minichro 100.0 5.4E-50 1.9E-54 425.8 27.2 229 15-251 9-242 (268)
5 2klq_A CBD, P105MCM, DNA repli 100.0 8.7E-30 3E-34 234.1 9.2 112 676-794 2-113 (114)
6 2r44_A Uncharacterized protein 99.9 1.5E-21 5.2E-26 212.2 22.6 248 345-612 16-297 (331)
7 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 2.2E-21 7.4E-26 222.4 17.1 244 345-615 11-289 (500)
8 1g8p_A Magnesium-chelatase 38 99.8 7.5E-20 2.6E-24 199.4 17.9 237 356-616 24-326 (350)
9 3k1j_A LON protease, ATP-depen 99.7 4.7E-18 1.6E-22 199.9 14.6 232 356-611 41-374 (604)
10 1ofh_A ATP-dependent HSL prote 99.5 1.1E-14 3.7E-19 155.5 10.1 250 348-610 7-297 (310)
11 3pfi_A Holliday junction ATP-d 99.5 6.4E-14 2.2E-18 152.2 15.5 218 354-612 27-254 (338)
12 1um8_A ATP-dependent CLP prote 99.5 4.2E-14 1.4E-18 156.5 9.6 155 350-504 15-202 (376)
13 1ojl_A Transcriptional regulat 99.5 5.1E-14 1.7E-18 151.8 8.7 195 390-606 26-246 (304)
14 2bjv_A PSP operon transcriptio 99.4 2.7E-13 9.2E-18 142.4 11.4 207 356-592 6-240 (265)
15 3hws_A ATP-dependent CLP prote 99.4 1.1E-13 3.6E-18 152.5 3.1 135 351-485 10-162 (363)
16 1hqc_A RUVB; extended AAA-ATPa 99.4 2E-11 7E-16 131.2 19.7 219 356-612 12-238 (324)
17 1ny5_A Transcriptional regulat 99.3 1.2E-12 3.9E-17 145.9 9.3 198 390-608 161-383 (387)
18 4fcw_A Chaperone protein CLPB; 99.3 1.3E-12 4.4E-17 139.8 8.3 155 347-506 8-170 (311)
19 4b4t_J 26S protease regulatory 99.3 7.6E-12 2.6E-16 138.8 12.5 174 391-613 184-390 (405)
20 3h4m_A Proteasome-activating n 99.3 6.1E-12 2.1E-16 133.1 11.3 218 357-615 18-261 (285)
21 3dzd_A Transcriptional regulat 99.3 3E-12 1E-16 141.6 9.0 186 390-592 153-361 (368)
22 3syl_A Protein CBBX; photosynt 99.3 8.4E-12 2.9E-16 133.5 11.0 230 348-606 23-280 (309)
23 4b4t_L 26S protease subunit RP 99.3 2E-11 6.7E-16 137.3 12.7 176 391-615 217-425 (437)
24 4b4t_I 26S protease regulatory 99.2 9.1E-12 3.1E-16 138.7 9.4 180 391-616 218-427 (437)
25 1r6b_X CLPA protein; AAA+, N-t 99.2 2.3E-11 7.7E-16 146.7 13.4 150 347-507 449-609 (758)
26 4b4t_H 26S protease regulatory 99.2 2.9E-11 9.8E-16 135.9 12.2 179 391-615 245-453 (467)
27 3pvs_A Replication-associated 99.2 1.3E-11 4.3E-16 140.0 9.3 204 353-610 23-242 (447)
28 3uk6_A RUVB-like 2; hexameric 99.2 1.2E-10 4.2E-15 127.5 16.4 137 455-612 191-330 (368)
29 1in4_A RUVB, holliday junction 99.2 1.4E-10 4.9E-15 126.3 16.7 226 346-612 11-250 (334)
30 1lv7_A FTSH; alpha/beta domain 99.2 7.2E-11 2.4E-15 123.2 13.7 212 356-613 12-253 (257)
31 3vfd_A Spastin; ATPase, microt 99.2 6.2E-11 2.1E-15 131.8 13.2 219 356-615 115-368 (389)
32 2chg_A Replication factor C sm 99.2 6.5E-11 2.2E-15 118.5 12.1 203 354-610 15-224 (226)
33 3eie_A Vacuolar protein sortin 99.2 1.5E-11 5.1E-16 133.2 7.4 219 356-616 18-302 (322)
34 2qz4_A Paraplegin; AAA+, SPG7, 99.2 2.9E-11 1E-15 125.8 9.3 221 355-616 5-253 (262)
35 4b4t_M 26S protease regulatory 99.2 2.3E-11 7.8E-16 136.6 8.8 179 391-615 217-425 (434)
36 3d8b_A Fidgetin-like protein 1 99.2 1.5E-10 5.2E-15 127.2 14.9 219 356-616 84-338 (357)
37 4b4t_K 26S protease regulatory 99.2 7.5E-11 2.6E-15 132.3 12.4 176 391-611 208-413 (428)
38 3hu3_A Transitional endoplasmi 99.2 4.7E-11 1.6E-15 136.7 9.8 231 356-629 204-479 (489)
39 2c9o_A RUVB-like 1; hexameric 99.1 4.6E-10 1.6E-14 127.5 16.9 137 455-614 297-439 (456)
40 3b9p_A CG5977-PA, isoform A; A 99.1 2.7E-10 9.4E-15 121.2 12.6 221 356-615 21-275 (297)
41 2qp9_X Vacuolar protein sortin 99.1 9.8E-11 3.3E-15 128.8 9.2 197 355-593 50-269 (355)
42 2r62_A Cell division protease 99.1 2.9E-11 1E-15 126.8 4.5 212 356-611 11-252 (268)
43 3pxi_A Negative regulator of g 99.1 1.5E-10 5E-15 139.7 10.9 209 349-586 484-718 (758)
44 1xwi_A SKD1 protein; VPS4B, AA 99.1 3.7E-10 1.3E-14 122.5 12.4 196 356-592 12-230 (322)
45 3n70_A Transport activator; si 99.1 8.2E-11 2.8E-15 112.5 6.0 92 391-507 26-117 (145)
46 3co5_A Putative two-component 99.1 3.2E-11 1.1E-15 115.1 2.8 89 391-507 29-117 (143)
47 2ce7_A Cell division protein F 99.1 5.7E-10 1.9E-14 127.0 12.5 211 357-613 17-257 (476)
48 3m6a_A ATP-dependent protease 99.0 1.9E-10 6.4E-15 133.6 8.0 234 349-610 74-339 (543)
49 1g41_A Heat shock protein HSLU 99.0 1E-09 3.5E-14 123.5 12.9 67 350-418 9-79 (444)
50 1sxj_D Activator 1 41 kDa subu 99.0 2.1E-09 7.2E-14 116.6 13.7 209 353-610 34-261 (353)
51 3cf0_A Transitional endoplasmi 99.0 3.3E-10 1.1E-14 121.6 6.9 131 357-506 16-164 (301)
52 3vkg_A Dynein heavy chain, cyt 99.0 4.7E-09 1.6E-13 140.0 18.6 226 391-621 1306-1559(3245)
53 2dhr_A FTSH; AAA+ protein, hex 99.0 4E-09 1.4E-13 120.7 15.4 211 356-614 31-273 (499)
54 2zan_A Vacuolar protein sortin 99.0 1.2E-09 4E-14 123.7 10.6 197 356-592 134-352 (444)
55 1qvr_A CLPB protein; coiled co 98.9 1.7E-09 5.8E-14 132.0 10.7 144 354-505 556-710 (854)
56 2chq_A Replication factor C sm 98.9 4.1E-09 1.4E-13 112.3 11.7 201 354-609 15-223 (319)
57 1iqp_A RFCS; clamp loader, ext 98.9 2.5E-09 8.6E-14 114.5 9.7 208 347-609 16-231 (327)
58 4akg_A Glutathione S-transfera 98.9 4.4E-09 1.5E-13 139.6 13.2 227 391-621 1269-1521(2695)
59 1njg_A DNA polymerase III subu 98.9 3.2E-08 1.1E-12 99.9 15.8 209 354-610 21-249 (250)
60 3bos_A Putative DNA replicatio 98.8 3.3E-08 1.1E-12 100.6 15.4 176 391-610 54-241 (242)
61 2v1u_A Cell division control p 98.8 2.3E-08 7.8E-13 109.3 13.9 230 356-614 19-278 (387)
62 1ixz_A ATP-dependent metallopr 98.8 9.1E-09 3.1E-13 107.0 9.0 36 574-609 218-253 (254)
63 1sxj_C Activator 1 40 kDa subu 98.8 8.1E-09 2.8E-13 112.3 7.5 176 349-556 18-199 (340)
64 1d2n_A N-ethylmaleimide-sensit 98.7 1.2E-08 4E-13 107.4 8.4 166 391-590 66-247 (272)
65 1iy2_A ATP-dependent metallopr 98.7 1.8E-08 6.1E-13 106.5 9.1 35 575-609 243-277 (278)
66 1jr3_A DNA polymerase III subu 98.7 1.9E-07 6.4E-12 101.9 17.0 214 349-610 9-242 (373)
67 3u61_B DNA polymerase accessor 98.7 2.8E-08 9.5E-13 107.0 9.9 124 353-507 23-147 (324)
68 1fnn_A CDC6P, cell division co 98.7 3.7E-08 1.3E-12 108.0 10.9 233 356-612 17-274 (389)
69 4akg_A Glutathione S-transfera 98.7 9.1E-08 3.1E-12 127.1 16.0 187 391-595 647-843 (2695)
70 1r6b_X CLPA protein; AAA+, N-t 98.7 1.4E-07 4.7E-12 113.7 15.7 214 355-612 185-433 (758)
71 1sxj_B Activator 1 37 kDa subu 98.7 1.6E-07 5.3E-12 100.2 14.4 204 354-610 19-229 (323)
72 3cf2_A TER ATPase, transitiona 98.7 3.9E-09 1.3E-13 126.7 1.9 142 357-517 478-646 (806)
73 3cf2_A TER ATPase, transitiona 98.6 1.9E-08 6.4E-13 120.8 6.9 190 390-628 239-478 (806)
74 2qby_B CDC6 homolog 3, cell di 98.6 1.1E-07 3.6E-12 104.3 12.2 216 356-614 20-272 (384)
75 3pxg_A Negative regulator of g 98.6 1.8E-07 6E-12 106.6 12.9 200 355-598 179-391 (468)
76 2x8a_A Nuclear valosin-contain 98.6 1.9E-07 6.4E-12 98.9 11.6 216 357-616 11-268 (274)
77 1sxj_A Activator 1 95 kDa subu 98.6 8.1E-07 2.8E-11 102.3 16.9 217 356-612 39-274 (516)
78 3t15_A Ribulose bisphosphate c 98.5 3.6E-08 1.2E-12 105.3 4.4 112 387-506 34-165 (293)
79 2z4s_A Chromosomal replication 98.5 5.5E-07 1.9E-11 101.7 11.9 183 391-611 132-331 (440)
80 2qby_A CDC6 homolog 1, cell di 98.4 6.9E-07 2.4E-11 97.3 11.9 225 356-614 20-274 (386)
81 3pxi_A Negative regulator of g 98.4 1.4E-06 4.7E-11 105.0 15.0 199 355-597 179-390 (758)
82 1ypw_A Transitional endoplasmi 98.4 1.6E-08 5.6E-13 122.5 -3.7 132 356-506 477-626 (806)
83 1jbk_A CLPB protein; beta barr 98.4 2E-07 6.9E-12 90.6 4.6 54 348-413 14-67 (195)
84 2p65_A Hypothetical protein PF 98.3 8.7E-08 3E-12 93.2 1.4 52 350-413 16-67 (187)
85 1l8q_A Chromosomal replication 98.3 9.8E-07 3.4E-11 95.0 9.0 181 391-610 39-238 (324)
86 1sxj_E Activator 1 40 kDa subu 98.2 6E-06 2E-10 89.5 12.9 189 356-589 14-241 (354)
87 1qvr_A CLPB protein; coiled co 98.2 4E-06 1.4E-10 102.3 12.0 201 352-596 166-396 (854)
88 3vkg_A Dynein heavy chain, cyt 98.2 9.4E-06 3.2E-10 108.9 15.2 187 391-595 606-803 (3245)
89 3te6_A Regulatory protein SIR3 98.2 5.6E-06 1.9E-10 89.4 10.4 23 391-413 47-69 (318)
90 1ypw_A Transitional endoplasmi 98.0 1E-05 3.5E-10 98.1 9.6 132 356-507 204-351 (806)
91 1a5t_A Delta prime, HOLB; zinc 98.0 5.5E-05 1.9E-09 82.0 13.7 163 361-556 7-192 (334)
92 1w5s_A Origin recognition comp 97.9 3.1E-05 1E-09 85.4 9.6 228 355-611 21-292 (412)
93 2gno_A DNA polymerase III, gam 97.9 4E-05 1.4E-09 82.2 10.2 102 360-480 1-109 (305)
94 3ec2_A DNA replication protein 97.7 8.7E-06 3E-10 79.8 2.3 98 391-507 40-144 (180)
95 1tue_A Replication protein E1; 97.6 7E-05 2.4E-09 75.6 6.8 96 391-506 60-157 (212)
96 2kjq_A DNAA-related protein; s 97.5 9.1E-05 3.1E-09 70.9 5.7 68 391-479 38-109 (149)
97 1u0j_A DNA replication protein 97.2 0.00083 2.9E-08 70.4 9.7 95 391-506 106-200 (267)
98 2w58_A DNAI, primosome compone 97.2 6.8E-05 2.3E-09 74.6 1.1 24 391-414 56-79 (202)
99 2qgz_A Helicase loader, putati 97.2 6.9E-05 2.3E-09 80.5 0.8 24 391-414 154-177 (308)
100 1ye8_A Protein THEP1, hypothet 96.1 0.0013 4.5E-08 64.7 0.9 24 391-414 2-25 (178)
101 2orw_A Thymidine kinase; TMTK, 96.0 0.0066 2.3E-07 59.9 5.4 27 454-480 77-103 (184)
102 3upu_A ATP-dependent DNA helic 95.7 0.0097 3.3E-07 67.1 6.2 87 391-478 47-153 (459)
103 1w36_D RECD, exodeoxyribonucle 95.1 0.044 1.5E-06 64.2 9.0 37 361-412 151-187 (608)
104 2r2a_A Uncharacterized protein 94.9 0.023 7.7E-07 56.9 5.2 20 391-410 7-26 (199)
105 1jr3_D DNA polymerase III, del 94.8 0.11 3.8E-06 55.7 10.6 175 391-611 20-208 (343)
106 1kag_A SKI, shikimate kinase I 94.5 0.022 7.5E-07 54.5 3.7 28 391-418 6-33 (173)
107 1qhx_A CPT, protein (chloramph 94.4 0.024 8.2E-07 54.5 3.8 28 391-418 5-32 (178)
108 3e1s_A Exodeoxyribonuclease V, 94.3 0.028 9.7E-07 65.3 4.9 84 391-478 206-304 (574)
109 3trf_A Shikimate kinase, SK; a 94.0 0.027 9.2E-07 54.6 3.3 29 391-419 7-35 (185)
110 1via_A Shikimate kinase; struc 93.9 0.024 8.2E-07 54.6 2.6 29 391-419 6-34 (175)
111 3dl0_A Adenylate kinase; phosp 93.9 0.03 1E-06 55.8 3.4 29 391-419 2-30 (216)
112 3kb2_A SPBC2 prophage-derived 93.8 0.036 1.2E-06 52.6 3.6 28 391-418 3-30 (173)
113 1zuh_A Shikimate kinase; alpha 93.7 0.033 1.1E-06 53.2 3.3 29 391-419 9-37 (168)
114 3vaa_A Shikimate kinase, SK; s 93.7 0.037 1.3E-06 54.7 3.7 28 391-418 27-54 (199)
115 3lw7_A Adenylate kinase relate 93.4 0.039 1.3E-06 52.2 3.1 28 391-419 3-30 (179)
116 3iij_A Coilin-interacting nucl 93.3 0.034 1.2E-06 53.7 2.6 30 390-419 12-41 (180)
117 3fb4_A Adenylate kinase; psych 93.3 0.036 1.2E-06 55.1 2.8 28 391-418 2-29 (216)
118 2p5t_B PEZT; postsegregational 93.2 0.09 3.1E-06 54.1 5.7 26 390-415 33-58 (253)
119 1ly1_A Polynucleotide kinase; 93.1 0.043 1.5E-06 52.5 3.0 21 391-411 4-24 (181)
120 3tr0_A Guanylate kinase, GMP k 93.0 0.064 2.2E-06 52.7 4.1 24 391-414 9-32 (205)
121 3jvv_A Twitching mobility prot 93.0 0.082 2.8E-06 57.7 5.3 25 391-415 125-149 (356)
122 3cm0_A Adenylate kinase; ATP-b 92.9 0.043 1.5E-06 53.1 2.6 28 391-418 6-33 (186)
123 1y63_A LMAJ004144AAA protein; 92.9 0.059 2E-06 52.5 3.6 29 391-419 12-41 (184)
124 2iyv_A Shikimate kinase, SK; t 92.9 0.051 1.7E-06 52.6 3.1 29 391-419 4-32 (184)
125 3sr0_A Adenylate kinase; phosp 92.9 0.045 1.5E-06 55.0 2.8 29 391-419 2-30 (206)
126 1gvn_B Zeta; postsegregational 92.8 0.13 4.3E-06 54.3 6.3 24 391-414 35-58 (287)
127 3clv_A RAB5 protein, putative; 92.8 0.067 2.3E-06 51.5 3.9 29 384-412 2-30 (208)
128 1aky_A Adenylate kinase; ATP:A 92.6 0.054 1.9E-06 54.2 3.0 29 390-418 5-33 (220)
129 3t61_A Gluconokinase; PSI-biol 92.6 0.061 2.1E-06 53.0 3.3 28 391-418 20-47 (202)
130 1e6c_A Shikimate kinase; phosp 92.6 0.059 2E-06 51.3 3.1 29 391-419 4-32 (173)
131 2b8t_A Thymidine kinase; deoxy 92.6 0.2 6.9E-06 50.9 7.1 28 384-412 8-35 (223)
132 2vli_A Antibiotic resistance p 92.5 0.059 2E-06 51.9 3.0 28 391-418 7-34 (183)
133 2bdt_A BH3686; alpha-beta prot 92.5 0.065 2.2E-06 52.1 3.3 28 391-418 4-31 (189)
134 1cke_A CK, MSSA, protein (cyti 92.5 0.055 1.9E-06 54.1 2.8 31 391-421 7-37 (227)
135 2cdn_A Adenylate kinase; phosp 92.5 0.069 2.3E-06 52.6 3.5 29 391-419 22-50 (201)
136 1zp6_A Hypothetical protein AT 92.5 0.059 2E-06 52.3 3.0 23 391-413 11-33 (191)
137 2qen_A Walker-type ATPase; unk 92.4 0.097 3.3E-06 55.4 4.9 48 357-419 13-60 (350)
138 1knq_A Gluconate kinase; ALFA/ 92.4 0.066 2.2E-06 51.4 3.2 25 391-415 10-34 (175)
139 1tev_A UMP-CMP kinase; ploop, 92.4 0.055 1.9E-06 52.4 2.7 28 391-418 5-32 (196)
140 2pt5_A Shikimate kinase, SK; a 92.4 0.068 2.3E-06 50.7 3.2 29 391-419 2-30 (168)
141 1kgd_A CASK, peripheral plasma 92.4 0.068 2.3E-06 51.9 3.2 25 391-415 7-31 (180)
142 1htw_A HI0065; nucleotide-bind 92.3 0.077 2.6E-06 51.0 3.5 24 391-414 35-58 (158)
143 2rhm_A Putative kinase; P-loop 92.3 0.06 2E-06 52.2 2.8 28 391-418 7-34 (193)
144 3tqc_A Pantothenate kinase; bi 92.3 0.062 2.1E-06 57.8 3.1 80 326-414 32-117 (321)
145 4eun_A Thermoresistant glucoki 92.3 0.066 2.3E-06 52.8 3.1 25 391-415 31-55 (200)
146 2ze6_A Isopentenyl transferase 92.2 0.08 2.7E-06 54.7 3.7 29 391-419 3-31 (253)
147 1e4v_A Adenylate kinase; trans 92.1 0.056 1.9E-06 53.9 2.3 28 391-418 2-29 (214)
148 2c95_A Adenylate kinase 1; tra 92.1 0.055 1.9E-06 52.6 2.2 28 391-418 11-38 (196)
149 1upt_A ARL1, ADP-ribosylation 91.9 0.095 3.3E-06 49.2 3.6 26 386-411 4-29 (171)
150 2jaq_A Deoxyguanosine kinase; 91.9 0.082 2.8E-06 51.6 3.3 25 391-415 2-26 (205)
151 1ak2_A Adenylate kinase isoenz 91.9 0.07 2.4E-06 54.1 2.8 29 390-418 17-45 (233)
152 1zd8_A GTP:AMP phosphotransfer 91.9 0.073 2.5E-06 53.6 2.9 28 391-418 9-36 (227)
153 2j41_A Guanylate kinase; GMP, 91.9 0.091 3.1E-06 51.5 3.5 23 391-413 8-30 (207)
154 2qor_A Guanylate kinase; phosp 91.8 0.083 2.8E-06 52.3 3.2 25 391-415 14-38 (204)
155 3tlx_A Adenylate kinase 2; str 91.8 0.077 2.6E-06 54.4 3.0 29 391-419 31-59 (243)
156 1kht_A Adenylate kinase; phosp 91.7 0.08 2.7E-06 51.1 2.9 24 391-414 5-28 (192)
157 2bwj_A Adenylate kinase 5; pho 91.7 0.062 2.1E-06 52.4 2.1 28 391-418 14-41 (199)
158 2bbw_A Adenylate kinase 4, AK4 91.7 0.069 2.3E-06 54.6 2.5 23 391-413 29-51 (246)
159 3nwj_A ATSK2; P loop, shikimat 91.7 0.085 2.9E-06 54.6 3.2 29 391-419 50-78 (250)
160 1ukz_A Uridylate kinase; trans 91.6 0.092 3.1E-06 51.6 3.2 29 391-419 17-45 (203)
161 1nks_A Adenylate kinase; therm 91.6 0.073 2.5E-06 51.4 2.4 24 391-414 3-26 (194)
162 1qf9_A UMP/CMP kinase, protein 91.5 0.079 2.7E-06 51.2 2.6 28 391-418 8-35 (194)
163 3umf_A Adenylate kinase; rossm 91.5 0.076 2.6E-06 53.9 2.5 28 391-418 31-58 (217)
164 3be4_A Adenylate kinase; malar 91.4 0.072 2.5E-06 53.3 2.3 29 390-418 6-34 (217)
165 3q85_A GTP-binding protein REM 91.4 0.099 3.4E-06 49.0 3.1 23 389-411 2-24 (169)
166 3tau_A Guanylate kinase, GMP k 91.4 0.096 3.3E-06 52.2 3.2 25 391-415 10-34 (208)
167 2xb4_A Adenylate kinase; ATP-b 91.4 0.099 3.4E-06 52.7 3.2 28 391-418 2-29 (223)
168 3vkw_A Replicase large subunit 91.3 0.087 3E-06 59.0 2.9 85 392-477 164-258 (446)
169 2plr_A DTMP kinase, probable t 91.2 0.089 3.1E-06 51.7 2.7 25 391-415 6-30 (213)
170 2gza_A Type IV secretion syste 91.2 0.13 4.5E-06 56.1 4.2 25 391-415 177-201 (361)
171 1zak_A Adenylate kinase; ATP:A 91.0 0.071 2.4E-06 53.4 1.7 26 391-416 7-32 (222)
172 3uie_A Adenylyl-sulfate kinase 91.0 0.091 3.1E-06 51.8 2.5 24 391-414 27-50 (200)
173 1kao_A RAP2A; GTP-binding prot 90.8 0.13 4.4E-06 47.7 3.2 24 389-412 3-26 (167)
174 2ewv_A Twitching motility prot 90.8 0.22 7.5E-06 54.5 5.5 25 391-415 138-162 (372)
175 3t1o_A Gliding protein MGLA; G 90.7 0.14 4.9E-06 49.1 3.6 28 388-415 13-40 (198)
176 3a00_A Guanylate kinase, GMP k 90.7 0.11 3.8E-06 50.6 2.8 24 392-415 4-27 (186)
177 1z2a_A RAS-related protein RAB 90.6 0.14 4.7E-06 47.8 3.2 24 389-412 5-28 (168)
178 2fz4_A DNA repair protein RAD2 90.6 0.59 2E-05 47.5 8.2 24 391-414 110-133 (237)
179 1ex7_A Guanylate kinase; subst 90.5 0.19 6.4E-06 49.7 4.3 27 391-417 3-29 (186)
180 2if2_A Dephospho-COA kinase; a 90.5 0.14 4.8E-06 50.3 3.3 27 391-418 3-29 (204)
181 3lxx_A GTPase IMAP family memb 90.4 0.34 1.2E-05 48.9 6.2 26 388-413 28-53 (239)
182 1znw_A Guanylate kinase, GMP k 90.4 0.14 4.7E-06 50.8 3.2 24 391-414 22-45 (207)
183 4a74_A DNA repair and recombin 90.4 0.15 5.2E-06 50.6 3.6 23 391-413 27-49 (231)
184 1jjv_A Dephospho-COA kinase; P 90.4 0.18 6E-06 49.7 3.9 26 391-417 4-29 (206)
185 2erx_A GTP-binding protein DI- 90.4 0.15 5.2E-06 47.6 3.3 24 389-412 3-26 (172)
186 1ek0_A Protein (GTP-binding pr 90.4 0.15 5E-06 47.6 3.2 23 390-412 4-26 (170)
187 1z0j_A RAB-22, RAS-related pro 90.3 0.15 5.2E-06 47.6 3.3 24 389-412 6-29 (170)
188 1ky3_A GTP-binding protein YPT 90.3 0.15 5.3E-06 48.2 3.3 25 388-412 7-31 (182)
189 1lvg_A Guanylate kinase, GMP k 90.3 0.12 4.2E-06 51.1 2.7 24 391-414 6-29 (198)
190 2nzj_A GTP-binding protein REM 90.3 0.15 5E-06 48.1 3.1 23 390-412 5-27 (175)
191 4e22_A Cytidylate kinase; P-lo 90.3 0.14 4.8E-06 52.7 3.2 32 391-422 29-60 (252)
192 3r20_A Cytidylate kinase; stru 90.2 0.13 4.3E-06 52.8 2.8 31 390-420 10-40 (233)
193 1z08_A RAS-related protein RAB 90.1 0.16 5.4E-06 47.6 3.2 24 389-412 6-29 (170)
194 1u8z_A RAS-related protein RAL 90.1 0.16 5.5E-06 47.1 3.2 24 389-412 4-27 (168)
195 1c1y_A RAS-related protein RAP 90.1 0.16 5.5E-06 47.3 3.2 23 390-412 4-26 (167)
196 3oes_A GTPase rhebl1; small GT 90.0 0.14 4.7E-06 50.1 2.8 32 381-412 16-47 (201)
197 2oap_1 GSPE-2, type II secreti 90.0 0.23 8E-06 56.7 5.1 25 391-415 262-286 (511)
198 3ney_A 55 kDa erythrocyte memb 90.0 0.21 7.2E-06 49.8 4.1 25 391-415 21-45 (197)
199 1wms_A RAB-9, RAB9, RAS-relate 90.0 0.17 5.8E-06 47.8 3.3 24 389-412 7-30 (177)
200 3sop_A Neuronal-specific septi 89.8 0.12 4.2E-06 54.0 2.4 27 389-415 2-28 (270)
201 1r8s_A ADP-ribosylation factor 89.8 0.17 5.7E-06 47.2 3.1 23 390-412 1-23 (164)
202 1z6g_A Guanylate kinase; struc 89.8 0.17 5.6E-06 51.0 3.2 24 391-414 25-48 (218)
203 1r2q_A RAS-related protein RAB 89.8 0.18 6E-06 47.1 3.2 24 389-412 6-29 (170)
204 3b85_A Phosphate starvation-in 89.8 0.18 6.3E-06 50.5 3.5 22 391-412 24-45 (208)
205 2hxs_A RAB-26, RAS-related pro 89.8 0.18 6.2E-06 47.6 3.3 24 389-412 6-29 (178)
206 2f9l_A RAB11B, member RAS onco 89.8 0.17 5.7E-06 49.4 3.2 24 390-413 6-29 (199)
207 2zej_A Dardarin, leucine-rich 89.7 0.15 5E-06 49.2 2.7 23 390-412 3-25 (184)
208 2ce2_X GTPase HRAS; signaling 89.7 0.15 5.2E-06 47.1 2.7 23 390-412 4-26 (166)
209 3bc1_A RAS-related protein RAB 89.7 0.18 6E-06 48.2 3.2 24 389-412 11-34 (195)
210 2z0h_A DTMP kinase, thymidylat 89.7 0.18 6E-06 49.0 3.2 23 391-413 2-24 (197)
211 2vhj_A Ntpase P4, P4; non- hyd 89.7 0.16 5.4E-06 54.6 3.1 22 391-412 125-146 (331)
212 3c8u_A Fructokinase; YP_612366 89.7 0.14 5E-06 50.7 2.6 24 391-414 24-47 (208)
213 1zd9_A ADP-ribosylation factor 89.6 0.18 6.1E-06 48.7 3.2 29 384-412 17-45 (188)
214 1g16_A RAS-related protein SEC 89.6 0.16 5.3E-06 47.5 2.7 23 390-412 4-26 (170)
215 2v54_A DTMP kinase, thymidylat 89.6 0.18 6.3E-06 49.2 3.3 23 391-413 6-28 (204)
216 2pbr_A DTMP kinase, thymidylat 89.5 0.16 5.6E-06 49.0 2.9 23 391-413 2-24 (195)
217 4gp7_A Metallophosphoesterase; 89.5 0.14 4.9E-06 49.3 2.4 20 391-410 11-30 (171)
218 2v9p_A Replication protein E1; 89.5 0.21 7E-06 53.3 3.8 23 391-413 128-150 (305)
219 3a4m_A L-seryl-tRNA(SEC) kinas 89.4 0.17 5.7E-06 52.3 3.0 22 391-412 6-27 (260)
220 1z0f_A RAB14, member RAS oncog 89.3 0.2 6.7E-06 47.3 3.2 24 389-412 15-38 (179)
221 1s96_A Guanylate kinase, GMP k 89.3 0.19 6.6E-06 50.8 3.3 25 391-415 18-42 (219)
222 3ake_A Cytidylate kinase; CMP 89.2 0.16 5.6E-06 49.7 2.6 30 391-420 4-33 (208)
223 3lxw_A GTPase IMAP family memb 89.2 0.47 1.6E-05 48.6 6.2 26 387-412 19-44 (247)
224 3tw8_B RAS-related protein RAB 89.2 0.17 6E-06 47.7 2.7 25 388-412 8-32 (181)
225 3q72_A GTP-binding protein RAD 89.2 0.16 5.3E-06 47.5 2.3 22 390-411 3-24 (166)
226 2dyk_A GTP-binding protein; GT 89.1 0.22 7.4E-06 46.1 3.3 22 391-412 3-24 (161)
227 2yvu_A Probable adenylyl-sulfa 89.0 0.2 6.9E-06 48.5 3.1 25 390-414 14-38 (186)
228 2r8r_A Sensor protein; KDPD, P 89.0 0.22 7.5E-06 50.8 3.4 27 386-412 3-29 (228)
229 2iwr_A Centaurin gamma 1; ANK 89.0 0.2 6.7E-06 47.5 3.0 24 389-412 7-30 (178)
230 2ehv_A Hypothetical protein PH 89.0 0.18 6.3E-06 50.7 2.9 23 388-411 30-52 (251)
231 2wji_A Ferrous iron transport 89.0 0.21 7.1E-06 47.2 3.1 23 390-412 4-26 (165)
232 2oil_A CATX-8, RAS-related pro 89.0 0.21 7.2E-06 48.2 3.2 24 389-412 25-48 (193)
233 3tif_A Uncharacterized ABC tra 88.9 0.2 6.7E-06 51.3 3.0 25 391-415 33-57 (235)
234 2gf0_A GTP-binding protein DI- 88.9 0.2 6.9E-06 48.3 3.0 25 388-412 7-31 (199)
235 1m7b_A RND3/RHOE small GTP-bin 88.9 0.19 6.4E-06 48.3 2.8 24 389-412 7-30 (184)
236 1nrj_B SR-beta, signal recogni 88.9 0.22 7.5E-06 49.2 3.3 26 388-413 11-36 (218)
237 3crm_A TRNA delta(2)-isopenten 88.9 0.31 1.1E-05 52.3 4.7 29 391-419 7-35 (323)
238 4dsu_A GTPase KRAS, isoform 2B 88.9 0.22 7.5E-06 47.4 3.2 24 389-412 4-27 (189)
239 2g6b_A RAS-related protein RAB 88.9 0.22 7.6E-06 47.1 3.2 25 388-412 9-33 (180)
240 2ged_A SR-beta, signal recogni 88.9 0.23 7.8E-06 47.8 3.4 26 388-413 47-72 (193)
241 2pt7_A CAG-ALFA; ATPase, prote 88.8 0.27 9.2E-06 52.9 4.2 25 391-415 173-197 (330)
242 2wwf_A Thymidilate kinase, put 88.8 0.17 5.7E-06 49.9 2.4 24 391-414 12-35 (212)
243 2fna_A Conserved hypothetical 88.8 0.25 8.6E-06 52.3 4.0 43 356-414 13-55 (357)
244 2efe_B Small GTP-binding prote 88.8 0.23 7.8E-06 47.0 3.2 24 389-412 12-35 (181)
245 2onk_A Molybdate/tungstate ABC 88.7 0.22 7.6E-06 51.1 3.3 25 391-415 26-50 (240)
246 2ga8_A Hypothetical 39.9 kDa p 88.7 0.27 9.1E-06 53.6 4.0 27 391-417 26-52 (359)
247 3kkq_A RAS-related protein M-R 88.7 0.23 7.8E-06 47.3 3.2 24 389-412 18-41 (183)
248 2qt1_A Nicotinamide riboside k 88.7 0.28 9.7E-06 48.3 4.0 24 391-414 23-46 (207)
249 2pcj_A ABC transporter, lipopr 88.7 0.18 6.2E-06 51.1 2.5 25 391-415 32-56 (224)
250 1mh1_A RAC1; GTP-binding, GTPa 88.6 0.23 7.9E-06 47.1 3.2 24 389-412 5-28 (186)
251 3cph_A RAS-related protein SEC 88.6 0.23 8E-06 48.5 3.3 28 385-412 16-43 (213)
252 1ksh_A ARF-like protein 2; sma 88.5 0.23 8E-06 47.5 3.1 25 388-412 17-41 (186)
253 2bov_A RAla, RAS-related prote 88.5 0.25 8.7E-06 47.9 3.5 26 387-412 12-37 (206)
254 2y8e_A RAB-protein 6, GH09086P 88.5 0.2 7E-06 47.1 2.7 22 390-411 15-36 (179)
255 2lkc_A Translation initiation 88.4 0.26 8.9E-06 46.5 3.4 24 389-412 8-31 (178)
256 3ihw_A Centg3; RAS, centaurin, 88.4 0.24 8.3E-06 47.8 3.2 25 387-411 18-42 (184)
257 2w0m_A SSO2452; RECA, SSPF, un 88.4 0.22 7.5E-06 49.4 2.9 22 391-412 25-46 (235)
258 3asz_A Uridine kinase; cytidin 88.4 0.15 5.3E-06 50.3 1.8 24 391-414 8-31 (211)
259 2fn4_A P23, RAS-related protei 88.4 0.22 7.4E-06 47.0 2.8 24 389-412 9-32 (181)
260 3con_A GTPase NRAS; structural 88.3 0.25 8.6E-06 47.4 3.2 24 389-412 21-44 (190)
261 1ltq_A Polynucleotide kinase; 88.3 0.29 1E-05 51.2 3.9 23 391-413 4-26 (301)
262 1sgw_A Putative ABC transporte 88.2 0.24 8.3E-06 49.9 3.1 25 391-415 37-61 (214)
263 1nn5_A Similar to deoxythymidy 88.2 0.22 7.6E-06 49.0 2.8 24 391-414 11-34 (215)
264 1oix_A RAS-related protein RAB 88.2 0.22 7.6E-06 48.4 2.8 25 390-414 30-54 (191)
265 2a9k_A RAS-related protein RAL 88.2 0.26 9E-06 46.7 3.2 24 389-412 18-41 (187)
266 2atv_A RERG, RAS-like estrogen 88.1 0.27 9.2E-06 47.7 3.3 24 389-412 28-51 (196)
267 3c5c_A RAS-like protein 12; GD 88.1 0.27 9.1E-06 47.5 3.3 25 388-412 20-44 (187)
268 1b0u_A Histidine permease; ABC 88.1 0.24 8.2E-06 51.5 3.1 25 391-415 34-58 (262)
269 2gf9_A RAS-related protein RAB 88.1 0.27 9.1E-06 47.3 3.2 24 389-412 22-45 (189)
270 1uf9_A TT1252 protein; P-loop, 88.0 0.3 1E-05 47.5 3.7 28 390-418 9-36 (203)
271 2gj8_A MNME, tRNA modification 88.0 0.23 7.9E-06 47.4 2.7 23 390-412 5-27 (172)
272 3lnc_A Guanylate kinase, GMP k 88.0 0.17 5.9E-06 50.9 1.9 25 391-415 29-54 (231)
273 3bwd_D RAC-like GTP-binding pr 88.0 0.27 9.1E-06 46.6 3.1 24 389-412 8-31 (182)
274 1g6h_A High-affinity branched- 87.9 0.24 8.4E-06 51.2 3.0 25 391-415 35-59 (257)
275 3reg_A RHO-like small GTPase; 87.9 0.27 9.3E-06 47.5 3.2 25 388-412 22-46 (194)
276 1zbd_A Rabphilin-3A; G protein 87.9 0.27 9.2E-06 47.8 3.2 23 390-412 9-31 (203)
277 3tkl_A RAS-related protein RAB 87.9 0.27 9.4E-06 47.2 3.2 25 388-412 15-39 (196)
278 2pez_A Bifunctional 3'-phospho 87.9 0.25 8.7E-06 47.4 3.0 23 391-413 7-29 (179)
279 1uj2_A Uridine-cytidine kinase 87.9 0.29 9.8E-06 50.2 3.5 27 390-416 23-49 (252)
280 2xtp_A GTPase IMAP family memb 87.9 0.52 1.8E-05 48.1 5.5 25 388-412 21-45 (260)
281 1z06_A RAS-related protein RAB 87.8 0.28 9.7E-06 47.1 3.3 24 388-411 19-42 (189)
282 2cxx_A Probable GTP-binding pr 87.8 0.2 7E-06 47.8 2.2 23 390-412 2-24 (190)
283 1svm_A Large T antigen; AAA+ f 87.8 0.32 1.1E-05 53.4 4.0 24 391-414 171-194 (377)
284 2cvh_A DNA repair and recombin 87.8 0.25 8.5E-06 48.7 2.9 21 391-411 22-42 (220)
285 2bme_A RAB4A, RAS-related prot 87.8 0.24 8.3E-06 47.2 2.7 24 389-412 10-33 (186)
286 1n0w_A DNA repair protein RAD5 87.8 0.25 8.4E-06 49.6 2.9 22 391-412 26-47 (243)
287 2cbz_A Multidrug resistance-as 87.7 0.21 7E-06 51.1 2.3 24 391-414 33-56 (237)
288 2ff7_A Alpha-hemolysin translo 87.7 0.26 8.8E-06 50.8 3.0 25 391-415 37-61 (247)
289 3a8t_A Adenylate isopentenyltr 87.7 0.49 1.7E-05 51.1 5.3 30 391-420 42-71 (339)
290 1x3s_A RAS-related protein RAB 87.7 0.29 1E-05 46.9 3.2 24 389-412 15-38 (195)
291 3q3j_B RHO-related GTP-binding 87.7 0.29 9.9E-06 48.6 3.3 28 385-412 23-50 (214)
292 1mv5_A LMRA, multidrug resista 87.6 0.27 9.1E-06 50.4 3.1 25 391-415 30-54 (243)
293 2pze_A Cystic fibrosis transme 87.6 0.27 9.3E-06 49.9 3.1 25 391-415 36-60 (229)
294 1vg8_A RAS-related protein RAB 87.6 0.3 1E-05 47.5 3.3 25 388-412 7-31 (207)
295 1m7g_A Adenylylsulfate kinase; 87.5 0.19 6.6E-06 49.9 1.9 24 391-414 27-50 (211)
296 2wjg_A FEOB, ferrous iron tran 87.5 0.35 1.2E-05 46.2 3.7 24 389-412 7-30 (188)
297 3gfo_A Cobalt import ATP-bindi 87.5 0.27 9.3E-06 51.5 3.1 25 391-415 36-60 (275)
298 1ji0_A ABC transporter; ATP bi 87.5 0.27 9.4E-06 50.3 3.0 25 391-415 34-58 (240)
299 1svi_A GTP-binding protein YSX 87.5 0.25 8.4E-06 47.6 2.6 25 388-412 22-46 (195)
300 2a5j_A RAS-related protein RAB 87.5 0.3 1E-05 47.1 3.2 24 389-412 21-44 (191)
301 2olj_A Amino acid ABC transpor 87.4 0.28 9.5E-06 51.1 3.1 25 391-415 52-76 (263)
302 2fg5_A RAB-22B, RAS-related pr 87.4 0.26 9E-06 47.6 2.8 24 389-412 23-46 (192)
303 2qi9_C Vitamin B12 import ATP- 87.4 0.28 9.7E-06 50.6 3.1 25 391-415 28-52 (249)
304 2h92_A Cytidylate kinase; ross 87.3 0.31 1.1E-05 48.4 3.2 30 391-420 5-34 (219)
305 4b3f_X DNA-binding protein smu 87.2 0.46 1.6E-05 55.8 5.2 38 361-412 191-229 (646)
306 3t5g_A GTP-binding protein RHE 87.2 0.27 9.1E-06 46.7 2.6 23 389-411 6-28 (181)
307 2p5s_A RAS and EF-hand domain 87.2 0.31 1.1E-05 47.4 3.2 25 388-412 27-51 (199)
308 1zj6_A ADP-ribosylation factor 87.2 0.29 1E-05 46.9 2.9 22 390-411 17-38 (187)
309 2q3h_A RAS homolog gene family 87.2 0.31 1.1E-05 47.3 3.1 28 385-412 16-43 (201)
310 3dz8_A RAS-related protein RAB 87.2 0.27 9.3E-06 47.4 2.7 26 388-413 22-47 (191)
311 2ixe_A Antigen peptide transpo 87.2 0.29 9.8E-06 51.2 3.0 25 391-415 47-71 (271)
312 1vht_A Dephospho-COA kinase; s 87.1 0.4 1.4E-05 47.6 3.9 28 390-418 5-32 (218)
313 2fu5_C RAS-related protein RAB 87.0 0.21 7.3E-06 47.5 1.8 23 389-411 8-30 (183)
314 1vpl_A ABC transporter, ATP-bi 87.0 0.3 1E-05 50.6 3.1 25 391-415 43-67 (256)
315 2ihy_A ABC transporter, ATP-bi 87.0 0.3 1E-05 51.3 3.1 25 391-415 49-73 (279)
316 2i3b_A HCR-ntpase, human cance 87.0 0.31 1.1E-05 48.1 3.0 23 391-413 3-25 (189)
317 4g1u_C Hemin import ATP-bindin 86.9 0.3 1E-05 50.9 3.0 25 391-415 39-63 (266)
318 1fzq_A ADP-ribosylation factor 86.8 0.27 9.3E-06 47.2 2.4 24 389-412 16-39 (181)
319 1q3t_A Cytidylate kinase; nucl 86.8 0.29 1E-05 49.5 2.8 31 391-421 18-48 (236)
320 2bcg_Y Protein YP2, GTP-bindin 86.7 0.3 1E-05 47.7 2.7 24 389-412 8-31 (206)
321 2nq2_C Hypothetical ABC transp 86.7 0.32 1.1E-05 50.2 3.1 25 391-415 33-57 (253)
322 2f7s_A C25KG, RAS-related prot 86.7 0.33 1.1E-05 47.8 3.1 24 389-412 25-48 (217)
323 2cjw_A GTP-binding protein GEM 86.6 0.36 1.2E-05 47.0 3.2 22 390-411 7-28 (192)
324 2grj_A Dephospho-COA kinase; T 86.6 0.36 1.2E-05 47.7 3.2 29 391-419 14-42 (192)
325 1w4r_A Thymidine kinase; type 86.5 0.5 1.7E-05 47.0 4.2 27 385-412 17-44 (195)
326 2il1_A RAB12; G-protein, GDP, 86.5 0.34 1.2E-05 46.9 3.0 24 389-412 26-49 (192)
327 1moz_A ARL1, ADP-ribosylation 86.5 0.24 8.1E-06 47.1 1.8 23 389-411 18-40 (183)
328 2yz2_A Putative ABC transporte 86.5 0.33 1.1E-05 50.5 3.0 25 391-415 35-59 (266)
329 3pqc_A Probable GTP-binding pr 86.4 0.36 1.2E-05 46.1 3.1 26 387-412 21-46 (195)
330 2eyu_A Twitching motility prot 86.3 0.33 1.1E-05 50.4 3.0 24 391-414 27-50 (261)
331 2fh5_B SR-beta, signal recogni 86.2 0.36 1.2E-05 47.4 3.1 24 389-412 7-30 (214)
332 2h17_A ADP-ribosylation factor 86.2 0.28 9.7E-06 46.8 2.2 25 388-412 20-44 (181)
333 2b6h_A ADP-ribosylation factor 86.2 0.33 1.1E-05 47.1 2.8 24 388-411 28-51 (192)
334 2o52_A RAS-related protein RAB 86.2 0.31 1.1E-05 47.6 2.5 24 389-412 25-48 (200)
335 3kta_A Chromosome segregation 86.0 0.36 1.2E-05 46.4 2.8 24 392-415 29-52 (182)
336 3cbq_A GTP-binding protein REM 86.0 0.32 1.1E-05 47.5 2.5 24 388-411 22-45 (195)
337 1gwn_A RHO-related GTP-binding 85.9 0.35 1.2E-05 47.8 2.7 24 389-412 28-51 (205)
338 3d31_A Sulfate/molybdate ABC t 85.9 0.39 1.3E-05 52.2 3.3 25 391-415 28-52 (348)
339 2ew1_A RAS-related protein RAB 85.9 0.35 1.2E-05 47.6 2.7 24 389-412 26-49 (201)
340 3e2i_A Thymidine kinase; Zn-bi 85.9 1.3 4.5E-05 44.7 6.9 90 385-481 25-129 (219)
341 2ghi_A Transport protein; mult 85.8 0.36 1.2E-05 50.0 2.9 24 391-414 48-71 (260)
342 1gtv_A TMK, thymidylate kinase 85.8 0.22 7.4E-06 49.1 1.2 24 391-414 2-25 (214)
343 3llu_A RAS-related GTP-binding 85.8 0.32 1.1E-05 47.2 2.4 26 388-413 19-44 (196)
344 1lw7_A Transcriptional regulat 85.8 0.43 1.5E-05 51.8 3.6 25 391-415 172-196 (365)
345 1z47_A CYSA, putative ABC-tran 85.7 0.4 1.4E-05 52.2 3.3 25 391-415 43-67 (355)
346 1m2o_B GTP-binding protein SAR 85.7 0.34 1.2E-05 46.9 2.5 23 390-412 24-46 (190)
347 2yyz_A Sugar ABC transporter, 85.6 0.4 1.4E-05 52.2 3.3 25 391-415 31-55 (359)
348 2atx_A Small GTP binding prote 85.4 0.39 1.3E-05 46.3 2.8 25 388-412 17-41 (194)
349 2it1_A 362AA long hypothetical 85.4 0.42 1.4E-05 52.2 3.3 25 391-415 31-55 (362)
350 3rlf_A Maltose/maltodextrin im 85.4 0.42 1.4E-05 52.5 3.3 25 391-415 31-55 (381)
351 2j1l_A RHO-related GTP-binding 85.4 0.37 1.3E-05 47.7 2.6 23 389-411 34-56 (214)
352 3foz_A TRNA delta(2)-isopenten 85.3 0.71 2.4E-05 49.3 4.9 28 391-418 12-39 (316)
353 2h57_A ADP-ribosylation factor 85.3 0.28 9.7E-06 47.2 1.7 25 388-412 20-44 (190)
354 3aez_A Pantothenate kinase; tr 85.3 0.3 1E-05 52.1 2.0 25 391-415 92-116 (312)
355 3fvq_A Fe(3+) IONS import ATP- 85.3 0.37 1.3E-05 52.5 2.7 25 391-415 32-56 (359)
356 2hup_A RAS-related protein RAB 85.2 0.4 1.4E-05 46.9 2.8 24 389-412 29-52 (201)
357 2gco_A H9, RHO-related GTP-bin 85.2 0.39 1.3E-05 46.8 2.7 24 389-412 25-48 (201)
358 1pzn_A RAD51, DNA repair and r 85.2 0.47 1.6E-05 51.4 3.6 23 391-413 133-155 (349)
359 1oxx_K GLCV, glucose, ABC tran 85.2 0.39 1.3E-05 52.2 2.9 25 391-415 33-57 (353)
360 1v43_A Sugar-binding transport 85.2 0.44 1.5E-05 52.2 3.3 25 391-415 39-63 (372)
361 2fv8_A H6, RHO-related GTP-bin 85.2 0.4 1.4E-05 47.0 2.7 24 389-412 25-48 (207)
362 4gzl_A RAS-related C3 botulinu 85.1 0.41 1.4E-05 47.0 2.8 24 389-412 30-53 (204)
363 1g29_1 MALK, maltose transport 85.0 0.45 1.5E-05 52.1 3.3 25 391-415 31-55 (372)
364 4eaq_A DTMP kinase, thymidylat 85.0 0.39 1.3E-05 48.7 2.6 24 391-414 28-51 (229)
365 3k53_A Ferrous iron transport 84.9 0.4 1.4E-05 49.7 2.7 23 390-412 4-26 (271)
366 2j0v_A RAC-like GTP-binding pr 84.9 0.5 1.7E-05 46.3 3.3 25 388-412 8-32 (212)
367 3cpj_B GTP-binding protein YPT 84.9 0.48 1.6E-05 47.1 3.2 24 389-412 13-36 (223)
368 2qmh_A HPR kinase/phosphorylas 84.8 0.56 1.9E-05 46.9 3.6 24 391-414 36-59 (205)
369 2dr3_A UPF0273 protein PH0284; 84.6 0.39 1.3E-05 48.1 2.4 21 391-411 25-45 (247)
370 2zts_A Putative uncharacterize 84.5 0.55 1.9E-05 47.1 3.5 20 391-410 32-51 (251)
371 3exa_A TRNA delta(2)-isopenten 84.4 0.72 2.5E-05 49.3 4.4 28 391-418 5-32 (322)
372 1cr0_A DNA primase/helicase; R 84.4 0.39 1.3E-05 50.2 2.4 23 391-413 37-59 (296)
373 1z6t_A APAF-1, apoptotic prote 84.4 0.83 2.8E-05 52.5 5.4 47 355-411 123-169 (591)
374 4bas_A ADP-ribosylation factor 84.4 0.46 1.6E-05 45.8 2.7 25 388-412 16-40 (199)
375 3zvl_A Bifunctional polynucleo 84.3 0.48 1.6E-05 52.6 3.2 24 391-414 260-283 (416)
376 3a1s_A Iron(II) transport prot 84.3 0.52 1.8E-05 48.7 3.2 24 389-412 5-28 (258)
377 1pui_A ENGB, probable GTP-bind 84.3 0.28 9.5E-06 48.0 1.1 24 390-413 27-50 (210)
378 2qag_B Septin-6, protein NEDD5 84.3 0.42 1.4E-05 53.3 2.7 22 391-412 44-65 (427)
379 2g3y_A GTP-binding protein GEM 84.2 0.56 1.9E-05 46.9 3.4 25 387-411 35-59 (211)
380 2x77_A ADP-ribosylation factor 84.2 0.35 1.2E-05 46.4 1.8 23 389-411 22-44 (189)
381 1rz3_A Hypothetical protein rb 84.2 0.43 1.5E-05 47.0 2.5 23 391-413 24-46 (201)
382 2jeo_A Uridine-cytidine kinase 84.2 0.5 1.7E-05 48.1 3.1 24 391-414 27-50 (245)
383 2qm8_A GTPase/ATPase; G protei 84.2 0.44 1.5E-05 51.4 2.7 23 391-413 57-79 (337)
384 3eph_A TRNA isopentenyltransfe 84.2 1.2 4.2E-05 49.2 6.3 29 391-419 4-32 (409)
385 3nh6_A ATP-binding cassette SU 83.9 0.49 1.7E-05 50.4 2.9 25 391-415 82-106 (306)
