Query 003810
Match_columns 794
No_of_seqs 253 out of 318
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 12:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 6.1E-32 1.3E-36 337.3 69.8 469 93-625 1188-1684(1930)
2 PF01576 Myosin_tail_1: Myosin 100.0 5.9E-36 1.3E-40 360.7 0.0 472 90-625 127-626 (859)
3 KOG0161 Myosin class II heavy 100.0 3E-23 6.5E-28 260.1 71.5 390 179-600 1322-1740(1930)
4 PF01576 Myosin_tail_1: Myosin 99.9 1.7E-27 3.7E-32 287.7 0.0 406 177-624 262-702 (859)
5 smart00755 Grip golgin-97, Ran 99.4 2.1E-13 4.5E-18 107.8 4.4 43 720-762 1-45 (46)
6 PF01465 GRIP: GRIP domain; I 99.4 1.7E-13 3.6E-18 108.6 3.5 43 719-761 1-46 (46)
7 PRK02224 chromosome segregatio 99.4 4E-06 8.7E-11 103.3 69.4 36 422-457 532-567 (880)
8 KOG4674 Uncharacterized conser 99.3 2E-05 4.4E-10 100.4 74.9 537 54-624 867-1471(1822)
9 TIGR00606 rad50 rad50. This fa 99.3 3.4E-05 7.4E-10 99.1 73.5 57 658-714 984-1042(1311)
10 KOG4674 Uncharacterized conser 99.3 4.1E-05 8.9E-10 97.7 73.2 250 60-317 533-819 (1822)
11 PF10174 Cast: RIM-binding pro 99.2 9E-06 1.9E-10 98.0 57.8 190 422-625 296-489 (775)
12 TIGR02168 SMC_prok_B chromosom 99.2 6.1E-05 1.3E-09 94.6 74.1 32 681-712 995-1026(1179)
13 PF10174 Cast: RIM-binding pro 99.0 0.00021 4.5E-09 86.5 71.9 311 307-624 228-599 (775)
14 PRK03918 chromosome segregatio 99.0 0.00028 6E-09 87.1 70.9 37 307-343 388-424 (880)
15 PRK03918 chromosome segregatio 99.0 0.00042 9.2E-09 85.5 76.0 12 749-760 786-797 (880)
16 PF12128 DUF3584: Protein of u 99.0 0.00061 1.3E-08 87.1 82.7 33 45-77 174-206 (1201)
17 TIGR00606 rad50 rad50. This fa 98.9 0.0011 2.3E-08 85.7 78.4 300 102-406 187-526 (1311)
18 TIGR02168 SMC_prok_B chromosom 98.8 0.0018 3.9E-08 81.5 83.1 18 93-110 185-202 (1179)
19 TIGR02169 SMC_prok_A chromosom 98.7 0.003 6.5E-08 79.8 79.0 8 751-758 1074-1081(1164)
20 PF00038 Filament: Intermediat 98.6 0.001 2.2E-08 72.5 41.2 93 152-259 52-144 (312)
21 PF07888 CALCOCO1: Calcium bin 98.6 0.0012 2.7E-08 76.6 43.4 138 120-272 169-309 (546)
22 PF07888 CALCOCO1: Calcium bin 98.6 0.0035 7.5E-08 73.0 45.1 26 473-498 376-401 (546)
23 KOG4673 Transcription factor T 98.6 0.0042 9E-08 72.7 61.3 59 654-712 848-906 (961)
24 PF12128 DUF3584: Protein of u 98.5 0.011 2.5E-07 75.8 77.3 47 518-564 682-728 (1201)
25 COG1196 Smc Chromosome segrega 98.5 0.017 3.7E-07 74.0 82.2 34 676-709 974-1007(1163)
26 TIGR02169 SMC_prok_A chromosom 98.4 0.019 4.2E-07 72.6 81.6 16 473-488 679-694 (1164)
27 PF00038 Filament: Intermediat 98.3 0.0022 4.8E-08 69.9 34.0 202 58-280 17-229 (312)
28 PF05701 WEMBL: Weak chloropla 98.3 0.017 3.7E-07 68.0 61.9 56 94-149 27-82 (522)
29 COG1196 Smc Chromosome segrega 98.2 0.057 1.2E-06 69.3 75.9 53 120-173 198-251 (1163)
30 PF00261 Tropomyosin: Tropomyo 98.2 0.0042 9.1E-08 65.7 30.6 144 179-334 64-207 (237)
31 KOG0977 Nuclear envelope prote 98.1 0.012 2.6E-07 68.7 35.9 90 178-271 55-145 (546)
32 KOG0977 Nuclear envelope prote 98.1 0.0072 1.6E-07 70.4 33.0 84 246-336 42-125 (546)
33 KOG0994 Extracellular matrix g 98.1 0.068 1.5E-06 66.0 51.3 28 656-683 1722-1749(1758)
34 PF05701 WEMBL: Weak chloropla 98.0 0.062 1.3E-06 63.3 61.1 52 179-230 27-78 (522)
35 PF00261 Tropomyosin: Tropomyo 97.8 0.045 9.7E-07 58.0 30.9 41 185-225 35-75 (237)
36 PF07111 HCR: Alpha helical co 97.8 0.14 3.1E-06 60.9 70.0 70 473-542 540-610 (739)
37 PF05557 MAD: Mitotic checkpoi 97.8 0.00018 3.9E-09 87.4 13.0 21 604-624 562-582 (722)
38 KOG0612 Rho-associated, coiled 97.8 0.27 5.8E-06 61.7 44.1 87 184-270 492-581 (1317)
39 KOG0996 Structural maintenance 97.7 0.31 6.7E-06 60.9 64.7 108 177-284 410-517 (1293)
40 KOG0971 Microtubule-associated 97.7 0.26 5.7E-06 59.9 47.5 80 236-334 228-307 (1243)
41 PF05483 SCP-1: Synaptonemal c 97.7 0.26 5.6E-06 58.6 68.4 215 55-284 179-394 (786)
42 PF15070 GOLGA2L5: Putative go 97.6 0.32 6.9E-06 58.4 47.4 100 160-261 10-109 (617)
43 KOG0976 Rho/Rac1-interacting s 97.5 0.39 8.5E-06 57.7 61.0 101 293-397 253-353 (1265)
44 KOG0963 Transcription factor/C 97.5 0.36 7.8E-06 56.9 35.4 141 110-260 123-270 (629)
45 KOG0996 Structural maintenance 97.5 0.59 1.3E-05 58.6 55.7 34 502-535 930-963 (1293)
46 KOG0971 Microtubule-associated 97.4 0.56 1.2E-05 57.2 41.4 28 234-261 320-347 (1243)
47 PRK01156 chromosome segregatio 97.4 0.67 1.4E-05 58.0 70.0 29 315-343 414-442 (895)
48 PHA02562 46 endonuclease subun 97.4 0.087 1.9E-06 61.9 28.7 50 115-164 181-230 (562)
49 PF15070 GOLGA2L5: Putative go 97.4 0.63 1.4E-05 56.0 48.0 160 450-625 145-310 (617)
50 PF05557 MAD: Mitotic checkpoi 97.3 0.0035 7.6E-08 76.3 16.1 28 505-532 508-535 (722)
51 PRK11637 AmiB activator; Provi 97.2 0.47 1E-05 54.5 31.1 87 96-186 49-135 (428)
52 PRK11637 AmiB activator; Provi 97.2 0.32 7E-06 55.8 29.7 48 98-145 44-91 (428)
53 PF05483 SCP-1: Synaptonemal c 97.2 0.87 1.9E-05 54.3 62.1 203 312-520 487-731 (786)
54 KOG0976 Rho/Rac1-interacting s 97.2 0.98 2.1E-05 54.5 54.3 41 294-334 275-315 (1265)
55 PRK04778 septation ring format 97.2 0.92 2E-05 54.1 53.8 322 177-533 103-437 (569)
56 PRK01156 chromosome segregatio 97.1 1.4 3E-05 55.2 77.4 35 116-150 184-218 (895)
57 PF09726 Macoilin: Transmembra 97.1 0.34 7.3E-06 59.1 28.6 190 412-625 441-660 (697)
58 PF09755 DUF2046: Uncharacteri 97.1 0.7 1.5E-05 50.8 36.5 181 45-282 13-200 (310)
59 PHA02562 46 endonuclease subun 97.0 0.61 1.3E-05 54.9 30.2 107 173-279 168-274 (562)
60 KOG0612 Rho-associated, coiled 97.0 1.7 3.7E-05 54.9 47.1 29 141-173 492-520 (1317)
61 COG0419 SbcC ATPase involved i 97.0 1.8 3.9E-05 54.5 71.2 22 152-173 230-251 (908)
62 KOG4643 Uncharacterized coiled 97.0 1.7 3.6E-05 54.0 57.8 74 472-549 527-602 (1195)
63 KOG4643 Uncharacterized coiled 97.0 1.8 3.9E-05 53.7 51.6 63 122-192 170-232 (1195)
64 PF09726 Macoilin: Transmembra 96.9 0.57 1.2E-05 57.1 28.6 50 140-193 422-474 (697)
65 PF07111 HCR: Alpha helical co 96.9 1.7 3.6E-05 52.3 71.5 271 233-532 243-532 (739)
66 PF05911 DUF869: Plant protein 96.8 2.1 4.5E-05 52.8 35.6 133 401-542 23-162 (769)
67 PF09787 Golgin_A5: Golgin sub 96.8 1.7 3.7E-05 51.3 31.6 44 576-619 337-380 (511)
68 PF12718 Tropomyosin_1: Tropom 96.8 0.17 3.8E-06 49.8 18.8 92 125-224 3-97 (143)
69 PF06160 EzrA: Septation ring 96.7 2.2 4.8E-05 50.9 56.5 337 160-534 81-434 (560)
70 PRK04863 mukB cell division pr 96.7 4.2 9.2E-05 53.7 61.9 47 671-717 836-882 (1486)
71 COG1579 Zn-ribbon protein, pos 96.5 0.43 9.2E-06 50.9 20.9 73 177-256 101-173 (239)
72 KOG1029 Endocytic adaptor prot 96.3 3.9 8.5E-05 49.6 31.9 98 179-276 416-516 (1118)
73 KOG0963 Transcription factor/C 96.2 4 8.6E-05 48.6 45.5 279 233-544 60-340 (629)
74 PRK09039 hypothetical protein; 96.2 0.7 1.5E-05 51.8 21.6 53 94-146 53-105 (343)
75 PRK04863 mukB cell division pr 96.2 7.7 0.00017 51.4 70.3 34 378-411 841-874 (1486)
76 KOG0995 Centromere-associated 96.2 4.1 8.9E-05 48.1 43.8 309 126-447 232-566 (581)
77 COG1579 Zn-ribbon protein, pos 96.1 1.3 2.8E-05 47.3 22.1 86 185-272 37-122 (239)
78 PF13851 GAS: Growth-arrest sp 96.1 1 2.2E-05 46.9 21.0 105 93-198 26-133 (201)
79 PRK09039 hypothetical protein; 96.1 1 2.2E-05 50.5 22.4 6 70-75 32-37 (343)
80 PF14662 CCDC155: Coiled-coil 96.0 1.5 3.3E-05 45.2 20.9 161 56-225 5-169 (193)
81 KOG0933 Structural maintenance 95.9 7.4 0.00016 48.7 57.3 103 489-600 758-860 (1174)
82 PF13514 AAA_27: AAA domain 95.8 9.5 0.00021 49.3 69.9 53 659-711 897-951 (1111)
83 KOG0946 ER-Golgi vesicle-tethe 95.8 7.2 0.00016 47.7 29.4 184 178-372 677-864 (970)
84 PF05622 HOOK: HOOK protein; 95.7 0.0026 5.7E-08 77.3 0.0 85 177-272 330-417 (713)
85 KOG0994 Extracellular matrix g 95.7 9.2 0.0002 48.4 50.2 24 599-622 1722-1745(1758)
86 PF05622 HOOK: HOOK protein; 95.5 0.0035 7.7E-08 76.2 0.0 38 185-222 185-222 (713)
87 KOG1029 Endocytic adaptor prot 95.4 9.2 0.0002 46.6 37.7 83 244-334 435-517 (1118)
88 PRK10698 phage shock protein P 95.3 4.8 0.00011 42.5 23.5 126 212-344 11-140 (222)
89 PF12718 Tropomyosin_1: Tropom 95.3 2.5 5.3E-05 41.8 18.8 86 179-272 21-106 (143)
90 PF05010 TACC: Transforming ac 95.0 5.4 0.00012 41.9 27.6 46 291-343 149-194 (207)
91 TIGR02977 phageshock_pspA phag 95.0 5.6 0.00012 41.7 23.3 108 236-343 28-139 (219)
92 COG1340 Uncharacterized archae 94.8 7.9 0.00017 42.6 35.4 43 303-345 207-249 (294)
93 PF04012 PspA_IM30: PspA/IM30 94.7 6.2 0.00014 41.1 23.4 126 212-344 10-139 (221)
94 COG0419 SbcC ATPase involved i 94.7 17 0.00037 45.9 70.6 13 656-668 819-831 (908)
95 PF14662 CCDC155: Coiled-coil 94.3 7.5 0.00016 40.2 26.7 39 185-223 21-59 (193)
96 COG4942 Membrane-bound metallo 94.1 14 0.0003 42.6 30.9 51 481-531 198-248 (420)
97 PF09789 DUF2353: Uncharacteri 94.0 13 0.00027 41.6 23.2 133 306-448 68-224 (319)
98 PF15619 Lebercilin: Ciliary p 93.9 9.1 0.0002 39.8 24.5 173 318-535 13-185 (194)
99 KOG0980 Actin-binding protein 93.9 22 0.00048 44.1 35.1 52 174-225 440-491 (980)
100 PF09730 BicD: Microtubule-ass 93.5 24 0.00053 43.4 45.0 48 99-146 32-79 (717)
101 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.5 7.7 0.00017 37.6 18.7 46 180-225 4-49 (132)
102 KOG0995 Centromere-associated 93.4 21 0.00047 42.4 44.1 41 236-276 284-324 (581)
103 PF08317 Spc7: Spc7 kinetochor 93.2 7.8 0.00017 43.1 19.6 16 95-110 76-91 (325)
104 PF04849 HAP1_N: HAP1 N-termin 93.1 17 0.00037 40.3 25.8 84 303-397 213-299 (306)
105 COG1340 Uncharacterized archae 92.9 18 0.00038 39.9 31.2 29 381-409 221-249 (294)
106 COG4942 Membrane-bound metallo 92.8 23 0.0005 40.9 32.5 69 101-173 38-106 (420)
107 KOG0980 Actin-binding protein 92.7 33 0.00071 42.7 31.6 48 296-343 466-513 (980)
108 PF09304 Cortex-I_coil: Cortex 92.7 4.1 8.9E-05 38.3 13.7 74 180-257 31-104 (107)
109 PF09730 BicD: Microtubule-ass 92.7 32 0.0007 42.4 43.6 116 117-262 36-151 (717)
110 TIGR03007 pepcterm_ChnLen poly 92.1 17 0.00038 42.3 21.4 39 178-216 253-291 (498)
111 TIGR01005 eps_transp_fam exopo 91.9 36 0.00078 42.1 24.7 36 110-145 189-224 (754)
112 PF00769 ERM: Ezrin/radixin/mo 91.7 21 0.00046 38.3 21.1 36 695-730 184-219 (246)
113 PF12325 TMF_TATA_bd: TATA ele 91.7 8.2 0.00018 37.2 14.9 97 177-284 21-117 (120)
114 PF05667 DUF812: Protein of un 91.4 40 0.00087 40.8 35.1 62 93-155 327-388 (594)
115 PF08317 Spc7: Spc7 kinetochor 91.4 27 0.0006 38.8 26.8 40 185-224 162-201 (325)
116 KOG0933 Structural maintenance 91.3 51 0.0011 41.8 62.5 27 132-158 179-205 (1174)
117 smart00787 Spc7 Spc7 kinetocho 91.2 18 0.00039 40.3 19.2 40 217-262 135-174 (312)
118 COG1842 PspA Phage shock prote 90.9 25 0.00053 37.5 22.5 110 235-344 27-140 (225)
119 KOG0249 LAR-interacting protei 90.8 13 0.00028 45.1 18.2 119 160-287 62-190 (916)
120 TIGR03185 DNA_S_dndD DNA sulfu 90.8 47 0.001 40.5 39.9 43 722-766 588-630 (650)
121 PF10473 CENP-F_leu_zip: Leuci 90.7 19 0.00041 35.7 18.5 41 179-219 24-64 (140)
122 PF13514 AAA_27: AAA domain 90.6 65 0.0014 41.8 71.5 34 191-224 240-273 (1111)
123 PF15619 Lebercilin: Ciliary p 90.6 24 0.00051 36.7 23.9 55 289-343 54-108 (194)
124 PF14915 CCDC144C: CCDC144C pr 90.5 32 0.00069 38.0 38.0 213 265-534 4-227 (305)
125 KOG0964 Structural maintenance 90.4 59 0.0013 41.1 61.1 43 177-219 333-375 (1200)
126 PF13851 GAS: Growth-arrest sp 90.3 25 0.00055 36.6 23.4 35 238-272 92-126 (201)
127 KOG1853 LIS1-interacting prote 90.1 31 0.00067 37.2 21.3 70 171-261 19-88 (333)
128 KOG1003 Actin filament-coating 89.2 30 0.00066 36.0 24.1 70 208-284 61-133 (205)
129 smart00787 Spc7 Spc7 kinetocho 89.1 36 0.00079 37.9 19.3 56 187-246 205-260 (312)
130 TIGR01005 eps_transp_fam exopo 89.0 59 0.0013 40.2 23.1 43 236-278 292-334 (754)
131 KOG4593 Mitotic checkpoint pro 89.0 64 0.0014 39.4 61.7 49 577-625 476-527 (716)
132 PF10473 CENP-F_leu_zip: Leuci 88.7 27 0.00058 34.6 19.2 39 185-223 23-61 (140)
133 PF09304 Cortex-I_coil: Cortex 88.5 22 0.00048 33.6 14.7 68 199-277 8-75 (107)
134 PF05010 TACC: Transforming ac 88.3 37 0.00079 35.8 27.6 21 357-377 144-164 (207)
135 PRK11281 hypothetical protein; 88.1 97 0.0021 40.4 40.7 58 97-155 39-99 (1113)
136 PF11559 ADIP: Afadin- and alp 88.0 25 0.00053 34.6 15.5 99 302-411 51-149 (151)
137 PF15397 DUF4618: Domain of un 87.7 46 0.001 36.2 27.9 142 473-625 79-224 (258)
138 PF08614 ATG16: Autophagy prot 87.2 8.5 0.00018 39.6 12.2 45 237-284 142-186 (194)
139 PF12325 TMF_TATA_bd: TATA ele 86.8 26 0.00057 33.7 14.3 46 514-559 68-116 (120)
140 PRK04778 septation ring format 86.7 80 0.0017 38.0 60.3 73 303-375 140-217 (569)
141 COG5185 HEC1 Protein involved 86.7 71 0.0015 37.4 40.4 85 127-212 269-356 (622)
142 KOG0250 DNA repair protein RAD 86.4 1.1E+02 0.0024 39.3 63.7 23 45-67 151-174 (1074)
143 PF08614 ATG16: Autophagy prot 86.4 9.7 0.00021 39.2 12.1 79 203-285 91-169 (194)
144 PF05667 DUF812: Protein of un 86.1 89 0.0019 37.9 34.2 34 114-147 327-360 (594)
145 PF11559 ADIP: Afadin- and alp 85.9 21 0.00045 35.1 13.7 38 112-149 49-86 (151)
146 PF09755 DUF2046: Uncharacteri 85.7 64 0.0014 35.9 34.3 84 189-275 65-150 (310)
147 PF00769 ERM: Ezrin/radixin/mo 85.5 42 0.00091 36.1 16.8 22 134-155 3-24 (246)
148 PF09728 Taxilin: Myosin-like 85.4 66 0.0014 35.8 37.1 139 120-269 20-165 (309)
149 COG4372 Uncharacterized protei 85.2 76 0.0017 36.3 31.4 37 177-213 142-178 (499)
150 TIGR03007 pepcterm_ChnLen poly 84.7 87 0.0019 36.6 23.2 24 119-142 165-188 (498)
151 PF15066 CAGE1: Cancer-associa 84.7 88 0.0019 36.6 26.4 107 177-287 329-438 (527)
152 KOG0978 E3 ubiquitin ligase in 84.4 1.1E+02 0.0024 37.6 48.4 373 94-507 234-619 (698)
153 PF04012 PspA_IM30: PspA/IM30 84.1 57 0.0012 34.0 20.5 106 177-282 28-134 (221)
154 PF15066 CAGE1: Cancer-associa 84.1 94 0.002 36.4 26.4 115 109-224 318-435 (527)
155 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.6 45 0.00097 32.3 18.5 30 126-155 7-36 (132)
156 PF10498 IFT57: Intra-flagella 83.0 41 0.00088 38.3 16.0 53 178-230 272-324 (359)
157 PF06160 EzrA: Septation ring 82.9 1.2E+02 0.0025 36.6 57.0 107 516-624 315-430 (560)
158 KOG0979 Structural maintenance 82.9 1.5E+02 0.0032 37.9 33.2 97 119-223 640-736 (1072)
159 TIGR03185 DNA_S_dndD DNA sulfu 82.7 1.3E+02 0.0027 36.9 37.7 81 179-259 209-289 (650)
160 KOG0804 Cytoplasmic Zn-finger 82.3 32 0.00069 39.9 14.6 61 95-155 340-401 (493)
161 TIGR01843 type_I_hlyD type I s 82.3 92 0.002 35.0 21.9 28 306-333 199-226 (423)
162 KOG0946 ER-Golgi vesicle-tethe 82.3 1.4E+02 0.0031 37.2 29.2 62 216-277 655-716 (970)
163 PF10481 CENP-F_N: Cenp-F N-te 82.0 64 0.0014 35.3 15.9 30 244-273 160-189 (307)
164 KOG4673 Transcription factor T 81.8 1.4E+02 0.003 36.7 62.7 37 587-623 908-947 (961)
165 PF15290 Syntaphilin: Golgi-lo 81.8 41 0.00089 36.8 14.5 70 514-590 68-138 (305)
166 KOG1003 Actin filament-coating 81.5 73 0.0016 33.3 26.2 122 120-253 9-130 (205)
167 PRK10698 phage shock protein P 80.8 81 0.0018 33.4 21.7 105 177-282 29-135 (222)
168 PF09728 Taxilin: Myosin-like 80.7 1E+02 0.0022 34.4 37.8 54 120-173 62-115 (309)
169 PF13870 DUF4201: Domain of un 80.2 70 0.0015 32.3 23.0 128 241-388 44-173 (177)
170 PF04111 APG6: Autophagy prote 80.1 29 0.00063 38.6 13.4 31 185-215 56-86 (314)
171 COG1842 PspA Phage shock prote 78.5 98 0.0021 33.0 23.3 106 178-283 30-136 (225)
172 PRK11281 hypothetical protein; 78.4 2.3E+02 0.0049 37.2 33.0 25 123-147 81-105 (1113)
173 PF08826 DMPK_coil: DMPK coile 78.3 24 0.00052 30.2 9.2 57 220-280 3-59 (61)
174 PF08172 CASP_C: CASP C termin 77.1 30 0.00066 37.3 12.0 29 684-712 91-119 (248)
175 PF09789 DUF2353: Uncharacteri 76.0 1.4E+02 0.0031 33.5 21.3 43 169-211 69-111 (319)
176 KOG0993 Rab5 GTPase effector R 75.8 1.6E+02 0.0035 34.1 35.5 198 231-454 291-489 (542)
177 COG4372 Uncharacterized protei 75.7 1.6E+02 0.0034 33.9 32.6 24 202-225 125-148 (499)
178 KOG0804 Cytoplasmic Zn-finger 75.6 1.2E+02 0.0026 35.4 16.5 43 236-278 411-453 (493)
179 KOG2129 Uncharacterized conser 74.5 1.7E+02 0.0038 33.8 24.8 33 49-81 40-72 (552)
180 PRK10884 SH3 domain-containing 74.4 41 0.00088 35.4 11.8 21 177-197 91-111 (206)
181 KOG4593 Mitotic checkpoint pro 74.1 2.3E+02 0.0049 35.0 63.2 51 485-535 439-489 (716)
182 KOG4809 Rab6 GTPase-interactin 73.7 2.1E+02 0.0045 34.4 32.8 37 236-272 370-406 (654)
183 KOG0992 Uncharacterized conser 73.2 2E+02 0.0044 34.1 53.9 177 582-763 384-605 (613)
184 TIGR02977 phageshock_pspA phag 73.0 1.3E+02 0.0028 31.6 23.5 51 177-227 29-79 (219)
185 COG4026 Uncharacterized protei 72.6 36 0.00079 36.1 10.7 36 177-212 140-175 (290)
186 PF14915 CCDC144C: CCDC144C pr 72.1 1.7E+02 0.0036 32.6 38.5 99 353-455 116-214 (305)
187 PF10168 Nup88: Nuclear pore c 71.8 2E+02 0.0044 35.8 18.7 18 177-194 637-654 (717)
188 PF06705 SF-assemblin: SF-asse 71.4 1.5E+02 0.0032 31.7 34.5 26 94-119 5-30 (247)
189 TIGR00634 recN DNA repair prot 71.2 2.3E+02 0.0051 33.9 24.8 54 114-173 167-221 (563)
190 PF06005 DUF904: Protein of un 70.4 70 0.0015 28.2 10.5 33 312-344 6-38 (72)
191 PF15035 Rootletin: Ciliary ro 70.0 1.4E+02 0.003 30.8 18.5 89 514-618 88-176 (182)
192 TIGR03017 EpsF chain length de 69.6 2.1E+02 0.0046 32.8 23.4 30 115-144 171-200 (444)
193 TIGR03017 EpsF chain length de 69.1 2.2E+02 0.0047 32.7 22.8 40 236-275 258-297 (444)
194 PRK10884 SH3 domain-containing 68.8 61 0.0013 34.1 11.6 15 96-110 88-102 (206)
195 PF05769 DUF837: Protein of un 68.0 1.5E+02 0.0033 30.5 19.8 42 185-227 9-50 (181)
196 PF10168 Nup88: Nuclear pore c 66.2 3.3E+02 0.0071 34.0 18.8 17 115-131 536-552 (717)
197 PF09787 Golgin_A5: Golgin sub 66.0 2.9E+02 0.0062 32.9 33.1 29 120-148 107-135 (511)
198 PF04111 APG6: Autophagy prote 65.2 1.1E+02 0.0024 34.1 13.4 91 235-340 46-136 (314)
199 PF06008 Laminin_I: Laminin Do 65.2 2E+02 0.0044 30.9 31.1 18 354-371 125-142 (264)
200 PF09738 DUF2051: Double stran 63.7 75 0.0016 35.4 11.6 30 312-341 221-250 (302)
201 COG4026 Uncharacterized protei 62.7 63 0.0014 34.4 10.1 80 243-323 132-211 (290)
202 COG3883 Uncharacterized protei 61.4 2.5E+02 0.0055 30.8 25.5 31 121-151 37-67 (265)
203 PF06005 DUF904: Protein of un 60.9 1.1E+02 0.0023 27.0 9.8 41 185-225 24-64 (72)
204 PF04899 MbeD_MobD: MbeD/MobD 59.8 98 0.0021 27.2 9.3 44 174-217 23-66 (70)
205 PF10481 CENP-F_N: Cenp-F N-te 59.6 2.8E+02 0.006 30.6 19.5 36 120-155 23-58 (307)
206 PF12329 TMF_DNA_bd: TATA elem 59.3 85 0.0018 27.6 9.0 15 128-142 4-18 (74)
207 PF12777 MT: Microtubule-bindi 59.0 45 0.00097 37.5 9.1 77 110-194 237-313 (344)
208 PF14197 Cep57_CLD_2: Centroso 58.8 92 0.002 27.2 9.0 44 235-278 22-65 (69)
209 PF10267 Tmemb_cc2: Predicted 58.3 3E+02 0.0065 31.9 15.5 66 487-552 224-289 (395)
210 PF10498 IFT57: Intra-flagella 57.3 2.5E+02 0.0053 32.1 14.5 25 174-198 215-239 (359)
211 PF07106 TBPIP: Tat binding pr 56.8 1E+02 0.0023 30.8 10.5 24 236-259 113-136 (169)
212 PF10212 TTKRSYEDQ: Predicted 56.8 1.8E+02 0.0038 34.8 13.5 65 166-230 418-492 (518)
213 PF07106 TBPIP: Tat binding pr 55.7 2E+02 0.0043 28.8 12.3 91 467-559 71-165 (169)
214 TIGR02680 conserved hypothetic 55.7 6.6E+02 0.014 33.8 72.3 79 376-454 744-827 (1353)
215 PF15290 Syntaphilin: Golgi-lo 54.2 3.4E+02 0.0074 30.0 14.4 54 132-195 64-117 (305)
216 KOG0249 LAR-interacting protei 53.7 5.4E+02 0.012 32.1 20.9 90 237-337 168-257 (916)
217 PF05600 DUF773: Protein of un 53.1 4.7E+02 0.01 31.3 18.5 25 53-80 352-376 (507)
218 KOG4809 Rab6 GTPase-interactin 52.9 4.9E+02 0.011 31.4 32.9 207 380-616 344-557 (654)
219 PF11180 DUF2968: Protein of u 52.8 2.9E+02 0.0064 28.9 13.4 71 185-255 111-184 (192)
220 PF05335 DUF745: Protein of un 52.7 2.9E+02 0.0063 28.8 16.7 109 178-286 66-177 (188)
221 KOG0982 Centrosomal protein Nu 51.4 4.6E+02 0.01 30.7 21.7 115 110-224 227-349 (502)
222 PF10146 zf-C4H2: Zinc finger- 50.8 3.4E+02 0.0075 29.1 14.2 15 95-109 2-16 (230)
223 PF12777 MT: Microtubule-bindi 50.2 73 0.0016 35.8 9.0 45 181-225 258-302 (344)
224 PF06810 Phage_GP20: Phage min 50.1 1.8E+02 0.004 29.1 10.8 49 177-225 18-69 (155)
225 PF02183 HALZ: Homeobox associ 49.0 40 0.00086 27.1 4.7 42 243-284 2-43 (45)
226 PRK11519 tyrosine kinase; Prov 48.7 4.7E+02 0.01 32.5 16.3 12 59-70 102-113 (719)
227 PF13870 DUF4201: Domain of un 48.5 3E+02 0.0065 27.7 21.4 46 180-225 43-88 (177)
228 COG3883 Uncharacterized protei 48.4 4.1E+02 0.0089 29.2 26.3 35 185-219 51-85 (265)
229 PF04582 Reo_sigmaC: Reovirus 48.3 36 0.00078 38.1 6.0 39 187-225 29-67 (326)
230 COG1382 GimC Prefoldin, chaper 48.0 2.7E+02 0.0058 27.0 12.6 39 248-286 72-110 (119)
231 PF10267 Tmemb_cc2: Predicted 48.0 5E+02 0.011 30.2 15.1 79 115-196 236-315 (395)
232 KOG0993 Rab5 GTPase effector R 47.5 5.2E+02 0.011 30.2 38.4 139 261-399 39-187 (542)
233 PF08826 DMPK_coil: DMPK coile 47.5 1.8E+02 0.0039 24.9 9.0 16 483-498 5-20 (61)
234 PF06818 Fez1: Fez1; InterPro 47.0 3.7E+02 0.0081 28.4 17.8 36 120-155 15-50 (202)
235 KOG1760 Molecular chaperone Pr 46.6 1.6E+02 0.0035 28.7 9.1 80 169-255 24-118 (131)
236 PRK10361 DNA recombination pro 46.4 5.8E+02 0.012 30.4 24.8 25 235-259 136-160 (475)
237 PF04799 Fzo_mitofusin: fzo-li 45.8 1.1E+02 0.0025 31.3 8.6 58 137-195 110-167 (171)
238 TIGR03545 conserved hypothetic 45.3 1.4E+02 0.003 36.0 10.7 36 237-272 253-288 (555)
239 PF04849 HAP1_N: HAP1 N-termin 45.2 4.9E+02 0.011 29.2 31.2 78 120-198 95-186 (306)
240 PRK09841 cryptic autophosphory 45.1 5.2E+02 0.011 32.1 16.0 12 59-70 102-113 (726)
241 PF14988 DUF4515: Domain of un 45.0 3.9E+02 0.0085 28.1 26.7 41 124-164 6-46 (206)
242 COG2433 Uncharacterized conser 44.9 3.1E+02 0.0066 33.5 13.0 73 185-272 435-507 (652)
243 KOG3859 Septins (P-loop GTPase 44.4 2.7E+02 0.0059 31.1 11.6 86 76-167 306-397 (406)
244 PF11172 DUF2959: Protein of u 43.8 4.1E+02 0.009 28.0 21.2 32 357-388 164-195 (201)
245 PRK10361 DNA recombination pro 43.8 6.3E+02 0.014 30.1 24.3 26 580-605 377-402 (475)
246 KOG0999 Microtubule-associated 43.7 6.7E+02 0.015 30.4 55.9 46 327-375 166-213 (772)
247 KOG1962 B-cell receptor-associ 43.5 1.8E+02 0.004 30.9 10.0 33 302-334 178-210 (216)
248 PF11932 DUF3450: Protein of u 43.3 4.4E+02 0.0095 28.1 18.1 40 233-272 50-89 (251)
249 PRK04406 hypothetical protein; 42.4 1.7E+02 0.0038 25.9 8.2 54 470-527 6-59 (75)
250 PF05276 SH3BP5: SH3 domain-bi 41.7 4.8E+02 0.01 28.2 28.0 80 138-217 23-108 (239)
251 COG2433 Uncharacterized conser 41.5 4E+02 0.0087 32.5 13.3 10 55-64 278-287 (652)
252 KOG1853 LIS1-interacting prote 41.1 5.2E+02 0.011 28.3 20.5 33 104-136 15-48 (333)
253 PF15397 DUF4618: Domain of un 40.9 5.2E+02 0.011 28.3 29.9 35 238-272 73-107 (258)
254 TIGR02338 gimC_beta prefoldin, 40.7 3.1E+02 0.0067 25.6 10.3 38 235-272 63-100 (110)
255 COG1730 GIM5 Predicted prefold 39.7 4E+02 0.0087 26.7 13.1 47 357-403 91-137 (145)
256 PF10226 DUF2216: Uncharacteri 39.2 4.8E+02 0.01 27.4 14.1 100 478-589 19-121 (195)
257 PF06008 Laminin_I: Laminin Do 39.1 5.2E+02 0.011 27.8 32.5 48 177-224 85-137 (264)
258 PF06120 Phage_HK97_TLTM: Tail 39.1 6E+02 0.013 28.5 14.3 119 93-222 54-177 (301)
259 PF03915 AIP3: Actin interacti 38.4 7.2E+02 0.016 29.2 16.5 69 316-384 212-281 (424)
260 PRK11546 zraP zinc resistance 38.3 3.3E+02 0.0071 27.2 10.3 62 216-284 52-113 (143)
261 TIGR01010 BexC_CtrB_KpsE polys 37.3 6.3E+02 0.014 28.3 16.5 13 208-220 222-234 (362)
262 PF05266 DUF724: Protein of un 37.1 5E+02 0.011 27.0 14.2 46 180-225 139-184 (190)
263 PF10212 TTKRSYEDQ: Predicted 36.2 8.4E+02 0.018 29.3 15.5 90 120-220 418-507 (518)
264 PF03962 Mnd1: Mnd1 family; I 36.2 4.9E+02 0.011 26.9 11.8 47 233-279 104-154 (188)
265 PRK10929 putative mechanosensi 36.2 1.2E+03 0.025 31.0 42.1 32 98-129 27-59 (1109)
266 PF08581 Tup_N: Tup N-terminal 35.6 3.3E+02 0.0072 24.5 10.3 37 389-425 40-76 (79)
267 PF05278 PEARLI-4: Arabidopsis 35.6 5.4E+02 0.012 28.4 12.3 27 49-75 93-127 (269)
268 PF11932 DUF3450: Protein of u 35.4 5.8E+02 0.013 27.2 16.7 69 203-275 73-146 (251)
269 COG3074 Uncharacterized protei 35.1 3.2E+02 0.007 24.2 9.0 27 318-344 12-38 (79)
270 KOG0962 DNA repair protein RAD 35.0 1.3E+03 0.027 31.0 60.6 50 327-377 791-840 (1294)
271 TIGR01010 BexC_CtrB_KpsE polys 34.8 6.9E+02 0.015 28.0 14.6 29 116-144 171-199 (362)
272 TIGR01069 mutS2 MutS2 family p 34.7 1E+03 0.023 30.0 17.0 10 725-734 735-744 (771)
273 PF04102 SlyX: SlyX; InterPro 34.7 1.8E+02 0.004 25.1 7.1 51 473-527 2-52 (69)
274 PRK02119 hypothetical protein; 34.5 2.6E+02 0.0055 24.7 8.0 53 471-527 5-57 (73)
275 KOG0250 DNA repair protein RAD 34.3 1.2E+03 0.026 30.5 63.7 215 120-343 219-448 (1074)
276 PF05266 DUF724: Protein of un 33.9 5.6E+02 0.012 26.6 13.9 50 120-173 115-164 (190)
277 PRK09841 cryptic autophosphory 33.7 8.6E+02 0.019 30.2 15.4 48 236-287 343-390 (726)
278 PF03962 Mnd1: Mnd1 family; I 33.7 5.5E+02 0.012 26.5 12.2 56 354-409 108-163 (188)
279 PF12795 MscS_porin: Mechanose 33.7 6E+02 0.013 26.9 26.5 49 177-225 83-131 (240)
280 PF14073 Cep57_CLD: Centrosome 33.6 5.6E+02 0.012 26.6 17.9 147 188-342 6-152 (178)
281 PRK11519 tyrosine kinase; Prov 33.6 1E+03 0.022 29.6 16.1 30 115-144 267-296 (719)
282 PF02183 HALZ: Homeobox associ 33.3 1.1E+02 0.0025 24.5 5.1 39 184-222 3-41 (45)
283 PF12808 Mto2_bdg: Micro-tubul 33.0 1.4E+02 0.003 24.9 5.6 49 544-597 2-50 (52)
284 PLN02939 transferase, transfer 32.7 1.2E+03 0.027 30.2 28.3 71 515-590 325-397 (977)
285 PRK15422 septal ring assembly 32.2 3.8E+02 0.0083 24.2 9.2 16 208-223 54-69 (79)
286 PF12795 MscS_porin: Mechanose 32.0 6.4E+02 0.014 26.7 23.2 82 179-260 92-178 (240)
287 PRK04325 hypothetical protein; 31.8 2.9E+02 0.0062 24.4 7.9 51 473-527 7-57 (74)
288 PF07139 DUF1387: Protein of u 31.8 7.8E+02 0.017 27.6 16.5 86 586-736 203-288 (302)
289 PF09731 Mitofilin: Mitochondr 31.4 9.8E+02 0.021 28.7 25.2 20 177-196 256-275 (582)
290 KOG1899 LAR transmembrane tyro 31.4 1.1E+03 0.024 29.2 19.3 54 202-259 141-194 (861)
291 PF09738 DUF2051: Double stran 31.3 7.9E+02 0.017 27.5 18.1 47 179-225 77-123 (302)
292 PF06705 SF-assemblin: SF-asse 31.0 6.8E+02 0.015 26.7 32.2 19 137-155 6-24 (247)
293 PF14932 HAUS-augmin3: HAUS au 30.6 6E+02 0.013 27.4 11.8 32 87-118 61-92 (256)
294 PF11180 DUF2968: Protein of u 30.2 6.4E+02 0.014 26.4 11.2 13 51-63 25-37 (192)
295 PRK12704 phosphodiesterase; Pr 30.1 1E+03 0.022 28.5 20.2 10 261-270 155-164 (520)
296 PF07889 DUF1664: Protein of u 30.0 5.4E+02 0.012 25.2 12.2 21 93-113 42-62 (126)
297 PRK15422 septal ring assembly 29.9 4.2E+02 0.0092 24.0 9.2 17 268-284 54-70 (79)
298 PRK00295 hypothetical protein; 29.7 3.6E+02 0.0078 23.4 8.0 50 474-527 4-53 (68)
299 KOG4438 Centromere-associated 29.6 9.8E+02 0.021 28.1 34.7 84 185-272 172-256 (446)
300 PF12709 Kinetocho_Slk19: Cent 29.3 4.6E+02 0.0099 24.2 10.2 24 175-198 45-68 (87)
301 KOG0288 WD40 repeat protein Ti 29.1 9.9E+02 0.021 28.0 15.6 33 243-275 38-70 (459)
302 PF05911 DUF869: Plant protein 28.9 1.3E+03 0.028 29.3 33.8 207 110-342 19-232 (769)
303 PF13166 AAA_13: AAA domain 28.8 1.1E+03 0.025 28.7 24.9 15 722-736 632-646 (712)
304 COG1382 GimC Prefoldin, chaper 28.7 5.5E+02 0.012 24.9 14.0 97 121-225 12-109 (119)
305 PF04871 Uso1_p115_C: Uso1 / p 28.7 5.7E+02 0.012 25.1 12.8 30 182-211 80-109 (136)
306 PF06428 Sec2p: GDP/GTP exchan 28.4 92 0.002 29.2 4.5 36 179-214 15-51 (100)
307 TIGR01000 bacteriocin_acc bact 28.4 9.9E+02 0.021 27.8 25.1 28 306-333 287-314 (457)
308 PF06818 Fez1: Fez1; InterPro 28.4 7.3E+02 0.016 26.2 20.5 40 186-225 10-49 (202)
309 PF10146 zf-C4H2: Zinc finger- 28.1 7.7E+02 0.017 26.4 15.0 17 237-253 65-81 (230)
310 KOG4403 Cell surface glycoprot 28.1 1E+03 0.023 28.0 20.1 32 312-343 349-380 (575)
311 PF00170 bZIP_1: bZIP transcri 27.7 3.7E+02 0.0079 22.5 8.5 45 296-340 19-63 (64)
312 PRK11546 zraP zinc resistance 27.5 2.8E+02 0.0061 27.7 7.8 47 179-225 68-114 (143)
313 PF15254 CCDC14: Coiled-coil d 27.2 1.4E+03 0.03 29.0 24.7 98 235-343 430-527 (861)
314 KOG1937 Uncharacterized conser 27.1 1.1E+03 0.024 27.9 31.0 259 90-382 261-521 (521)
315 PF15035 Rootletin: Ciliary ro 27.1 7.1E+02 0.015 25.7 20.5 105 164-283 60-164 (182)
316 PRK00736 hypothetical protein; 27.0 3.9E+02 0.0084 23.2 7.8 48 476-527 6-53 (68)
317 PRK13729 conjugal transfer pil 27.0 2.7E+02 0.0058 33.0 8.8 22 603-624 99-120 (475)
318 PF04102 SlyX: SlyX; InterPro 26.9 2.8E+02 0.0061 23.9 6.9 43 182-224 7-49 (69)
319 TIGR03319 YmdA_YtgF conserved 26.6 1.2E+03 0.025 28.0 20.1 9 358-366 252-260 (514)
320 smart00502 BBC B-Box C-termina 26.3 5E+02 0.011 23.6 17.9 42 293-334 62-103 (127)
321 PF11570 E2R135: Coiled-coil r 25.9 6.6E+02 0.014 24.9 14.8 91 103-206 3-104 (136)
322 KOG3850 Predicted membrane pro 25.7 1.1E+03 0.024 27.4 14.5 94 509-614 262-366 (455)
323 PF07795 DUF1635: Protein of u 25.6 1.9E+02 0.0042 30.7 6.7 45 442-502 16-60 (214)
324 PRK09343 prefoldin subunit bet 25.5 6E+02 0.013 24.3 13.3 40 233-272 65-104 (121)
325 PF06785 UPF0242: Uncharacteri 25.2 1.1E+03 0.023 27.0 20.1 84 235-318 71-163 (401)
326 PRK02793 phi X174 lysis protei 24.9 4.2E+02 0.0091 23.2 7.7 51 473-527 6-56 (72)
327 KOG1850 Myosin-like coiled-coi 24.7 1.1E+03 0.023 26.9 35.2 294 52-388 21-327 (391)
328 PF02403 Seryl_tRNA_N: Seryl-t 24.6 5.5E+02 0.012 23.5 9.7 14 160-173 49-62 (108)
329 PLN02939 transferase, transfer 24.2 1.7E+03 0.037 29.1 29.9 22 117-138 165-186 (977)
330 COG0497 RecN ATPase involved i 24.0 1.4E+03 0.03 27.9 22.4 18 66-83 185-202 (557)
331 PF06810 Phage_GP20: Phage min 23.9 5.9E+02 0.013 25.5 9.6 69 303-386 13-81 (155)
332 PF15294 Leu_zip: Leucine zipp 23.8 1E+03 0.022 26.4 23.3 128 92-221 28-174 (278)
333 PF09731 Mitofilin: Mitochondr 23.8 1.3E+03 0.028 27.6 24.8 23 92-114 249-271 (582)
334 PF08581 Tup_N: Tup N-terminal 23.8 5.4E+02 0.012 23.1 10.7 13 212-224 51-63 (79)
335 PRK00736 hypothetical protein; 23.7 4.7E+02 0.01 22.7 7.7 39 185-223 11-49 (68)
336 KOG2264 Exostosin EXT1L [Signa 23.7 4.2E+02 0.0091 32.1 9.4 36 233-268 101-136 (907)
337 PF04912 Dynamitin: Dynamitin 23.1 1.2E+03 0.025 26.7 16.8 29 197-225 333-361 (388)
338 PF05791 Bacillus_HBL: Bacillu 23.1 3.5E+02 0.0075 27.7 8.0 72 187-272 104-175 (184)
339 PRK00295 hypothetical protein; 23.0 4.9E+02 0.011 22.5 7.7 26 194-219 20-45 (68)
340 PF10234 Cluap1: Clusterin-ass 22.5 1.1E+03 0.023 26.1 18.8 94 233-334 163-256 (267)
341 PRK00846 hypothetical protein; 22.5 5.6E+02 0.012 23.0 8.0 51 473-527 11-61 (77)
342 PRK03947 prefoldin subunit alp 22.5 7E+02 0.015 24.0 13.0 17 239-255 94-110 (140)
343 KOG4360 Uncharacterized coiled 22.4 1.4E+03 0.031 27.5 18.8 140 100-265 158-301 (596)
344 TIGR01000 bacteriocin_acc bact 22.4 1.3E+03 0.027 26.9 22.1 17 135-151 96-112 (457)
345 KOG2991 Splicing regulator [RN 22.3 1.1E+03 0.023 26.1 21.4 92 99-190 106-202 (330)
346 PF10186 Atg14: UV radiation r 22.1 9.7E+02 0.021 25.5 19.0 37 236-272 67-103 (302)
347 KOG0239 Kinesin (KAR3 subfamil 22.0 1.6E+03 0.034 28.0 18.2 20 324-343 300-319 (670)
348 smart00338 BRLZ basic region l 22.0 3.5E+02 0.0076 22.7 6.5 38 671-708 25-62 (65)
349 KOG4807 F-actin binding protei 21.5 1.3E+03 0.029 26.8 31.1 270 400-730 296-574 (593)
350 PRK02793 phi X174 lysis protei 21.5 5.4E+02 0.012 22.6 7.7 28 192-219 21-48 (72)
351 COG5185 HEC1 Protein involved 21.5 1.4E+03 0.031 27.2 39.2 17 429-445 528-544 (622)
352 PF14282 FlxA: FlxA-like prote 21.3 5.3E+02 0.011 24.1 8.2 21 135-155 18-38 (106)
353 PF05103 DivIVA: DivIVA protei 21.2 81 0.0017 29.8 2.8 33 185-217 38-70 (131)
354 PRK02119 hypothetical protein; 20.8 5.6E+02 0.012 22.5 7.7 7 207-213 37-43 (73)
355 cd00632 Prefoldin_beta Prefold 20.7 6.7E+02 0.015 23.1 11.9 102 90-207 2-105 (105)
356 KOG0982 Centrosomal protein Nu 20.7 1.4E+03 0.031 26.9 24.1 105 174-284 245-349 (502)
357 PF06785 UPF0242: Uncharacteri 20.5 1.3E+03 0.028 26.4 20.1 36 237-272 139-174 (401)
358 PF10805 DUF2730: Protein of u 20.4 4.8E+02 0.01 24.4 7.7 10 185-194 71-80 (106)
359 PRK00409 recombination and DNA 20.3 1.8E+03 0.039 27.9 17.9 32 475-506 502-533 (782)
360 PF10224 DUF2205: Predicted co 20.2 3.7E+02 0.0081 24.3 6.5 44 672-715 23-66 (80)
361 PF07889 DUF1664: Protein of u 20.2 8.2E+02 0.018 23.9 12.7 64 471-534 39-102 (126)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.1e-32 Score=337.33 Aligned_cols=469 Identities=23% Similarity=0.359 Sum_probs=442.8
