BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003810
         (794 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HNW|A Chain A, Crystal Structure Of A Basic Coiled-coil Protein Of
           Unknown Function From Eubacterium Eligens Atcc 27750
 pdb|3HNW|B Chain B, Crystal Structure Of A Basic Coiled-coil Protein Of
           Unknown Function From Eubacterium Eligens Atcc 27750
          Length = 138

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 7/67 (10%)

Query: 255 FQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQAS---IAELSA---KHQKNLESL 308
           F+ K+ A ++L L ++ KD+ + D++  L AA+ K ++S   I EL +   K+QKN+  L
Sbjct: 71  FKAKKXA-DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129

Query: 309 EAQLADA 315
           E +L D+
Sbjct: 130 ETELNDS 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.123    0.317 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,722,347
Number of Sequences: 62578
Number of extensions: 634429
Number of successful extensions: 2352
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 2132
Number of HSP's gapped (non-prelim): 237
length of query: 794
length of database: 14,973,337
effective HSP length: 107
effective length of query: 687
effective length of database: 8,277,491
effective search space: 5686636317
effective search space used: 5686636317
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)