386 3d3q_A TRNA delta(2)-isopenten 83.8 0.66 2.3E-05 50.1 3.9 28 391-418 9-36 (340)
387 1tq4_A IIGP1, interferon-induc 83.8 0.84 2.9E-05 50.7 4.8 25 391-415 71-95 (413)
388 2qag_C Septin-7; cell cycle, c 83.8 0.55 1.9E-05 52.3 3.3 25 390-414 32-56 (418)
389 2yc2_C IFT27, small RAB-relate 83.7 0.29 9.9E-06 47.5 1.0 25 388-412 19-43 (208)
390 2qu8_A Putative nucleolar GTP- 83.7 0.56 1.9E-05 46.8 3.1 24 389-412 29-52 (228)
391 1f6b_A SAR1; gtpases, N-termin 83.7 0.38 1.3E-05 47.0 1.8 22 390-411 26-47 (198)
392 2qnr_A Septin-2, protein NEDD5 83.6 0.42 1.4E-05 50.6 2.2 23 390-412 19-41 (301)
393 1nlf_A Regulatory protein REPA 83.5 0.44 1.5E-05 49.5 2.3 26 387-413 29-54 (279)
394 1p9r_A General secretion pathw 83.5 0.48 1.6E-05 52.7 2.7 25 391-415 169-193 (418)
395 2gmg_A Hypothetical protein PF 83.4 0.48 1.7E-05 42.1 2.1 31 149-186 63-93 (105)
396 1sq5_A Pantothenate kinase; P- 83.4 0.52 1.8E-05 49.9 2.9 24 391-414 82-105 (308)
397 2a5y_B CED-4; apoptosis; HET: 83.4 0.76 2.6E-05 52.7 4.5 44 359-411 131-174 (549)
398 3b1v_A Ferrous iron uptake tra 83.4 0.57 2E-05 48.9 3.1 23 390-412 4-26 (272)
399 2d2e_A SUFC protein; ABC-ATPas 83.3 0.54 1.8E-05 48.4 2.8 22 391-412 31-52 (250)
400 2pjz_A Hypothetical protein ST 83.2 0.56 1.9E-05 48.8 2.9 23 391-413 32-54 (263)
401 2bbs_A Cystic fibrosis transme 83.2 0.45 1.6E-05 50.2 2.3 25 391-415 66-90 (290)
402 2zu0_C Probable ATP-dependent 83.2 0.55 1.9E-05 48.9 2.9 23 391-413 48-70 (267)
403 3r7w_A Gtpase1, GTP-binding pr 83.0 0.63 2.2E-05 49.3 3.3 24 389-412 3-26 (307)
404 1xx6_A Thymidine kinase; NESG, 82.9 1.6 5.5E-05 43.0 6.1 26 454-479 82-107 (191)
405 3t5d_A Septin-7; GTP-binding p 82.8 0.54 1.8E-05 48.8 2.6 23 389-411 8-30 (274)
406 3io5_A Recombination and repai 82.8 0.58 2E-05 50.2 2.9 24 386-411 27-50 (333)
407 1rj9_A FTSY, signal recognitio 82.5 0.46 1.6E-05 50.5 2.0 28 387-415 101-128 (304)
408 1nij_A Hypothetical protein YJ 82.3 1.3 4.3E-05 47.2 5.4 22 392-413 7-28 (318)
409 4djt_A GTP-binding nuclear pro 82.0 0.33 1.1E-05 47.8 0.7 24 388-411 10-33 (218)
410 4dhe_A Probable GTP-binding pr 81.8 0.54 1.8E-05 46.4 2.1 24 389-412 29-52 (223)
411 3tui_C Methionine import ATP-b 81.8 0.73 2.5E-05 50.3 3.3 25 391-415 56-80 (366)
412 4dkx_A RAS-related protein RAB 81.8 0.78 2.7E-05 46.1 3.3 22 390-411 14-35 (216)
413 1vma_A Cell division protein F 81.7 2 6.8E-05 45.6 6.6 23 391-413 106-128 (306)
414 2f1r_A Molybdopterin-guanine d 81.7 0.56 1.9E-05 45.5 2.1 25 391-415 4-28 (171)
415 3i8s_A Ferrous iron transport 81.6 0.65 2.2E-05 48.3 2.7 24 389-412 3-26 (274)
416 2f6r_A COA synthase, bifunctio 81.4 0.7 2.4E-05 48.3 2.9 22 390-411 76-97 (281)
417 3lda_A DNA repair protein RAD5 81.3 0.86 3E-05 50.3 3.7 23 387-410 177-199 (400)
418 2gk6_A Regulator of nonsense t 81.3 1.1 3.7E-05 52.4 4.7 21 391-411 197-217 (624)
419 1u0l_A Probable GTPase ENGC; p 81.2 0.72 2.5E-05 48.7 2.9 25 391-415 171-195 (301)
420 3gd7_A Fusion complex of cysti 81.2 0.56 1.9E-05 51.7 2.1 24 391-414 49-72 (390)
421 3b9q_A Chloroplast SRP recepto 81.1 2 6.7E-05 45.5 6.3 26 388-414 100-125 (302)
422 3hr8_A Protein RECA; alpha and 81.0 0.62 2.1E-05 50.7 2.4 23 391-413 63-85 (356)
423 1odf_A YGR205W, hypothetical 3 80.9 0.67 2.3E-05 48.9 2.5 25 391-415 33-57 (290)
424 1h65_A Chloroplast outer envel 80.7 0.76 2.6E-05 47.5 2.8 23 389-411 39-61 (270)
425 1bif_A 6-phosphofructo-2-kinas 80.6 0.85 2.9E-05 51.3 3.4 24 390-413 40-63 (469)
426 2hf9_A Probable hydrogenase ni 80.6 0.81 2.8E-05 45.3 2.9 22 391-412 40-61 (226)
427 3th5_A RAS-related C3 botulinu 81.6 0.33 1.1E-05 47.4 0.0 23 389-411 30-52 (204)
428 3ozx_A RNAse L inhibitor; ATP 80.5 0.92 3.2E-05 52.1 3.7 28 387-415 24-51 (538)
429 3iby_A Ferrous iron transport 80.2 0.74 2.5E-05 47.5 2.5 22 391-412 3-24 (256)
430 3cmw_A Protein RECA, recombina 80.0 0.89 3.1E-05 58.8 3.7 22 391-412 1084-1105(1706)
431 2yv5_A YJEQ protein; hydrolase 80.0 1.3 4.4E-05 46.9 4.4 24 391-415 167-190 (302)
432 1f2t_A RAD50 ABC-ATPase; DNA d 79.7 0.95 3.2E-05 42.6 2.9 22 392-413 26-47 (149)
433 1mky_A Probable GTP-binding pr 79.6 0.95 3.2E-05 50.4 3.4 26 388-413 179-204 (439)
434 3e70_C DPA, signal recognition 79.6 0.89 3E-05 48.8 3.0 27 387-414 128-154 (328)
435 2wsm_A Hydrogenase expression/ 79.4 0.83 2.8E-05 45.0 2.6 23 391-413 32-54 (221)
436 2px0_A Flagellar biosynthesis 79.4 2.2 7.5E-05 45.0 6.0 26 387-413 104-129 (296)
437 2vp4_A Deoxynucleoside kinase; 79.3 0.93 3.2E-05 45.6 2.9 25 387-412 19-43 (230)
438 2rcn_A Probable GTPase ENGC; Y 79.1 0.94 3.2E-05 49.3 3.0 24 391-414 217-240 (358)
439 2wjy_A Regulator of nonsense t 79.1 1.2 4.2E-05 53.5 4.3 22 391-412 373-394 (800)
440 1v5w_A DMC1, meiotic recombina 78.9 0.95 3.3E-05 48.7 3.0 22 391-412 124-145 (343)
441 4ag6_A VIRB4 ATPase, type IV s 78.8 0.99 3.4E-05 49.3 3.2 23 390-412 36-58 (392)
442 2npi_A Protein CLP1; CLP1-PCF1 78.8 0.65 2.2E-05 52.3 1.7 24 391-414 140-163 (460)
443 3gmt_A Adenylate kinase; ssgci 78.8 0.92 3.2E-05 46.3 2.7 29 391-419 10-38 (230)
444 3kw6_A 26S protease regulatory 78.7 6.5 0.00022 32.4 7.6 43 572-614 33-75 (78)
445 2qag_A Septin-2, protein NEDD5 78.7 0.86 3E-05 49.5 2.6 23 390-412 38-60 (361)
446 3gj0_A GTP-binding nuclear pro 78.6 0.7 2.4E-05 45.7 1.7 24 388-411 14-38 (221)
447 2www_A Methylmalonic aciduria 78.6 1.2 4E-05 48.2 3.5 24 390-413 75-98 (349)
448 1ega_A Protein (GTP-binding pr 78.5 1 3.5E-05 47.5 3.0 22 391-412 10-31 (301)
449 1p5z_B DCK, deoxycytidine kina 78.4 0.83 2.8E-05 46.9 2.2 26 390-415 25-50 (263)
450 2ocp_A DGK, deoxyguanosine kin 78.2 1.2 4.1E-05 45.0 3.4 25 391-415 4-28 (241)
451 3cmu_A Protein RECA, recombina 78.1 1.3 4.6E-05 58.0 4.4 23 391-413 1429-1451(2050)
452 3iev_A GTP-binding protein ERA 77.8 2.1 7.3E-05 45.2 5.3 22 391-412 12-33 (308)
453 2z43_A DNA repair and recombin 77.8 0.89 3E-05 48.5 2.3 22 391-412 109-130 (324)
454 2og2_A Putative signal recogni 77.7 2.8 9.7E-05 45.5 6.3 27 387-414 156-182 (359)
455 2zr9_A Protein RECA, recombina 77.5 0.93 3.2E-05 49.1 2.4 25 387-412 60-84 (349)
456 2obl_A ESCN; ATPase, hydrolase 77.5 1.3 4.3E-05 48.0 3.4 24 391-414 73-96 (347)
457 1np6_A Molybdopterin-guanine d 77.3 1.2 4.2E-05 43.2 3.0 24 391-414 8-31 (174)
458 2v6i_A RNA helicase; membrane, 77.3 1.5 5.1E-05 48.7 4.1 16 391-406 4-19 (431)
459 2axn_A 6-phosphofructo-2-kinas 77.2 1.1 3.7E-05 51.3 3.0 24 390-413 36-59 (520)
460 2dpy_A FLII, flagellum-specifi 77.0 1.2 4E-05 49.9 3.1 25 391-415 159-183 (438)
461 3def_A T7I23.11 protein; chlor 77.0 1.1 3.8E-05 46.0 2.7 23 389-411 36-58 (262)
462 3aji_B S6C, proteasome (prosom 76.9 7.4 0.00025 32.4 7.5 47 571-617 30-76 (83)
463 2i1q_A DNA repair and recombin 76.8 0.99 3.4E-05 47.9 2.3 25 387-412 97-121 (322)
464 1t9h_A YLOQ, probable GTPase E 76.8 0.59 2E-05 49.8 0.5 24 391-414 175-198 (307)
465 3tqf_A HPR(Ser) kinase; transf 76.8 1.3 4.4E-05 43.4 2.8 22 390-411 17-38 (181)
466 3llm_A ATP-dependent RNA helic 76.7 2.1 7E-05 43.1 4.6 19 391-409 78-96 (235)
467 3t34_A Dynamin-related protein 76.7 1.2 4.2E-05 48.0 3.1 26 391-416 36-63 (360)
468 3h1t_A Type I site-specific re 76.6 6.7 0.00023 45.0 9.5 20 391-410 200-219 (590)
469 1xjc_A MOBB protein homolog; s 76.6 1.2 4E-05 43.3 2.5 23 391-413 6-28 (169)
470 2qtf_A Protein HFLX, GTP-bindi 76.6 1.1 3.7E-05 48.9 2.6 28 385-412 174-202 (364)
471 1yqt_A RNAse L inhibitor; ATP- 76.1 1.3 4.6E-05 50.7 3.3 25 391-415 49-73 (538)
472 2j9r_A Thymidine kinase; TK1, 76.0 6.8 0.00023 39.3 8.1 26 454-479 102-127 (214)
473 3fdi_A Uncharacterized protein 75.8 1.5 5.2E-05 43.4 3.2 29 391-419 8-36 (201)
474 2yhs_A FTSY, cell division pro 75.7 3.4 0.00011 46.9 6.4 24 391-414 295-318 (503)
475 2ohf_A Protein OLA1, GTP-bindi 75.6 1.4 4.9E-05 48.5 3.2 25 388-412 21-45 (396)
476 1puj_A YLQF, conserved hypothe 75.4 1.4 4.7E-05 46.2 2.9 24 388-411 119-142 (282)
477 2aka_B Dynamin-1; fusion prote 75.3 1.1 3.9E-05 46.3 2.3 23 390-412 27-49 (299)
478 1c9k_A COBU, adenosylcobinamid 75.3 1.5 5.1E-05 43.0 2.9 21 392-412 2-22 (180)
479 1tf7_A KAIC; homohexamer, hexa 75.3 1.1 3.7E-05 51.2 2.3 32 391-422 41-77 (525)
480 2e87_A Hypothetical protein PH 75.3 1.3 4.5E-05 47.8 2.8 26 388-413 166-191 (357)
481 3euj_A Chromosome partition pr 75.0 1.3 4.5E-05 50.1 2.8 25 391-415 31-55 (483)
482 1wf3_A GTP-binding protein; GT 74.7 1.5 5.1E-05 46.3 3.0 21 391-411 9-29 (301)
483 2hjg_A GTP-binding protein ENG 74.7 2.5 8.7E-05 46.9 5.0 25 388-412 174-198 (436)
484 3bh0_A DNAB-like replicative h 74.7 1.4 4.9E-05 46.7 2.9 21 391-411 70-90 (315)
485 3cr8_A Sulfate adenylyltranfer 74.6 1.4 4.9E-05 50.6 3.1 24 391-414 371-394 (552)
486 3l0i_B RAS-related protein RAB 74.5 0.42 1.4E-05 46.5 -1.3 23 389-411 33-55 (199)
487 1qhl_A Protein (cell division 74.5 0.76 2.6E-05 46.7 0.7 23 393-415 31-53 (227)
488 3p32_A Probable GTPase RV1496/ 74.3 3.3 0.00011 44.6 5.7 22 391-412 81-102 (355)
489 2xzl_A ATP-dependent helicase 74.2 1.8 6.3E-05 52.1 4.0 21 391-411 377-397 (802)
490 1ni3_A YCHF GTPase, YCHF GTP-b 74.2 1.5 5.2E-05 48.2 3.0 24 389-412 20-43 (392)
491 3geh_A MNME, tRNA modification 74.0 1.2 4.1E-05 50.2 2.1 30 383-412 218-247 (462)
492 2dby_A GTP-binding protein; GD 74.0 1.5 5.2E-05 47.8 2.9 22 391-412 3-24 (368)
493 2wkq_A NPH1-1, RAS-related C3 73.7 1.6 5.5E-05 45.7 2.9 23 390-412 156-178 (332)
494 3cnl_A YLQF, putative uncharac 73.7 1.4 4.9E-05 45.5 2.5 23 390-412 100-122 (262)
495 3b0c_W CENP-W, centromere prot 73.6 14 0.00048 30.6 8.2 68 526-613 4-71 (76)
496 1tf7_A KAIC; homohexamer, hexa 73.4 1.1 3.6E-05 51.3 1.5 24 391-414 283-306 (525)
497 1u94_A RECA protein, recombina 73.3 1.6 5.5E-05 47.4 2.9 24 388-412 63-86 (356)
498 3qks_A DNA double-strand break 73.1 1.8 6E-05 42.9 2.9 22 392-413 26-47 (203)
499 1jal_A YCHF protein; nucleotid 72.9 1.8 6.2E-05 47.1 3.2 23 390-412 3-25 (363)
500 4edh_A DTMP kinase, thymidylat 72.6 1.8 6.3E-05 43.3 2.9 24 391-414 8-31 (213)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-91 Score=818.52 Aligned_cols=549 Identities=36% Similarity=0.631 Sum_probs=490.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003809 15 RVENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLLQKAIADEYLRFEPYLKNACKRFVMEQ 94 (794)
Q Consensus 15 ~v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~fd~~La~~I~~~p~r~l~~l~~al~~~v~~~ 94 (794)
+++++|++||++|.+.+ +.++|+++|++|...+..+|+|||.||.+|++.||+.|.++|.+++|+|+.|+++++.+.
T Consensus 3 ~~~~~f~~Fl~~~~~~~---~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~ 79 (595)
T 3f9v_A 3 DYRDVFIEFLTTFKGNN---NQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQL 79 (595)
T ss_dssp CHHHHHHHHHHHCCTTT---TSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccC---CChhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHhh
Confidence 46889999999998764 778999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCccEEEEeeeCCCcccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEecC--CCceeeee---ecc
Q 003809 95 NPNFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLE--CGGVIKNV---EQQ 169 (794)
Q Consensus 95 ~~~~~~~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C~~--C~~~~~~v---~q~ 169 (794)
.+.+.. ..++++|+|+|+|....+|+|++.++|+||+|+|+|+|+|.|+|++..++|.|.. |++.+... .+.
T Consensus 80 ~~~~~~---~~~~~~v~~~~~~~~~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~ 156 (595)
T 3f9v_A 80 DPTYQR---DIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMP 156 (595)
T ss_dssp CGGGTT---TCCCCCCCEECCSCEECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCC
T ss_pred chhhhh---ccceEEEEEeCCCCCCChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCEEEEEeccccC
Confidence 776531 2357999999999999999999999999999999999999999999999999999 99987644 245
Q ss_pred ccccCCcCCCCCCCCCCCceeeccCCceeEeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCEEEEEEEEEEe
Q 003809 170 FKYTEPTICANATCSNRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFTGTVVVI 249 (794)
Q Consensus 170 ~~~t~P~~C~~~~C~~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~v~vtGil~~~ 249 (794)
++|++|..| |.|+++++|.++.+.|+|+|||+|||||.|+.+|.|++|||++|+|++|||++|+|||+|.||||+++.
T Consensus 157 ~~~~~p~~C--~~C~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~ 234 (595)
T 3f9v_A 157 EVLEMPTIC--PKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIK 234 (595)
T ss_dssp SSCCCCSSC--TTTCCCSEEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCC
T ss_pred CcccCCCcC--CCCCCCCceEEeccCceeeeeEEEEEEeccccCCCCCCCceEEEEEecccccccccCCEEEEEEEEEec
Confidence 689999999 559998899999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccccCCCCCchhhhhhcccccCCccCCCccccceecccccchhheeeeeceEeecCCCccccccccccccchhhccCC
Q 003809 250 PDILAMGSPGERAECRREASQRKSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADEEDQHQF 329 (794)
Q Consensus 250 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (794)
|+.+ . ++ |. ...|++++.|++|+..... .....+
T Consensus 235 ~~~~------~-----------~~------~~---------~~~~~~~i~a~~i~~~~~~--------------~~~~~~ 268 (595)
T 3f9v_A 235 QDSP------V-----------KR------GS---------RAVFDIYMKVSSIEVSQKV--------------LDEVII 268 (595)
T ss_dssp CSST------T-----------SC------TT---------CCCCCCCCEEEEEEECCCC--------------CCCCCC
T ss_pred cccc------c-----------cC------CC---------cceEEEEEEEEeecccccc--------------cccCCC
Confidence 6431 0 00 00 0148899999999865321 122367
Q ss_pred CHHHHHHHHHHHcCCchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHH
Q 003809 330 TTEEIDEIQRMRNAPDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYA 409 (794)
Q Consensus 330 t~~e~~~i~~~~~~~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i 409 (794)
|+++++.+.++++++++|+.|.++++|.|+|++.+|++++++|+||..+..++ .++||++|+||+||||||||+||+++
T Consensus 269 t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~l 347 (595)
T 3f9v_A 269 SEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFI 347 (595)
T ss_dssp TTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSS
T ss_pred CHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccC-CCcCCCcceEEECCCchHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999998887777 89999999999999999999999999
Q ss_pred HhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecce
Q 003809 410 AGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGI 489 (794)
Q Consensus 410 ~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~ 489 (794)
++.+++..++.+..++..|+++.+.++..+|.+..++|++.+|++||||||||++|+++.+.+|+++||++++++.++|.
T Consensus 348 a~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~ 427 (595)
T 3f9v_A 348 SRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGI 427 (595)
T ss_dssp STTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSS
T ss_pred HHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCc
Confidence 99999999998888899999999999888899999999999999999999999999999999999999999999999999
Q ss_pred EEeecCceEEEEecCCCCCCCCCCCCcc----------Ccc---------------------------cccCccccHHHH
Q 003809 490 QATLNARTSILAAANPAGGRYDKSKPLK----------KHE---------------------------DALAPAFTTAQL 532 (794)
Q Consensus 490 ~~~l~ar~siiAaaNP~~Gryd~~~~l~----------~~~---------------------------~~~~~~~~~~~l 532 (794)
...++++++||||+||..|+|+...++. .+- ....+.++.+.|
T Consensus 428 ~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l 507 (595)
T 3f9v_A 428 VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTL 507 (595)
T ss_dssp EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTT
T ss_pred EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHH
Confidence 9999999999999999999997665221 000 011245677889
Q ss_pred HHHHHHHhc-cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 533 KRYIAYAKT-LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 533 r~yi~~ar~-~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
++|+.||+. ++|.++++|.+.|.++|..+|+..... ....+++|+|+|++++|+|+|+|++++++.|+++||.+|++|
T Consensus 508 ~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~-~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 508 RKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSET-PDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp HHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBC-SSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccC-CCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 999999996 699999999999999999999886532 234689999999999999999999999999999999999999
Q ss_pred Hhhhcccc
Q 003809 612 LKTSVISV 619 (794)
Q Consensus 612 ~~~s~~~~ 619 (794)
++.|+.++
T Consensus 587 ~~~sl~~~ 594 (595)
T 3f9v_A 587 MRLFLESV 594 (595)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99998765
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=3.9e-65 Score=568.64 Aligned_cols=355 Identities=27% Similarity=0.370 Sum_probs=301.3
Q ss_pred CCceeEeeeEEEeeccCCCCCCCCCceEEEEEEeccccc------ccccCCEEEEEEEEEEeccccccCCCCCchhhhhh
Q 003809 194 QDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVE------QARAGDTVIFTGTVVVIPDILAMGSPGERAECRRE 267 (794)
Q Consensus 194 ~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd------~~kpGD~v~vtGil~~~p~~~~~~~~~~~~~~~~~ 267 (794)
+++.|.|||.|+|||.|+++|.|++||+++|+|++|||| +|+|||+|.|+||++.
T Consensus 109 ~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~------------------- 169 (506)
T 3f8t_A 109 ERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRS------------------- 169 (506)
T ss_dssp SCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEET-------------------
T ss_pred hhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEE-------------------
Confidence 577889999999999999999999999999999999999 9999999999999851
Q ss_pred cccccCCccCCCccccceecccccchhheeeeeceEeecCCCccccccccccccchhhccCCCHHHHHHHHHHHcCCchH
Q 003809 268 ASQRKSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKKDADEEDQHQFTTEEIDEIQRMRNAPDFF 347 (794)
Q Consensus 268 ~~~~~~~~~~~~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~i~~~~~~~~i~ 347 (794)
. ++.|++|+.. . ......||+++++.|++++++ ++|
T Consensus 170 --------------------------~--~l~a~~i~~~-~--------------~~~~~~~t~ed~~~i~~l~~~-~~~ 205 (506)
T 3f8t_A 170 --------------------------A--TLDALEVHKK-D--------------PIPEVHPDPAELEEFRELADK-DPL 205 (506)
T ss_dssp --------------------------T--EEEEEEEEEE-C--------------SSCCCCCCHHHHHHHHHHHHS-CHH
T ss_pred --------------------------e--EEEEEEEEEc-C--------------ccccCCCCHHHHHHHHHHHHH-HHH
Confidence 0 5678888762 1 112346899999999999999 999
Q ss_pred HHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHH-HhhCCcceeecCCccCc
Q 003809 348 NKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYA-AGIVPRSVYTSGKSSSA 426 (794)
Q Consensus 348 ~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i-~~~~p~~~~~~g~~ss~ 426 (794)
++|++||+| |+||+.+|+||+++|+||+.+ .||++||||+|+||| ||+|++++ ++++|+.+|++|..++.
T Consensus 206 ~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~ 276 (506)
T 3f8t_A 206 TTFARAIAP-LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTEL 276 (506)
T ss_dssp HHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCH
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCc
Confidence 999999999 999999999999999999864 899999999999999 99999999 99999999999998888
Q ss_pred cccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 427 AGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 427 ~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
.||+++ .+++ +| |.+++|++++||+||||||||++|+++.|.+|+++||+|++++. |. ++|++|+||||+||+
T Consensus 277 ~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 277 TDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPG 349 (506)
T ss_dssp HHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCC
T ss_pred cCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCcc
Confidence 899999 8887 88 99999999999999999999999999999999999999999998 77 999999999999999
Q ss_pred CCCCCCCCCc-----c----Cc-----------c-----cccCccccHHHHHHHHHHHh--ccCCcCCHHHHHHHHHHHH
Q 003809 507 GGRYDKSKPL-----K----KH-----------E-----DALAPAFTTAQLKRYIAYAK--TLKPKLSLEARKLLVDSYV 559 (794)
Q Consensus 507 ~Gryd~~~~l-----~----~~-----------~-----~~~~~~~~~~~lr~yi~~ar--~~~P~ls~ea~~~L~~~Y~ 559 (794)
+ +|++.+++ . .+ + +...+.++.+.|++|+.||| .++|.+++++.++|+++|.
T Consensus 350 ~-~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 350 E-QWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp C---CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHH
T ss_pred c-ccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHH
Confidence 9 88754332 1 00 0 11235688999999999999 4799999999999999999
Q ss_pred HhccCCCC--CCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhccc----ccCCcccccc
Q 003809 560 ALRRGDTT--PGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVIS----VESSEIDLSE 628 (794)
Q Consensus 560 ~lR~~~~~--~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~~----~~~~~i~~~~ 628 (794)
.+|..... ......+++|+|++++|+|+|+|+|+|++++.|+++||++|++|++.|+.+ .+++.||++.
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~a~dp~tg~id~~~ 503 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQIPGGDEIRISS 503 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeEeEEe
Confidence 99973110 011246889999999999999999999999999999999999999999864 4777887764
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=5.2e-52 Score=443.36 Aligned_cols=276 Identities=24% Similarity=0.431 Sum_probs=212.2
Q ss_pred ccCCcccchhHHHHHHHHHHHHhhcccCCCCCCccchHHHHHHHH--HCCCcEEEEecchHhhhhHHHHHHHHHHHHHHH
Q 003809 3 AFGGILVDEKAVRVENIFLEFLKSFRLDGNMGGESCYEAEIEAMR--ANESNTMFIDFSHVMRYNDLLQKAIADEYLRFE 80 (794)
Q Consensus 3 ~~~~~~~d~~~~~v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~--~~~~~tL~Vd~~~L~~fd~~La~~I~~~p~r~l 80 (794)
++||+-.-+.-++++++|++||++| +|+++|++|+ ..+..+|+|||.||.+|++.||..|.++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~f~~Fl~~~----------~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l 70 (279)
T 1ltl_A 1 GSGSRMKTVDKSKTLTKFEEFFSLQ----------DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVI 70 (279)
T ss_dssp --------CCHHHHHHHHHHHTTSH----------HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHH
T ss_pred CCcchhhcCChHHHHHHHHHHhccc----------hHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHH
Confidence 4577777778889999999999877 5999999999 778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCccEEEEeeeCCCcccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEecCCC
Q 003809 81 PYLKNACKRFVMEQNPNFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECG 160 (794)
Q Consensus 81 ~~l~~al~~~v~~~~~~~~~~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C~~C~ 160 (794)
|+|++|++++. + +. . .. .++|+|+|+|....+|+|++.++|+||+|+|+|||+|.|+|++..++|.|..||
T Consensus 71 ~~~~~a~~~~~----~-~~--~-~~-~~~vr~~~~~~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~ 141 (279)
T 1ltl_A 71 RAAQQAIRNID----R-LR--K-NV-DLNIRFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCM 141 (279)
T ss_dssp HHHHHHHTTTC----T-TC--C-CC-CCEEEEECCSCBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTC
T ss_pred HHHHHHHHHhc----c-cc--C-Ce-eEEEEEECCCCCCCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCC
Confidence 99999998873 2 21 1 22 799999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeec-cccccCCcCCCCCCCCCCCceeeccCCceeEeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCE
Q 003809 161 GVIKNVEQ-QFKYTEPTICANATCSNRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDT 239 (794)
Q Consensus 161 ~~~~~v~q-~~~~t~P~~C~~~~C~~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~ 239 (794)
+.+. +.+ .++|++|+.|+ .|++++ |.++.+.|+|+|||+|||||+|+.+|.|++|||++|+|++||||+|+|||+
T Consensus 142 ~~~~-v~~~~~~~~~P~~Cp--~C~~~~-f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDr 217 (279)
T 1ltl_A 142 RHHA-VTQSTNMITEPSLCS--ECGGRS-FRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDI 217 (279)
T ss_dssp CEEE-EECSSSSCCCCSCCT--TTCCCC-EEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCE
T ss_pred CEEE-EEecCCcccCCCcCC--CCCCCC-cEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCE
Confidence 8864 444 45899999995 599987 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeccccccCCCCCchhhhhhcccccCCccCCCccccceecccccchhheeeeeceEeecCCCcccccccccc
Q 003809 240 VIFTGTVVVIPDILAMGSPGERAECRREASQRKSSAVGHDGVRGLRALGVRDLSYRLAFIANSVQIADGRRDTDIRNRKK 319 (794)
Q Consensus 240 v~vtGil~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lk~~gv~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~ 319 (794)
|+||||+++.|.. + ...|++++.|++|+..+.
T Consensus 218 V~vtGI~~~~~~~---------------------------~----------~~~~~~~l~a~~I~~~~~----------- 249 (279)
T 1ltl_A 218 VRVTGTLRTVRDE---------------------------R----------TKRFKNFIYGNYTEFLEQ----------- 249 (279)
T ss_dssp EEEEEEEEEEEET---------------------------T----------TTEEEEEEEEEECCBC-------------
T ss_pred EEEEEEEEEeeCC---------------------------C----------CceEEEEEEEEEEEEecC-----------
Confidence 9999999876410 0 014899999999976532
Q ss_pred ccchhhccCCCHHHHHHHHHHHcCCchHHHhhh
Q 003809 320 DADEEDQHQFTTEEIDEIQRMRNAPDFFNKIVD 352 (794)
Q Consensus 320 ~~~~~~~~~~t~~e~~~i~~~~~~~~i~~~l~~ 352 (794)
......||++|+++|++++++|++|++|++
T Consensus 250 ---~~~~~~~t~ed~~~i~~ls~~~~iy~~L~~ 279 (279)
T 1ltl_A 250 ---EFEELQISEEDEEKIKELAGDPNIYEKIIR 279 (279)
T ss_dssp ---------------------------------
T ss_pred ---ccccCCCCHHHHHHHHHHhcCCCHHHHhhC
Confidence 112347899999999999999999999864
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.4e-50 Score=425.78 Aligned_cols=229 Identities=28% Similarity=0.578 Sum_probs=212.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCccchHHHHHHHHHCCCcEEEEecchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003809 15 RVENIFLEFLKSFRLDGNMGGESCYEAEIEAMRANESNTMFIDFSHVMRYNDLLQKAIADEYLRFEPYLKNACKRFVMEQ 94 (794)
Q Consensus 15 ~v~~~F~~FL~~f~~~~~~~~~~~Y~~~i~~~~~~~~~tL~Vd~~~L~~fd~~La~~I~~~p~r~l~~l~~al~~~v~~~ 94 (794)
++.++|++||++|.+.+ +..+|+++|++|...+..+|+|||.||.+|++.||.+|.++|.+++|+|++|+++++...
T Consensus 9 ~~~~~f~~Fl~~f~~~~---~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~ 85 (268)
T 2vl6_A 9 DYRDVFIEFLTTFKGNN---NQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQL 85 (268)
T ss_dssp CHHHHHHHHHHHCCCSS---SSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccc---CchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHh
Confidence 56789999999997543 678999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCccEEEEeeeCCCcccccccCccccCcEEEEEEEEEEeccceeEEEEEEEEe--cCCCceeeee---ecc
Q 003809 95 NPNFISDDNPNKDINVAFFNIPFSKRLRELTTAEIGRLVSVTGVVTRTSEVRPELLQGTFKC--LECGGVIKNV---EQQ 169 (794)
Q Consensus 95 ~~~~~~~~~~~~~~~V~f~nlp~~~~iR~L~s~~igkLV~i~G~V~r~S~V~p~l~~~~f~C--~~C~~~~~~v---~q~ 169 (794)
.+.+. ...+.++|+|+|+|....+|+|++.++|+||+|+|+|||+|.|+|++..++|.| ..||+.+... .+.
T Consensus 86 ~~~~~---~~~~~~~vr~~~~~~~~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~ 162 (268)
T 2vl6_A 86 DPTYQ---RDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMP 162 (268)
T ss_dssp CGGGT---TTCSCCCEEEECCSCEECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESSTTSCCC
T ss_pred Cchhh---ccCccEEEEEECCCCCCccccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCEEeeeecccCC
Confidence 66542 234679999999999999999999999999999999999999999999999999 9999987655 456
Q ss_pred ccccCCcCCCCCCCCCCCceeeccCCceeEeeeEEEeeccCCCCCCCCCceEEEEEEecccccccccCCEEEEEEEEEEe
Q 003809 170 FKYTEPTICANATCSNRTNWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHDIVEQARAGDTVIFTGTVVVI 249 (794)
Q Consensus 170 ~~~t~P~~C~~~~C~~~~~f~l~~~~S~f~D~Q~IrIQE~~~~~p~G~~Prsi~ViL~~dlVd~~kpGD~v~vtGil~~~ 249 (794)
++|++|+.| |.|+++++|.++.+.|+|+|||+|||||+|+.+|.|++|||++|+|++||||+|+|||+|+||||+++.
T Consensus 163 ~~~~~P~~C--p~C~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~ 240 (268)
T 2vl6_A 163 EVLEMPTIC--PKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIK 240 (268)
T ss_dssp TTCCCCSBC--TTTCCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEE
T ss_pred CcccCCccC--CCCCCCCCEEEecCccEEEeeEEEEEEeCCCCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEe
Confidence 789999999 579998889999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc
Q 003809 250 PD 251 (794)
Q Consensus 250 p~ 251 (794)
|+
T Consensus 241 ~~ 242 (268)
T 2vl6_A 241 QD 242 (268)
T ss_dssp CS
T ss_pred ec
Confidence 75
No 5
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=99.96 E-value=8.7e-30 Score=234.12 Aligned_cols=112 Identities=21% Similarity=0.428 Sum_probs=98.5
Q ss_pred CCCceeeeHHHHHHHHHHHHHHHHhhhhhhhhcCCcCCCCChhHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHH
Q 003809 676 QGKTLVISDEYFQRVTQALVMRLRQHEESVIQEGTGLAGMRQKDLIKWYVEQQNEKNTYSSMEEVKKEVSKLKAIIESLI 755 (794)
Q Consensus 676 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 755 (794)
+++|++|||++|++|+|+||.|||+.|++ .++.|+++++||+|||+|+ +++++|++|+.++++++++||+|||
T Consensus 2 ~k~k~~Is~d~Y~~i~n~lV~~ir~~E~~-----~~~~G~~~~eLv~WYLeq~--e~~i~seeel~~e~~lv~kVI~rLI 74 (114)
T 2klq_A 2 PKASLRLGFSEYSRISNLIVLHLRKVEEE-----EDESALKRSELVNWYLKEI--ESEIDSEEELINKKRIIEKVIHRLT 74 (114)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHH-----TSSSCBCHHHHHHHHHHHH--TTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEeeHHHHHHHHHHHHHHHHHHhhh-----cccCCCCHHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999998873 2568999999999999999 8999999999999999999999999
Q ss_pred hcCCEEEEEeCCccccccCCCCCCCCCeEEEEcCCCCCC
Q 003809 756 RREGHLIVVDDGRQAAAEGEGRPSRDDRILAVAPNYVID 794 (794)
Q Consensus 756 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~~~~ 794 (794)
++|++||+++++++++.+++++...++++|+|||||+++
T Consensus 75 ~~D~iLi~v~~~~l~~~~~~~~~~~~~~~lvVHPNy~~~ 113 (114)
T 2klq_A 75 HYDHVLIELTQAGLKGSTEGSESYEEDPYLVVNPNYLLE 113 (114)
T ss_dssp HTTCCEECCSSHHHHCCSSCCCSTTCCCBCEECSCCCCC
T ss_pred hhCCEEEEEcCCCcccccccccccccceEEEECCCCCCC
Confidence 999999999988766543323345678999999999875
No 6
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.88 E-value=1.5e-21 Score=212.19 Aligned_cols=248 Identities=18% Similarity=0.224 Sum_probs=180.8
Q ss_pred chHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee--cCC
Q 003809 345 DFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT--SGK 422 (794)
Q Consensus 345 ~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~--~g~ 422 (794)
+++.++..++++.|+|++.++++++.++.+|. |+||+||||||||++++++++.++..++. ...
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--------------~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~ 81 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--------------HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTP 81 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--------------CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--------------eEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCC
Confidence 46888999999999999999999999998875 89999999999999999999998776543 211
Q ss_pred ccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEe
Q 003809 423 SSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAA 502 (794)
Q Consensus 423 ~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAa 502 (794)
.....++++....+...+.|...+|.+ .++|+||||++++++..+..|+++|+++.+++. |.....+.++.++||
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~--g~~~~~~~~~~viat 156 (331)
T 2r44_A 82 DLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTIG--DTTYPLDNPFLVLAT 156 (331)
T ss_dssp TCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET--TEEEECCSSCEEEEE
T ss_pred CCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceeeC--CEEEECCCCEEEEEe
Confidence 222333444333333445565666665 358999999999999999999999999999884 888889999999999
Q ss_pred cCCCC--CCCCCCCCccCc-c--cccCccccHHHHHHHHHHH---------------------hc--cCCcCCHHHHHHH
Q 003809 503 ANPAG--GRYDKSKPLKKH-E--DALAPAFTTAQLKRYIAYA---------------------KT--LKPKLSLEARKLL 554 (794)
Q Consensus 503 aNP~~--Gryd~~~~l~~~-~--~~~~~~~~~~~lr~yi~~a---------------------r~--~~P~ls~ea~~~L 554 (794)
+||.. |+|.-...+..+ . -.+. ..+.+.....+... +. ....+++++.+++
T Consensus 157 ~np~~~~~~~~l~~~l~~Rf~~~i~i~-~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i 235 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVDRFMMKIHLT-YLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYI 235 (331)
T ss_dssp ECTTCCSCCCCCCHHHHTTSSEEEECC-CCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHH
T ss_pred cCCCcccCcccCCHHHHhheeEEEEcC-CCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHH
Confidence 99986 443222222211 1 0111 12333333332221 11 2456889999999
Q ss_pred HHHHHHhccCCCCCC----CccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 555 VDSYVALRRGDTTPG----SRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 555 ~~~Y~~lR~~~~~~~----~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
.+.+..+|....... ....+++|+|.+.+++|+|.++|.+++++.|+++||.+|+..+
T Consensus 236 ~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 236 IELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 998888876531000 0134678999999999999999999999999999999999764
No 7
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.86 E-value=2.2e-21 Score=222.37 Aligned_cols=244 Identities=18% Similarity=0.160 Sum_probs=174.1
Q ss_pred chHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc---eeecC
Q 003809 345 DFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSG 421 (794)
Q Consensus 345 ~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g 421 (794)
+.++.+.+++.+.|+|++.+++.+++++.+|. |+||+||||||||+|+++++..++.. .+...