Q ss_pred hhhHHHHHHHHHHhhhh---hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhh
Q 003810 93 VVDVKELRERIESLSKE---LQEEKETRGA----AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTE 165 (794)
Q Consensus 93 ~~~v~el~eq~e~l~r~---~ek~k~~l~~----~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~e 165 (794)
+++|++|..|++++++. ++++|+.++. +..++.++...+.+.+++++.++.++.+++.++++. .+.+.+
T Consensus 1188 ~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~----~~~~~~ 1263 (1930)
T KOG0161|consen 1188 ADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQ----ERLRND 1263 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 88999999999999998 9999999999 999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 003810 166 LDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLR 245 (794)
Q Consensus 166 l~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~ 245 (794)
+..+.+++ ..|...+..++++.+..++.+++..+++.++|++++.+++++++ .+..+...+++++
T Consensus 1264 l~~q~~~l-----------~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r----~k~~l~~~l~~l~ 1328 (1930)
T KOG0161|consen 1264 LTAKRSRL-----------QNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETR----EKSALENALRQLE 1328 (1930)
T ss_pred HHHHHHHh-----------hhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999 7899999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003810 246 DNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATET 325 (794)
Q Consensus 246 ~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~ 325 (794)
.+++.|++++++..+....|.+.+.++..++.+|+.+++.....+.+.+.+.|++++..++.++..+..++..+..+.++
T Consensus 1329 ~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~ 1408 (1930)
T KOG0161|consen 1329 HELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKA 1408 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987767788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 003810 326 ISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKE---KESWEAASQAFRKKLEIAESNCIHTEI 402 (794)
Q Consensus 326 ~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~---~~e~k~~~~el~~eLe~aE~~~~r~e~ 402 (794)
+.+|+.+++ ++..++++.+.-++.+.+++..| +++|+..++.+..+++.++.+.+.+++
T Consensus 1409 k~~l~~el~------------------d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~t 1470 (1930)
T KOG0161|consen 1409 KNRLQQELE------------------DLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLST 1470 (1930)
T ss_pred HHHHHhHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999 88889999988888888888888 999999999999999999999999999
Q ss_pred HHHHHHhHHHh------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHHHH
Q 003810 403 EAAKLRSQLES------ELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEA 476 (794)
Q Consensus 403 e~~~lk~e~E~------el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~ 476 (794)
+++.++..++. .+.+.++.++.++.+++.+..++++. +|.|.+.++ +.+. ++.+|..+
T Consensus 1471 el~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~----------v~elek~~r-----~le~-e~~elQ~a 1534 (1930)
T KOG0161|consen 1471 ELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKR----------VHELEKEKR-----RLEQ-EKEELQAA 1534 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-----HHHH-HHHHHHHH
Confidence 99999999977 77888888888888898888888888 999999888 6676 88899999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHh---hHHHHHHHHHHHHHH
Q 003810 477 LKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNAN----QQIKSIEIKLDSMN---TKLQVEKEAWEKNLQ 549 (794)
Q Consensus 477 l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r----~qir~lE~~l~~~~---~~~~~~kk~~e~~L~ 549 (794)
+.|+++.++++.....+++.+++++..+++++|+.+..++++.+ ..|++++..+++.. +.+.+.|++++++++
T Consensus 1535 LeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~ 1614 (1930)
T KOG0161|consen 1535 LEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDIN 1614 (1930)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchH
Confidence 99999999999999999999999999999999999999999998 56888888888776 778888999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhc
Q 003810 550 TVEESWRLRCELLKAQKEES--SGQDVQKELQELKLQYKRLKDEHDSFRDLADRMM---EEKDNEISRLLDDNKNLHRSL 624 (794)
Q Consensus 550 ~le~~~r~~~e~le~~~e~a--a~~e~~kel~elq~~~~~L~~E~e~~r~~~~~~l---~eke~el~kL~~e~~~l~~~L 624 (794)
+++ .++++| ..++++|+++.++.++++|+.+.++.+....++. ...++++..|++++..|+..+
T Consensus 1615 elE-----------~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l 1683 (1930)
T KOG0161|consen 1615 ELE-----------IQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKL 1683 (1930)
T ss_pred HHH-----------HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 888888 7899999999999999999999999988888777 899999999999999999887
Q ss_pred C
Q 003810 625 E 625 (794)
Q Consensus 625 ~ 625 (794)
.
T Consensus 1684 ~ 1684 (1930)
T KOG0161|consen 1684 E 1684 (1930)
T ss_pred H
Confidence 5
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=5.9e-36 Score=360.75 Aligned_cols=472 Identities=24% Similarity=0.362 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhh---hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 003810 90 SREVVDVKELRERIESLSKE---LQEEKETRGA----AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDK 162 (794)
Q Consensus 90 ~~~~~~v~el~eq~e~l~r~---~ek~k~~l~~----~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~ 162 (794)
..-+++|.+|++|||+++|. ++|+|+.|.. +...|+.++.++.++++.++.++.+|.+++.++++. ++.
T Consensus 127 kkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~----er~ 202 (859)
T PF01576_consen 127 KKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEES----ERQ 202 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH----HHH
Confidence 34489999999999999999 9999999999 999999999999999999999999999999999999 999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 003810 163 YTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANN 242 (794)
Q Consensus 163 ~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~r 242 (794)
+.++.....+| +.|+++|..+|++.+..+..+++..++|.++|.+++.+++++++ .+..|...++
T Consensus 203 ~~el~~~k~kL-----------~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr----~k~~L~~~l~ 267 (859)
T PF01576_consen 203 RNELTEQKAKL-----------QSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETR----AKQALEKQLR 267 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh----hhhhhHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999 7799999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003810 243 KLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKA 322 (794)
Q Consensus 243 kL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl 322 (794)
.+.++++.|++++++...+...|+.++..++.++..|++.+......+...+.+.|+++...+..++..+.++...+.++
T Consensus 268 ~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~L 347 (859)
T PF01576_consen 268 QLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSL 347 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999977767778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhh
Q 003810 323 TETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKE---KESWEAASQAFRKKLEIAESNCIH 399 (794)
Q Consensus 323 ~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~---~~e~k~~~~el~~eLe~aE~~~~r 399 (794)
.+++.+|+.+++ |+...+++++..+..+.+++.+| +.+|+..++.+...++.++.+++.
T Consensus 348 eK~k~rL~~Ele------------------Dl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~ 409 (859)
T PF01576_consen 348 EKTKKRLQGELE------------------DLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARE 409 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999 88899999999999999998888 899999999999999999999999
Q ss_pred hHHHHHHHHhHHHh------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHH
Q 003810 400 TEIEAAKLRSQLES------ELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRAL 473 (794)
Q Consensus 400 ~e~e~~~lk~e~E~------el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~L 473 (794)
++++++.++.+++. .+.+.++.+..++.+++...+++++. +|.|.+.|+ .++. .+.+|
T Consensus 410 ~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~----------v~eLek~kr-----~LE~-e~~El 473 (859)
T PF01576_consen 410 LETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKS----------VHELEKAKR-----RLEQ-EKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccc----------hHHHHHHHH-----HHHH-HHHHH
Confidence 99999999999977 78888999999999999999999998 899999888 7777 67889
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHh---hHHHHHHHHHHH
Q 003810 474 EEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNAN----QQIKSIEIKLDSMN---TKLQVEKEAWEK 546 (794)
Q Consensus 474 e~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r----~qir~lE~~l~~~~---~~~~~~kk~~e~ 546 (794)
..++.|+++.+..+...+.|++.+++++..+|+|+|.+++.++++++ .+|++|+..|+... +.+...|++|+.
T Consensus 474 ~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~ 553 (859)
T PF01576_consen 474 QEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLES 553 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 78999999998776 677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 003810 547 NLQTVEESWRLRCELLKAQKEES--SGQDVQKELQELKLQYKRLKDEHDSFRDLADRMM---EEKDNEISRLLDDNKNLH 621 (794)
Q Consensus 547 ~L~~le~~~r~~~e~le~~~e~a--a~~e~~kel~elq~~~~~L~~E~e~~r~~~~~~l---~eke~el~kL~~e~~~l~ 621 (794)
+|.+++ .+++++ +..++.+.+..++.+|++|+.+++..+.....+. ...++++..|.+++..++
T Consensus 554 ~l~eLe-----------~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~ 622 (859)
T PF01576_consen 554 DLNELE-----------IQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELR 622 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-----------HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 777777 7789999999999999999999999887777766 678999999999999999
Q ss_pred hhcC
Q 003810 622 RSLE 625 (794)
Q Consensus 622 ~~L~ 625 (794)
..+.
T Consensus 623 ~~~~ 626 (859)
T PF01576_consen 623 EALE 626 (859)
T ss_dssp ----
T ss_pred HHHH
Confidence 8774
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.96 E-value=3e-23 Score=260.14 Aligned_cols=390 Identities=23% Similarity=0.316 Sum_probs=328.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPK 258 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~ 258 (794)
-.+++++.|++.|.+++++..+.+..+.+.++.+++++.+|+.++++.... ..+.+++.+++|...+..+.+.++..
T Consensus 1322 ~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~---~~eelee~kk~l~~~lq~~qe~~e~~ 1398 (1930)
T KOG0161|consen 1322 NALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQ---RLEELEELKKKLQQRLQELEEQIEAA 1398 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456666999999999999999999999999999999999999999976542 13789999999999999999998888
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHH
Q 003810 259 ED-------ALEALQLSLQEKDQMLEDMRTLLQAAEEKRQA----SIAELSAKH---QKNLESLEAQLADAVSDRSKATE 324 (794)
Q Consensus 259 e~-------a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~----~L~E~K~k~---q~e~E~LEa~~~E~~~~~~kl~~ 324 (794)
+. ...+|++++.++..++.+.+.. .+.+++++. .+++||.++ +.+++..+..++.+++..+++..
T Consensus 1399 ~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~-~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~ 1477 (1930)
T KOG0161|consen 1399 NAKNASLEKAKNRLQQELEDLQLDLERSRAA-VAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKN 1477 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 76 4488899999999998884444 456777776 899999998 69999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHH------HhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003810 325 TISSLQVLVAEKETTIAEME------AASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCI 398 (794)
Q Consensus 325 ~~~rLqeeLeelerEnK~L~------~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe~aE~~~~ 398 (794)
++..+...++++.++|+.|. +.+.+++| +++ |++++..+.++..+.+++++++++++.|+..++..+
T Consensus 1478 ~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~---k~v----~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~l 1550 (1930)
T KOG0161|consen 1478 ALEELLEQLEELRRENKNLSQEIEDLEEQKDEGG---KRV----HELEKEKRRLEQEKEELQAALEELEAALEAEEDKKL 1550 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 99999999999999999993 55666665 677 999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHhhhhhHHhhhchHHHHHHHHHHH
Q 003810 399 HTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSS-YKIRAHALLQKKDAELVAANDTEQLRALEEAL 477 (794)
Q Consensus 399 r~e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~-~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~l 477 (794)
++++++.++|.++++.+....+.+...+.++ +..+.+++.+|++ .+.|..++..+|+ |++++
T Consensus 1551 r~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~---~~~i~~~q~~Le~E~r~k~e~~r~KKk--------------le~di 1613 (1930)
T KOG0161|consen 1551 RLQLELQQLRSEIERRLQEKDEEIEELRKNL---QRQLESLQAELEAETRSKSEALRSKKK--------------LEGDI 1613 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHhhhhh--------------hhcch
Confidence 9999999999999999999999999999999 9999999999999 9999999999999 99999
Q ss_pred HHHHHHhhhhHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003810 478 KETEKEMSLVSAEKDKALQEL---QEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEES 554 (794)
Q Consensus 478 ~E~E~~l~~a~~er~ra~~el---q~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~~ 554 (794)
++++..+++|+..+..+++++ |.+++++++++++..+..++++.+++.+++++..+.++. ..+...+..++..
T Consensus 1614 ~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~----eeL~~~l~~~~Ra 1689 (1930)
T KOG0161|consen 1614 NELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAEL----EELREKLEALERA 1689 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 999999999999999999999 889999999999999999999999999999999999744 3333344444422
Q ss_pred HH---HHHHHHHHHhhhc--cchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003810 555 WR---LRCELLKAQKEES--SGQDVQKELQELKLQYKRLKDEHDSFRDLAD 600 (794)
Q Consensus 555 ~r---~~~e~le~~~e~a--a~~e~~kel~elq~~~~~L~~E~e~~r~~~~ 600 (794)
-| .++.++...+... ++.-+...-+++-..|..|+.+++..-..+.
T Consensus 1690 rr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~ 1740 (1930)
T KOG0161|consen 1690 RRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELR 1740 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222222222221 2233344445666667667766665554443
No 4
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.93 E-value=1.7e-27 Score=287.71 Aligned_cols=406 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHh-hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKA-MDIERQQLRSANNKLRDNIEELCRSF 255 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~-~e~~re~Le~~~rkL~~e~eeLke~l 255 (794)
+..++++++.+++.|..++++....+..+.++++.++++|.+||++++..... + ..|+...++|...+.++.+.+
T Consensus 262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~----EelEeaKKkL~~~L~el~e~l 337 (859)
T PF01576_consen 262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRT----EELEEAKKKLERKLQELQEQL 337 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999976653 3 578889999999999999988
Q ss_pred chHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHH---HHHHHHHHHHHHHHHHhHHH
Q 003810 256 QPKED-------ALEALQLSLQEKDQMLEDMRTLLQAAEEKRQA----SIAELSAKH---QKNLESLEAQLADAVSDRSK 321 (794)
Q Consensus 256 ee~e~-------a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~----~L~E~K~k~---q~e~E~LEa~~~E~~~~~~k 321 (794)
+.... .+.+|+.++.++.++|...+... ..++++++ .+++|+.++ +..++.++..++.+.+.+++
T Consensus 338 e~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~-~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~ 416 (859)
T PF01576_consen 338 EEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA-AELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFK 416 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88887 44889999999999998854444 45668876 789999997 58999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH------HhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 322 ATETISSLQVLVAEKETTIAEME------AASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAES 395 (794)
Q Consensus 322 l~~~~~rLqeeLeelerEnK~L~------~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe~aE~ 395 (794)
+...+..+...++.++++|+.|. +.+.+++| .++ |++.+.++.++..+.+++.+++++++.|...|.
T Consensus 417 Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~---k~v----~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~ 489 (859)
T PF01576_consen 417 LKNELEELQEQLEELERENKQLQDELEDLTSQLDDAG---KSV----HELEKAKRRLEQEKEELQEQLEEAEDALEAEEQ 489 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc---cch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999993 55666666 677 999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHhhhhhHHhhhchHHHHHHHH
Q 003810 396 NCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSS-YKIRAHALLQKKDAELVAANDTEQLRALE 474 (794)
Q Consensus 396 ~~~r~e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~-~K~RahaLlk~K~~~l~aa~E~e~~r~Le 474 (794)
.++|+++++.++|.++++.|..+...+...++++ +..++.|+.+|+. ++.|+.++..+|+ |+
T Consensus 490 ~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~---qr~l~~le~~LE~E~k~r~~~~r~kkK--------------LE 552 (859)
T PF01576_consen 490 KKLRLQVELQQLRQEIERELQEKEEEFEETRRNH---QRQLESLEAELEEERKERAEALREKKK--------------LE 552 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh---HHHHHHHHhHHHHHHHHHHHHHHHHHH--------------HH
Confidence 9999999999999999999999999999999999 9999999999999 9999999999999 99
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HHHH
Q 003810 475 EALKETEKEMSLVSAEKDKALQEL---QEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKL----------QVEK 541 (794)
Q Consensus 475 ~~l~E~E~~l~~a~~er~ra~~el---q~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~----------~~~k 541 (794)
.++++++.+|++++.....+.+.+ +.+++++++.|++.....+++..++..+++++..+.+++ ...+
T Consensus 553 ~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~r 632 (859)
T PF01576_consen 553 SDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERAR 632 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 889999999999999999999999988888887777532 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 542 EAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLH 621 (794)
Q Consensus 542 k~~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~E~e~~r~~~~~~l~eke~el~kL~~e~~~l~ 621 (794)
+.++.++.++. .++..+.. ....+..+.+.+...|..|+.+++.....+. ..+-++.++......++
T Consensus 633 k~aE~el~e~~----~~~~~l~~-----~~~~l~~~kr~le~~i~~l~~eleE~~~~~~----~~~ek~kka~~~~~~l~ 699 (859)
T PF01576_consen 633 KQAESELDELQ----ERLNELTS-----QNSSLSEEKRKLEAEIQQLEEELEEEQSEAE----AAEEKAKKAQAQAAQLA 699 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH----HHHHHHHh-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHhHHHHHH
Confidence 33333333333 12222221 3344455666777777777777776654433 33334444444444455
Q ss_pred hhc
Q 003810 622 RSL 624 (794)
Q Consensus 622 ~~L 624 (794)
..|
T Consensus 700 ~eL 702 (859)
T PF01576_consen 700 EEL 702 (859)
T ss_dssp ---
T ss_pred HHH
Confidence 444
No 5
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=99.40 E-value=2.1e-13 Score=107.82 Aligned_cols=43 Identities=51% Similarity=0.730 Sum_probs=39.9
Q ss_pred CCchhHHHHHHHHhhhcCcc--ccchHHHHHhhCCCHHHHHHHHH
Q 003810 720 GVDMTYLKNVILKLLETGEV--EALLPVIAMLLQFSPEEMQKCQR 762 (794)
Q Consensus 720 ~~n~eYLKNV~l~fl~~~e~--~~llpvi~tlL~fsp~e~~~~~~ 762 (794)
++|++||||||++||++++. .+|+|||+|+|+|||+|.++|..
T Consensus 1 ~~n~eYLKNVll~fl~~~e~~r~~ll~vi~tlL~fs~~e~~~~~~ 45 (46)
T smart00755 1 EANFEYLKNVLLQFLTLRESERETLLKVISTVLQLSPEEMQKLLE 45 (46)
T ss_pred CccHHHHHHHHHHHhccCcchHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 57999999999999999775 89999999999999999999875
No 6
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=99.40 E-value=1.7e-13 Score=108.65 Aligned_cols=43 Identities=63% Similarity=0.960 Sum_probs=36.6
Q ss_pred cCCchhHHHHHHHHhhhcCc---cccchHHHHHhhCCCHHHHHHHH
Q 003810 719 EGVDMTYLKNVILKLLETGE---VEALLPVIAMLLQFSPEEMQKCQ 761 (794)
Q Consensus 719 e~~n~eYLKNV~l~fl~~~e---~~~llpvi~tlL~fsp~e~~~~~ 761 (794)
+++|++||||||++||++++ +.+|+|||+|||+|||+|.+.|+
T Consensus 1 e~~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~i~ 46 (46)
T PF01465_consen 1 EGINLEYLKNVLLQFLESREPSEREQLLPVIATLLKFSPEEKQKIL 46 (46)
T ss_dssp --HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--HHHHHHHH
T ss_pred CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHhhC
Confidence 36899999999999999987 68999999999999999999874
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=99.39 E-value=4e-06 Score=103.26 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhh
Q 003810 422 LSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKK 457 (794)
Q Consensus 422 l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K 457 (794)
+..........+.++..++..+..|..++..+....
T Consensus 532 le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~ 567 (880)
T PRK02224 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA 567 (880)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333444446666666666655554444444433
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.33 E-value=2e-05 Score=100.38 Aligned_cols=537 Identities=20% Similarity=0.238 Sum_probs=291.7
Q ss_pred hHHHHHHHHHhhhhhHHHHHhhhhcccCCCCCcchhhhhhhhHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHH
Q 003810 54 NEQLLGLVMELKLQNEFLKSQFEGLNTLRPEDDGQESREVVDVKELRERIESLSKELQEE---KETRGAAEKALEHLRVQ 130 (794)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~el~eq~e~l~r~~ek~---k~~l~~~~~~l~~l~~~ 130 (794)
-+.|..-|-+|.-.=.+.+.++.++.+- ..+....-.++.|...+++- +..|....+.+..++..
T Consensus 867 ~~~le~k~~eL~k~l~~~~~~~~~l~~~------------~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~ 934 (1822)
T KOG4674|consen 867 IAKLEIKLSELEKRLKSAKTQLLNLDSK------------SSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEE 934 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcccc------------chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555666666555520 33444455555566664444 67778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHH
Q 003810 131 YEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRL----RDVGETAERAS 206 (794)
Q Consensus 131 ~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~l----eE~e~~~~~ls 206 (794)
+.-.+..+..+...+.++...+...|+++..+++.+..++..| ..++..|...+ ...+.+...+.
T Consensus 935 ~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L-----------~~~~~~l~~e~~~~~k~~e~~~~~~~ 1003 (1822)
T KOG4674|consen 935 YSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSEL-----------EKEIENLREELELSTKGKEDKLLDLS 1003 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhccccchhhhHHHHH
Confidence 9999999999999999999889999999998888888888888 45554444333 33566777899
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH---HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 207 SQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDN---IEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLL 283 (794)
Q Consensus 207 k~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e---~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~l 283 (794)
+.+++++.++........+....+...+..+......++.. ++.=.-.+......+..|..+.+++.-++..++...
T Consensus 1004 ~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1004 REISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999888888877765655555555554444333 333333344455566777777777776666666555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHH--HHHhhcchhHHHHhhHHHH
Q 003810 284 QAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAE--MEAASTGKEARFKAAVETV 361 (794)
Q Consensus 284 q~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~--L~~~s~~~~~~l~~~~E~~ 361 (794)
. ++...+.+..+.-......|+.++..+...+..+.....-|...++.+-.-... +.+...| -.++..-|=.+
T Consensus 1084 ~----~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g-~sdL~~iv~~L 1158 (1822)
T KOG4674|consen 1084 E----SRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG-LSDLQNIVSFL 1158 (1822)
T ss_pred H----HHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc-hHHHHHHHHHH
Confidence 5 223333333333334444444444444444444444444444444433332221 1111111 00111111111
Q ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hhHHHH--------------
Q 003810 362 KGELAHLKRE----------HEKEKESWEAASQAFRKKLEIAESNCI-------------HTEIEA-------------- 404 (794)
Q Consensus 362 ~~el~~l~kk----------~ek~~~e~k~~~~el~~eLe~aE~~~~-------------r~e~e~-------------- 404 (794)
+++..-+.-+ +....+.+...++.|.+.|.+.+.... ..-..+
T Consensus 1159 R~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~ 1238 (1822)
T KOG4674|consen 1159 RKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREEN 1238 (1822)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2221111111 111122333333333333333322220 000011
Q ss_pred -------HHHHhHHHh---HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHH
Q 003810 405 -------AKLRSQLES---ELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALE 474 (794)
Q Consensus 405 -------~~lk~e~E~---el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le 474 (794)
..++..++. ++....-.+......+.....++..|+++-+.||.|++.|+.+-+ -.+...++.|.
T Consensus 1239 ~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k-----~~d~~~~~kL~ 1313 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYK-----DSDKNDYEKLK 1313 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCHHHHHHHH
Confidence 111111111 222222222333334555577888999999999999999999954 47777888888
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------
Q 003810 475 EALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNL------ 548 (794)
Q Consensus 475 ~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L------ 548 (794)
..+.-++..+.........+...+......+...++..--....+..++..++.....+.+.+-...+. ..++
T Consensus 1314 ~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q-~~el~~~~~~ 1392 (1822)
T KOG4674|consen 1314 SEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ-ELELSDKKKA 1392 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888778888776666656666666544444444455544444444444444444443333222111111 1111
Q ss_pred -HHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhc
Q 003810 549 -QTVEESWRLRCELLKAQKEES-SGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDN-EISRLLDDNKNLHRSL 624 (794)
Q Consensus 549 -~~le~~~r~~~e~le~~~e~a-a~~e~~kel~elq~~~~~L~~E~e~~r~~~~~~l~eke~-el~kL~~e~~~l~~~L 624 (794)
.......-+..+.+...+..+ .-.-+.++|.+.+..-..++.+++...-..-.+..+.+. ..+.+...+..+...+
T Consensus 1393 ~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~e~~ 1471 (1822)
T KOG4674|consen 1393 HELMQEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLLEEIKKLLETV 1471 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 111222223333333322211 123346666666566666677777776666666666666 6666666666555443
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=3.4e-05 Score=99.13 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh
Q 003810 658 QQILLLARQQAQREEELAQSQRHILALQEELEELERENRLH--SQQEAMLKEEFRNMER 714 (794)
Q Consensus 658 ~~~l~~a~~~a~re~El~~~~~~~~~Le~~~~e~~~~~~~~--~~q~~~Lk~eir~ler 714 (794)
..+-.+...+.....+|..+++.+..+...-+.+..+...+ ..++..++.+|..+..
T Consensus 984 ~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~ 1042 (1311)
T TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLK 1042 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555554444 4455555566665543
No 10
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.27 E-value=4.1e-05 Score=97.66 Aligned_cols=250 Identities=17% Similarity=0.227 Sum_probs=144.5
Q ss_pred HHHHhhhhhHHHHHhhhhcccC-----CCCCcchhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 003810 60 LVMELKLQNEFLKSQFEGLNTL-----RPEDDGQESREVVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEE- 133 (794)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~- 133 (794)
-|.+|--+|-+|.+.+-.+..- ...+..++-.....+.+++++|.+|.+.+.+..+.+..+-.+.+.++.-.++
T Consensus 533 nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~ 612 (1822)
T KOG4674|consen 533 NINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAEL 612 (1822)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3678888999998877443211 1123334444456688888899888888777767666644444444211111
Q ss_pred ---------------------HHHHHHHHHHHHHHH-------HHHHHhhhhhhhhHHhhHHHHHHHHHHH---HHHHHH
Q 003810 134 ---------------------ADAKAQEFSAKLAEA-------QQKLGQEIKGHEDKYTELDSKFTRLHKR---AKQRIQ 182 (794)
Q Consensus 134 ---------------------~e~~~~~l~~ql~e~-------q~kl~ee~~~l~~~~~el~~~~~~lh~~---~kqriq 182 (794)
.++.++.|+..+.-. ...+.+.+..|......+....+++.-. ++.++.
T Consensus 613 e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle 692 (1822)
T KOG4674|consen 613 EDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLE 692 (1822)
T ss_pred cccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 366677777666533 3346677777777777777777777433 999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 003810 183 EVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDAL 262 (794)
Q Consensus 183 eLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~ 262 (794)
.|...++.+.+....+.+....+...++...+-++.+...|--... .-..+...+..|..+..-++..-.-+...+
T Consensus 693 ~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~----k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 693 NLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANE----KLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888777777777766655544444433332111 112333344444444444443333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 263 EALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVS 317 (794)
Q Consensus 263 ~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~ 317 (794)
..|..+...++..+.+++.... ......++.+.++...+..|...++.+..
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~----~~e~s~~~~k~~~e~~i~eL~~el~~lk~ 819 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKN----ELEESEMATKDKCESRIKELERELQKLKK 819 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333222 22223345556666666666666655554
No 11
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.23 E-value=9e-06 Score=98.03 Aligned_cols=190 Identities=17% Similarity=0.255 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003810 422 LSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQEA 501 (794)
Q Consensus 422 l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~l~E~E~~l~~a~~er~ra~~elq~~ 501 (794)
++.+...+..++..+.-+...+.+|+.++..|--.=. +++. ...-|..++..+..+|+.++..-.... .+
T Consensus 296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~-----~ke~-~~~~Lqsdve~Lr~rle~k~~~l~kk~----~~ 365 (775)
T PF10174_consen 296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR-----AKEQ-EAEMLQSDVEALRFRLEEKNSQLEKKQ----AQ 365 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHH----HH
Confidence 3334444555555555555555555555554432222 2222 223355555555555554444444433 34
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 003810 502 LANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQEL 581 (794)
Q Consensus 502 ~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~el 581 (794)
+..++.++.....++.+++..++-.++++..+.. ..+.++..|.+-...+....++|.++.+++..+.+.-.+.+.
T Consensus 366 ~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~----kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea 441 (775)
T PF10174_consen 366 IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQK----KIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEA 441 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 4445555666666777777766666666666654 344555555555555666667777655555555566666666
Q ss_pred HHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhcC
Q 003810 582 KLQYKRLKDEHDSFRDLAD----RMMEEKDNEISRLLDDNKNLHRSLE 625 (794)
Q Consensus 582 q~~~~~L~~E~e~~r~~~~----~~l~eke~el~kL~~e~~~l~~~L~ 625 (794)
.....++...++.+|.+.. +-++-..+++..++..+..|+..|.