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~--------------~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSGE--------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC--------------EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC--------------eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34778999999999999999999999999886 89999999999999999999988652 22222
Q ss_pred CccCccccccccccC--CCCcccc-cccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceE
Q 003809 422 KSSSAAGLTASVAKE--PETGEFC-IEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTS 498 (794)
Q Consensus 422 ~~ss~~gLt~~v~~d--~~~g~~~-~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~s 498 (794)
..+++..+++..... ...|.+. ...|. ++..+|||||||+++++..+++|+++|+++.+++ .|....++.++
T Consensus 77 ~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~- 151 (500)
T 3nbx_X 77 RFSTPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL- 151 (500)
T ss_dssp TTCCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-
T ss_pred hcCCHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-
Confidence 223444444422111 0122221 22332 2345789999999999999999999999999987 47788888887
Q ss_pred EEEecCCCCC----------CCCCCCCcc--Cc-c----------------cccCccccHHHHHHHHHHHhccCCcCCHH
Q 003809 499 ILAAANPAGG----------RYDKSKPLK--KH-E----------------DALAPAFTTAQLKRYIAYAKTLKPKLSLE 549 (794)
Q Consensus 499 iiAaaNP~~G----------ryd~~~~l~--~~-~----------------~~~~~~~~~~~lr~yi~~ar~~~P~ls~e 549 (794)
+++|+||.+. ||.....+. .. + ....+.++.+.+..+...++. ..++++
T Consensus 152 iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~--v~v~d~ 229 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGE--ITLPDH 229 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTT--CBCCHH
T ss_pred hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCc--ccCchH
Confidence 6677787653 442211111 00 0 011234677788887776655 457899
Q ss_pred HHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhh
Q 003809 550 ARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTS 615 (794)
Q Consensus 550 a~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s 615 (794)
+.+++.+.+..+|.... ..++|+|.+++++|+|+|+|.+++++.|+++||..|..++.++
T Consensus 230 v~e~i~~l~~~lr~~r~------~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a~~vL~hr 289 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPD------APYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYD 289 (500)
T ss_dssp HHHHHHHHHHHHHHCSS------SCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGGGGTSCSS
T ss_pred HHHHHHHHHHHhhcCCC------CCccchhHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhhcC
Confidence 88888888877665432 2357999999999999999999999999999999655555443
No 8
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.83 E-value=7.5e-20 Score=199.38 Aligned_cols=237 Identities=19% Similarity=0.208 Sum_probs=168.0
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccC----------
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSS---------- 425 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss---------- 425 (794)
.+|+|++.+++++.++++.+... |+||+||||||||++++++++.+++..+..+....
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~------------~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIG------------GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDW 91 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGC------------CEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTT
T ss_pred hhccChHHHHHHHHHHhhCCCCc------------eEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccch
Confidence 35889999999988877754321 79999999999999999999998864332221000
Q ss_pred -----------------------cccccccc--ccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhcc
Q 003809 426 -----------------------AAGLTASV--AKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQ 480 (794)
Q Consensus 426 -----------------------~~gLt~~v--~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~ 480 (794)
...+++.. .+....+.+...+|.+..+++|++||||+++++++.+..|+.+|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 92 ATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp CCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred hhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 00111110 00001133556788888899999999999999999999999999999
Q ss_pred EEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccC-cccccCcc----------------------------ccHHH
Q 003809 481 TISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKK-HEDALAPA----------------------------FTTAQ 531 (794)
Q Consensus 481 ~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~-~~~~~~~~----------------------------~~~~~ 531 (794)
.+.+...|.....+.++.+|+|+||..+++++..--+. ..-.+.++ .+...
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMD 251 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHH
Confidence 99999899988999999999999997644332100000 00001111 11223
Q ss_pred HHHHHHHHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 532 LKRYIAYAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 532 lr~yi~~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
+++++.+++. ....+++++.+.|.+++...+.. ++|.+.+++++|.++|.+++++.|+.+||.+|+
T Consensus 252 ~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~------------~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~ 319 (350)
T 1g8p_A 252 IRNQILEARERLPKVEAPNTALYDCAALCIALGSD------------GLRGELTLLRSARALAALEGATAVGRDHLKRVA 319 (350)
T ss_dssp HHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSC------------SHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC------------CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 3456655653 23479999999999888765321 679999999999999999999999999999999
Q ss_pred HHHhhhc
Q 003809 610 RLLKTSV 616 (794)
Q Consensus 610 ~L~~~s~ 616 (794)
.++...-
T Consensus 320 ~~~l~~r 326 (350)
T 1g8p_A 320 TMALSHR 326 (350)
T ss_dssp HHHHGGG
T ss_pred HHHHhhc
Confidence 9865443
No 9
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.75 E-value=4.7e-18 Score=199.92 Aligned_cols=232 Identities=20% Similarity=0.267 Sum_probs=167.8
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcce----eecCCc--------
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSV----YTSGKS-------- 423 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~----~~~g~~-------- 423 (794)
..++|++.+++.+.+++..|. +++|+||||||||+|+++++..+++.. ...+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~--------------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i 106 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR--------------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRI 106 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC--------------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEE
T ss_pred ceEECchhhHhhccccccCCC--------------EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcE
Confidence 358899999999999998885 899999999999999999999987542 110000
Q ss_pred ----------------------------------------------------------cCccccccccccCC------CC
Q 003809 424 ----------------------------------------------------------SSAAGLTASVAKEP------ET 439 (794)
Q Consensus 424 ----------------------------------------------------------ss~~gLt~~v~~d~------~~ 439 (794)
.+...|++.+..++ .+
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 00111222221111 11
Q ss_pred c-ccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecce----------EEeecCceEEEEecCCCCC
Q 003809 440 G-EFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGI----------QATLNARTSILAAANPAGG 508 (794)
Q Consensus 440 g-~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~----------~~~l~ar~siiAaaNP~~G 508 (794)
+ ...+.+|.+..|++|+|||||++.|++..+..|+++|+++.+.+. |. ....+.++.||+|+||...
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred cccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHH
Confidence 1 223578999999999999999999999999999999999998876 33 4567889999999998621
Q ss_pred -CCCCCCCccCcc------ccc--CccccHHHHHHHHHHHhc------cCCcCCHHHHHHHHHHHHHhccCCCCCCCccc
Q 003809 509 -RYDKSKPLKKHE------DAL--APAFTTAQLKRYIAYAKT------LKPKLSLEARKLLVDSYVALRRGDTTPGSRVA 573 (794)
Q Consensus 509 -ryd~~~~l~~~~------~~~--~~~~~~~~lr~yi~~ar~------~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~ 573 (794)
.+++ .+..+- -.+ ......+.++.|+.+..+ ..|.++++|...|.++|..+-.. +..
T Consensus 265 ~~l~~--~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~------r~~ 336 (604)
T 3k1j_A 265 DKMHP--ALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGR------KGH 336 (604)
T ss_dssp HHSCH--HHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCS------TTE
T ss_pred hhcCH--HHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcc------ccc
Confidence 1111 111000 000 012345667777765542 34789999999999999765322 235
Q ss_pred cccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 574 YRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 574 ~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
+++++|+|.+++|.|.++|+.+.++.|+.+||.+|+..
T Consensus 337 l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 337 LTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 67899999999999999999999999999999999964
No 10
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.54 E-value=1.1e-14 Score=155.46 Aligned_cols=250 Identities=16% Similarity=0.195 Sum_probs=146.5
Q ss_pred HHhhhhcCCceechhhHHHHHHHHHhCCcccc-cCCCc-ccccceeEEEeCCCcchHHHHHHHHHhhCCcceeec-CCcc
Q 003809 348 NKIVDSIGPTVFGHQDIKRAILLMLLGGVHKL-THEGI-NLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTS-GKSS 424 (794)
Q Consensus 348 ~~l~~si~p~I~G~e~vK~alll~L~gg~~~~-~~~g~-~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~-g~~s 424 (794)
+.+.+++.+.|+|++.+|+++..++.....+. ...+. .-+..-++||+||||||||++++++++.++..++.. ....
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 45666778889999999999988876521000 00000 001223899999999999999999999886654431 1111
Q ss_pred CccccccccccCCCCcccccccCceeec-CCCeEEecccccCChhh------------HHHHHHHhhccEEEEeecceEE
Q 003809 425 SAAGLTASVAKEPETGEFCIEAGALMLA-DNGICCIDEFDKMDIRD------------QVAIHEAMEQQTISITKAGIQA 491 (794)
Q Consensus 425 s~~gLt~~v~~d~~~g~~~~~~Gal~la-d~GIl~IDE~dk~~~~~------------~~~L~eame~~~isi~kaG~~~ 491 (794)
...++.+.-.......-+...+|.+..+ .++|+||||++++.+.. +..|+.+|+.+.+... .| .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~-~~--~ 163 (310)
T 1ofh_A 87 TEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTK-HG--M 163 (310)
T ss_dssp SSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEET-TE--E
T ss_pred ccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecc-cc--c
Confidence 1112211100000000011123444444 47899999999998776 8899999998877653 23 2
Q ss_pred eecCceEEEEecCCCC---CCCCCCCCcc-Cccc-ccCccccHHHHHHHHHH------------Hh--ccCCcCCHHHHH
Q 003809 492 TLNARTSILAAANPAG---GRYDKSKPLK-KHED-ALAPAFTTAQLKRYIAY------------AK--TLKPKLSLEARK 552 (794)
Q Consensus 492 ~l~ar~siiAaaNP~~---Gryd~~~~l~-~~~~-~~~~~~~~~~lr~yi~~------------ar--~~~P~ls~ea~~ 552 (794)
..+.++.+|+++|+.. ..+++ .+. +.+. ..-++++.+.+..++.. ++ ...+.+++++.+
T Consensus 164 ~~~~~~~~i~~~~~~~~~~~~l~~--~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVARPSDLIP--ELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVK 241 (310)
T ss_dssp EECTTCEEEEEECCSSSCGGGSCH--HHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHH
T ss_pred ccCCcEEEEEcCCcccCCcccCCH--HHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHH
Confidence 2345788999876432 11110 011 0011 11234566666666541 11 234579999999
Q ss_pred HHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCC------CcCHHHHHHHHH
Q 003809 553 LLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLET------QVHPRHVRVAVR 610 (794)
Q Consensus 553 ~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~------~V~~~dv~eAi~ 610 (794)
.|.++....+.... ..++|++.++++.+-+.+.+.... .|+.+||.+|+.
T Consensus 242 ~l~~~~~~~~~~~~--------~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 242 KIAEAAFRVNEKTE--------NIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp HHHHHHHHHHHHSC--------CCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred HHHHHhhhhccccc--------ccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHH
Confidence 99988765433211 235699999988765444332221 499999998875
No 11
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.53 E-value=6.4e-14 Score=152.21 Aligned_cols=218 Identities=17% Similarity=0.185 Sum_probs=142.9
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCC-ccCccccccc
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK-SSSAAGLTAS 432 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~-~ss~~gLt~~ 432 (794)
-+.+++|++.+++.+...+........ ...|+||+||||||||++++++++.+...++.... .....
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~-------~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~----- 94 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNE-------CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS----- 94 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTS-------CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCC-------CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch-----
Confidence 345689999999888776654311000 11289999999999999999999987765443211 00000
Q ss_pred cccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecc------eEEeecCceEEEEecCCC
Q 003809 433 VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAG------IQATLNARTSILAAANPA 506 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG------~~~~l~ar~siiAaaNP~ 506 (794)
+. +.......+++|++||||++.+++..+..|+.+|+++.+.+..++ ....++ ++.+|+|+|+.
T Consensus 95 -------~~--~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~ 164 (338)
T 3pfi_A 95 -------GD--LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRA 164 (338)
T ss_dssp -------HH--HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCG
T ss_pred -------hH--HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCc
Confidence 10 111111246789999999999999999999999999887654221 122333 68999999975
Q ss_pred CCCCCCCCCccCc--ccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHH
Q 003809 507 GGRYDKSKPLKKH--EDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEA 583 (794)
Q Consensus 507 ~Gryd~~~~l~~~--~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~Les 583 (794)
.. +++ .+..+ ....-+.++.+.+..++... +.....+++++.+.|.. .++-++|.+..
T Consensus 165 ~~-l~~--~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~----------------~~~G~~r~l~~ 225 (338)
T 3pfi_A 165 GM-LSN--PLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK----------------RSRSTPRIALR 225 (338)
T ss_dssp GG-SCH--HHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH----------------TTTTCHHHHHH
T ss_pred cc-cCH--HHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH----------------HHCcCHHHHHH
Confidence 31 111 01101 01111345667766666533 34566788888887754 23456899999
Q ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 584 LIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 584 liRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
+++.+...|.+.....|+.+|+..++..+
T Consensus 226 ~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 226 LLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 99999989999999999999999998764
No 12
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.48 E-value=4.2e-14 Score=156.45 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=83.7
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCccccc---------------C---CCcccccceeEEEeCCCcchHHHHHHHHHh
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKLT---------------H---EGINLRGDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~~---------------~---~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
+.+.+...|+|++.+|++|..++........ + .+...++..|+||+||||||||++++++++
T Consensus 15 l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 15 LKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4444556789999999999988742211100 0 000123445899999999999999999999
Q ss_pred hCCcceeecCC-ccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChh--------------hHHHHHHH
Q 003809 412 IVPRSVYTSGK-SSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR--------------DQVAIHEA 476 (794)
Q Consensus 412 ~~p~~~~~~g~-~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~--------------~~~~L~ea 476 (794)
.+...++.... .....++.+..........+....|.+..+.+||+||||++++... .+++|+.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ 174 (376)
T 1um8_A 95 HLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 174 (376)
T ss_dssp HTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHH
T ss_pred HhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHH
Confidence 98765543211 1111222221110000111112345556678999999999999988 89999999
Q ss_pred hhccEEEEeecceEEeecCceEEEEecC
Q 003809 477 MEQQTISITKAGIQATLNARTSILAAAN 504 (794)
Q Consensus 477 me~~~isi~kaG~~~~l~ar~siiAaaN 504 (794)
|+.+.+.+...|.....+.++.+++|+|
T Consensus 175 le~~~~~~~~~~~~~~~~~~~~~i~t~n 202 (376)
T 1um8_A 175 VEGSLVNIPPKGGRKHPEGNFIQIDTSD 202 (376)
T ss_dssp HHCCEEC---------------CEECTT
T ss_pred hhccceecccccccccCCcceEEEecCC
Confidence 9999887766665554444443333333
No 13
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.47 E-value=5.1e-14 Score=151.78 Aligned_cols=195 Identities=18% Similarity=0.238 Sum_probs=124.9
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcc---e-ee-cCCccCccccccc----cccCCCCcccccccCceeecCCCeEEec
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRS---V-YT-SGKSSSAAGLTAS----VAKEPETGEFCIEAGALMLADNGICCID 460 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~---~-~~-~g~~ss~~gLt~~----v~~d~~~g~~~~~~Gal~lad~GIl~ID 460 (794)
.+|||+|+||||||+++++++..+++. + +. ++. ....+..+ ..+...+|......|.+..|++|++|||
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~--~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LD 103 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA--LNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 103 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS--CCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC--CChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEe
Confidence 389999999999999999999987653 1 11 211 11111111 0111233444456788888999999999
Q ss_pred ccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccC-cccccCcccc-----
Q 003809 461 EFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKK-HEDALAPAFT----- 528 (794)
Q Consensus 461 E~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~-~~~~~~~~~~----- 528 (794)
|++.|+...|..|+.+|+++.+. +.|.....+.++.+|+|+|+.. |+|+...--+. .-...-|++.
T Consensus 104 Ei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~ed 181 (304)
T 1ojl_A 104 EIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRRED 181 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGG
T ss_pred ccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhh
Confidence 99999999999999999998764 4576677788999999999862 55543111000 0000012222
Q ss_pred -HHHHHHHHHHH-hc---cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHH
Q 003809 529 -TAQLKRYIAYA-KT---LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPR 603 (794)
Q Consensus 529 -~~~lr~yi~~a-r~---~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~ 603 (794)
...++.|+... +. -.+.+++++.+.|..| .|+-++|+|+++++.+...|. ...|+.+
T Consensus 182 i~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~---------------~wpGnvReL~~~l~~~~~~~~---~~~i~~~ 243 (304)
T 1ojl_A 182 IPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY---------------DWPGNIRELENAIERAVVLLT---GEYISER 243 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC---------------CCSSHHHHHHHHHHHHHHHCC---SSSBCGG
T ss_pred HHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC---------------CCCCCHHHHHHHHHHHHHhCC---CCcccHH
Confidence 12344444322 22 2367999998888652 478889999999987766543 4466666
Q ss_pred HHH
Q 003809 604 HVR 606 (794)
Q Consensus 604 dv~ 606 (794)
|+.
T Consensus 244 ~l~ 246 (304)
T 1ojl_A 244 ELP 246 (304)
T ss_dssp GSC
T ss_pred hhh
Confidence 653
No 14
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.44 E-value=2.7e-13 Score=142.38 Aligned_cols=207 Identities=15% Similarity=0.198 Sum_probs=117.9
Q ss_pred CceechhhHHHHHHHHHh--CCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc----eeecCCccCcccc
Q 003809 356 PTVFGHQDIKRAILLMLL--GGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS----VYTSGKSSSAAGL 429 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~--gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~----~~~~g~~ss~~gL 429 (794)
..++|++...+.++-.+. ... +.++||+|+||||||+++++++..+++. ++..... ....+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~------------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~-~~~~~ 72 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPL------------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA-LNENL 72 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTS------------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG-SCHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCC------------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC-CChhH
Confidence 346687766555543222 211 1289999999999999999999988642 2221110 10111
Q ss_pred cc-ccc---cCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCC
Q 003809 430 TA-SVA---KEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANP 505 (794)
Q Consensus 430 t~-~v~---~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP 505 (794)
.. .+. +...+|......|.+..+++|++||||++.++...|..|+.+|+++.+. +.|.....+.++.+|+|+|+
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEEC--CCCC--CEECCCEEEEEESS
T ss_pred HHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCee--cCCCcccccCCeEEEEecCc
Confidence 00 010 1112232223567777788999999999999999999999999999764 44666666778999999998
Q ss_pred CC------CCCCCCCCccC-cccccCccccH--HHHH----HHHHH-Hhcc--C--CcCCHHHHHHHHHHHHHhccCCCC
Q 003809 506 AG------GRYDKSKPLKK-HEDALAPAFTT--AQLK----RYIAY-AKTL--K--PKLSLEARKLLVDSYVALRRGDTT 567 (794)
Q Consensus 506 ~~------Gryd~~~~l~~-~~~~~~~~~~~--~~lr----~yi~~-ar~~--~--P~ls~ea~~~L~~~Y~~lR~~~~~ 567 (794)
.. |+|.+..--+. .-...-|++.. +++. .|+.. ++.. . +.+++++.+.|..
T Consensus 151 ~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~----------- 219 (265)
T 2bjv_A 151 DLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLN----------- 219 (265)
T ss_dssp CHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHH-----------
T ss_pred CHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHh-----------
Confidence 63 33321100000 00001122221 2332 33322 2222 2 4789988888764
Q ss_pred CCCccccccCHHHHHHHHHHHHHHH
Q 003809 568 PGSRVAYRMTVRQLEALIRLSEAIA 592 (794)
Q Consensus 568 ~~~~~~~~iT~R~LesliRlseA~A 592 (794)
..|+.++|+|.++++.+.+.+
T Consensus 220 ----~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 220 ----YRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp ----SCCTTHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCCHHHHHHHHHHHHHhC
Confidence 246778899999988765544
No 15
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.37 E-value=1.1e-13 Score=152.55 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=79.8
Q ss_pred hhhcCCceechhhHHHHHHHHHhCCcccccCC---CcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCcc-Cc
Q 003809 351 VDSIGPTVFGHQDIKRAILLMLLGGVHKLTHE---GINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSS-SA 426 (794)
Q Consensus 351 ~~si~p~I~G~e~vK~alll~L~gg~~~~~~~---g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~s-s~ 426 (794)
...+...|+|++.+|+.+..++.......... ...-...-|+||+||||||||++++++++.+...++...... ..
T Consensus 10 ~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 10 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 89 (363)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcc
Confidence 33344468999999999888774221110000 000112348999999999999999999999876655422111 11
Q ss_pred cccccccccCCCCcccccccCceeecCCCeEEecccccCChh--------------hHHHHHHHhhccEEEEe
Q 003809 427 AGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIR--------------DQVAIHEAMEQQTISIT 485 (794)
Q Consensus 427 ~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~--------------~~~~L~eame~~~isi~ 485 (794)
.++.+........+.+...+|.+..+.+||+||||++++++. .++.|+++|+...+.+.
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~ 162 (363)
T 3hws_A 90 AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVP 162 (363)
T ss_dssp CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-----
T ss_pred cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeecc
Confidence 122221100000111222344455667899999999999887 89999999995544443
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.36 E-value=2e-11 Score=131.23 Aligned_cols=219 Identities=17% Similarity=0.163 Sum_probs=139.4
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCCccCc-ccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSSA-AGLTASV 433 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss~-~gLt~~v 433 (794)
.+++|++.++..+.-.+....... +...++||+||||||||++++++++.+...++. .+..... ..+...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~- 83 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAI- 83 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHH-
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHH-
Confidence 467898888777655543211000 012289999999999999999999977654432 1111000 001100
Q ss_pred ccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecc-----eEEeecCceEEEEecCCCCC
Q 003809 434 AKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAG-----IQATLNARTSILAAANPAGG 508 (794)
Q Consensus 434 ~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG-----~~~~l~ar~siiAaaNP~~G 508 (794)
+. + .++++|++||||++.++...+..|+.+|+++.+.+.-.. .......++.+|+|+|...
T Consensus 84 ----------l~-~--~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~- 149 (324)
T 1hqc_A 84 ----------LA-N--SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG- 149 (324)
T ss_dssp ----------HT-T--TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS-
T ss_pred ----------HH-H--hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc-
Confidence 00 0 136789999999999999999999999999887764111 1111234789999999763
Q ss_pred CCCCCCCccCcccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHH
Q 003809 509 RYDKSKPLKKHEDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRL 587 (794)
Q Consensus 509 ryd~~~~l~~~~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRl 587 (794)
.++....-+......-+.++.+++..++... ......+++++.+.|..+ .+-++|.+..+++.
T Consensus 150 ~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~----------------~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 150 LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRR----------------SRGTMRVAKRLFRR 213 (324)
T ss_dssp SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH----------------SCSCHHHHHHHHHH
T ss_pred cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----------------ccCCHHHHHHHHHH
Confidence 3322211110001112345666777666543 345667899988888663 12357999999999
Q ss_pred HHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 588 SEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 588 seA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
+...|.+.....|+.+|+..++..+
T Consensus 214 ~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 214 VRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 8888888888899999999988654
No 17
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.34 E-value=1.2e-12 Score=145.90 Aligned_cols=198 Identities=18% Similarity=0.263 Sum_probs=132.4
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCccCcc-----ccccccccCCCCcccccccCceeecCCCeEEecc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKSSSAA-----GLTASVAKEPETGEFCIEAGALMLADNGICCIDE 461 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ss~~-----gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE 461 (794)
.++||.|++||||+.++++++..+++. +.......... .|++. .+...+|.....+|.+..|++|++||||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~-~~g~~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY-EKGAFTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCB-CTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCC-CCCCCCCcccccCCceeeCCCcEEEEcC
Confidence 489999999999999999999998753 22211111111 12221 2223455555678999999999999999
Q ss_pred cccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC------CCCCCCCCCccCcc-cccCcccc-----H
Q 003809 462 FDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA------GGRYDKSKPLKKHE-DALAPAFT-----T 529 (794)
Q Consensus 462 ~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~------~Gryd~~~~l~~~~-~~~~~~~~-----~ 529 (794)
++.|++..|..|+++|+++.+.. .|.....+.++.+|+|||.. .|+|....-.+... ...-|++. .
T Consensus 240 i~~l~~~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di 317 (387)
T 1ny5_A 240 IGELSLEAQAKLLRVIESGKFYR--LGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDI 317 (387)
T ss_dssp GGGCCHHHHHHHHHHHHHSEECC--BTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHH
T ss_pred hhhCCHHHHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccH
Confidence 99999999999999999998764 36666777889999999985 36664322111000 00012221 1
Q ss_pred -HHHHHHHH-HHhcc---CCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHH
Q 003809 530 -AQLKRYIA-YAKTL---KPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRH 604 (794)
Q Consensus 530 -~~lr~yi~-~ar~~---~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~d 604 (794)
...+.|+. +++.. .+.++++|.+.|.. ..||-++|+|+++++.+-..+. ...|+.+|
T Consensus 318 ~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~---------------~~wpGNvreL~~~i~~~~~~~~---~~~i~~~~ 379 (387)
T 1ny5_A 318 IPLANHFLKKFSRKYAKEVEGFTKSAQELLLS---------------YPWYGNVRELKNVIERAVLFSE---GKFIDRGE 379 (387)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH---------------SCCTTHHHHHHHHHHHHHHHCC---SSEECHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh---------------CCCCcHHHHHHHHHHHHHHhCC---CCcCcHHH
Confidence 12333433 23322 24689999988865 2688999999999988776553 45788888
Q ss_pred HHHH
Q 003809 605 VRVA 608 (794)
Q Consensus 605 v~eA 608 (794)
+-..
T Consensus 380 l~~~ 383 (387)
T 1ny5_A 380 LSCL 383 (387)
T ss_dssp HHHH
T ss_pred CcHh
Confidence 8543
No 18
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.33 E-value=1.3e-12 Score=139.82 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=95.0
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc---eeecCCc
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS---VYTSGKS 423 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~---~~~~g~~ 423 (794)
+..+.+.+...++|++.+++.+..++..+.... .. .-+..-++||+||||||||++++++++.+.+. ++.....
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~-~~--~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRAVADAIRRARAGL-KD--PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTC-SC--TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CC--CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 345666777789999999998887776542100 00 01122389999999999999999999986432 2211110
Q ss_pred cCcccc-ccccccCC--CCcc--cccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceE
Q 003809 424 SSAAGL-TASVAKEP--ETGE--FCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTS 498 (794)
Q Consensus 424 ss~~gL-t~~v~~d~--~~g~--~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~s 498 (794)
...... .......+ ..+. ...-.+++..+.+|++||||++++++..+..|+.+|+++.+... .|....+. ++.
T Consensus 85 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~~-~~i 162 (311)
T 4fcw_A 85 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDS-HGRTVDFR-NTV 162 (311)
T ss_dssp GCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECT-TSCEEECT-TEE
T ss_pred cccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcC-CCCEEECC-CcE
Confidence 000000 00011000 0010 00112334445678999999999999999999999999988743 23333332 577
Q ss_pred EEEecCCC
Q 003809 499 ILAAANPA 506 (794)
Q Consensus 499 iiAaaNP~ 506 (794)
+|+|+|+.
T Consensus 163 iI~ttn~~ 170 (311)
T 4fcw_A 163 IIMTSNLG 170 (311)
T ss_dssp EEEEESTT
T ss_pred EEEecccC
Confidence 99999983
No 19
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.30 E-value=7.6e-12 Score=138.78 Aligned_cols=174 Identities=14% Similarity=0.171 Sum_probs=104.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccccccCCCCcccccccCceeec---CCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk 464 (794)
.+||+||||||||+|+++++..+...++.... .+...|-+...++. .+..| ...|+||||+|.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~-----------lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE-----------LFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHH-----------HHHHHHHTCSEEEEEESSSC
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHH-----------HHHHHHHhCCceEeeecchh
Confidence 59999999999999999999998877664211 11112222222211 11111 247999999997
Q ss_pred CChh--------------hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCccc
Q 003809 465 MDIR--------------DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHED 521 (794)
Q Consensus 465 ~~~~--------------~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~ 521 (794)
+... ....|+..|+.-. -..++.||||||.+ +||||....+.
T Consensus 253 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~---- 317 (405)
T 4b4t_J 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----------TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP---- 317 (405)
T ss_dssp CTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----------CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECC----
T ss_pred hccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----------CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcC----
Confidence 6321 1234555554211 12368899999976 36776655544
Q ss_pred ccCccccHHHHHHHH--HHHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCC
Q 003809 522 ALAPAFTTAQLKRYI--AYAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLE 597 (794)
Q Consensus 522 ~~~~~~~~~~lr~yi--~~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~ 597 (794)
++...-|.-| .+.+. +.+.+. .+.|. ..+-++|.++|.++++-|.-.|.-+.+
T Consensus 318 -----lPd~~~R~~Il~~~~~~~~l~~dvd---l~~lA---------------~~t~G~SGADi~~l~~eA~~~Air~~~ 374 (405)
T 4b4t_J 318 -----PPSVAARAEILRIHSRKMNLTRGIN---LRKVA---------------EKMNGCSGADVKGVCTEAGMYALRERR 374 (405)
T ss_dssp -----CCCHHHHHHHHHHHHTTSBCCSSCC---HHHHH---------------HHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----CcCHHHHHHHHHHHhcCCCCCccCC---HHHHH---------------HHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2222212111 11222 122222 11121 223468999999999999888888889
Q ss_pred CCcCHHHHHHHHHHHh
Q 003809 598 TQVHPRHVRVAVRLLK 613 (794)
Q Consensus 598 ~~V~~~dv~eAi~L~~ 613 (794)
..|+.+|+..|++-+.
T Consensus 375 ~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 375 IHVTQEDFELAVGKVM 390 (405)
T ss_dssp SBCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999997543
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=6.1e-12 Score=133.09 Aligned_cols=218 Identities=16% Similarity=0.154 Sum_probs=119.2
Q ss_pred ceechhhHHHHHHHHHhCCccc-ccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVHK-LTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAK 435 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~-~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~ 435 (794)
+|.|++.+|+.|.-.+...... .......++..-++||+||||||||++++++++.+...++.... ..+....
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~----~~~~~~~-- 91 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG----SELVKKF-- 91 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG----GGGCCCS--
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh----HHHHHhc--
Confidence 4778887777765444211000 00000001222379999999999999999999998766553211 1111110
Q ss_pred CCCCcccc-cccCcee---ecCCCeEEecccccC-----------ChhhHHHHHHHhhccEEEEeecceEEeecCceEEE
Q 003809 436 EPETGEFC-IEAGALM---LADNGICCIDEFDKM-----------DIRDQVAIHEAMEQQTISITKAGIQATLNARTSIL 500 (794)
Q Consensus 436 d~~~g~~~-~~~Gal~---lad~GIl~IDE~dk~-----------~~~~~~~L~eame~~~isi~kaG~~~~l~ar~sii 500 (794)
.|... .....+. ....+|+||||++.+ +...+..+...++... + ...+.++.+|
T Consensus 92 ---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~~~vI 160 (285)
T 3h4m_A 92 ---IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD------G--FDARGDVKII 160 (285)
T ss_dssp ---TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH------T--TCSSSSEEEE
T ss_pred ---cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh------C--CCCCCCEEEE
Confidence 01000 0000111 113469999999987 4455666666654321 0 0123468999
Q ss_pred EecCCCC---------CCCCCCCCccCcccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCC
Q 003809 501 AAANPAG---------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGS 570 (794)
Q Consensus 501 AaaNP~~---------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~ 570 (794)
+|+|+.. +||+....+ +..+.+....++... +..... .+.....|.
T Consensus 161 ~ttn~~~~l~~~l~~~~Rf~~~i~~--------~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~--------------- 216 (285)
T 3h4m_A 161 GATNRPDILDPAILRPGRFDRIIEV--------PAPDEKGRLEILKIHTRKMNLA-EDVNLEEIA--------------- 216 (285)
T ss_dssp EECSCGGGBCHHHHSTTSEEEEEEC--------CCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHH---------------
T ss_pred EeCCCchhcCHHHcCCCcCCeEEEE--------CCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHH---------------
Confidence 9999752 233221111 123344434333221 211110 110111111
Q ss_pred ccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhh
Q 003809 571 RVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTS 615 (794)
Q Consensus 571 ~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s 615 (794)
....+.++|.+..+++.|...|..+.++.|+.+|+.+|+.-+...
T Consensus 217 ~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 217 KMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 112356899999999999999999999999999999999876543
No 21
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.30 E-value=3e-12 Score=141.62 Aligned_cols=186 Identities=21% Similarity=0.264 Sum_probs=124.1
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcc--eeecCCccCccccccc----cccCCCCcccccccCceeecCCCeEEecccc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRS--VYTSGKSSSAAGLTAS----VAKEPETGEFCIEAGALMLADNGICCIDEFD 463 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~--~~~~g~~ss~~gLt~~----v~~d~~~g~~~~~~Gal~lad~GIl~IDE~d 463 (794)
.++|+.|++||||+.++++++..+++. +...........+..+ ..+...+|.....+|.+..|++|++||||++
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~ 232 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVG 232 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChh
Confidence 379999999999999999999988764 2221111112122111 1223345555567899999999999999999
Q ss_pred cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC------CCCCCCCCccCcc-cccCccc-----c-HH
Q 003809 464 KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG------GRYDKSKPLKKHE-DALAPAF-----T-TA 530 (794)
Q Consensus 464 k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~------Gryd~~~~l~~~~-~~~~~~~-----~-~~ 530 (794)
.|++..|..|+.+|+++.+... |.....+.++.+|+|||... |+|....-.+... ...-|++ + ..
T Consensus 233 ~l~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~ 310 (368)
T 3dzd_A 233 ELDQRVQAKLLRVLETGSFTRL--GGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVIL 310 (368)
T ss_dssp GSCHHHHHHHHHHHHHSEECCB--TCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHH
T ss_pred hCCHHHHHHHHHHHHhCCcccC--CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHH
Confidence 9999999999999999987644 66666788999999999763 5654321110000 0001111 1 12
Q ss_pred HHHHHHHH-Hhc---cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHH
Q 003809 531 QLKRYIAY-AKT---LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIA 592 (794)
Q Consensus 531 ~lr~yi~~-ar~---~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~A 592 (794)
.++.|+.. ++. -.+.++++|.+.|.. ..||-++|+|+++++.+...+
T Consensus 311 l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~---------------~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 311 LAEYFLKKFAKEYKKNCFELSEETKEYLMK---------------QEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHHHHHHHTTCCCCCBCHHHHHHHHT---------------CCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCcCHHHHHHHHh---------------CCCCcHHHHHHHHHHHHHHhC
Confidence 23444432 222 235799999988864 368999999999998776543
No 22
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.28 E-value=8.4e-12 Score=133.46 Aligned_cols=230 Identities=12% Similarity=0.137 Sum_probs=132.9
Q ss_pred HHhhhhcCCceechhhHHHHHHHHHhCCc--ccccCCCcc-cccceeEEEeCCCcchHHHHHHHHHhhCCcc-------e
Q 003809 348 NKIVDSIGPTVFGHQDIKRAILLMLLGGV--HKLTHEGIN-LRGDINVCIVGDPSCAKSQFLKYAAGIVPRS-------V 417 (794)
Q Consensus 348 ~~l~~si~p~I~G~e~vK~alll~L~gg~--~~~~~~g~~-~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~-------~ 417 (794)
..+...+..+|+|++.+|+.+.-.+.... ......|.. -++..|+||+||||||||++++++++.+... +
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~ 102 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL 102 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE
Confidence 34555566689999999988763322100 000000000 1233489999999999999999998876321 1
Q ss_pred eecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccC---------ChhhHHHHHHHhhccEEEEeecc
Q 003809 418 YTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKM---------DIRDQVAIHEAMEQQTISITKAG 488 (794)
Q Consensus 418 ~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~---------~~~~~~~L~eame~~~isi~kaG 488 (794)
+.. +...+..... +.......+.+..+.++|+||||++.+ +...+..|+..|+++
T Consensus 103 ~~~----~~~~l~~~~~----g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-------- 166 (309)
T 3syl_A 103 VSV----TRDDLVGQYI----GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-------- 166 (309)
T ss_dssp EEE----CGGGTCCSST----TCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC--------
T ss_pred EEE----cHHHhhhhcc----cccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC--------
Confidence 111 1111111110 000001133445567899999999977 788889999999864
Q ss_pred eEEeecCceEEEEecCCCC-CCC-CCCCCccCc--ccccCccccHHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhcc
Q 003809 489 IQATLNARTSILAAANPAG-GRY-DKSKPLKKH--EDALAPAFTTAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRR 563 (794)
Q Consensus 489 ~~~~l~ar~siiAaaNP~~-Gry-d~~~~l~~~--~~~~~~~~~~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~ 563 (794)
+.++.+|+++|+.. ..| .....+..+ ....-+.++.+.+..++.. ++.....+++++.+.+..+....+.
T Consensus 167 -----~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 241 (309)
T 3syl_A 167 -----RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRN 241 (309)
T ss_dssp -----TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTT
T ss_pred -----CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 24678888888642 000 001111100 0111234566777766643 3456678999999999988776643
Q ss_pred CCCCCCCccccccCHHHHHHHHHHHHHHHHhc----CCCCcCHHHHH
Q 003809 564 GDTTPGSRVAYRMTVRQLEALIRLSEAIARSH----LETQVHPRHVR 606 (794)
Q Consensus 564 ~~~~~~~~~~~~iT~R~LesliRlseA~Arl~----~~~~V~~~dv~ 606 (794)
. .++.++|.+.++++.+...+..+ ....++.+|+.
T Consensus 242 ~--------~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 242 Q--------PHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp S--------SSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred C--------CCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 3 35567899999998776544333 23456666543
No 23
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=2e-11 Score=137.31 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=104.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccccccCCCCcccccccCceee---cCCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTASVAKEPETGEFCIEAGALML---ADNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~v~~d~~~g~~~~~~Gal~l---ad~GIl~IDE~dk 464 (794)
.+||+||||||||+|+++++..+...++.... .+...|-+...++. .+.. ....|+||||+|.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~-----------~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE-----------MFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHH-----------HHHHHHHSCSEEEEEECCCS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHH-----------HHHHHHhcCCceeeeecccc
Confidence 59999999999999999999998877664211 11111111111111 1111 1347999999996
Q ss_pred CChh--------------hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCccc
Q 003809 465 MDIR--------------DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHED 521 (794)
Q Consensus 465 ~~~~--------------~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~ 521 (794)
+... ....|+..|+... -..++.||||||.+. ||||....+.
T Consensus 286 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~---- 350 (437)
T 4b4t_L 286 IGGRRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP---- 350 (437)
T ss_dssp SSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCC----
T ss_pred cccccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEEEEecCCchhhCHHHhCCCccceeeecC----
Confidence 5321 1234666664321 123578999999652 5554443333
Q ss_pred ccCccccHHHHHHHH--HHHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCC
Q 003809 522 ALAPAFTTAQLKRYI--AYAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLE 597 (794)
Q Consensus 522 ~~~~~~~~~~lr~yi--~~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~ 597 (794)
++...-|.-| .+.+. +.+.+.- +.| +..+-++|.++|.++++-|.-.|..+.+
T Consensus 351 -----lPd~~~R~~Il~~~~~~~~~~~d~dl---~~l---------------A~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 351 -----LPNEAGRLEIFKIHTAKVKKTGEFDF---EAA---------------VKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp -----CCCHHHHHHHHHHHHHTSCBCSCCCH---HHH---------------HHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----CcCHHHHHHHHHHHhcCCCCCcccCH---HHH---------------HHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2222222211 11222 1222221 112 1224468999999999999889988899
Q ss_pred CCcCHHHHHHHHHHHhhh
Q 003809 598 TQVHPRHVRVAVRLLKTS 615 (794)
Q Consensus 598 ~~V~~~dv~eAi~L~~~s 615 (794)
..|+.+|+.+|++-+..+
T Consensus 408 ~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp SSBCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999866543
No 24
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=9.1e-12 Score=138.66 Aligned_cols=180 Identities=17% Similarity=0.167 Sum_probs=104.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~ 467 (794)
.|||+||||||||+|++++|..+...++.... .+...|-+...++..+.. + ......|+||||+|.+-.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~-----A---r~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKV-----A---GENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHH-----H---HHTCSEEEEEEEESSSSC
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHH-----H---HhcCCcEEEEehhhhhcc
Confidence 69999999999999999999998877664211 111112222111110000 0 001246999999996532
Q ss_pred h-----------hH---HHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCcccccC
Q 003809 468 R-----------DQ---VAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHEDALA 524 (794)
Q Consensus 468 ~-----------~~---~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~~ 524 (794)
. .. ..|+..|+.. .-..++.||||||... ||||....+.
T Consensus 290 ~R~~~~~~~~~~~~~~l~~LL~~lDg~-----------~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~------- 351 (437)
T 4b4t_I 290 KRYDSNSGGEREIQRTMLELLNQLDGF-----------DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFE------- 351 (437)
T ss_dssp CCSCSSCSSCCHHHHHHHHHHHHHHHC-----------CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCC-------
T ss_pred cCCCCCCCccHHHHHHHHHHHHHhhCc-----------CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcC-------
Confidence 1 12 2344444311 1134688999999663 5555444333
Q ss_pred ccccHHHHHHHHH--HHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCc
Q 003809 525 PAFTTAQLKRYIA--YAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQV 600 (794)
Q Consensus 525 ~~~~~~~lr~yi~--~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V 600 (794)
++...-|+-|. +.+. +.+.+.- +.|. ..+.++|.++|.++++-|...|..+.+..|
T Consensus 352 --lPd~~~R~~Il~~~l~~~~l~~dvdl---~~LA---------------~~T~GfSGADI~~l~~eA~~~Air~~~~~I 411 (437)
T 4b4t_I 352 --NPDLSTKKKILGIHTSKMNLSEDVNL---ETLV---------------TTKDDLSGADIQAMCTEAGLLALRERRMQV 411 (437)
T ss_dssp --CCCHHHHHHHHHHHHTTSCBCSCCCH---HHHH---------------HHCCSCCHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred --CcCHHHHHHHHHHHhcCCCCCCcCCH---HHHH---------------HhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 32222222221 1222 2222221 1121 123468999999999999989988899999
Q ss_pred CHHHHHHHHHHHhhhc
Q 003809 601 HPRHVRVAVRLLKTSV 616 (794)
Q Consensus 601 ~~~dv~eAi~L~~~s~ 616 (794)
+.+|+.+|++-+..+.
T Consensus 412 t~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 412 TAEDFKQAKERVMKNK 427 (437)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCC
Confidence 9999999998665543
No 25
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.24 E-value=2.3e-11 Score=146.68 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=100.2
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHH----hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecC-
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLML----LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSG- 421 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L----~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g- 421 (794)
+..+.+.+...|+|++.++..+.-++ .|......+. -|+||+||||||||++++++++.++..++...
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~-------~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~ 521 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPV-------GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCS-------EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCc-------eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEec
Confidence 45567788899999998886665444 3332221122 28999999999999999999999865544211
Q ss_pred -Cc---cCccccccccccCCCCc--ccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecC
Q 003809 422 -KS---SSAAGLTASVAKEPETG--EFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 422 -~~---ss~~gLt~~v~~d~~~g--~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
.. .+...+.+.... ..| +...-.+++..+.+||+||||+++++++.++.|+++|+++.++.. .|....+ .
T Consensus 522 s~~~~~~~~~~l~g~~~g--~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~ 597 (758)
T 1r6b_X 522 SEYMERHTVSRLIGAPPG--YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN-NGRKADF-R 597 (758)
T ss_dssp GGCSSSSCCSSSCCCCSC--SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TTEEEEC-T
T ss_pred hhhcchhhHhhhcCCCCC--CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC-CCCEEec-C
Confidence 10 011122211000 000 000113345566789999999999999999999999999999875 3666666 5
Q ss_pred ceEEEEecCCCC
Q 003809 496 RTSILAAANPAG 507 (794)
Q Consensus 496 r~siiAaaNP~~ 507 (794)
++.||+|+|+..
T Consensus 598 ~~~iI~tsN~~~ 609 (758)
T 1r6b_X 598 NVVLVMTTNAGV 609 (758)
T ss_dssp TEEEEEEECSSC
T ss_pred CeEEEEecCcch
Confidence 799999999843
No 26
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.23 E-value=2.9e-11 Score=135.88 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=105.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~ 467 (794)
.|||+||||||||+|+++++..+...++.... .+...|-+...++..+... ......|+||||+|.+-.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A--------r~~aP~IIfiDEiDai~~ 316 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA--------RTKKACIIFFDEIDAVGG 316 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH--------HHTCSEEEEEECCTTTSB
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH--------HhcCCceEeecccccccc
Confidence 69999999999999999999998877664211 1111222222111100000 011246999999996532
Q ss_pred h--------------hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccC
Q 003809 468 R--------------DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALA 524 (794)
Q Consensus 468 ~--------------~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~ 524 (794)
. ....++..|+.. .-..++.||||||.. +||||....+.
T Consensus 317 ~R~~~~~~~~~~~~~~l~~lL~~lDg~-----------~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~------- 378 (467)
T 4b4t_H 317 ARFDDGAGGDNEVQRTMLELITQLDGF-----------DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS------- 378 (467)
T ss_dssp CCSSSSCGGGGHHHHHHHHHHHHHHSS-----------CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCC-------
T ss_pred cccCcCCCccHHHHHHHHHHHHHhhcc-----------CCCCcEEEEeCCCCcccCChhhhccccccEEEEeC-------
Confidence 1 122344444321 113468899999976 36776655544
Q ss_pred ccccHHHHHHHH--HHHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCc
Q 003809 525 PAFTTAQLKRYI--AYAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQV 600 (794)
Q Consensus 525 ~~~~~~~lr~yi--~~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V 600 (794)
++...-|.-| .+.+. +.+.+.- +.| +..+.++|.++|.++++-|.-.|..+.+..|
T Consensus 379 --lPd~~~R~~Ilk~~l~~~~l~~dvdl---~~L---------------A~~T~GfSGADI~~l~~eAa~~Air~~~~~i 438 (467)
T 4b4t_H 379 --LPDLEGRANIFRIHSKSMSVERGIRW---ELI---------------SRLCPNSTGAELRSVCTEAGMFAIRARRKVA 438 (467)
T ss_dssp --CCCHHHHHHHHHHHHTTSCBCSSCCH---HHH---------------HHHCCSCCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred --CcCHHHHHHHHHHHhcCCCCCCCCCH---HHH---------------HHHCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 2222212211 12222 2222221 111 1123468999999999999888888899999
Q ss_pred CHHHHHHHHHHHhhh
Q 003809 601 HPRHVRVAVRLLKTS 615 (794)
Q Consensus 601 ~~~dv~eAi~L~~~s 615 (794)
+.+|+.+|+.-+..+
T Consensus 439 t~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 439 TEKDFLKAVDKVISG 453 (467)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999765443
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.22 E-value=1.3e-11 Score=140.01 Aligned_cols=204 Identities=15% Similarity=0.178 Sum_probs=126.0
Q ss_pred hcCCceechhhHH---HHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccc
Q 003809 353 SIGPTVFGHQDIK---RAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGL 429 (794)
Q Consensus 353 si~p~I~G~e~vK---~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gL 429 (794)
.-+.+++|++.++ +.+..++..|... ++||+||||||||++++.+++.+...++....... |.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~------------~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~--~~ 88 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLH------------SMILWGPPGTGKTTLAEVIARYANADVERISAVTS--GV 88 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCC------------EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--CH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCc------------EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--CH
Confidence 3345799999988 6777777666421 79999999999999999999998776554211111 10
Q ss_pred ccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEec--CCCC
Q 003809 430 TASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAA--NPAG 507 (794)
Q Consensus 430 t~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaa--NP~~ 507 (794)
..++...... ......+.++|+||||++.++...+..|+..||++. +.+|+++ ||..