T Consensus 442 ~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs 489 (775)
T PF10174_consen 442 LREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELS 489 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6666666666666655544 3336667777777777777777764
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.21 E-value=6.1e-05 Score=94.55 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 681 ILALQEELEELERENRLHSQQEAMLKEEFRNM 712 (794)
Q Consensus 681 ~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir~l 712 (794)
...|.....++......+...+..+...++.+
T Consensus 995 ~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~ 1026 (1179)
T TIGR02168 995 YEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444454455444443
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.04 E-value=0.00021 Score=86.54 Aligned_cols=311 Identities=19% Similarity=0.266 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHH
Q 003810 307 SLEAQLADAVSDRSKATETISSLQVLVAEKE-----------TTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKE 375 (794)
Q Consensus 307 ~LEa~~~E~~~~~~kl~~~~~rLqeeLeele-----------rEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~ 375 (794)
+++.-+..+.++...+.+.+..|+.+|.-+. +..|.|.+--+... .+-..+|.+..++.+-+-.+..+
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~-~mK~k~d~~~~eL~rk~~E~~~~ 306 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSL-AMKSKMDRLKLELSRKKSELEAL 306 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544432 22233321111111 12224666666666555333333
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHH-------HHHHHH
Q 003810 376 ----------KESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAA-------KQEIIH 438 (794)
Q Consensus 376 ----------~~e~k~~~~el~~eLe~aE~~~~r~e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~-------q~e~~~ 438 (794)
-.+++.=++-++..|.+.+..+-.+.+++.+++..+++ .+.++......+..+ +.++..
T Consensus 307 qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~----k~~~l~kk~~~~~~~qeE~~~~~~Ei~~ 382 (775)
T PF10174_consen 307 QTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEE----KNSQLEKKQAQIEKLQEEKSRLQGEIED 382 (775)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23446667777777777788888888888887776555 333333333333333 333333
Q ss_pred HHHHHhHhHHHHHHHHhhhhhHHh---hhchHHHHHHHHHHH---------HHHHHHhhhhHHHHHHHHHHHHHHH----
Q 003810 439 LEREFSSYKIRAHALLQKKDAELV---AANDTEQLRALEEAL---------KETEKEMSLVSAEKDKALQELQEAL---- 502 (794)
Q Consensus 439 le~Ele~~K~RahaLlk~K~~~l~---aa~E~e~~r~Le~~l---------~E~E~~l~~a~~er~ra~~elq~~~---- 502 (794)
+...++.+..++-.|..+-. .|. .-++. ++..+..-+ ..+-..|+.++.+++++...+..+.
T Consensus 383 l~d~~d~~e~ki~~Lq~kie-~Lee~l~ekd~-ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e 460 (775)
T PF10174_consen 383 LRDMLDKKERKINVLQKKIE-NLEEQLREKDR-QLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAE 460 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43334333333333322210 000 00000 111111111 1333566677778888777774442
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----------HHHHHHHHH---HHHHHHHHHHHHHhhhc
Q 003810 503 ANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEA----------WEKNLQTVE---ESWRLRCELLKAQKEES 569 (794)
Q Consensus 503 ~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~----------~e~~L~~le---~~~r~~~e~le~~~e~a 569 (794)
.....+++....++.+++..+..|+..+......+...+.. -..+|..++ +..+.+|..|..++..+
T Consensus 461 ~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~ 540 (775)
T PF10174_consen 461 KERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKL 540 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 23334556666666677777777777766555222111111 112232222 23467777787777663
Q ss_pred -cchhHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhc
Q 003810 570 -SGQDVQKELQELKLQYKRLKDEHDSFRDLAD---RMMEEKDNEISRLLDDNKNLHRSL 624 (794)
Q Consensus 570 -a~~e~~kel~elq~~~~~L~~E~e~~r~~~~---~~l~eke~el~kL~~e~~~l~~~L 624 (794)
+..++...+..+...+..+..+..+.+...+ .++.+.+.+-..+...+..|...|
T Consensus 541 ~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeL 599 (775)
T PF10174_consen 541 RANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKEL 599 (775)
T ss_pred HhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334455555666666666666666664433 444566666666666666666665
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=99.03 E-value=0.00028 Score=87.06 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 307 SLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 307 ~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
.+...+.++......+...+..++..+..+...+..|
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL 424 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555444444444
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=98.98 E-value=0.00042 Score=85.48 Aligned_cols=12 Identities=25% Similarity=0.003 Sum_probs=6.9
Q ss_pred hhCCCHHHHHHH
Q 003810 749 LLQFSPEEMQKC 760 (794)
Q Consensus 749 lL~fsp~e~~~~ 760 (794)
+-.||+.+...+
T Consensus 786 ~~~lS~G~~~~~ 797 (880)
T PRK03918 786 LTFLSGGERIAL 797 (880)
T ss_pred hhhCCHhHHHHH
Confidence 345677776643
No 16
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.98 E-value=0.00061 Score=87.14 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=22.9
Q ss_pred cCCCCCCCchHHHHHHHHHhhhhhHHHHHhhhh
Q 003810 45 DEHGSSNDNNEQLLGLVMELKLQNEFLKSQFEG 77 (794)
Q Consensus 45 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (794)
.+.+++=..-+-|+..|+.=++-=+|+|+-|-.
T Consensus 174 ~~s~~~~~hI~kli~~vln~~~~~d~iK~mIi~ 206 (1201)
T PF12128_consen 174 CESSHQYQHIEKLINAVLNKKLDFDFIKNMIIA 206 (1201)
T ss_pred CCCcccccChHHHHHHHHhccccHHHHHHHHHH
Confidence 334444556677888888777778888887744
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=0.0011 Score=85.74 Aligned_cols=300 Identities=14% Similarity=0.170 Sum_probs=144.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHH
Q 003810 102 RIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRI 181 (794)
Q Consensus 102 q~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqri 181 (794)
-.+.++.....-...++.+...|.++..-+..+++....+...-. .-..+...+..+..++.++..++.+++ ...+.+
T Consensus 187 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~-kie~~~~~~~~le~ei~~l~~~~~~l~-~~~~~~ 264 (1311)
T TIGR00606 187 ALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEA-QLESSREIVKSYENELDPLKNRLKEIE-HNLSKI 264 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 344444444444555556777788887777666665555543333 233444454555555555555555552 244555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhh----hHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 003810 182 QEVQKEKDDLETRLRDVGETAERASSQ----CSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQP 257 (794)
Q Consensus 182 qeLq~E~~~L~e~leE~e~~~~~lsk~----~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee 257 (794)
+.++..+..+..........+..+... +..--.+|..+...+......+......++.....+..++..++.....
T Consensus 265 ~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~ 344 (1311)
T TIGR00606 265 MKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTE 344 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655444444444433331 1111233444444444433333333333444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003810 258 KEDALEALQLSLQEKDQ-----------------------------MLEDMRTLLQAAEEKRQASIAELSAKHQKNLESL 308 (794)
Q Consensus 258 ~e~a~~~Lq~El~~l~~-----------------------------~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~L 308 (794)
.......|+.+...... ++.++...+...+......+...+..+...+..+
T Consensus 345 l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 424 (1311)
T TIGR00606 345 LLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLK 424 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222222111111 1333334444434333445666666667777777
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH--HhhcchhHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 003810 309 EAQLADAVSDRSKATETISSLQVLVAEKETTIAEME--AASTGKEARFKAAVETVKGELAHLKREHEKE-----KESWEA 381 (794)
Q Consensus 309 Ea~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~--~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~-----~~e~k~ 381 (794)
+..+.++..........+......+......++.+. .+...... ..+..+...+..+...++.. ...|..
T Consensus 425 q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1311)
T TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSS---DRILELDQELRKAERELSKAEKNSLTETLKK 501 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCh---HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 777777777777666666666666666666666663 11111110 13334444555555544443 444555
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHH
Q 003810 382 ASQAFRKKLEIAESNCIHTEIEAAK 406 (794)
Q Consensus 382 ~~~el~~eLe~aE~~~~r~e~e~~~ 406 (794)
.+......+...+...-.+..++..
T Consensus 502 ~i~~~~~~~~~le~~~~~l~~~~~~ 526 (1311)
T TIGR00606 502 EVKSLQNEKADLDRKLRKLDQEMEQ 526 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554554444444444444333
No 18
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.81 E-value=0.0018 Score=81.52 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHhhhhh
Q 003810 93 VVDVKELRERIESLSKEL 110 (794)
Q Consensus 93 ~~~v~el~eq~e~l~r~~ 110 (794)
.+.+.++..++..|.+..
T Consensus 185 ~d~l~el~~ql~~L~~q~ 202 (1179)
T TIGR02168 185 RENLDRLEDILNELERQL 202 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 19
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.74 E-value=0.003 Score=79.80 Aligned_cols=8 Identities=25% Similarity=0.152 Sum_probs=3.2
Q ss_pred CCCHHHHH
Q 003810 751 QFSPEEMQ 758 (794)
Q Consensus 751 ~fsp~e~~ 758 (794)
.||+-+..
T Consensus 1074 ~lSgge~~ 1081 (1164)
T TIGR02169 1074 AMSGGEKS 1081 (1164)
T ss_pred hcCcchHH
Confidence 34444443
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.64 E-value=0.001 Score=72.47 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=60.2
Q ss_pred HHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhH
Q 003810 152 LGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMD 231 (794)
Q Consensus 152 l~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e 231 (794)
+..+|..+...+.++.....++ +.+.+.+...+.+...+..........+..++..+++.+++.+.
T Consensus 52 ye~el~~lr~~id~~~~eka~l-----------~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~--- 117 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARL-----------ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETL--- 117 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hhhHHHHhHHhhhhHHHHhhHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---
Confidence 5555555566666555555555 44445555555555555555566677777777778888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 003810 232 IERQQLRSANNKLRDNIEELCRSFQPKE 259 (794)
Q Consensus 232 ~~re~Le~~~rkL~~e~eeLke~lee~e 259 (794)
.+..|+..+..|.++++-++...+..-
T Consensus 118 -~r~~le~~i~~L~eEl~fl~~~heeEi 144 (312)
T PF00038_consen 118 -ARVDLENQIQSLKEELEFLKQNHEEEI 144 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 567888888888888887777655533
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.64 E-value=0.0012 Score=76.62 Aligned_cols=138 Identities=17% Similarity=0.285 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQK---LGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLR 196 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~k---l~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~le 196 (794)
+...+..|+.++......+..|..+.+++... +..+++.|...+.+ +..||.+|+.++..+.....
T Consensus 169 l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e-----------~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE-----------ARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666655544333 33443344333333 45566666777777776665
Q ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 197 DVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 197 E~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
+.+.....+......+.+.-.+++.++.+.+- ...........+..+.+.|+++|...++.++.-+++...+
T Consensus 238 E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~----~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L 309 (546)
T PF07888_consen 238 EQEKELDKLKELKAELEQLEAELKQRLKETVV----QLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELL 309 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444433322222222233333333222 2222333344445555555555555544443333333333
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.59 E-value=0.0035 Score=73.02 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 003810 473 LEEALKETEKEMSLVSAEKDKALQEL 498 (794)
Q Consensus 473 Le~~l~E~E~~l~~a~~er~ra~~el 498 (794)
|...+..++..+...-.++-++++++
T Consensus 376 L~~el~~~e~~lqEer~E~qkL~~ql 401 (546)
T PF07888_consen 376 LSRELQMLEEHLQEERMERQKLEKQL 401 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444445555566655
No 23
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.58 E-value=0.0042 Score=72.68 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=45.0
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 654 SAAEQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNM 712 (794)
Q Consensus 654 ~~~e~~~l~~a~~~a~re~El~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir~l 712 (794)
+++.+++-||-.-+.+|++||..++-.+..|+..---+-.+.-.+.-++..|++...+.
T Consensus 848 ~~nttt~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~ 906 (961)
T KOG4673|consen 848 TPNTTTSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRV 906 (961)
T ss_pred cCCCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777899999999999999999999888888765555555666666666666665443
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.54 E-value=0.011 Score=75.78 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 518 NANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKA 564 (794)
Q Consensus 518 e~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~~~r~~~e~le~ 564 (794)
.+..++..++..+..+..+...-......++..+...|+.....+..
T Consensus 682 ~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~ 728 (1201)
T PF12128_consen 682 QIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEA 728 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555433333333344444444444444444433
No 25
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.46 E-value=0.017 Score=74.02 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 676 QSQRHILALQEELEELERENRLHSQQEAMLKEEF 709 (794)
Q Consensus 676 ~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~ei 709 (794)
....+...|.....++......+.+.+..++..+
T Consensus 974 ~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196 974 EVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555554444
No 26
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.41 E-value=0.019 Score=72.59 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhhhH
Q 003810 473 LEEALKETEKEMSLVS 488 (794)
Q Consensus 473 Le~~l~E~E~~l~~a~ 488 (794)
+...+..++..+....
T Consensus 679 l~~~l~~l~~~l~~l~ 694 (1164)
T TIGR02169 679 LRERLEGLKRELSSLQ 694 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444443333
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.34 E-value=0.0022 Score=69.90 Aligned_cols=202 Identities=22% Similarity=0.301 Sum_probs=100.5
Q ss_pred HHHHHHhhhhhHHHHHhhhhcccCC-CCCcchhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 58 LGLVMELKLQNEFLKSQFEGLNTLR-PEDDGQESREVVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADA 136 (794)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~ 136 (794)
+.-|--|--+|..|..+|..+.... +..++-...=-..+..|..+|+.+...--+-...+..+..+++.++.-+...-+
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~ 96 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELA 96 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3456677789999999999887542 111111111133455555566555554222222333377777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHH-----HH-H
Q 003810 137 KAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRD----VGETAE-----RA-S 206 (794)
Q Consensus 137 ~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE----~e~~~~-----~l-s 206 (794)
.+..++..+..+...++++ ...+.++..++..| +.|++-+....++ +...+. .. .
T Consensus 97 ~~~~le~el~~lrk~ld~~----~~~r~~le~~i~~L-----------~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~ 161 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEE----TLARVDLENQIQSL-----------KEELEFLKQNHEEEIEELREQIQSSVTVEVDQ 161 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTTSTT-----------
T ss_pred HHHHHHHHHhhhhhhhhhh----hhhHhHHHHHHHHH-----------HHHHHHHHhhhhhhhhhhhhccccccceeecc
Confidence 7777777777777667766 66666666666666 4444444433322 111110 11 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 207 SQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMR 280 (794)
Q Consensus 207 k~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r 280 (794)
-....|..-|.++|..++.... ......-......++.+..........+..+..++..+...+..++
T Consensus 162 ~~~~dL~~~L~eiR~~ye~~~~------~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~ 229 (312)
T PF00038_consen 162 FRSSDLSAALREIRAQYEEIAQ------KNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQ 229 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHHHHh------hhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhh
Confidence 1134466667777777765333 1222222333334444444444444444444444444433333333
No 28
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.32 E-value=0.017 Score=67.97 Aligned_cols=56 Identities=32% Similarity=0.337 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 94 VDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQ 149 (794)
Q Consensus 94 ~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q 149 (794)
..+.+...+|+.+++.+.+-|..+......=-.+-..+..+-+.+..|..+|...+
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~ 82 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQ 82 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777777776655555555666666667777777776444
No 29
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.21 E-value=0.057 Score=69.30 Aligned_cols=53 Identities=34% Similarity=0.429 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHhhHHHHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQK-LGQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~k-l~ee~~~l~~~~~el~~~~~~l 173 (794)
+...|++|......+..-. .+...+..++.. +--.+.++..++..+...++.+
T Consensus 198 l~~~l~~L~~q~~~a~~y~-~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 251 (1163)
T COG1196 198 LEKQLEKLERQAEKAERYQ-ELKAELRELELALLLAKLKELRKELEELEEELSRL 251 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554443322 344444433333 1222333344444444444444
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.17 E-value=0.0042 Score=65.73 Aligned_cols=144 Identities=16% Similarity=0.276 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPK 258 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~ 258 (794)
.++..+....+.....+..++.........+..|..+|..++..+++.-+.. ......+.-+..+++....+++..
T Consensus 64 ~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~----~E~~rkl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 64 EKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKY----EEVERKLKVLEQELERAEERAEAA 139 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444446666666666666666666666667777777777777777655544 455666677788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003810 259 EDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVA 334 (794)
Q Consensus 259 e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLe 334 (794)
+..+..|..++..+...+..+......+. +.-..+...+..|..++.++........+.+..|...|+
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~~~--------~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEKAS--------EREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888555444333333222 222333455555555555555555555555555555555
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.15 E-value=0.012 Score=68.70 Aligned_cols=90 Identities=18% Similarity=0.305 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH-HHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAE-RASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQ 256 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~-~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~le 256 (794)
=+||+.|++++..|.-++..+..... ..+.-..-...++..++..+++-.+ .+..++-.+++|.++++.++..++
T Consensus 55 IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~----~ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 55 IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETAR----ERAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46778889999999999888888777 4466677778888888888887666 557888888888888888888887
Q ss_pred hHHHHHHHHHHHHHH
Q 003810 257 PKEDALEALQLSLQE 271 (794)
Q Consensus 257 e~e~a~~~Lq~El~~ 271 (794)
.....+..-...+.+
T Consensus 131 ~~~k~~~~~re~~~~ 145 (546)
T KOG0977|consen 131 KAEKERRGAREKLDD 145 (546)
T ss_pred HHHHHHhhhHHHHHH
Confidence 776655444444433
No 32
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.11 E-value=0.0072 Score=70.45 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=51.9
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003810 246 DNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATET 325 (794)
Q Consensus 246 ~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~ 325 (794)
.++..|..+|..--+++..|..+-..|..++..++....... .-.+..+-.++-.+-.-+.+....+.++...
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~t-------s~ik~~ye~El~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRET-------SGIKAKYEAELATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-------cchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555656666667777777777777777666665221 2345555566666666666666666666667
Q ss_pred HHHHHHHHHHH
Q 003810 326 ISSLQVLVAEK 336 (794)
Q Consensus 326 ~~rLqeeLeel 336 (794)
+.+|..++.++
T Consensus 115 i~kl~~e~~el 125 (546)
T KOG0977|consen 115 ITKLREELKEL 125 (546)
T ss_pred HHHhHHHHHHH
Confidence 77777777633
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.10 E-value=0.068 Score=65.98 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003810 656 AEQQILLLARQQAQREEELAQSQRHILA 683 (794)
Q Consensus 656 ~e~~~l~~a~~~a~re~El~~~~~~~~~ 683 (794)
+++.|..++..++.-+.++....+||+.
T Consensus 1722 ~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1722 NEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4567777888877777777776666654
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.04 E-value=0.062 Score=63.31 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhh
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAM 230 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~ 230 (794)
.++...+.++..+.+.+......+....+....+-.+|..+|...++-...+
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kL 78 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKL 78 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777666666666666677777777666644433
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.84 E-value=0.045 Score=58.00 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
..+...|...+.-++.........+..+.+.|..+...+++
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de 75 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADE 75 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555544
No 36
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.83 E-value=0.14 Score=60.88 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHH
Q 003810 473 LEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALN-NANQQIKSIEIKLDSMNTKLQVEKE 542 (794)
Q Consensus 473 Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~e-e~r~qir~lE~~l~~~~~~~~~~kk 542 (794)
+...+..++..+......--.+-.++..+...|++.|+++-.+++ -++.++.++|+.|+.++-+|....-
T Consensus 540 l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVV 610 (739)
T PF07111_consen 540 LEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVV 610 (739)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555666666777777777777666 4557788888888887765544444
No 37
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.77 E-value=0.00018 Score=87.38 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 003810 604 EEKDNEISRLLDDNKNLHRSL 624 (794)
Q Consensus 604 ~eke~el~kL~~e~~~l~~~L 624 (794)
.-+...++.|+++|..|...+
T Consensus 562 ~~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 562 QIKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446688899999999998777
No 38
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.76 E-value=0.27 Score=61.67 Aligned_cols=87 Identities=21% Similarity=0.358 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHH---hHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 003810 184 VQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDA---LKAMDIERQQLRSANNKLRDNIEELCRSFQPKED 260 (794)
Q Consensus 184 Lq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe---~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~ 260 (794)
+|++.....+.+.+++.++..+++.+..+.-+|.+.++...-. ...+...+..|+...-.+..+.+.......-..+
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e 571 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE 571 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence 3566666666666666666666666666666666664444321 2223333344444444444444444433333333
Q ss_pred HHHHHHHHHH
Q 003810 261 ALEALQLSLQ 270 (794)
Q Consensus 261 a~~~Lq~El~ 270 (794)
-+.+++.++.
T Consensus 572 ~~~~iq~~~e 581 (1317)
T KOG0612|consen 572 LSKQIQQELE 581 (1317)
T ss_pred hhHHHHHHhh
Confidence 3444444444
No 39
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.31 Score=60.91 Aligned_cols=108 Identities=16% Similarity=0.271 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQ 256 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~le 256 (794)
..+++..|..+++.......+.+...+..+..+..++.++.++...++.+-+.++.....+...-..+..++..+...+.
T Consensus 410 ~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~ 489 (1293)
T KOG0996|consen 410 LTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELM 489 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 56777777888888888888888888888888888888888888888877777777777777777777778887777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 257 PKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 257 e~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
..-..+.+...+++....+|..+.....
T Consensus 490 ~~~~~~n~~~~e~~vaesel~~L~~~~~ 517 (1293)
T KOG0996|consen 490 PLLKQVNEARSELDVAESELDILLSRHE 517 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666666544443
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.70 E-value=0.26 Score=59.89 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADA 315 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~ 315 (794)
.|+..++.|.++++-|+-+-.+-..++ .|++.+..++.. +.|||.+.......|+.++-..
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk~Kl----~Elekmkiqleq---------------lqEfkSkim~qqa~Lqrel~ra 288 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDKAKL----KELEKMKIQLEQ---------------LQEFKSKIMEQQADLQRELKRA 288 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777776666555444443 233334222222 3466666666666666666555
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 003810 316 VSDRSKATETISSLQVLVA 334 (794)
Q Consensus 316 ~~~~~kl~~~~~rLqeeLe 334 (794)
..+...+.....+...++.
T Consensus 289 R~e~keaqe~ke~~k~ema 307 (1243)
T KOG0971|consen 289 RKEAKEAQEAKERYKEEMA 307 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5544444555555555555
No 41
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.65 E-value=0.26 Score=58.56 Aligned_cols=215 Identities=20% Similarity=0.267 Sum_probs=114.3
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhcccCCCCCcchhhhhh-hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 55 EQLLGLVMELKLQNEFLKSQFEGLNTLRPEDDGQESREV-VDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEE 133 (794)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~ 133 (794)
++.-++.|++. +.+---|.+|..++.--.. .++|. -.|++--++++.|.... +...-..+.++.-|+....+
T Consensus 179 EET~qly~~l~---~niekMi~aFEeLR~qAEn-~r~EM~fKlKE~~~k~~~leeey---~~E~n~kEkqvs~L~~q~~e 251 (786)
T PF05483_consen 179 EETRQLYMDLN---ENIEKMIAAFEELRVQAEN-DRQEMHFKLKEDYEKFEDLEEEY---KKEVNDKEKQVSLLQTQLKE 251 (786)
T ss_pred HHHHHHHHHHh---hhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHh
Confidence 55556666653 3333333333332221111 24444 36777777777777663 23344477788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH
Q 003810 134 ADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQ 213 (794)
Q Consensus 134 ~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq 213 (794)
+|..++.+...|.+.+.+.... +.... ..+.+-+.++.....|..++.+....+.........+...+....
T Consensus 252 Ken~~kdl~~~l~es~~~~~qL----eE~~~----~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~ 323 (786)
T PF05483_consen 252 KENKIKDLLLLLQESQDKCNQL----EEKTK----EQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQAT 323 (786)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888876554 33222 222232333444444555555555555443333333333333332
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 214 QELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 214 ~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
.-+.++-..-+.....+--++..-...+-.+...+..|++.|......+..+..++.-+..+|..-...+.
T Consensus 324 k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~ele 394 (786)
T PF05483_consen 324 KTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELE 394 (786)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHH
Confidence 22222222111111111123445555566666667777777777766666666666666555555333333
No 42
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.60 E-value=0.32 Score=58.42 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=58.4
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 003810 160 EDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRS 239 (794)
Q Consensus 160 ~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~ 239 (794)
.-.+.....++..--..|+++++++-.++..|.+........+..+.+.++.|..++......-- ......+-..|..
T Consensus 10 q~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~--pa~pse~E~~Lq~ 87 (617)
T PF15070_consen 10 QAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEP--PAGPSEVEQQLQA 87 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccc--cccchHHHHHHHH
Confidence 33333333344433334788888887777777777666666666666666666666554331111 1111222346777
Q ss_pred HHHHHHHHHHHHHHhcchHHHH
Q 003810 240 ANNKLRDNIEELCRSFQPKEDA 261 (794)
Q Consensus 240 ~~rkL~~e~eeLke~lee~e~a 261 (794)
.+..|..+++.|..++.+....
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ 109 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVEN 109 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888777665443
No 43
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.54 E-value=0.39 Score=57.75 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHH
Q 003810 293 SIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREH 372 (794)
Q Consensus 293 ~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ 372 (794)
++.|.-.-++.--..++...+++......+...++..-..+-.+.++..++.-.-+.. +-+.+.+..-+.-...++
T Consensus 253 ~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a----~gdseqatkylh~enmkl 328 (1265)
T KOG0976|consen 253 MIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRA----DGDSEQATKYLHLENMKL 328 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHH
Confidence 4444444444333333444444444444444444444444444444444442111111 124445555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 003810 373 EKEKESWEAASQAFRKKLEIAESNC 397 (794)
Q Consensus 373 ek~~~e~k~~~~el~~eLe~aE~~~ 397 (794)
..++..++-.+-+..-+++...+..
T Consensus 329 trqkadirc~LlEarrk~egfddk~ 353 (1265)
T KOG0976|consen 329 TRQKADIRCALLEARRKAEGFDDKL 353 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHH
Confidence 6666655555555554444443333
No 44
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.52 E-value=0.36 Score=56.94 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 110 LQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKD 189 (794)
Q Consensus 110 ~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~ 189 (794)
.++-|.++.....++.++. ..+..++.|...+.++...+...|++.-.. .-..+...|..+...|..+..
T Consensus 123 ~~~lk~~lee~~~el~~~k----~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~------~e~~~~q~~~e~e~~L~~~~~ 192 (629)
T KOG0963|consen 123 NEELKEELEEVNNELADLK----TQQVTVRNLKERLRKLEQLLEIFIENAANE------TEEKLEQEWAEREAGLKDEEQ 192 (629)
T ss_pred HHHHHHHHHHHHHHHhhhh----hhHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433 345566677777777777777775533221 223344558899999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhh-HH---H---HHHHHHHHHHHHHHHHHHHHhcchHHH
Q 003810 190 DLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAM-DI---E---RQQLRSANNKLRDNIEELCRSFQPKED 260 (794)
Q Consensus 190 ~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~-e~---~---re~Le~~~rkL~~e~eeLke~lee~e~ 260 (794)
.+..+++.++.++..+.+.+-..+.++.+.+..+++++..- +. + -+.-..++..|+.+++.|+.++...++
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999988665421 00 0 012233445555556666665555554
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.59 Score=58.58 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=18.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 502 LANHDKELAERDAALNNANQQIKSIEIKLDSMNT 535 (794)
Q Consensus 502 ~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~ 535 (794)
++--++.++.-+..+.++..-+..++.+++.+..
T Consensus 930 i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 930 IKTSDRNIAKAQKKLSELEREIEDTEKELDDLTE 963 (1293)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555566666666666665554
No 46
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.44 E-value=0.56 Score=57.24 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHH
Q 003810 234 RQQLRSANNKLRDNIEELCRSFQPKEDA 261 (794)
Q Consensus 234 re~Le~~~rkL~~e~eeLke~lee~e~a 261 (794)
|++.++...-|+-+++.+++++++.+..
T Consensus 320 KEmAEERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 320 KEMAEERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 47
>PRK01156 chromosome segregation protein; Provisional
Probab=97.44 E-value=0.67 Score=58.00 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=12.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 315 AVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 315 ~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
+..+...+...+..|...+.++...+..|
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el 442 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDEL 442 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.44 E-value=0.087 Score=61.92 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHh
Q 003810 115 ETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYT 164 (794)
Q Consensus 115 ~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~ 164 (794)
..+..+...+..+...+......+..+..+...--..+.++++.+...+.
T Consensus 181 ~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~ 230 (562)
T PHA02562 181 QQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAK 230 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443333333333333333333
No 49
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.36 E-value=0.63 Score=56.01 Aligned_cols=160 Identities=19% Similarity=0.311 Sum_probs=81.9
Q ss_pred HHHHHhhhhhHHhhhchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003810 450 AHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDKALQEL---QEALANHDKELAERDAALNNANQQIKSI 526 (794)
Q Consensus 450 ahaLlk~K~~~l~aa~E~e~~r~Le~~l~E~E~~l~~a~~er~ra~~el---q~~~~~~~rel~e~~~~~ee~r~qir~l 526 (794)
...+...|. .+.|-..+-++|...+.|+....-..+.++..+...| +.+.+++...|......+.+++.++..-
T Consensus 145 Le~lqsdk~---t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 145 LEQLQSDKA---TASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred Hhhhcccch---HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444 2333345566799999999998888887776666666 4455555555554444444444444333
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHH
Q 003810 527 EIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFR---DLADRMM 603 (794)
Q Consensus 527 E~~l~~~~~~~~~~kk~~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~E~e~~r---~~~~~~l 603 (794)
...+..+.. ....+ +.+|+. |...+..+-. -.+.+.+++---.+-|.+|+.+--.-+ .....-+
T Consensus 222 ~qE~~~Lq~----q~dq~---~~~Lqq-y~a~~q~l~~-----e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~EL 288 (617)
T PF15070_consen 222 SQEAQSLQE----QRDQY---LGHLQQ-YVAAYQQLAS-----EKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQEL 288 (617)
T ss_pred hHHHHHHHH----HHHHH---HHHHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 332222221 22211 222221 1111111111 334445554332333566664322222 1222344
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 003810 604 EEKDNEISRLLDDNKNLHRSLE 625 (794)
Q Consensus 604 ~eke~el~kL~~e~~~l~~~L~ 625 (794)
.+..-.|+.+...|..|+..|.
T Consensus 289 q~~qe~Lea~~qqNqqL~~qls 310 (617)
T PF15070_consen 289 QEAQEHLEALSQQNQQLQAQLS 310 (617)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 6677788888888888888774
No 50
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.34 E-value=0.0035 Score=76.33 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 505 HDKELAERDAALNNANQQIKSIEIKLDS 532 (794)
Q Consensus 505 ~~rel~e~~~~~ee~r~qir~lE~~l~~ 532 (794)
+..++.....++..++..+..|+.+|..
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777766
No 51
>PRK11637 AmiB activator; Provisional
Probab=97.25 E-value=0.47 Score=54.45 Aligned_cols=87 Identities=11% Similarity=0.232 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHH
Q 003810 96 VKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHK 175 (794)
Q Consensus 96 v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~ 175 (794)
++.+..++.++++.+..-+..+..+..++..+...+......+..+..++..++.++..- +..+.++..++.....
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l----~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDEL----NASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344444444444444444444444555555555555555555555555555444443333 5555555556666655
Q ss_pred HHHHHHHHHHH
Q 003810 176 RAKQRIQEVQK 186 (794)
Q Consensus 176 ~~kqriqeLq~ 186 (794)
..+.+++.+..
T Consensus 125 ~l~~rlra~Y~ 135 (428)
T PRK11637 125 LLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHH
Confidence 55566665544
No 52
>PRK11637 AmiB activator; Provisional
Probab=97.24 E-value=0.32 Score=55.80 Aligned_cols=48 Identities=15% Similarity=0.304 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 98 ELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKL 145 (794)
Q Consensus 98 el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql 145 (794)
.+.++++++++.+...++.+..+...+..+...+...+.++..+..++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665544444444444444444444433333333333333
No 53
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.20 E-value=0.87 Score=54.32 Aligned_cols=203 Identities=18% Similarity=0.208 Sum_probs=120.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH---HhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 312 LADAVSDRSKATETISSLQVLVAEKETTIAEME---AASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRK 388 (794)
Q Consensus 312 ~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~---~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~ 388 (794)
..++...+..+.-....+..+....-.+.|.+. ..+.....++...++.+...-..++..++-.+.+++.+.++++.
T Consensus 487 N~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 487 NTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666666662 23333333456667777777777788888888899999999999
Q ss_pred HHHHHHhhhhhhHHH--------------HHHHHhHHHh------HHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHh
Q 003810 389 KLEIAESNCIHTEIE--------------AAKLRSQLES------ELSVQNQL----LSTRDAELMAAKQEIIHLEREFS 444 (794)
Q Consensus 389 eLe~aE~~~~r~e~e--------------~~~lk~e~E~------el~~~~~~----l~~~~~~l~~~q~e~~~le~Ele 444 (794)
.|+..+..+|..+-+ +..+|.+++- ++...|+. +.++...+..+.-.|.+|+.|++
T Consensus 567 kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e 646 (786)
T PF05483_consen 567 KLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELE 646 (786)
T ss_pred HhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887755444 4455555543 34444443 34455567777888899999998
Q ss_pred HhHHHHHHHHhhhhhHHhhhchHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----------HHhhhHHH
Q 003810 445 SYKIRAHALLQKKDAELVAANDTEQL----RALEEALKETEKEMSLVSAEKDKALQELQEA-----------LANHDKEL 509 (794)
Q Consensus 445 ~~K~RahaLlk~K~~~l~aa~E~e~~----r~Le~~l~E~E~~l~~a~~er~ra~~elq~~-----------~~~~~rel 509 (794)
..+....+....-. +|.+.. ..|.+.+.-+..-.+-|..-..++..--|.- ..+|++-+
T Consensus 647 ~~kk~~eE~~~~~~------keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiV 720 (786)
T PF05483_consen 647 NLKKKHEEETDKYQ------KEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIV 720 (786)
T ss_pred HHHhHHHHHHHHHH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 86654444443322 222111 2233333333333333443333332222332 34567888
Q ss_pred HHHHHHHHHHH
Q 003810 510 AERDAALNNAN 520 (794)
Q Consensus 510 ~e~~~~~ee~r 520 (794)
.+++.++-.++
T Consensus 721 EEkDaEL~~~k 731 (786)
T PF05483_consen 721 EEKDAELGLYK 731 (786)
T ss_pred HHHHHHHHHHH
Confidence 88888888776
No 54
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.18 E-value=0.98 Score=54.53 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003810 294 IAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVA 334 (794)
Q Consensus 294 L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLe 334 (794)
+.-|...+..++..-+..+.++.....-+..+..+.-..++
T Consensus 275 lk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdse 315 (1265)
T KOG0976|consen 275 LKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSE 315 (1265)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 44445555566666666666666666666555555554444
No 55
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.17 E-value=0.92 Score=54.14 Aligned_cols=322 Identities=17% Similarity=0.231 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQ 256 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~le 256 (794)
++..+..+..-++....++......+..+-..-..-...+..++..+.+--+.+-+.+-.+..+...|...++.+...+.
T Consensus 103 a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~ 182 (569)
T PRK04778 103 AKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFS 182 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665555555555555556666666666654444444455555566666666666655554
Q ss_pred hHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHH
Q 003810 257 PKEDAL-----EALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVS-----DRSKATETI 326 (794)
Q Consensus 257 e~e~a~-----~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~-----~~~kl~~~~ 326 (794)
.-.+-. -.-..-+..+...+..+...+... =..+.+++.-+=..++.|..-++++.. ........+
T Consensus 183 ~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i----P~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i 258 (569)
T PRK04778 183 QFVELTESGDYVEAREILDQLEEELAALEQIMEEI----PELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEI 258 (569)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHH
Confidence 443300 111122222222233322222200 001223333334667777777777776 233455677
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 003810 327 SSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKE---KESWEAASQAFRKKLEIAESNCIHTEIE 403 (794)
Q Consensus 327 ~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~---~~e~k~~~~el~~eLe~aE~~~~r~e~e 403 (794)
..++..|.....-++.|... .+...++.+...+..+-..++++ +.........+.+.|..+......+..+
T Consensus 259 ~~l~~~i~~~~~~l~~l~l~------~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 259 QDLKEQIDENLALLEELDLD------EAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777655555555321 22344555566666666666666 4445555555666666655555555555
Q ss_pred HHHHHhHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHHHHHHHHHHH
Q 003810 404 AAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKE 483 (794)
Q Consensus 404 ~~~lk~e~E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~l~E~E~~ 483 (794)
+..++..+.. .............++..++..+.. ...-...+. . .+..+...+.++..+
T Consensus 333 i~~l~~sY~l--------~~~e~~~~~~lekeL~~Le~~~~~----~~~~i~~~~--------~-~ysel~e~leel~e~ 391 (569)
T PRK04778 333 IDRVKQSYTL--------NESELESVRQLEKQLESLEKQYDE----ITERIAEQE--------I-AYSELQEELEEILKQ 391 (569)
T ss_pred HHHHHHcccc--------CchhHHHHHHHHHHHHHHHHHHHH----HHHHHHcCC--------C-CHHHHHHHHHHHHHH
Confidence 5555554322 112222333335555555544443 111111111 1 244566667777777
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 484 MSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSM 533 (794)
Q Consensus 484 l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~ 533 (794)
+.....+...+...++.+.+. -.+....+..++..+..+.+.+...
T Consensus 392 leeie~eq~ei~e~l~~Lrk~----E~eAr~kL~~~~~~L~~ikr~l~k~ 437 (569)
T PRK04778 392 LEEIEKEQEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777777776666666654443 2223344556666666666555544
No 56
>PRK01156 chromosome segregation protein; Provisional
Probab=97.12 E-value=1.4 Score=55.18 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 116 TRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQ 150 (794)
Q Consensus 116 ~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~ 150 (794)
.+......+..+...+.+..+.+..+...+..+..
T Consensus 184 ~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~ 218 (895)
T PRK01156 184 NIDYLEEKLKSSNLELENIKKQIADDEKSHSITLK 218 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555444333
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.07 E-value=0.34 Score=59.06 Aligned_cols=190 Identities=21% Similarity=0.306 Sum_probs=99.0
Q ss_pred HhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003810 412 ESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEK 491 (794)
Q Consensus 412 E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~l~E~E~~l~~a~~er 491 (794)
|.++.-+--.+..-...+ +.++..++.+-+....|.|.|-+.|. .|-..+..| |.+|....+.|
T Consensus 441 E~ELRsqis~l~~~Er~l---k~eL~qlr~ene~Lq~Kl~~L~~aRq------~DKq~l~~L-------EkrL~eE~~~R 504 (697)
T PF09726_consen 441 EQELRSQISSLTNNERSL---KSELSQLRQENEQLQNKLQNLVQARQ------QDKQSLQQL-------EKRLAEERRQR 504 (697)
T ss_pred HHHHHHHHhhccccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH-------HHHHHHHHHHH
Confidence 334544433344433444 77788888888887778888888886 454444333 33444445555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 492 DKALQELQEALANHDKELAERD-----------AALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCE 560 (794)
Q Consensus 492 ~ra~~elq~~~~~~~rel~e~~-----------~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~~~r~~~e 560 (794)
..++++|+...+....+-+... .-.+-.+.+.++||.+++.++.++.. .+..+..++...+
T Consensus 505 ~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~----kee~~~~~e~~~~---- 576 (697)
T PF09726_consen 505 ASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQ----KEEQIRELESELQ---- 576 (697)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----
Confidence 6666666554443222211111 22344677888888888888854322 2223333332221
Q ss_pred HHHHH-hh-hccchhHHHHHHHHHHHHHHHHHhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 561 LLKAQ-KE-ESSGQDVQKELQELKLQYKRLKDEH-----------------DSFRDLADRMMEEKDNEISRLLDDNKNLH 621 (794)
Q Consensus 561 ~le~~-~e-~aa~~e~~kel~elq~~~~~L~~E~-----------------e~~r~~~~~~l~eke~el~kL~~e~~~l~ 621 (794)
.|... .+ ..-.+.+.-.|..||.....|+.-| -.+-+.+...+..+|++|..|++.+..+-
T Consensus 577 ~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 577 ELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 01 0122334445556666666665522 22222223334667888888888777776
Q ss_pred hhcC
Q 003810 622 RSLE 625 (794)
Q Consensus 622 ~~L~ 625 (794)
.-+|
T Consensus 657 av~p 660 (697)
T PF09726_consen 657 AVMP 660 (697)
T ss_pred hcCC
Confidence 5554
No 58
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.06 E-value=0.7 Score=50.79 Aligned_cols=181 Identities=20% Similarity=0.276 Sum_probs=105.0
Q ss_pred cCCCCCCCchHHHHHHHHHhhhhhHHHHHhhhhcccCCCCCcchhhhhhhhHHHHHHHHHHhhhhhH--HHHHHHHH---
Q 003810 45 DEHGSSNDNNEQLLGLVMELKLQNEFLKSQFEGLNTLRPEDDGQESREVVDVKELRERIESLSKELQ--EEKETRGA--- 119 (794)
Q Consensus 45 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~el~eq~e~l~r~~e--k~k~~l~~--- 119 (794)
+|+|.+.-|.++|..-|-.|.-+|.-||.....++ ..+++|.+.+..|....- -.+.+.+.
T Consensus 13 ~~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek--------------~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~i 78 (310)
T PF09755_consen 13 GMTSSSSATREQLRKRIESLQQENRVLKRELETEK--------------ARCKHLQEENRALREASVRIQAKAEQEEEFI 78 (310)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888889999999999999999999887776 356677777776666510 00111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVG 199 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e 199 (794)
...-++.++..+.+++.-+..| ..+= +.--..|.. ++.+|+.|+.+|...++...
T Consensus 79 sN~LlKkl~~l~keKe~L~~~~-----------e~EE---E~ltn~L~r-----------kl~qLr~EK~~lE~~Le~Eq 133 (310)
T PF09755_consen 79 SNTLLKKLQQLKKEKETLALKY-----------EQEE---EFLTNDLSR-----------KLNQLRQEKVELENQLEQEQ 133 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHH---HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhH
Confidence 2222333333333333222222 1110 111122223 34444888888888887654
Q ss_pred HH-HHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHHHH
Q 003810 200 ET-AERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDAL-EALQLSLQEKDQMLE 277 (794)
Q Consensus 200 ~~-~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~-~~Lq~El~~l~~~L~ 277 (794)
+- +..+.+.+..|..+. ..+...+.+|..++-+|...|+..++.+ ++|+..++.+.....
T Consensus 134 E~~V~kL~k~i~~Le~e~------------------~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr 195 (310)
T PF09755_consen 134 EYLVNKLQKKIERLEKEK------------------SAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKR 195 (310)
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 446666666543322 1334445577777777888888887744 888888888844443
Q ss_pred HHHHH
Q 003810 278 DMRTL 282 (794)
Q Consensus 278 ~~r~~ 282 (794)
.++..
T Consensus 196 ~Lq~~ 200 (310)
T PF09755_consen 196 RLQEK 200 (310)
T ss_pred HHHHH
Confidence 33333
No 59
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.05 E-value=0.61 Score=54.89 Aligned_cols=107 Identities=12% Similarity=0.248 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003810 173 LHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELC 252 (794)
Q Consensus 173 lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLk 252 (794)
+....|.++++++.+++.+...+......+..+.+.+..+..++......++.....+......+...+..|..++..+.
T Consensus 168 ~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 168 MDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33335666666666666666666665555554444444444333222222222222222244566666666666666666
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHH
Q 003810 253 RSFQPKEDALEALQLSLQEKDQMLEDM 279 (794)
Q Consensus 253 e~lee~e~a~~~Lq~El~~l~~~L~~~ 279 (794)
.......+.+..+...+..+..++..+
T Consensus 248 ~~i~~~~~~L~~l~~~~~~~~~~l~~~ 274 (562)
T PHA02562 248 MDIEDPSAALNKLNTAAAKIKSKIEQF 274 (562)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555555555554444443
No 60
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.05 E-value=1.7 Score=54.91 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH
Q 003810 141 FSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 141 l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l 173 (794)
+....++.+.++.++ ..++..+...+.++
T Consensus 492 ~q~~~ke~~ek~~~~----~~~~~~l~~~~~~~ 520 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEE----EAKKRKLEALVRQL 520 (1317)
T ss_pred HHHhhhHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 555556666666666 44444444444444
No 61
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.01 E-value=1.8 Score=54.53 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=11.3
Q ss_pred HHhhhhhhhhHHhhHHHHHHHH
Q 003810 152 LGQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 152 l~ee~~~l~~~~~el~~~~~~l 173 (794)
+..+|+.+.+.+.++......+
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~ 251 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERL 251 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444
No 62
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.00 E-value=1.7 Score=53.97 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003810 472 ALEEALKETEKEMSLVSAEKDKALQELQEALA--NHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQ 549 (794)
Q Consensus 472 ~Le~~l~E~E~~l~~a~~er~ra~~elq~~~~--~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~ 549 (794)
.+..-+.+++..+-.-.+++.-+.++.+.++- +-.--|+ ..++++...-+.+..-++.+. .+...+++++..+.
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LE---q~~n~lE~~~~elkk~idaL~-alrrhke~LE~e~m 602 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLE---QNNNDLELIHNELKKYIDALN-ALRRHKEKLEEEIM 602 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHH---HhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 34445567777777888888888888876655 2211111 223333333444444444444 23445555555443
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.96 E-value=1.8 Score=53.69 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 122 KALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLE 192 (794)
Q Consensus 122 ~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~ 192 (794)
..=.||....++++++|+.|..++.|--..|.+- ...+.++...|.+| .|.+.++.++.....
T Consensus 170 ~~~~hL~velAdle~kir~LrqElEEK~enll~l----r~eLddleae~~kl----rqe~~e~l~ea~ra~ 232 (1195)
T KOG4643|consen 170 KKNLHLEVELADLEKKIRTLRQELEEKFENLLRL----RNELDDLEAEISKL----RQEIEEFLDEAHRAD 232 (1195)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHhhh
Confidence 4446889999999999999998888666555555 33333444455555 355555555544433
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.90 E-value=0.57 Score=57.10 Aligned_cols=50 Identities=18% Similarity=0.388 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 003810 140 EFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL---HKRAKQRIQEVQKEKDDLET 193 (794)
Q Consensus 140 ~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l---h~~~kqriqeLq~E~~~L~e 193 (794)
+|+..++-+..+|.-. .-.=.||..++.-+ +..+|..+.+++.+++.|+.
T Consensus 422 rLE~dvkkLraeLq~~----Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 422 RLEADVKKLRAELQSS----RQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHHHHHHHhh----hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Confidence 5666666555555444 33333444444433 22345555555555554443
No 65
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.89 E-value=1.7 Score=52.27 Aligned_cols=271 Identities=18% Similarity=0.198 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHH
Q 003810 233 ERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQ-------AAEEKRQASIAELSAKHQKNL 305 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq-------~~~Ekkq~~L~E~K~k~q~e~ 305 (794)
.|+.|-..++.|++|.+.|...++=.+-.++.|.-=+.--.-.+.+ +++ ....|.+..|.=|+.|.-.=+
T Consensus 243 Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~---Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLm 319 (739)
T PF07111_consen 243 EREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCR---KVQPSDPLEPEFSRKCQQLLSRWREKVFALM 319 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555544443332211111000111 111 112233445666666664444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHH
Q 003810 306 ESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKG-----ELAHLKREHEKEKESWE 380 (794)
Q Consensus 306 E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~-----el~~l~kk~ek~~~e~k 380 (794)
--|..+--+.+....++...+..|+..+.....+...|..+=.+..+ ...+|++.. ++........ -++
T Consensus 320 VQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~A--ElevERv~sktLQ~ELsrAqea~~----~lq 393 (739)
T PF07111_consen 320 VQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAA--ELEVERVGSKTLQAELSRAQEARR----RLQ 393 (739)
T ss_pred HHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHhhHHHHHHHHHHHHHHH----HHH
Confidence 45555555555666666667777777777666666665322111111 122222211 1221111111 122
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH--Hhhhh
Q 003810 381 AASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHAL--LQKKD 458 (794)
Q Consensus 381 ~~~~el~~eLe~aE~~~~r~e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaL--lk~K~ 458 (794)
..+...+..|.. +.. .+.....-+...+..+..+...+.+|..-|.=.--|+|-+ +..++
T Consensus 394 qq~~~aee~Lk~--------------v~e----av~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark 455 (739)
T PF07111_consen 394 QQTASAEEQLKL--------------VSE----AVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARK 455 (739)
T ss_pred HHHHHHHHHHHH--------------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHH
Confidence 222222222221 111 1222222355556666666667777666555211112211 11111
Q ss_pred hHHhh-hchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 003810 459 AELVA-ANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALN----NANQQIKSIEIKLDS 532 (794)
Q Consensus 459 ~~l~a-a~E~e~~r~Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~e----e~r~qir~lE~~l~~ 532 (794)
..|.- +.+.+.. .---..++..+|....++||++-.+|+-...-++.++.+...+.+ .+......|+..|..
T Consensus 456 ~Alaqlrqe~~~~--~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~ 532 (739)
T PF07111_consen 456 LALAQLRQEQCPP--SPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQE 532 (739)
T ss_pred HHHHHHHhccCCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 0000000 000024567778888999999999998766666667665544433 233444444444433
No 66
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.85 E-value=2.1 Score=52.76 Aligned_cols=133 Identities=24% Similarity=0.335 Sum_probs=83.8
Q ss_pred HHHHHHHHhHHHhHHH---HhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHH-HHHHH
Q 003810 401 EIEAAKLRSQLESELS---VQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLR-ALEEA 476 (794)
Q Consensus 401 e~e~~~lk~e~E~el~---~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r-~Le~~ 476 (794)
+.++..+|.+++.-+. ....-..--+..|++|-++++...+|-+ +|+|....+++ ++-+-++ +|+..
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~e---q~i~~~~~~~s------~e~e~~~~~le~~ 93 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQE---QKIHEAVAKKS------KEWEKIKSELEAK 93 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHH---HHHHHHHHHHh------HHHHHHHHHHHHH
Confidence 3445556665555211 1111122335567777888888876665 47999999887 6666665 78999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003810 477 LKETEKEMSLVSAEKDKALQEL---QEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKE 542 (794)
Q Consensus 477 l~E~E~~l~~a~~er~ra~~el---q~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk 542 (794)
+.|+..+|..+..+..-+-.-| ..++.++...-.....++..+..++.++|+...++.-++.-.-+
T Consensus 94 l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~k 162 (769)
T PF05911_consen 94 LAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSK 162 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877777776555544 33555555555555566667777777777777777644433333
No 67
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.81 E-value=1.7 Score=51.27 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 576 KELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKN 619 (794)
Q Consensus 576 kel~elq~~~~~L~~E~e~~r~~~~~~l~eke~el~kL~~e~~~ 619 (794)
.+++-+...+..+++++..++...---+.+++.++.+|+..+..
T Consensus 337 ~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~ 380 (511)
T PF09787_consen 337 AELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSA 380 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777788888888888888889999999998887554
No 68
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.75 E-value=0.17 Score=49.80 Aligned_cols=92 Identities=22% Similarity=0.409 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---
Q 003810 125 EHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGET--- 201 (794)
Q Consensus 125 ~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~--- 201 (794)
..|+..+.++-.+...++.+++++......- ...+..|..++..+. ..|..++..+..+...+++.+..
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~----E~EI~sL~~K~~~lE----~eld~~~~~l~~~k~~lee~~~~~~~ 74 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQK----EQEITSLQKKNQQLE----EELDKLEEQLKEAKEKLEESEKRKSN 74 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 4555556666666666666666555554444 444554444444441 22233333333333333333222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 003810 202 AERASSQCSALQQELERTRQQAN 224 (794)
Q Consensus 202 ~~~lsk~~ssLq~qL~d~r~qle 224 (794)
...+.+.+..|..+|..+-..+.
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 12344455555555544444444
No 69
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.70 E-value=2.2 Score=50.94 Aligned_cols=337 Identities=16% Similarity=0.259 Sum_probs=188.7
Q ss_pred hhHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 003810 160 EDKYTELDSKFTRLH-KRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLR 238 (794)
Q Consensus 160 ~~~~~el~~~~~~lh-~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le 238 (794)
...+.+......+.+ ++++..+..++..++.+...+......+..+-..-..-...+..++..+..--+.+.+.+-.+.
T Consensus 81 e~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G 160 (560)
T PF06160_consen 81 EEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYG 160 (560)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 444444444444442 3477777777777777777777777777777666666667777777777765555555666667
Q ss_pred HHHHHHHHHHHHHHHhcchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003810 239 SANNKLRDNIEELCRSFQPKED--------ALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEA 310 (794)
Q Consensus 239 ~~~rkL~~e~eeLke~lee~e~--------a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa 310 (794)
.....|...++.+...+..-.+ +...+...+... +..+...+. .-=..+.+.+...-..++.+..
T Consensus 161 ~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~---~~~l~~~~e----~IP~l~~~l~~~~P~ql~eL~~ 233 (560)
T PF06160_consen 161 PAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEE---TDELEEIME----DIPKLYKELQKEFPDQLEELKE 233 (560)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HHHHHHHHH----HhHHHHHHHHHHhHHHHHHHHH
Confidence 7777777777777666555543 222222222222 332222222 0001123334444467777777
Q ss_pred HHHHHHHh-----HHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 003810 311 QLADAVSD-----RSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKE---KESWEAA 382 (794)
Q Consensus 311 ~~~E~~~~-----~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~---~~e~k~~ 382 (794)
-+.++... .......+..+...+.....-+++|... .+...++.+...+..+-.-++++ +......
T Consensus 234 gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~------~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~ 307 (560)
T PF06160_consen 234 GYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELD------EVEEENEEIEERIDQLYDILEKEVEAKKYVEKN 307 (560)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777762 2234457777777777665555555321 22345566666667777777776 5567777
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHh
Q 003810 383 SQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELV 462 (794)
Q Consensus 383 ~~el~~eLe~aE~~~~r~e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~ 462 (794)
+..+.+.+.++......+..++..++..+.. .............++..+...|.. ....+....
T Consensus 308 ~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L--------~~~e~~~~~~l~~~l~~l~~~~~~----~~~~i~~~~---- 371 (560)
T PF06160_consen 308 LKELYEYLEHAKEQNKELKEELERVSQSYTL--------NHNELEIVRELEKQLKELEKRYED----LEERIEEQQ---- 371 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCC----
Confidence 7777788887777777777777777765533 001111222224455555444444 222222222
Q ss_pred hhchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 463 AANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMN 534 (794)
Q Consensus 463 aa~E~e~~r~Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~ 534 (794)
.-...+...+.++...|.....+.......++.+..+ -......+..++..++.+.+.+...+
T Consensus 372 -----~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~d----E~~Ar~~l~~~~~~l~~ikR~lek~n 434 (560)
T PF06160_consen 372 -----VPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKD----EKEAREKLQKLKQKLREIKRRLEKSN 434 (560)
T ss_pred -----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0223455566666666666665555555555544443 22333445566666666666665555
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.66 E-value=4.2 Score=53.71 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003810 671 EEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNMERSKK 717 (794)
Q Consensus 671 e~El~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir~ler~~~ 717 (794)
+.+|..++..+.++...+.+.......+..+...+|..+..|.+..+
T Consensus 836 e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 882 (1486)
T PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLP 882 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34566667777777777888888888888888888887776666543
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.51 E-value=0.43 Score=50.89 Aligned_cols=73 Identities=19% Similarity=0.362 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQ 256 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~le 256 (794)
||+++..|..++..|...+..++..+..+...+..+...+.+.+..++.+.. .+...+..+....+.|...+.
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~-------~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVA-------EIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 5777777777777777777777777777777777777777777777766555 334444444444444444443
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=3.9 Score=49.60 Aligned_cols=98 Identities=14% Similarity=0.229 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH---HHHHHHHHHHHHhc
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSAN---NKLRDNIEELCRSF 255 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~---rkL~~e~eeLke~l 255 (794)
-|++++..-++.-.+.+=-+..++.++.-.+.+|+-.++.+-.++.+---.+-.+|..++... .-...+++.|+.++
T Consensus 416 ar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqari 495 (1118)
T KOG1029|consen 416 ARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARI 495 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 345555544444444443445555555556666666555555555441111222333333222 22334445555555
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 003810 256 QPKEDALEALQLSLQEKDQML 276 (794)
Q Consensus 256 ee~e~a~~~Lq~El~~l~~~L 276 (794)
.+.++.+..|..|...++.++
T Consensus 496 kE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 496 KELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHH
Confidence 555555555555555554333
No 73
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.22 E-value=4 Score=48.59 Aligned_cols=279 Identities=22% Similarity=0.237 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHH
Q 003810 233 ERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAE--EKRQASIAELSAKHQKNLESLEA 310 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~--Ekkq~~L~E~K~k~q~e~E~LEa 310 (794)
-+.+....++..+.++|.|-.+....+.+.=.+=..|.++ = +=.-.+.++. ..++.-..+....+..+++....
T Consensus 60 k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~ea---P-DP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~ 135 (629)
T KOG0963|consen 60 KLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEA---P-DPVPLLASAAELLNKQQKASEENEELKEELEEVNN 135 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhC---C-CCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3456777788888888888888777776543322222221 0 0000011000 01111112333333445555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 311 QLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKL 390 (794)
Q Consensus 311 ~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eL 390 (794)
.+..+.+.......-+.++...-..++..+++.. ..+ -.....+...-...+......++.++..++..+
T Consensus 136 el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a-~~~---------e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki 205 (629)
T KOG0963|consen 136 ELADLKTQQVTVRNLKERLRKLEQLLEIFIENAA-NET---------EEKLEQEWAEREAGLKDEEQNLQEQLEELEKKI 205 (629)
T ss_pred HHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555333333333333333332222222210 000 011223344445555555667777788888888
Q ss_pred HHHHhhhhhhHHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHH
Q 003810 391 EIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQL 470 (794)
Q Consensus 391 e~aE~~~~r~e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~ 470 (794)
...+....-...+++.+++.++.++.....+...-+.+|..++..+.-++.+-+..+.-....=.+.+ +...-++
T Consensus 206 ~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~--~~~~~~i--- 280 (629)
T KOG0963|consen 206 SSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK--LAKIDDI--- 280 (629)
T ss_pred HHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hccCCch---
Confidence 88888888888899999999998888888888888888888888777777776652211111111111 0000111
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003810 471 RALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAW 544 (794)
Q Consensus 471 r~Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~ 544 (794)
..+...+ ...|+...+|. .++++-=.....+++....+|..++..+......+...++++
T Consensus 281 ~~~~~~L-----------~~kd~~i~~L~---~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 281 DALGSVL-----------NQKDSEIAQLS---NDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHHHH-----------hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11333333333 222222233346666777888888888887776443344333
No 74
>PRK09039 hypothetical protein; Validated
Probab=96.19 E-value=0.7 Score=51.81 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 94 VDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLA 146 (794)
Q Consensus 94 ~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~ 146 (794)
..+..|..||..|.-.+.-+......+...|..++..+..+.+.+.+|+..+.
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888777667777777999999999999888888888877766
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.17 E-value=7.7 Score=51.40 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHH
Q 003810 378 SWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQL 411 (794)
Q Consensus 378 e~k~~~~el~~eLe~aE~~~~r~e~e~~~lk~e~ 411 (794)
..+....++...|...+....+....+.+++..+
T Consensus 841 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 874 (1486)
T PRK04863 841 QLNRRRVELERALADHESQEQQQRSQLEQAKEGL 874 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544
No 76
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=4.1 Score=48.10 Aligned_cols=309 Identities=15% Similarity=0.220 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003810 126 HLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL---HKRAKQRIQEVQKEKDDLETRLRDVGETA 202 (794)
Q Consensus 126 ~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l---h~~~kqriqeLq~E~~~L~e~leE~e~~~ 202 (794)
.+........+....|..++++.. +..--++.|...+..+...+.+. -+..+++-+.+...+..|...+++.++.+
T Consensus 232 ~i~~~ie~l~~~n~~l~e~i~e~e-k~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~ 310 (581)
T KOG0995|consen 232 SIANEIEDLKKTNRELEEMINERE-KDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEI 310 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555222 22222334444444444444444 23356777777777777777777777777
Q ss_pred HHHHhhhHHHHHHHHHHHHHHH-HHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 203 ERASSQCSALQQELERTRQQAN-DALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRT 281 (794)
Q Consensus 203 ~~lsk~~ssLq~qL~d~r~qle-Ee~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~ 281 (794)
..+......|..++.-- .+. +....|-..|..|...+.++.-+++.|....=...-.++.--.++.+.-.++..+..
T Consensus 311 e~lq~~~d~Lk~~Ie~Q--~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~ 388 (581)
T KOG0995|consen 311 EKLQKENDELKKQIELQ--GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIR 388 (581)
T ss_pred HHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666655421 111 334445556667777777777777777766555554444444455555444444333
Q ss_pred HHHHH--HHHHH-H------------hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH--
Q 003810 282 LLQAA--EEKRQ-A------------SIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEME-- 344 (794)
Q Consensus 282 ~lq~~--~Ekkq-~------------~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~-- 344 (794)
.+--. ...+- . .-.-++.....-+.+...++-+...+...++..+..+...|+++.+.+..+.
T Consensus 389 ~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~e 468 (581)
T KOG0995|consen 389 RIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELE 468 (581)
T ss_pred HHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33311 00000 0 1112223334555666666666666666666666666666666666655552
Q ss_pred HhhcchhHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHhHHHHhh
Q 003810 345 AASTGKEARF-----KAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQN 419 (794)
Q Consensus 345 ~~s~~~~~~l-----~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe~aE~~~~r~e~e~~~lk~e~E~el~~~~ 419 (794)
....++.-.+ .......+.++..+.+++-++.-.+...+-. ++..+-..+.++..+....+++.....
T Consensus 469 l~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~-------a~~~v~s~e~el~~~~~~~~eer~ki~ 541 (581)
T KOG0995|consen 469 LKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKE-------AEELVKSIELELDRMVATGEEERQKIA 541 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110000 0001112233333333333333333333333 333334455666666666666665555
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHhH
Q 003810 420 QLLSTRDAELMAAKQEIIHLEREFSSYK 447 (794)
Q Consensus 420 ~~l~~~~~~l~~~q~e~~~le~Ele~~K 447 (794)
.++-.-.... -.-....+..+++.|
T Consensus 542 ~ql~~~i~~i---~~~k~~iqs~le~~k 566 (581)
T KOG0995|consen 542 KQLFAVIDQI---SDFKVSIQSSLENLK 566 (581)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 5554443333 333344444444433
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.15 E-value=1.3 Score=47.32 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEA 264 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~ 264 (794)
+.+++.+...+...+.....+..+++.+++++.+++.+....-..+..+ .-....++|..+++.++++...++..+..
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v--~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV--KDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555556666666666665555555321111101 11233455555555555555554444444
Q ss_pred HHHHHHHH
Q 003810 265 LQLSLQEK 272 (794)
Q Consensus 265 Lq~El~~l 272 (794)
|...+..+
T Consensus 115 l~~~~~~l 122 (239)
T COG1579 115 LMEEIEKL 122 (239)
T ss_pred HHHHHHHH
Confidence 44444433
No 78
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.14 E-value=1 Score=46.85 Aligned_cols=105 Identities=19% Similarity=0.363 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHH
Q 003810 93 VVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTR 172 (794)
Q Consensus 93 ~~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~ 172 (794)
.+.++.|.++|..+++.....+..|..+..+-..|..-+..+...+..|..++.... +-......+...+..+...+..
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~-kdK~~L~~~k~rl~~~ek~l~~ 104 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE-KDKQSLQNLKARLKELEKELKD 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999998888888888999999999999999999999999998544 3333444456666666666666
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 173 L---HKRAKQRIQEVQKEKDDLETRLRDV 198 (794)
Q Consensus 173 l---h~~~kqriqeLq~E~~~L~e~leE~ 198 (794)
| |.-..+|+..++.|.+.|...|+..
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 3337788888888888888777653
No 79
>PRK09039 hypothetical protein; Validated
Probab=96.12 E-value=1 Score=50.53 Aligned_cols=6 Identities=50% Similarity=0.883 Sum_probs=2.4
Q ss_pred HHHHhh
Q 003810 70 FLKSQF 75 (794)
Q Consensus 70 ~~~~~~ 75 (794)
|+-+-|
T Consensus 32 f~l~~f 37 (343)
T PRK09039 32 FLLTVF 37 (343)
T ss_pred HHHHHH
Confidence 333434
No 80
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.01 E-value=1.5 Score=45.15 Aligned_cols=161 Identities=21% Similarity=0.312 Sum_probs=88.1
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhcccCCC-CCcchhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 56 QLLGLVMELKLQNEFLKSQFEGLNTLRP-EDDGQESREVVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEA 134 (794)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~ 134 (794)
.|+--|-+|-+.|--|..+...++.--. -.+|.. +=..-+..|..|+-.+++.+ +.-+++..++++|+......
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na-~L~~e~~~L~~q~~s~Qqal----~~aK~l~eEledLk~~~~~l 79 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNA-QLAEEITDLRKQLKSLQQAL----QKAKALEEELEDLKTLAKSL 79 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777666655544431000 001111 11222444555555555555 33344778888888888777
Q ss_pred HHHHHHHHHHHHHHHH---HHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHH
Q 003810 135 DAKAQEFSAKLAEAQQ---KLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSA 211 (794)
Q Consensus 135 e~~~~~l~~ql~e~q~---kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ss 211 (794)
+.....|.++...++. .|-.+|.+|+..-..+...+.. .+.++++|..++.+|..++=+.+.-+..-...++.
T Consensus 80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~----lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e 155 (193)
T PF14662_consen 80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDG----LKKRSKELATEKATLQRQLCEFESLICQRDAILSE 155 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776654432 3555555555555533333333 36777777777777777776655555554444444
Q ss_pred HHHHHHHHHHHHHH
Q 003810 212 LQQELERTRQQAND 225 (794)
Q Consensus 212 Lq~qL~d~r~qleE 225 (794)
-+.+..++..-+++
T Consensus 156 ~t~~i~eL~~~ieE 169 (193)
T PF14662_consen 156 RTQQIEELKKTIEE 169 (193)
T ss_pred HHhhHHHHHHHHHH
Confidence 44444444444433
No 81
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=7.4 Score=48.67 Aligned_cols=103 Identities=21% Similarity=0.368 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003810 489 AEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEE 568 (794)
Q Consensus 489 ~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~~~r~~~e~le~~~e~ 568 (794)
.+..++.+..+.-+..+++.+.+-.. +-..++.+++..++.....+....+.|+..-+..+ .+..++|.|+.....
T Consensus 758 ke~~~~~k~~~~~i~~lE~~~~d~~~---~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e-~l~lE~e~l~~e~~~ 833 (1174)
T KOG0933|consen 758 KEKERALKKCEDKISTLEKKMKDAKA---NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYE-RLQLEHEELEKEISS 833 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhh---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44555555555555555444442222 33355556666666555555445555544433333 344555666553333
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003810 569 SSGQDVQKELQELKLQYKRLKDEHDSFRDLAD 600 (794)
Q Consensus 569 aa~~e~~kel~elq~~~~~L~~E~e~~r~~~~ 600 (794)
. .+++..+..++..|..++..++....
T Consensus 834 ~-----k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 834 L-----KQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 55556666666666666555554443
No 82
>PF13514 AAA_27: AAA domain
Probab=95.78 E-value=9.5 Score=49.26 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 003810 659 QILLLARQQAQREEELAQSQRHILALQEELEELERE--NRLHSQQEAMLKEEFRN 711 (794)
Q Consensus 659 ~~l~~a~~~a~re~El~~~~~~~~~Le~~~~e~~~~--~~~~~~q~~~Lk~eir~ 711 (794)
.+-.+...+..-+.++..+...+..++..+..+... ...+.++...++.+|..
T Consensus 897 ~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~ 951 (1111)
T PF13514_consen 897 ELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEE 951 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555444322 33444444455555443
No 83
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=7.2 Score=47.73 Aligned_cols=184 Identities=16% Similarity=0.211 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQP 257 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee 257 (794)
||....|+.|...|.+.+....+..+++.++..-|..||.-.+....+-+. ..++..-...++..+......
T Consensus 677 kQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q--------~~e~~~t~~eel~a~~~e~k~ 748 (970)
T KOG0946|consen 677 KQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ--------GAEASKTQNEELNAALSENKK 748 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh--------HHHhccCChHHHHHHHHHHHH
Confidence 466666777777776666555555555555555555555433333333221 122222233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003810 258 KEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKE 337 (794)
Q Consensus 258 ~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeele 337 (794)
.......|..++.+.......|+....++.-..-.. . .-...+..+-++...+++..+....+...+.++++.+.++-
T Consensus 749 l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~-~-~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~ 826 (970)
T KOG0946|consen 749 LENDQELLTKELNKKNADIESFKATQRSAELSQGSL-N-DNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLL 826 (970)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchh-h-hhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666555555555554444333111110 0 01111334444444466666666666666666766666655
Q ss_pred hHHHHH----HHhhcchhHHHHhhHHHHHHHHHHHHHHH
Q 003810 338 TTIAEM----EAASTGKEARFKAAVETVKGELAHLKREH 372 (794)
Q Consensus 338 rEnK~L----~~~s~~~~~~l~~~~E~~~~el~~l~kk~ 372 (794)
..+++. ...-..+.. +......+.+.+..++.+.
T Consensus 827 ~~tsa~a~~le~m~~~~~~-la~e~~~ieq~ls~l~~~~ 864 (970)
T KOG0946|consen 827 ERTSAAADSLESMGSTEKN-LANELKLIEQKLSNLQEKI 864 (970)
T ss_pred HHHHhhhhhhHHhhccccc-hhhHHHHHHHHHHHHHHHh
Confidence 444444 111111111 2234455566666666443
No 84
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.74 E-value=0.0026 Score=77.26 Aligned_cols=85 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAE---RASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCR 253 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~---~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke 253 (794)
.|.+++.|+..+..+..+...+|+... .+..++..+..++.++...+.+.. .....|..++..|++
T Consensus 330 lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~-----------~~~~~l~~e~~~L~e 398 (713)
T PF05622_consen 330 LKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEES-----------RRADKLEFENKQLEE 398 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 566667777666666665555544443 233333344444444443333322 233344555555555
Q ss_pred hcchHHHHHHHHHHHHHHH
Q 003810 254 SFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 254 ~lee~e~a~~~Lq~El~~l 272 (794)
.+........+|..+++.+
T Consensus 399 k~~~l~~eke~l~~e~~~L 417 (713)
T PF05622_consen 399 KLEALEEEKERLQEERDSL 417 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444
No 85
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.69 E-value=9.2 Score=48.42 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 599 ADRMMEEKDNEISRLLDDNKNLHR 622 (794)
Q Consensus 599 ~~~~l~eke~el~kL~~e~~~l~~ 622 (794)
....+..+..+|..|.+++.++..
T Consensus 1722 ~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1722 NEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHH
Confidence 334455555555555555554443
No 86
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.53 E-value=0.0035 Score=76.18 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQ 222 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~q 222 (794)
..+++.|...+.+++..+..+.....+|.+++..++..
T Consensus 185 ~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~ 222 (713)
T PF05622_consen 185 VAERDELAQRCHELEKQISDLQEEKESLQSENEELQER 222 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcc
Confidence 44455555444444444444555555555544444433
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=9.2 Score=46.64 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 244 LRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKAT 323 (794)
Q Consensus 244 L~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~ 323 (794)
|...+-.|...|++++..+++|..-+.|...++..-+..+...- -.+-....++..+.+++.++.....++.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~--------~q~e~~isei~qlqarikE~q~kl~~l~ 506 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVT--------KQRELMISEIDQLQARIKELQEKLQKLA 506 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445555555566666666666666666555555333333111 1122235778888888888888766666
Q ss_pred HHHHHHHHHHH
Q 003810 324 ETISSLQVLVA 334 (794)
Q Consensus 324 ~~~~rLqeeLe 334 (794)
-..+.|...+-
T Consensus 507 ~Ekq~l~~qlk 517 (1118)
T KOG1029|consen 507 PEKQELNHQLK 517 (1118)
T ss_pred hHHHHHHHHHH
Confidence 66666655554
No 88
>PRK10698 phage shock protein PspA; Provisional
Probab=95.26 E-value=4.8 Score=42.51 Aligned_cols=126 Identities=12% Similarity=0.155 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 212 LQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQ 291 (794)
Q Consensus 212 Lq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq 291 (794)
+.+-++++=.++++-. .++.-.++.+.+.+..++..+...-.....+.+++........+|..+...++.+-.
T Consensus 11 i~a~in~~ldkaEDP~-------k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~ 83 (222)
T PRK10698 11 VNANINALLEKAEDPQ-------KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEK 83 (222)
T ss_pred HHhHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3444555555555422 377888888888999998888888888899999999999999999998887776555
Q ss_pred HhHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003810 292 ASIAEL----SAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEME 344 (794)
Q Consensus 292 ~~L~E~----K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~ 344 (794)
+.|+-. |..+...+..++.++........++...+.+|+..|.+..+.-.+|.
T Consensus 84 EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 84 EDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 533333 44557899999999999999999999999999999998888888884
No 89
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.26 E-value=2.5 Score=41.77 Aligned_cols=86 Identities=15% Similarity=0.326 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPK 258 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~ 258 (794)
.+++.+..+...+...+..+..++..+...+..++.+|.+++..+++..... +..-.|...+..|.+.|+..
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~--------~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK--------SNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HhHHHHHhhHHHHHHHHHHH
Confidence 4444445555555555555555556666666666666666666665433211 11224444444454444444
Q ss_pred HHHHHHHHHHHHHH
Q 003810 259 EDALEALQLSLQEK 272 (794)
Q Consensus 259 e~a~~~Lq~El~~l 272 (794)
...+.....-+...
T Consensus 93 e~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 93 EKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 44443333333333
No 90
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.05 E-value=5.4 Score=41.86 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=31.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 291 QASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 291 q~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
-..++..+++++.++-.|++.++-..- .+..|...|+++..+|..|
T Consensus 149 Neei~~v~~~~~~e~~aLqa~lkk~e~-------~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 149 NEEIAQVRSKHQAELLALQASLKKEEM-------KVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 345667777777888888777776655 5566666666666666666
No 91
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.98 E-value=5.6 Score=41.74 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQAS----IAELSAKHQKNLESLEAQ 311 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~----L~E~K~k~q~e~E~LEa~ 311 (794)
++.-.++.+..++..++..+.........+.+++........+|......++.+-.+. ..+.+..+...+..++.+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~ 107 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERE 107 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888889999998888888889999999999999999988888777544442 223445556888888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 312 LADAVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 312 ~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
+......+.++...+..|+..|.+....-.+|
T Consensus 108 ~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 108 LAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888777766666
No 92
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.81 E-value=7.9 Score=42.57 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003810 303 KNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEA 345 (794)
Q Consensus 303 ~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~ 345 (794)
.+.+.+-..+-++......+...+..++..|.+++..++.|.+
T Consensus 207 keade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 207 KEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666667777777777888888888888888754
No 93
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.74 E-value=6.2 Score=41.10 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 212 LQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQ 291 (794)
Q Consensus 212 Lq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq 291 (794)
+.+-++++=.++++-. ..|.-.++.+...+..++..+.........|.+++.........|..+...++..-.
T Consensus 10 ~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~ 82 (221)
T PF04012_consen 10 VKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGR 82 (221)
T ss_pred HHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344444444554311 478889999999999999999999999999999999999999999999887775544
Q ss_pred H----hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003810 292 A----SIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEME 344 (794)
Q Consensus 292 ~----~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~ 344 (794)
+ .....+..+...+..++..+........++...+..+...|.++.+....|.
T Consensus 83 edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 83 EDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2233344456888888888888888888888888888888888888888774
No 94
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.70 E-value=17 Score=45.94 Aligned_cols=13 Identities=31% Similarity=0.233 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHh
Q 003810 656 AEQQILLLARQQA 668 (794)
Q Consensus 656 ~e~~~l~~a~~~a 668 (794)
.++.++.+|=.+|
T Consensus 819 GE~~~~sLalrLA 831 (908)
T COG0419 819 GERFLASLALRLA 831 (908)
T ss_pred hHHHHHHHHHHHH
Confidence 4556665554433
No 95
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.32 E-value=7.5 Score=40.23 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQA 223 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~ql 223 (794)
..|...|...++-.+...+++...+..|..++..++..+
T Consensus 21 ~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal 59 (193)
T PF14662_consen 21 ADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL 59 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777666666554333
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.12 E-value=14 Score=42.59 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 481 EKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLD 531 (794)
Q Consensus 481 E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~ 531 (794)
...++....++..+...++..+...+..+++....-..++..|.+++....