T Consensus 89 --~~ir~~~~~a----~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~---------------v~lI~att~n~~~ 147 (447)
T 3pvs_A 89 --KEIREAIERA----RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT---------------ITFIGATTENPSF 147 (447)
T ss_dssp --HHHHHHHHHH----HHHHHTTCCEEEEEETTTCC------CCHHHHHTTS---------------CEEEEEESSCGGG
T ss_pred --HHHHHHHHHH----HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc---------------eEEEecCCCCccc
Confidence 0000000000 000113467899999999999999999999999864 3445555 4321
Q ss_pred CCCCCCCCccCc-ccccCccccHHHHHHHHHHHhc--------cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCH
Q 003809 508 GRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYAKT--------LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTV 578 (794)
Q Consensus 508 Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~ar~--------~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~ 578 (794)
.++ ..+..+ ....-+.++.++++.++..+.. ....+++++.+.|..++ +-++
T Consensus 148 -~l~--~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~----------------~Gd~ 208 (447)
T 3pvs_A 148 -ELN--SALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELV----------------NGDA 208 (447)
T ss_dssp -SSC--HHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHH----------------CSCH
T ss_pred -ccC--HHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHC----------------CCCH
Confidence 111 111111 1111234677777777765532 23568999999887752 2457
Q ss_pred HHHHHHHHHHHHHHHhc--CCCCcCHHHHHHHHH
Q 003809 579 RQLEALIRLSEAIARSH--LETQVHPRHVRVAVR 610 (794)
Q Consensus 579 R~LesliRlseA~Arl~--~~~~V~~~dv~eAi~ 610 (794)
|.+.++++.+...|... ....|+.+||.+++.
T Consensus 209 R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 209 RRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp HHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 99999999888877654 456899999998864
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.22 E-value=1.2e-10 Score=127.53 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=91.0
Q ss_pred CeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC-CCCCCCCCCccCcc-cccCccccHHHH
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA-GGRYDKSKPLKKHE-DALAPAFTTAQL 532 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~-~Gryd~~~~l~~~~-~~~~~~~~~~~l 532 (794)
+|+||||++.|++..++.|+..+++....+. ....+....++++++.. ....++ .+..+- ...-++++.+.+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~----ii~t~~~~~~i~~t~~~~~~~l~~--~l~sR~~~i~~~~~~~~e~ 264 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAPVL----IMATNRGITRIRGTSYQSPHGIPI--DLLDRLLIVSTTPYSEKDT 264 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCCEE----EEEESCSEEECBTSSCEEETTCCH--HHHTTEEEEEECCCCHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCCee----eeecccceeeeeccCCCCcccCCH--HHHhhccEEEecCCCHHHH
Confidence 6999999999999999999999986532211 01111224444444311 111110 111110 111234678888
Q ss_pred HHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 533 KRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 533 r~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
+.++... +.....+++++.+.|..+.. +.++|.+..+++.|...|..+.+..|+.+||.+|+..
T Consensus 265 ~~il~~~~~~~~~~~~~~~l~~l~~~~~---------------~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 265 KQILRIRCEEEDVEMSEDAYTVLTRIGL---------------ETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH---------------HSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhc---------------CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 8877643 34567799999888876432 1467999999999999999999999999999999987
Q ss_pred H
Q 003809 612 L 612 (794)
Q Consensus 612 ~ 612 (794)
+
T Consensus 330 ~ 330 (368)
T 3uk6_A 330 F 330 (368)
T ss_dssp S
T ss_pred h
Confidence 4
No 29
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.22 E-value=1.4e-10 Score=126.28 Aligned_cols=226 Identities=18% Similarity=0.217 Sum_probs=135.7
Q ss_pred hHHHhhhhcCC----ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCccee-ec
Q 003809 346 FFNKIVDSIGP----TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVY-TS 420 (794)
Q Consensus 346 i~~~l~~si~p----~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~-~~ 420 (794)
+|+.++..+-| .++|++.++..+-+.+-.|..... ..-|++|+||||+|||+|++.++..+...+. ++
T Consensus 11 ~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~-------~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~s 83 (334)
T 1in4_A 11 VYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGE-------VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83 (334)
T ss_dssp ------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTC-------CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCC-------CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34444455544 577999998888877754411000 0017999999999999999999998754332 23
Q ss_pred CCccCccccccccccCCCCcccccccCce-eecCCCeEEecccccCChhhHHHHHHHhhccEEEE--eec---ceEEeec
Q 003809 421 GKSSSAAGLTASVAKEPETGEFCIEAGAL-MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISI--TKA---GIQATLN 494 (794)
Q Consensus 421 g~~ss~~gLt~~v~~d~~~g~~~~~~Gal-~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi--~ka---G~~~~l~ 494 (794)
|...... +.. . ..+ .+....|+||||++.+.+..+..|+.+|+...+.+ .+. .......
T Consensus 84 g~~~~~~------------~~l--~-~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 84 GPVLVKQ------------GDM--A-AILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp TTTCCSH------------HHH--H-HHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------
T ss_pred chHhcCH------------HHH--H-HHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 2211100 000 0 000 12346799999999999988889999998654321 100 0011112
Q ss_pred CceEEEEecCCCCCCCCCCCCccCcc--cccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCc
Q 003809 495 ARTSILAAANPAGGRYDKSKPLKKHE--DALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSR 571 (794)
Q Consensus 495 ar~siiAaaNP~~Gryd~~~~l~~~~--~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~ 571 (794)
.++.+++++|+.. ..+ ..+..+- ...-++++.+.+..++... +.....+++++...|...
T Consensus 149 ~~~~li~at~~~~-~Ls--~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~-------------- 211 (334)
T 1in4_A 149 QPFTLVGATTRSG-LLS--SPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKR-------------- 211 (334)
T ss_dssp CCCEEEEEESCGG-GSC--HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHT--------------
T ss_pred CCeEEEEecCCcc-cCC--HHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh--------------
Confidence 3577777777653 111 0111110 0111345677777776544 345567888887777541
Q ss_pred cccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 572 VAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 572 ~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
..-++|.+.++++.+...|.+..+..|+.+++.+|+..+
T Consensus 212 --~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 212 --SRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp --STTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred --cCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 124689999999999999999888899999999999875
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.21 E-value=7.2e-11 Score=123.24 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=113.7
Q ss_pred CceechhhHHHHHHHHH--hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccc
Q 003809 356 PTVFGHQDIKRAILLML--LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASV 433 (794)
Q Consensus 356 p~I~G~e~vK~alll~L--~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v 433 (794)
.+|.|++.+|+.+.-.+ +........ ...+-.-++||+||||||||+++++++..++..++.... ..+....
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~----~~~~~~~ 85 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQK--LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG----SDFVEMF 85 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS----CSSTTSC
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHH--cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH----HHHHHHh
Confidence 46788888887664332 111111111 111223379999999999999999999987654433211 1111110
Q ss_pred ccCCCCcccccccCceeec---CCCeEEecccccCChh--------------hHHHHHHHhhccEEEEeecceEEeecCc
Q 003809 434 AKEPETGEFCIEAGALMLA---DNGICCIDEFDKMDIR--------------DQVAIHEAMEQQTISITKAGIQATLNAR 496 (794)
Q Consensus 434 ~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~~--------------~~~~L~eame~~~isi~kaG~~~~l~ar 496 (794)
.. .+...+ .+.+..+ ..+++||||+|.+... ....++..|+.- .-+.+
T Consensus 86 ~~---~~~~~~-~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~ 150 (257)
T 1lv7_A 86 VG---VGASRV-RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEG 150 (257)
T ss_dssp CC---CCHHHH-HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSC
T ss_pred hh---hhHHHH-HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCCC
Confidence 00 000000 0111112 2369999999876542 223344444321 11346
Q ss_pred eEEEEecCCCC---------CCCCCCCCccCcccccCccccHHHHHHHHHH-HhccCCcCCHHH-HHHHHHHHHHhccCC
Q 003809 497 TSILAAANPAG---------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAY-AKTLKPKLSLEA-RKLLVDSYVALRRGD 565 (794)
Q Consensus 497 ~siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~-ar~~~P~ls~ea-~~~L~~~Y~~lR~~~ 565 (794)
+.+|+|+|+.. |||+....+. ..+.+..+.++.. .+.. | +++++ ...+..
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~--------~P~~~~r~~il~~~~~~~-~-l~~~~~~~~la~--------- 211 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVG--------LPDVRGREQILKVHMRRV-P-LAPDIDAAIIAR--------- 211 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECC--------CCCHHHHHHHHHHHHTTS-C-BCTTCCHHHHHH---------
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeC--------CCCHHHHHHHHHHHHhcC-C-CCccccHHHHHH---------
Confidence 88999999763 2333221111 1123332333221 1221 1 22221 111211
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHh
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLK 613 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~ 613 (794)
...++++|+|..+++-|...|..+.+..|+.+|+.+|+..+.
T Consensus 212 ------~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 212 ------GTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp ------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred ------HcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 122469999999999999999999999999999999998754
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.20 E-value=6.2e-11 Score=131.75 Aligned_cols=219 Identities=16% Similarity=0.137 Sum_probs=124.8
Q ss_pred CceechhhHHHHHHHHHhCCcc-cccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVH-KLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~-~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
-+|+|++.+++.|.-.+..... .....+.. +..-++||+||||||||+++++++..+...++.... ..+.....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~----~~l~~~~~ 189 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA----ASLTSKYV 189 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS----CCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH----HHhhcccc
Confidence 4689999999888766532110 00000111 112489999999999999999999998776654322 11111111
Q ss_pred cCCCCcccccccCcee---ecCCCeEEecccccC-----------ChhhHHHHHHHhhccEEEEeecceEEeecCceEEE
Q 003809 435 KEPETGEFCIEAGALM---LADNGICCIDEFDKM-----------DIRDQVAIHEAMEQQTISITKAGIQATLNARTSIL 500 (794)
Q Consensus 435 ~d~~~g~~~~~~Gal~---lad~GIl~IDE~dk~-----------~~~~~~~L~eame~~~isi~kaG~~~~l~ar~sii 500 (794)
.. ... .....+. ....+|+||||+|.+ ....+..|+..|+.. ....+.++.||
T Consensus 190 g~---~~~-~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~v~vI 256 (389)
T 3vfd_A 190 GE---GEK-LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGV---------QSAGDDRVLVM 256 (389)
T ss_dssp -----CHH-HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHH---------C-----CEEEE
T ss_pred ch---HHH-HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcc---------cccCCCCEEEE
Confidence 00 000 0001111 123479999999988 334455666666532 22234579999
Q ss_pred EecCCCC-------CCCCCCCCccCcccccCccccHHHHHHHHH-HHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCcc
Q 003809 501 AAANPAG-------GRYDKSKPLKKHEDALAPAFTTAQLKRYIA-YAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRV 572 (794)
Q Consensus 501 AaaNP~~-------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~-~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~ 572 (794)
||+|+.. .||+... .-+..+.+..+.++. +++.....+++++...|...
T Consensus 257 ~atn~~~~l~~~l~~R~~~~i--------~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~--------------- 313 (389)
T 3vfd_A 257 GATNRPQELDEAVLRRFIKRV--------YVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARM--------------- 313 (389)
T ss_dssp EEESCGGGCCHHHHTTCCEEE--------ECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHH---------------
T ss_pred EecCCchhcCHHHHcCcceEE--------EcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------------
Confidence 9999853 1222111 112345555555543 33445556777766655431
Q ss_pred ccccCHHHHHHHHHHHHHHHHhcC------------CCCcCHHHHHHHHHHHhhh
Q 003809 573 AYRMTVRQLEALIRLSEAIARSHL------------ETQVHPRHVRVAVRLLKTS 615 (794)
Q Consensus 573 ~~~iT~R~LesliRlseA~Arl~~------------~~~V~~~dv~eAi~L~~~s 615 (794)
..+++.+.+..|++.|...|.-++ ...|+.+|+..|+.-+..+
T Consensus 314 ~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 314 TDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp TTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 234678999999988876665442 3478999999998765544
No 32
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.20 E-value=6.5e-11 Score=118.53 Aligned_cols=203 Identities=15% Similarity=0.124 Sum_probs=120.9
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc-----eeecCCccCccc
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS-----VYTSGKSSSAAG 428 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~-----~~~~g~~ss~~g 428 (794)
.+.+++|++..+..+.-.+..+... |+||+||||||||++++.+++.+... .+.... +...+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 81 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIP------------HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA-SDERG 81 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCC------------CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET-TCTTC
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCC------------eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc-ccccC
Confidence 3446889999988887777655321 69999999999999999998864211 111000 00000
Q ss_pred cccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC
Q 003809 429 LTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG 508 (794)
Q Consensus 429 Lt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G 508 (794)
.. ..... -..+ .....+..+..++++|||++.++...+..|+..++.. +.++.+|+++|...
T Consensus 82 ~~--~~~~~-~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~- 143 (226)
T 2chg_A 82 ID--VVRHK-IKEF-ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVS- 143 (226)
T ss_dssp HH--HHHHH-HHHH-HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-
T ss_pred hH--HHHHH-HHHH-hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh-
Confidence 00 00000 0000 0000111245679999999999999999999999753 23577788888652
Q ss_pred CCCCCCCccCc-ccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHH
Q 003809 509 RYDKSKPLKKH-EDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIR 586 (794)
Q Consensus 509 ryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliR 586 (794)
.+++ .+..+ ....-++++.+.++.++... +.....+++++.+.|...+ +-.+|.+..+++
T Consensus 144 ~~~~--~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----------------~g~~r~l~~~l~ 205 (226)
T 2chg_A 144 RIIE--PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS----------------GGDFRKAINALQ 205 (226)
T ss_dssp GSCH--HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH----------------TTCHHHHHHHHH
T ss_pred hcCH--HHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------------CCCHHHHHHHHH
Confidence 1110 01100 11112356677777776543 3345568888887776432 235688777776
Q ss_pred HHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 587 LSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 587 lseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
.+...+ +.|+.+||.+|+.
T Consensus 206 ~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 206 GAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHhcC-----ceecHHHHHHHhc
Confidence 554433 6899999999875
No 33
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.19 E-value=1.5e-11 Score=133.23 Aligned_cols=219 Identities=15% Similarity=0.129 Sum_probs=120.5
Q ss_pred CceechhhHHHHHHHHHhCCccc-ccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHK-LTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~-~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
.+|.|++.+|+.|.-.+...... ....+ ..+...++||+||||||||++++++++.+...++.... ..+.....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~----~~l~~~~~ 92 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS----SDLVSKWM 92 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH----HHHHTTTG
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch----HHHhhccc
Confidence 35889999988887665311100 00001 12234489999999999999999999987766553211 11111100
Q ss_pred cCCCCcccccccCcee---ecCCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEeecCceEEE
Q 003809 435 KEPETGEFCIEAGALM---LADNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNARTSIL 500 (794)
Q Consensus 435 ~d~~~g~~~~~~Gal~---lad~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~sii 500 (794)
.. .+..+ ...+. ....+|+||||+|.+... .+..++..|+.-. ..+.++.||
T Consensus 93 g~---~~~~~-~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi 158 (322)
T 3eie_A 93 GE---SEKLV-KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVL 158 (322)
T ss_dssp GG---HHHHH-HHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEE
T ss_pred ch---HHHHH-HHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEE
Confidence 00 00000 00111 123479999999988653 2456666664221 123468999
Q ss_pred EecCCCCC-------CCCCCCCccCcccccCccccHHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCcc
Q 003809 501 AAANPAGG-------RYDKSKPLKKHEDALAPAFTTAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRV 572 (794)
Q Consensus 501 AaaNP~~G-------ryd~~~~l~~~~~~~~~~~~~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~ 572 (794)
||+|+... ||+.... -+..+.+..+.++.. ++.....++++..+.|.. .
T Consensus 159 ~atn~~~~ld~al~~Rf~~~i~--------~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~---------------~ 215 (322)
T 3eie_A 159 GATNIPWQLDSAIRRRFERRIY--------IPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGA---------------M 215 (322)
T ss_dssp EEESCGGGSCHHHHHHCCEEEE--------CCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHH---------------T
T ss_pred EecCChhhCCHHHHcccCeEEE--------eCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHH---------------H
Confidence 99997531 2211111 112233333333332 223333456655544432 2
Q ss_pred ccccCHHHHHHHHHHHHHHHHhcCC-------------------------------------------CCcCHHHHHHHH
Q 003809 573 AYRMTVRQLEALIRLSEAIARSHLE-------------------------------------------TQVHPRHVRVAV 609 (794)
Q Consensus 573 ~~~iT~R~LesliRlseA~Arl~~~-------------------------------------------~~V~~~dv~eAi 609 (794)
+.+++.+.+..+++-|...|.-++. ..|+.+|+.+|+
T Consensus 216 t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al 295 (322)
T 3eie_A 216 TEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAI 295 (322)
T ss_dssp TTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHH
Confidence 3457899999999977444422211 349999999999
Q ss_pred HHHhhhc
Q 003809 610 RLLKTSV 616 (794)
Q Consensus 610 ~L~~~s~ 616 (794)
+-++-|+
T Consensus 296 ~~~~ps~ 302 (322)
T 3eie_A 296 KSTRPTV 302 (322)
T ss_dssp HHSCCSS
T ss_pred HhcCCCC
Confidence 9776654
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=125.83 Aligned_cols=221 Identities=17% Similarity=0.193 Sum_probs=109.4
Q ss_pred CCceechhhHHHHHHHHHh--CCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccc
Q 003809 355 GPTVFGHQDIKRAILLMLL--GGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTAS 432 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~--gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~ 432 (794)
+.+|.|++.+|+.+.-.+. .........| .+..-++||+||||||||++++++++.+...++..... .+...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g--~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~----~~~~~ 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLG--AKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGA----EFVEV 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC--------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETT----TTSSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC--CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechH----HHHhh
Confidence 3468899998887743322 1111111111 22334799999999999999999999876554431110 01000
Q ss_pred cccCCCCcccccccCceeec---CCCeEEecccccCC------------hhhHHHHHHHhhccEEEEeecceEEeecCce
Q 003809 433 VAKEPETGEFCIEAGALMLA---DNGICCIDEFDKMD------------IRDQVAIHEAMEQQTISITKAGIQATLNART 497 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~------------~~~~~~L~eame~~~isi~kaG~~~~l~ar~ 497 (794)
... .+...+ .+.+..+ ..+|+||||++.+. ...+..+...++.-. +. ..+.++
T Consensus 79 ~~~---~~~~~~-~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~~ 146 (262)
T 2qz4_A 79 IGG---LGAARV-RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD------GM--GTTDHV 146 (262)
T ss_dssp STT---HHHHHH-HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH------TC--CTTCCE
T ss_pred ccC---hhHHHH-HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh------Cc--CCCCCE
Confidence 000 000000 0111111 25799999999883 333334444433100 00 113478
Q ss_pred EEEEecCCCC---------CCCCCCCCccCcccccCccccHHHHHHHHH-HHhccCCcCCHHH-HHHHHHHHHHhccCCC
Q 003809 498 SILAAANPAG---------GRYDKSKPLKKHEDALAPAFTTAQLKRYIA-YAKTLKPKLSLEA-RKLLVDSYVALRRGDT 566 (794)
Q Consensus 498 siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~-~ar~~~P~ls~ea-~~~L~~~Y~~lR~~~~ 566 (794)
.+|+|+|+.. |||+....+. ..+.+..+.++. +++......+.+. ...+..
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~--------~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~---------- 208 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFID--------LPTLQERREIFEQHLKSLKLTQSSTFYSQRLAE---------- 208 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECC--------SCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHH----------
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeC--------CcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHH----------
Confidence 8999999753 3443322222 223444333332 2333433444332 122211
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhc
Q 003809 567 TPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSV 616 (794)
Q Consensus 567 ~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~ 616 (794)
...+.+.|.+..+++.|...|..+.+..|+.+|+.+|+.-+..+.
T Consensus 209 -----~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 209 -----LTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp -----TCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHH
T ss_pred -----HCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccCh
Confidence 123467899999999999999888889999999999998766553
No 35
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.3e-11 Score=136.63 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=103.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~ 467 (794)
.+||+||||||||+|+++++..+...++.... .+...|-+...++.-+... ......|+||||+|.+-.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A--------~~~aP~IifiDEiDal~~ 288 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA--------KEKAPTIIFIDELDAIGT 288 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHH--------HHHCSEEEEEECTHHHHC
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHH--------HhcCCeEEeecchhhhhh
Confidence 69999999999999999999998877664211 1111222221111100000 011347999999995411
Q ss_pred -----------hh---HHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC---------CCCCCCCCCccCcccccC
Q 003809 468 -----------RD---QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA---------GGRYDKSKPLKKHEDALA 524 (794)
Q Consensus 468 -----------~~---~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~---------~Gryd~~~~l~~~~~~~~ 524 (794)
.. ...|+..|+.-. -..++.||||||.+ +||||....+.
T Consensus 289 ~R~~~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~------- 350 (434)
T 4b4t_M 289 KRFDSEKSGDREVQRTMLELLNQLDGFS-----------SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFP------- 350 (434)
T ss_dssp CCSSGGGGTTHHHHHHHHHHHHHHTTSC-----------SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECC-------
T ss_pred ccCCCCCCCchHHHHHHHHHHHHhhccC-----------CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeC-------
Confidence 11 223555554211 12368899999965 35555444333
Q ss_pred ccccHHHHHHHH--HHHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCc
Q 003809 525 PAFTTAQLKRYI--AYAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQV 600 (794)
Q Consensus 525 ~~~~~~~lr~yi--~~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V 600 (794)
++...-|.-| .+.+. +.+.+.- +.| +..+-++|.++|.++++-|.-.|.-+.+..|
T Consensus 351 --lPd~~~R~~Il~~~~~~~~~~~dvdl---~~l---------------A~~t~G~sGADi~~l~~eA~~~a~r~~~~~i 410 (434)
T 4b4t_M 351 --LPSEDSRAQILQIHSRKMTTDDDINW---QEL---------------ARSTDEFNGAQLKAVTVEAGMIALRNGQSSV 410 (434)
T ss_dssp --CCCHHHHHHHHHHHHHHSCBCSCCCH---HHH---------------HHHCSSCCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred --CcCHHHHHHHHHHHhcCCCCCCcCCH---HHH---------------HHhCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 2222212111 11222 2222221 111 1223468999999999999888888889999
Q ss_pred CHHHHHHHHHHHhhh
Q 003809 601 HPRHVRVAVRLLKTS 615 (794)
Q Consensus 601 ~~~dv~eAi~L~~~s 615 (794)
+.+|+.+|+.-++.+
T Consensus 411 ~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 411 KHEDFVEGISEVQAR 425 (434)
T ss_dssp CHHHHHHHHHSCSSS
T ss_pred CHHHHHHHHHHHhCC
Confidence 999999999765443
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.18 E-value=1.5e-10 Score=127.23 Aligned_cols=219 Identities=17% Similarity=0.143 Sum_probs=124.5
Q ss_pred CceechhhHHHHHHHHHhCCccc-ccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHK-LTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~-~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
.+|.|++.+|+.|.-.+...... ....+. .+..-++||+||||||||++++++++.+...++.... ..+....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~----~~l~~~~- 157 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA----SSLTSKW- 157 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG----GGGCCSS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh----HHhhccc-
Confidence 46899999988886655321000 000000 1223489999999999999999999988765543211 1111110
Q ss_pred cCCCCcccc-cccCcee---ecCCCeEEecccccCCh-----------hhHHHHHHHhhccEEEEeecceEEeecCceEE
Q 003809 435 KEPETGEFC-IEAGALM---LADNGICCIDEFDKMDI-----------RDQVAIHEAMEQQTISITKAGIQATLNARTSI 499 (794)
Q Consensus 435 ~d~~~g~~~-~~~Gal~---lad~GIl~IDE~dk~~~-----------~~~~~L~eame~~~isi~kaG~~~~l~ar~si 499 (794)
.|+.. .....+. ....+|+||||+|.+.. ..+..++..|+... ...+.++.|
T Consensus 158 ----~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---------~~~~~~v~v 224 (357)
T 3d8b_A 158 ----VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT---------TSSEDRILV 224 (357)
T ss_dssp ----TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEE
T ss_pred ----cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc---------ccCCCCEEE
Confidence 01000 0001111 23468999999998743 23455666665322 223457999
Q ss_pred EEecCCCC-------CCCCCCCCccCcccccCccccHHHHHHHHH-HHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCc
Q 003809 500 LAAANPAG-------GRYDKSKPLKKHEDALAPAFTTAQLKRYIA-YAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSR 571 (794)
Q Consensus 500 iAaaNP~~-------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~-~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~ 571 (794)
|||+|+.. .||+.... -+..+.+..+.++. +++.....+++++.+.|...
T Consensus 225 I~atn~~~~l~~~l~~Rf~~~i~--------i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~-------------- 282 (357)
T 3d8b_A 225 VGATNRPQEIDEAARRRLVKRLY--------IPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQ-------------- 282 (357)
T ss_dssp EEEESCGGGBCHHHHTTCCEEEE--------CCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHH--------------
T ss_pred EEecCChhhCCHHHHhhCceEEE--------eCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH--------------
Confidence 99999753 23321111 12234444444443 33334445777766665442
Q ss_pred cccccCHHHHHHHHHHHHHHHHhcC------------CCCcCHHHHHHHHHHHhhhc
Q 003809 572 VAYRMTVRQLEALIRLSEAIARSHL------------ETQVHPRHVRVAVRLLKTSV 616 (794)
Q Consensus 572 ~~~~iT~R~LesliRlseA~Arl~~------------~~~V~~~dv~eAi~L~~~s~ 616 (794)
..+++.+.+..+++-|...|.-++ ...|+.+|+..|+.-++-|+
T Consensus 283 -t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 283 -SDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp -TTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGC
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 224678999999987765544332 25799999999998887664
No 37
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.18 E-value=7.5e-11 Score=132.34 Aligned_cols=176 Identities=16% Similarity=0.171 Sum_probs=101.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccccccCCCCcccccccCceeecCCCeEEecccccCCh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDI 467 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~ 467 (794)
.+||+||||||||+|++++|..+...++.... .+...|-+...+++-+... ......|+||||+|.+..
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A--------~~~aP~IifiDEiD~i~~ 279 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA--------RENAPSIIFIDEVDSIAT 279 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHH--------HHTCSEEEEEECTHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHH--------HHcCCCeeechhhhhhhc
Confidence 59999999999999999999998887764211 1111222222221100000 001247999999984311
Q ss_pred --------------hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCcccccC
Q 003809 468 --------------RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHEDALA 524 (794)
Q Consensus 468 --------------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~~ 524 (794)
...+.|+..|+.- . -..++.||||||... ||||....+.
T Consensus 280 ~R~~~~~~~~~~~~r~l~~lL~~ldg~---------~--~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p------- 341 (428)
T 4b4t_K 280 KRFDAQTGSDREVQRILIELLTQMDGF---------D--QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP------- 341 (428)
T ss_dssp SCSSSCSCCCCHHHHHHHHHHHHHHHS---------C--SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECC-------
T ss_pred cccCCCCCCChHHHHHHHHHHHHhhCC---------C--CCCCEEEEEecCChhhcChhhhcCCcceEEEEcC-------
Confidence 1234556666421 1 123578999999663 5555433321
Q ss_pred ccccHHHHHHHHH--HHhc--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCc
Q 003809 525 PAFTTAQLKRYIA--YAKT--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQV 600 (794)
Q Consensus 525 ~~~~~~~lr~yi~--~ar~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V 600 (794)
.++...-|+.|. +.+. +.+.+. .+.| +..+.++|.++|.++++-|.-.|..+.+..|
T Consensus 342 -~lPd~~~R~~Il~~~~~~~~l~~~~d---l~~l---------------A~~t~G~sgadi~~l~~eA~~~a~r~~~~~i 402 (428)
T 4b4t_K 342 -SLRDRRERRLIFGTIASKMSLAPEAD---LDSL---------------IIRNDSLSGAVIAAIMQEAGLRAVRKNRYVI 402 (428)
T ss_dssp -SSCCHHHHHHHHHHHHHSSCBCTTCC---HHHH---------------HHHTTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred -CCCCHHHHHHHHHHHhcCCCCCcccC---HHHH---------------HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Confidence 122111122111 1121 222222 1112 1223468999999999999888888899999
Q ss_pred CHHHHHHHHHH
Q 003809 601 HPRHVRVAVRL 611 (794)
Q Consensus 601 ~~~dv~eAi~L 611 (794)
+.+|+.+|+.-
T Consensus 403 ~~~d~~~A~~~ 413 (428)
T 4b4t_K 403 LQSDLEEAYAT 413 (428)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999864
No 38
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.16 E-value=4.7e-11 Score=136.71 Aligned_cols=231 Identities=16% Similarity=0.127 Sum_probs=122.9
Q ss_pred CceechhhHHHHHHHHHhCCcc-cccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVH-KLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~-~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
.+|.|++..++.|.-.+.-... .........+..-++||+||||||||+++++++..+...++.... ..+.....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~----~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING----PEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEH----HHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEc----hHhhhhhc
Confidence 3588988887776544321100 000000011223379999999999999999999988665543211 11111000
Q ss_pred cCCCCcccccccCceeecC---CCeEEecccccCCh-----------hhHHHHHHHhhccEEEEeecceEEeecCceEEE
Q 003809 435 KEPETGEFCIEAGALMLAD---NGICCIDEFDKMDI-----------RDQVAIHEAMEQQTISITKAGIQATLNARTSIL 500 (794)
Q Consensus 435 ~d~~~g~~~~~~Gal~lad---~GIl~IDE~dk~~~-----------~~~~~L~eame~~~isi~kaG~~~~l~ar~sii 500 (794)
+.......+.+..|. .+++||||+|.+.+ ..+..|+..|+... .+.++.||
T Consensus 280 ----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vI 344 (489)
T 3hu3_A 280 ----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVM 344 (489)
T ss_dssp ----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEE
T ss_pred ----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEE
Confidence 000001122333333 35999999976654 46678899887331 24579999
Q ss_pred EecCCCC---------CCCCCCCCccCcccccCccccHHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCC
Q 003809 501 AAANPAG---------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGS 570 (794)
Q Consensus 501 AaaNP~~---------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~ 570 (794)
||+|+.. |||+....+. ..+.+..+..+.. ++.+. ...+.....+.
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~--------~P~~~eR~~IL~~~~~~~~-l~~~~~l~~la--------------- 400 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIG--------IPDATGRLEILQIHTKNMK-LADDVDLEQVA--------------- 400 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECC--------CCCHHHHHHHHHHHTTTSC-BCTTCCHHHHH---------------
T ss_pred EecCCccccCHHHhCCCcCceEEEeC--------CCCHHHHHHHHHHHHhcCC-CcchhhHHHHH---------------
Confidence 9999762 3443322222 2233333333322 22221 11111111111
Q ss_pred ccccccCHHHHHHHHHHHHHHHHhcCCC-----------------CcCHHHHHHHHHHHhhhcc---cccCCccccccc
Q 003809 571 RVAYRMTVRQLEALIRLSEAIARSHLET-----------------QVHPRHVRVAVRLLKTSVI---SVESSEIDLSEF 629 (794)
Q Consensus 571 ~~~~~iT~R~LesliRlseA~Arl~~~~-----------------~V~~~dv~eAi~L~~~s~~---~~~~~~i~~~~~ 629 (794)
....+++.+.|..+++-|...|..+..+ .|+.+|+..|++-++.|.. .++.++|-|++.
T Consensus 401 ~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~di 479 (489)
T 3hu3_A 401 NETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDI 479 (489)
T ss_dssp HTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC----------
T ss_pred HHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHc
Confidence 1234578899999999888888665543 4899999999988776653 357888888764
No 39
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.14 E-value=4.6e-10 Score=127.50 Aligned_cols=137 Identities=22% Similarity=0.256 Sum_probs=92.0
Q ss_pred CeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecC----CCCCCCCCCCCccCc-ccccCccccH
Q 003809 455 GICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAAN----PAGGRYDKSKPLKKH-EDALAPAFTT 529 (794)
Q Consensus 455 GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaN----P~~Gryd~~~~l~~~-~~~~~~~~~~ 529 (794)
+|++|||+++|+.+.+++|+.+||...-.+. +..+ |....+|+++| |.. ..+ .+..+ ....-++++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~---il~t-n~~~~~i~~~~~~~~~~~--l~~--~i~sR~~~~~~~~~~~ 368 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIV---IFAS-NRGNCVIRGTEDITSPHG--IPL--DLLDRVMIIRTMLYTP 368 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEE---EEEE-CCSEEECBTTSSCEEETT--CCH--HHHTTEEEEECCCCCH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEE---EEec-CCcccccccccccccccc--CCh--hHHhhcceeeCCCCCH
Confidence 6999999999999999999999986421100 0011 22233444454 211 000 01100 1112346788
Q ss_pred HHHHHHHHHHh-ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHH
Q 003809 530 AQLKRYIAYAK-TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVA 608 (794)
Q Consensus 530 ~~lr~yi~~ar-~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eA 608 (794)
+.+..++.... .....+++++...|..... ..++|....+++.|.+.|.++.+..|+.+||.+|
T Consensus 369 ~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~---------------~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 369 QEMKQIIKIRAQTEGINISEEALNHLGEIGT---------------KTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH---------------HSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcc---------------CCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 88888887553 3455689998888876331 1358999999999999999999999999999999
Q ss_pred HHHHhh
Q 003809 609 VRLLKT 614 (794)
Q Consensus 609 i~L~~~ 614 (794)
+.++-+
T Consensus 434 ~~~~~d 439 (456)
T 2c9o_A 434 SELFYD 439 (456)
T ss_dssp HHHSCC
T ss_pred HHHhcC
Confidence 999743
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.11 E-value=2.7e-10 Score=121.18 Aligned_cols=221 Identities=16% Similarity=0.143 Sum_probs=119.7
Q ss_pred CceechhhHHHHHHHHHhCCcc-cccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVH-KLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~-~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
.+|.|++.+|+.+.-.+..... .....+.. ...-++||+||||||||++++++++.+...++.... ..+.....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~----~~l~~~~~ 95 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISA----ASLTSKYV 95 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES----TTTSSSSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH----HHHhhccc
Confidence 4688999998888665532210 00001111 112389999999999999999999988765443211 11111100
Q ss_pred cCCCCcccccc--cCceeecCCCeEEecccccCCh-----------hhHHHHHHHhhccEEEEeecceEEeecCceEEEE
Q 003809 435 KEPETGEFCIE--AGALMLADNGICCIDEFDKMDI-----------RDQVAIHEAMEQQTISITKAGIQATLNARTSILA 501 (794)
Q Consensus 435 ~d~~~g~~~~~--~Gal~lad~GIl~IDE~dk~~~-----------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiA 501 (794)
. .+..... -........+|+||||++.+.. ..+..|+..|+..... ....++.+|+
T Consensus 96 ~---~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~ 164 (297)
T 3b9p_A 96 G---DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLA 164 (297)
T ss_dssp S---CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEE
T ss_pred c---hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEe
Confidence 0 0000000 0011123468999999998743 3344566666533211 1123588999
Q ss_pred ecCCCC-------CCCCCCCCccCcccccCccccHHHHHHHH-HHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccc
Q 003809 502 AANPAG-------GRYDKSKPLKKHEDALAPAFTTAQLKRYI-AYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVA 573 (794)
Q Consensus 502 aaNP~~-------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi-~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~ 573 (794)
|+|... .||+.... -+..+.+.....+ .+++.....+++++.+.|... +
T Consensus 165 ~tn~~~~l~~~l~~R~~~~i~--------~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~---------------~ 221 (297)
T 3b9p_A 165 ATNRPQELDEAALRRFTKRVY--------VSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKI---------------T 221 (297)
T ss_dssp EESCGGGBCHHHHHHCCEEEE--------CCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHH---------------T
T ss_pred ecCChhhCCHHHHhhCCeEEE--------eCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------------c
Confidence 999653 12211111 1122333333222 223344445777666555432 2
Q ss_pred cccCHHHHHHHHHHHHHHHHhcC------------CCCcCHHHHHHHHHHHhhh
Q 003809 574 YRMTVRQLEALIRLSEAIARSHL------------ETQVHPRHVRVAVRLLKTS 615 (794)
Q Consensus 574 ~~iT~R~LesliRlseA~Arl~~------------~~~V~~~dv~eAi~L~~~s 615 (794)
.+.+.+.|..+++.|...|.-++ ...|+.+|+..|+.-++.|
T Consensus 222 ~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 222 DGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp TTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 35678999999998866665544 2579999999988765544
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.11 E-value=9.8e-11 Score=128.77 Aligned_cols=197 Identities=15% Similarity=0.136 Sum_probs=106.5
Q ss_pred CCceechhhHHHHHHHHHhCCcc-cccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccc
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVH-KLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASV 433 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~-~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v 433 (794)
+.+|.|++.+|+.|.-++..... .....+ ..+..-++||+||||||||+|++++++.+...++... ...+....
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~----~~~l~~~~ 124 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS----SSDLVSKW 124 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE----HHHHHSCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEee----HHHHhhhh
Confidence 34699999999988766532110 000001 1123347999999999999999999998876554321 11111111
Q ss_pred ccCCCCcccccccCceee---cCCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEeecCceEE
Q 003809 434 AKEPETGEFCIEAGALML---ADNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNARTSI 499 (794)
Q Consensus 434 ~~d~~~g~~~~~~Gal~l---ad~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~si 499 (794)
... .+..+ ...+.. ...+|+||||+|.+... .++.|+..|+.-. ..+.++.|
T Consensus 125 ~g~---~~~~~-~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~v 190 (355)
T 2qp9_X 125 MGE---SEKLV-KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLV 190 (355)
T ss_dssp ------CHHHH-HHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEE
T ss_pred cch---HHHHH-HHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEE
Confidence 000 00000 011111 24679999999988743 3556666665321 11346899
Q ss_pred EEecCCCC-------CCCCCCCCccCcccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCc
Q 003809 500 LAAANPAG-------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSR 571 (794)
Q Consensus 500 iAaaNP~~-------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~ 571 (794)
|||+|+.. .||+....+ +..+.+..+.++... +.....+++...+.|..
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i--------~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~--------------- 247 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYI--------PLPDLAARTTMFEINVGDTPSVLTKEDYRTLGA--------------- 247 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEEC--------CCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHH---------------
T ss_pred EeecCCcccCCHHHHcccCEEEEe--------CCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH---------------
Confidence 99999763 122221111 123444444444322 22333456665555543
Q ss_pred cccccCHHHHHHHHHHHHHHHH
Q 003809 572 VAYRMTVRQLEALIRLSEAIAR 593 (794)
Q Consensus 572 ~~~~iT~R~LesliRlseA~Ar 593 (794)
.+.+.+.|.|..+++-|...|-
T Consensus 248 ~t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 248 MTEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 1234688999999997755543
No 42
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.10 E-value=2.9e-11 Score=126.78 Aligned_cols=212 Identities=17% Similarity=0.196 Sum_probs=111.2
Q ss_pred CceechhhHHHHHHHHHhC--CcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLG--GVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASV 433 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~g--g~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v 433 (794)
.+|+|++.+|+.+.-.+.. ...... ....+..-++||+||||||||++++++++.+...++..... .+....
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~----~~~~~~ 84 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYA--NLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGS----SFIEMF 84 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHH--HHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSC----TTTTSC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHH--HCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechH----HHHHhh
Confidence 3577888777766543321 000000 00011122589999999999999999999876544432111 111100
Q ss_pred ccCCCCcccccccCceeec---CCCeEEecccccCChhh---------------HHHHHHHhhccEEEEeecceEEeecC
Q 003809 434 AKEPETGEFCIEAGALMLA---DNGICCIDEFDKMDIRD---------------QVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 434 ~~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~~~---------------~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
... +...+ .+.+..+ ..+|+||||++.+.... +..|+..|+.-. ..+.
T Consensus 85 ~~~---~~~~~-~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~ 150 (268)
T 2r62_A 85 VGL---GASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----------SENA 150 (268)
T ss_dssp SSS---CSSSS-STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS----------CSCS
T ss_pred cch---HHHHH-HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc----------cCCC
Confidence 000 00000 1122222 24899999999987542 334555554210 1234
Q ss_pred ceEEEEecCCCC---------CCCCCCCCccCcccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCC
Q 003809 496 RTSILAAANPAG---------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGD 565 (794)
Q Consensus 496 r~siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~ 565 (794)
++.+|+|+|+.. |||+....+. ..+.+..+.++... +.. +..++ .+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~--------~p~~~~r~~il~~~~~~~-~~~~~---------------~~ 206 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVD--------KPDFNGRVEILKVHIKGV-KLAND---------------VN 206 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCC--------CCCTTTHHHHHHHHTSSS-CCCSS---------------CC
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEec--------CcCHHHHHHHHHHHHhcC-CCCCc---------------cC
Confidence 588999999763 2443332222 11222222232211 111 10000 00
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
.........+.+.|+|..+++.|...|.......|+.+|+.+|+.-
T Consensus 207 ~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 207 LQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp TTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 1112233456788999999999999988888889999999887653
No 43
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.10 E-value=1.5e-10 Score=139.69 Aligned_cols=209 Identities=12% Similarity=0.117 Sum_probs=117.3
Q ss_pred HhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc---cee-ecCCcc
Q 003809 349 KIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR---SVY-TSGKSS 424 (794)
Q Consensus 349 ~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~---~~~-~~g~~s 424 (794)
.+.+.+...|+|++.+++.+.-++....... .+ .-+..-++||+||||||||.+++++++.+.+ .+. ....
T Consensus 484 ~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~-~~--~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s-- 558 (758)
T 3pxi_A 484 NMENILHSRVIGQDEAVVAVAKAVRRARAGL-KD--PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS-- 558 (758)
T ss_dssp CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC-SC--TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG--
T ss_pred HHHHHHhCcCcChHHHHHHHHHHHHHHHccc-CC--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech--
Confidence 3445566789999998877766654221000 00 0111127999999999999999999998622 111 1100
Q ss_pred CccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecC
Q 003809 425 SAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAAN 504 (794)
Q Consensus 425 s~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaN 504 (794)
.+...... ..|.+ .+++..+.++|+||||++++++..++.|+++|+++.++.. +.......++.+|+|+|
T Consensus 559 ---~~~~~~~~--~~~~l---~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 559 ---EYMEKHST--SGGQL---TEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDS--KGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ---GGCSSCCC--C---C---HHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEES
T ss_pred ---hccccccc--ccchh---hHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcC--CCCEeccCCeEEEEeCC
Confidence 01100000 01111 1233344678999999999999999999999999988765 33334456899999999
Q ss_pred CCCCC-----------CCCCCCccCc-ccccCccccHHHHHHHH----HHH-h-----ccCCcCCHHHHHHHHHHHHHhc
Q 003809 505 PAGGR-----------YDKSKPLKKH-EDALAPAFTTAQLKRYI----AYA-K-----TLKPKLSLEARKLLVDSYVALR 562 (794)
Q Consensus 505 P~~Gr-----------yd~~~~l~~~-~~~~~~~~~~~~lr~yi----~~a-r-----~~~P~ls~ea~~~L~~~Y~~lR 562 (794)
..... |.+..-- +. ....-++++.+.+...+ ... + .....+++++.+.|.+.
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~-Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~----- 702 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFIN-RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEE----- 702 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHT-TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGG-----
T ss_pred CChhhHHHHHHHHHhhCCHHHHh-hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHh-----
Confidence 64321 1110000 00 01112344444444332 221 1 13457888888888641
Q ss_pred cCCCCCCCccccccCHHHHHHHHH
Q 003809 563 RGDTTPGSRVAYRMTVRQLEALIR 586 (794)
Q Consensus 563 ~~~~~~~~~~~~~iT~R~LesliR 586 (794)
...|+..+|.|+++|.
T Consensus 703 --------~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 703 --------GVDLEYGARPLRRAIQ 718 (758)
T ss_dssp --------GCCTTTTTTTHHHHHH
T ss_pred --------CCCCCCCChHHHHHHH
Confidence 1235667788888887
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.09 E-value=3.7e-10 Score=122.48 Aligned_cols=196 Identities=16% Similarity=0.093 Sum_probs=100.2
Q ss_pred CceechhhHHHHHHHHHhCCcc-cccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC-CcceeecCCccCcccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVH-KLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV-PRSVYTSGKSSSAAGLTASV 433 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~-~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~-p~~~~~~g~~ss~~gLt~~v 433 (794)
-+|.|++.+|+.|.-.+.-... .....|. .+..-++||+||||||||+|++++++.+ ...++... ...+....
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~----~~~l~~~~ 86 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS----SSDLVSKW 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE----CCSSCCSS
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE----hHHHHhhh
Confidence 3688999888877654421100 0000111 1122379999999999999999999987 33333211 11111111
Q ss_pred ccCCCCccccccc--CceeecCCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEeecCceEEE
Q 003809 434 AKEPETGEFCIEA--GALMLADNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNARTSIL 500 (794)
Q Consensus 434 ~~d~~~g~~~~~~--Gal~lad~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~sii 500 (794)
... .+..+.. ........+|+||||+|.+... ..+.++..|+.-. ..+.++.||
T Consensus 87 ~g~---~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI 153 (322)
T 1xwi_A 87 LGE---SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVL 153 (322)
T ss_dssp CCS---CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEE
T ss_pred hhH---HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc----------ccCCCEEEE
Confidence 100 0000000 0001124579999999987321 2344555554211 123578999
Q ss_pred EecCCCCC-------CCCCCCCccCcccccCccccHHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCcc
Q 003809 501 AAANPAGG-------RYDKSKPLKKHEDALAPAFTTAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRV 572 (794)
Q Consensus 501 AaaNP~~G-------ryd~~~~l~~~~~~~~~~~~~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~ 572 (794)
||+|+... ||+....+ +..+.+..+.++.. .+.....+++...+.|.. .
T Consensus 154 ~atn~~~~ld~al~rRf~~~i~i--------~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~---------------~ 210 (322)
T 1xwi_A 154 GATNIPWVLDSAIRRRFEKRIYI--------PLPEPHARAAMFKLHLGTTQNSLTEADFRELGR---------------K 210 (322)
T ss_dssp EEESCTTTSCHHHHHTCCEEEEC--------CCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHH---------------T
T ss_pred EecCCcccCCHHHHhhcCeEEEe--------CCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH---------------H
Confidence 99997641 22211111 12233333333332 233334456655554432 2
Q ss_pred ccccCHHHHHHHHHHHHHHH
Q 003809 573 AYRMTVRQLEALIRLSEAIA 592 (794)
Q Consensus 573 ~~~iT~R~LesliRlseA~A 592 (794)
+.++|.++|..+++-|...|
T Consensus 211 t~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 211 TDGYSGADISIIVRDALMQP 230 (322)
T ss_dssp CTTCCHHHHHHHHHHHHTHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 34578999999999775433
No 45
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.08 E-value=8.2e-11 Score=112.46 Aligned_cols=92 Identities=10% Similarity=0.086 Sum_probs=66.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
||||+|+||||||+++++++..+++.-.. .. +.++...+ . ....|.+..+++|++||||++.+++..|
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~------~v-~~~~~~~~---~--~~~~~~~~~a~~g~l~ldei~~l~~~~q 93 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGE------FV-YRELTPDN---A--PQLNDFIALAQGGTLVLSHPEHLTREQQ 93 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSC------CE-EEECCTTT---S--SCHHHHHHHHTTSCEEEECGGGSCHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCC------EE-EECCCCCc---c--hhhhcHHHHcCCcEEEEcChHHCCHHHH
Confidence 89999999999999999999987542110 00 11110000 0 1234566778899999999999999999
Q ss_pred HHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 471 VAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 471 ~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
..|+.+|+. .+.++.+|+|+|...
T Consensus 94 ~~Ll~~l~~-------------~~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 94 YHLVQLQSQ-------------EHRPFRLIGIGDTSL 117 (145)
T ss_dssp HHHHHHHHS-------------SSCSSCEEEEESSCH
T ss_pred HHHHHHHhh-------------cCCCEEEEEECCcCH
Confidence 999999922 245678999999653
No 46
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.07 E-value=3.2e-11 Score=115.13 Aligned_cols=89 Identities=12% Similarity=0.167 Sum_probs=68.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
||||+|+||||||+++++++..++ .++... ...+... ...|.+..+++|++||||++.++++.|
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~----~~~~~~~-----------~~~~~~~~a~~~~l~lDei~~l~~~~q 92 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPA----RVEYLID-----------MPMELLQKAEGGVLYVGDIAQYSRNIQ 92 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEECCS----STTHHHH-----------CHHHHHHHTTTSEEEEEECTTCCHHHH
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeEEec----hhhCChH-----------hhhhHHHhCCCCeEEEeChHHCCHHHH
Confidence 899999999999999999999876 222111 0111110 135566678899999999999999999
Q ss_pred HHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 471 VAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 471 ~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
..|+++|+++. +.++.+|+|+|...
T Consensus 93 ~~Ll~~l~~~~------------~~~~~iI~~tn~~~ 117 (143)
T 3co5_A 93 TGITFIIGKAE------------RCRVRVIASCSYAA 117 (143)
T ss_dssp HHHHHHHHHHT------------TTTCEEEEEEEECT
T ss_pred HHHHHHHHhCC------------CCCEEEEEecCCCH
Confidence 99999998763 55788999999765
No 47
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.05 E-value=5.7e-10 Score=127.03 Aligned_cols=211 Identities=17% Similarity=0.211 Sum_probs=115.3
Q ss_pred ceechhhHHHHHHHHH--hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 357 TVFGHQDIKRAILLML--LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 357 ~I~G~e~vK~alll~L--~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
+|.|++.+|..+.-.+ +........-|. +-.-++||+||||||||+|+++++..+...++.... ..+.....
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~--~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~----~~~~~~~~ 90 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGA--RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG----SDFVELFV 90 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTC--CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG----GGTTTCCT
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCC--CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH----HHHHHHHh
Confidence 5777777666553221 222111111121 112259999999999999999999987665543211 11110000
Q ss_pred cCCCCcccccccCceeec---CCCeEEecccccCChh--------------hHHHHHHHhhccEEEEeecceEEeecCce
Q 003809 435 KEPETGEFCIEAGALMLA---DNGICCIDEFDKMDIR--------------DQVAIHEAMEQQTISITKAGIQATLNART 497 (794)
Q Consensus 435 ~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~~--------------~~~~L~eame~~~isi~kaG~~~~l~ar~ 497 (794)
. .+...+ .+.+..| ..+|+||||+|.+... .++.|+..|+.- .-+.++
T Consensus 91 g---~~~~~~-r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-----------~~~~~v 155 (476)
T 2ce7_A 91 G---VGAARV-RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-----------DSKEGI 155 (476)
T ss_dssp T---HHHHHH-HHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS-----------CGGGTE
T ss_pred c---ccHHHH-HHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc-----------CCCCCE
Confidence 0 010000 1122222 2469999999987553 345666666521 013468
Q ss_pred EEEEecCCCC---------CCCCCCCCccCcccccCccccHHHHHHHHH-HHhccCCcCCHHH-HHHHHHHHHHhccCCC
Q 003809 498 SILAAANPAG---------GRYDKSKPLKKHEDALAPAFTTAQLKRYIA-YAKTLKPKLSLEA-RKLLVDSYVALRRGDT 566 (794)
Q Consensus 498 siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~-~ar~~~P~ls~ea-~~~L~~~Y~~lR~~~~ 566 (794)
.||||+|+.. |||+....+. ..+.+..+.++. +++.. | +.++. ...|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~--------~Pd~~~R~~Il~~~~~~~-~-l~~~v~l~~la~---------- 215 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVD--------PPDMLGRKKILEIHTRNK-P-LAEDVNLEIIAK---------- 215 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECC--------CCCHHHHHHHHHHHHTTS-C-BCTTCCHHHHHH----------
T ss_pred EEEEecCChhhhchhhcccCcceeEeecC--------CCCHHHHHHHHHHHHHhC-C-CcchhhHHHHHH----------
Confidence 9999999752 4555433222 122222222221 22221 1 11111 112211
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHh
Q 003809 567 TPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLK 613 (794)
Q Consensus 567 ~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~ 613 (794)
...+.+.|+|+++++-|...|..+....|+.+|+.+|+.-+.
T Consensus 216 -----~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 216 -----RTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp -----TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred -----hcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHh
Confidence 223567899999999999898888888999999999997653
No 48
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.04 E-value=1.9e-10 Score=133.55 Aligned_cols=234 Identities=20% Similarity=0.235 Sum_probs=119.5
Q ss_pred HhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCc--cCc
Q 003809 349 KIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKS--SSA 426 (794)
Q Consensus 349 ~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~--ss~ 426 (794)
.+.+.+..+++|++.+|+.+.-.+.-..- . ..++|. ++||+||||||||+|+++++..+++........ ...
T Consensus 74 ~~~~~l~~di~G~~~vk~~i~~~~~l~~~--~---~~~~g~-~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~ 147 (543)
T 3m6a_A 74 EAGRLLDEEHHGLEKVKERILEYLAVQKL--T---KSLKGP-ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDE 147 (543)
T ss_dssp TGGGTHHHHCSSCHHHHHHHHHHHHHHHH--S---SSCCSC-EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHh--c---ccCCCC-EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchh
Confidence 34455666799999999887433321100 0 011233 799999999999999999999987654432111 011
Q ss_pred cccccccccCCCCcccccccCc----eee--cCCCeEEecccccCChhh----HHHHHHHhhccEEE-EeecceEEeec-
Q 003809 427 AGLTASVAKEPETGEFCIEAGA----LML--ADNGICCIDEFDKMDIRD----QVAIHEAMEQQTIS-ITKAGIQATLN- 494 (794)
Q Consensus 427 ~gLt~~v~~d~~~g~~~~~~Ga----l~l--ad~GIl~IDE~dk~~~~~----~~~L~eame~~~is-i~kaG~~~~l~- 494 (794)
..+.+...+ ..|. .+|. +.. ..++|+||||++++..+. +.+|++.|+.+... +...+.....+
T Consensus 148 ~~~~g~~~~--~ig~---~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 148 SEIRGHRRT--YVGA---MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ---------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhhhhHHHH--Hhcc---CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 111111000 0010 1111 112 267799999999999884 48899999754321 11222222222
Q ss_pred CceEEEEecCCCCCCCCCCCCccCccccc-CccccHHH----HHHHHHH--Hh--cc---CCcCCHHHHHHHHHHHHHhc
Q 003809 495 ARTSILAAANPAGGRYDKSKPLKKHEDAL-APAFTTAQ----LKRYIAY--AK--TL---KPKLSLEARKLLVDSYVALR 562 (794)
Q Consensus 495 ar~siiAaaNP~~Gryd~~~~l~~~~~~~-~~~~~~~~----lr~yi~~--ar--~~---~P~ls~ea~~~L~~~Y~~lR 562 (794)
.++.+|+|+|+.. .++ .++..+-..+ -+.++.+. +++|+.- .+ .+ ...+++++...|...|.
T Consensus 223 ~~v~iI~ttN~~~-~l~--~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~--- 296 (543)
T 3m6a_A 223 SKVLFIATANNLA-TIP--GPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT--- 296 (543)
T ss_dssp SSCEEEEECSSTT-TSC--HHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC---
T ss_pred cceEEEeccCccc-cCC--HHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC---
Confidence 5789999999864 111 1111111111 12233332 3333311 11 12 33578888888877553
Q ss_pred cCCCCCCCccccccCHHHHHHHHHHHHHHHHhc------CCCCcCHHHHHHHHH
Q 003809 563 RGDTTPGSRVAYRMTVRQLEALIRLSEAIARSH------LETQVHPRHVRVAVR 610 (794)
Q Consensus 563 ~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~------~~~~V~~~dv~eAi~ 610 (794)
++..+|+|++.+.-+-..|... ..-.|+.+|+.+++.
T Consensus 297 -----------~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 297 -----------REAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIG 339 (543)
T ss_dssp -----------CCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHC
T ss_pred -----------hhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhC
Confidence 2345688877665433333222 234688888887763
No 49
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.02 E-value=1e-09 Score=123.46 Aligned_cols=67 Identities=22% Similarity=0.388 Sum_probs=48.7
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCcccc-cCCCccccc---ceeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKL-THEGINLRG---DINVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~-~~~g~~~Rg---~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
+.+.+...|.|++.+|+++..++.....+. ...+ +++ .-|+||+||||||||++++++++.++..++
T Consensus 9 i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~--~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~ 79 (444)
T 1g41_A 9 IVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEP--LRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (444)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTT--TTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccc--cccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCce
Confidence 455566789999999999998886532110 0111 111 138999999999999999999999877655
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=2.1e-09 Score=116.57 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=125.4
Q ss_pred hcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc------ee-ecCCccC
Q 003809 353 SIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS------VY-TSGKSSS 425 (794)
Q Consensus 353 si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~------~~-~~g~~ss 425 (794)
.-+.+|+|++.++..+...+..|... |+||+||||||||++++.+++.+... +. .... .
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~--~ 99 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLP------------HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS--D 99 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCC------------CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS--S
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCC------------EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc--c
Confidence 34457899999999988888776422 79999999999999999999875321 11 1110 0
Q ss_pred ccccccccccCCCCccccc---------ccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCc
Q 003809 426 AAGLTASVAKEPETGEFCI---------EAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNAR 496 (794)
Q Consensus 426 ~~gLt~~v~~d~~~g~~~~---------~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar 496 (794)
..+. ...++. ...+.. ..+....+..+|++|||++.+++..+.+|+..|++.. .+
T Consensus 100 ~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------------~~ 163 (353)
T 1sxj_D 100 ERGI--SIVREK-VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------------GV 163 (353)
T ss_dssp CCCH--HHHTTH-HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------------TT
T ss_pred ccch--HHHHHH-HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-------------CC
Confidence 0110 011110 000000 0001112355799999999999999999999998642 24
Q ss_pred eEEEEecCCCCCCCCCCCCccCc-ccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCcccc
Q 003809 497 TSILAAANPAGGRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAY 574 (794)
Q Consensus 497 ~siiAaaNP~~Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~ 574 (794)
+.++.++|.... . ..++..+ ....-++++.+.+..++... +.....+++++.+.|.++.
T Consensus 164 ~~~il~~~~~~~-l--~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~---------------- 224 (353)
T 1sxj_D 164 TRFCLICNYVTR-I--IDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDIS---------------- 224 (353)
T ss_dssp EEEEEEESCGGG-S--CHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHT----------------
T ss_pred ceEEEEeCchhh-C--cchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----------------
Confidence 556666665431 0 0111111 11112346677777776543 3345568998888876631
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCC-CcCHHHHHHHHH
Q 003809 575 RMTVRQLEALIRLSEAIARSHLET-QVHPRHVRVAVR 610 (794)
Q Consensus 575 ~iT~R~LesliRlseA~Arl~~~~-~V~~~dv~eAi~ 610 (794)
.-.+|.+.++++.+.+.+.-.... .|+.+||.+++.
T Consensus 225 ~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 225 AGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp SSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 124788888887666655433222 799999988765
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.99 E-value=3.3e-10 Score=121.58 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=71.7
Q ss_pred ceechhhHHHHHHHHHhCCcc-cccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVH-KLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAK 435 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~-~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~ 435 (794)
+|.|++.+|+.|.-.+.-... ........++..-++||+||||||||+++++++..+...++... ...+......
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~----~~~l~~~~~g 91 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK----GPELLTMWFG 91 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC----HHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE----hHHHHhhhcC
Confidence 477887777766544321100 00000000112237999999999999999999998876544321 1111111111
Q ss_pred CCCCcccccccCceeec---CCCeEEecccccCChh--------------hHHHHHHHhhccEEEEeecceEEeecCceE
Q 003809 436 EPETGEFCIEAGALMLA---DNGICCIDEFDKMDIR--------------DQVAIHEAMEQQTISITKAGIQATLNARTS 498 (794)
Q Consensus 436 d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~~--------------~~~~L~eame~~~isi~kaG~~~~l~ar~s 498 (794)
..... ..+.+..+ ..+|+||||++.+... .+..|+..|+.-. -+.++.
T Consensus 92 ~~~~~----~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~ 156 (301)
T 3cf0_A 92 ESEAN----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVF 156 (301)
T ss_dssp TCTTH----HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEE
T ss_pred chHHH----HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEE
Confidence 10000 01112222 2479999999976543 3567777776311 134789
Q ss_pred EEEecCCC
Q 003809 499 ILAAANPA 506 (794)
Q Consensus 499 iiAaaNP~ 506 (794)
||||+|..
T Consensus 157 vi~atn~~ 164 (301)
T 3cf0_A 157 IIGATNRP 164 (301)
T ss_dssp EEEEESCG
T ss_pred EEEecCCc
Confidence 99999975
No 52
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.98 E-value=4.7e-09 Score=139.99 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=136.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee---cCCccCccccccccccCCCCccccccc--CceeecCC----CeEEecc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT---SGKSSSAAGLTASVAKEPETGEFCIEA--GALMLADN----GICCIDE 461 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~---~g~~ss~~gLt~~v~~d~~~g~~~~~~--Gal~lad~----GIl~IDE 461 (794)
|+||+||||||||.++..+...++...+. ....+++..+...+.. ..++.... |.+..+.+ .|+||||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~---~~e~~~~~~~G~~~~p~~~Gk~~VlFiDD 1382 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDH---HCEYKRTPSGETVLRPTQLGKWLVVFCDE 1382 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHH---HEEEEECTTSCEEEEESSTTCEEEEEETT
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhh---cceEEeccCCCcccCCCcCCceEEEEecc
Confidence 89999999999998886655544432221 1111122122222110 11221222 66665532 3999999
Q ss_pred cccCChh------hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC--CCCCCCCCccCccccc-CccccHHHH
Q 003809 462 FDKMDIR------DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG--GRYDKSKPLKKHEDAL-APAFTTAQL 532 (794)
Q Consensus 462 ~dk~~~~------~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~--Gryd~~~~l~~~~~~~-~~~~~~~~l 532 (794)
++...++ ....|+++|+++.+...+.+....+ .++.++||+||.+ ||+.-+..+.++-..+ -+..+.+.|
T Consensus 1383 iNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL 1461 (3245)
T 3vkg_A 1383 INLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSL 1461 (3245)
T ss_dssp TTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHH
T ss_pred cCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHH
Confidence 9976654 6788999999999988766666666 6899999999984 6764433333221111 123344444
Q ss_pred HHH-HHHH---hccCCcCC---HHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHH-HHHHHHHhcC--CCCcCH
Q 003809 533 KRY-IAYA---KTLKPKLS---LEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIR-LSEAIARSHL--ETQVHP 602 (794)
Q Consensus 533 r~y-i~~a---r~~~P~ls---~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliR-lseA~Arl~~--~~~V~~ 602 (794)
.+. -.+. ..+.|.+. +......++.|..++..-... .+.+|.+++|.|-++++ +..+...... .+.+-.
T Consensus 1462 ~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~-~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvr 1540 (3245)
T 3vkg_A 1462 TQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVR 1540 (3245)
T ss_dssp HHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTT-TSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHH
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCC-cCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHH
Confidence 443 2222 23455543 677888889999887654332 56789999999988876 3333332221 223344
Q ss_pred HHHHHHHHHHhhhcccccC
Q 003809 603 RHVRVAVRLLKTSVISVES 621 (794)
Q Consensus 603 ~dv~eAi~L~~~s~~~~~~ 621 (794)
--+.|+.|+|.+++++-++
T Consensus 1541 LW~HE~~RVF~DRLv~~~D 1559 (3245)
T 3vkg_A 1541 LWAHEALRLFQDRLVETEE 1559 (3245)
T ss_dssp HHHHHHHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHHHHcCCHHH
Confidence 4677889999998876543
No 53
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.97 E-value=4e-09 Score=120.72 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=113.3
Q ss_pred CceechhhHHHHHHHHH--hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCCccCccccccc
Q 003809 356 PTVFGHQDIKRAILLML--LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSSAAGLTAS 432 (794)
Q Consensus 356 p~I~G~e~vK~alll~L--~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss~~gLt~~ 432 (794)
.+|.|++.+|..+.-.. ++.......-|.++ .-++||+||||||||+|+++++..+...++. ++. .+...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~i--p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~-----~~~~~ 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI--PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS-----DFVEM 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCC--CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGG-----GGTSS
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCC--CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehh-----HHHHh
Confidence 35677777766553221 22221111112222 2259999999999999999999998755443 221 11100
Q ss_pred cccCCCCcccccc-cCceeec---CCCeEEecccccCChh--------------hHHHHHHHhhccEEEEeecceEEeec
Q 003809 433 VAKEPETGEFCIE-AGALMLA---DNGICCIDEFDKMDIR--------------DQVAIHEAMEQQTISITKAGIQATLN 494 (794)
Q Consensus 433 v~~d~~~g~~~~~-~Gal~la---d~GIl~IDE~dk~~~~--------------~~~~L~eame~~~isi~kaG~~~~l~ 494 (794)
..+...-. ...+-.+ ..+++||||++.+... ..+.|+..|+.+. .+
T Consensus 104 -----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~ 167 (499)
T 2dhr_A 104 -----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KD 167 (499)
T ss_dssp -----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SS
T ss_pred -----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cC
Confidence 00100000 0011111 2379999999976431 2244555554221 13
Q ss_pred CceEEEEecCCCC---------CCCCCCCCccCcccccCccccHHHHHHHHH-HHhccCCcCCHHH-HHHHHHHHHHhcc
Q 003809 495 ARTSILAAANPAG---------GRYDKSKPLKKHEDALAPAFTTAQLKRYIA-YAKTLKPKLSLEA-RKLLVDSYVALRR 563 (794)
Q Consensus 495 ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~-~ar~~~P~ls~ea-~~~L~~~Y~~lR~ 563 (794)
..+.++|++|+.. |||+....+. ..+.+..+..+. +++.+ .+++++ ...|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~--------~Pd~~~R~~IL~~~~~~~--~l~~dv~l~~l--------- 228 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAID--------APDVKGREQILRIHARGK--PLAEDVDLALL--------- 228 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECC--------CCCHHHHHHHHHHTTSSS--CCCCSSTTHHH---------
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecC--------CCCHHHHHHHHHHHHhcC--CCChHHHHHHH---------
Confidence 3578889999752 4555433332 112222222221 11211 122211 1111
Q ss_pred CCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhh
Q 003809 564 GDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKT 614 (794)
Q Consensus 564 ~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~ 614 (794)
.....+.+.|+|+++++-|...|..+.+..|+.+|+.+|+.-...
T Consensus 229 ------A~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 229 ------AKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp ------HTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTT
T ss_pred ------HHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Confidence 112335678999999999988888888889999999999986543
No 54
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.97 E-value=1.2e-09 Score=123.74 Aligned_cols=197 Identities=16% Similarity=0.092 Sum_probs=100.9
Q ss_pred CceechhhHHHHHHHHHhCCccc-ccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC-CcceeecCCccCcccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHK-LTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV-PRSVYTSGKSSSAAGLTASV 433 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~-~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~-p~~~~~~g~~ss~~gLt~~v 433 (794)
.+|.|++.+|+.|.-.+...... ....+ ..+..-++||+||||||||+|+++++..+ ...++... ...+....
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~----~~~l~~~~ 208 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS----SSDLVSKW 208 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC----CC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe----HHHHHhhh
Confidence 46899999999887655311000 00001 01122379999999999999999999988 33333211 11111111
Q ss_pred ccCCCCc-ccccccCceeecCCCeEEecccccCCh-----------hhHHHHHHHhhccEEEEeecceEEeecCceEEEE
Q 003809 434 AKEPETG-EFCIEAGALMLADNGICCIDEFDKMDI-----------RDQVAIHEAMEQQTISITKAGIQATLNARTSILA 501 (794)
Q Consensus 434 ~~d~~~g-~~~~~~Gal~lad~GIl~IDE~dk~~~-----------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiA 501 (794)
....... ...+ ........+|+||||+|.+.. ..++.|+..|+.-. ..+.++.||+
T Consensus 209 ~g~~~~~~~~~f--~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~ 276 (444)
T 2zan_A 209 LGESEKLVKNLF--QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLG 276 (444)
T ss_dssp ---CCCTHHHHH--HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEE
T ss_pred cchHHHHHHHHH--HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEe
Confidence 1100000 0000 000112457999999998833 23444555554211 1235799999
Q ss_pred ecCCCC-------CCCCCCCCccCcccccCccccHHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccc
Q 003809 502 AANPAG-------GRYDKSKPLKKHEDALAPAFTTAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVA 573 (794)
Q Consensus 502 aaNP~~-------Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~ 573 (794)
|+|+.. .||+....+ +..+.+..+.++.. ++.....+++...+.|.. .+
T Consensus 277 atn~~~~ld~al~rRf~~~i~i--------~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~---------------~t 333 (444)
T 2zan_A 277 ATNIPWVLDSAIRRRFEKRIYI--------PLPEAHARAAMFRLHLGSTQNSLTEADFQELGR---------------KT 333 (444)
T ss_dssp EESCGGGSCHHHHTTCCEEEEC--------CCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHH---------------HT
T ss_pred cCCCccccCHHHHhhcceEEEe--------CCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH---------------Hc
Confidence 999763 122211111 12233333333322 223333466665555543 12
Q ss_pred cccCHHHHHHHHHHHHHHH
Q 003809 574 YRMTVRQLEALIRLSEAIA 592 (794)
Q Consensus 574 ~~iT~R~LesliRlseA~A 592 (794)
.++|.+.|..+++-|...|
T Consensus 334 ~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 334 DGYSGADISIIVRDALMQP 352 (444)
T ss_dssp TTCCHHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3578899999998775433
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.93 E-value=1.7e-09 Score=132.04 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=85.9
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc---cee-ecCCccCc---
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR---SVY-TSGKSSSA--- 426 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~---~~~-~~g~~ss~--- 426 (794)
+...|+|++.+++.+.-++...... ..+ .-|..-++||+||||||||+++++++..+.+ .+. ........
T Consensus 556 l~~~viG~~~a~~~l~~~i~~~~~g-~~~--~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 556 LHKRVVGQDEAIRAVADAIRRARAG-LKD--PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHGGG-CSC--SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred HhcccCCcHHHHHHHHHHHHHHhcc-cCC--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 3456899998887776655322100 000 0011238999999999999999999998733 222 21111111
Q ss_pred -ccccccc---ccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEe
Q 003809 427 -AGLTASV---AKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAA 502 (794)
Q Consensus 427 -~gLt~~v---~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAa 502 (794)
..+.+.. +.....|.+ .+++..+.+||+||||++++++..++.|+++|+++.++-. .|....+ .++.||+|
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l---~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~iiI~t 707 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQL---TEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIILT 707 (854)
T ss_dssp GGGC--------------CH---HHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEEE
T ss_pred HHHHcCCCCCCcCccccchH---HHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEEEEe
Confidence 0111100 000000111 1223334578999999999999999999999999998743 3444444 36889999
Q ss_pred cCC
Q 003809 503 ANP 505 (794)
Q Consensus 503 aNP 505 (794)
+|.
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 997
No 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.91 E-value=4.1e-09 Score=112.34 Aligned_cols=201 Identities=14% Similarity=0.122 Sum_probs=117.9
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC-c----c-eeecCCccCcc
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP-R----S-VYTSGKSSSAA 427 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p-~----~-~~~~g~~ss~~ 427 (794)
-+.+++|++.+++.+.-.+..+.. -|+||+||||||||++++.+++.+. . . +..... ...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~~~ 80 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNI------------PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS--DER 80 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCC------------CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT--STT
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCC------------CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc--ccc
Confidence 344688999998877766554431 1799999999999999999998741 1 1 111111 100
Q ss_pred ccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 428 GLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 428 gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
+. ...++. -..+. ....+..+..++++|||++.++...+++|+..|+. .+.++.+|+++|...
T Consensus 81 ~~--~~~~~~-~~~~~-~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 81 GI--DVVRHK-IKEFA-RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-------------YSKSCRFILSCNYVS 143 (319)
T ss_dssp CT--TTSSHH-HHHHH-HSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGG
T ss_pred Ch--HHHHHH-HHHHH-hcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChh
Confidence 10 000000 00000 01111224568999999999999999999999875 234677888888643
Q ss_pred CCCCCCCCccCc-ccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHH
Q 003809 508 GRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALI 585 (794)
Q Consensus 508 Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~Lesli 585 (794)
++. ..+..+ ....-++++.+.+..++... +.....+++++.+.|... ++-++|.+.+++
T Consensus 144 -~l~--~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~----------------~~G~~r~~~~~l 204 (319)
T 2chq_A 144 -RII--EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYI----------------SGGDFRKAINAL 204 (319)
T ss_dssp -GSC--HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHT----------------TTTCHHHHHHHH
T ss_pred -hcc--hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------------cCCCHHHHHHHH
Confidence 111 011100 11112346677777777543 345567899888877641 123567776666
Q ss_pred HHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 586 RLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 586 RlseA~Arl~~~~~V~~~dv~eAi 609 (794)
..+ +.. ...|+.++|..++
T Consensus 205 ~~~---~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 205 QGA---AAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHH---HHS--SSCBCHHHHHHHT
T ss_pred HHH---HHc--CCCCCHHHHHHHH
Confidence 433 222 4579999988764
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=2.5e-09 Score=114.46 Aligned_cols=208 Identities=15% Similarity=0.184 Sum_probs=122.7
Q ss_pred HHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcc-----ee-ec
Q 003809 347 FNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRS-----VY-TS 420 (794)
Q Consensus 347 ~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~-----~~-~~ 420 (794)
.++....-+.+++|++.++..+.-.+.+|... |+||+||||||||++++.+++.+... +. ..
T Consensus 16 ~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~ 83 (327)
T 1iqp_A 16 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMP------------HLLFAGPPGVGKTTAALALARELFGENWRHNFLELN 83 (327)
T ss_dssp HHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCC------------EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE
T ss_pred hhccCCCCHHHhhCCHHHHHHHHHHHHcCCCC------------eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee
Confidence 34444444567999999999888777665322 79999999999999999999874211 11 11
Q ss_pred CCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEE
Q 003809 421 GKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSIL 500 (794)
Q Consensus 421 g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~sii 500 (794)
.. ...+. ...+.. -..+ ...+.+..+..++++|||++.+++..+++|+..|+.. +..+.+|
T Consensus 84 ~~--~~~~~--~~~~~~-~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i 144 (327)
T 1iqp_A 84 AS--DERGI--NVIREK-VKEF-ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFI 144 (327)
T ss_dssp TT--CHHHH--HTTHHH-HHHH-HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEE
T ss_pred cc--ccCch--HHHHHH-HHHH-HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEE
Confidence 10 00000 000000 0001 0122232356789999999999999999999999863 2356677
Q ss_pred EecCCCCCCCCCCCCccCc-ccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCH
Q 003809 501 AAANPAGGRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTV 578 (794)
Q Consensus 501 AaaNP~~Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~ 578 (794)
.++|.... .. ..+..+ ....-++++.+.+..++... +.....+++++.+.|.... +-++
T Consensus 145 ~~~~~~~~-l~--~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----------------~g~~ 205 (327)
T 1iqp_A 145 LSCNYSSK-II--EPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA----------------EGDM 205 (327)
T ss_dssp EEESCGGG-SC--HHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH----------------TTCH
T ss_pred EEeCCccc-cC--HHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHC----------------CCCH
Confidence 77775421 10 011100 11112346777777777544 3345568888888776532 2356
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 579 RQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 579 R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
|.+.++++.+.. ....++.++|..++
T Consensus 206 r~~~~~l~~~~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 206 RRAINILQAAAA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HHHHHHHHHHHT-----TCSEECHHHHHHHT
T ss_pred HHHHHHHHHHHh-----cCCCCCHHHHHHHH
Confidence 887777754432 22367888776654
No 58
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.89 E-value=4.4e-09 Score=139.57 Aligned_cols=227 Identities=19% Similarity=0.241 Sum_probs=128.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee--c-CCccCccccccccccCCCCcccccccCceeec----CCCeEEecccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT--S-GKSSSAAGLTASVAKEPETGEFCIEAGALMLA----DNGICCIDEFD 463 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~--~-g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~la----d~GIl~IDE~d 463 (794)
|+||+||||||||++++.+....+..... . ...+++..+...+... . .......|.+... ...|+||||+|
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~-~-~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRH-T-NYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHH-B-CCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred eEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHH-h-hhccccCCccccCCCCCceEEEEecccc
Confidence 89999999999999995555444332221 1 1111111111111100 0 0000112322222 34599999998
Q ss_pred cCChh------hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC--CCCCCCCCCccCcccccC-ccccHHHHHH
Q 003809 464 KMDIR------DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA--GGRYDKSKPLKKHEDALA-PAFTTAQLKR 534 (794)
Q Consensus 464 k~~~~------~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~--~Gryd~~~~l~~~~~~~~-~~~~~~~lr~ 534 (794)
....+ ....|.+.||.+.+...+.+....+ .++.++||+||+ +||+.-+..+.++-..+. +..+.+.+++
T Consensus 1347 mp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~ 1425 (2695)
T 4akg_A 1347 LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQ 1425 (2695)
T ss_dssp CSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHH
T ss_pred cccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHH
Confidence 64433 5778999999998888776666666 689999999999 578755444432221111 1223333332
Q ss_pred HHH-HHh---ccCC---cCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHH-HHHHHhcCC--CCcCHHH
Q 003809 535 YIA-YAK---TLKP---KLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLS-EAIARSHLE--TQVHPRH 604 (794)
Q Consensus 535 yi~-~ar---~~~P---~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRls-eA~Arl~~~--~~V~~~d 604 (794)
.+. +.+ .+.| .+.+......++.|..++..-.. ..+.+|-+++|.|-++++-- .+....... +.+-.--
T Consensus 1426 I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~-~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw 1504 (2695)
T 4akg_A 1426 IYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYST-GLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLW 1504 (2695)
T ss_dssp HHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCT-TTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHH
Confidence 221 111 2222 34566777888889887765432 25778999999998887632 332211111 1222234
Q ss_pred HHHHHHHHhhhcccccC
Q 003809 605 VRVAVRLLKTSVISVES 621 (794)
Q Consensus 605 v~eAi~L~~~s~~~~~~ 621 (794)
+.||.|+|.+++++-++
T Consensus 1505 ~HE~~Rvf~DRLv~~~D 1521 (2695)
T 4akg_A 1505 AYEAWRIFADRLVGVKE 1521 (2695)
T ss_dssp HHHHHHHHTTTCCSSHH
T ss_pred HHHHHHHHHHhcCCHHH
Confidence 56788888888876543
No 59
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.86 E-value=3.2e-08 Score=99.86 Aligned_cols=209 Identities=14% Similarity=0.067 Sum_probs=120.0
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCcc---------
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSS--------- 424 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~s--------- 424 (794)
.+..++|++.++..+.-.+..+... -.++|+|+||+|||++++.+++.+...........
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~-----------~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIH-----------HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 89 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCC-----------SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCC-----------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3456899999988887777654311 16899999999999999999886533211100000
Q ss_pred ---CccccccccccCCCCcc----ccccc-C-ceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecC
Q 003809 425 ---SAAGLTASVAKEPETGE----FCIEA-G-ALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNA 495 (794)
Q Consensus 425 ---s~~gLt~~v~~d~~~g~----~~~~~-G-al~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~a 495 (794)
....+... ........ ..+.. . ........+++|||++.+++..+..|+..+++. +.
T Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~ 155 (250)
T 1njg_A 90 EQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PE 155 (250)
T ss_dssp HTTCCSSEEEE-ETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CT
T ss_pred hccCCcceEEe-cCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-------------CC
Confidence 00000000 00000000 00000 0 001123569999999999999999999998752 34
Q ss_pred ceEEEEecCCCCCCCCCCCCccCc-ccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccc
Q 003809 496 RTSILAAANPAGGRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVA 573 (794)
Q Consensus 496 r~siiAaaNP~~Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~ 573 (794)
++.+|+++|.... ... .+..+ ....-++++.+.++.++... ......+++++.+.|.+..
T Consensus 156 ~~~~i~~t~~~~~-~~~--~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~--------------- 217 (250)
T 1njg_A 156 HVKFLLATTDPQK-LPV--TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA--------------- 217 (250)
T ss_dssp TEEEEEEESCGGG-SCH--HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH---------------
T ss_pred ceEEEEEeCChHh-CCH--HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc---------------
Confidence 5777777775321 110 01111 01112346777777776543 3345678888777776531
Q ss_pred cccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 574 YRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 574 ~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
+-.+|.+..+++.+.+ .....|+.+||++|+.
T Consensus 218 -~G~~~~~~~~~~~~~~----~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 218 -EGSLRDALSLTDQAIA----SGDGQVSTQAVSAMLG 249 (250)
T ss_dssp -TTCHHHHHHHHHHHHT----TTTSSBCHHHHHHHSC
T ss_pred -CCCHHHHHHHHHHHHh----ccCceecHHHHHHHhC
Confidence 1257888888775532 3345899999998863
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.85 E-value=3.3e-08 Score=100.56 Aligned_cols=176 Identities=13% Similarity=0.143 Sum_probs=103.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc----eeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS----VYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~----~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
+++|+||||||||++++.+++.+... .+... ..+..... . .+. .+...++++|||++.++
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-----~~~~~~~~------~-~~~----~~~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-----GIHASIST------A-LLE----GLEQFDLICIDDVDAVA 117 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-----GGGGGSCG------G-GGT----TGGGSSEEEEETGGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-----HHHHHHHH------H-HHH----hccCCCEEEEecccccc
Confidence 89999999999999999998875421 22111 01111000 0 000 12456899999999998
Q ss_pred hhh--HHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCCCC-CCccCc----ccccCccccHHHHHHHHHHH
Q 003809 467 IRD--QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKS-KPLKKH----EDALAPAFTTAQLKRYIAYA 539 (794)
Q Consensus 467 ~~~--~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~-~~l~~~----~~~~~~~~~~~~lr~yi~~a 539 (794)
... +..|+..++... . .....+|.++|.....+... ..+..+ ....-+.++.+.+..++...
T Consensus 118 ~~~~~~~~l~~~l~~~~----~-------~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 118 GHPLWEEAIFDLYNRVA----E-------QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp TCHHHHHHHHHHHHHHH----H-------HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH----H-------cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHH
Confidence 766 778888875421 0 11233555555443322211 111100 00111234445555555432
Q ss_pred -hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 540 -KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 540 -r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
+.....+++++.+.|..++ +-++|.+..+++.+.+.|.... ..|+.+|+++|+.
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~----------------~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 187 AAMRGLQLPEDVGRFLLNRM----------------ARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHTTCCCCHHHHHHHHHHT----------------TTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHcCCCCCHHHHHHHHHHc----------------cCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 2344568888887776531 2357999999998888886655 4699999999874
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.82 E-value=2.3e-08 Score=109.30 Aligned_cols=230 Identities=16% Similarity=0.135 Sum_probs=128.4
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC---------Ccce-eecCC-cc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV---------PRSV-YTSGK-SS 424 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~---------p~~~-~~~g~-~s 424 (794)
+.++|++.....+.-.+-..... ...-+++|+||||||||++++.+++.+ +..+ +.... ..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG--------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS--------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 56889988887776655321100 011289999999999999999999876 2222 22211 11
Q ss_pred CccccccccccC-----CCCcc---cccccCceeecCCC---eEEecccccCChh--hHHHHHHHhhccEEEEeecceEE
Q 003809 425 SAAGLTASVAKE-----PETGE---FCIEAGALMLADNG---ICCIDEFDKMDIR--DQVAIHEAMEQQTISITKAGIQA 491 (794)
Q Consensus 425 s~~gLt~~v~~d-----~~~g~---~~~~~Gal~lad~G---Il~IDE~dk~~~~--~~~~L~eame~~~isi~kaG~~~ 491 (794)
+...+...+... +..+. -.+..-.-.+...| +++|||++.+... .+..|...++...-.
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~-------- 162 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL-------- 162 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--------
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc--------
Confidence 111111110000 00010 00000000011233 9999999999876 666676665421100
Q ss_pred eecCceEEEEecCCCC--CCCCCCCCccCc-ccccCccccHHHHHHHHHHH-hc--cCCcCCHHHHHHHHHHHHHhccCC
Q 003809 492 TLNARTSILAAANPAG--GRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYA-KT--LKPKLSLEARKLLVDSYVALRRGD 565 (794)
Q Consensus 492 ~l~ar~siiAaaNP~~--Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~a-r~--~~P~ls~ea~~~L~~~Y~~lR~~~ 565 (794)
..+.++.+|+++|... ..++....-+.. ....-++++.+.+..++... .. ....+++++.+.+.++...
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 237 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR----- 237 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHS-----
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH-----
Confidence 0034688899998763 122110000000 01122456777777776543 21 2456788888777664431
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhh
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKT 614 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~ 614 (794)
.+-.+|.+..+++.+...|....+..|+.+|+..|+.-+..
T Consensus 238 --------~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 238 --------EHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp --------SSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred --------hccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 12458999999999998998888899999999999987643
No 62
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.79 E-value=9.1e-09 Score=107.00 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=31.7
Q ss_pred cccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 574 YRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 574 ~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
.+.+.|+|+++++-|...|..+....|+.+|+++|+
T Consensus 218 ~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 218 PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 356789999999999988888888899999999985
No 63
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=8.1e-09 Score=112.33 Aligned_cols=176 Identities=19% Similarity=0.191 Sum_probs=100.8
Q ss_pred HhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcce----eecCCcc
Q 003809 349 KIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSV----YTSGKSS 424 (794)
Q Consensus 349 ~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~----~~~g~~s 424 (794)
+..-.-+..++|++.++..|...+-.|... |+||+||||||||++++++++.+.... +.....+
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~------------~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLP------------HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTTCCC------------CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhcCCCc------------eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 333334456889999999888888776422 799999999999999999998753211 1110111
Q ss_pred CccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecC
Q 003809 425 SAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAAN 504 (794)
Q Consensus 425 s~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaN 504 (794)
...|. ..+++. -+.+ ...+....+...|++|||++.|+...+++|+..||+. +..+.++.++|
T Consensus 86 ~~~~~--~~ir~~-i~~~-~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~n 148 (340)
T 1sxj_C 86 DDRGI--DVVRNQ-IKDF-ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-------------TKNTRFCVLAN 148 (340)
T ss_dssp SCCSH--HHHHTH-HHHH-HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEES
T ss_pred ccccH--HHHHHH-HHHH-HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-------------CCCeEEEEEec
Confidence 11110 011110 0000 0011112234579999999999999999999999863 23456667777
Q ss_pred CCCCCCCCCCCccCc-ccccCccccHHHHHHHHHHHh-ccCCcCCHHHHHHHHH
Q 003809 505 PAGGRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYAK-TLKPKLSLEARKLLVD 556 (794)
Q Consensus 505 P~~Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~ar-~~~P~ls~ea~~~L~~ 556 (794)
+...-. .++..+ ....-++++.+.++.++...- .-...+++++...+..
T Consensus 149 ~~~~i~---~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~ 199 (340)
T 1sxj_C 149 YAHKLT---PALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIE 199 (340)
T ss_dssp CGGGSC---HHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHH
T ss_pred Cccccc---hhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 543110 001100 001123456677777765443 2345678877777655
No 64
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.75 E-value=1.2e-08 Score=107.37 Aligned_cols=166 Identities=11% Similarity=0.105 Sum_probs=89.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCc-ccccccCceeecCCCeEEecccccC----
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETG-EFCIEAGALMLADNGICCIDEFDKM---- 465 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g-~~~~~~Gal~lad~GIl~IDE~dk~---- 465 (794)
++||+||||||||++++++++.+...++.... +..+.+......... ...+. ....+..+++||||++.+
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~---~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~vl~iDEid~l~~~~ 140 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICS---PDKMIGFSETAKCQAMKKIFD--DAYKSQLSCVVVDDIERLLDYV 140 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC---GGGCTTCCHHHHHHHHHHHHH--HHHTSSEEEEEECCHHHHTTCB
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC---HHHhcCCchHHHHHHHHHHHH--HHHhcCCcEEEEEChhhhhccC
Confidence 89999999999999999999986554332211 111111000000000 00000 001134689999999987
Q ss_pred --ChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC--------CCCCCCCCCccCcccccCccccH-HHHHH
Q 003809 466 --DIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA--------GGRYDKSKPLKKHEDALAPAFTT-AQLKR 534 (794)
Q Consensus 466 --~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~--------~Gryd~~~~l~~~~~~~~~~~~~-~~lr~ 534 (794)
++..+..+++++.... +.....+.++.+|+|+|+. .+||.....+ |+++. +.+..
T Consensus 141 ~~~~~~~~~~l~~L~~~~------~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~--------p~l~~r~~i~~ 206 (272)
T 1d2n_A 141 PIGPRFSNLVLQALLVLL------KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--------PNIATGEQLLE 206 (272)
T ss_dssp TTTTBCCHHHHHHHHHHT------TCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC--------CCEEEHHHHHH
T ss_pred CCChhHHHHHHHHHHHHh------cCccCCCCCEEEEEecCChhhcchhhhhcccceEEcC--------CCccHHHHHHH
Confidence 3333334444432210 0011123468899999976 2444222211 23333 66666
Q ss_pred HHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHH
Q 003809 535 YIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEA 590 (794)
Q Consensus 535 yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA 590 (794)
++... ..+++++...|..... ...|+.++|++..+++.+..
T Consensus 207 i~~~~----~~~~~~~~~~l~~~~~-----------g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 207 ALELL----GNFKDKERTTIAQQVK-----------GKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp HHHHH----TCSCHHHHHHHHHHHT-----------TSEEEECHHHHHHHHHHHTT
T ss_pred HHHhc----CCCCHHHHHHHHHHhc-----------CCCccccHHHHHHHHHHHhh
Confidence 66543 3567777777665321 12467789999888887654
No 65
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.73 E-value=1.8e-08 Score=106.45 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=31.2
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Q 003809 575 RMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAV 609 (794)
Q Consensus 575 ~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi 609 (794)
+.+.|+|+++++.|...|..+....|+.+|+.+|+
T Consensus 243 G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 243 GFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 46789999999999988888888899999999986
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.72 E-value=1.9e-07 Score=101.94 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=120.3
Q ss_pred HhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee----cCCcc
Q 003809 349 KIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT----SGKSS 424 (794)
Q Consensus 349 ~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~~s 424 (794)
+....-+.+++|++.+++.+.-++..|... -.+||+||||||||++++.+++.+...... ++...
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~-----------~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSLGRIH-----------HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHHTCCC-----------SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHhCCCC-----------eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 333334557899999988887777654311 047999999999999999999875432110 00000
Q ss_pred --------CccccccccccCCCCc--c--cccc-cCce-eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceE
Q 003809 425 --------SAAGLTASVAKEPETG--E--FCIE-AGAL-MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQ 490 (794)
Q Consensus 425 --------s~~gLt~~v~~d~~~g--~--~~~~-~Gal-~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~ 490 (794)
...++.. +......+ . ..+. .... ..+...|++|||++.++...+++|+..+++
T Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~----------- 145 (373)
T 1jr3_A 78 NCREIEQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE----------- 145 (373)
T ss_dssp HHHHHHTSCCSSCEE-EETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-----------
T ss_pred HHHHHhccCCCceEE-ecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-----------
Confidence 0000000 00000000 0 0000 0000 122356999999999999999999999975
Q ss_pred EeecCceEEEEecCCCCCCCCCCCCccCcc-cccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCC
Q 003809 491 ATLNARTSILAAANPAGGRYDKSKPLKKHE-DALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTP 568 (794)
Q Consensus 491 ~~l~ar~siiAaaNP~~Gryd~~~~l~~~~-~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~ 568 (794)
.+..+.+|.++|... ++.. .+..+- ...-++++.+.+..++... +.....+++++.+.|.+.