T Consensus 198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555555666666666555555554444444444444444444443333
No 97
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.99 E-value=13 Score=41.57 Aligned_cols=133 Identities=15% Similarity=0.203 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHH---------------hhcchhHHHHhhHHHHHHHHHHHHH
Q 003810 306 ESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEA---------------ASTGKEARFKAAVETVKGELAHLKR 370 (794)
Q Consensus 306 E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~---------------~s~~~~~~l~~~~E~~~~el~~l~k 370 (794)
..+..-+.+......++...+..|+..+.++.-.||.|.. ...++..++...+ +++..
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL-------Ek~~~ 140 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL-------EKLRE 140 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH-------HHHHH
Confidence 3444444555555556666666777777777777776631 1112333333444 44444
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhHHHHHHHHhHHHh------HHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003810 371 EHEKEKESWEAAS---QAFRKKLEIAESNCIHTEIEAAKLRSQLES------ELSVQNQLLSTRDAELMAAKQEIIHLER 441 (794)
Q Consensus 371 k~ek~~~e~k~~~---~el~~eLe~aE~~~~r~e~e~~~lk~e~E~------el~~~~~~l~~~~~~l~~~q~e~~~le~ 441 (794)
+.+..--++++.+ +++..+++..-.++.|+..++..+=+.-+. .+=..|.-+..+..++ +.+..-+..
T Consensus 141 q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~---qeE~~l~k~ 217 (319)
T PF09789_consen 141 QIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQL---QEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4444433344433 455568888888999999999887665433 3334444454444444 888888888
Q ss_pred HHhHhHH
Q 003810 442 EFSSYKI 448 (794)
Q Consensus 442 Ele~~K~ 448 (794)
.+..||.
T Consensus 218 ~i~KYK~ 224 (319)
T PF09789_consen 218 TINKYKS 224 (319)
T ss_pred HHHHHHH
Confidence 8888885
No 98
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.93 E-value=9.1 Score=39.75 Aligned_cols=173 Identities=15% Similarity=0.201 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003810 318 DRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNC 397 (794)
Q Consensus 318 ~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe~aE~~~ 397 (794)
.+-.+...+..++..+..+..||+.|..-+..... ..-.++....++..+-..|..++.-|+..+-.+++.....+...
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~k-AL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEK-ALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678899999999999999999532222111 12355666777777777787777777777777777776666555
Q ss_pred hhhHHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHHHHH
Q 003810 398 IHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEAL 477 (794)
Q Consensus 398 ~r~e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~l 477 (794)
...+.++..++.++.. .+.|...|. ..| -.+|..-+
T Consensus 92 k~~~~el~k~~~~l~~------------------------------------L~~L~~dkn-----L~e---ReeL~~kL 127 (194)
T PF15619_consen 92 KDKDEELLKTKDELKH------------------------------------LKKLSEDKN-----LAE---REELQRKL 127 (194)
T ss_pred HHHHHHHHHHHHHHHH------------------------------------HHHHHHcCC-----chh---HHHHHHHH
Confidence 5555555554443322 122333333 111 12244444
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 478 KETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNT 535 (794)
Q Consensus 478 ~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~ 535 (794)
..++..|+.+......+...+.-....+.+++........++...+..+..++..+..
T Consensus 128 ~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 128 SQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555566666665566666666665555555555666666665555553
No 99
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.89 E-value=22 Score=44.10 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 174 HKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 174 h~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
|..+..++.+++.-+.--...+.+.+..+..+..++..++-+...|-.++++
T Consensus 440 h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~ 491 (980)
T KOG0980|consen 440 HADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTES 491 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4445555555444444433334444444444444444444444444444443
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.53 E-value=24 Score=43.39 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 99 LRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLA 146 (794)
Q Consensus 99 l~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~ 146 (794)
|..+|.-|.-.+.--++.+....++.++|.....+..+.+..++.++.
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~ 79 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERK 79 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555554444444444444444444444444444444444444443
No 101
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.51 E-value=7.7 Score=37.56 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 180 RIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 180 riqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
.+..|+.++..+..........+..+...+.....-...+...|+.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~ 49 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYER 49 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777666666666666666666666666666664
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.41 E-value=21 Score=42.36 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQML 276 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L 276 (794)
++.+....+...++.++..++..++.++.|+.+.+.+.-++
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666666664433
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.24 E-value=7.8 Score=43.13 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhhhhh
Q 003810 95 DVKELRERIESLSKEL 110 (794)
Q Consensus 95 ~v~el~eq~e~l~r~~ 110 (794)
++++|...|...++.+
T Consensus 76 ~c~EL~~~I~egr~~~ 91 (325)
T PF08317_consen 76 SCRELKKYISEGRQIF 91 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777777666664
No 104
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.08 E-value=17 Score=40.29 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHH---HHHHHHH
Q 003810 303 KNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREH---EKEKESW 379 (794)
Q Consensus 303 ~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~---ek~~~e~ 379 (794)
..+..|...+..+.....+-++.|.+|..+|-.+....|.+-+ ..|.+..-+...+.-+ ..++.++
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~-----------EnEeL~q~L~~ske~Q~~L~aEL~el 281 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAA-----------ENEELQQHLQASKESQRQLQAELQEL 281 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777777777777777666666632 2223333333333333 3345566
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003810 380 EAASQAFRKKLEIAESNC 397 (794)
Q Consensus 380 k~~~~el~~eLe~aE~~~ 397 (794)
+..+.+..+-|..++.+.
T Consensus 282 qdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 282 QDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666665554443
No 105
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.89 E-value=18 Score=39.94 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 003810 381 AASQAFRKKLEIAESNCIHTEIEAAKLRS 409 (794)
Q Consensus 381 ~~~~el~~eLe~aE~~~~r~e~e~~~lk~ 409 (794)
....++..++.....+.+.+...+..++.
T Consensus 221 ~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 221 KKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666566666666666665554
No 106
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.75 E-value=23 Score=40.91 Aligned_cols=69 Identities=14% Similarity=0.303 Sum_probs=48.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH
Q 003810 101 ERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 101 eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l 173 (794)
+++++.++.+++-...+.........|...+.+.+..+..++.++.+...++.+- ...+.+++..+..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~----~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKL----RKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhhHHHHHHHHHHH
Confidence 6677777766555555555666666677777777777777777777777777766 77777777777777
No 107
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.75 E-value=33 Score=42.72 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 296 ELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 296 E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
+.+..+...++.+.......+++.......+..+..++.-+..+...|
T Consensus 466 ~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~l 513 (980)
T KOG0980|consen 466 EENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEEL 513 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444333333333
No 108
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.75 E-value=4.1 Score=38.34 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 003810 180 RIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQP 257 (794)
Q Consensus 180 riqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee 257 (794)
-+.+|..+++.|...+..+..........+..|++++.+++..++.+-- .|..++...-+-+.+...+.-++.+
T Consensus 31 S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~----ak~~l~~r~~k~~~dka~lel~l~e 104 (107)
T PF09304_consen 31 SQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ----AKLELESRLLKAQKDKAILELKLAE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 3334488888899988888888888899999999999999999886433 5668888888888887777665543
No 109
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.67 E-value=32 Score=42.40 Aligned_cols=116 Identities=21% Similarity=0.239 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 117 RGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLR 196 (794)
Q Consensus 117 l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~le 196 (794)
+..+..++++++..+...-....+|.....++... .+.++-++. +| +..|+++..--.-|-..+.
T Consensus 36 i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~----~~~~e~~~~-------~l----r~e~ke~K~rE~rll~dys 100 (717)
T PF09730_consen 36 ILELENELKQLRQELSNVQAENERLSQLNQELRKE----CEDLELERK-------RL----REEIKEYKFREARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HH----HHHHHHHHHHHHHHhhhhH
Confidence 34488888888888888888888888776654443 222233333 22 2333333333344556677
Q ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 003810 197 DVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDAL 262 (794)
Q Consensus 197 E~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~ 262 (794)
|+|+....++|+++.|.+ .|.+ =+.+...++.|.++.+-|..+++++..-.
T Consensus 101 elEeENislQKqvs~Lk~------sQve---------fE~~Khei~rl~Ee~~~l~~qlee~~rLk 151 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQ------SQVE---------FEGLKHEIKRLEEEIELLNSQLEEAARLK 151 (717)
T ss_pred HHHHHHHHHHHHHHHHHH------hHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888654 1222 13667777888888888888887776533
No 110
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.06 E-value=17 Score=42.32 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQEL 216 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL 216 (794)
.+++.+++.++..+...+.+.--.+..+.+++..++.++
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 345556666666666666555555545555555444443
No 111
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.87 E-value=36 Score=42.07 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 110 LQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKL 145 (794)
Q Consensus 110 ~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql 145 (794)
.+....+..-+...+..++....++|.++..+..+-
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344455577777778887777777777775543
No 112
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.73 E-value=21 Score=38.29 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCchhHHHHHH
Q 003810 695 NRLHSQQEAMLKEEFRNMERSKKREGVDMTYLKNVI 730 (794)
Q Consensus 695 ~~~~~~q~~~Lk~eir~ler~~~re~~n~eYLKNV~ 730 (794)
+.++..|...|+.+|..+.....-...|.-|--||-
T Consensus 184 nk~lq~QL~~L~~EL~~~kde~k~T~~D~~h~en~~ 219 (246)
T PF00769_consen 184 NKRLQEQLKELKSELEQLKDEEKQTQLDIIHAENVR 219 (246)
T ss_dssp -HHHHHHHHHHHHHHHTTB-CCG--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHH
Confidence 556777777888888654322222335666767754
No 113
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.67 E-value=8.2 Score=37.16 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQ 256 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~le 256 (794)
+...|+.++.|+..+...+..++.....+...+..+..+...++..... ...|+..+..|...++.+-+-+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~--------~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKE--------VEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466677788888888888888888888888888877777766554433 24788888888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 257 PKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 257 e~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
+..+.+..|+..+.++ ..-++.+++
T Consensus 93 EK~E~veEL~~Dv~Dl---K~myr~Qi~ 117 (120)
T PF12325_consen 93 EKSEEVEELRADVQDL---KEMYREQID 117 (120)
T ss_pred chHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 8888888888888888 444444443
No 114
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.44 E-value=40 Score=40.84 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 93 VVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 93 ~~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee 155 (794)
..-+.+|.++|+.+...+++-...++.+...+..+.....+......+++.++. +..++-+-
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~l 388 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 445666777777777777666667777777777777777777777777777666 55554433
No 115
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.38 E-value=27 Score=38.85 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAN 224 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qle 224 (794)
+.+...|...++.+..-+..+......|..++..++....
T Consensus 162 ~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 162 QEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444555555444444433
No 116
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.32 E-value=51 Score=41.79 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003810 132 EEADAKAQEFSAKLAEAQQKLGQEIKG 158 (794)
Q Consensus 132 ~~~e~~~~~l~~ql~e~q~kl~ee~~~ 158 (794)
..+.+.+.+=+.++.|...=|+++|.=
T Consensus 179 e~A~ktiekKetKlkEi~~lL~eeI~P 205 (1174)
T KOG0933|consen 179 EAAEKTIEKKETKLKEINTLLREEILP 205 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 344555556666677666666666543
No 117
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.24 E-value=18 Score=40.28 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 003810 217 ERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDAL 262 (794)
Q Consensus 217 ~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~ 262 (794)
=+||.++-++.. ..|...+.-|+.+...|...++-...-+
T Consensus 135 YeWR~kllegLk------~~L~~~~~~l~~D~~~L~~~~~~l~~~~ 174 (312)
T smart00787 135 YEWRMKLLEGLK------EGLDENLEGLKEDYKLLMKELELLNSIK 174 (312)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555554443 4444444555555554444444444433
No 118
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.93 E-value=25 Score=37.48 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHH
Q 003810 235 QQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQA----SIAELSAKHQKNLESLEA 310 (794)
Q Consensus 235 e~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~----~L~E~K~k~q~e~E~LEa 310 (794)
.+|+-.++....++..++..+...-....++..++..+......|..+...++.+-.+ ...+.+..+...+..+.+
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~ 106 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEA 106 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888888899999999988888888887766644443 445666777788888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003810 311 QLADAVSDRSKATETISSLQVLVAEKETTIAEME 344 (794)
Q Consensus 311 ~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~ 344 (794)
.+..+...+.++...+..|...|.+++.....+.
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888877777773
No 119
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.82 E-value=13 Score=45.09 Aligned_cols=119 Identities=20% Similarity=0.303 Sum_probs=68.0
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHH
Q 003810 160 EDKYTELDSKFTRLHKRAKQRIQEVQKE-------KDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDI 232 (794)
Q Consensus 160 ~~~~~el~~~~~~lh~~~kqriqeLq~E-------~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~ 232 (794)
.....+.+.+|.-+. +++.+.+.| .+.|...|..-...+-.......+|+-.|.-+-.++....+ +
T Consensus 62 ~aqk~d~E~ritt~e----~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-a-- 134 (916)
T KOG0249|consen 62 MAQKEDMEERITTLE----KRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-A-- 134 (916)
T ss_pred HhhhcccccccchHH----HHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-h--
Confidence 455555555555553 455555555 34444444444444445555555666666655555555444 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 233 ERQQLRSANNKLRDNIEELCRS---FQPKEDALEALQLSLQEKDQMLEDMRTLLQAAE 287 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~---lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~ 287 (794)
..|..+--.|..+.+.+... .....+...+|-.+++.+++.|.+.+..+.-..
T Consensus 135 --e~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemne 190 (916)
T KOG0249|consen 135 --ETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNE 190 (916)
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35556666666666555443 444555778888888888888888666655333
No 120
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.79 E-value=47 Score=40.47 Aligned_cols=43 Identities=5% Similarity=0.077 Sum_probs=17.9
Q ss_pred chhHHHHHHHHhhhcCccccchHHHHHhhCCCHHHHHHHHHHHhc
Q 003810 722 DMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYLA 766 (794)
Q Consensus 722 n~eYLKNV~l~fl~~~e~~~llpvi~tlL~fsp~e~~~~~~a~~~ 766 (794)
|-+|-+|+|-.|+..-..+ |=++++--.+++.....+...++.
T Consensus 588 D~~~r~~l~~~~~~~~~~Q--vIils~d~e~~~~~~~~l~~~i~~ 630 (650)
T TIGR03185 588 DSSHRENLVVNYFPKASHQ--VLLLSTDEEVDEKHYNLLKPNISH 630 (650)
T ss_pred ChHHHHHHHHHHhhccCCe--EEEEechHhhCHHHHHHHHHHhhh
Confidence 4445555554454322222 223334444455444444444433
No 121
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.65 E-value=19 Score=35.67 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERT 219 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~ 219 (794)
++|-.|+.++.......+.+.-......+.+.+|..++..+
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l 64 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL 64 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433344444444444444333
No 122
>PF13514 AAA_27: AAA domain
Probab=90.61 E-value=65 Score=41.82 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003810 191 LETRLRDVGETAERASSQCSALQQELERTRQQAN 224 (794)
Q Consensus 191 L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qle 224 (794)
...++.........+...+..++.++..+...++
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 273 (1111)
T PF13514_consen 240 GAERLEQLEEELAEAQAQLERLQEELAQLEEELD 273 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666666666665555554
No 123
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.60 E-value=24 Score=36.74 Aligned_cols=55 Identities=9% Similarity=0.250 Sum_probs=37.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 289 KRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 289 kkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
.....||..-..+..++-.|..+++........+.+.+.....+|-.....++.|
T Consensus 54 ~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 54 DTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334577777777788888888777777766666666666666666555555555
No 124
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.48 E-value=32 Score=38.01 Aligned_cols=213 Identities=18% Similarity=0.183 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHhHH
Q 003810 265 LQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSD----RSKATETISSLQVLVAEKETTI 340 (794)
Q Consensus 265 Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~----~~kl~~~~~rLqeeLeelerEn 340 (794)
|+.+|.-+..+++.++..-+ +--.++-.+++.+.....++... -..+.+++.....++..|..||
T Consensus 4 Lq~eia~LrlEidtik~q~q-----------ekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aEN 72 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQ-----------EKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAEN 72 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 45555555555555444443 22234445555555555555441 1334456666666666666666
Q ss_pred HHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh-------HHHh
Q 003810 341 AEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRS-------QLES 413 (794)
Q Consensus 341 K~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe~aE~~~~r~e~e~~~lk~-------e~E~ 413 (794)
..|-. .++.-++.-.+++.+++-.+..+-+++. ..+......+.++.-+...+. -+..
T Consensus 73 t~L~S-----------kLe~EKq~kerLEtEiES~rsRLaaAi~----d~dqsq~skrdlelafqr~rdEw~~lqdkmn~ 137 (305)
T PF14915_consen 73 TMLNS-----------KLEKEKQNKERLETEIESYRSRLAAAIQ----DHDQSQTSKRDLELAFQRARDEWVRLQDKMNS 137 (305)
T ss_pred HHHhH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 66532 2222223333333333333222222221 122222222222222222222 2222
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003810 414 ELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDK 493 (794)
Q Consensus 414 el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~l~E~E~~l~~a~~er~r 493 (794)
+++........--..|..+....++|+.+|-. +...|..|+ .+ |+..- |
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~----trdaLrEKt----------L~--lE~~Q---------------r 186 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHH----TRDALREKT----------LA--LESVQ---------------R 186 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH----------HH--HHHHH---------------H
Confidence 44433333344445566678888888888766 555555555 10 11111 1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 494 ALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMN 534 (794)
Q Consensus 494 a~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~ 534 (794)
-..+.|.++++++.-.+--...+..+-.+-.+++.+|..+.
T Consensus 187 dL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Qlq 227 (305)
T PF14915_consen 187 DLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQ 227 (305)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334555666655555555666666666677777776665
No 125
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.45 E-value=59 Score=41.10 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERT 219 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~ 219 (794)
.+.+|.+-+.|++...-.+..+-..-..+.+.+..|+++..++
T Consensus 333 ~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l 375 (1200)
T KOG0964|consen 333 VKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDL 375 (1200)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666665555556666666666554433
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.33 E-value=25 Score=36.63 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 238 RSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 238 e~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
...++.+...+..|+-..+.....+..|.++.+.+
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555
No 127
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.07 E-value=31 Score=37.22 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 003810 171 TRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEE 250 (794)
Q Consensus 171 ~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~ee 250 (794)
+-+|.+.||.+.+.+.|+..+.+--.|.+.. |.+||.++..+.. .|+..++.|.-+.+.
T Consensus 19 k~l~~~ykq~f~~~reEl~EFQegSrE~Eae----------lesqL~q~etrnr-----------dl~t~nqrl~~E~e~ 77 (333)
T KOG1853|consen 19 KLLHHEYKQHFLQMREELNEFQEGSREIEAE----------LESQLDQLETRNR-----------DLETRNQRLTTEQER 77 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH----------HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 4568889999999988888777654444332 3445554444432 356666777777777
Q ss_pred HHHhcchHHHH
Q 003810 251 LCRSFQPKEDA 261 (794)
Q Consensus 251 Lke~lee~e~a 261 (794)
++++++-....
T Consensus 78 ~Kek~e~q~~q 88 (333)
T KOG1853|consen 78 NKEKQEDQRVQ 88 (333)
T ss_pred HHHHHHHHHHH
Confidence 77766655543
No 128
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=89.23 E-value=30 Score=35.99 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH---HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 208 QCSALQQELERTRQQANDALKAMDIERQQLRSANNKL---RDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 208 ~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL---~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
.+..+..||.+++...++.-+ ..+.+.++| ..+++...++.+..++.+.+|..++..+...+..+...-+
T Consensus 61 ~~e~~e~qLkEAk~iaE~adr-------K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee 133 (205)
T KOG1003|consen 61 KMEAQEAQLKEAKHIAEKADR-------KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEE 133 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 344455556666666665444 344444444 4667777777777777777777777766555554433333
No 129
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.09 E-value=36 Score=37.92 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 003810 187 EKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRD 246 (794)
Q Consensus 187 E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~ 246 (794)
+++.+.+.|.+....+....+.+..++.+|......+++.+. .+..+.+.++.+..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~----~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN----KKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 555555555555555555555566666666655555554333 33444444444444
No 130
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.96 E-value=59 Score=40.19 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLED 278 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~ 278 (794)
.|......+..++..+...+....-.+..++.++..+..++..
T Consensus 292 ~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~ 334 (754)
T TIGR01005 292 RLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS 334 (754)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555666666777666555433
No 131
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.96 E-value=64 Score=39.38 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 003810 577 ELQELKLQYKRLKDEHDSFRDL---ADRMMEEKDNEISRLLDDNKNLHRSLE 625 (794)
Q Consensus 577 el~elq~~~~~L~~E~e~~r~~---~~~~l~eke~el~kL~~e~~~l~~~L~ 625 (794)
++..|+.++.+....+.-+|.. ++..+...-+++..|+-++..|+..+.
T Consensus 476 ~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e 527 (716)
T KOG4593|consen 476 ELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLE 527 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555443 346678889999999999988887665
No 132
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.67 E-value=27 Score=34.62 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQA 223 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~ql 223 (794)
+.-...|.+.|+-.+.....+..+..+....+..++..+
T Consensus 23 e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el 61 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECLILDAENSKAEIETLEEEL 61 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334443334444444444444444444333333
No 133
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.55 E-value=22 Score=33.56 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=36.0
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 003810 199 GETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLE 277 (794)
Q Consensus 199 e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~ 277 (794)
+.....+...+.+|+..|++.|...++-.. +|+.|+..++.|+...+.... .+..|+..++++...++
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~k----qkd~L~~~l~~L~~q~~s~~q-------r~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAK----QKDQLRNALQSLQAQNASRNQ-------RIAELQAKIDEARRNLE 75 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHH----hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 444556666777777777777766655333 556666666655555555544 44445555555533333
No 134
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.35 E-value=37 Score=35.78 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003810 357 AVETVKGELAHLKREHEKEKE 377 (794)
Q Consensus 357 ~~E~~~~el~~l~kk~ek~~~ 377 (794)
.++.++.++..+.+++.....
T Consensus 144 kL~~ANeei~~v~~~~~~e~~ 164 (207)
T PF05010_consen 144 KLEKANEEIAQVRSKHQAELL 164 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 344444455555444444433
No 135
>PRK11281 hypothetical protein; Provisional
Probab=88.07 E-value=97 Score=40.36 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 97 KELRERIESLSKE---LQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 97 ~el~eq~e~l~r~---~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee 155 (794)
+.+..+++++++. ....|...+.++..+..+...... .++.+.|..++..+-.++.+.
T Consensus 39 ~~iq~~l~~~~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~-~~~~~~L~k~l~~Ap~~l~~a 99 (1113)
T PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQ-KEETEQLKQQLAQAPAKLRQA 99 (1113)
T ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHH
Confidence 3455677777666 112444445566666666554432 233345555555555554444
No 136
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.97 E-value=25 Score=34.60 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 302 QKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEA 381 (794)
Q Consensus 302 q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~ 381 (794)
....+.+...+..+.....++...+.+|...++.+++++..+... .-.+...+..+...++..+.++..
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~-----------~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEK-----------ERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777788888888888888888888888777765431 111223444455555555555555
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhHH
Q 003810 382 ASQAFRKKLEIAESNCIHTEIEAAKLRSQL 411 (794)
Q Consensus 382 ~~~el~~eLe~aE~~~~r~e~e~~~lk~e~ 411 (794)
...-+........-++++.+.++.+|+..+
T Consensus 120 lk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 120 LKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555566666677766666543
No 137
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.70 E-value=46 Score=36.19 Aligned_cols=142 Identities=19% Similarity=0.264 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHH
Q 003810 473 LEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAW----EKNL 548 (794)
Q Consensus 473 Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~----e~~L 548 (794)
++..+..++.+++..+.....+..+++.+.-=.+++---+..++.++..+ +..+...++.+...+ +..+
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rq-------lq~lk~~qqdEldel~e~~~~el 151 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQ-------LQQLKDSQQDELDELNEMRQMEL 151 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777666554444444444444444444 444433222222221 3345
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 003810 549 QTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLE 625 (794)
Q Consensus 549 ~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~E~e~~r~~~~~~l~eke~el~kL~~e~~~l~~~L~ 625 (794)
..+...|....+.+-..+-..+-..+..-+...-.....+..++..+| ..+++.+.+|..|+++++.|+....
T Consensus 152 ~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r----e~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 152 ASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR----EEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555555554444322211223333334444455555666777666 6678888899999999999987653
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.19 E-value=8.5 Score=39.63 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 237 LRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 237 Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
....+..|.+++..|.-.+.-.+..+..|+.+-..+ +++|-....
T Consensus 142 k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L---v~Rwm~~k~ 186 (194)
T PF08614_consen 142 KNKANEILQDELQALQLQLNMLEEKLRKLEEENREL---VERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344455666667777777777777777777777777 777644443
No 139
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.80 E-value=26 Score=33.74 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 514 AALNNANQQIKSIEIKLDSMN---TKLQVEKEAWEKNLQTVEESWRLRC 559 (794)
Q Consensus 514 ~~~ee~r~qir~lE~~l~~~~---~~~~~~kk~~e~~L~~le~~~r~~~ 559 (794)
.....++..+.+++.+.+.+- .+-....++++.|+.++..-||..+
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666665554 2223344445555555554444433
No 140
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.75 E-value=80 Score=37.97 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHhHHHHHH-HhhcchhHHHHhhHHHHHHHHHHHHHHHHHH
Q 003810 303 KNLESLEAQLADAVS----DRSKATETISSLQVLVAEKETTIAEME-AASTGKEARFKAAVETVKGELAHLKREHEKE 375 (794)
Q Consensus 303 ~e~E~LEa~~~E~~~----~~~kl~~~~~rLqeeLeelerEnK~L~-~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~ 375 (794)
..+..+....+++.. .++..-.++..|...|..++.....+. ..+.|+...+..-+..++..+..+...++..
T Consensus 140 ~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 140 EEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444 344444577777777777777777773 4455555444445555556655555555544
No 141
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.70 E-value=71 Score=37.37 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003810 127 LRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL---HKRAKQRIQEVQKEKDDLETRLRDVGETAE 203 (794)
Q Consensus 127 l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l---h~~~kqriqeLq~E~~~L~e~leE~e~~~~ 203 (794)
+....+..--..+.|..+++++ .++++.|++|++.+-.+.....++ ..-+|++-+.+-.-+..|...++..|+.+.
T Consensus 269 i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~ 347 (622)
T COG5185 269 INTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIK 347 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3333333334445555566633 467777888888887777666666 122555555555555555555555444444
Q ss_pred HHHhhhHHH
Q 003810 204 RASSQCSAL 212 (794)
Q Consensus 204 ~lsk~~ssL 212 (794)
.+......|
T Consensus 348 ~L~~~~d~L 356 (622)
T COG5185 348 ALQSNIDEL 356 (622)
T ss_pred HHHhhHHHH
Confidence 444333333
No 142
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.44 E-value=1.1e+02 Score=39.27 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=14.9
Q ss_pred cCCCCCCCch-HHHHHHHHHhhhh
Q 003810 45 DEHGSSNDNN-EQLLGLVMELKLQ 67 (794)
Q Consensus 45 ~g~~~~~~~~-~~~~~~~~~~~~~ 67 (794)
|++|-+=.|. ++|-.||--++++
T Consensus 151 ~~~grvVStKk~dl~~vv~~f~I~ 174 (1074)
T KOG0250|consen 151 SANGRVVSTKKEDLDTVVDHFNIQ 174 (1074)
T ss_pred hccCccccccHHHHHHHHHHhCcC
Confidence 6666666665 6777777655554
No 143
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.40 E-value=9.7 Score=39.21 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 203 ERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTL 282 (794)
Q Consensus 203 ~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~ 282 (794)
..+...+..++.++...+..+......+ ..+...+..|...+..+...+.+.....+.|+-|+..++.++..+..+
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l----~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSEKERRL----AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp -----------------------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554444433 456666666677777777777777767777777777776666554444
Q ss_pred HHH
Q 003810 283 LQA 285 (794)
Q Consensus 283 lq~ 285 (794)
+..
T Consensus 167 ~~~ 169 (194)
T PF08614_consen 167 LRK 169 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 144
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.13 E-value=89 Score=37.94 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 114 KETRGAAEKALEHLRVQYEEADAKAQEFSAKLAE 147 (794)
Q Consensus 114 k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e 147 (794)
.+.+..+...|+.+...+...+..++.+...+..
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q 360 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQ 360 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555443
No 145
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.91 E-value=21 Score=35.14 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 112 EEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQ 149 (794)
Q Consensus 112 k~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q 149 (794)
......+.+...+..+.....-....+.+|..++.+++
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e 86 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELE 86 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33355555666666666655555555555554444333
No 146
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.73 E-value=64 Score=35.93 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhHHHH-HHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHH
Q 003810 189 DDLETRLRDVGETAE-RASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDA-LEALQ 266 (794)
Q Consensus 189 ~~L~e~leE~e~~~~-~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a-~~~Lq 266 (794)
-.+...-+-.|+-+. .+-|.+..|+.+-.++-..++.+=.. ....|...+.+|+.++..|...|+..++. +.+|+
T Consensus 65 v~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~---ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~ 141 (310)
T PF09755_consen 65 VRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEF---LTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQ 141 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333444455556665 88888999999888887777632222 34789999999999999999999988874 68888
Q ss_pred HHHHHHHHH
Q 003810 267 LSLQEKDQM 275 (794)
Q Consensus 267 ~El~~l~~~ 275 (794)
..+..+..+
T Consensus 142 k~i~~Le~e 150 (310)
T PF09755_consen 142 KKIERLEKE 150 (310)
T ss_pred HHHHHHHHH
Confidence 888887433
No 147
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.48 E-value=42 Score=36.07 Aligned_cols=22 Identities=18% Similarity=0.438 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 003810 134 ADAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 134 ~e~~~~~l~~ql~e~q~kl~ee 155 (794)
+++..+.|+.+|..++..+..-
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a 24 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRA 24 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444
No 148
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=85.42 E-value=66 Score=35.80 Aligned_cols=139 Identities=20% Similarity=0.287 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQE---IKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLR 196 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee---~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~le 196 (794)
...-+.+|..-|++.....+++..++...+.++... .+.+...+.......++| -.=|++||..+..+.+...
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KL----E~LCRELQk~Nk~lkeE~~ 95 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKL----ESLCRELQKQNKKLKEESK 95 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888887777765444 333333333333333333 2445777777666554332
Q ss_pred H----HhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 003810 197 D----VGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSL 269 (794)
Q Consensus 197 E----~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El 269 (794)
. .+.....+ ...++.-|.+...++++... .+..+......|...+..+-++++--+..+..+-+..
T Consensus 96 ~~~~eee~kR~el---~~kFq~~L~dIq~~~ee~~~----~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~k 165 (309)
T PF09728_consen 96 RRAREEEEKRKEL---SEKFQATLKDIQAQMEEQSE----RNIKLREENEELREKLKSLIEQYELREEHFEKLLKQK 165 (309)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2 22222233 34456667777777775443 3345677777777777777777776666554444433
No 149
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=85.19 E-value=76 Score=36.30 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQ 213 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq 213 (794)
....+++|+.++..|.++...++..+..+.-....|+
T Consensus 142 ~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777766665555554444444444
No 150
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.73 E-value=87 Score=36.57 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 119 AAEKALEHLRVQYEEADAKAQEFS 142 (794)
Q Consensus 119 ~~~~~l~~l~~~~~~~e~~~~~l~ 142 (794)
-+..++..++....+++.++..+.
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666655555555553
No 151
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=84.71 E-value=88 Score=36.60 Aligned_cols=107 Identities=13% Similarity=0.265 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhH---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALK---AMDIERQQLRSANNKLRDNIEELCR 253 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~---~~e~~re~Le~~~rkL~~e~eeLke 253 (794)
-.-+|+.||..+--|...++++.-++..-.- +-.=+..++...++-+. .+=-.|-.+...+++|+.-+...+.
T Consensus 329 Qq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqv----fvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk 404 (527)
T PF15066_consen 329 QQNRIQDLQCSNLYLEKKVKELQMKITKQQV----FVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQK 404 (527)
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777666555432110 00112233333332111 1112456777888899999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 254 SFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAE 287 (794)
Q Consensus 254 ~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~ 287 (794)
.|.+....+..||-++-++....-+++..+....
T Consensus 405 ~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei 438 (527)
T PF15066_consen 405 HLQESRNEKETLQLELKKIKANYVHLQERYMTEI 438 (527)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999999999888888777777444
No 152
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=1.1e+02 Score=37.64 Aligned_cols=373 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHH
Q 003810 94 VDVKELRERIESLSKELQEEKETRGA---AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKF 170 (794)
Q Consensus 94 ~~v~el~eq~e~l~r~~ek~k~~l~~---~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~ 170 (794)
+.........+++....+-.++.... +.+++.+|.....+.++.++.+...+.++..+...-+........-+.. .
T Consensus 234 e~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~-~ 312 (698)
T KOG0978|consen 234 EKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLES-K 312 (698)
T ss_pred HHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccc-h
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 003810 171 TRLHKRAKQRIQEVQKEKDDLE----TRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRD 246 (794)
Q Consensus 171 ~~lh~~~kqriqeLq~E~~~L~----e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~ 246 (794)
++.+.-...+++.+-.+..++. ..+.+.-.+...+.+....-..--.|....-.+....+..-.+++.........
T Consensus 313 ~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~ 392 (698)
T KOG0978|consen 313 SRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRD 392 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHh
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHH
Q 003810 247 NIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVS---DRSKAT 323 (794)
Q Consensus 247 e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~---~~~kl~ 323 (794)
+++ ...-.+..+.++++..=-..- ...++.+--...+++...+++.+.-++........-+.+..+ .+.-.+
T Consensus 393 ~~~--~ka~~E~e~l~q~l~~~~k~e---~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Q 467 (698)
T KOG0978|consen 393 KLQ--VKARAETESLLQRLKALDKEE---RSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQ 467 (698)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhh
Q 003810 324 ETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKE---KESWEAASQAFRKKLEIAESNCIHT 400 (794)
Q Consensus 324 ~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~---~~e~k~~~~el~~eLe~aE~~~~r~ 400 (794)
..+.+|-.++.+.|..|..|.. .-+++++..-.|..+..+. ...+++....+...+...|...+.+
T Consensus 468 eqn~kL~~el~ekdd~nfklm~-----------e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~l 536 (698)
T KOG0978|consen 468 EQNQKLLQELREKDDKNFKLMS-----------ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGL 536 (698)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHHHHHHHH
Q 003810 401 EIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKET 480 (794)
Q Consensus 401 e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~l~E~ 480 (794)
.-....+.. ++......+.+-.....++......|+..++. .++ .|..++....+.
T Consensus 537 t~~~~~l~~----el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek-------------------~~~-~le~i~~~~~e~ 592 (698)
T KOG0978|consen 537 TSNESKLIK----ELTTLTQSLEMLKKKAQEAKQSLEDLQIELEK-------------------SEA-KLEQIQEQYAEL 592 (698)
T ss_pred hHhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHH-HHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhH
Q 003810 481 EKEMSLVSAEKDKALQELQEALANHDK 507 (794)
Q Consensus 481 E~~l~~a~~er~ra~~elq~~~~~~~r 507 (794)
+.+++.-...+-+++-++-....-+.+
T Consensus 593 ~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 593 ELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 153
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.14 E-value=57 Score=33.97 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHh-hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKA-MDIERQQLRSANNKLRDNIEELCRSF 255 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~-~e~~re~Le~~~rkL~~e~eeLke~l 255 (794)
+.+-|++++..+..+...+.........+.+.+..+...+.+|..+....+.. =+..-...-..+..+...+..++..+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~ 107 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQL 107 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777788888888888888888887764431 01111122233344445555555555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 256 QPKEDALEALQLSLQEKDQMLEDMRTL 282 (794)
Q Consensus 256 ee~e~a~~~Lq~El~~l~~~L~~~r~~ 282 (794)
......+..|...+..+...+.+++..
T Consensus 108 ~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 108 DQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444443333
No 154
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=84.06 E-value=94 Score=36.39 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH--HH-HHHHHHHHHH
Q 003810 109 ELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL--HK-RAKQRIQEVQ 185 (794)
Q Consensus 109 ~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l--h~-~~kqriqeLq 185 (794)
+|.+=|++-..-...+..|+-...-.+++++.|.-+.. -|.-+=+-|..|.++..+|....-+. ++ ...-.+++|+
T Consensus 318 vL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~-kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLq 396 (527)
T PF15066_consen 318 VLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKIT-KQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQ 396 (527)
T ss_pred HHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHH
Confidence 34444445445556666666666666666666655555 33334444444455555444443333 11 1444455555
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003810 186 KEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAN 224 (794)
Q Consensus 186 ~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qle 224 (794)
.=+.+....|.|....+.-+.-++-.+......++.++-
T Consensus 397 e~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~ 435 (527)
T PF15066_consen 397 EALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYM 435 (527)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 555555555555444444444444444444444444433
No 155
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.57 E-value=45 Score=32.31 Aligned_cols=30 Identities=10% Similarity=0.272 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 126 HLRVQYEEADAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 126 ~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee 155 (794)
.|..........+..+..++..+..++...
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q 36 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQ 36 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444333333333
No 156
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=82.95 E-value=41 Score=38.27 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhh
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAM 230 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~ 230 (794)
-+.|+..+.+++.+.+.+......+...++.++.++.+|...|..+++....|
T Consensus 272 ~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 272 IQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45567777888888888888888888888888888888888888888765444
No 157
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.91 E-value=1.2e+02 Score=36.61 Aligned_cols=107 Identities=20% Similarity=0.338 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 003810 516 LNNANQQIKSIEIKLDSMN------TKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLK 589 (794)
Q Consensus 516 ~ee~r~qir~lE~~l~~~~------~~~~~~kk~~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~ 589 (794)
+..++.+.+.+-..++.+. .......+.+...+..+...+..-...+... ..+-+.+...+.++..++..+.
T Consensus 315 l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~--~~~yS~i~~~l~~~~~~l~~ie 392 (560)
T PF06160_consen 315 LEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQ--QVPYSEIQEELEEIEEQLEEIE 392 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcCHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554 1122333445555656554443333333331 1245666777777777777777
Q ss_pred HhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhc
Q 003810 590 DEHDSFRDLADRMM---EEKDNEISRLLDDNKNLHRSL 624 (794)
Q Consensus 590 ~E~e~~r~~~~~~l---~eke~el~kL~~e~~~l~~~L 624 (794)
.+...+......+. ......+..+...+....-.+
T Consensus 393 ~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 393 EEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666666555 444555666666665555554
No 158
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.87 E-value=1.5e+02 Score=37.87 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 119 AAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDV 198 (794)
Q Consensus 119 ~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~ 198 (794)
.+.++++.++......+-++..+.+-+.+.+.++... .+.+..+.+.+. ++++|-.-+++....+..+-++.
T Consensus 640 ~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~----~~er~~~~~~~~----~~~~r~~~ie~~~~~l~~qkee~ 711 (1072)
T KOG0979|consen 640 KLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLL----KRERTKLNSELK----SYQQRKERIENLVVDLDRQEEEY 711 (1072)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555556666666555555544 444443333332 34555555566656666655555
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHH
Q 003810 199 GETAERASSQCSALQQELERTRQQA 223 (794)
Q Consensus 199 e~~~~~lsk~~ssLq~qL~d~r~ql 223 (794)
......+-.....+..+.-+|...+
T Consensus 712 ~~~~~~~I~~~~~~~~~~~~~~~~~ 736 (1072)
T KOG0979|consen 712 AASEAKKILDTEDMRIQSIRWHLEL 736 (1072)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5555555555555555554444443
No 159
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.69 E-value=1.3e+02 Score=36.85 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPK 258 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~ 258 (794)
.++.+++.++..+...++........+...+..++..+.+++..+....+..-..|..++..+..+..++...+..+...
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666667777777776666555444456666666666666666666655544
Q ss_pred H
Q 003810 259 E 259 (794)
Q Consensus 259 e 259 (794)
.
T Consensus 289 ~ 289 (650)
T TIGR03185 289 A 289 (650)
T ss_pred h
Confidence 4
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.35 E-value=32 Score=39.90 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=37.1
Q ss_pred hHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 95 DVKELRE-RIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 95 ~v~el~e-q~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee 155 (794)
-+-+|.. |+++.+.-++...+....+..+...+..++.-.+.+..++..+++..+..+.++
T Consensus 340 ~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~ 401 (493)
T KOG0804|consen 340 IMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEE 401 (493)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444533 666666556555555555666666666666666666666666666666665555
No 161
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.26 E-value=92 Score=34.99 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003810 306 ESLEAQLADAVSDRSKATETISSLQVLV 333 (794)
Q Consensus 306 E~LEa~~~E~~~~~~kl~~~~~rLqeeL 333 (794)
...+..+..+...+......+..+...+
T Consensus 199 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l 226 (423)
T TIGR01843 199 LELERERAEAQGELGRLEAELEVLKRQI 226 (423)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 162
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.26 E-value=1.4e+02 Score=37.22 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 003810 216 LERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLE 277 (794)
Q Consensus 216 L~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~ 277 (794)
+.+-...|.+..+.++.+.+.+......|.-+.++|.+.+....+...+|..+++.+..++.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444457777777888888888888888888888888888888888888888888866665
No 163
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.98 E-value=64 Score=35.32 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 003810 244 LRDNIEELCRSFQPKEDALEALQLSLQEKD 273 (794)
Q Consensus 244 L~~e~eeLke~lee~e~a~~~Lq~El~~l~ 273 (794)
.-..+++|++.+--.-+...+|..++--+.
T Consensus 160 ~~sk~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 160 SDSKYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 335567777777777777777777777664
No 164
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=81.81 E-value=1.4e+02 Score=36.69 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=26.5
Q ss_pred HHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Q 003810 587 RLKDEHDSFRDLADRMM---EEKDNEISRLLDDNKNLHRS 623 (794)
Q Consensus 587 ~L~~E~e~~r~~~~~~l---~eke~el~kL~~e~~~l~~~ 623 (794)
-|+.++++.+.+...++ .++.-+++-|+..+..+...
T Consensus 908 ~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~m 947 (961)
T KOG4673|consen 908 GIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEM 947 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHH
Confidence 34447777777766555 88888998888887777643
No 165
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=81.76 E-value=41 Score=36.83 Aligned_cols=70 Identities=21% Similarity=0.408 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 003810 514 AALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWR-LRCELLKAQKEESSGQDVQKELQELKLQYKRLKD 590 (794)
Q Consensus 514 ~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~~~r-~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~ 590 (794)
--+..++.++++.+.+|..-.. +..++...|..+++.|= .+|-++|+|+..- +++|+++.+++-|.-++.
T Consensus 68 V~iRHLkakLkes~~~l~dRet----EI~eLksQL~RMrEDWIEEECHRVEAQLALK---EARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRLHDRET----EIDELKSQLARMREDWIEEECHRVEAQLALK---EARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 3444566666666666655443 55555566777777774 3577788876532 445555555555544444
No 166
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=81.45 E-value=73 Score=33.30 Aligned_cols=122 Identities=16% Similarity=0.266 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVG 199 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e 199 (794)
+..-+..|......++-+...+..||.++....++. .+...-+.++..++. .++..+...+....-.-++..
T Consensus 9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~----er~~Kv~enr~~kdE----E~~e~~e~qLkEAk~iaE~ad 80 (205)
T KOG1003|consen 9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADES----ERGMKVIENRAQKLE----EKMEAQEAQLKEAKHIAEKAD 80 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHH----HHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555555555555555 444444444444441 222223333333333334445
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 200 ETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCR 253 (794)
Q Consensus 200 ~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke 253 (794)
.+.....+.+.-...+|..+-.+++-+-... ..|....+.+...+..|..
T Consensus 81 rK~eEVarkL~iiE~dLE~~eeraE~~Es~~----~eLeEe~~~~~~nlk~l~~ 130 (205)
T KOG1003|consen 81 RKYEEVARKLVIIEGELERAEERAEAAESQS----EELEEDLRILDSNLKSLSA 130 (205)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHhHhHHHHHHH
Confidence 5666788888888888888777776322211 2455555555444444443
No 167
>PRK10698 phage shock protein PspA; Provisional
Probab=80.79 E-value=81 Score=33.40 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAM--DIERQQLRSANNKLRDNIEELCRS 254 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~--e~~re~Le~~~rkL~~e~eeLke~ 254 (794)
+.+=|++++..+..+...+...-.....+.+++..+.....+|..+..-....= +-.|..|. .+......+..|+..
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~-~K~~~~~~~~~l~~~ 107 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALI-EKQKLTDLIATLEHE 107 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 445566666777777666666666677788888888888888888877544311 11222222 223344555556665
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 255 FQPKEDALEALQLSLQEKDQMLEDMRTL 282 (794)
Q Consensus 255 lee~e~a~~~Lq~El~~l~~~L~~~r~~ 282 (794)
++.....+..|...+..+...+.+++.+
T Consensus 108 ~~~~~~~~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 108 VTLVDETLARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444444333
No 168
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=80.74 E-value=1e+02 Score=34.41 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l 173 (794)
+..++......+...+.-|+.|..+-+.+......-+.+-...+.++.++|...
T Consensus 62 l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~ 115 (309)
T PF09728_consen 62 LQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQAT 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555444444333333333355555555555444
No 169
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=80.17 E-value=70 Score=32.30 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003810 241 NNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRS 320 (794)
Q Consensus 241 ~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~ 320 (794)
.-+|.-+-..+.+.+++-+..+.+|..-.....+-+++++..+.... .+...+...+........
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~---------------~~~~~l~~~l~~~~~~~~ 108 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLS---------------EELERLKQELKDREEELA 108 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777777666777777776433 444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhh--cchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 321 KATETISSLQVLVAEKETTIAEMEAAS--TGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRK 388 (794)
Q Consensus 321 kl~~~~~rLqeeLeelerEnK~L~~~s--~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~ 388 (794)
++...+..+..+.+.+...|..|.... .+.| ++..+++.....+..+++.+. .|+..+..+..
T Consensus 109 ~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P-~ll~Dy~~~~~~~~~l~~~i~----~l~rk~~~l~~ 173 (177)
T PF13870_consen 109 KLREELYRVKKERDKLRKQNKKLRQQGGLLGVP-ALLRDYDKTKEEVEELRKEIK----ELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 555566666666666666666664222 2222 355567666666665544443 44444444443
No 170
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.10 E-value=29 Score=38.65 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQE 215 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~q 215 (794)
+.|...+...|.+++.....+.+++..++.+
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443333
No 171
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=78.48 E-value=98 Score=33.01 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhh-HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAM-DIERQQLRSANNKLRDNIEELCRSFQ 256 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~-e~~re~Le~~~rkL~~e~eeLke~le 256 (794)
-|-|++.+.++..+...+...-.....+.+.+..++....+|..+.......- +.--..+-..+..|.+.+..++..+.
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~ 109 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQ 109 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777666677777777777777777777776544321 11112333344455555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 257 PKEDALEALQLSLQEKDQMLEDMRTLL 283 (794)
Q Consensus 257 e~e~a~~~Lq~El~~l~~~L~~~r~~l 283 (794)
.....+.+|...+..+...+.+++...
T Consensus 110 ~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 110 QAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544444444433
No 172
>PRK11281 hypothetical protein; Provisional
Probab=78.40 E-value=2.3e+02 Score=37.16 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 123 ALEHLRVQYEEADAKAQEFSAKLAE 147 (794)
Q Consensus 123 ~l~~l~~~~~~~e~~~~~l~~ql~e 147 (794)
..+.+++...++.++++....++..
T Consensus 81 ~~~~L~k~l~~Ap~~l~~a~~~Le~ 105 (1113)
T PRK11281 81 ETEQLKQQLAQAPAKLRQAQAELEA 105 (1113)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344445555555555555555543
No 173
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.31 E-value=24 Score=30.17 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=39.7
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 220 RQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMR 280 (794)
Q Consensus 220 r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r 280 (794)
++.|+.+++ .|+.+.+.+++.....-.+..+|.+.......|..++..+.-++..++
T Consensus 3 QsaL~~Eir----akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 3 QSALEAEIR----AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666 667777777777777777777777777777777777777755555543
No 174
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.09 E-value=30 Score=37.29 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 684 LQEELEELERENRLHSQQEAMLKEEFRNM 712 (794)
Q Consensus 684 Le~~~~e~~~~~~~~~~q~~~Lk~eir~l 712 (794)
....+.+|+.+.....+++..|+.+|..+
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555444
No 175
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.99 E-value=1.4e+02 Score=33.52 Aligned_cols=43 Identities=9% Similarity=0.281 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHH
Q 003810 169 KFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSA 211 (794)
Q Consensus 169 ~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ss 211 (794)
.+..+-.+++.+.+.|..|...|...|.|+..-+.-+...+..
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 4445555677888888888888887777766665554444444
No 176
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.83 E-value=1.6e+02 Score=34.06 Aligned_cols=198 Identities=15% Similarity=0.168 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003810 231 DIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEA 310 (794)
Q Consensus 231 e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa 310 (794)
+..-..+...+++|+++++.+.+--.+.+...++++..+....+.+-. +.+..+ .+-.-++..+..++.
T Consensus 291 dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~-~~q~sE----------~ll~tlq~~iSqaq~ 359 (542)
T KOG0993|consen 291 DTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLE-ERQHSE----------DLLVTLQAEISQAQS 359 (542)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHhhH----------HHHHHHHHHHHHHHH
Confidence 444456677788888888877776666666655555555544332221 111111 111112233333333
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 311 QLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKL 390 (794)
Q Consensus 311 ~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eL 390 (794)
++-.-.+. +-.+..-+-.++.-+.-.|..|.+- +-+...+ ..++...+-.-.+....-.+.-...+...|
T Consensus 360 ~vq~qma~---lv~a~e~i~~e~~rl~q~nd~l~~~-----~~l~t~~--Qq~e~~~lp~ave~l~ql~~~~r~~~~~~l 429 (542)
T KOG0993|consen 360 EVQKQMAR---LVVASETIADEDSRLRQINDLLTTV-----GELETQV--QQAEVQNLPAAVEQLAQLYKQRRTSLQQEL 429 (542)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhc-----cccccch--hHhhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 22222221 1112222222333233333333221 1111222 123445555555555555666677788888
Q ss_pred HHHHhhhhhhHHHHHHHHhHHHh-HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 003810 391 EIAESNCIHTEIEAAKLRSQLES-ELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALL 454 (794)
Q Consensus 391 e~aE~~~~r~e~e~~~lk~e~E~-el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLl 454 (794)
++++--..++-.+...|+.+++. ...+.+ +.. ++..-..+|.-....|.+.|+..|.|-
T Consensus 430 ~a~ehv~e~l~~ei~~L~eqle~e~~~~~~--le~---ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 430 DASEHVQEDLVKEIQSLQEQLEKERQSEQE--LEW---QLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 88888888899999999999987 333333 222 333336677777777777776666663
No 177
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=75.66 E-value=1.6e+02 Score=33.91 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=12.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 202 AERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 202 ~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
...+.+.+.+.+++|..+.+++++
T Consensus 125 ~~~a~~n~~kAqQ~lar~t~Q~q~ 148 (499)
T COG4372 125 LAAARQNLAKAQQELARLTKQAQD 148 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666655555543
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.57 E-value=1.2e+02 Score=35.39 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLED 278 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~ 278 (794)
.+..+..+|..-.+..++.+.+....++.|+.++-|+..-++.
T Consensus 411 nq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 411 NQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 3444444444444444444445555556666666666444443
No 179
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=74.51 E-value=1.7e+02 Score=33.85 Aligned_cols=33 Identities=30% Similarity=0.273 Sum_probs=28.0
Q ss_pred CCCCchHHHHHHHHHhhhhhHHHHHhhhhcccC
Q 003810 49 SSNDNNEQLLGLVMELKLQNEFLKSQFEGLNTL 81 (794)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (794)
-+--.|++|-.-|--|.-+|..||--++.++.+
T Consensus 40 ~sP~~~e~l~~rv~slsq~Nkvlk~elet~k~k 72 (552)
T KOG2129|consen 40 FSPSPGESLGARVSSLSQRNKVLKGELETLKGK 72 (552)
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhhhhHHhhhhH
Confidence 356678999999999999999999988887743
No 180
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.44 E-value=41 Score=35.36 Aligned_cols=21 Identities=14% Similarity=0.472 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRD 197 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE 197 (794)
++.++..++.++..+...+.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655544
No 181
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.06 E-value=2.3e+02 Score=34.97 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 485 SLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNT 535 (794)
Q Consensus 485 ~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~ 535 (794)
.......+..-.++.+.+.+..+.|......++.+.-.+.+|...|.+...
T Consensus 439 k~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q 489 (716)
T KOG4593|consen 439 KGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQ 489 (716)
T ss_pred HHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444446666666666666666777777777777766663
No 182
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.69 E-value=2.1e+02 Score=34.36 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
.|...+-++..++-.+.-.|+...+.|..+..++-.+
T Consensus 370 sLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 370 SLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555554444444333
No 183
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.16 E-value=2e+02 Score=34.07 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=100.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-----CCCCCCCCCCccc----ccccccc---
Q 003810 582 KLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLELRPA-----DNHNDKDSTGITA----SQKQDVL--- 649 (794)
Q Consensus 582 q~~~~~L~~E~e~~r~~~~~~l~eke~el~kL~~e~~~l~~~L~~r~~-----~~~~~~~~~~~~~----s~~~d~~--- 649 (794)
.+.+.+++.++..++.-....+.+...+++.-+..+..--+.+++-+. .+++.+++.|+.. +..-|++
T Consensus 384 eqkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~s~ia~~~~e~pqq~s~sRSsSs~s~~tr~s~e~r~ss~ag 463 (613)
T KOG0992|consen 384 EQKLEELKVQFTAKQEKHAETIKELEIELEEYRRAILRNASEIAQYEDELPQQLSLSRSSSSGSQETRNSQEVRDSSEAG 463 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCccchhhhhhcccccccchhhchhhhhcchhhhh
Confidence 334778888888888888889988888888777654322211220100 0112222222211 0000110
Q ss_pred ----c-CCCCch----hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 003810 650 ----N-SIPSAA----EQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEE------------ 708 (794)
Q Consensus 650 ----~-~~~~~~----e~~~l~~a~~~a~re~El~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~e------------ 708 (794)
. .+|..+ -..|+.+-...||+-.-|.-+-.|+..|-.++..--+-.. .-.|.++
T Consensus 464 ssa~~v~~~qqDka~lierivrLQ~a~arknekiefLe~h~~qlveevQKktKiiQ-----hy~lrEes~~lttegsd~n 538 (613)
T KOG0992|consen 464 SSAQQVSSPQQDKADLIERIVRLQLAIARKNEKIEFLEQHLIQLVEEVQKKTKIIQ-----HYTLREESGPLTTEGSDIN 538 (613)
T ss_pred hhhhhcCchhhhhHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCCCCCccccc
Confidence 0 111111 1256677778888888888888888777765433222221 2223333
Q ss_pred ---HHH------Hhh-hccccCCchhHHHHHHHHhhhcCc--cccchHHHHHhhCCCHHHHHHHHHH
Q 003810 709 ---FRN------MER-SKKREGVDMTYLKNVILKLLETGE--VEALLPVIAMLLQFSPEEMQKCQRA 763 (794)
Q Consensus 709 ---ir~------ler-~~~re~~n~eYLKNV~l~fl~~~e--~~~llpvi~tlL~fsp~e~~~~~~a 763 (794)
|.+ +-. +..-.|.|++|++.|..+|...-+ -.+.|...+++..++.+...-+...
T Consensus 539 ks~L~r~simaal~G~~~~~~g~~lql~~eVn~KlqAvlEdtl~knItlksnLdtL~tE~erL~r~~ 605 (613)
T KOG0992|consen 539 KSSLERFSIMAALYGNCVIMDGVNLQLSLEVNVKLQAVLEDTLLKNITLKSNLDTLGTEEERLLRDT 605 (613)
T ss_pred cchHHHHHHHHHHhcCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 100 000 011246899999999999998744 4788888999999998877666553
No 184
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=72.98 E-value=1.3e+02 Score=31.65 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDAL 227 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~ 227 (794)
+.+=|++++..+..+...+...-.....+.+++..+...+.+|..+..-.+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al 79 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELAL 79 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666666777777777777887877776544
No 185
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.65 E-value=36 Score=36.08 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSAL 212 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssL 212 (794)
.|.++++++.|+..|...+++++.....+.-.+..+
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666668888877777777776666555544443
No 186
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=72.06 E-value=1.7e+02 Score=32.59 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=72.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHH
Q 003810 353 RFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAA 432 (794)
Q Consensus 353 ~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe~aE~~~~r~e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~ 432 (794)
|+-..+.+.+-+--+++.++.-....++...+-|-..|..++++...++.++-..+..+-. +...+..--++|...
T Consensus 116 dlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrE----KtL~lE~~QrdL~Qt 191 (305)
T PF14915_consen 116 DLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALRE----KTLALESVQRDLSQT 191 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3445667777777788888888888888888888889999999999999999998886533 333455566777777
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHh
Q 003810 433 KQEIIHLEREFSSYKIRAHALLQ 455 (794)
Q Consensus 433 q~e~~~le~Ele~~K~RahaLlk 455 (794)
+.++..++.-+..-..++..-..
T Consensus 192 q~q~KE~e~m~qne~~kv~k~~~ 214 (305)
T PF14915_consen 192 QCQIKEIEHMYQNEQDKVNKYIG 214 (305)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888887777664444444433
No 187
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.83 E-value=2e+02 Score=35.80 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETR 194 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~ 194 (794)
|+..++.+...+..|...
T Consensus 637 ~~~EL~~~~~~l~~l~~s 654 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKAS 654 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 188
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=71.41 E-value=1.5e+02 Score=31.68 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHH
Q 003810 94 VDVKELRERIESLSKELQEEKETRGA 119 (794)
Q Consensus 94 ~~v~el~eq~e~l~r~~ek~k~~l~~ 119 (794)
.++..+.+++..+...++.++.....
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~ 30 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRRE 30 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777666555444433
No 189
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.19 E-value=2.3e+02 Score=33.93 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHhhHHHHHHHH
Q 003810 114 KETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQK-LGQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 114 k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~k-l~ee~~~l~~~~~el~~~~~~l 173 (794)
...+..+...+..++....+...++..+..++.|++.= +. ..++.+|...+.+|
T Consensus 167 ~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~------~~E~e~L~~e~~~L 221 (563)
T TIGR00634 167 YQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ------PGEDEALEAEQQRL 221 (563)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC------CCcHHHHHHHHHHH
Confidence 35555677777788888888888888888888866542 21 23445555566666
No 190
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=70.44 E-value=70 Score=28.17 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003810 312 LADAVSDRSKATETISSLQVLVAEKETTIAEME 344 (794)
Q Consensus 312 ~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~ 344 (794)
+..+.+++.++-.+|.-|+.+++++..+|..|.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555666666688888888887777777775
No 191
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=69.97 E-value=1.4e+02 Score=30.83 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHhHH
Q 003810 514 AALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHD 593 (794)
Q Consensus 514 ~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~E~e 593 (794)
.+++..+.....|-..+..+...+.. +..+|..-+..|+.+.+.+..-.. .=+..|-.|+.++-
T Consensus 88 eQLEq~~~~N~~L~~dl~klt~~~~~----l~~eL~~ke~~~~~ee~~~~~y~~------------~eh~rll~LWr~v~ 151 (182)
T PF15035_consen 88 EQLEQARKANEALQEDLQKLTQDWER----LRDELEQKEAEWREEEENFNQYLS------------SEHSRLLSLWREVV 151 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc------------ccccHHHHHHHHHH
Confidence 44555555555555555555543322 233688888889999888877433 23455888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 594 SFRDLADRMMEEKDNEISRLLDDNK 618 (794)
Q Consensus 594 ~~r~~~~~~l~eke~el~kL~~e~~ 618 (794)
..|...-++...+++-|..+++++.
T Consensus 152 ~lRr~f~elr~~TerdL~~~r~e~~ 176 (182)
T PF15035_consen 152 ALRRQFAELRTATERDLSDMRAEFA 176 (182)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999988854
No 192
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.56 E-value=2.1e+02 Score=32.76 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 115 ETRGAAEKALEHLRVQYEEADAKAQEFSAK 144 (794)
Q Consensus 115 ~~l~~~~~~l~~l~~~~~~~e~~~~~l~~q 144 (794)
.+..-+...+..++..+..++.++..+..+
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446666666666666666666655443
No 193
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.09 E-value=2.2e+02 Score=32.69 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQM 275 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~ 275 (794)
.+...+..+..++..+...+.+..-.+..++.++..+...
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~ 297 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQ 297 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 3444444444555555544444444555555555555333
No 194
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.79 E-value=61 Score=34.10 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhh
Q 003810 96 VKELRERIESLSKEL 110 (794)
Q Consensus 96 v~el~eq~e~l~r~~ 110 (794)
..++..++..+++.+
T Consensus 88 ~p~~~~rlp~le~el 102 (206)
T PRK10884 88 TPSLRTRVPDLENQV 102 (206)
T ss_pred CccHHHHHHHHHHHH
Confidence 344555555555444
No 195
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=67.96 E-value=1.5e+02 Score=30.51 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDAL 227 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~ 227 (794)
=.+-..|.++|.+-+..+..+-.+...++.++...+ ++.++.
T Consensus 9 l~dak~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~-~y~eei 50 (181)
T PF05769_consen 9 LADAKRLVERLKDHDNAADSLLSQAEALNKQIESMR-QYQEEI 50 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 455566777777777777777778888888887666 555543
No 196
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.21 E-value=3.3e+02 Score=34.03 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003810 115 ETRGAAEKALEHLRVQY 131 (794)
Q Consensus 115 ~~l~~~~~~l~~l~~~~ 131 (794)
+.++-+..+.+.+.+.|
T Consensus 536 E~l~lL~~a~~vlreeY 552 (717)
T PF10168_consen 536 ECLELLSQATKVLREEY 552 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555777777777766
No 197
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=66.03 E-value=2.9e+02 Score=32.93 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEA 148 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~ 148 (794)
+..++-.+...+.+.+..++.+..++.++
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666655
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.16 E-value=1.1e+02 Score=34.14 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003810 235 QQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLAD 314 (794)
Q Consensus 235 e~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E 314 (794)
..+...++.|..+...+...|...+.....|.+++..+..+... +.+....+-.....+.-++.+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~---------------l~~eE~~~~~~~n~~~~~l~~ 110 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE---------------LDEEEEEYWREYNELQLELIE 110 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555554322222 122223445666677777777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhHH
Q 003810 315 AVSDRSKATETISSLQVLVAEKETTI 340 (794)
Q Consensus 315 ~~~~~~kl~~~~~rLqeeLeelerEn 340 (794)
...++..+...+.-.+..++.+.+-|
T Consensus 111 ~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 111 FQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777777778888888888766544
No 199
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=65.16 E-value=2e+02 Score=30.89 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=7.4
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 003810 354 FKAAVETVKGELAHLKRE 371 (794)
Q Consensus 354 l~~~~E~~~~el~~l~kk 371 (794)
+...+..+..-+..++++
T Consensus 125 l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 125 LQRALAEAQRMLEEMRKR 142 (264)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444444444444444333
No 200
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.67 E-value=75 Score=35.39 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=15.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhHHH
Q 003810 312 LADAVSDRSKATETISSLQVLVAEKETTIA 341 (794)
Q Consensus 312 ~~E~~~~~~kl~~~~~rLqeeLeelerEnK 341 (794)
+..+..++..+...+.+|+..|++.....+
T Consensus 221 LkKl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333344444555556666666665444433
No 201
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.67 E-value=63 Score=34.39 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003810 243 KLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKA 322 (794)
Q Consensus 243 kL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl 322 (794)
.+..++.+++++|++.......|..++..+...+...+..+.. +++-...|.|..+++-.++..|..++.++...+.-.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~-le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~ 210 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR-LEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELP 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccch
Confidence 3344444455555555544445555555554444444444432 223333456667777778888888888887754443
Q ss_pred H
Q 003810 323 T 323 (794)
Q Consensus 323 ~ 323 (794)
.
T Consensus 211 e 211 (290)
T COG4026 211 E 211 (290)
T ss_pred H
Confidence 3
No 202
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.39 E-value=2.5e+02 Score=30.76 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 121 EKALEHLRVQYEEADAKAQEFSAKLAEAQQK 151 (794)
Q Consensus 121 ~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~k 151 (794)
.+.+.+++..+.+....++.|-.|+.+++.+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k 67 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSK 67 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 203
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.87 E-value=1.1e+02 Score=27.03 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
+-|+..|.+.-..+.+....+......|.++...|...+..
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333333334444444444444444444443
No 204
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=59.76 E-value=98 Score=27.23 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 003810 174 HKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELE 217 (794)
Q Consensus 174 h~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~ 217 (794)
|..|+.-|.+|+.-...-......+...+..+++++..|..++.
T Consensus 23 ~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 23 QQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333334444444444444444443
No 205
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=59.62 E-value=2.8e+02 Score=30.62 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee 155 (794)
++..|+.|++++....=.++-|++-|.--..+.+++
T Consensus 23 lE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~e 58 (307)
T PF10481_consen 23 LEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEE 58 (307)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444344444444
No 206
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=59.29 E-value=85 Score=27.64 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 003810 128 RVQYEEADAKAQEFS 142 (794)
Q Consensus 128 ~~~~~~~e~~~~~l~ 142 (794)
..-+.++|..|..|.
T Consensus 4 ~~~l~EKDe~Ia~L~ 18 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLM 18 (74)
T ss_pred HHHHHhHHHHHHHHH
Confidence 334455555554444
No 207
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.97 E-value=45 Score=37.46 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 110 LQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKD 189 (794)
Q Consensus 110 ~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~ 189 (794)
+.+-+..+..+...|..|+..+.++-+....|..+...++.+|+-. .. |.+-++.-+++|...+..+.....
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA----~~----Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA----EK----LISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH----HH----HHhhhcchhhhHHHHHHHHHHHhc
Confidence 4444444444666666666666666666666666666556555554 22 333444556678888888777776
Q ss_pred HHHHH
Q 003810 190 DLETR 194 (794)
Q Consensus 190 ~L~e~ 194 (794)
.|-..
T Consensus 309 ~l~GD 313 (344)
T PF12777_consen 309 NLVGD 313 (344)
T ss_dssp HHHHH
T ss_pred ccHHH
Confidence 66543
No 208
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=58.82 E-value=92 Score=27.21 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 003810 235 QQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLED 278 (794)
Q Consensus 235 e~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~ 278 (794)
.......+.|..+.+..-.++..+...+..|..++..+..++.+
T Consensus 22 ~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 22 SVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777776777777777766555544
No 209
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.34 E-value=3e+02 Score=31.91 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003810 487 VSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVE 552 (794)
Q Consensus 487 a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le 552 (794)
.-.....++..+..+..++.+++.--...+.+-+-++.-||..++.....|+.+.-.+.++|+.++
T Consensus 224 ik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 224 IKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASME 289 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334445666666666666777777777777788888888888888888778778777777777776
No 210
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=57.35 E-value=2.5e+02 Score=32.14 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 174 HKRAKQRIQEVQKEKDDLETRLRDV 198 (794)
Q Consensus 174 h~~~kqriqeLq~E~~~L~e~leE~ 198 (794)
.+.|...+.+...=...+...+.+.
T Consensus 215 ~kDWR~hleqm~~~~~~I~~~~~~~ 239 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSIESALPET 239 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHH
Confidence 3446666666555555555544433
No 211
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.81 E-value=1e+02 Score=30.81 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKE 259 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e 259 (794)
.|...+..|..++..+..+|+...
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 212
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.80 E-value=1.8e+02 Score=34.77 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=31.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHhhhHHHHHHHHHHHHHHHHHhHhh
Q 003810 166 LDSKFTRLHKR---AKQRIQEVQKEKDDLETRLRDVGETA-------ERASSQCSALQQELERTRQQANDALKAM 230 (794)
Q Consensus 166 l~~~~~~lh~~---~kqriqeLq~E~~~L~e~leE~e~~~-------~~lsk~~ssLq~qL~d~r~qleEe~~~~ 230 (794)
+..+|+.|... +--+..-+..|+..|..+|.-.+... ..+...+..|+.+|.-+|..|++-+..|
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~M 492 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMM 492 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555211 33344444556666666555444333 3344445555555555555555544433
No 213
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.72 E-value=2e+02 Score=28.79 Aligned_cols=91 Identities=23% Similarity=0.345 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHH
Q 003810 467 TEQLRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKL----QVEKE 542 (794)
Q Consensus 467 ~e~~r~Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~----~~~kk 542 (794)
.+.+..|...+.++..++.....+.-.+..++..+.+.. -.++....+..+...+..++.+|..+.... ..++.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~--t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~ 148 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP--TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKE 148 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 335566666666666666666666666666665544432 112333555566666666666666655211 23455
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003810 543 AWEKNLQTVEESWRLRC 559 (794)
Q Consensus 543 ~~e~~L~~le~~~r~~~ 559 (794)
.+........+.|+.|.
T Consensus 149 ~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 149 KLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555666666666553
No 214
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=55.71 E-value=6.6e+02 Score=33.77 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHh-----HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 003810 376 KESWEAASQAFRKKLEIAESNCIHTEIEAAKLRSQLES-----ELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRA 450 (794)
Q Consensus 376 ~~e~k~~~~el~~eLe~aE~~~~r~e~e~~~lk~e~E~-----el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~Ra 450 (794)
+.++...+.++...+.........+......+..+... .+..-...+......+..+..++......+.....++
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~ 823 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAW 823 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777776666666666543 4444444455555556666666666666666644443
Q ss_pred HHHH
Q 003810 451 HALL 454 (794)
Q Consensus 451 haLl 454 (794)
+...
T Consensus 824 ~~a~ 827 (1353)
T TIGR02680 824 KQAR 827 (1353)
T ss_pred HHHH
Confidence 3333
No 215
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=54.16 E-value=3.4e+02 Score=30.02 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 132 EEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRL 195 (794)
Q Consensus 132 ~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~l 195 (794)
..++--|+.|..+|+|.+.+|.+- +.++.+|.++++|...+| ++.|+--+..+|
T Consensus 64 QQKEV~iRHLkakLkes~~~l~dR----etEI~eLksQL~RMrEDW------IEEECHRVEAQL 117 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKESENRLHDR----ETEIDELKSQLARMREDW------IEEECHRVEAQL 117 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 456667888888899888888876 778888888888884334 344555554444
No 216
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=53.69 E-value=5.4e+02 Score=32.12 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 237 LRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAV 316 (794)
Q Consensus 237 Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~ 316 (794)
+...+..+..++..++.+++-.++....|-...++. +....+....++ +-+..+-.+++.+.+++.+..
T Consensus 168 l~~~~qe~naeL~rarqreemneeh~~rlsdtvdEr---lqlhlkermaAl--------e~kn~L~~e~~s~kk~l~~~~ 236 (916)
T KOG0249|consen 168 LEEQLEELNAELQRARQREKMNEEHNKRLSDTVDER---LQLHLKERMAAL--------EDKNRLEQELESVKKQLEEMR 236 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH---HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444554444433 222222222222 334445567777777888877
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 003810 317 SDRSKATETISSLQVLVAEKE 337 (794)
Q Consensus 317 ~~~~kl~~~~~rLqeeLeele 337 (794)
-.+.++...+++|..+++++.
T Consensus 237 ~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 237 HDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 777777777777777777665
No 217
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=53.12 E-value=4.7e+02 Score=31.29 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=16.8
Q ss_pred chHHHHHHHHHhhhhhHHHHHhhhhccc
Q 003810 53 NNEQLLGLVMELKLQNEFLKSQFEGLNT 80 (794)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (794)
|+..|+.-++||. -||+..+..+.+
T Consensus 352 ~R~~fldeL~EL~---aFL~qRl~El~~ 376 (507)
T PF05600_consen 352 TRNQFLDELLELE---AFLKQRLYELSN 376 (507)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhcc
Confidence 4466777777875 477777666664
No 218
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.95 E-value=4.9e+02 Score=31.43 Aligned_cols=207 Identities=22% Similarity=0.276 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhh
Q 003810 380 EAASQAFRKKLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDA 459 (794)
Q Consensus 380 k~~~~el~~eLe~aE~~~~r~e~e~~~lk~e~E~el~~~~~~l~~~~~~l~~~q~e~~~le~Ele~~K~RahaLlk~K~~ 459 (794)
+..+.-+.+.+...++...-+.-.+.+|++.... ....++...=.|-..+.+|++++..|-. ||..+-.-.+
T Consensus 344 kEkv~~lq~~l~eke~sl~dlkehassLas~glk----~ds~Lk~leIalEqkkEec~kme~qLkk----Ah~~~ddar~ 415 (654)
T KOG4809|consen 344 KEKVNALQAELTEKESSLIDLKEHASSLASAGLK----RDSKLKSLEIALEQKKEECSKMEAQLKK----AHNIEDDARM 415 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHhhHhhhc
Confidence 3344444446666666666666667777775432 2333444444566668899999888866 4443332220
Q ss_pred HHhhhch-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 460 ELVAAND-TEQLRALEEALKETEKEMSLVSAEKDKALQEL---QEALANHDKELAERDAALNNANQQIKSIEIKLDSMNT 535 (794)
Q Consensus 460 ~l~aa~E-~e~~r~Le~~l~E~E~~l~~a~~er~ra~~el---q~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~ 535 (794)
-.+ .++++.++....+.++.+..|..+.|+..-=+ -+...+-+..+. ++..++.+--.++.. .
T Consensus 416 ----~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkia-------eler~~kdqnkkvaN--l 482 (654)
T KOG4809|consen 416 ----NPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIA-------ELERHMKDQNKKVAN--L 482 (654)
T ss_pred ----ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh-------hcCchhhhhhhHHhh--H
Confidence 011 34667888888888888887777776654332 222222222222 222222222222221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHH
Q 003810 536 KLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLA---DRMMEEKDNEISR 612 (794)
Q Consensus 536 ~~~~~kk~~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~E~e~~r~~~---~~~l~eke~el~k 612 (794)
.|....+ .+..+..++ ..+++.+.+-.+..+.. ++++=..+...+.+++...++. ..++.+++.-|.-
T Consensus 483 kHk~q~E-kkk~aq~le-e~rrred~~~d~sqhlq-------~eel~~alektkQel~~tkarl~stqqslaEke~HL~n 553 (654)
T KOG4809|consen 483 KHKQQLE-KKKNAQLLE-EVRRREDSMADNSQHLQ-------IEELMNALEKTKQELDATKARLASTQQSLAEKEAHLAN 553 (654)
T ss_pred HHHHHHH-HHHHHHHHH-HHHHHHhhhcchHHHHH-------HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2322211 122333333 56666666666544442 3444444445555555555443 3566889998888
Q ss_pred HHHH
Q 003810 613 LLDD 616 (794)
Q Consensus 613 L~~e 616 (794)
|+.+
T Consensus 554 Lr~e 557 (654)
T KOG4809|consen 554 LRIE 557 (654)
T ss_pred HHHH
Confidence 8866
No 219
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=52.85 E-value=2.9e+02 Score=28.87 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH---HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQE---LERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSF 255 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~q---L~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~l 255 (794)
+..+..+...+.+-+.....|.-.++-.++| +..-+.+...++..++.++......+++|+..+..|..+.
T Consensus 111 eAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 111 EAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777766666666665555544333 3444444445555555555556666666665555555443
No 220
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=52.70 E-value=2.9e+02 Score=28.76 Aligned_cols=109 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHh---
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRS--- 254 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~--- 254 (794)
++-+.+|+.+......-+.++...+.....-......-..+.+.++.--...+...+..+.....-...-..+|.++
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qL 145 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQL 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 255 FQPKEDALEALQLSLQEKDQMLEDMRTLLQAA 286 (794)
Q Consensus 255 lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~ 286 (794)
|+.....+..|.+++.....|++..+....++
T Consensus 146 LeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 221
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.42 E-value=4.6e+02 Score=30.70 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=62.7
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH---HHH-HHHHH
Q 003810 110 LQEEKETRGA----AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL---HKR-AKQRI 181 (794)
Q Consensus 110 ~ek~k~~l~~----~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l---h~~-~kqri 181 (794)
+++.-+.+.. ....--.++.++....++.--|+.++.+......+.|.+-.+--.++-.++.+- .++ ..-|+
T Consensus 227 lerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~ 306 (502)
T KOG0982|consen 227 LERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRD 306 (502)
T ss_pred HHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566655 122233577888888888888999998877776666555454444443333332 222 44455
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003810 182 QEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAN 224 (794)
Q Consensus 182 qeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qle 224 (794)
|+|..|...|...+.-+-..+..+.-.......+|..++.++.
T Consensus 307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 5555555555554444444444444444444444444444444
No 222
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.82 E-value=3.4e+02 Score=29.07 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhhhh
Q 003810 95 DVKELRERIESLSKE 109 (794)
Q Consensus 95 ~v~el~eq~e~l~r~ 109 (794)
+|+++..++..+.+.
T Consensus 2 ~i~~ir~K~~~lek~ 16 (230)
T PF10146_consen 2 KIKEIRNKTLELEKL 16 (230)
T ss_pred cHHHHHHHHHHHHHH
Confidence 456666666666555
No 223
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=50.18 E-value=73 Score=35.76 Aligned_cols=45 Identities=36% Similarity=0.452 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 181 IQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 181 iqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
+.....++..|...+...+.++..+.+-+..|..+-..|...+..