T Consensus 146 --~~~~~~~Il~~~~~~-~l~~--~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~----------- 209 (373)
T 1jr3_A 146 --PPEHVKFLLATTDPQ-KLPV--TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA----------- 209 (373)
T ss_dssp --CCSSEEEEEEESCGG-GSCH--HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH-----------
T ss_pred --CCCceEEEEEeCChH-hCcH--HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----------
Confidence 234566666666332 1110 111010 1112346777777777543 334556788887777542
Q ss_pred CCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 569 GSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 569 ~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
.+-++|.+.+++.-+.+. ....|+.+||.+++.
T Consensus 210 -----~~G~~r~~~~~l~~~~~~----~~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 210 -----AEGSLRDALSLTDQAIAS----GDGQVSTQAVSAMLG 242 (373)
T ss_dssp -----SSSCHHHHHHHHHHHHHH----TTTCBCHHHHHHHTT
T ss_pred -----CCCCHHHHHHHHHHHHHh----cCCcccHHHHHHHhC
Confidence 123578887777554332 246799999987653
No 67
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.71 E-value=2.8e-08 Score=107.02 Aligned_cols=124 Identities=19% Similarity=0.133 Sum_probs=79.6
Q ss_pred hcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccc
Q 003809 353 SIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTAS 432 (794)
Q Consensus 353 si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~ 432 (794)
.-+.++.|++.+++.+.-.+-.|... -.+|+.||||||||++++++++.+...++.... +..+ ..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~-----------~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~--~~~~--~~ 87 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIP-----------HIILHSPSPGTGKTTVAKALCHDVNADMMFVNG--SDCK--ID 87 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCC-----------SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET--TTCC--HH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCC-----------eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc--cccC--HH
Confidence 34457889999998888777765421 035677779999999999999988655443211 1111 11
Q ss_pred cccCCCCcccccccCceeecCCCeEEecccccCC-hhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 433 VAKEPETGEFCIEAGALMLADNGICCIDEFDKMD-IRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~-~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
..+... ..+. .. .-.....++++|||++.++ ...+..|+..|+.. +.++.+|+++|+..
T Consensus 88 ~i~~~~-~~~~-~~-~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-------------~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 88 FVRGPL-TNFA-SA-ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-------------SSNCSIIITANNID 147 (324)
T ss_dssp HHHTHH-HHHH-HB-CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-------------GGGCEEEEEESSGG
T ss_pred HHHHHH-HHHH-hh-cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc
Confidence 111100 0000 00 0011256799999999999 99999999999853 24678888999754
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.70 E-value=3.7e-08 Score=107.99 Aligned_cols=233 Identities=12% Similarity=0.081 Sum_probs=131.5
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccce--eEEEeCCCcchHHHHHHHHHhhCCcc-----eeec-CCccCcc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDI--NVCIVGDPSCAKSQFLKYAAGIVPRS-----VYTS-GKSSSAA 427 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~i--niLLvG~PGtGKS~Ll~~i~~~~p~~-----~~~~-g~~ss~~ 427 (794)
+.++|++.....+.-.+...... +..- +++|+||||||||++++.++..+... ++.. ....+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 56888887776665555432100 0111 69999999999999999999886432 2222 1111111
Q ss_pred ccccccccC-----CCCccc---ccc-cCceeecCCC--eEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCc
Q 003809 428 GLTASVAKE-----PETGEF---CIE-AGALMLADNG--ICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNAR 496 (794)
Q Consensus 428 gLt~~v~~d-----~~~g~~---~~~-~Gal~lad~G--Il~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar 496 (794)
.+...+... +..+.. ... ......+.++ +++|||++.++...+..|..++++.. + ....+
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~------~---~~~~~ 159 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD------K---LGAFR 159 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH------H---HSSCC
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCC------C---CCcCC
Confidence 111111000 000000 000 0000111233 89999999999999999999886431 0 00136
Q ss_pred eEEEEecCCCC--CCCCCCCCcc-CcccccCccccHHHHHHHHHHHhc--c-CCcCCHHHHHHHHHHHHHhccCCCCCCC
Q 003809 497 TSILAAANPAG--GRYDKSKPLK-KHEDALAPAFTTAQLKRYIAYAKT--L-KPKLSLEARKLLVDSYVALRRGDTTPGS 570 (794)
Q Consensus 497 ~siiAaaNP~~--Gryd~~~~l~-~~~~~~~~~~~~~~lr~yi~~ar~--~-~P~ls~ea~~~L~~~Y~~lR~~~~~~~~ 570 (794)
+.+|+++|... .+++....-+ ......-++++.+.+..++...-. . ...+++++.+.+.++.... . +
T Consensus 160 ~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-----~ 232 (389)
T 1fnn_A 160 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ--T-----P 232 (389)
T ss_dssp EEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS--S-----T
T ss_pred EEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc--c-----c
Confidence 77888877542 1121100000 000122345777777777754322 2 3478888888776643110 0 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 571 RVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 571 ~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
..+++-.+|.+..+++.+...|..+....|+.+|+.+|+.-.
T Consensus 233 ~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 233 LDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp TCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 012245789999999999999988888999999999998764
No 69
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.69 E-value=9.1e-08 Score=127.15 Aligned_cols=187 Identities=19% Similarity=0.230 Sum_probs=125.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
.+++.||||||||.+++.+++.+.+.++.... ..++..... |. +-.|+ ...|.++|+|||++++++.+
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc---~e~ld~~~l-----g~--~~~g~--~~~Gaw~~~DE~nr~~~evL 714 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNC---DDSFDYQVL-----SR--LLVGI--TQIGAWGCFDEFNRLDEKVL 714 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTCCCEEEET---TSSCCHHHH-----HH--HHHHH--HHHTCEEEEETTTSSCHHHH
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCCcEEEEEC---CCCCChhHh-----hH--HHHHH--HhcCCEeeehhhhhcChHHH
Confidence 57999999999999999999999987765311 112221111 10 01111 12467999999999999998
Q ss_pred HHH-------HHHhhccEEEEeecceEEeecCceEEEEecCCCC-CCCCCCCCccC--cccccCccccHHHHHHHHHHHh
Q 003809 471 VAI-------HEAMEQQTISITKAGIQATLNARTSILAAANPAG-GRYDKSKPLKK--HEDALAPAFTTAQLKRYIAYAK 540 (794)
Q Consensus 471 ~~L-------~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~-Gryd~~~~l~~--~~~~~~~~~~~~~lr~yi~~ar 540 (794)
+++ .++|.++..++.-.|....++..+.+++|+||.. ||..-...++. +.-.+. .-+.+.+...+.++.
T Consensus 715 s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~-~Pd~~~i~ei~l~s~ 793 (2695)
T 4akg_A 715 SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMK-SPQSGTIAEMILQIM 793 (2695)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEee-CCCHHHHHHHHHHhc
Confidence 887 7778777656666688889999999999999953 33322222221 111121 124455555555543
Q ss_pred ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhc
Q 003809 541 TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSH 595 (794)
Q Consensus 541 ~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~ 595 (794)
.+.........++..|..+|..-. ...+|..+.|.+.++++.|....+-.
T Consensus 794 --Gf~~a~~la~kiv~~~~l~~e~ls---~q~hydfglRalksvL~~ag~lkr~~ 843 (2695)
T 4akg_A 794 --GFEDSKSLASKIVHFLELLSSKCS---SMNHYHFGLRTLKGVLRNCSPLISEF 843 (2695)
T ss_dssp --HCSSHHHHHHHHHHHHHHHHHHSC---CCTTCCCSHHHHHHHHHHHHHHHHHS
T ss_pred --CCCchHHHHHHHHHHHHHHHHHhC---cCCcccccHHHHHHHHHHHHHhhccC
Confidence 344467778889999998887543 23568889999999999887766554
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.68 E-value=1.4e-07 Score=113.69 Aligned_cols=214 Identities=15% Similarity=0.155 Sum_probs=118.1
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc----------ceeecCCcc
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR----------SVYTSGKSS 424 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~----------~~~~~g~~s 424 (794)
+..++|++...+.+.-.|..... -|+||+||||||||++++.++..+.. .++....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~------------~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~-- 250 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRK------------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI-- 250 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSS------------CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC--
T ss_pred CCCccCCHHHHHHHHHHHhccCC------------CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH--
Confidence 34578998887776666654321 28999999999999999999987522 1111100
Q ss_pred CccccccccccCCCCcccc--cc--cCceeecCCCeEEecccccCC---------hhhHHHHHHHhhccEEEEeecceEE
Q 003809 425 SAAGLTASVAKEPETGEFC--IE--AGALMLADNGICCIDEFDKMD---------IRDQVAIHEAMEQQTISITKAGIQA 491 (794)
Q Consensus 425 s~~gLt~~v~~d~~~g~~~--~~--~Gal~lad~GIl~IDE~dk~~---------~~~~~~L~eame~~~isi~kaG~~~ 491 (794)
..+.+. ....|.+. +. -..+..+.++|+||||++.+. .+..+.|..+++.+
T Consensus 251 --~~l~~~---~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~----------- 314 (758)
T 1r6b_X 251 --GSLLAG---TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG----------- 314 (758)
T ss_dssp --C---CC---CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC-----------
T ss_pred --HHHhcc---ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC-----------
Confidence 011100 01112111 00 001112346899999999882 22233444544432
Q ss_pred eecCceEEEEecCCCC--CCCCCCCCccCccccc-CccccHHHHHHHHHHH-----hccCCcCCHHHHHHHHHHHHHhcc
Q 003809 492 TLNARTSILAAANPAG--GRYDKSKPLKKHEDAL-APAFTTAQLKRYIAYA-----KTLKPKLSLEARKLLVDSYVALRR 563 (794)
Q Consensus 492 ~l~ar~siiAaaNP~~--Gryd~~~~l~~~~~~~-~~~~~~~~lr~yi~~a-----r~~~P~ls~ea~~~L~~~Y~~lR~ 563 (794)
++.+|+|+|+.. +++.....+..+-..+ -+..+.+....++... ......+++++...+.......-
T Consensus 315 ----~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i- 389 (758)
T 1r6b_X 315 ----KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI- 389 (758)
T ss_dssp ----CCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHC-
T ss_pred ----CeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhc-
Confidence 467888888753 3443333333111111 1223444433333222 12356788988887775433221
Q ss_pred CCCCCCCccccccCHHHHHHHHHHHHHHHHh----cCCCCcCHHHHHHHHHHH
Q 003809 564 GDTTPGSRVAYRMTVRQLEALIRLSEAIARS----HLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 564 ~~~~~~~~~~~~iT~R~LesliRlseA~Arl----~~~~~V~~~dv~eAi~L~ 612 (794)
..+..+..+..+++-+.+.+++ .....|+.+|+.+++.-+
T Consensus 390 ---------~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 390 ---------NDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp ---------TTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred ---------ccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 1123456677788777777777 346789999999988654
No 71
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.6e-07 Score=100.23 Aligned_cols=204 Identities=17% Similarity=0.162 Sum_probs=117.6
Q ss_pred cCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc-----ceeecCCccCccc
Q 003809 354 IGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR-----SVYTSGKSSSAAG 428 (794)
Q Consensus 354 i~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~-----~~~~~g~~ss~~g 428 (794)
-+.+++|++.++..+.-.+..+... |+||+||||+|||++++.+++.+.. .+... ..+...+
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~-~~~~~~~ 85 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMP------------HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL-NASDDRG 85 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCC------------CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE-CTTSCCS
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCC------------eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe-cCccccC
Confidence 3446889999998887777665422 7999999999999999999987421 11111 1111111
Q ss_pred cccccccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC
Q 003809 429 LTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG 508 (794)
Q Consensus 429 Lt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G 508 (794)
. ...++. -..+.-....+......+++|||++.++...+++|+..+++. +..+.+|.++|+...
T Consensus 86 ~--~~i~~~-~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 86 I--DVVRNQ-IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-------------SNSTRFAFACNQSNK 149 (323)
T ss_dssp H--HHHHTH-HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGGG
T ss_pred h--HHHHHH-HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-------------CCCceEEEEeCChhh
Confidence 0 001100 000000000010123569999999999999999999999752 245667777776421
Q ss_pred CCCCCCCccCc-ccccCccccHHHHHHHHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHH
Q 003809 509 RYDKSKPLKKH-EDALAPAFTTAQLKRYIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIR 586 (794)
Q Consensus 509 ryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliR 586 (794)
.. ..+..+ ....-++++.+.+..++... +.....+++++.+.|.+.. +-++|.+.+++.
T Consensus 150 -l~--~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----------------~G~~r~a~~~l~ 210 (323)
T 1sxj_B 150 -II--EPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTA----------------EGDMRQAINNLQ 210 (323)
T ss_dssp -SC--HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH----------------TTCHHHHHHHHH
T ss_pred -ch--hHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------------CCCHHHHHHHHH
Confidence 10 011100 11112346777777777543 3344568888888776632 124677666665
Q ss_pred HHHHHHHhcCCCCcCHHHHHHHHH
Q 003809 587 LSEAIARSHLETQVHPRHVRVAVR 610 (794)
Q Consensus 587 lseA~Arl~~~~~V~~~dv~eAi~ 610 (794)
-.... ...|+.++|.+++.
T Consensus 211 ~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 211 STVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp HHHHH-----HSSBCHHHHHHHHT
T ss_pred HHHhc-----CCCcCHHHHHHHHC
Confidence 33211 14699999988764
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.67 E-value=3.9e-09 Score=126.69 Aligned_cols=142 Identities=19% Similarity=0.192 Sum_probs=80.0
Q ss_pred ceechhhHHHHHHHHHhCCcc-cccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCcccccccccc
Q 003809 357 TVFGHQDIKRAILLMLLGGVH-KLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAK 435 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~-~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~ 435 (794)
+|.|.+.+|+.|.-.+.-... ........++-.-++||+||||||||+++++++..+...++.. +.+.|....+.
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v----~~~~l~s~~vG 553 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI----KGPELLTMWFG 553 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC----CHHHHHTTTCS
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEe----ccchhhccccc
Confidence 467889999987655433211 0111111223334699999999999999999999988776642 12222222111
Q ss_pred CCCCcccccccCceeec---CCCeEEecccccCChh--------------hHHHHHHHhhccEEEEeecceEEeecCceE
Q 003809 436 EPETGEFCIEAGALMLA---DNGICCIDEFDKMDIR--------------DQVAIHEAMEQQTISITKAGIQATLNARTS 498 (794)
Q Consensus 436 d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~~--------------~~~~L~eame~~~isi~kaG~~~~l~ar~s 498 (794)
. .+..+. -.+..| ..+|+||||+|.+-.. ..+.|+..|+.-. -..++.
T Consensus 554 e---se~~vr-~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----------~~~~V~ 618 (806)
T 3cf2_A 554 E---SEANVR-EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVF 618 (806)
T ss_dssp S---CHHHHH-HHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-----------SSSSEE
T ss_pred h---HHHHHH-HHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----------CCCCEE
Confidence 1 111111 011112 3579999999976322 2455666665321 124689
Q ss_pred EEEecCCCC---------CCCCCCCCcc
Q 003809 499 ILAAANPAG---------GRYDKSKPLK 517 (794)
Q Consensus 499 iiAaaNP~~---------Gryd~~~~l~ 517 (794)
||||||.+. ||||....+.
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~ 646 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEEC
Confidence 999999763 6776654443
No 73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.65 E-value=1.9e-08 Score=120.77 Aligned_cols=190 Identities=19% Similarity=0.185 Sum_probs=104.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceeecCC---ccCccccccccccCCCCcccccccCceeec---CCCeEEecccc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK---SSSAAGLTASVAKEPETGEFCIEAGALMLA---DNGICCIDEFD 463 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~---~ss~~gLt~~v~~d~~~g~~~~~~Gal~la---d~GIl~IDE~d 463 (794)
-+|||+||||||||+|++++++.+...++.... .+...|-+...++. .+..| ..+|+||||+|
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~-----------lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK-----------AFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHH-----------HHHHHTTSCSEEEEEESGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHH-----------HHHHHHHcCCeEEEEehhc
Confidence 379999999999999999999998876664211 01111111111111 11111 24799999999
Q ss_pred cCChh-----------hHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC---------CCCCCCCCccCccccc
Q 003809 464 KMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG---------GRYDKSKPLKKHEDAL 523 (794)
Q Consensus 464 k~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~---------Gryd~~~~l~~~~~~~ 523 (794)
.+-+. ..+.|+..|+.-. -+.++.||||||... |||+....+.
T Consensus 308 al~~~r~~~~~~~~~riv~~LL~~mdg~~-----------~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~------ 370 (806)
T 3cf2_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG------ 370 (806)
T ss_dssp GTCCTTTTCCCTTHHHHHHHHHTHHHHCC-----------GGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECC------
T ss_pred ccccccCCCCChHHHHHHHHHHHHHhccc-----------ccCCEEEEEecCChhhcCHHHhCCcccceEEecC------
Confidence 76532 2345666664321 123688999999652 4555443333
Q ss_pred CccccHHHHHHHHHHHh--c--cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcC---
Q 003809 524 APAFTTAQLKRYIAYAK--T--LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHL--- 596 (794)
Q Consensus 524 ~~~~~~~~lr~yi~~ar--~--~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~--- 596 (794)
.+...-|.-|.... . +.+.+. ...| +..+.+++.++|.++++-|...|.-+.
T Consensus 371 ---~Pd~~~R~~IL~~~l~~~~~~~dvd---l~~l---------------A~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~ 429 (806)
T 3cf2_A 371 ---IPDATGRLEILQIHTKNMKLADDVD---LEQV---------------ANETHGHVGADLAALCSEAALQAIRKKMDL 429 (806)
T ss_dssp ---CCCHHHHHHHHHHTCSSSEECTTCC---HHHH---------------HHHCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHhcCCCCCcccC---HHHH---------------HHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 33333333332221 1 111111 1111 123456789999999987765553221
Q ss_pred --------------CCCcCHHHHHHHHHHHhhhcc---cccCCcccccc
Q 003809 597 --------------ETQVHPRHVRVAVRLLKTSVI---SVESSEIDLSE 628 (794)
Q Consensus 597 --------------~~~V~~~dv~eAi~L~~~s~~---~~~~~~i~~~~ 628 (794)
.-.|+.+|...|+.-+..|.. .++.+.+.|++
T Consensus 430 i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~d 478 (806)
T 3cf2_A 430 IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWED 478 (806)
T ss_dssp GGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTT
T ss_pred ccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHH
Confidence 124777888888876655442 23455565554
No 74
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.64 E-value=1.1e-07 Score=104.35 Aligned_cols=216 Identities=16% Similarity=0.147 Sum_probs=121.0
Q ss_pred CceechhhHHHHHHHHHh----CCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC-----------Ccc-eee
Q 003809 356 PTVFGHQDIKRAILLMLL----GGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV-----------PRS-VYT 419 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~----gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~-----------p~~-~~~ 419 (794)
..++|++.....+.-.+. ++.. -+++|+||||||||++++.+++.+ ... ++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~------------~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVK------------FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCC------------CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCC------------CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 568888877666554332 2221 179999999999999999999865 222 222
Q ss_pred cCCc-c-CccccccccccC------CCCcc---cccccCceeecCCC-eEEecccccCChhh-HHH-HHHHhhccEEEEe
Q 003809 420 SGKS-S-SAAGLTASVAKE------PETGE---FCIEAGALMLADNG-ICCIDEFDKMDIRD-QVA-IHEAMEQQTISIT 485 (794)
Q Consensus 420 ~g~~-s-s~~gLt~~v~~d------~~~g~---~~~~~Gal~lad~G-Il~IDE~dk~~~~~-~~~-L~eame~~~isi~ 485 (794)
.... . +...+...+... +..+. ..+..-.-.+...+ +++|||++.+.... +.. +...++..
T Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----- 162 (384)
T 2qby_B 88 NCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----- 162 (384)
T ss_dssp EHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-----
T ss_pred ECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-----
Confidence 1110 0 111110000000 00000 00000000112233 99999999987653 445 44444321
Q ss_pred ecceEEeecCceEEEEecCCCC--CCCCCCCCcc-C-cccccCccccHHHHHHHHHHH-h-cc-CCcCCHHHHHHHHHHH
Q 003809 486 KAGIQATLNARTSILAAANPAG--GRYDKSKPLK-K-HEDALAPAFTTAQLKRYIAYA-K-TL-KPKLSLEARKLLVDSY 558 (794)
Q Consensus 486 kaG~~~~l~ar~siiAaaNP~~--Gryd~~~~l~-~-~~~~~~~~~~~~~lr~yi~~a-r-~~-~P~ls~ea~~~L~~~Y 558 (794)
.++.+|+++|..+ .+.++ .+. . .....-++++.+.+..++... + .+ ...+++++.+.+.++.
T Consensus 163 ---------~~~~iI~~t~~~~~~~~l~~--~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 163 ---------ANISVIMISNDINVRDYMEP--RVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp ---------SCEEEEEECSSTTTTTTSCH--HHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred ---------cceEEEEEECCCchHhhhCH--HHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 4788899998754 11111 110 0 011112456777777776543 2 22 3467888888887654
Q ss_pred HHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhh
Q 003809 559 VALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKT 614 (794)
Q Consensus 559 ~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~ 614 (794)
. ..+-.+|.+..+++.+...|. ....|+.+|+.+|+.-+..
T Consensus 232 ~-------------~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 232 A-------------KEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp H-------------TTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred H-------------hccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 2 113457999999998887776 5678999999999877643
No 75
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.60 E-value=1.8e-07 Score=106.58 Aligned_cols=200 Identities=14% Similarity=0.100 Sum_probs=105.3
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecC-CccCcccccccc
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSG-KSSSAAGLTASV 433 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g-~~ss~~gLt~~v 433 (794)
...|+|++...+.++-.|...... |+||+||||||||++++.++..+........ .+.....+.+.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~------------~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKN------------NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSC------------EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCCccCcHHHHHHHHHHHhccCCC------------CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-
Confidence 345899999888877777654322 8999999999999999999988532111000 00000000000
Q ss_pred ccCCCCccccccc----CceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC-
Q 003809 434 AKEPETGEFCIEA----GALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG- 508 (794)
Q Consensus 434 ~~d~~~g~~~~~~----Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G- 508 (794)
....|++.-.. ..+..+.++|+||| ...+.++.|..+|+.+ .+.+|+|+|+..-
T Consensus 246 --~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g---------------~v~vI~at~~~e~~ 304 (468)
T 3pxg_A 246 --TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDEYR 304 (468)
T ss_dssp ---------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTTTH
T ss_pred --ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC---------------CEEEEecCCHHHHH
Confidence 00112211110 01112357899999 4555667788887644 4778999998751
Q ss_pred -CCCCCCCccCc-ccccCccccHHHHHHHHHHHh-----ccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHH
Q 003809 509 -RYDKSKPLKKH-EDALAPAFTTAQLKRYIAYAK-----TLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQL 581 (794)
Q Consensus 509 -ryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~ar-----~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~L 581 (794)
.+.....+..+ ....-+..+.+.....+.... .....+++++...+..+...... .+..++..
T Consensus 305 ~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~----------~~~lp~~a 374 (468)
T 3pxg_A 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS----------DRFLPDKA 374 (468)
T ss_dssp HHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC----------CSCTTHHH
T ss_pred HHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc----------cCcCCcHH
Confidence 11111222211 111112335555555554332 24567899998888776543211 12335777
Q ss_pred HHHHHHHHHHHHhcCCC
Q 003809 582 EALIRLSEAIARSHLET 598 (794)
Q Consensus 582 esliRlseA~Arl~~~~ 598 (794)
..+++-+.+.+++....
T Consensus 375 i~ll~~a~~~~~~~~~~ 391 (468)
T 3pxg_A 375 IDLIDEAGSKVRLRSFT 391 (468)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccCC
Confidence 78888888888876643
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.58 E-value=1.9e-07 Score=98.88 Aligned_cols=216 Identities=20% Similarity=0.230 Sum_probs=106.5
Q ss_pred ceechhhHHHHHHHHHh---CCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCCccCccccccc
Q 003809 357 TVFGHQDIKRAILLMLL---GGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSSAAGLTAS 432 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~---gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss~~gLt~~ 432 (794)
+|.|.+.+|+.|.-.+. +.......-|..... +++|+||||||||+|+++++..++...+. .+.. +...
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~--GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~-----l~~~ 83 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPA--GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPE-----LLNM 83 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCS--EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTT-----TCSS
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCC--eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHH-----HHhh
Confidence 57788888877654332 221111111222211 39999999999999999999987764432 2221 1100
Q ss_pred cccCCCCcccccccCceee----cCCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEeecCce
Q 003809 433 VAKEPETGEFCIEAGALML----ADNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNART 497 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~l----ad~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~ 497 (794)
..++....-+.++. ....++++||++.+... ..+.++..|..+. .....
T Consensus 84 -----~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~~ 147 (274)
T 2x8a_A 84 -----YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQV 147 (274)
T ss_dssp -----TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----------STTCE
T ss_pred -----hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----------ccCCE
Confidence 00100000011110 12368999999975321 2233444443221 11246
Q ss_pred EEEEecCCC---------CCCCCCCCCccCcccccCccccHHHHHHHHHH-Hhc-cCCcCCHH-HHHHHHHHHHHhccCC
Q 003809 498 SILAAANPA---------GGRYDKSKPLKKHEDALAPAFTTAQLKRYIAY-AKT-LKPKLSLE-ARKLLVDSYVALRRGD 565 (794)
Q Consensus 498 siiAaaNP~---------~Gryd~~~~l~~~~~~~~~~~~~~~lr~yi~~-ar~-~~P~ls~e-a~~~L~~~Y~~lR~~~ 565 (794)
.++|++|.+ +|||+....+. .-+.+.-+..+.. .+. ..+.+..+ ..+.|..
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~--------~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~--------- 210 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVG--------LPPPADRLAILKTITKNGTKPPLDADVNLEAIAG--------- 210 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECC--------SCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHT---------
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeC--------CcCHHHHHHHHHHHHhcccCCCCccccCHHHHHH---------
Confidence 778888865 25665444333 1111111111111 111 11111111 0011100
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhc-----------CCCCcCHHHHHHHHHHHhhhc
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSH-----------LETQVHPRHVRVAVRLLKTSV 616 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~-----------~~~~V~~~dv~eAi~L~~~s~ 616 (794)
....-++|..+|.++++-|...|.-+ ....|+.+|+.+|+.-++.|+
T Consensus 211 ----~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 211 ----DLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp ----CSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC
T ss_pred ----hhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCC
Confidence 00123689999999999887666432 123699999999988766554
No 77
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=8.1e-07 Score=102.34 Aligned_cols=217 Identities=14% Similarity=0.119 Sum_probs=112.4
Q ss_pred CceechhhHHHHHHHHHhCCcccc----cCCCccc-ccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCcc-Ccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKL----THEGINL-RGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSS-SAAGL 429 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~----~~~g~~~-Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~s-s~~gL 429 (794)
.+|.|++.+++.+.-.+-...... ...|..- ...-++||+||||||||++++++++.+...++...... ....+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 368899988887766664311000 0001000 01138999999999999999999998865544321111 00000
Q ss_pred ccccccCC-----CCccccccc--CceeecCCCeEEecccccCChhhH---HHHHHHhhccEEEEeecceEEeecCceEE
Q 003809 430 TASVAKEP-----ETGEFCIEA--GALMLADNGICCIDEFDKMDIRDQ---VAIHEAMEQQTISITKAGIQATLNARTSI 499 (794)
Q Consensus 430 t~~v~~d~-----~~g~~~~~~--Gal~lad~GIl~IDE~dk~~~~~~---~~L~eame~~~isi~kaG~~~~l~ar~si 499 (794)
........ ..+-+ -.. +.......+|++|||++.+....+ ..|...++.. +.. +
T Consensus 119 ~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-------------~~~--i 182 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYF-KHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-------------STP--L 182 (516)
T ss_dssp HHHTGGGGTTBCCSTTTT-TC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-------------SSC--E
T ss_pred HHHHHHHHhccccHHHHH-hhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-------------CCC--E
Confidence 00000000 00000 000 001123467999999999988766 6777777642 122 3
Q ss_pred EEecCCCC-CCCCCCCCccCccc-ccCccccHHHHHHHHHH-HhccCCcCCHHHHHHHHHHHHHhccCCCCCCCcccccc
Q 003809 500 LAAANPAG-GRYDKSKPLKKHED-ALAPAFTTAQLKRYIAY-AKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRM 576 (794)
Q Consensus 500 iAaaNP~~-Gryd~~~~l~~~~~-~~~~~~~~~~lr~yi~~-ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~i 576 (794)
|.++|... ... .++..+.. ..-+.++.+.++.++.. +......+++++.+.|.+.. +-
T Consensus 183 Ili~~~~~~~~l---~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s----------------~G 243 (516)
T 1sxj_A 183 ILICNERNLPKM---RPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT----------------RG 243 (516)
T ss_dssp EEEESCTTSSTT---GGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT----------------TT
T ss_pred EEEEcCCCCccc---hhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------------CC
Confidence 33333221 111 11111111 11234567777776643 33344567888877776531 13
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Q 003809 577 TVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLL 612 (794)
Q Consensus 577 T~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~ 612 (794)
.+|++.+++..+ +. .+..|+.+++.+++...
T Consensus 244 diR~~i~~L~~~---~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 244 DIRQVINLLSTI---ST--TTKTINHENINEISKAW 274 (516)
T ss_dssp CHHHHHHHHTHH---HH--HSSCCCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHH---Hh--cCCCCchHHHHHHHHhh
Confidence 467776666533 22 34678999998877643
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.53 E-value=3.6e-08 Score=105.30 Aligned_cols=112 Identities=14% Similarity=0.015 Sum_probs=60.3
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCcee-------ecCCCeEEe
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALM-------LADNGICCI 459 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~-------lad~GIl~I 459 (794)
+....+||+||||||||+|++++++.+...++.... .++....... ....+ ...+. ....+|+||
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~----~~l~~~~~g~---~~~~i-~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSA----GELESGNAGE---PAKLI-RQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEH----HHHHCC---H---HHHHH-HHHHHHHHHHHTTSSCCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeH----HHhhhccCch---hHHHH-HHHHHHHHHHHhcCCCeEEEE
Confidence 344579999999999999999999988765553211 1111100000 00000 00111 225689999
Q ss_pred cccccCCh-------------hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 460 DEFDKMDI-------------RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 460 DE~dk~~~-------------~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
||+|++.+ ..+..|++.|+..............-..++.||+|||..
T Consensus 106 DEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~ 165 (293)
T 3t15_A 106 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF 165 (293)
T ss_dssp ECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC
T ss_pred echhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc
Confidence 99997765 234789999985543222111112224578999999965
No 79
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.46 E-value=5.5e-07 Score=101.70 Aligned_cols=183 Identities=11% Similarity=0.114 Sum_probs=101.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc-----c-eeecCCccCccccccccccCCCCcccccccCcee--ec-CCCeEEecc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR-----S-VYTSGKSSSAAGLTASVAKEPETGEFCIEAGALM--LA-DNGICCIDE 461 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~-----~-~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~--la-d~GIl~IDE 461 (794)
+++|+||||||||+|+++++..+.. . +|.+.. .+...+......+. ...+. .. ...+++|||
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~vL~IDE 202 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-----KFLNDLVDSMKEGK----LNEFREKYRKKVDILLIDD 202 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-----HHHHHHHHHHHTTC----HHHHHHHHTTTCSEEEEEC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-----HHHHHHHHHHHccc----HHHHHHHhcCCCCEEEEeC
Confidence 7999999999999999999987522 1 222111 11110000000000 00011 12 567999999
Q ss_pred cccCCh--hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCCCCC-CCCCccCcc----cccCccccHHHHHH
Q 003809 462 FDKMDI--RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYD-KSKPLKKHE----DALAPAFTTAQLKR 534 (794)
Q Consensus 462 ~dk~~~--~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd-~~~~l~~~~----~~~~~~~~~~~lr~ 534 (794)
++.+.. ..+..++..|+.-. ..| ...|+++.||... +. -...+..+- ...-++.+.+.+..
T Consensus 203 i~~l~~~~~~q~~l~~~l~~l~----~~~-------~~iIitt~~~~~~-l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~ 270 (440)
T 2z4s_A 203 VQFLIGKTGVQTELFHTFNELH----DSG-------KQIVICSDREPQK-LSEFQDRLVSRFQMGLVAKLEPPDEETRKS 270 (440)
T ss_dssp GGGGSSCHHHHHHHHHHHHHHH----TTT-------CEEEEEESSCGGG-CSSCCHHHHHHHHSSBCCBCCCCCHHHHHH
T ss_pred cccccCChHHHHHHHHHHHHHH----HCC-------CeEEEEECCCHHH-HHHHHHHHHhhccCCeEEEeCCCCHHHHHH
Confidence 999886 57777888775321 011 2344455554321 10 000111000 00112334555444
Q ss_pred HHHHH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 535 YIAYA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 535 yi~~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
++... +.....+++++.+.|... ++-++|.|+.+++.+.+.|.+..+ .|+.+++.+|+.-
T Consensus 271 iL~~~~~~~~~~i~~e~l~~la~~----------------~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~ 331 (440)
T 2z4s_A 271 IARKMLEIEHGELPEEVLNFVAEN----------------VDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHH----------------CCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTST
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHh----------------cCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 44322 233445777777666531 234689999999999999988775 6999999988754
No 80
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.45 E-value=6.9e-07 Score=97.29 Aligned_cols=225 Identities=17% Similarity=0.169 Sum_probs=123.6
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC------cc-eeecCC-ccCcc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP------RS-VYTSGK-SSSAA 427 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p------~~-~~~~g~-~ss~~ 427 (794)
..++|++.....+.-.+...... +..-+++|+|+||||||+|++.+++.++ .. ++.... ..+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~--------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 91 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE--------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPY 91 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT--------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHH
Confidence 56888888777766555421100 0111799999999999999999998762 22 222111 00100
Q ss_pred ccccccccC-----CCCcc-c-c-ccc--Cceeec-CCCeEEecccccCC----hhhHHHHHHHhhccEEEEeecceEEe
Q 003809 428 GLTASVAKE-----PETGE-F-C-IEA--GALMLA-DNGICCIDEFDKMD----IRDQVAIHEAMEQQTISITKAGIQAT 492 (794)
Q Consensus 428 gLt~~v~~d-----~~~g~-~-~-~~~--Gal~la-d~GIl~IDE~dk~~----~~~~~~L~eame~~~isi~kaG~~~~ 492 (794)
.+...+... +..+. . . ... ..+... ...+++|||++.+. ......|+..++..
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------ 159 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------ 159 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------------
Confidence 111111000 00000 0 0 000 000001 13489999999875 44555666666432
Q ss_pred ecCceEEEEecCCCC--CCCCCCC--CccCcccccCccccHHHHHHHHHHH-h-cc-CCcCCHHHHHHHHHHHHHhccCC
Q 003809 493 LNARTSILAAANPAG--GRYDKSK--PLKKHEDALAPAFTTAQLKRYIAYA-K-TL-KPKLSLEARKLLVDSYVALRRGD 565 (794)
Q Consensus 493 l~ar~siiAaaNP~~--Gryd~~~--~l~~~~~~~~~~~~~~~lr~yi~~a-r-~~-~P~ls~ea~~~L~~~Y~~lR~~~ 565 (794)
-+.++.+|+++|... .+.+... .+. .....-++++.+.+..++... . .+ ...+++++.+.+..+...-
T Consensus 160 ~~~~~~~I~~~~~~~~~~~~~~~~~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 234 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVDLLDPRVKSSLS-EEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE---- 234 (386)
T ss_dssp CC--EEEEEEESCGGGGGGCTTHHHHTTT-TEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT----
T ss_pred CCCeEEEEEEECCCChHhhhCHHHhccCC-CeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh----
Confidence 123567778877543 1111110 000 001112456777777776542 2 22 3578888888877643210
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhh
Q 003809 566 TTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKT 614 (794)
Q Consensus 566 ~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~ 614 (794)
...+|.+..+++.+...|.......|+.+|+..|+.-+..
T Consensus 235 ---------~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 235 ---------HGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp ---------TCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 1357888889999888888888889999999999887653
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.43 E-value=1.4e-06 Score=105.04 Aligned_cols=199 Identities=14% Similarity=0.092 Sum_probs=104.5
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee-cCCccCcccccccc
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT-SGKSSSAAGLTASV 433 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~-~g~~ss~~gLt~~v 433 (794)
...|+|++...+.++-.|...... |+||+||||||||++++.+++.+...... ...+.....+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~------------~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKN------------NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSC------------EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCCccCchHHHHHHHHHHhCCCCC------------CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--
Confidence 446899999998888777664322 89999999999999999999985221100 000000000000
Q ss_pred ccCCCCcccccc----cCceeecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC-
Q 003809 434 AKEPETGEFCIE----AGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG- 508 (794)
Q Consensus 434 ~~d~~~g~~~~~----~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G- 508 (794)
.....|++.-. -+.+..+.++|+||| ...+.++.|..+|+.+ .+.+|+|+|+..-
T Consensus 245 -g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~~~ 304 (758)
T 3pxi_A 245 -GTKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDEYR 304 (758)
T ss_dssp ---------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTTTH
T ss_pred -cccccchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC---------------CEEEEeCCChHHHH
Confidence 00011211111 011112457899999 4445667777777644 4778999998761
Q ss_pred -CCCCCCCccCc-ccccCccccHHHHHHHHHHHhc-----cCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHH
Q 003809 509 -RYDKSKPLKKH-EDALAPAFTTAQLKRYIAYAKT-----LKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQL 581 (794)
Q Consensus 509 -ryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~ar~-----~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~L 581 (794)
.+.....+..+ ....-+..+.+.....+..... ....+++++...+..+-..... -+..++..
T Consensus 305 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~----------~~~~p~~a 374 (758)
T 3pxi_A 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS----------DRFLPDKA 374 (758)
T ss_dssp HHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC----------CSCTTHHH
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccc----------cCcCCcHH
Confidence 11222222211 1111123456665555543321 3456888888888765433211 12345677
Q ss_pred HHHHHHHHHHHHhcCC
Q 003809 582 EALIRLSEAIARSHLE 597 (794)
Q Consensus 582 esliRlseA~Arl~~~ 597 (794)
..+++-|.+.+++...
T Consensus 375 i~ll~~a~~~~~~~~~ 390 (758)
T 3pxi_A 375 IDLIDEAGSKVRLRSF 390 (758)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 7788888777777654
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.37 E-value=1.6e-08 Score=122.45 Aligned_cols=132 Identities=19% Similarity=0.191 Sum_probs=72.1
Q ss_pred CceechhhHHHHHHHHHhCCccc-ccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHK-LTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~-~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
.+|.|.+.+|+.+.-.+.-.... .......++-.-++||+||||||||+|+++++..+...++.. +...+....+
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v----~~~~l~~~~~ 552 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI----KGPELLTMWF 552 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC----CCSSSTTCCT
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE----echHhhhhhc
Confidence 35789999999887655432211 011112233334799999999999999999999876544421 1111211111
Q ss_pred cCCCCcccccccCceeec---CCCeEEecccccCCh--------------hhHHHHHHHhhccEEEEeecceEEeecCce
Q 003809 435 KEPETGEFCIEAGALMLA---DNGICCIDEFDKMDI--------------RDQVAIHEAMEQQTISITKAGIQATLNART 497 (794)
Q Consensus 435 ~d~~~g~~~~~~Gal~la---d~GIl~IDE~dk~~~--------------~~~~~L~eame~~~isi~kaG~~~~l~ar~ 497 (794)
... +..+. ..+-.+ ..+|+||||+|.+.. ..++.|+..|+... -..++
T Consensus 553 g~~---~~~i~-~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v 617 (806)
T 1ypw_A 553 GES---EANVR-EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNV 617 (806)
T ss_dssp TTS---SHHHH-HHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CC
T ss_pred Ccc---HHHHH-HHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----------ccCCe
Confidence 110 00000 001111 237999999997632 22355666664321 12368
Q ss_pred EEEEecCCC
Q 003809 498 SILAAANPA 506 (794)
Q Consensus 498 siiAaaNP~ 506 (794)
.||||||+.
T Consensus 618 ~vI~tTN~~ 626 (806)
T 1ypw_A 618 FIIGATNRP 626 (806)
T ss_dssp BCCCCCBSC
T ss_pred EEEEecCCc
Confidence 899999975
No 83
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.37 E-value=2e-07 Score=90.63 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=42.0
Q ss_pred HHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 348 NKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 348 ~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
..+...-+..++|++...+.+.-.+..+... +++|+|+||||||++++.+++.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTIQVLQRRTKN------------NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTSSSSC------------EEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhccccccccchHHHHHHHHHHhcCCCC------------ceEEECCCCCCHHHHHHHHHHHH
Confidence 3344455667899998888877776654322 89999999999999999999875
No 84
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.34 E-value=8.7e-08 Score=93.21 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=40.3
Q ss_pred hhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 350 IVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 350 l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+...-+..++|++...+.++-.+..+... |+||+|+||||||++++.+++.+
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~------------~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSRRTKN------------NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSC------------EEEEESCGGGCHHHHHHHHHHHH
T ss_pred HhccccchhhcchHHHHHHHHHHhCCCCC------------ceEEECCCCCCHHHHHHHHHHHH
Confidence 33444567889998888777776554321 89999999999999999999875
No 85
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.32 E-value=9.8e-07 Score=95.00 Aligned_cols=181 Identities=17% Similarity=0.184 Sum_probs=94.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC---cc-eeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP---RS-VYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p---~~-~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
+++|+||||||||+|++++++.+. .. ++.+... ....+....... ....+. . .....+++||||++.++
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~-~~~~~~-~----~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD-FAQAMVEHLKKG-TINEFR-N----MYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHHHHHHHHHHT-CHHHHH-H----HHHTCSEEEEECGGGGT
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH-HHHHHHHHHHcC-cHHHHH-H----HhcCCCEEEEcCccccc
Confidence 799999999999999999998762 22 2221100 000011110000 000000 0 01346899999999988
Q ss_pred h--hhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCCC--CCCCCCCccCc-----ccccCccccHHHHHHHHH
Q 003809 467 I--RDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGG--RYDKSKPLKKH-----EDALAPAFTTAQLKRYIA 537 (794)
Q Consensus 467 ~--~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~G--ryd~~~~l~~~-----~~~~~~~~~~~~lr~yi~ 537 (794)
. ..+..++..++... ..| ...|+++.|+... .+++ .+..+ .-.+.| +.+....++.
T Consensus 112 ~~~~~~~~l~~~l~~~~----~~~-------~~iii~~~~~~~~l~~l~~--~L~sR~~~~~~i~l~~--~~~e~~~il~ 176 (324)
T 1l8q_A 112 GKERTQIEFFHIFNTLY----LLE-------KQIILASDRHPQKLDGVSD--RLVSRFEGGILVEIEL--DNKTRFKIIK 176 (324)
T ss_dssp TCHHHHHHHHHHHHHHH----HTT-------CEEEEEESSCGGGCTTSCH--HHHHHHHTSEEEECCC--CHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH----HCC-------CeEEEEecCChHHHHHhhh--HhhhcccCceEEEeCC--CHHHHHHHHH
Confidence 6 56677777764321 001 1344555554321 1111 11100 011223 5666555554
Q ss_pred HH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHH--H--hcCCCCc-CHHHHHHHHH
Q 003809 538 YA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIA--R--SHLETQV-HPRHVRVAVR 610 (794)
Q Consensus 538 ~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~A--r--l~~~~~V-~~~dv~eAi~ 610 (794)
.. +.....+++++.+.|..+. -++|+|+.++..+.+.. . +.....| +.+++.+++.
T Consensus 177 ~~~~~~~~~l~~~~l~~l~~~~-----------------g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~ 238 (324)
T 1l8q_A 177 EKLKEFNLELRKEVIDYLLENT-----------------KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVA 238 (324)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHC-----------------SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHhC-----------------CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHH
Confidence 33 3345568888877776521 34688888887665541 0 1122346 7778777765
No 86
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=6e-06 Score=89.55 Aligned_cols=189 Identities=11% Similarity=0.098 Sum_probs=98.7
Q ss_pred CceechhhHHHHHHHHH-hCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHh-hCCcce---eecCCcc------
Q 003809 356 PTVFGHQDIKRAILLML-LGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAG-IVPRSV---YTSGKSS------ 424 (794)
Q Consensus 356 p~I~G~e~vK~alll~L-~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~-~~p~~~---~~~g~~s------ 424 (794)
.+++|++.++..+.-.+ -.|.. . |++|+||||+|||++++.+++ +.+... ...+...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~-----------~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDL-----------P-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCC-----------C-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred HHhcCCHHHHHHHHHHHhhCCCC-----------C-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 35779999888776655 33321 1 699999999999999999999 443221 0000000
Q ss_pred --------Cc--cccccccccCCCCc----cc---ccccCce--------eecCCCeEEecccccCChhhHHHHHHHhhc
Q 003809 425 --------SA--AGLTASVAKEPETG----EF---CIEAGAL--------MLADNGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 425 --------s~--~gLt~~v~~d~~~g----~~---~~~~Gal--------~lad~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
.. ..+.+..... ..+ +. ......+ ...+..+++|||++.+++..+++|+..|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGN-NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp ----CCEECSSEEEECCC-----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred cceeeeecccceEEecHhhcCC-cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 00 0000000000 000 00 0000000 123445999999999999999999999975
Q ss_pred cEEEEeecceEEeecCceEEEEecCCCCCCCCCCCCccCcc-cccCccccHHHHHHHHHHH-hccCCcCC-HHHHHHHHH
Q 003809 480 QTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKKHE-DALAPAFTTAQLKRYIAYA-KTLKPKLS-LEARKLLVD 556 (794)
Q Consensus 480 ~~isi~kaG~~~~l~ar~siiAaaNP~~Gryd~~~~l~~~~-~~~~~~~~~~~lr~yi~~a-r~~~P~ls-~ea~~~L~~ 556 (794)
- +.++.+|.++|.... . ..++..+- ...-++++.+.+..++... +.....++ +++.+.|..
T Consensus 161 ~-------------~~~~~~Il~t~~~~~-l--~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~ 224 (354)
T 1sxj_E 161 Y-------------SKNIRLIMVCDSMSP-I--IAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQ 224 (354)
T ss_dssp S-------------TTTEEEEEEESCSCS-S--CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHH
T ss_pred h-------------cCCCEEEEEeCCHHH-H--HHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 2 224556666664321 1 00111010 1112345667777776544 33444567 777777764
Q ss_pred HHHHhccCCCCCCCccccccCHHHHHHHHHHHH
Q 003809 557 SYVALRRGDTTPGSRVAYRMTVRQLEALIRLSE 589 (794)
Q Consensus 557 ~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlse 589 (794)
.. +-++|.+.+++.-+.
T Consensus 225 ~~----------------~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 225 AS----------------NGNLRVSLLMLESMA 241 (354)
T ss_dssp HH----------------TTCHHHHHHHHTHHH
T ss_pred Hc----------------CCCHHHHHHHHHHHH
Confidence 31 234677766665443
No 87
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.20 E-value=4e-06 Score=102.29 Aligned_cols=201 Identities=16% Similarity=0.148 Sum_probs=97.7
Q ss_pred hhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCc----------ceeecC
Q 003809 352 DSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPR----------SVYTSG 421 (794)
Q Consensus 352 ~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~----------~~~~~g 421 (794)
..-+..++|++...+.++-.|..+... |+||+||||||||++++.++..+.. .++...
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~------------~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKN------------NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCC------------CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCC------------ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 334445889988877777766554322 7999999999999999999987521 122110
Q ss_pred CccCccccccccccCCCCccccccc-Cceee---c-CCCeEEecccccCC--------hhhHHHHHHHhhccEEEEeecc
Q 003809 422 KSSSAAGLTASVAKEPETGEFCIEA-GALML---A-DNGICCIDEFDKMD--------IRDQVAIHEAMEQQTISITKAG 488 (794)
Q Consensus 422 ~~ss~~gLt~~v~~d~~~g~~~~~~-Gal~l---a-d~GIl~IDE~dk~~--------~~~~~~L~eame~~~isi~kaG 488 (794)
. ..+.+. ....|++.-.- ..+.. . ...|+||||++.+. ....+.|..+++.+
T Consensus 234 ~----~~l~~g---~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~-------- 298 (854)
T 1qvr_A 234 M----GSLLAG---AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG-------- 298 (854)
T ss_dssp C------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--------
T ss_pred h----HHhhcc---CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--------
Confidence 0 111100 00111111000 00100 1 23599999999886 33445566776554
Q ss_pred eEEeecCceEEEEecCCCCC-CCCCCCCccCc-ccccCccccHHHHHHHHHHH-----hccCCcCCHHHHHHHHHHHHHh
Q 003809 489 IQATLNARTSILAAANPAGG-RYDKSKPLKKH-EDALAPAFTTAQLKRYIAYA-----KTLKPKLSLEARKLLVDSYVAL 561 (794)
Q Consensus 489 ~~~~l~ar~siiAaaNP~~G-ryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~a-----r~~~P~ls~ea~~~L~~~Y~~l 561 (794)
.+.+|+|+|+... ++.....+..+ ....-+..+.+....++... ......+++++...+..+....
T Consensus 299 -------~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~ 371 (854)
T 1qvr_A 299 -------ELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 (854)
T ss_dssp -------CCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred -------CeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhh
Confidence 3457777775421 01111111100 00111223455444444322 1235678888888877654332
Q ss_pred ccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcC
Q 003809 562 RRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHL 596 (794)
Q Consensus 562 R~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~ 596 (794)
-. -+.-++....++.-+.+.+++..
T Consensus 372 i~----------~~~lp~kai~lldea~a~~~~~~ 396 (854)
T 1qvr_A 372 IT----------ERRLPDKAIDLIDEAAARLRMAL 396 (854)
T ss_dssp CC----------SSCTHHHHHHHHHHHHHHHHHTT
T ss_pred cc----------cccChHHHHHHHHHHHHHHHhhc
Confidence 11 12345777777777777666654
No 88
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.17 E-value=9.4e-06 Score=108.89 Aligned_cols=187 Identities=18% Similarity=0.248 Sum_probs=120.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
...+.||+|||||.+++.+++.+.+.+++-.. ..++..... |. +-.|+. ..|+.+|+|||++++++..
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC---~~~~d~~~~-----g~--i~~G~~--~~GaW~cfDEfNrl~~~vL 673 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCC---DEGFDLQAM-----SR--IFVGLC--QCGAWGCFDEFNRLEERIL 673 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEEC---SSCCCHHHH-----HH--HHHHHH--HHTCEEEEETTTSSCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeC---CCCCCHHHH-----HH--HHhhHh--hcCcEEEehhhhcCCHHHH
Confidence 35789999999999999999999998775322 123322211 11 123321 3577899999999999998
Q ss_pred HHHHHHhh---------ccEEEEeecceEEeecCceEEEEecCCCC-CCCCCCCCccCcccccC-ccccHHHHHHHHHHH
Q 003809 471 VAIHEAME---------QQTISITKAGIQATLNARTSILAAANPAG-GRYDKSKPLKKHEDALA-PAFTTAQLKRYIAYA 539 (794)
Q Consensus 471 ~~L~eame---------~~~isi~kaG~~~~l~ar~siiAaaNP~~-Gryd~~~~l~~~~~~~~-~~~~~~~lr~yi~~a 539 (794)
+.+.+.|. ..++.+. .|....++..+.+++|+||.+ ||..-...+...-..+. ..-+.+.+...+.|+
T Consensus 674 Svv~~qi~~I~~a~~~~~~~~~~~-~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s 752 (3245)
T 3vkg_A 674 SAVSQQIQTIQVALKENSKEVELL-GGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYS 752 (3245)
T ss_dssp HHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCeEEec-CCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHHH
Confidence 88777554 3344332 166788889999999999954 44322222221111111 223556666666665
Q ss_pred hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhc
Q 003809 540 KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSH 595 (794)
Q Consensus 540 r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~ 595 (794)
.-+.- ....+.+++..|.-.+..-. ...+|-+..|.+.++++.|-+.-|-.
T Consensus 753 ~Gf~~--a~~La~k~~~~~~l~~e~LS---~Q~HYDfGLRalKsVL~~AG~lkr~~ 803 (3245)
T 3vkg_A 753 QGFKT--AEVLAGKIVPLFKLCQEQLS---AQSHYDFGLRALKSVLVSAGGIKRKC 803 (3245)
T ss_dssp TTCSC--HHHHHHHHHHHHHHHHHSSC---CCTTCCCSHHHHHHHHHHHHHHHHSC
T ss_pred cccch--HHHHHHHHHHHHHHHHHHhC---CCCCCCCChHHHHHHHHHHHHHHHhh
Confidence 44322 35677788899988876543 34578889999999999987776654
No 89
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.15 E-value=5.6e-06 Score=89.37 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+++|+||||||||.+++.+++.+
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999876
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.00 E-value=1e-05 Score=98.06 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=71.3
Q ss_pred CceechhhHHHHHHHHHhCCc-ccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccc
Q 003809 356 PTVFGHQDIKRAILLMLLGGV-HKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVA 434 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~-~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~ 434 (794)
-+|.|++.+|+.|.-.+.-.. .........++..-++||+||||||||+|+++++..++...+.... ..+...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~----~~l~~~-- 277 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING----PEIMSK-- 277 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEH----HHHSSS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEc----hHhhhh--
Confidence 357887776665543332100 0001111122333379999999999999999999998765543110 011100
Q ss_pred cCCCCcccccccC-cee---ecCCCeEEecccccCChh-----------hHHHHHHHhhccEEEEeecceEEeecCceEE
Q 003809 435 KEPETGEFCIEAG-ALM---LADNGICCIDEFDKMDIR-----------DQVAIHEAMEQQTISITKAGIQATLNARTSI 499 (794)
Q Consensus 435 ~d~~~g~~~~~~G-al~---lad~GIl~IDE~dk~~~~-----------~~~~L~eame~~~isi~kaG~~~~l~ar~si 499 (794)
..++..-.-+ .+- ....+++||||++.+.+. .+..|+..|+... -..++.+
T Consensus 278 ---~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~v 343 (806)
T 1ypw_A 278 ---LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIV 343 (806)
T ss_dssp ---STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEE
T ss_pred ---hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEE
Confidence 0011000000 010 113479999999866432 3456777775322 1246889
Q ss_pred EEecCCCC
Q 003809 500 LAAANPAG 507 (794)
Q Consensus 500 iAaaNP~~ 507 (794)
++|+|+..
T Consensus 344 I~atn~~~ 351 (806)
T 1ypw_A 344 MAATNRPN 351 (806)
T ss_dssp EEECSCTT
T ss_pred ecccCCch
Confidence 99999863
No 91
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.96 E-value=5.5e-05 Score=81.98 Aligned_cols=163 Identities=11% Similarity=0.065 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHhCCcccccCCCccccccee-EEEeCCCcchHHHHHHHHHhhCCcceee----cCCc--------cCcc
Q 003809 361 HQDIKRAILLMLLGGVHKLTHEGINLRGDIN-VCIVGDPSCAKSQFLKYAAGIVPRSVYT----SGKS--------SSAA 427 (794)
Q Consensus 361 ~e~vK~alll~L~gg~~~~~~~g~~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~~p~~~~~----~g~~--------ss~~ 427 (794)
++.+.+.+.-++-.|... | +||+||||+|||++++.+++.+...... +|.- .+..
T Consensus 7 ~~~~~~~l~~~i~~~~~~------------~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGH------------HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTTCCC------------SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcCCcc------------eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 455666666666655421 4 8999999999999999999864321110 0000 0000
Q ss_pred ccccccccC---CCCccc----ccc-cCce-eecCCCeEEecccccCChhhHHHHHHHhhccEEEEeecceEEeecCceE
Q 003809 428 GLTASVAKE---PETGEF----CIE-AGAL-MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTS 498 (794)
Q Consensus 428 gLt~~v~~d---~~~g~~----~~~-~Gal-~lad~GIl~IDE~dk~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~s 498 (794)
++.. +... ...+.- .++ .... ..+...|++|||+|+|+...+++|+..||+- +.++.
T Consensus 75 d~~~-~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~ 140 (334)
T 1a5t_A 75 DYYT-LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETW 140 (334)
T ss_dssp TEEE-ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEE
T ss_pred CEEE-EeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeE
Confidence 1100 0000 000000 000 0000 1234569999999999999999999999852 23455
Q ss_pred EEEecCCCCCCCCCCCCccCc-ccccCccccHHHHHHHHHHHhccCCcCCHHHHHHHHH
Q 003809 499 ILAAANPAGGRYDKSKPLKKH-EDALAPAFTTAQLKRYIAYAKTLKPKLSLEARKLLVD 556 (794)
Q Consensus 499 iiAaaNP~~Gryd~~~~l~~~-~~~~~~~~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~ 556 (794)
+|.++|-.. +..+ ++..+ ....-++++.+.+..++.... .+++++...+..
T Consensus 141 ~Il~t~~~~-~l~~--ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~ 192 (334)
T 1a5t_A 141 FFLATREPE-RLLA--TLRSRCRLHYLAPPPEQYAVTWLSREV----TMSQDALLAALR 192 (334)
T ss_dssp EEEEESCGG-GSCH--HHHTTSEEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred EEEEeCChH-hCcH--HHhhcceeeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 555555321 1110 11101 011123567788888876442 567777666654
No 92
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.86 E-value=3.1e-05 Score=85.37 Aligned_cols=228 Identities=15% Similarity=0.174 Sum_probs=117.5
Q ss_pred CCceechhhHHHHHHHHH----hCCcccccCCCcccccceeEEE--eCCCcchHHHHHHHHHhhCCc----------cee
Q 003809 355 GPTVFGHQDIKRAILLML----LGGVHKLTHEGINLRGDINVCI--VGDPSCAKSQFLKYAAGIVPR----------SVY 418 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L----~gg~~~~~~~g~~~Rg~iniLL--vG~PGtGKS~Ll~~i~~~~p~----------~~~ 418 (794)
.+.++|.+.....+.-.| ..|.. ...-+++| +|+||+|||+|++.+++.+.. .++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~---------~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAG---------LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSC---------BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCC---------CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 356888887655554444 22200 00117888 999999999999999876532 122
Q ss_pred ecC-CccCccccccccccC-----CCCcc---ccccc-CceeecC--CCeEEecccccCCh------hhHHHHHHHhhcc
Q 003809 419 TSG-KSSSAAGLTASVAKE-----PETGE---FCIEA-GALMLAD--NGICCIDEFDKMDI------RDQVAIHEAMEQQ 480 (794)
Q Consensus 419 ~~g-~~ss~~gLt~~v~~d-----~~~g~---~~~~~-Gal~lad--~GIl~IDE~dk~~~------~~~~~L~eame~~ 480 (794)
... ...+...+...+... +..+. -.... .....+. .-+++|||++.+.. .....|...+++.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI 171 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc
Confidence 221 111111111111100 00010 00000 0000111 23899999998754 4444455555432
Q ss_pred EEEEeecceEEeecCceEEEEecCCCC--CCCC---C--CCCccCcccccCccccHHHHHHHHHHH-h-cc-CCcCCHHH
Q 003809 481 TISITKAGIQATLNARTSILAAANPAG--GRYD---K--SKPLKKHEDALAPAFTTAQLKRYIAYA-K-TL-KPKLSLEA 550 (794)
Q Consensus 481 ~isi~kaG~~~~l~ar~siiAaaNP~~--Gryd---~--~~~l~~~~~~~~~~~~~~~lr~yi~~a-r-~~-~P~ls~ea 550 (794)
.. .+ ...++.+|+++|... ...+ . ...+. ....-++++.+.+..++... . .. .+.+++++
T Consensus 172 ~~----~~----~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~--~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~ 241 (412)
T 1w5s_A 172 PS----RD----GVNRIGFLLVASDVRALSYMREKIPQVESQIG--FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRH 241 (412)
T ss_dssp CC----TT----SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS--EEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHH
T ss_pred cc----CC----CCceEEEEEEeccccHHHHHhhhcchhhhhcC--CeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHH
Confidence 10 00 014677777776221 0000 0 00011 00123457777777777543 2 12 24578887
Q ss_pred HHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 551 RKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 551 ~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
...+....... ....-.+|.+..+++.+...|.......|+.+|+..|+.-
T Consensus 242 ~~~i~~~~~~~----------~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 242 LELISDVYGED----------KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp HHHHHHHHCGG----------GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh----------ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 77765532210 0011457889999998888888888889999999988754
No 93
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=4e-05 Score=82.24 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=58.7
Q ss_pred chhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhC-------CcceeecCCccCccccccc
Q 003809 360 GHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIV-------PRSVYTSGKSSSAAGLTAS 432 (794)
Q Consensus 360 G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~-------p~~~~~~g~~ss~~gLt~~ 432 (794)
||+++.+.|.-++-.|.. -+.||+||||+|||++++++++.. |......... ...+. .
T Consensus 1 g~~~~~~~L~~~i~~~~~------------~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-~~~~i--d 65 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEG------------ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-ENIGI--D 65 (305)
T ss_dssp ---CHHHHHHHHHHTCSS------------EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-SCBCH--H
T ss_pred ChHHHHHHHHHHHHCCCC------------cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-CCCCH--H
Confidence 667777777666665541 189999999999999999998741 1111111100 00000 0
Q ss_pred cccCCCCcccccccCceeecCCCeEEecccccCChhhHHHHHHHhhcc
Q 003809 433 VAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQ 480 (794)
Q Consensus 433 v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~~~L~eame~~ 480 (794)
.+++- .......| ..+..-|++|||++.|+...+++|+..||+-
T Consensus 66 ~ir~l-i~~~~~~p---~~~~~kvviIdead~lt~~a~naLLk~LEep 109 (305)
T 2gno_A 66 DIRTI-KDFLNYSP---ELYTRKYVIVHDCERMTQQAANAFLKALEEP 109 (305)
T ss_dssp HHHHH-HHHHTSCC---SSSSSEEEEETTGGGBCHHHHHHTHHHHHSC
T ss_pred HHHHH-HHHHhhcc---ccCCceEEEeccHHHhCHHHHHHHHHHHhCC
Confidence 00100 00000001 1234569999999999999999999999863
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.73 E-value=8.7e-06 Score=79.76 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=56.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc-----ceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccc--
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR-----SVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFD-- 463 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~-----~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~d-- 463 (794)
+++|+||||||||+|+++++..+.. ..+.+ ...+...+......+. ...-.-.+.+..+++|||++
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-----TKDLIFRLKHLMDEGK--DTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-----HHHHHHHHHHHHHHTC--CSHHHHHHHTCSEEEEETCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-----HHHHHHHHHHHhcCch--HHHHHHHhcCCCEEEEeCCCCC
Confidence 7999999999999999999987631 11111 1111110000000000 00000112356799999998
Q ss_pred cCChhhHHHHHHHhhccEEEEeecceEEeecCceEEEEecCCCC
Q 003809 464 KMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAG 507 (794)
Q Consensus 464 k~~~~~~~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~~ 507 (794)
.+++..+..|++.++... ....++|.++|..+
T Consensus 113 ~~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 113 RLSDWQRELISYIITYRY------------NNLKSTIITTNYSL 144 (180)
T ss_dssp CCCHHHHHHHHHHHHHHH------------HTTCEEEEECCCCS
T ss_pred cCCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCCh
Confidence 577777888888875431 12466778888654
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.61 E-value=7e-05 Score=75.55 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=52.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhh-
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRD- 469 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~- 469 (794)
++||+||||||||+++.++++.+...+..... . ...+.+. .+.+.-|++|||++...-..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~fan-------------s--~s~f~l~----~l~~~kIiiLDEad~~~~~~~ 120 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVISFVN-------------S--TSHFWLE----PLTDTKVAMLDDATTTCWTYF 120 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEECCCCC-------------S--SSCGGGG----GGTTCSSEEEEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeEEe-------------c--cchhhhc----ccCCCCEEEEECCCchhHHHH
Confidence 69999999999999999999976432211000 0 0011111 12234589999998432111
Q ss_pred HHHHHHHhhccEEEEeecce-EEeecCceEEEEecCCC
Q 003809 470 QVAIHEAMEQQTISITKAGI-QATLNARTSILAAANPA 506 (794)
Q Consensus 470 ~~~L~eame~~~isi~kaG~-~~~l~ar~siiAaaNP~ 506 (794)
...+..+|+...+++.+.-. ....+ ...+|.|+|-.
T Consensus 121 d~~lrn~ldG~~~~iD~Khr~~~~~~-~~PlIITtN~~ 157 (212)
T 1tue_A 121 DTYMRNALDGNPISIDRKHKPLIQLK-CPPILLTTNIH 157 (212)
T ss_dssp HHHCHHHHHTCCEEEC----CCEEEC-CCCEEEEESSC
T ss_pred HHHHHHHhCCCcccHHHhhcCccccC-CCCEEEecCCC
Confidence 23456666666665531111 11222 34667778854
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.50 E-value=9.1e-05 Score=70.90 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=47.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc----ceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR----SVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMD 466 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~----~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~ 466 (794)
.++|+|++|+|||+|+++++..++. .+|..+. .+.. . + .+.+..+++|||++.++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~-----~~~~--------~-------~-~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA-----SMPL--------T-------D-AAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT-----TSCC--------C-------G-GGGGCSEEEEESTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH-----HhhH--------H-------H-HHhCCCEEEEeCccccC
Confidence 6899999999999999999997642 1121111 0000 0 1 12345799999999999
Q ss_pred hhhHHHHHHHhhc
Q 003809 467 IRDQVAIHEAMEQ 479 (794)
Q Consensus 467 ~~~~~~L~eame~ 479 (794)
...+..|++.++.
T Consensus 97 ~~~~~~l~~li~~ 109 (149)
T 2kjq_A 97 NEEQALLFSIFNR 109 (149)
T ss_dssp SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8888888888763
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.24 E-value=0.00083 Score=70.45 Aligned_cols=95 Identities=11% Similarity=0.121 Sum_probs=53.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEecccccCChhhH
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQ 470 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk~~~~~~ 470 (794)
++||+||||||||.++.++++.++..--++. + ...+.+.+ +.+.-|++.||....+ +..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l~G~vn~---~-------------~~~f~l~~----~~~k~i~l~Ee~~~~~-d~~ 164 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPFYGCVNW---T-------------NENFPFND----CVDKMVIWWEEGKMTA-KVV 164 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEECCT---T-------------CSSCTTGG----GSSCSEEEECSCCEET-TTH
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcccceeec---c-------------cccccccc----ccccEEEEeccccchh-HHH
Confidence 6999999999999999999997654211111 0 01111111 1233456666666544 455
Q ss_pred HHHHHHhhccEEEEeecceEEeecCceEEEEecCCC
Q 003809 471 VAIHEAMEQQTISITKAGIQATLNARTSILAAANPA 506 (794)
Q Consensus 471 ~~L~eame~~~isi~kaG~~~~l~ar~siiAaaNP~ 506 (794)
..+..+|+-..+.+.........-.++.+|-++|-.
T Consensus 165 ~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~ 200 (267)
T 1u0j_A 165 ESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTN 200 (267)
T ss_dssp HHHHHHHTTCCEEC------CCEECCCCEEEEESSC
T ss_pred HHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCC
Confidence 678888876666664221111112356677788853
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.22 E-value=6.8e-05 Score=74.58 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+++|+|+||||||+|+++++..+.
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998753
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.19 E-value=6.9e-05 Score=80.49 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+++|+||||||||+|+++++..+.
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998765
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.06 E-value=0.0013 Score=64.66 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
++.|+||+|+|||+|++.++...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.96 E-value=0.0066 Score=59.90 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=21.3
Q ss_pred CCeEEecccccCChhhHHHHHHHhhcc
Q 003809 454 NGICCIDEFDKMDIRDQVAIHEAMEQQ 480 (794)
Q Consensus 454 ~GIl~IDE~dk~~~~~~~~L~eame~~ 480 (794)
..+++|||+..++++....|...++.+
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~ 103 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRG 103 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTT
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCC
Confidence 358999999999887777777777654
No 102
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.73 E-value=0.0097 Score=67.10 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=48.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc----ceeec-CCccCc------cccccc----ccc-----CCCCcccccccCcee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR----SVYTS-GKSSSA------AGLTAS----VAK-----EPETGEFCIEAGALM 450 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~----~~~~~-g~~ss~------~gLt~~----v~~-----d~~~g~~~~~~Gal~ 450 (794)
++++.|+||||||+++..+...+.. .+... -.+..+ .+..+. ..+ ......|.. ...-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~-~~~~~ 125 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQ-KEVPD 125 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEE-CSCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcc-ccccc
Confidence 7999999999999999888876421 12211 110000 011110 000 000011100 11112
Q ss_pred ecCCCeEEecccccCChhhHHHHHHHhh
Q 003809 451 LADNGICCIDEFDKMDIRDQVAIHEAME 478 (794)
Q Consensus 451 lad~GIl~IDE~dk~~~~~~~~L~eame 478 (794)
+....+++|||+..++...+..|...+.
T Consensus 126 ~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 126 LAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp CSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred ccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 2346799999999999988888888774
No 103
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.08 E-value=0.044 Score=64.15 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 361 HQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 361 ~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.-+.|+...+-++ .+++.|+||||||+++.++...
T Consensus 151 ~~~Q~~Ai~~~l~~~---------------~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 151 INWQKVAAAVALTRR---------------ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp CCHHHHHHHHHHTBS---------------EEEEECCTTSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC---------------CEEEEeCCCCCHHHHHHHHHHH
Confidence 344566776666332 6899999999999988776654
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.92 E-value=0.023 Score=56.95 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=17.1
Q ss_pred eEEEeCCCcchHHHHHHHHH
Q 003809 391 NVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~ 410 (794)
..|+.|+||+|||+++....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999987753
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.77 E-value=0.11 Score=55.75 Aligned_cols=175 Identities=11% Similarity=0.070 Sum_probs=94.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc------ceeecCCccCccccccccccCCCCcccccccCceeecCCCeEEeccccc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR------SVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDK 464 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~------~~~~~g~~ss~~gLt~~v~~d~~~g~~~~~~Gal~lad~GIl~IDE~dk 464 (794)
..||+||+|+||++.++.+++.+.. .++.... ...+ ..+. +. ....++ .++.-|++|||.+.
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~-~~l~------~~-~~~~pl-f~~~kvvii~~~~~ 87 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDW-NAIF------SL-CQAMSL-FASRQTLLLLLPEN 87 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCH-HHHH------HH-HHHHHH-CCSCEEEEEECCSS
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCH-HHHH------HH-hcCcCC-ccCCeEEEEECCCC
Confidence 5899999999999999888775321 1111000 0000 0000 00 001111 23456999999998
Q ss_pred -CChhhHHHHHHHhhccEEEEeecceEEeecCc-eEEEEecCCCCCCCCCCCCcc----Cccccc-CccccHHHHHHHHH
Q 003809 465 -MDIRDQVAIHEAMEQQTISITKAGIQATLNAR-TSILAAANPAGGRYDKSKPLK----KHEDAL-APAFTTAQLKRYIA 537 (794)
Q Consensus 465 -~~~~~~~~L~eame~~~isi~kaG~~~~l~ar-~siiAaaNP~~Gryd~~~~l~----~~~~~~-~~~~~~~~lr~yi~ 537 (794)
++.+.+++|+..+|+- |.. +.|++++++.. -+....+. .+-..+ -.+++...+.+++.
T Consensus 88 kl~~~~~~aLl~~le~p-------------~~~~~~il~~~~~~~--~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 88 GPNAAINEQLLTLTGLL-------------HDDLLLIVRGNKLSK--AQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCCTTHHHHHHHHHTTC-------------BTTEEEEEEESCCCT--TTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CCChHHHHHHHHHHhcC-------------CCCeEEEEEcCCCCh--hhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 9999999999999751 223 33344444322 01111111 000000 12345566676665
Q ss_pred HH-hccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Q 003809 538 YA-KTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRL 611 (794)
Q Consensus 538 ~a-r~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L 611 (794)
.. +...-.+++++.+.|.+. .+-+.|.+.+.+.-. +-......|+.+||.+.+..
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~----------------~~gdl~~~~~elekl---~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYC----------------YEGNLLALAQALERL---SLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHS----------------STTCHHHHHHHHHHH---HHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHH----------------hchHHHHHHHHHHHH---HHhcCCCCCCHHHHHHHHhh
Confidence 43 445667899998888752 122456655544322 22223558999999887654
No 106
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.46 E-value=0.022 Score=54.49 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|.|+|+||+|||++++.++..++..++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6899999999999999999998765443
No 107
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.37 E-value=0.024 Score=54.48 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=24.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 5899999999999999999998875443
No 108
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.33 E-value=0.028 Score=65.28 Aligned_cols=84 Identities=25% Similarity=0.222 Sum_probs=45.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC---cceeec-CCccCcccc------ccc----ccc-CCCCcccccccCceeecCCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP---RSVYTS-GKSSSAAGL------TAS----VAK-EPETGEFCIEAGALMLADNG 455 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p---~~~~~~-g~~ss~~gL------t~~----v~~-d~~~g~~~~~~Gal~lad~G 455 (794)
.+++.|+||||||+++..+...+. ..+... -.+..+.-+ .+. ... .+ + .|... .-...+..
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~-~-~~~~~--~~~~~~~d 281 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGP-Q-GFRHN--HLEPAPYD 281 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEET-T-EESCS--SSSCCSCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCc-c-hhhhh--hcccccCC
Confidence 689999999999999998887532 112211 110000000 010 000 00 0 01000 00111346
Q ss_pred eEEecccccCChhhHHHHHHHhh
Q 003809 456 ICCIDEFDKMDIRDQVAIHEAME 478 (794)
Q Consensus 456 Il~IDE~dk~~~~~~~~L~eame 478 (794)
+++|||+..++......|+.++.
T Consensus 282 vlIIDEasml~~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 282 LLIVDEVSMMGDALMLSLLAAVP 304 (574)
T ss_dssp EEEECCGGGCCHHHHHHHHTTSC
T ss_pred EEEEcCccCCCHHHHHHHHHhCc
Confidence 99999999999988777777663
No 109
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.02 E-value=0.027 Score=54.59 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=25.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|+||+|||++++.+++.+...++.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~i~ 35 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRILYD 35 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999999987655553
No 110
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.89 E-value=0.024 Score=54.64 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=24.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|+||+|||++++.+++.++...+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68999999999999999999987655543
No 111
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.85 E-value=0.03 Score=55.80 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=24.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|+|+|+||+|||++++.+++.++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 68999999999999999998877655443
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.76 E-value=0.036 Score=52.61 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=23.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 5899999999999999999987664444
No 113
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.73 E-value=0.033 Score=53.18 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=25.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
||+|.|.||+|||++++.+++.+...++.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999999977665554
No 114
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.70 E-value=0.037 Score=54.67 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=24.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.+...++
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 7999999999999999999988765444
No 115
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.37 E-value=0.039 Score=52.18 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=23.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|+|+||+|||++++.+ +..+..++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 5899999999999999999 666555543
No 116
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.34 E-value=0.034 Score=53.74 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=25.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.+|+|+|+||+|||++++.+++.++..++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 379999999999999999999877655543
No 117
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.28 E-value=0.036 Score=55.15 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=23.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
+|+|.|+||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 5899999999999999999886654444
No 118
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.16 E-value=0.09 Score=54.13 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=23.3
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
..++|+|+||+|||++++.++..++.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 37999999999999999999998763
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.12 E-value=0.043 Score=52.52 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=20.0
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
.|+|+|+||+|||++++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999998
No 120
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.00 E-value=0.064 Score=52.65 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+||+|+|||+|++.++...|
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 378999999999999999999886
No 121
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.98 E-value=0.082 Score=57.67 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.++++||+|+|||++++++....+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 6999999999999999999887653
No 122
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.90 E-value=0.043 Score=53.11 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=23.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++..++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 6999999999999999999986654444
No 123
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.88 E-value=0.059 Score=52.55 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=24.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhh-CCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI-VPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~-~p~~~~~ 419 (794)
+|+|+|+||+|||++++.+++. +...++.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 7999999999999999999998 4544443
No 124
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.87 E-value=0.051 Score=52.60 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|+|+||+|||++++.+++.++..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999999976655543
No 125
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.87 E-value=0.045 Score=55.02 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=24.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|+||||+||++.++.+++.+.-....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 58999999999999999999976554443
No 126
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.84 E-value=0.13 Score=54.32 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.++|+|+||+|||++++.+++.++
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998765
No 127
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.79 E-value=0.067 Score=51.53 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=24.5
Q ss_pred cccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 384 INLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 384 ~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+..+..++|+++|++|+|||+|++.+...
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34456789999999999999999998764
No 128
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.62 E-value=0.054 Score=54.22 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=24.4
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
..|+|+|+||+|||++++.+++.+...++
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 37999999999999999999987654443
No 129
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.59 E-value=0.061 Score=53.03 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=23.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++..++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999987654443
No 130
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.57 E-value=0.059 Score=51.34 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|+|+||+|||++++.+++.++..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999976655543
No 131
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.55 E-value=0.2 Score=50.94 Aligned_cols=28 Identities=21% Similarity=-0.021 Sum_probs=19.1
Q ss_pred cccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 384 INLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 384 ~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.+|.+ ++++|+||+|||+++..++..
T Consensus 8 ~~~~G~i-~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 8 SKKIGWI-EFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp ---CCEE-EEEECSTTSCHHHHHHHHHHH
T ss_pred ccCCcEE-EEEECCCCCcHHHHHHHHHHH
Confidence 3445654 688999999999977655544
No 132
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.53 E-value=0.059 Score=51.86 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=20.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|.||+|||++++.+++.++..++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 6899999999999999999988766554
No 133
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.49 E-value=0.065 Score=52.13 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
-++|+|+||+|||++++.++......++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~~~ 31 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY 31 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCeEE
Confidence 4789999999999999999875443333
No 134
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.48 E-value=0.055 Score=54.14 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=25.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSG 421 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g 421 (794)
.|.|+|+||+|||++++.+++.++.....+|
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g 37 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSG 37 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 6899999999999999999987665444433
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.48 E-value=0.069 Score=52.60 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|+|+||+|||++++.+++.++..++.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 69999999999999999999876654443
No 136
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.47 E-value=0.059 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=21.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.++|+|+||+|||++++.++...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999999863
No 137
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.45 E-value=0.097 Score=55.45 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=35.4
Q ss_pred ceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 357 TVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 357 ~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.++|.+.....|.-.+-.|. .++++|++|+|||+|++.+++..+ .+|.
T Consensus 13 ~~~gR~~el~~L~~~l~~~~--------------~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~ 60 (350)
T 2qen_A 13 DIFDREEESRKLEESLENYP--------------LTLLLGIRRVGKSSLLRAFLNERP-GILI 60 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHCS--------------EEEEECCTTSSHHHHHHHHHHHSS-EEEE
T ss_pred hcCChHHHHHHHHHHHhcCC--------------eEEEECCCcCCHHHHHHHHHHHcC-cEEE
Confidence 46787776666655554332 799999999999999999988764 3443
No 138
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.42 E-value=0.066 Score=51.35 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.++|+|+||+|||++++.++..+..
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 5899999999999999999987643
No 139
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.42 E-value=0.055 Score=52.37 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=23.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++..++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 6899999999999999999987654443
No 140
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.40 E-value=0.068 Score=50.74 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=24.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|.|.||+|||++++.+++.++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999976655443
No 141
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.37 E-value=0.068 Score=51.94 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||+|+|||+|++.+....+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCc
Confidence 4899999999999999999998763
No 142
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.32 E-value=0.077 Score=50.95 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+||.|+|||+|++.++...|
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999999874
No 143
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.31 E-value=0.06 Score=52.23 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=23.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++..++
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i 34 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPLL 34 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEe
Confidence 6899999999999999999987654333
No 144
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.30 E-value=0.062 Score=57.82 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=50.9
Q ss_pred ccCCCHHHHHHHHHHHcC------CchHHHhhhhcCCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCc
Q 003809 326 QHQFTTEEIDEIQRMRNA------PDFFNKIVDSIGPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPS 399 (794)
Q Consensus 326 ~~~~t~~e~~~i~~~~~~------~~i~~~l~~si~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PG 399 (794)
...+|++|++.|+.+... .++|--|++.+.-. +|....-+.+...+.++... +...-+.|.|++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~-~~~~~~l~~~~~~~l~~~~~--------~~p~iigI~GpsG 102 (321)
T 3tqc_A 32 PLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFY-VTARQTLQQATYQFLGKPEP--------KVPYIIGIAGSVA 102 (321)
T ss_dssp -CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHH-HHHHHHHHHHHHHHHTCCCC--------CCCEEEEEECCTT
T ss_pred CCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHhccCCC--------CCCEEEEEECCCC
Confidence 356888888887766433 35565555544332 44444444555555554311 1223589999999
Q ss_pred chHHHHHHHHHhhCC
Q 003809 400 CAKSQFLKYAAGIVP 414 (794)
Q Consensus 400 tGKS~Ll~~i~~~~p 414 (794)
+|||++++.+..++.
T Consensus 103 SGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 103 VGKSTTSRVLKALLS 117 (321)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998865
No 145
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.29 E-value=0.066 Score=52.84 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|+||+|||++++.++..++.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5899999999999999999987643
No 146
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.17 E-value=0.08 Score=54.67 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=24.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.++|+|+||+|||+|++.+++.++..++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~ 31 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVA 31 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEe
Confidence 47999999999999999999877654443
No 147
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.07 E-value=0.056 Score=53.91 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=23.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
+|+|+|+||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i 29 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 6899999999999999999987654444
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.06 E-value=0.055 Score=52.64 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=24.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++..++
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 6999999999999999999987765544
No 149
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.93 E-value=0.095 Score=49.17 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.4
Q ss_pred cccceeEEEeCCCcchHHHHHHHHHh
Q 003809 386 LRGDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 386 ~Rg~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.+..++|+++|++|+|||+|+..+..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34457999999999999999999865
No 150
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.91 E-value=0.082 Score=51.59 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.|.|+|+||+|||++++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999997664
No 151
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.88 E-value=0.07 Score=54.05 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.+|+|+|+||+|||++++.+++.+...++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 45 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHL 45 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 37999999999999999999987654443
No 152
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.86 E-value=0.073 Score=53.60 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++...+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 6999999999999999999987765444
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.85 E-value=0.091 Score=51.52 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.+.|+|++|+|||++++.++...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999999987
No 154
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.85 E-value=0.083 Score=52.32 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.++|+|+||+|||++++.++..++.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCcc
Confidence 5899999999999999999998763
No 155
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.77 E-value=0.077 Score=54.36 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=24.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|.|+||+|||++++.+++.++...+.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 79999999999999999999876655443
No 156
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.74 E-value=0.08 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.|+|+|+||+|||++++.+++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998654
No 157
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.74 E-value=0.062 Score=52.39 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=24.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++..++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 6899999999999999999997765444
No 158
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.74 E-value=0.069 Score=54.56 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.++|+|+||+|||++++.+++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999544
No 159
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.70 E-value=0.085 Score=54.62 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=25.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
+|.|+|++|+|||++++.++..+...++.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 69999999999999999999977665554
No 160
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.56 E-value=0.092 Score=51.62 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=24.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|+|+||+|||++++.+++.++..++.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 68999999999999999999877654443
No 161
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.56 E-value=0.073 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.|+|+|+||+|||++++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 162
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.50 E-value=0.079 Score=51.15 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=24.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|+|+||+|||++++.+++.++..++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 6899999999999999999987665444
No 163
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.47 E-value=0.076 Score=53.86 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=23.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
-|+|+||||+||++.++.+++.+.-...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 4788999999999999999987654443
No 164
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.45 E-value=0.072 Score=53.34 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=24.5
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
..|+|+|+||+|||++++.+++.+...++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 37999999999999999999987654444
No 165
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.43 E-value=0.099 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
-++|+++|+||+|||+|++.+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998864
No 166
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.42 E-value=0.096 Score=52.18 Aligned_cols=25 Identities=8% Similarity=0.003 Sum_probs=22.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||+|+|||++++.++...+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4789999999999999999998875
No 167
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.36 E-value=0.099 Score=52.67 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=23.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|+|.|+||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 5899999999999999999987654433
No 168
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.28 E-value=0.087 Score=59.03 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=45.3
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCcceeecCCccCccccccccccC---CCCc-------ccccccCceeecCCCeEEecc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTASVAKE---PETG-------EFCIEAGALMLADNGICCIDE 461 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~~ss~~gLt~~v~~d---~~~g-------~~~~~~Gal~lad~GIl~IDE 461 (794)
.++.|+||+|||+++..++..-+..+. +........+...+.+. .... .|.+.++........+++|||
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~~~~lVl-TpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE 242 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNFEEDLIL-VPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDE 242 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCTTTCEEE-ESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEET
T ss_pred EEEEcCCCCCHHHHHHHHhccCCeEEE-eCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEeC
Confidence 689999999999999887764222222 22212222221111100 0000 011112111111256999999
Q ss_pred cccCChhhHHHHHHHh
Q 003809 462 FDKMDIRDQVAIHEAM 477 (794)
Q Consensus 462 ~dk~~~~~~~~L~eam 477 (794)
..+++.....+++.++
T Consensus 243 ~sm~~~~~l~~l~~~~ 258 (446)
T 3vkw_A 243 GLMLHTGCVNFLVEMS 258 (446)
T ss_dssp GGGSCHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHhC
Confidence 9999988877776655
No 169
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.20 E-value=0.089 Score=51.67 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.|+|.|+||+|||++++.+++.++.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 6899999999999999999986543
No 170
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.17 E-value=0.13 Score=56.05 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.++|+|++|+|||+|++.+..+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7999999999999999999998764
No 171
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.03 E-value=0.071 Score=53.44 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=23.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRS 416 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~ 416 (794)
.|+|+|+||+|||++++.+++.++..
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 69999999999999999999877643
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.98 E-value=0.091 Score=51.82 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||++++.++..++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998763
No 173
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.80 E-value=0.13 Score=47.75 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.9
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|+||+|||+|+..+..-
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999888753
No 174
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.77 E-value=0.22 Score=54.54 Aligned_cols=25 Identities=12% Similarity=0.188 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.++++||+|+|||++++.++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCc
Confidence 6899999999999999999988653
No 175
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.73 E-value=0.14 Score=49.10 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.7
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
..++|+++|+||+|||+|++++....+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 3468999999999999999998876543
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.71 E-value=0.11 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=22.1
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+.|+||+|+|||+|++.++...+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGG
T ss_pred EEEECCCCCCHHHHHHHHHhhCCc
Confidence 689999999999999999998864
No 177
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.59 E-value=0.14 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999998764
No 178
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.56 E-value=0.59 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+++++||+|+|||.++-.++....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC
Confidence 589999999999999887776653
No 179
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.53 E-value=0.19 Score=49.66 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
.|+|+||+|+|||+|++.+.+..|..+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 489999999999999999988877543
No 180
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.47 E-value=0.14 Score=50.30 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=22.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
.|.|+|++|+|||++++.++. +...++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i 29 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVL 29 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEE
Confidence 589999999999999999999 544333
No 181
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.42 E-value=0.34 Score=48.94 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.6
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
..++|+|+|++|+|||+|++.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 35689999999999999999988753
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.41 E-value=0.14 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+||+|+|||+|++.++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378999999999999999999987
No 183
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.41 E-value=0.15 Score=50.65 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-+.|+||+|+|||+|++.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998753
No 184
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.37 E-value=0.18 Score=49.74 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
.+.|+|+||+|||++++.++. +...+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~ 29 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPL 29 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcc
Confidence 589999999999999999998 44333
No 185
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.36 E-value=0.15 Score=47.60 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|+||+|||+|++.+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999988763
No 186
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.36 E-value=0.15 Score=47.62 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999888754
No 187
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.33 E-value=0.15 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 368999999999999999998764
No 188
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.32 E-value=0.15 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.8
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+++|++|+|||+|++.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4579999999999999999888764
No 189
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.29 E-value=0.12 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+||+|+|||+|++.+..+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 589999999999999999999876
No 190
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.28 E-value=0.15 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 58999999999999999988754
No 191
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.26 E-value=0.14 Score=52.67 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=26.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSGK 422 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g~ 422 (794)
.|.|+|++|+|||++++.+++.+....+.+|.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~ 60 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGA 60 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCc
Confidence 68999999999999999999877665555444
No 192
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.24 E-value=0.13 Score=52.81 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=25.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
+.+.|.|+||+|||++++.+++.+....+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4799999999999999999998776554443
No 193
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.14 E-value=0.16 Score=47.55 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999988754
No 194
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.09 E-value=0.16 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.009 Sum_probs=21.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999988763
No 195
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.08 E-value=0.16 Score=47.29 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998763
No 196
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.04 E-value=0.14 Score=50.12 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCCcccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 381 HEGINLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 381 ~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..|+..+..++|+++|++|+|||+|++.+...
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34556667789999999999999999998864
No 197
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.03 E-value=0.23 Score=56.71 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=23.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+++++|++|+|||++++++..+.+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 6999999999999999999998764
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.00 E-value=0.21 Score=49.83 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||+|+|||+|++.+....|.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCc
Confidence 4789999999999999999998774
No 199
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.95 E-value=0.17 Score=47.81 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|+||+|||+|++.+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998754
No 200
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.85 E-value=0.12 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+.++.|+|++|+|||+|++.++...+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987543
No 201
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.81 E-value=0.17 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|++|+|||+|++.+..-
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999988653
No 202
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.79 E-value=0.17 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+||+|+|||+|++.++.+.|
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999886
No 203
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.77 E-value=0.18 Score=47.05 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+..-
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999988753
No 204
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.76 E-value=0.18 Score=50.51 Aligned_cols=22 Identities=18% Similarity=0.022 Sum_probs=20.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-+.|+||.|+|||+|++.++.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999988
No 205
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.75 E-value=0.18 Score=47.61 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|+||+|||+|++.+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 468999999999999999988754
No 206
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.75 E-value=0.17 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+.++|+|++|+|||+|++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999998764
No 207
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.71 E-value=0.15 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.|+|+|+||+|||+|++.+...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998874
No 208
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.69 E-value=0.15 Score=47.10 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998764
No 209
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.68 E-value=0.18 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.5
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999998763
No 210
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.67 E-value=0.18 Score=49.01 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=21.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-|.|.|+||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999876
No 211
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.67 E-value=0.16 Score=54.61 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=19.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+||||+|||+|+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 3689999999999999998874
No 212
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.66 E-value=0.14 Score=50.73 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+|++|+|||+|++.++.+++
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999875
No 213
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.63 E-value=0.18 Score=48.70 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=23.4
Q ss_pred cccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 384 INLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 384 ~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
...+..++|+++|++|+|||+|++.+...
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 34455689999999999999999998753
No 214
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.63 E-value=0.16 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999988754
No 215
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.55 E-value=0.18 Score=49.21 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=21.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.|.|+|+||+|||++++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999976
No 216
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.53 E-value=0.16 Score=48.97 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=21.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.|.|.|+||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999865
No 217
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.49 E-value=0.14 Score=49.26 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.4
Q ss_pred eEEEeCCCcchHHHHHHHHH
Q 003809 391 NVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~ 410 (794)
-+.|+|++|+|||+|++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999843
No 218
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.47 E-value=0.21 Score=53.33 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=21.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.+.|+||+|+|||+|++.++.+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 58999999999999999999987
No 219
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.40 E-value=0.17 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.|+|+|.||+|||++++.+++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999986
No 220
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.35 E-value=0.2 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.6
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999998764
No 221
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.27 E-value=0.19 Score=50.77 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=22.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||+|+|||+|++.+....|.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 4789999999999999999998874
No 222
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.25 E-value=0.16 Score=49.70 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=25.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
.|.|.|++|+|||++++.+++.++..++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 589999999999999999999877655543
No 223
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.22 E-value=0.47 Score=48.56 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.4
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
...++|+|+|.||+|||+|+..+...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 35679999999999999999998764
No 224
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.16 E-value=0.17 Score=47.71 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.5
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+++|+||+|||+|++.+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999988653
No 225
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.16 E-value=0.16 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.9
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
++|+++|+||+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4799999999999999998864
No 226
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.09 E-value=0.22 Score=46.12 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|+++|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999998764
No 227
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.03 E-value=0.2 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
..|+|+|.||+|||++++.++..++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 228
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.03 E-value=0.22 Score=50.81 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.7
Q ss_pred cccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 386 LRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 386 ~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-||.++|++.|+||+|||+++-.++..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHH
Confidence 378899999999999999996665544
No 229
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.01 E-value=0.2 Score=47.54 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.1
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|+||+|||+|++.+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999988763
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.98 E-value=0.18 Score=50.73 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.7
Q ss_pred cceeEEEeCCCcchHHHHHHHHHh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
|. -++|+||+|+|||+|++.++.