T Consensus 258 ~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~ 302 (344)
T PF12777_consen 258 YEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEE 302 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHH
Confidence 333356666667777777777778888888888888877776654
No 224
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.09 E-value=1.8e+02 Score=29.12 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh---hhHHHHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASS---QCSALQQELERTRQQAND 225 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk---~~ssLq~qL~d~r~qleE 225 (794)
.|.++..+..+++.+..+|.+....+..+.. ....|++++.+|+..+..
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777766665 455666666666555553
No 225
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.02 E-value=40 Score=27.06 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 243 KLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 243 kL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
+|+.+++-|+..++........|..+...+..++..+...++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577888888888888888888888888888777666555543
No 226
>PRK11519 tyrosine kinase; Provisional
Probab=48.69 E-value=4.7e+02 Score=32.46 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=7.3
Q ss_pred HHHHHhhhhhHH
Q 003810 59 GLVMELKLQNEF 70 (794)
Q Consensus 59 ~~~~~~~~~~~~ 70 (794)
.+|-+|+|..+|
T Consensus 102 ~VV~~L~L~~~~ 113 (719)
T PRK11519 102 KTVDDLDLDIAV 113 (719)
T ss_pred HHHHHhCCCeEe
Confidence 456667776553
No 227
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.47 E-value=3e+02 Score=27.72 Aligned_cols=46 Identities=9% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 180 RIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 180 riqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
.+.+|+.|+..|...++|-+..+..+.....+.-.-|.-+|.++..
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~ 88 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHF 88 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556699999999999998888888888888877888888887765
No 228
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.38 E-value=4.1e+02 Score=29.21 Aligned_cols=35 Identities=11% Similarity=0.341 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERT 219 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~ 219 (794)
|.+++.|..++++...++..+...+..+++++..+
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l 85 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKL 85 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443333
No 229
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=48.28 E-value=36 Score=38.11 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 187 EKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 187 E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
++..+.++|..+|.....+...+..+.+.+.++...++.
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~ 67 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQD 67 (326)
T ss_dssp ---------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666655555544
No 230
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=48.00 E-value=2.7e+02 Score=27.02 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=22.1
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 248 IEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAA 286 (794)
Q Consensus 248 ~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~ 286 (794)
+++|.++.+..+-.+..|..+-..++..+..++..+..+
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666666655566656666543
No 231
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.95 E-value=5e+02 Score=30.18 Aligned_cols=79 Identities=11% Similarity=0.215 Sum_probs=52.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 115 ETRGA-AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLET 193 (794)
Q Consensus 115 ~~l~~-~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e 193 (794)
..|+. ...++.-+...+.+---++.+|+.|+.++-+-...||.+|...+....+++.=. .-.|.++++.=.+.+..
T Consensus 236 e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yq---s~eRaRdi~E~~Es~qt 312 (395)
T PF10267_consen 236 EKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQ---SYERARDIWEVMESCQT 312 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHhHHHHHHHHHHH
Confidence 44444 555666677777777788888888888888888888888888877776666544 33455554444444444
Q ss_pred HHH
Q 003810 194 RLR 196 (794)
Q Consensus 194 ~le 196 (794)
++.
T Consensus 313 Ris 315 (395)
T PF10267_consen 313 RIS 315 (395)
T ss_pred HHH
Confidence 443
No 232
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.54 E-value=5.2e+02 Score=30.15 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHH
Q 003810 261 ALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVS-----DRSKATETISSLQVLVAE 335 (794)
Q Consensus 261 a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~-----~~~kl~~~~~rLqeeLee 335 (794)
.+..|..++-.....++.++.-..=..-.+.+++.+.+.....+|.++++-..+-.. -+.++......+++--+.
T Consensus 39 dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~e~ 118 (542)
T KOG0993|consen 39 DLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQNEEK 118 (542)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555444444222211111123345566666666677777665443332 455677788888999999
Q ss_pred HHhHHHHHH-Hhhcc-hhHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003810 336 KETTIAEME-AASTG-KEARFKAAVETVKGELAHLKR---EHEKEKESWEAASQAFRKKLEIAESNCIH 399 (794)
Q Consensus 336 lerEnK~L~-~~s~~-~~~~l~~~~E~~~~el~~l~k---k~ek~~~e~k~~~~el~~eLe~aE~~~~r 399 (794)
+++|++.|. --|-| .-.+|...++++..+-.++.. =.+|++.+++.++.+.+..++..+...+.
T Consensus 119 ~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 119 LEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 999999983 22222 222345556665555555443 24666888888888888888887754444
No 233
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=47.53 E-value=1.8e+02 Score=24.91 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=8.1
Q ss_pred HhhhhHHHHHHHHHHH
Q 003810 483 EMSLVSAEKDKALQEL 498 (794)
Q Consensus 483 ~l~~a~~er~ra~~el 498 (794)
.|++.+..+.-+..+|
T Consensus 5 aL~~EirakQ~~~eEL 20 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEEL 20 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555555
No 234
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=47.04 E-value=3.7e+02 Score=28.37 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee 155 (794)
+...|+..+.+.+.++..|-.|-.++.++...++.-
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~ 50 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNK 50 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555555555554443
No 235
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=46.57 E-value=1.6e+02 Score=28.72 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=40.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHH----------HH--HHHhhhHHHHHHHHHHHHHHHHHhHhhHHH
Q 003810 169 KFTRLHKR---AKQRIQEVQKEKDDLETRLRDVGET----------AE--RASSQCSALQQELERTRQQANDALKAMDIE 233 (794)
Q Consensus 169 ~~~~lh~~---~kqriqeLq~E~~~L~e~leE~e~~----------~~--~lsk~~ssLq~qL~d~r~qleEe~~~~e~~ 233 (794)
.|.++|.| .|+.|+....++++|..-..|.+=. +. =++-....++.+|...+..++..+.
T Consensus 24 ~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~----- 98 (131)
T KOG1760|consen 24 EFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIE----- 98 (131)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHH-----
Confidence 67777644 5566666666666555544442211 11 1233455566666666666555332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 003810 234 RQQLRSANNKLRDNIEELCRSF 255 (794)
Q Consensus 234 re~Le~~~rkL~~e~eeLke~l 255 (794)
.|+.........++.|+..|
T Consensus 99 --~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 99 --ELESELESISARMDELKKVL 118 (131)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554433
No 236
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=46.43 E-value=5.8e+02 Score=30.38 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHH
Q 003810 235 QQLRSANNKLRDNIEELCRSFQPKE 259 (794)
Q Consensus 235 e~Le~~~rkL~~e~eeLke~lee~e 259 (794)
..|...++=|.+.++..+.++++..
T Consensus 136 ~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 136 QSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3555555556666666666555544
No 237
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=45.84 E-value=1.1e+02 Score=31.30 Aligned_cols=58 Identities=14% Similarity=0.266 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 137 KAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRL 195 (794)
Q Consensus 137 ~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~l 195 (794)
-..+|..+..+.+.+|+.+|+.|..+..-++.-..++ +.++.+.-.|+.+++.+...+
T Consensus 110 tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~-k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 110 TFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKS-KTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3446777888888888888888888777666555555 345666666666766665543
No 238
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.31 E-value=1.4e+02 Score=36.04 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 237 LRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 237 Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
+....+.=..+++.|++.+.-.......+...|+..
T Consensus 253 ~~~lk~ap~~D~~~L~~~~~~~~~~~~~~~~~L~g~ 288 (555)
T TIGR03545 253 LAELKKAPQNDLKRLENKYAIKSGDLKNFAVDLFGP 288 (555)
T ss_pred HHHHHhccHhHHHHHHHHhCCCcccHHHHHHHHhhH
Confidence 333444445555555555554444445555555433
No 239
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=45.24 E-value=4.9e+02 Score=29.21 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhhhHHhhHHHHH------HHHHHH-HHHHHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKL-------GQEIKGHEDKYTELDSKF------TRLHKR-AKQRIQEVQ 185 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl-------~ee~~~l~~~~~el~~~~------~~lh~~-~kqriqeLq 185 (794)
+......+...+..+-..+..|.+.|. +...| +++.+....--..+.... +..+-. .+.|++.|+
T Consensus 95 L~~~~~~le~~L~~~~e~v~qLrHeL~-~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LE 173 (306)
T PF04849_consen 95 LSERNEALEEQLGAALEQVEQLRHELS-MKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLE 173 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHH
Confidence 555666666666666677777777766 44333 111000000000000000 111222 678888888
Q ss_pred HHHHHHHHHHHHH
Q 003810 186 KEKDDLETRLRDV 198 (794)
Q Consensus 186 ~E~~~L~e~leE~ 198 (794)
.|+..|......+
T Consensus 174 eEN~~LR~Ea~~L 186 (306)
T PF04849_consen 174 EENEQLRSEASQL 186 (306)
T ss_pred HHHHHHHHHHHHh
Confidence 8888877655443
No 240
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.06 E-value=5.2e+02 Score=32.10 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=7.4
Q ss_pred HHHHHhhhhhHH
Q 003810 59 GLVMELKLQNEF 70 (794)
Q Consensus 59 ~~~~~~~~~~~~ 70 (794)
..|-.|+|...|
T Consensus 102 ~VV~~L~L~~~~ 113 (726)
T PRK09841 102 KTIAELNLRDIV 113 (726)
T ss_pred HHHHHhCCceEE
Confidence 456667776554
No 241
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=45.02 E-value=3.9e+02 Score=28.07 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHh
Q 003810 124 LEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYT 164 (794)
Q Consensus 124 l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~ 164 (794)
|..|...-.+.+..+..|..++......+..+++.+...|+
T Consensus 6 l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~ 46 (206)
T PF14988_consen 6 LEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYA 46 (206)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777888888888877666677766666555555
No 242
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.92 E-value=3.1e+02 Score=33.46 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEA 264 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~ 264 (794)
+.|+..|...+++.. +.+..|.++|...+.....+. -....++.+...++.|+..|.+....+..
T Consensus 435 ~~e~~~L~~~~ee~k-------~eie~L~~~l~~~~r~~~~~~--------~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 435 EEENSELKRELEELK-------REIEKLESELERFRREVRDKV--------RKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444333 344444444444444444322 33445566667777777777777777777
Q ss_pred HHHHHHHH
Q 003810 265 LQLSLQEK 272 (794)
Q Consensus 265 Lq~El~~l 272 (794)
|.+.+..+
T Consensus 500 L~~~l~~l 507 (652)
T COG2433 500 LERKLAEL 507 (652)
T ss_pred HHHHHHHH
Confidence 77766665
No 243
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.39 E-value=2.7e+02 Score=31.06 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=42.6
Q ss_pred hhcccCCCCCcchhhhh------hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 76 EGLNTLRPEDDGQESRE------VVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQ 149 (794)
Q Consensus 76 ~~~~~~~~~~~~~~~~~------~~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q 149 (794)
-||.++++..-+|--|| ..-..+++.+.+-++.+.- +-.+..+++|+....++..+....+++ .++-.
T Consensus 306 Mgf~dv~~~~~p~s~qet~eaKr~e~~~e~qrkEee~rqmFv---qrvkekE~elke~Ekel~~kf~~lkr~---h~eEk 379 (406)
T KOG3859|consen 306 MGFKDVDPDNKPFSLQETYEAKRNEFLGELQRKEEEMRQMFV---QRVKEKEAELKEAEKELHEKFDRLKRL---HQEEK 379 (406)
T ss_pred cCCccCCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 57899999877775444 3334444444444444410 122224555555544444444433333 23334
Q ss_pred HHHHhhhhhhhhHHhhHH
Q 003810 150 QKLGQEIKGHEDKYTELD 167 (794)
Q Consensus 150 ~kl~ee~~~l~~~~~el~ 167 (794)
.+|++.|..|++.+..+.
T Consensus 380 ~kle~~rr~Leee~~~f~ 397 (406)
T KOG3859|consen 380 KKLEEKRKQLEEEVNAFQ 397 (406)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555443
No 244
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.85 E-value=4.1e+02 Score=28.00 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 357 AVETVKGELAHLKREHEKEKESWEAASQAFRK 388 (794)
Q Consensus 357 ~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~ 388 (794)
.+..+++++..+...+..++.++...+.+.-.
T Consensus 164 AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~ 195 (201)
T PF11172_consen 164 AIASLQGEFSSIESDISQLIKEMERSIAEADA 195 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666665555443
No 245
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.76 E-value=6.3e+02 Score=30.07 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 003810 580 ELKLQYKRLKDEHDSFRDLADRMMEE 605 (794)
Q Consensus 580 elq~~~~~L~~E~e~~r~~~~~~l~e 605 (794)
++-..+.-+-.++++...........
T Consensus 377 ~Lydkl~~f~~~~~klG~~L~~a~~~ 402 (475)
T PRK10361 377 KLYDKMRLFVDDMSAIGQSLDKAQDN 402 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 246
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.65 E-value=6.7e+02 Score=30.38 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHHH--HhhcchhHHHHhhHHHHHHHHHHHHHHHHHH
Q 003810 327 SSLQVLVAEKETTIAEME--AASTGKEARFKAAVETVKGELAHLKREHEKE 375 (794)
Q Consensus 327 ~rLqeeLeelerEnK~L~--~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~ 375 (794)
.||..+-.+++-||.+|. ++...... +.+|-++|++.++....+-.
T Consensus 166 ~RllseYSELEEENIsLQKqVs~LR~sQ---VEyEglkheikRleEe~ell 213 (772)
T KOG0999|consen 166 ARLLSEYSELEEENISLQKQVSNLRQSQ---VEYEGLKHEIKRLEEETELL 213 (772)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhhhh---hhhhHHHHHHHHHHHHHHHH
Confidence 345555566666666663 22222222 56677777777766655544
No 247
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=43.47 E-value=1.8e+02 Score=30.91 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003810 302 QKNLESLEAQLADAVSDRSKATETISSLQVLVA 334 (794)
Q Consensus 302 q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLe 334 (794)
+..++.+..++.++..+++++.+..++||+.|+
T Consensus 178 ~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 577888888888899999999999999999887
No 248
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.31 E-value=4.4e+02 Score=28.13 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 233 ERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
++..|....+.|..+++.|+......+.-+..++.++..+
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333333333333
No 249
>PRK04406 hypothetical protein; Provisional
Probab=42.36 E-value=1.7e+02 Score=25.87 Aligned_cols=54 Identities=17% Similarity=0.436 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 470 LRALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIE 527 (794)
Q Consensus 470 ~r~Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE 527 (794)
+..|+.-+.++|..+.+ .+....+|+.++...+++|+...+++..+..++++++
T Consensus 6 ~~~le~Ri~~LE~~lAf----QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 6 IEQLEERINDLECQLAF----QEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567777777766644 3556666677777666667666666666666555543
No 250
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=41.74 E-value=4.8e+02 Score=28.17 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHH
Q 003810 138 AQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL------HKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSA 211 (794)
Q Consensus 138 ~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l------h~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ss 211 (794)
|-+|+.+|.+....++.-.-+-..++..+..++|+- .-+++.+.++++.+.......|+-..+....+-..+.-
T Consensus 23 IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~l 102 (239)
T PF05276_consen 23 INRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEMVAL 102 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554444444455555555566654 22277777888888887777777766666555555555
Q ss_pred HHHHHH
Q 003810 212 LQQELE 217 (794)
Q Consensus 212 Lq~qL~ 217 (794)
+.+.|.
T Consensus 103 aEq~l~ 108 (239)
T PF05276_consen 103 AEQSLM 108 (239)
T ss_pred HHHHHh
Confidence 555553
No 251
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.52 E-value=4e+02 Score=32.50 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 003810 55 EQLLGLVMEL 64 (794)
Q Consensus 55 ~~~~~~~~~~ 64 (794)
.+++..|.+|
T Consensus 278 ~eVve~I~~l 287 (652)
T COG2433 278 SEVVEFISEL 287 (652)
T ss_pred HHHHHHHHHc
Confidence 3344444433
No 252
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.14 E-value=5.2e+02 Score=28.31 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=15.4
Q ss_pred HHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 104 ESLSKE-LQEEKETRGAAEKALEHLRVQYEEADA 136 (794)
Q Consensus 104 e~l~r~-~ek~k~~l~~~~~~l~~l~~~~~~~e~ 136 (794)
++.|+. --+=|+.......++...+.+-.+-++
T Consensus 15 ~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~Ea 48 (333)
T KOG1853|consen 15 DQYWKLLHHEYKQHFLQMREELNEFQEGSREIEA 48 (333)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 444554 223344444455555555555444443
No 253
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=40.88 E-value=5.2e+02 Score=28.30 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 238 RSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 238 e~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
.++..+....+..|..+++..+..+...+.++..+
T Consensus 73 qe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 73 QEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444
No 254
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.68 E-value=3.1e+02 Score=25.62 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 235 QQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 235 e~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
....+++..|.+.++.+...+...+.....|+..+.++
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444444444444444443
No 255
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=39.71 E-value=4e+02 Score=26.65 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 003810 357 AVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIE 403 (794)
Q Consensus 357 ~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe~aE~~~~r~e~e 403 (794)
+++.+-.-+.+-.+++++.+..++..++++.......+.....+...
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666666666666666665555444444433
No 256
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=39.16 E-value=4.8e+02 Score=27.35 Aligned_cols=100 Identities=11% Similarity=0.209 Sum_probs=55.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Q 003810 478 KETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTK---LQVEKEAWEKNLQTVEES 554 (794)
Q Consensus 478 ~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~---~~~~kk~~e~~L~~le~~ 554 (794)
.|+-..|..++.++..+..+-..+++++-|.|+.--.++..++.-..-|......++.. +-..+- .-..+-..
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRq----KgrklarE 94 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQ----KGRKLARE 94 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHH----HhHHHhHH
Confidence 34445566667777778888888888888888766666666665555555554444410 000111 11112233
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 003810 555 WRLRCELLKAQKEESSGQDVQKELQELKLQYKRLK 589 (794)
Q Consensus 555 ~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~ 589 (794)
|++ .-+.+..-|++++..|+..++.|.
T Consensus 95 WQr--------FGryta~vmr~eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 95 WQR--------FGRYTASVMRQEVAQYQQKLKELE 121 (195)
T ss_pred HHH--------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 322 111144566888888888886553
No 257
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=39.13 E-value=5.2e+02 Score=27.76 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----hhHHHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASS-----QCSALQQELERTRQQAN 224 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk-----~~ssLq~qL~d~r~qle 224 (794)
..++.+.|...+..+...+.+.-..+..+.. .-..+..-|.+++..++
T Consensus 85 t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~ 137 (264)
T PF06008_consen 85 TLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLE 137 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655555 33344444444444443
No 258
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=39.12 E-value=6e+02 Score=28.47 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHH
Q 003810 93 VVDVKELRERIESLSKE-----LQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELD 167 (794)
Q Consensus 93 ~~~v~el~eq~e~l~r~-----~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~ 167 (794)
++.++++.+++..++-. +-+....+.+....+..+...+......++.|...+..-.....--+-..-....++.
T Consensus 54 A~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t 133 (301)
T PF06120_consen 54 ADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADAT 133 (301)
T ss_pred HHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Q 003810 168 SKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQ 222 (794)
Q Consensus 168 ~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~q 222 (794)
.++..+ ..++.....+++....+....++.+..+..+..+.-.+
T Consensus 134 ~~la~~-----------t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~ 177 (301)
T PF06120_consen 134 RKLAEA-----------TRELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQ 177 (301)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 259
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=38.38 E-value=7.2e+02 Score=29.17 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=39.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 316 VSDRSKATETISSLQVLVAEKETTIAEME-AASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQ 384 (794)
Q Consensus 316 ~~~~~kl~~~~~rLqeeLeelerEnK~L~-~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~ 384 (794)
......+...+..||+.|+.|...+-.=- .-.......+..++..+..++..++.-+...++-|+..-+
T Consensus 212 ~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE 281 (424)
T PF03915_consen 212 SEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWE 281 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 33444555556666666666654433321 0001111124567777888888888888888888887654
No 260
>PRK11546 zraP zinc resistance protein; Provisional
Probab=38.34 E-value=3.3e+02 Score=27.24 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 216 LERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 216 L~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
++.....+...+. .|+..+..-+.+++.|-..-..-..++..|.+||.+++.+|.+.+-.+.
T Consensus 52 ~q~I~~~f~~~t~-------~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 52 WQKIHNDFYAQTS-------ALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445544333 5666666666777777666666777899999999999888887665555
No 261
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.33 E-value=6.3e+02 Score=28.26 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHHH
Q 003810 208 QCSALQQELERTR 220 (794)
Q Consensus 208 ~~ssLq~qL~d~r 220 (794)
++..++.+|..++
T Consensus 222 ~l~~~~~~l~~l~ 234 (362)
T TIGR01010 222 ELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 262
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.12 E-value=5e+02 Score=27.00 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 180 RIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 180 riqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
+|-+|+.....+...-+.....+.++......++.++.+++..++.
T Consensus 139 ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 139 KILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555556666666666777777777777777777776654
No 263
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=36.24 E-value=8.4e+02 Score=29.34 Aligned_cols=90 Identities=24% Similarity=0.347 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVG 199 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e 199 (794)
-...+..|...+..+|.|.-.+...-.-+..+|+.. +..+..+...+.. ++++|..||.|+.--...+ +
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~a----E~ek~~l~eeL~~----a~~~i~~LqDEL~TTr~NY---E 486 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESA----EKEKESLEEELKE----ANQNISRLQDELETTRRNY---E 486 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhH---H
Confidence 667777788888888877777777777677776655 4444333333322 3466666688877766665 4
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 003810 200 ETAERASSQCSALQQELERTR 220 (794)
Q Consensus 200 ~~~~~lsk~~ssLq~qL~d~r 220 (794)
..+.-++-.+.+++.+|..-+
T Consensus 487 ~QLs~MSEHLasmNeqL~~Q~ 507 (518)
T PF10212_consen 487 EQLSMMSEHLASMNEQLAKQR 507 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655333
No 264
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.18 E-value=4.9e+02 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHH----HHHHHHHHHHHHHHHHHHH
Q 003810 233 ERQQLRSANNKLRDNIEELCRSFQPKED----ALEALQLSLQEKDQMLEDM 279 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~lee~e~----a~~~Lq~El~~l~~~L~~~ 279 (794)
.|..+-..+..|..++..|+..++.... .+..+..++..+......|
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666553332 4455555555554444443
No 265
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=36.16 E-value=1.2e+03 Score=30.95 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHH
Q 003810 98 ELRERIESLSKE-LQEEKETRGAAEKALEHLRV 129 (794)
Q Consensus 98 el~eq~e~l~r~-~ek~k~~l~~~~~~l~~l~~ 129 (794)
.+..+++++++. ....|...+.++..+.-+..
T Consensus 27 ~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~ 59 (1109)
T PRK10929 27 QITQELEQAKAAKTPAQAEIVEALQSALNWLEE 59 (1109)
T ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 344455555444 22234444445555544443
No 266
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.62 E-value=3.3e+02 Score=24.48 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHhHHHHhhhhhhhH
Q 003810 389 KLEIAESNCIHTEIEAAKLRSQLESELSVQNQLLSTR 425 (794)
Q Consensus 389 eLe~aE~~~~r~e~e~~~lk~e~E~el~~~~~~l~~~ 425 (794)
++...-..+-.++....++|..+|.+|.+....+..+
T Consensus 40 Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 40 EMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555666777777888888888887766665544
No 267
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.58 E-value=5.4e+02 Score=28.36 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=16.1
Q ss_pred CCCCchHHHHHHHHH--------hhhhhHHHHHhh
Q 003810 49 SSNDNNEQLLGLVME--------LKLQNEFLKSQF 75 (794)
Q Consensus 49 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 75 (794)
++-.+..-+++-|++ ..|+|-+|+|.|
T Consensus 93 ~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~y 127 (269)
T PF05278_consen 93 QVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYY 127 (269)
T ss_pred EEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHH
Confidence 444445555555543 567777777766
No 268
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.42 E-value=5.8e+02 Score=27.22 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=28.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHH
Q 003810 203 ERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCR-----SFQPKEDALEALQLSLQEKDQM 275 (794)
Q Consensus 203 ~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke-----~lee~e~a~~~Lq~El~~l~~~ 275 (794)
..+.+.+.+.+.++.++..+.+.-.. .+..+.-.+..+.+.++..-. ..++-...+..|...+.+..+.
T Consensus 73 ~~l~~~v~~q~~el~~L~~qi~~~~~----~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~ 146 (251)
T PF11932_consen 73 EQLERQVASQEQELASLEQQIEQIEE----TRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVS 146 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCC
Confidence 33444444444444444444433111 334444444444444444333 1223333445555555544333
No 269
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.10 E-value=3.2e+02 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003810 318 DRSKATETISSLQVLVAEKETTIAEME 344 (794)
Q Consensus 318 ~~~kl~~~~~rLqeeLeelerEnK~L~ 344 (794)
++...-.+|.=||-+|++++..|.+|.
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 333444477777777887777777773
No 270
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=34.98 E-value=1.3e+03 Score=31.03 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003810 327 SSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKE 377 (794)
Q Consensus 327 ~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~ 377 (794)
+.+...+....+++-.+. +..+..+|-...++.++.+...+.+++.+.+.
T Consensus 791 e~~~~d~~~~~k~ie~~~-s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rk 840 (1294)
T KOG0962|consen 791 ERFLKDLKLREKEIEELV-SELDSSVDGIRTVDELRKEKSKKQESLDKLRK 840 (1294)
T ss_pred HHHHHHHHHHHHHHHHHH-HhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444442 12222122347888888888888777777643
No 271
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=34.80 E-value=6.9e+02 Score=27.95 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 116 TRGAAEKALEHLRVQYEEADAKAQEFSAK 144 (794)
Q Consensus 116 ~l~~~~~~l~~l~~~~~~~e~~~~~l~~q 144 (794)
.+.-+..++..++..+.+++..+..+..+
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33346666666666666666655555443
No 272
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.66 E-value=1e+03 Score=29.96 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 003810 725 YLKNVILKLL 734 (794)
Q Consensus 725 YLKNV~l~fl 734 (794)
.||+.|-.||
T Consensus 735 ~Lr~~v~~~L 744 (771)
T TIGR01069 735 KLRKGVQELL 744 (771)
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 273
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=34.66 E-value=1.8e+02 Score=25.08 Aligned_cols=51 Identities=18% Similarity=0.438 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 473 LEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIE 527 (794)
Q Consensus 473 Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE 527 (794)
|+..+.++|..+. -.+....+|+.++...+++|+...+++..+..+++++.
T Consensus 2 le~Ri~~LE~~la----~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLA----FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555543 34566677777777777777766666666666666655
No 274
>PRK02119 hypothetical protein; Provisional
Probab=34.48 E-value=2.6e+02 Score=24.67 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 471 RALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIE 527 (794)
Q Consensus 471 r~Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE 527 (794)
..++.-+.++|..+.+ .+.+..+|+.++...+++|+...+++.-+..++++++
T Consensus 5 ~~~e~Ri~~LE~rla~----QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 5 QNLENRIAELEMKIAF----QENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4466677666666644 3455666666777666667666666666666555543
No 275
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=34.29 E-value=1.2e+03 Score=30.55 Aligned_cols=215 Identities=14% Similarity=0.264 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHH--HH-------------HHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKR--AK-------------QRIQEV 184 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~--~k-------------qriqeL 184 (794)
..+.+++.+..+...+..++-+..++++.+.+++.- +.+.++..++..|..+ |. ..++-.
T Consensus 219 ~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~-----~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~ 293 (1074)
T KOG0250|consen 219 IMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL-----EQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKK 293 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667777777777777666666533 2233333344444222 22 233333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEA 264 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~ 264 (794)
|...+.|.+.+++...++..+...+++.+.++...+.-.+. .+..=+.+...++.+..++..++...-..++....
T Consensus 294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~----~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDA----QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555554443332222 22222344455555556666666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 265 LQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 265 Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
++..++-+.-++.+++.++-......+...+.....+..+++.++..+..+..+.......+..-+.+....++.+.+|
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l 448 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQL 448 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5555555555555544444211212222222223333566666666666666665555555555556655555555555
No 276
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.93 E-value=5.6e+02 Score=26.64 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l 173 (794)
+...+..-.......|..+..|+.++-+++....-- .......+..+.++
T Consensus 115 le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~----~~~ke~~~~ei~~l 164 (190)
T PF05266_consen 115 LEKKIEEKEAELKELESEIKELEMKILELQRQAAKL----KEKKEAKDKEISRL 164 (190)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 333333333344444444555555554444432222 33344444455555
No 277
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.73 E-value=8.6e+02 Score=30.25 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAE 287 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~ 287 (794)
.+......|...+..++.++... -..+.++..+.-+.+-.+..+...+
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~~----p~~e~~~~~L~R~~~~~~~lY~~lL 390 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKRVSAM----PSTQQEVLRLSRDVEAGRAVYLQLL 390 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555554443332 2334444444444444455554444
No 278
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.73 E-value=5.5e+02 Score=26.51 Aligned_cols=56 Identities=25% Similarity=0.280 Sum_probs=25.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 003810 354 FKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRS 409 (794)
Q Consensus 354 l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe~aE~~~~r~e~e~~~lk~ 409 (794)
+...++.+..++..++.++.++...=-..++.+...+..+-..+.+-.-++..+++
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444445555555554443322234444444444444444455555555544
No 279
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=33.70 E-value=6e+02 Score=26.90 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
+.+++-.....+..+..++...+..+..++.....+++++.+.+..+++
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~e 131 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQE 131 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777777777777777777777777777766665
No 280
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=33.61 E-value=5.6e+02 Score=26.56 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 003810 188 KDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQL 267 (794)
Q Consensus 188 ~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~ 267 (794)
+.+|.+-|.-+|-....+...+..|..+....+.-++.... .-......+.....++..+|.++++.|.-|.+
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~-------~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEK 78 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQN-------ERERAHQELSKQNQDLSSQLSAAETRCSLLEK 78 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhh-------hhhcccchhhhccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 003810 268 SLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAE 342 (794)
Q Consensus 268 El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~ 342 (794)
+++-+.-++.....--..++ .++..+.-.+..-+..+-+=-.++.-++.+|+++..+-.-.-.-|..|+.....
T Consensus 79 QLeyMRkmv~~ae~er~~~l-e~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~e 152 (178)
T PF14073_consen 79 QLEYMRKMVESAEKERNAVL-EQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQE 152 (178)
T ss_pred HHHHHHHHHHHHHHhhhHHH-HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 281
>PRK11519 tyrosine kinase; Provisional
Probab=33.59 E-value=1e+03 Score=29.56 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 115 ETRGAAEKALEHLRVQYEEADAKAQEFSAK 144 (794)
Q Consensus 115 ~~l~~~~~~l~~l~~~~~~~e~~~~~l~~q 144 (794)
.++.=+...|..++..+..+|..+..+..+
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333335666666666666655555555443
No 282
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.35 E-value=1.1e+02 Score=24.46 Aligned_cols=39 Identities=10% Similarity=0.292 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Q 003810 184 VQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQ 222 (794)
Q Consensus 184 Lq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~q 222 (794)
|+.+.+.|...++.+-.....+.+....|.+++..++..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554444455555555555555544443
No 283
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=33.02 E-value=1.4e+02 Score=24.91 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHhHHHHHH
Q 003810 544 WEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRD 597 (794)
Q Consensus 544 ~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~E~e~~r~ 597 (794)
|...|.+++..|+.+++.=.. ....+.+.+.++......|+.++...+.
T Consensus 2 w~~Rl~ELe~klkaerE~R~~-----d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 2 WLLRLEELERKLKAEREARSL-----DRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHhHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566777666666653222 3345577788888888888877776553
No 284
>PLN02939 transferase, transferring glycosyl groups
Probab=32.68 E-value=1.2e+03 Score=30.24 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 003810 515 ALNNANQQIKSIEIKLDSMNT-KLQVE-KEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKD 590 (794)
Q Consensus 515 ~~ee~r~qir~lE~~l~~~~~-~~~~~-kk~~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~ 590 (794)
+..+++.++..||..|..+.. .+... .+.+++.+.-+++.++..-.++.++.+.. +..+.++|+.+..|..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 397 (977)
T PLN02939 325 QNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLY-----QESIKEFQDTLSKLKE 397 (977)
T ss_pred cchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 344677777777777777762 11111 12233344444444444444444433332 4444444444444444
No 285
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.25 E-value=3.8e+02 Score=24.22 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 003810 208 QCSALQQELERTRQQA 223 (794)
Q Consensus 208 ~~ssLq~qL~d~r~ql 223 (794)
....|.++..-|..++
T Consensus 54 en~qLk~E~~~WqerL 69 (79)
T PRK15422 54 ENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 286
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=32.03 E-value=6.4e+02 Score=26.70 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHH-----hHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDA-----LKAMDIERQQLRSANNKLRDNIEELCR 253 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe-----~~~~e~~re~Le~~~rkL~~e~eeLke 253 (794)
..+.+++..+..+...+.........+...++.....+.+....+... ..-..+.+..+.....-|...++.++.
T Consensus 92 ~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~ 171 (240)
T PF12795_consen 92 AQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQ 171 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666666666666666666666677777777777777666642 111233445555555556666665555
Q ss_pred hcchHHH
Q 003810 254 SFQPKED 260 (794)
Q Consensus 254 ~lee~e~ 260 (794)
.+.....
T Consensus 172 el~s~~~ 178 (240)
T PF12795_consen 172 ELLSNNN 178 (240)
T ss_pred HHHCcHH
Confidence 5554443
No 287
>PRK04325 hypothetical protein; Provisional
Probab=31.81 E-value=2.9e+02 Score=24.40 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 473 LEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIE 527 (794)
Q Consensus 473 Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE 527 (794)
|+..+.++|..+.+ .+....+|+.++...+++|+...+++.-+..++++++
T Consensus 7 ~e~Ri~~LE~klAf----QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAF----QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666665544 3455666666777666666666666656655555543
No 288
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=31.80 E-value=7.8e+02 Score=27.62 Aligned_cols=86 Identities=22% Similarity=0.243 Sum_probs=55.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcccccccccccCCCCchhHHHHHHHH
Q 003810 586 KRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLELRPADNHNDKDSTGITASQKQDVLNSIPSAAEQQILLLAR 665 (794)
Q Consensus 586 ~~L~~E~e~~r~~~~~~l~eke~el~kL~~e~~~l~~~L~~r~~~~~~~~~~~~~~~s~~~d~~~~~~~~~e~~~l~~a~ 665 (794)
-.|-.||++.++.+.+||...+++.+.|+.- ... + +++
T Consensus 203 vaLl~EmdkVK~EAmeiL~aRqkkAeeLkrl----td~-A------------------------~~M------------- 240 (302)
T PF07139_consen 203 VALLAEMDKVKAEAMEILDARQKKAEELKRL----TDR-A------------------------SQM------------- 240 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-H------------------------hhc-------------
Confidence 3466699999999999999888888877643 110 0 011
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhHHHHHHHHhhhc
Q 003810 666 QQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNMERSKKREGVDMTYLKNVILKLLET 736 (794)
Q Consensus 666 ~~a~re~El~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir~ler~~~re~~n~eYLKNV~l~fl~~ 736 (794)
.|++|..||..|.+.-. .+..-++|.+. .|=..|.+-|+.+|..|=..
T Consensus 241 ----sE~Ql~ELRadIK~fvs---------------~rk~de~lg~~----~rf~~d~~~l~~~i~~~g~v 288 (302)
T PF07139_consen 241 ----SEEQLAELRADIKHFVS---------------ERKYDEELGRA----ARFTCDPEQLKKSIMSFGEV 288 (302)
T ss_pred ----CHHHHHHHHHHHHHHhh---------------hhhhHHHHhHh----hhcccCHHHHHHHHHhcCcc
Confidence 15566666666666443 23344566654 34467899999988887553
No 289
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=31.39 E-value=9.8e+02 Score=28.67 Aligned_cols=20 Identities=40% Similarity=0.528 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLR 196 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~le 196 (794)
++.+|..|..++..+.....
T Consensus 256 a~~~i~~L~~~l~~l~~~~~ 275 (582)
T PF09731_consen 256 AKERIDALQKELAELKEEEE 275 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44666666666655555443
No 290
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=31.38 E-value=1.1e+03 Score=29.18 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=32.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 003810 202 AERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKE 259 (794)
Q Consensus 202 ~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e 259 (794)
+..+.--+..-...|.-+-..++.+.. -+..|++.+-.|..++.+|+-++-+.+
T Consensus 141 IrDLE~cie~kr~kLnatEEmLQqell----srtsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 141 IRDLETCIEEKRNKLNATEEMLQQELL----SRTSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHH----hhhhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 333333333344444444555554443 335788888888888888887776665
No 291
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=31.28 E-value=7.9e+02 Score=27.52 Aligned_cols=47 Identities=11% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
.-+++|-.++..+.+.|..+--..++|-...++|.-|+.-++..+++
T Consensus 77 ~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee 123 (302)
T PF09738_consen 77 ASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEE 123 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888887777778888888888888777666654
No 292
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=30.98 E-value=6.8e+02 Score=26.67 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 003810 137 KAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 137 ~~~~l~~ql~e~q~kl~ee 155 (794)
|+..+..++......|..+
T Consensus 6 KL~~i~e~~~~f~~~le~e 24 (247)
T PF06705_consen 6 KLASINERFSGFESDLENE 24 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555566555666555
No 293
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=30.65 E-value=6e+02 Score=27.41 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=18.7
Q ss_pred chhhhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 003810 87 GQESREVVDVKELRERIESLSKELQEEKETRG 118 (794)
Q Consensus 87 ~~~~~~~~~v~el~eq~e~l~r~~ek~k~~l~ 118 (794)
|....+-..|+.|.++++.|++..+.-.+-+.
T Consensus 61 ~~~~~~e~~le~Le~el~~l~~~~~~~~~~~~ 92 (256)
T PF14932_consen 61 KLLELEEEDLEALEEELEALQEYKELYEQLRN 92 (256)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333456778888888888666433333333
No 294
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=30.19 E-value=6.4e+02 Score=26.45 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=8.0
Q ss_pred CCchHHHHHHHHH
Q 003810 51 NDNNEQLLGLVME 63 (794)
Q Consensus 51 ~~~~~~~~~~~~~ 63 (794)
..|-.+|.+|+-.