T Consensus 30 G~-~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GT-TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TC-EEEEECCTTSSHHHHHHHHHH
T ss_pred Cc-EEEEEeCCCCCHHHHHHHHHH
Confidence 44 478899999999999999883
No 231
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.95 E-value=0.21 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=20.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+|+||+|||+|++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998764
No 232
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.95 E-value=0.21 Score=48.18 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999988764
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.93 E-value=0.2 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4789999999999999999987654
No 234
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.93 E-value=0.2 Score=48.33 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=22.1
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+++|+||+|||+|++.+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4579999999999999999998763
No 235
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.93 E-value=0.19 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|+||+|||+|++.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988764
No 236
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.92 E-value=0.22 Score=49.17 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.4
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
..++|+++|+||+|||+|+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999988753
No 237
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.91 E-value=0.31 Score=52.34 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=25.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|+|+||||+|||+|++.+++.++..++.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis 35 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELIS 35 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEe
Confidence 68999999999999999999988755544
No 238
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.90 E-value=0.22 Score=47.44 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|+||+|||+|++.+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998764
No 239
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.89 E-value=0.22 Score=47.11 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.9
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+++|++|+|||+|++.+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4579999999999999999988764
No 240
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.88 E-value=0.23 Score=47.84 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.3
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
..+.|+++|++|+|||+|+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999988753
No 241
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.85 E-value=0.27 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=23.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.++++|++|+|||+|++.++.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 6999999999999999999999765
No 242
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.85 E-value=0.17 Score=49.86 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.|+|+|+||+|||++++.+++.++
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999998643
No 243
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.83 E-value=0.25 Score=52.27 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.3
Q ss_pred CceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 356 PTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 356 p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+.++|.+.....|.- +.. . .++++|++|+|||+|++.+++.+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~-~--------------~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-P--------------ITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-S--------------EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHhcChHHHHHHHHH-hcC-C--------------cEEEECCCCCCHHHHHHHHHHhcC
Confidence 356777766555544 322 1 799999999999999999987653
No 244
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.76 E-value=0.23 Score=47.04 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999888754
No 245
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.74 E-value=0.22 Score=51.08 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998764
No 246
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=88.73 E-value=0.27 Score=53.55 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcce
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSV 417 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~ 417 (794)
+++|+|+||+|||++++.++..+...+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 799999999999999999999876543
No 247
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.73 E-value=0.23 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999988754
No 248
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.70 E-value=0.28 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+|+||+|||++++.++..++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999874
No 249
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.65 E-value=0.18 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999987653
No 250
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.64 E-value=0.23 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.0
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|+||+|||+|++.+..-
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999888753
No 251
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.63 E-value=0.23 Score=48.52 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=21.5
Q ss_pred ccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 385 NLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 385 ~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..+..++|+++|+||+|||+|+..+...
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3445679999999999999999988753
No 252
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.54 E-value=0.23 Score=47.47 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.7
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+++|+||+|||+|++.+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999998753
No 253
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.52 E-value=0.25 Score=47.89 Aligned_cols=26 Identities=19% Similarity=-0.013 Sum_probs=22.3
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
...++|+++|++|+|||+|+..+...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34579999999999999999988753
No 254
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.52 E-value=0.2 Score=47.13 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=20.4
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
++|+++|++|+|||+|++.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999998875
No 255
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.45 E-value=0.26 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..+|+++|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998763
No 256
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.44 E-value=0.24 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.1
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.-.++|+|+|++|+|||+|++.+..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3457999999999999999976654
No 257
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.41 E-value=0.22 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+|+||+|||+|++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999864
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.40 E-value=0.15 Score=50.30 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+|++|+|||+|++.++.+++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999865
No 259
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.36 E-value=0.22 Score=47.04 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=21.5
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999988764
No 260
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.29 E-value=0.25 Score=47.42 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=21.5
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|+..+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 379999999999999999998764
No 261
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.26 E-value=0.29 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=21.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.|+|+|+||+|||++++.+++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999854
No 262
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.17 E-value=0.24 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999987643
No 263
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.16 E-value=0.22 Score=48.97 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.|+|+|+||+|||++++.+++.++
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999998643
No 264
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.16 E-value=0.22 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.3
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+.++|+|++|+|||+|++.+.....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999988643
No 265
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.15 E-value=0.26 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.009 Sum_probs=21.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 468999999999999999998753
No 266
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.13 E-value=0.27 Score=47.68 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999988764
No 267
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.12 E-value=0.27 Score=47.54 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.5
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-.++|+++|++|+|||+|++.+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3479999999999999999887653
No 268
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.07 E-value=0.24 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.378 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999987654
No 269
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.06 E-value=0.27 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 369999999999999999988764
No 270
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.05 E-value=0.3 Score=47.51 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=23.5
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
..|.|+|++|+|||++++.+++. ...++
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 36999999999999999999997 44444
No 271
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.03 E-value=0.23 Score=47.39 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..|+|+|+||+|||+|++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 272
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.00 E-value=0.17 Score=50.92 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=15.2
Q ss_pred eEEEeCCCcchHHHHHHHHH-hhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAA-GIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~-~~~p~ 415 (794)
-+.|+||+|+|||++++.++ ...|.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 47899999999999999999 88764
No 273
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=87.96 E-value=0.27 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+..-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999888764
No 274
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.95 E-value=0.24 Score=51.20 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999987653
No 275
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=87.94 E-value=0.27 Score=47.48 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.0
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-.++|+++|+||+|||+|++.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3479999999999999999988764
No 276
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=87.92 E-value=0.27 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988764
No 277
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.92 E-value=0.27 Score=47.24 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.9
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+++|++|+|||+|++.+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999988764
No 278
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.91 E-value=0.25 Score=47.44 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=21.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.|.|+|++|+|||++++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999875
No 279
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.90 E-value=0.29 Score=50.16 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=23.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCcc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRS 416 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~ 416 (794)
..|.|.|+||+|||++++.+++.++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 479999999999999999999976643
No 280
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=87.86 E-value=0.52 Score=48.13 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.7
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+|+|+||+|||+|+..+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998753
No 281
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.85 E-value=0.28 Score=47.14 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=21.3
Q ss_pred cceeEEEeCCCcchHHHHHHHHHh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
-.++|+++|++|+|||+|++.+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 357999999999999999998875
No 282
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.83 E-value=0.2 Score=47.82 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.3
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 37999999999999999988763
No 283
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.83 E-value=0.32 Score=53.44 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.++|+||||+|||+|++.++....
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 689999999999999999998653
No 284
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.83 E-value=0.25 Score=48.74 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=19.3
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
-++|+|+||+|||+|+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999999987
No 285
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.79 E-value=0.24 Score=47.20 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999988753
No 286
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.79 E-value=0.25 Score=49.59 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=19.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-++|+|+||+|||+|++.++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4799999999999999999873
No 287
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.73 E-value=0.21 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+||.|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998764
No 288
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.73 E-value=0.26 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|+.|+|||+|++.++.+.++
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999987653
No 289
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.70 E-value=0.49 Score=51.13 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=26.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
.|+|+||+|+|||+|+..+++.++..+...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~ 71 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINS 71 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEEC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcc
Confidence 689999999999999999999988655543
No 290
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=87.65 E-value=0.29 Score=46.92 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.5
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|+||+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999998764
No 291
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.65 E-value=0.29 Score=48.56 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=21.7
Q ss_pred ccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 385 NLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 385 ~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.....++|+++|++|+|||+|++.+...
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3445689999999999999999888764
No 292
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.65 E-value=0.27 Score=50.42 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|+.|+|||+|++.++.+.++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5799999999999999999998754
No 293
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.63 E-value=0.27 Score=49.94 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4789999999999999999998754
No 294
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=87.61 E-value=0.3 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.8
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+++|++|+|||+|++.+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999988764
No 295
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.53 E-value=0.19 Score=49.86 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.|+|+|+||+|||++++.++..++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999998765
No 296
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.52 E-value=0.35 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=21.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.|+|+|++|+|||+|++.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998763
No 297
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.51 E-value=0.27 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3789999999999999999987653
No 298
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.48 E-value=0.27 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999988654
No 299
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.46 E-value=0.25 Score=47.60 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.8
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.++|+++|++|+|||+|+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998763
No 300
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=87.46 E-value=0.3 Score=47.14 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.5
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 479999999999999999988764
No 301
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.43 E-value=0.28 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 4789999999999999999987654
No 302
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.41 E-value=0.26 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 469999999999999999988764
No 303
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.37 E-value=0.28 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+||.|+|||+|++.++.+.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4789999999999999999987654
No 304
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.30 E-value=0.31 Score=48.36 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=26.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeec
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTS 420 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~ 420 (794)
.|.|+|+||+|||++++.+++.++..++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 689999999999999999999877666654
No 305
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=87.25 E-value=0.46 Score=55.76 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHH-HHHHhh
Q 003809 361 HQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFL-KYAAGI 412 (794)
Q Consensus 361 ~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll-~~i~~~ 412 (794)
++.-+.|+..+|.... -.||.||||||||+.+ ..|..+
T Consensus 191 N~~Q~~AV~~al~~~~--------------~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKE--------------LAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CHHHHHHHHHHHHCSS--------------EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCC--------------ceEEECCCCCCHHHHHHHHHHHH
Confidence 3455778877775432 3699999999999754 344333
No 306
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.24 E-value=0.27 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.7
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|+||+|||+|++.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999998874
No 307
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.23 E-value=0.31 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.5
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+++|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3469999999999999999998764
No 308
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.20 E-value=0.29 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=20.3
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
++|+++|++|+|||+|++.+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999885
No 309
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=87.19 E-value=0.31 Score=47.30 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=21.1
Q ss_pred ccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 385 NLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 385 ~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.....++|+++|++|+|||+|++.+...
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3445679999999999999999888753
No 310
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.18 E-value=0.27 Score=47.42 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.3
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-.++|+++|++|+|||+|++.+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34789999999999999999887653
No 311
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.17 E-value=0.29 Score=51.16 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|+.|+|||+|++.++.+.++
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999987653
No 312
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.08 E-value=0.4 Score=47.61 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=23.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
..|.|.|++|+|||++++.++. +...++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 3689999999999999999998 544444
No 313
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.04 E-value=0.21 Score=47.54 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=10.9
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|+||+|||+|++.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999988764
No 314
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.02 E-value=0.3 Score=50.58 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999987643
No 315
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.98 E-value=0.3 Score=51.26 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4789999999999999999987654
No 316
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.96 E-value=0.31 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=21.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.+.|+|++|+|||+|++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47999999999999999999875
No 317
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.89 E-value=0.3 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4789999999999999999987653
No 318
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.77 E-value=0.27 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.|+++|+||+|||+|++.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998764
No 319
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.77 E-value=0.29 Score=49.51 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=25.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceeecC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYTSG 421 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~~g 421 (794)
.|.|+|+||+|||++++.++..++..++..+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 5899999999999999999987665555433
No 320
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=86.75 E-value=0.3 Score=47.72 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988764
No 321
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.69 E-value=0.32 Score=50.23 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998764
No 322
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=86.66 E-value=0.33 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+|+|++|+|||+|++.+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 479999999999999999988753
No 323
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=86.62 E-value=0.36 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
+.|+|+|+||+|||+|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999988874
No 324
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.60 E-value=0.36 Score=47.73 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=24.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.|.|+|.+|+|||++++.+++.+...++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 68999999999999999999975555543
No 325
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.54 E-value=0.5 Score=46.97 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred ccccceeEEEeCCCcchHH-HHHHHHHhh
Q 003809 385 NLRGDINVCIVGDPSCAKS-QFLKYAAGI 412 (794)
Q Consensus 385 ~~Rg~iniLLvG~PGtGKS-~Ll~~i~~~ 412 (794)
...|.+ .+++|+.|+||| .|++.+.+.
T Consensus 17 ~~~g~l-~fiyG~MgsGKTt~Ll~~i~n~ 44 (195)
T 1w4r_A 17 KTRGQI-QVILGPMFSGKSTELMRRVRRF 44 (195)
T ss_dssp --CCEE-EEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEE-EEEECCCCCcHHHHHHHHHHHH
Confidence 344555 578999999999 888888775
No 326
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=86.52 E-value=0.34 Score=46.88 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=20.8
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988653
No 327
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.49 E-value=0.24 Score=47.12 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.2
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|+||+|||+|+..+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999988763
No 328
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.49 E-value=0.33 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|+.|+|||+|++.++.+.++
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4789999999999999999987653
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.38 E-value=0.36 Score=46.13 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=22.1
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
....+|+++|++|+|||+|++.+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34568999999999999999988764
No 330
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.34 E-value=0.33 Score=50.38 Aligned_cols=24 Identities=13% Similarity=0.175 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.++|+||+|+|||++++.++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 589999999999999999998764
No 331
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=86.25 E-value=0.36 Score=47.39 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=20.8
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999888764
No 332
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.23 E-value=0.28 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.6
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-.++|+++|++|+|||+|++.+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3479999999999999999998764
No 333
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.22 E-value=0.33 Score=47.10 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.0
Q ss_pred cceeEEEeCCCcchHHHHHHHHHh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
..++|+++|+||+|||+|++.+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998864
No 334
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=86.18 E-value=0.31 Score=47.57 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.8
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 469999999999999999988753
No 335
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.99 E-value=0.36 Score=46.36 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=21.3
Q ss_pred EEEeCCCcchHHHHHHHHHhhCCc
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+|+|+.|+|||+|++++...+..
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 579999999999999999987653
No 336
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.99 E-value=0.32 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.8
Q ss_pred cceeEEEeCCCcchHHHHHHHHHh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
..+.|+++|+||+|||+|++.+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999988753
No 337
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=85.88 E-value=0.35 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.5
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998864
No 338
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=85.87 E-value=0.39 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Confidence 4789999999999999999998765
No 339
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.87 E-value=0.35 Score=47.64 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=21.1
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 368999999999999999987753
No 340
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=85.86 E-value=1.3 Score=44.74 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=47.1
Q ss_pred ccccceeEEEeCCCcchHHH-HHHHHHhhCC--c--ceeec--------CCccCcccccccc--ccCCCCcccccccCce
Q 003809 385 NLRGDINVCIVGDPSCAKSQ-FLKYAAGIVP--R--SVYTS--------GKSSSAAGLTASV--AKEPETGEFCIEAGAL 449 (794)
Q Consensus 385 ~~Rg~iniLLvG~PGtGKS~-Ll~~i~~~~p--~--~~~~~--------g~~ss~~gLt~~v--~~d~~~g~~~~~~Gal 449 (794)
.-+|.|+ +++|+-|+|||+ |++.+.+... . .++.. +..++..|+.... +.+ ..+. +. .
T Consensus 25 ~~~G~I~-vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~--~~di-~~---~ 97 (219)
T 3e2i_A 25 YHSGWIE-CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISK--ASEI-MT---H 97 (219)
T ss_dssp --CCEEE-EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESS--GGGG-GG---S
T ss_pred cCCceEE-EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCC--HHHH-HH---H
Confidence 3456676 669999999999 6677665522 1 12221 1222333332211 111 0110 00 0
Q ss_pred eecCCCeEEecccccCChhhHHHHHHHhhccE
Q 003809 450 MLADNGICCIDEFDKMDIRDQVAIHEAMEQQT 481 (794)
Q Consensus 450 ~lad~GIl~IDE~dk~~~~~~~~L~eame~~~ 481 (794)
...+.-+++|||..-++++....+.++.+.+.
T Consensus 98 i~~~~dvV~IDEaQFf~~~~v~~l~~la~~gi 129 (219)
T 3e2i_A 98 DLTNVDVIGIDEVQFFDDEIVSIVEKLSADGH 129 (219)
T ss_dssp CCTTCSEEEECCGGGSCTHHHHHHHHHHHTTC
T ss_pred HhcCCCEEEEechhcCCHHHHHHHHHHHHCCC
Confidence 11244699999999999877777766665443
No 341
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.85 E-value=0.36 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+||.|+|||+|++.++.+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 589999999999999999998654
No 342
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.84 E-value=0.22 Score=49.12 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-|.|+|++|+|||++++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998764
No 343
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=85.81 E-value=0.32 Score=47.24 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=21.7
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
..++|+++|++|+|||+|++++....
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999877643
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.77 E-value=0.43 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998754
No 345
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.70 E-value=0.4 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4789999999999999999998765
No 346
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.70 E-value=0.34 Score=46.91 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|++.+..-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988763
No 347
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.58 E-value=0.4 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCC
Confidence 3789999999999999999998764
No 348
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.44 E-value=0.39 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.9
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-.++|+++|++|+|||+|++.+...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999988864
No 349
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.42 E-value=0.42 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 3789999999999999999998764
No 350
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=85.38 E-value=0.42 Score=52.49 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Confidence 3689999999999999999998765
No 351
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=85.37 E-value=0.37 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.7
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|++|+|||+|++.+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999998875
No 352
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.31 E-value=0.71 Score=49.28 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=24.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
-++|+||+|+|||+|+..+++.++..+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 3789999999999999999998875444
No 353
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.30 E-value=0.28 Score=47.18 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.2
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++|+++|++|+|||+|++.+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3479999999999999999887654
No 354
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.27 E-value=0.3 Score=52.14 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|++|+|||+|++.++.+++.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHHhhccc
Confidence 5789999999999999999998754
No 355
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.27 E-value=0.37 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 3789999999999999999998765
No 356
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=85.25 E-value=0.4 Score=46.93 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.1
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 368999999999999999988754
No 357
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=85.25 E-value=0.39 Score=46.85 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.5
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999988864
No 358
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.24 E-value=0.47 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-+.|+|+||+|||+|++.++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 359
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=85.24 E-value=0.39 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3789999999999999999998764
No 360
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=85.20 E-value=0.44 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 4789999999999999999998764
No 361
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.20 E-value=0.4 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 358999999999999999988764
No 362
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=85.09 E-value=0.41 Score=46.96 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.0
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 368999999999999999888753
No 363
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.97 E-value=0.45 Score=52.14 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCC
Confidence 3789999999999999999998764
No 364
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.96 E-value=0.39 Score=48.70 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-|.|.|+||+|||++++.+++.++
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999875
No 365
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=84.95 E-value=0.4 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=20.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|.|+|+||+|||+|++.+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998764
No 366
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=84.88 E-value=0.5 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.7
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-.++|+++|+||+|||+|++.+..-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3479999999999999999888753
No 367
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=84.87 E-value=0.48 Score=47.07 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+++|++|+|||+|++.+...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999988764
No 368
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.77 E-value=0.56 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=22.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-++|+|+||+|||+|+..+++...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 689999999999999999998765
No 369
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.61 E-value=0.39 Score=48.13 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.6
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
-++|+|+||+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999766654
No 370
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.53 E-value=0.55 Score=47.05 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=17.3
Q ss_pred eEEEeCCCcchHHHHHHHHH
Q 003809 391 NVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~ 410 (794)
-+++.|+||+|||+|+-.++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999987654
No 371
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.44 E-value=0.72 Score=49.35 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=24.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
-|+|+||+|+|||+|+..+++.++..+.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~ii 32 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVI 32 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcccee
Confidence 4789999999999999999998875443
No 372
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.40 E-value=0.39 Score=50.20 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-++|+|+||+|||+|++.++..+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998864
No 373
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=84.36 E-value=0.83 Score=52.52 Aligned_cols=47 Identities=21% Similarity=0.070 Sum_probs=34.5
Q ss_pred CCceechhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHh
Q 003809 355 GPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 355 ~p~I~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.+.++|.+.....|.-.|..+.. + .--++|+|++|+|||+|++.++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~-----~-----~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKG-----E-----PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTT-----S-----CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcccC-----C-----CceEEEEcCCCCCHHHHHHHHHh
Confidence 35688999888877776653210 0 01589999999999999988854
No 374
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=84.35 E-value=0.46 Score=45.76 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=21.4
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
...+|+++|++|+|||+|++.+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999988764
No 375
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=84.34 E-value=0.48 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=21.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-|+|+|+||+|||++++.+++.++
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999988653
No 376
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=84.34 E-value=0.52 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.1
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+|+|+||+|||+|+..+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 358999999999999999998763
No 377
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.32 E-value=0.28 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.4
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
..++|+|++|+|||+|++.+....
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999998877543
No 378
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.30 E-value=0.42 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++.|+|++|+|||+|++.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999986
No 379
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=84.25 E-value=0.56 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.3
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
...+.|+|+|+||+|||+|+..+..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3447899999999999999988764
No 380
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=84.22 E-value=0.35 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.1
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|+||+|||+|+..+..
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999988753
No 381
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.21 E-value=0.43 Score=47.01 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=21.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-+.|+|++|+|||++++.++..+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
No 382
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=84.19 E-value=0.5 Score=48.08 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=21.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|.|++|+|||+|++.++..++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999764
No 383
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=84.18 E-value=0.44 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-+.|+|+||+|||+|++.+....
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999998764
No 384
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.18 E-value=1.2 Score=49.19 Aligned_cols=29 Identities=24% Similarity=0.191 Sum_probs=24.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
-|+|.||+|+|||+|+..+++.++..+..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 47899999999999999999988765443
No 385
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.90 E-value=0.49 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|+.|+|||+|++.++.+.++
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Confidence 5899999999999999999987653
No 386
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.83 E-value=0.66 Score=50.13 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCccee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVY 418 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~ 418 (794)
-|+|+||+|+|||+|++.++..++..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~ii 36 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEII 36 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCcee
Confidence 5899999999999999999998875443
No 387
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=83.77 E-value=0.84 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|++|+|||+|++.+..+.+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc
Confidence 6899999999999999999997653
No 388
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.76 E-value=0.55 Score=52.27 Aligned_cols=25 Identities=16% Similarity=0.180 Sum_probs=22.0
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
++|+|+|++|+|||+|++.++....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4789999999999999999988643
No 389
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=83.75 E-value=0.29 Score=47.48 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=6.5
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-.++|+++|++|+|||+|+..+...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4579999999999999999887654
No 390
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=83.70 E-value=0.56 Score=46.81 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.9
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
...|+++|++|+|||+|+..+...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988753
No 391
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=83.68 E-value=0.38 Score=47.04 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
+.|+++|+||+|||+|++.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998864
No 392
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=83.63 E-value=0.42 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+|+|++|+|||+|++.+...
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998753
No 393
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.51 E-value=0.44 Score=49.46 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.6
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+|.+ ++|+|+||+|||+|+..++..+
T Consensus 29 ~G~i-~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTV-GALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSE-EEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCE-EEEEcCCCCCHHHHHHHHHHHH
Confidence 4554 7899999999999999988753
No 394
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.48 E-value=0.48 Score=52.74 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.++++||+|+|||++++++....+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCC
Confidence 5899999999999999999987653
No 395
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=83.44 E-value=0.48 Score=42.08 Aligned_cols=31 Identities=29% Similarity=0.657 Sum_probs=23.6
Q ss_pred EEEEEEEecCCCceeeeeeccccccCCcCCCCCCCCCC
Q 003809 149 LLQGTFKCLECGGVIKNVEQQFKYTEPTICANATCSNR 186 (794)
Q Consensus 149 l~~~~f~C~~C~~~~~~v~q~~~~t~P~~C~~~~C~~~ 186 (794)
|...-|+|.+||+.+ ......|.+| |.|++.
T Consensus 63 L~v~p~~C~~CG~~F-----~~~~~kPsrC--P~CkSe 93 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVF-----KAEINIPSRC--PKCKSE 93 (105)
T ss_dssp EEECCCBBTTTCCBC-----CCCSSCCSSC--SSSCCC
T ss_pred EEEECcChhhCcCee-----cccCCCCCCC--cCCCCC
Confidence 444568999999986 2356789999 679875
No 396
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=83.40 E-value=0.52 Score=49.94 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+|++|+|||+|++.++.+++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999998754
No 397
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=83.40 E-value=0.76 Score=52.72 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=32.8
Q ss_pred echhhHHHHHHHHHhCCcccccCCCcccccceeEEEeCCCcchHHHHHHHHHh
Q 003809 359 FGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 359 ~G~e~vK~alll~L~gg~~~~~~~g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
+|.+..+..|.-.|..+... +---|.|+|.+|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~---------~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDL---------DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTS---------SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCC---------CceEEEEEcCCCCCHHHHHHHHHH
Confidence 69998888777666543110 012589999999999999999995
No 398
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=83.37 E-value=0.57 Score=48.87 Aligned_cols=23 Identities=17% Similarity=0.603 Sum_probs=20.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.|.|+|+||+|||+|++.+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999764
No 399
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.31 E-value=0.54 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-+.|+|+.|+|||+|++.++.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 400
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=83.23 E-value=0.56 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.+.|+||.|+|||+|++.++.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999876
No 401
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=83.23 E-value=0.45 Score=50.22 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|+.|+|||+|++.++.+.++
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4789999999999999999988654
No 402
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=83.22 E-value=0.55 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=20.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-+.|+|+.|+|||+|++.++.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
No 403
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=83.01 E-value=0.63 Score=49.26 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=20.8
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.|+|+|+||+|||+|++.+..-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999987653
No 404
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=82.93 E-value=1.6 Score=43.01 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=18.7
Q ss_pred CCeEEecccccCChhhHHHHHHHhhc
Q 003809 454 NGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 454 ~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
-.+++|||+.-++++....|....+.
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999987765555544443
No 405
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=82.81 E-value=0.54 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.4
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|.||+|||+|+..+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999988653
No 406
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.77 E-value=0.58 Score=50.18 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.0
Q ss_pred cccceeEEEeCCCcchHHHHHHHHHh
Q 003809 386 LRGDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 386 ~Rg~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.|| + ++|.||||+|||+|+-.++.
T Consensus 27 ~~G-i-teI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 27 QSG-L-LILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp CSE-E-EEEEESSSSSHHHHHHHHHH
T ss_pred cCC-e-EEEECCCCCCHHHHHHHHHH
Confidence 357 5 89999999999999655443
No 407
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.51 E-value=0.46 Score=50.53 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=23.1
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+|. -+.|+|++|+|||++++.++.+.++
T Consensus 101 ~g~-vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGR-VVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSS-EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCe-EEEEECCCCCcHHHHHHHHHHHHHh
Confidence 344 5788999999999999999987543
No 408
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.29 E-value=1.3 Score=47.21 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=20.0
Q ss_pred EEEeCCCcchHHHHHHHHHhhC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
++|+|+.|+|||+|++.+....
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 6889999999999999999864
No 409
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=82.03 E-value=0.33 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=20.6
Q ss_pred cceeEEEeCCCcchHHHHHHHHHh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
..++|+++|+||+|||+|++.+..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999987764
No 410
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=81.85 E-value=0.54 Score=46.37 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=21.1
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.|+++|++|+|||+|+..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999988763
No 411
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=81.80 E-value=0.73 Score=50.30 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.++
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCC
Confidence 3789999999999999999998754
No 412
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=81.77 E-value=0.78 Score=46.05 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=19.3
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
+.|+|+|++|+|||.|+..+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 5799999999999999977654
No 413
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.74 E-value=2 Score=45.61 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-++|+|++|+|||+++..++..+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 58899999999999999998865
No 414
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.67 E-value=0.56 Score=45.51 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|++|+|||+|++.+..+++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999998654
No 415
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=81.56 E-value=0.65 Score=48.27 Aligned_cols=24 Identities=17% Similarity=0.566 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.++|+|+|+||+|||+|+.++...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998764
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=81.41 E-value=0.7 Score=48.31 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=20.4
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
..|.|.|+||+|||++++.++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999995
No 417
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.35 E-value=0.86 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.1
Q ss_pred ccceeEEEeCCCcchHHHHHHHHH
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~ 410 (794)
+|. -++|+|+||+|||+|++.++
T Consensus 177 ~Ge-i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGS-ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTS-EEEEEESTTSSHHHHHHHHH
T ss_pred CCc-EEEEEcCCCCChHHHHHHHH
Confidence 344 48999999999999999664
No 418
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=81.27 E-value=1.1 Score=52.41 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=17.4
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
..++.||||||||+++..+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~ 217 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVY 217 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 579999999999998766544
No 419
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=81.23 E-value=0.72 Score=48.73 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|++|+|||+|++.++.+.+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 4789999999999999999987654
No 420
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=81.19 E-value=0.56 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+||.|+|||+|++.++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 489999999999999999999764
No 421
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.11 E-value=2 Score=45.52 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=22.5
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
|. -++|+|++|+|||++++.++..++
T Consensus 100 g~-vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PA-VIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CE-EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred Cc-EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44 578999999999999999998754
No 422
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.05 E-value=0.62 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-++|+||||+|||+|+..++..+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999888753
No 423
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.90 E-value=0.67 Score=48.88 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-|.|+|++|+|||+|++.++..++.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999998753
No 424
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=80.70 E-value=0.76 Score=47.45 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|++|+|||+|+..+..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 425
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=80.61 E-value=0.85 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
..|+|+|.||+|||++++.+++.+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998764
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=80.61 E-value=0.81 Score=45.28 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=19.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.|+++|++|+|||+|+..+...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999888765
No 427
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=81.60 E-value=0.33 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.0
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|+||+|||+|++.+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 46899999999999999977754
No 428
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=80.51 E-value=0.92 Score=52.10 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.8
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
+|.+ +.|+||.|+|||+|++.++.+.++
T Consensus 24 ~Gei-~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 24 NNTI-LGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp TTEE-EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCE-EEEECCCCCcHHHHHHHHhcCCCC
Confidence 5665 578899999999999999998654
No 429
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=80.17 E-value=0.74 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.626 Sum_probs=19.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|+|+|+||+|||+|+..+...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999998764
No 430
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.02 E-value=0.89 Score=58.78 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-+|++||||||||+|+++++..
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~ 1105 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAA 1105 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHH
Confidence 3899999999999999998875
No 431
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=79.97 E-value=1.3 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=20.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|++|+|||+|++.+. ..+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhC
Confidence 36899999999999999999 6543
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.65 E-value=0.95 Score=42.61 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.3
Q ss_pred EEEeCCCcchHHHHHHHHHhhC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.+|+||.|+|||+++.++.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999998643
No 433
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=79.64 E-value=0.95 Score=50.42 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.9
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+.+.+.|+|+||+|||+|++.+....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 45799999999999999999998753
No 434
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.58 E-value=0.89 Score=48.85 Aligned_cols=27 Identities=15% Similarity=0.109 Sum_probs=22.7
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+|. -++|+|++|+|||++++.++...+
T Consensus 128 ~g~-vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPY-VIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHHHHH
Confidence 344 478999999999999999998754
No 435
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=79.45 E-value=0.83 Score=45.03 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.++++|.||+|||+|+..+...+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999998887653
No 436
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.39 E-value=2.2 Score=44.97 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.9
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+|. .++|+|++|+|||+++..++..+
T Consensus 104 ~g~-vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSK-YIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSS-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCc-EEEEECCCCCCHHHHHHHHHHHH
Confidence 344 58889999999999999998765
No 437
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=79.32 E-value=0.93 Score=45.61 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.7
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|. -+.|.|+.|+|||++++.++..
T Consensus 19 ~g~-~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPF-TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCE-EEEEECSTTSCHHHHHHTTGGG
T ss_pred Cce-EEEEECCCCCCHHHHHHHHHhc
Confidence 443 5899999999999999999886
No 438
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=79.08 E-value=0.94 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+|++|+|||+|++.+....+
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 478999999999999999998764
No 439
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=79.06 E-value=1.2 Score=53.54 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=17.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..++.||||||||+++..+...
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4799999999999987665543
No 440
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=78.89 E-value=0.95 Score=48.74 Aligned_cols=22 Identities=14% Similarity=0.006 Sum_probs=19.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-++|+|+||+|||+|+..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988874
No 441
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.85 E-value=0.99 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=20.8
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-|++++|++|+|||++++.+...
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 39999999999999999998864
No 442
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=78.82 E-value=0.65 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-++|+|+.|+|||+|+|.++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 489999999999999999999875
No 443
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=78.76 E-value=0.92 Score=46.26 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=23.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
.+-|.|+||+|||++++.+++.+....+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 57899999999999999999876554443
No 444
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=78.75 E-value=6.5 Score=32.39 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=38.0
Q ss_pred cccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhh
Q 003809 572 VAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKT 614 (794)
Q Consensus 572 ~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~ 614 (794)
.+-++|..+|.++++-|.-.|-.+.+..|+.+|+..|+.-+..
T Consensus 33 ~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 33 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 4457899999999999999999999999999999999986643
No 445
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.66 E-value=0.86 Score=49.50 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|++|+|||+|++.+...
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999997653
No 446
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=78.59 E-value=0.7 Score=45.66 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.2
Q ss_pred cceeEEEeCCCcchHHHHHHH-HHh
Q 003809 388 GDINVCIVGDPSCAKSQFLKY-AAG 411 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~-i~~ 411 (794)
-.++|+++|++|+|||+|++. +..
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 347999999999999999987 433
No 447
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=78.55 E-value=1.2 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.2
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
..+.|+|+||+|||+|++.+....
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 448
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=78.46 E-value=1 Score=47.53 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.|.|+|+||+|||+|++.+...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999864
No 449
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=78.38 E-value=0.83 Score=46.92 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.9
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
..|+|.|.+|+|||++++.+++.++.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 36899999999999999999988743
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=78.23 E-value=1.2 Score=44.96 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.|.|.|.+|+|||++++.+++.++.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998753
No 451
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.13 E-value=1.3 Score=58.01 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=20.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+++|+||||||||+|+.+++..+
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999998887653
No 452
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=77.84 E-value=2.1 Score=45.18 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.9
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-|.++|+||+|||+|+..+...
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999988763
No 453
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=77.81 E-value=0.89 Score=48.47 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
-++|+|+||+|||+|+..++..
T Consensus 109 i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHH
Confidence 4899999999999999888764
No 454
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=77.74 E-value=2.8 Score=45.52 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=22.9
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhhCC
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
+|. -++|+|++|+|||++++.++.+++
T Consensus 156 ~g~-vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPA-VIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSE-EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCe-EEEEEcCCCChHHHHHHHHHhhcc
Confidence 344 588999999999999999998754
No 455
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.54 E-value=0.93 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=20.1
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|. -++|+|+||+|||+|+..++..
T Consensus 60 ~G~-iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGR-VIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTS-EEEEEESTTSSHHHHHHHHHHH
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHHH
Confidence 344 3789999999999998877754
No 456
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=77.46 E-value=1.3 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.8
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+|++|+|||+|++.++....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999999864
No 457
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=77.33 E-value=1.2 Score=43.20 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=20.7
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+|++|+|||+|++.+...++
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcc
Confidence 478999999999999999887643
No 458
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=77.27 E-value=1.5 Score=48.65 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=14.6
Q ss_pred eEEEeCCCcchHHHHH
Q 003809 391 NVCIVGDPSCAKSQFL 406 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll 406 (794)
++|++||+|+|||..+
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 7999999999999864
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=77.22 E-value=1.1 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHhhC
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.-|+|+|.||+|||++++.+++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998765
No 460
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=77.03 E-value=1.2 Score=49.87 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+|++|+|||+|++.++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4799999999999999999998653
No 461
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=77.00 E-value=1.1 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|++|+|||+|+.++..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999886
No 462
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=76.90 E-value=7.4 Score=32.44 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=39.1
Q ss_pred ccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhhhcc
Q 003809 571 RVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHVRVAVRLLKTSVI 617 (794)
Q Consensus 571 ~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv~eAi~L~~~s~~ 617 (794)
..+-++|...|.++++-|.-.|-.+....|+.+|+..|+.-+..|+.
T Consensus 30 ~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 30 ARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp TSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 34567999999999999999998888899999999999998776643
No 463
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.80 E-value=0.99 Score=47.86 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=20.7
Q ss_pred ccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 387 RGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 387 Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|. -++|+|+||+|||+|+..++..
T Consensus 97 ~g~-i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQS-VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTE-EEEEEESTTSSHHHHHHHHHHH
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHHH
Confidence 344 4899999999999999888764
No 464
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=76.80 E-value=0.59 Score=49.82 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=19.6
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-+.|+|+||+|||+|++.+....+
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHhccccc
Confidence 579999999999999999987643
No 465
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.76 E-value=1.3 Score=43.38 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.9
Q ss_pred eeEEEeCCCcchHHHHHHHHHh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.-+||.|++|+|||+++..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999988877
No 466
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=76.72 E-value=2.1 Score=43.08 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.9
Q ss_pred eEEEeCCCcchHHHHHHHH
Q 003809 391 NVCIVGDPSCAKSQFLKYA 409 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i 409 (794)
+++++|++|+|||+++...
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 7999999999999765544
No 467
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=76.71 E-value=1.2 Score=48.00 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=22.4
Q ss_pred eEEEeCCCcchHHHHHHHHHh--hCCcc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG--IVPRS 416 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~--~~p~~ 416 (794)
.|.++|++|+|||+|+.++.. ++|+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~ 63 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence 699999999999999999988 44553
No 468
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=76.58 E-value=6.7 Score=44.98 Aligned_cols=20 Identities=10% Similarity=-0.066 Sum_probs=16.6
Q ss_pred eEEEeCCCcchHHHHHHHHH
Q 003809 391 NVCIVGDPSCAKSQFLKYAA 410 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~ 410 (794)
++|+++++|+|||..+-.++
T Consensus 200 ~~ll~~~TGsGKT~~~~~~~ 219 (590)
T 3h1t_A 200 RSLITMATGTGKTVVAFQIS 219 (590)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEecCCCChHHHHHHHH
Confidence 68999999999999865444
No 469
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=76.57 E-value=1.2 Score=43.28 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=20.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
-+.|+|++|+|||+|+..+...+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 37899999999999999988764
No 470
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=76.55 E-value=1.1 Score=48.89 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=20.7
Q ss_pred cccccee-EEEeCCCcchHHHHHHHHHhh
Q 003809 385 NLRGDIN-VCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 385 ~~Rg~in-iLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.|..+. +.|+|+||+|||+|++.+...
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 3444455 899999999999999999864
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=76.08 E-value=1.3 Score=50.74 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.+.|+|+.|+|||+|++.++.+.++
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998754
No 472
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=76.02 E-value=6.8 Score=39.33 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=18.6
Q ss_pred CCeEEecccccCChhhHHHHHHHhhc
Q 003809 454 NGICCIDEFDKMDIRDQVAIHEAMEQ 479 (794)
Q Consensus 454 ~GIl~IDE~dk~~~~~~~~L~eame~ 479 (794)
-.+++|||+.-++++....|..+.+.
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCEEEEECcccCCHHHHHHHHHHhhC
Confidence 46999999999988766555443333
No 473
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=75.85 E-value=1.5 Score=43.37 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=26.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCcceee
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPRSVYT 419 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~~~~~ 419 (794)
-|.|.|++|+|||++++.+++.+...++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999998877764
No 474
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=75.72 E-value=3.4 Score=46.90 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.4
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-++|+|++|+|||+|++.++.++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhh
Confidence 488999999999999999998753
No 475
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=75.58 E-value=1.4 Score=48.53 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.3
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
....+.|+|+||+|||+|++++...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457999999999999999999864
No 476
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=75.36 E-value=1.4 Score=46.18 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.5
Q ss_pred cceeEEEeCCCcchHHHHHHHHHh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
..+.++++|.||+|||+|+..+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 457899999999999999999875
No 477
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=75.32 E-value=1.1 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.6
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
..|+++|+||+|||+|+.++...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 47999999999999999998753
No 478
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.31 E-value=1.5 Score=42.99 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEeCCCcchHHHHHHHHHhh
Q 003809 392 VCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+|++|++|+|||+++..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 699999999999999988865
No 479
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=75.29 E-value=1.1 Score=51.20 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=23.9
Q ss_pred eEEEeCCCcchHHHHHHH--HHhhCC---cceeecCC
Q 003809 391 NVCIVGDPSCAKSQFLKY--AAGIVP---RSVYTSGK 422 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~--i~~~~p---~~~~~~g~ 422 (794)
.++|+|++|+|||+|++. ++.+.+ ..+|..+.
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 478999999999999999 455543 34555554
No 480
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=75.26 E-value=1.3 Score=47.80 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.3
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhhC
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
+...++++|+||+|||+|++.+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999987643
No 481
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=75.01 E-value=1.3 Score=50.11 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=22.5
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCCc
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5789999999999999999998654
No 482
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=74.73 E-value=1.5 Score=46.33 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=19.6
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
.|.|+|.||+|||+|+..+..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999999875
No 483
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=74.69 E-value=2.5 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=21.9
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.++|.++|+||+|||+|+..+...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 3479999999999999999998764
No 484
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=74.66 E-value=1.4 Score=46.69 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=18.4
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
=++|.|+||+|||+|+..++.
T Consensus 70 l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 379999999999999988775
No 485
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=74.60 E-value=1.4 Score=50.65 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=22.1
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
.+.|+|++|+|||+|++.++..++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhc
Confidence 689999999999999999999864
No 486
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=74.54 E-value=0.42 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.9
Q ss_pred ceeEEEeCCCcchHHHHHHHHHh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~ 411 (794)
.++|+++|++|+|||+|++.+..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999877654
No 487
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=74.52 E-value=0.76 Score=46.72 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=20.3
Q ss_pred EEeCCCcchHHHHHHHHHhhCCc
Q 003809 393 CIVGDPSCAKSQFLKYAAGIVPR 415 (794)
Q Consensus 393 LLvG~PGtGKS~Ll~~i~~~~p~ 415 (794)
.|+||+|+|||+|+++++.+++.
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhccccc
Confidence 57799999999999999998654
No 488
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=74.34 E-value=3.3 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.0
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.|.|+|.||+|||+|+..++..
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988765
No 489
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=74.24 E-value=1.8 Score=52.08 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=17.0
Q ss_pred eEEEeCCCcchHHHHHHHHHh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAG 411 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~ 411 (794)
.+|+.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 579999999999987755543
No 490
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=74.19 E-value=1.5 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.3
Q ss_pred ceeEEEeCCCcchHHHHHHHHHhh
Q 003809 389 DINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 389 ~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
...+.|+|+||+|||+|++.+...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 347999999999999999999873
No 491
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=74.01 E-value=1.2 Score=50.17 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=25.2
Q ss_pred CcccccceeEEEeCCCcchHHHHHHHHHhh
Q 003809 383 GINLRGDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 383 g~~~Rg~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
|-.+|..++|.|+|+||+|||+|+..+...
T Consensus 218 ~~~~r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 218 GELLRTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHHHHHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred hhhhcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345566789999999999999999998764
No 492
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=73.97 E-value=1.5 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhh
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~ 412 (794)
.+.|+|+||+|||+|++.+...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 493
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=73.70 E-value=1.6 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
++|+++|+||+|||+|+..+..-
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCChHHHHHHHHhC
Confidence 58999999999999999887653
No 494
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=73.66 E-value=1.4 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.5
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.++++|.||+|||+|+..+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 47999999999999999998853
No 495
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=73.63 E-value=14 Score=30.61 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=50.8
Q ss_pred cccHHHHHHHHHHHhccCCcCCHHHHHHHHHHHHHhccCCCCCCCccccccCHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Q 003809 526 AFTTAQLKRYIAYAKTLKPKLSLEARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVHPRHV 605 (794)
Q Consensus 526 ~~~~~~lr~yi~~ar~~~P~ls~ea~~~L~~~Y~~lR~~~~~~~~~~~~~iT~R~LesliRlseA~Arl~~~~~V~~~dv 605 (794)
.+|..-+++.+..+-- .-.++.+|...+.+.+... ++.|..-|...|+-..+.+|+.+||
T Consensus 4 ~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~F-------------------i~~la~eA~~~a~~~~rKTI~~~dI 63 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLF-------------------LHRLAEEARTNAFENKSKIIKPEHT 63 (76)
T ss_dssp CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHTCSSBCHHHH
T ss_pred cccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 3566667777654422 3467899999888766443 4557777788899999999999999
Q ss_pred HHHHHHHh
Q 003809 606 RVAVRLLK 613 (794)
Q Consensus 606 ~eAi~L~~ 613 (794)
..|++.+-
T Consensus 64 ~~A~~~ll 71 (76)
T 3b0c_W 64 IAAAKVIL 71 (76)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 496
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=73.36 E-value=1.1 Score=51.29 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=21.2
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-++|+|+||+|||+|++.++...+
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999987654
No 497
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=73.33 E-value=1.6 Score=47.36 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=19.9
Q ss_pred cceeEEEeCCCcchHHHHHHHHHhh
Q 003809 388 GDINVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 388 g~iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
|. -++|.|+||+|||+|+..++..
T Consensus 63 G~-ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 63 GR-IVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TS-EEEEECSTTSSHHHHHHHHHHH
T ss_pred Ce-EEEEECCCCCCHHHHHHHHHHH
Confidence 44 4789999999999999877754
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.08 E-value=1.8 Score=42.90 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEeCCCcchHHHHHHHHHhhC
Q 003809 392 VCIVGDPSCAKSQFLKYAAGIV 413 (794)
Q Consensus 392 iLLvG~PGtGKS~Ll~~i~~~~ 413 (794)
.+|+|+.|+|||+++.++...+
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4889999999999999998654
No 499
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=72.92 E-value=1.8 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.7
Q ss_pred eeEEEeCCCcchHHHHHHHHHhh
Q 003809 390 INVCIVGDPSCAKSQFLKYAAGI 412 (794)
Q Consensus 390 iniLLvG~PGtGKS~Ll~~i~~~ 412 (794)
+.+.|+|.||+|||+|++++...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37899999999999999999874
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=72.59 E-value=1.8 Score=43.31 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.3
Q ss_pred eEEEeCCCcchHHHHHHHHHhhCC
Q 003809 391 NVCIVGDPSCAKSQFLKYAAGIVP 414 (794)
Q Consensus 391 niLLvG~PGtGKS~Ll~~i~~~~p 414 (794)
-|.|.|++|+|||++++.+++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999988653
Done!