T Consensus 25 ~g~vaEL~qli~~ 37 (192)
T PF11180_consen 25 QGNVAELQQLIQD 37 (192)
T ss_pred cccHHHHHHHHHc
Confidence 4455777777643
No 295
>PRK12704 phosphodiesterase; Provisional
Probab=30.06 E-value=1e+03 Score=28.53 Aligned_cols=10 Identities=30% Similarity=0.212 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 003810 261 ALEALQLSLQ 270 (794)
Q Consensus 261 a~~~Lq~El~ 270 (794)
+...|-..+.
T Consensus 155 a~~~l~~~~~ 164 (520)
T PRK12704 155 AKEILLEKVE 164 (520)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 296
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.02 E-value=5.4e+02 Score=25.20 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHhhhhhHHH
Q 003810 93 VVDVKELRERIESLSKELQEE 113 (794)
Q Consensus 93 ~~~v~el~eq~e~l~r~~ek~ 113 (794)
+++|+.++.|++++.-.+...
T Consensus 42 ~~A~~~v~kql~~vs~~l~~t 62 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSST 62 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777665333
No 297
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.86 E-value=4.2e+02 Score=23.96 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003810 268 SLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 268 El~~l~~~L~~~r~~lq 284 (794)
+...+.++...|+..+.
T Consensus 54 en~qLk~E~~~WqerLr 70 (79)
T PRK15422 54 ENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444333
No 298
>PRK00295 hypothetical protein; Provisional
Probab=29.68 E-value=3.6e+02 Score=23.37 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 474 EEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIE 527 (794)
Q Consensus 474 e~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE 527 (794)
+..+.++|..+.+ .+....+|+.++...+++|+...+++..+..++++++
T Consensus 4 e~Ri~~LE~kla~----qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 4 EERVTELESRQAF----QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555533 3455666677777777777766666666666666654
No 299
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.61 E-value=9.8e+02 Score=28.11 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH-HhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND-ALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALE 263 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE-e~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~ 263 (794)
+.+...|.+.++++........++..++-++-++.|..-.. .++.+ ..+.-.+-.|....+.|+.++=..-+.+.
T Consensus 172 ~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l----~al~llv~tLee~~~~LktqIV~sPeKL~ 247 (446)
T KOG4438|consen 172 EEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKIL----NALKLLVVTLEENANCLKTQIVQSPEKLK 247 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 67778888888888888999999999999998888877663 44444 23334444555555556665555555555
Q ss_pred HHHHHHHHH
Q 003810 264 ALQLSLQEK 272 (794)
Q Consensus 264 ~Lq~El~~l 272 (794)
....++.++
T Consensus 248 ~~leemk~~ 256 (446)
T KOG4438|consen 248 EALEEMKDL 256 (446)
T ss_pred HHHHHHHHH
Confidence 555555555
No 300
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.31 E-value=4.6e+02 Score=24.17 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 175 KRAKQRIQEVQKEKDDLETRLRDV 198 (794)
Q Consensus 175 ~~~kqriqeLq~E~~~L~e~leE~ 198 (794)
.+|..+|+.|+.++..+....+.+
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L 68 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQL 68 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666665554433
No 301
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=29.12 E-value=9.9e+02 Score=28.01 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 003810 243 KLRDNIEELCRSFQPKEDALEALQLSLQEKDQM 275 (794)
Q Consensus 243 kL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~ 275 (794)
.++.+.+.++..+...+..+++||.+...++-+
T Consensus 38 ~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 38 ILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555666555555333
No 302
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.86 E-value=1.3e+03 Score=29.26 Aligned_cols=207 Identities=19% Similarity=0.225 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 110 LQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKD 189 (794)
Q Consensus 110 ~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~ 189 (794)
+||...+.-.+...|+.....+.-.+-++-.|..-|+|-=..|+-.+++-+..+.+...++.+-+ ..-+.
T Consensus 19 wekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~----------e~~~~ 88 (769)
T PF05911_consen 19 WEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEW----------EKIKS 88 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHH----------HHHHH
Confidence 66666666667777777777777777777777777777777777776666666666655555542 22222
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 003810 190 DLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSL 269 (794)
Q Consensus 190 ~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El 269 (794)
.|...|.+.... +..+.++-.-+...+.+...-+ ..|.........++..|+.+|+..+-....|+-++
T Consensus 89 ~le~~l~e~~~~-------l~~~~~e~~~l~~~l~~~~~~i----~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 89 ELEAKLAELSKR-------LAESAAENSALSKALQEKEKLI----AELSEEKSQAEAEIEDLMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 2222222222222222222211 34555555556666666666666665555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHhHHHH
Q 003810 270 QEKDQMLEDMRTLLQAAEEKRQASIAELSAKH----QKNLESLEAQLADAVSDRSK---ATETISSLQVLVAEKETTIAE 342 (794)
Q Consensus 270 ~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~----q~e~E~LEa~~~E~~~~~~k---l~~~~~rLqeeLeelerEnK~ 342 (794)
.-+.-+|+= |+.--. . -++. ++.-.|. -+.|..|+++|.-+..-+.| --.++.....+++.+-+....
T Consensus 158 ~~~~kelei-r~~E~~-~-~~~~--ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~ 232 (769)
T PF05911_consen 158 HVLSKELEI-RNEERE-Y-SRRA--AEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGE 232 (769)
T ss_pred HHHHHHHHH-HHHHHH-H-hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhcccccc
Confidence 444333322 111100 0 0111 1222222 25666666666666552222 225777788888877444333
No 303
>PF13166 AAA_13: AAA domain
Probab=28.85 E-value=1.1e+03 Score=28.65 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=8.2
Q ss_pred chhHHHHHHHHhhhc
Q 003810 722 DMTYLKNVILKLLET 736 (794)
Q Consensus 722 n~eYLKNV~l~fl~~ 736 (794)
+.-++-|+|-++|+.
T Consensus 632 ~~~~~~N~~RriLE~ 646 (712)
T PF13166_consen 632 SAYNIPNVMRRILEA 646 (712)
T ss_pred hHHhhHHHhHHHHHH
Confidence 455555666655553
No 304
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.69 E-value=5.5e+02 Score=24.94 Aligned_cols=97 Identities=22% Similarity=0.300 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 003810 121 EKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKR-AKQRIQEVQKEKDDLETRLRDVG 199 (794)
Q Consensus 121 ~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~-~kqriqeLq~E~~~L~e~leE~e 199 (794)
-+.+..|+..+...--.++.++.+|+|...=+ ++++.+.+.= ..=-.+|-+-++ .| ..=.++|..+++-++
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al-~Ele~l~eD~-~vYk~VG~llvk~~k------~~~~~eL~er~E~Le 83 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKAL-EELEKLDEDA-PVYKKVGNLLVKVSK------EEAVDELEERKETLE 83 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccc-HHHHHhhhHHhhhhH------HHHHHHHHHHHHHHH
Confidence 34444555555555555666777777644333 3334444331 112256666332 11 122345556666666
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 200 ETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 200 ~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
-.+..+.++...++.++..++..+..
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777666666654
No 305
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=28.68 E-value=5.7e+02 Score=25.10 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHH
Q 003810 182 QEVQKEKDDLETRLRDVGETAERASSQCSA 211 (794)
Q Consensus 182 qeLq~E~~~L~e~leE~e~~~~~lsk~~ss 211 (794)
+.++.|.++|.-.|.+.+.++......+-.
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455666777777766666666554444433
No 306
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.44 E-value=92 Score=29.16 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhHHHHHHHhhhHHHHH
Q 003810 179 QRIQEVQKEKDDLETRL-RDVGETAERASSQCSALQQ 214 (794)
Q Consensus 179 qriqeLq~E~~~L~e~l-eE~e~~~~~lsk~~ssLq~ 214 (794)
+....+..|+.+|...| ++++.-++...+....+..
T Consensus 15 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~ 51 (100)
T PF06428_consen 15 QEKEQIESELEELTASLFEEANKMVADARRERAALEE 51 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566666666555 5555555544444443333
No 307
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.40 E-value=9.9e+02 Score=27.77 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003810 306 ESLEAQLADAVSDRSKATETISSLQVLV 333 (794)
Q Consensus 306 E~LEa~~~E~~~~~~kl~~~~~rLqeeL 333 (794)
..+..++.++...+..+...+..++..+
T Consensus 287 ~~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 287 AKVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333444444333
No 308
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=28.37 E-value=7.3e+02 Score=26.24 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 186 KEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 186 ~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
-|+.-|.-+|.+....++.-...+.+|-++|.+++..+..
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~ 49 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRN 49 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3566667777777777776677777777777777777664
No 309
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.15 E-value=7.7e+02 Score=26.45 Aligned_cols=17 Identities=6% Similarity=0.005 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003810 237 LRSANNKLRDNIEELCR 253 (794)
Q Consensus 237 Le~~~rkL~~e~eeLke 253 (794)
|+..++.+..+.+..+.
T Consensus 65 lE~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 65 LENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 310
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=28.13 E-value=1e+03 Score=27.97 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=15.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 312 LADAVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 312 ~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
+.-++.+++...+.+....+..+.+...-.++
T Consensus 349 ~q~~~kkrqnaekql~~Ake~~eklkKKrssv 380 (575)
T KOG4403|consen 349 VQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSV 380 (575)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhcch
Confidence 33444455555555555555555554444444
No 311
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.70 E-value=3.7e+02 Score=22.54 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHH
Q 003810 296 ELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTI 340 (794)
Q Consensus 296 E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEn 340 (794)
..+.+-...++.|+..+..+......+...+..|...+..|..+|
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555677888888888888877777777777777777666554
No 312
>PRK11546 zraP zinc resistance protein; Provisional
Probab=27.48 E-value=2.8e+02 Score=27.72 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
+++..-+.|++.|...=.-...++..+.++++.|+++|.+.|-++..
T Consensus 68 qqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 68 QQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555444445666778888888888888877777665
No 313
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=27.23 E-value=1.4e+03 Score=29.03 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003810 235 QQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLAD 314 (794)
Q Consensus 235 e~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E 314 (794)
-.|+....-|+..+.+....++-.+.....|.+-++.. .++.++-..-..+|.+. +-+-|.....+...+.-++++
T Consensus 430 ~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q---~~Enk~~~~~~~ekd~~-l~~~kq~~d~e~~rik~ev~e 505 (861)
T PF15254_consen 430 FSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQ---KEENKRLRKMFQEKDQE-LLENKQQFDIETTRIKIEVEE 505 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777777777777666 44433333333334433 344455555555555555555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 315 AVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 315 ~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
+-. .+..++--++.-+.||..|
T Consensus 506 al~-------~~k~~q~kLe~sekEN~iL 527 (861)
T PF15254_consen 506 ALV-------NVKSLQFKLEASEKENQIL 527 (861)
T ss_pred HHH-------HHHHHhhhHHHHHhhhhHh
Confidence 544 6667777788888888887
No 314
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.09 E-value=1.1e+03 Score=27.93 Aligned_cols=259 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHH
Q 003810 90 SREVVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSK 169 (794)
Q Consensus 90 ~~~~~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~ 169 (794)
+.+....++....++.+.+.-+.--..+.--++.|..|+.-+.+.-+++-.|..|......-|-+.-..|...+.-....
T Consensus 261 es~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e 340 (521)
T KOG1937|consen 261 ESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE 340 (521)
T ss_pred HhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 003810 170 FTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIE 249 (794)
Q Consensus 170 ~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~e 249 (794)
-.++ .+|++++.++..+.+.++.-+.-...+-+.++++--.+. |+-|...+. .+-.-+|++..++-
T Consensus 341 ~~e~-----~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~--rk~ytqrik-------Ei~gniRKq~~DI~ 406 (521)
T KOG1937|consen 341 DEEI-----RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ--RKVYTQRIK-------EIDGNIRKQEQDIV 406 (521)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH--HHHHHHHHH-------HHHhHHHHHHHHHH
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHH
Q 003810 250 ELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQ--KNLESLEAQLADAVSDRSKATETIS 327 (794)
Q Consensus 250 eLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q--~e~E~LEa~~~E~~~~~~kl~~~~~ 327 (794)
-+-. .-..||.++......|.+.=......+-+-.+--+-.+..+. +.+-.-=.++.++-..-..+.+++.
T Consensus 407 Kil~-------etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revr 479 (521)
T KOG1937|consen 407 KILE-------ETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVR 479 (521)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 328 SLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAA 382 (794)
Q Consensus 328 rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~ 382 (794)
.|...|. +......+ .+++.+.+++.++......+..+.+.+
T Consensus 480 dlE~qI~----------~E~~k~~l---~slEkl~~Dyqairqen~~L~~~iR~~ 521 (521)
T KOG1937|consen 480 DLESQIY----------VEEQKQYL---KSLEKLHQDYQAIRQENDQLFSEIRLK 521 (521)
T ss_pred HHHHHHh----------HHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHhcC
No 315
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.08 E-value=7.1e+02 Score=25.70 Aligned_cols=105 Identities=19% Similarity=0.300 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 003810 164 TELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNK 243 (794)
Q Consensus 164 ~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rk 243 (794)
.++++-+++| .+-++|+..|..-+.-|.++++........|+..+..+++++..++..+. ..-..
T Consensus 60 ~dLe~~l~rL-eEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~--------------~ke~~ 124 (182)
T PF15035_consen 60 PDLEEALIRL-EEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE--------------QKEAE 124 (182)
T ss_pred ccHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
Confidence 4566667777 24567888888888888888888777777777777777776665444443 22334
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 244 LRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLL 283 (794)
Q Consensus 244 L~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~l 283 (794)
+..+-..+..-+......+-.|=+++..+.-+..+++...
T Consensus 125 ~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T 164 (182)
T PF15035_consen 125 WREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT 164 (182)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544333344443433333333333
No 316
>PRK00736 hypothetical protein; Provisional
Probab=27.03 E-value=3.9e+02 Score=23.19 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 476 ALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIE 527 (794)
Q Consensus 476 ~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE 527 (794)
.+.++|..+. -.+.+..+|+.++...++.|+...+++.-+..++++++
T Consensus 6 Ri~~LE~kla----fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 6 RLTELEIRVA----EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444443 33456667777777777777766666666666665543
No 317
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.96 E-value=2.7e+02 Score=32.98 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 003810 603 MEEKDNEISRLLDDNKNLHRSL 624 (794)
Q Consensus 603 l~eke~el~kL~~e~~~l~~~L 624 (794)
..+.+.+|+.|..++..|+..+
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 318
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.93 E-value=2.8e+02 Score=23.95 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003810 182 QEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAN 224 (794)
Q Consensus 182 qeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qle 224 (794)
-+|+.-+.=....+++++..+..-.+.+..|+.+|..+..++.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443
No 319
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=26.62 E-value=1.2e+03 Score=28.03 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 003810 358 VETVKGELA 366 (794)
Q Consensus 358 ~E~~~~el~ 366 (794)
++-++.++.
T Consensus 252 fdp~rreia 260 (514)
T TIGR03319 252 FDPVRREIA 260 (514)
T ss_pred CchHHHHHH
Confidence 344445544
No 320
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.31 E-value=5e+02 Score=23.59 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003810 293 SIAELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVA 334 (794)
Q Consensus 293 ~L~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLe 334 (794)
.+.++..........+......+.....++...+...+..+.
T Consensus 62 ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 62 LLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555554
No 321
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=25.90 E-value=6.6e+02 Score=24.86 Aligned_cols=91 Identities=12% Similarity=0.242 Sum_probs=54.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH---------
Q 003810 103 IESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL--------- 173 (794)
Q Consensus 103 ~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l--------- 173 (794)
+|-++|-+++.+++|.....++.+++.-++.+.+-.-.--.-|.++..++.+. .++++
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~ea-------------e~k~~~~~a~~P~~ 69 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEA-------------EIKQDEFFANNPPH 69 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHCCCCTT-TTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------HhcccccccCCCcc
Confidence 45567777888888888888888888888777766322222233333333332 34443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003810 174 --HKRAKQRIQEVQKEKDDLETRLRDVGETAERAS 206 (794)
Q Consensus 174 --h~~~kqriqeLq~E~~~L~e~leE~e~~~~~ls 206 (794)
|-=|..+++.++.+..+=...|.-.+..+..++
T Consensus 70 ~~~~~wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~ 104 (136)
T PF11570_consen 70 EYGRGWQLKVRRAQKDVQNKQNKLKAAQKELNAAD 104 (136)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333777788777777666655544444444333
No 322
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=25.71 E-value=1.1e+03 Score=27.40 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 003810 509 LAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRL 588 (794)
Q Consensus 509 l~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L 588 (794)
++..-.++.++++....|+++.+.+....+.+.. -+.+-=++-|=|+++||.|+... ++-.+..|..|
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~----fi~etLQEERyR~erLEEqLNdl--------teLqQnEi~nL 329 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYK----FIAETLQEERYRYERLEEQLNDL--------TELQQNEIANL 329 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHH
Q ss_pred HHhHHHHHHHHH-----------HHHHHHHHHHHHHH
Q 003810 589 KDEHDSFRDLAD-----------RMMEEKDNEISRLL 614 (794)
Q Consensus 589 ~~E~e~~r~~~~-----------~~l~eke~el~kL~ 614 (794)
+.++...-.+.. +.++....+|.+|.
T Consensus 330 KqElasmeervaYQsyERaRdIqEalEscqtrisKlE 366 (455)
T KOG3850|consen 330 KQELASMEERVAYQSYERARDIQEALESCQTRISKLE 366 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 323
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=25.58 E-value=1.9e+02 Score=30.68 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHhHhHHHHHHHHhhhhhHHhhhchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 003810 442 EFSSYKIRAHALLQKKDAELVAANDTEQLRALEEALKETEKEMSLVSAEKDKALQELQEAL 502 (794)
Q Consensus 442 Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~Le~~l~E~E~~l~~a~~er~ra~~elq~~~ 502 (794)
||+..|+.|.+=+++++ ..+..+.+=|..|..+||+|..++|.++
T Consensus 16 ELE~~k~~A~EElRk~e----------------eqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 16 ELEATKMEANEELRKRE----------------EQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 324
>PRK09343 prefoldin subunit beta; Provisional
Probab=25.54 E-value=6e+02 Score=24.32 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 233 ERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
++....+++..|...++-+...+...+.....|+..+.++
T Consensus 65 v~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666555555555555445555555444
No 325
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.24 E-value=1.1e+03 Score=27.05 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHH
Q 003810 235 QQLRSANNKLRDNIEELCRSFQPKE---DALEALQLSLQEKDQMLEDMRTLLQAAE------EKRQASIAELSAKHQKNL 305 (794)
Q Consensus 235 e~Le~~~rkL~~e~eeLke~lee~e---~a~~~Lq~El~~l~~~L~~~r~~lq~~~------Ekkq~~L~E~K~k~q~e~ 305 (794)
.-|++.++++.+.-++|+.=.+..+ ....+|+-+-+++-.+|.+.+..+...- |....-+.|....++-.+
T Consensus 71 ~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 71 QLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 4577888888877777665444444 4567888888888777777666554322 111223444444445555
Q ss_pred HHHHHHHHHHHHh
Q 003810 306 ESLEAQLADAVSD 318 (794)
Q Consensus 306 E~LEa~~~E~~~~ 318 (794)
+++..++.++..+
T Consensus 151 ~~l~~e~~Ekeee 163 (401)
T PF06785_consen 151 DALQQECGEKEEE 163 (401)
T ss_pred HHHHHHHhHhHHH
Confidence 5555555555553
No 326
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.88 E-value=4.2e+02 Score=23.24 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 473 LEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIE 527 (794)
Q Consensus 473 Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE 527 (794)
++.-+.++|..+.+- +.+...|+.++...+++|+...+++..+..++++++
T Consensus 6 ~e~Ri~~LE~~lafQ----e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQ----EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556666666666443 455566666666666666666666666666655543
No 327
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=24.74 E-value=1.1e+03 Score=26.89 Aligned_cols=294 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHhhhhhHHHHHhhhhcccCCCCCcchhhhh------hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 003810 52 DNNEQLLGLVMELKLQNEFLKSQFEGLNTLRPEDDGQESRE------VVDVKELRERIESLSKELQEEKETRGAAEKALE 125 (794)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~ 125 (794)
.+.++++..+.+--.+|.-+++-+-..-.|----+-.++.+ .-....+..+++.|=|.+ -.
T Consensus 21 ~~~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q~l~kt~larsKLeelCRel-------------Qr 87 (391)
T KOG1850|consen 21 EKVEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKEKRNNQILLKTELARSKLEELCREL-------------QR 87 (391)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003810 126 HLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERA 205 (794)
Q Consensus 126 ~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~l 205 (794)
+-..-+.++=..++..+..++++..++.--++..+..+.+-+++--+| .++--.|-..+..|.+++.+.+..+...
T Consensus 88 ~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~kl----re~NieL~eKlkeL~eQy~~re~hidk~ 163 (391)
T KOG1850|consen 88 ANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKL----REDNIELSEKLKELGEQYEEREKHIDKQ 163 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 206 SSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQA 285 (794)
Q Consensus 206 sk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~ 285 (794)
...+. ++.++.+++.+--.-...+ .........+-.......++..++...-.-.+|..++.--..-.++++..+..
T Consensus 164 ~e~ke-l~~ql~~aKlq~~~~l~a~--~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~K 240 (391)
T KOG1850|consen 164 IQKKE-LWEQLGKAKLQEIKLLTAK--LEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAK 240 (391)
T ss_pred HHHHH-HHHHHhHHHHHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhH
Q 003810 286 AEEKRQASIAELSAKHQKNLESLEAQLADAVS-------DRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAV 358 (794)
Q Consensus 286 ~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~-------~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~ 358 (794)
.. |+=.++..+++.....+-.+.. +....-+++=.|-.+-...+.++++|.. .+
T Consensus 241 SN--------E~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~-----------ki 301 (391)
T KOG1850|consen 241 SN--------ELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQK-----------KI 301 (391)
T ss_pred hH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHH-----------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 359 ETVKGELAHLKREHEKEKESWEAASQAFRK 388 (794)
Q Consensus 359 E~~~~el~~l~kk~ek~~~e~k~~~~el~~ 388 (794)
.-+++|-+.+...+.++-..+..+++
T Consensus 302 ----q~LekLcRALq~ernel~~~~~~~e~ 327 (391)
T KOG1850|consen 302 ----QRLEKLCRALQTERNELNKKLEDLEA 327 (391)
T ss_pred ----HHHHHHHHHHHhccccHHHHHHHHhc
No 328
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.61 E-value=5.5e+02 Score=23.53 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=6.4
Q ss_pred hhHHhhHHHHHHHH
Q 003810 160 EDKYTELDSKFTRL 173 (794)
Q Consensus 160 ~~~~~el~~~~~~l 173 (794)
...+..+...||.+
T Consensus 49 r~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 49 RAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH
Confidence 44444444444444
No 329
>PLN02939 transferase, transferring glycosyl groups
Probab=24.20 E-value=1.7e+03 Score=29.07 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003810 117 RGAAEKALEHLRVQYEEADAKA 138 (794)
Q Consensus 117 l~~~~~~l~~l~~~~~~~e~~~ 138 (794)
-+++...++-|..-+++.|+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~ 186 (977)
T PLN02939 165 KEALQGKINILEMRLSETDARI 186 (977)
T ss_pred HHHHHhhHHHHHHHhhhhhhhh
Confidence 3445566666666666666666
No 330
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.96 E-value=1.4e+03 Score=27.91 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=10.3
Q ss_pred hhhHHHHHhhhhcccCCC
Q 003810 66 LQNEFLKSQFEGLNTLRP 83 (794)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~ 83 (794)
-.-+||+.|++-+..+.+
T Consensus 185 ~~~d~L~fq~~Ele~~~l 202 (557)
T COG0497 185 QRADLLQFQLEELEELNL 202 (557)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 334566666666655555
No 331
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.86 E-value=5.9e+02 Score=25.52 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 303 KNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAA 382 (794)
Q Consensus 303 ~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~ 382 (794)
..+.....++..+.+ .+..+..+|.+.+..++.|... ..+++.++..+..++.+..+...++++.
T Consensus 13 k~i~~~K~~~~~~~~-------e~~~~k~ql~~~d~~i~~Lk~~--------~~d~eeLk~~i~~lq~~~~~~~~~~e~~ 77 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKE-------ERDNLKTQLKEADKQIKDLKKS--------AKDNEELKKQIEELQAKNKTAKEEYEAK 77 (155)
T ss_pred CcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 5555555566555555555431 1355666666666666666666655555
Q ss_pred HHHH
Q 003810 383 SQAF 386 (794)
Q Consensus 383 ~~el 386 (794)
+..+
T Consensus 78 l~~~ 81 (155)
T PF06810_consen 78 LAQM 81 (155)
T ss_pred HHHH
Confidence 5444
No 332
>PF15294 Leu_zip: Leucine zipper
Probab=23.82 E-value=1e+03 Score=26.39 Aligned_cols=128 Identities=21% Similarity=0.353 Sum_probs=87.7
Q ss_pred hhhhHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHhhHHH
Q 003810 92 EVVDVKELRERIESLSKEL--QEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQK-LGQEIKGHEDKYTELDS 168 (794)
Q Consensus 92 ~~~~v~el~eq~e~l~r~~--ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~k-l~ee~~~l~~~~~el~~ 168 (794)
++-.+++..+=++-|+.++ +-+..-.-.....+--|+.-...+++--=+|...+.+++.+ |-++|...+.. ++..
T Consensus 28 ~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~diselEn~eLLe~i~~~E~~--~~~~ 105 (278)
T PF15294_consen 28 DTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRELLEQIAEFEKQ--EFTS 105 (278)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh--hhcc
Confidence 3444555566677777773 11222222266677778888888888877788888888777 66776644332 2222
Q ss_pred HH--------HHH---HH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Q 003810 169 KF--------TRL---HK-----RAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQ 221 (794)
Q Consensus 169 ~~--------~~l---h~-----~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~ 221 (794)
.. .+| .- -..-.|..|+.|++.|..++-..+.....+-+..+.++.+|.+++.
T Consensus 106 ~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 106 SFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred cCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 112 10 1446688889999999999999999999999999999999999988
No 333
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=23.79 E-value=1.3e+03 Score=27.61 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHH
Q 003810 92 EVVDVKELRERIESLSKELQEEK 114 (794)
Q Consensus 92 ~~~~v~el~eq~e~l~r~~ek~k 114 (794)
-...|.+....+.+|.+.+.+-+
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~ 271 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELK 271 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 36668888888888888764333
No 334
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=23.76 E-value=5.4e+02 Score=23.14 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 003810 212 LQQELERTRQQAN 224 (794)
Q Consensus 212 Lq~qL~d~r~qle 224 (794)
|......+|.+++
T Consensus 51 LE~~h~kmK~~YE 63 (79)
T PF08581_consen 51 LEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 335
>PRK00736 hypothetical protein; Provisional
Probab=23.71 E-value=4.7e+02 Score=22.68 Aligned_cols=39 Identities=5% Similarity=0.187 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQA 223 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~ql 223 (794)
+.-+.-....+++++..+.+-.+++..|+.+|..+..++
T Consensus 11 E~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 11 EIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444443333
No 336
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.68 E-value=4.2e+02 Score=32.09 Aligned_cols=36 Identities=36% Similarity=0.412 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 003810 233 ERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLS 268 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~E 268 (794)
.|+.|.+.+.++...+++|+..+...+..+.+|..+
T Consensus 101 krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ 136 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRLIPQKQLELSALKGE 136 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 334444444444444444444333333333333333
No 337
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=23.13 E-value=1.2e+03 Score=26.74 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=17.1
Q ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 197 DVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 197 E~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
..-..+..+...+..++.+|..|...+..
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~~L~~ 361 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEELLNK 361 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666654
No 338
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=23.13 E-value=3.5e+02 Score=27.74 Aligned_cols=72 Identities=18% Similarity=0.375 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 003810 187 EKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQ 266 (794)
Q Consensus 187 E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq 266 (794)
.++.+...|+.+...+..-+..+..+-..|.+++..+....+ .|....+.+...+......+..|+
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~--------------~l~~~~~~l~~~l~~~~g~I~~L~ 169 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSR--------------NLKTDVDELQSILAGENGDIPQLQ 169 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHhcccCCHHHHH
Confidence 344455555555555555555555555556555555554333 333333444444444444445555
Q ss_pred HHHHHH
Q 003810 267 LSLQEK 272 (794)
Q Consensus 267 ~El~~l 272 (794)
.+|...
T Consensus 170 ~~I~~~ 175 (184)
T PF05791_consen 170 KQIENL 175 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 339
>PRK00295 hypothetical protein; Provisional
Probab=23.03 E-value=4.9e+02 Score=22.54 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=10.0
Q ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHH
Q 003810 194 RLRDVGETAERASSQCSALQQELERT 219 (794)
Q Consensus 194 ~leE~e~~~~~lsk~~ssLq~qL~d~ 219 (794)
.+++++..+.+-.+++..|+.+|..+
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444433333333
No 340
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.53 E-value=1.1e+03 Score=26.10 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003810 233 ERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQL 312 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~ 312 (794)
.-..+...+..+...++.++..+.........|..-+.+..++|++.++.++..+ -.|=-+..+-+.++.++
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq--------~vRPAfmdEyEklE~EL 234 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ--------SVRPAFMDEYEKLEEEL 234 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcChHHHHHHHHHHHHH
Confidence 3356666777777777777777777777777777777777777777666666433 33334456666666666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 003810 313 ADAVSDRSKATETISSLQVLVA 334 (794)
Q Consensus 313 ~E~~~~~~kl~~~~~rLqeeLe 334 (794)
..+-..+..=-+.+.=|..+++
T Consensus 235 ~~lY~~Y~~kfRNl~yLe~qle 256 (267)
T PF10234_consen 235 QKLYEIYVEKFRNLDYLEHQLE 256 (267)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 6665533333333333333333
No 341
>PRK00846 hypothetical protein; Provisional
Probab=22.48 E-value=5.6e+02 Score=23.04 Aligned_cols=51 Identities=29% Similarity=0.388 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 473 LEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIE 527 (794)
Q Consensus 473 Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE 527 (794)
|+.-+.++|..+.+ .+.+..+|+.++...++.|+...+++.-+..++++++
T Consensus 11 le~Ri~~LE~rlAf----Qe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSF----QEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666655543 4556666777777677667766666666666666555
No 342
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.46 E-value=7e+02 Score=24.00 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 003810 239 SANNKLRDNIEELCRSF 255 (794)
Q Consensus 239 ~~~rkL~~e~eeLke~l 255 (794)
+++.-|.+.++.|...+
T Consensus 94 eA~~~l~~~~~~l~~~~ 110 (140)
T PRK03947 94 EAIEILDKRKEELEKAL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 343
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.42 E-value=1.4e+03 Score=27.53 Aligned_cols=140 Identities=19% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHH
Q 003810 100 RERIESLSKE---LQEEKETRGAAEKALEHLRVQYEEADAKAQ-EFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHK 175 (794)
Q Consensus 100 ~eq~e~l~r~---~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~-~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~ 175 (794)
.+++|.|+.- ++++--.+..-..-++.-..-+.+.+...- .+.+++-.+..++.-. ...+........+.
T Consensus 158 ~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~----~eel~~kt~el~~q-- 231 (596)
T KOG4360|consen 158 RELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSG----QEELQSKTKELSRQ-- 231 (596)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003810 176 RAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSF 255 (794)
Q Consensus 176 ~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~l 255 (794)
+.|+..|..+|-++..++..+.-++.-+-.-|...+..... +....+.+++...++...+
T Consensus 232 ---------~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~q-----------l~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 232 ---------QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQ-----------LTAELEELEDKYAECMQML 291 (596)
T ss_pred ---------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHH
Q ss_pred chHHHHHHHH
Q 003810 256 QPKEDALEAL 265 (794)
Q Consensus 256 ee~e~a~~~L 265 (794)
.+.++.++.|
T Consensus 292 ~EaeeELk~l 301 (596)
T KOG4360|consen 292 HEAEEELKCL 301 (596)
T ss_pred HHHHHHHHhh
No 344
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=22.37 E-value=1.3e+03 Score=26.90 Aligned_cols=17 Identities=12% Similarity=0.280 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003810 135 DAKAQEFSAKLAEAQQK 151 (794)
Q Consensus 135 e~~~~~l~~ql~e~q~k 151 (794)
......+..++..++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~ 112 (457)
T TIGR01000 96 ENQKQLLEQQLDNLKDQ 112 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555444433
No 345
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=22.31 E-value=1.1e+03 Score=26.06 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=52.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhH--HHHHHHH---
Q 003810 99 LRERIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTEL--DSKFTRL--- 173 (794)
Q Consensus 99 l~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el--~~~~~~l--- 173 (794)
|.+-|.+|+-..++=|+.+.-...-=..|-.-++.++.....+.+++..+.....=..--+...+.+= .--|.+|
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~e 185 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGE 185 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHH
Confidence 45566666666555566666655555567777888888888888888777665333222222222221 1123333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003810 174 HKRAKQRIQEVQKEKDD 190 (794)
Q Consensus 174 h~~~kqriqeLq~E~~~ 190 (794)
-...|.++.++|.++..
T Consensus 186 le~tk~Klee~QnelsA 202 (330)
T KOG2991|consen 186 LEQTKDKLEEAQNELSA 202 (330)
T ss_pred HHHHHHHHHHHHhhhhe
Confidence 22256667777776644
No 346
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.08 E-value=9.7e+02 Score=25.46 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
.+...+..|...++.++.+++.....+..+...+...
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444
No 347
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=22.02 E-value=1.6e+03 Score=27.97 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 003810 324 ETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 324 ~~~~rLqeeLeelerEnK~L 343 (794)
....+|-.+|-++.--|..+
T Consensus 300 ~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIRVF 319 (670)
T ss_pred HHHHHHHHHHHHhhcCceEE
Confidence 44455555555554444443
No 348
>smart00338 BRLZ basic region leucin zipper.
Probab=21.97 E-value=3.5e+02 Score=22.68 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 671 EEELAQSQRHILALQEELEELERENRLHSQQEAMLKEE 708 (794)
Q Consensus 671 e~El~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~e 708 (794)
-..+..+...+..|...+.+|...+..+..++..|+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554443
No 349
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=21.54 E-value=1.3e+03 Score=26.83 Aligned_cols=270 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHHh-HHHHhhhhhhhHHHH------HHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHhhhchHHHHHH
Q 003810 400 TEIEAAKLRSQLES-ELSVQNQLLSTRDAE------LMAAKQEIIHLEREFSSYKIRAHALLQKKDAELVAANDTEQLRA 472 (794)
Q Consensus 400 ~e~e~~~lk~e~E~-el~~~~~~l~~~~~~------l~~~q~e~~~le~Ele~~K~RahaLlk~K~~~l~aa~E~e~~r~ 472 (794)
++.++++++++++- .+.....+....-.. +-.++.-|++-=...++ .|. |+
T Consensus 296 L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEe----tHQ----kk-------------- 353 (593)
T KOG4807|consen 296 LEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEE----THQ----KK-------------- 353 (593)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHH----HHH----HH--------------
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003810 473 LEEALKETEKEMSLVSAEKDKALQEL-QEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTV 551 (794)
Q Consensus 473 Le~~l~E~E~~l~~a~~er~ra~~el-q~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~l 551 (794)
+++..+--+.+|+....++|++..+- -+.+.-++----.-+.+++---.+.+++.-..+.++-+++.+....+.+|.-+
T Consensus 354 iEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVL 433 (593)
T KOG4807|consen 354 IEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVL 433 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 003810 552 EESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRSLELRPADN 631 (794)
Q Consensus 552 e~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~E~e~~r~~~~~~l~eke~el~kL~~e~~~l~~~L~~r~~~~ 631 (794)
-+.|-+.|=+.-+ +.+.++.-+..+..-+.+-.. +.+...-=...|-+++..|+.-|.
T Consensus 434 SEQYSQKCLEnah---------LaqalEaerqaLRqCQrEnQE-------LnaHNQELnnRLaaEItrLRtllt------ 491 (593)
T KOG4807|consen 434 SEQYSQKCLENAH---------LAQALEAERQALRQCQRENQE-------LNAHNQELNNRLAAEITRLRTLLT------ 491 (593)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHhhHHHHHHHHHHHHhc------
Q ss_pred CCCCCCCCccccccccc-ccCCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 632 HNDKDSTGITASQKQDV-LNSIPSAAEQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFR 710 (794)
Q Consensus 632 ~~~~~~~~~~~s~~~d~-~~~~~~~~e~~~l~~a~~~a~re~El~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir 710 (794)
+|+ ++.+|-+.+..--.+---+.-++.||.=+...|..|..++--..+...--...+.-.=-++.
T Consensus 492 --------------gdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELS 557 (593)
T KOG4807|consen 492 --------------GDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELS 557 (593)
T ss_pred --------------cCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q ss_pred HHhhhccccCCchhHHHHHH
Q 003810 711 NMERSKKREGVDMTYLKNVI 730 (794)
Q Consensus 711 ~ler~~~re~~n~eYLKNV~ 730 (794)
-. +.+...++.-||.-+
T Consensus 558 ia---KakadcdIsrLKEqL 574 (593)
T KOG4807|consen 558 IA---KAKADCDISRLKEQL 574 (593)
T ss_pred HH---HHhhhccHHHHHHHH
No 350
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.50 E-value=5.4e+02 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=11.0
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 003810 192 ETRLRDVGETAERASSQCSALQQELERT 219 (794)
Q Consensus 192 ~e~leE~e~~~~~lsk~~ssLq~qL~d~ 219 (794)
...+++++..+.+-.+++..|+.+|..+
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334344444444333333
No 351
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.49 E-value=1.4e+03 Score=27.24 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhH
Q 003810 429 LMAAKQEIIHLEREFSS 445 (794)
Q Consensus 429 l~~~q~e~~~le~Ele~ 445 (794)
+.+..-++++|+.||-.
T Consensus 528 ~~a~~~E~eklE~el~~ 544 (622)
T COG5185 528 LVAQRIEIEKLEKELND 544 (622)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666777666655
No 352
>PF14282 FlxA: FlxA-like protein
Probab=21.31 E-value=5.3e+02 Score=24.14 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003810 135 DAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 135 e~~~~~l~~ql~e~q~kl~ee 155 (794)
+..|..|..|+..++.+|.+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555443
No 353
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.15 E-value=81 Score=29.82 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELE 217 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~ 217 (794)
..++..|..++.++...+..+......++..|.
T Consensus 38 ~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 38 QRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 444444444444444444444444444444443
No 354
>PRK02119 hypothetical protein; Provisional
Probab=20.84 E-value=5.6e+02 Score=22.54 Aligned_cols=7 Identities=14% Similarity=0.012 Sum_probs=2.5
Q ss_pred hhhHHHH
Q 003810 207 SQCSALQ 213 (794)
Q Consensus 207 k~~ssLq 213 (794)
+.+..|+
T Consensus 37 ~~id~L~ 43 (73)
T PRK02119 37 FVIDKMQ 43 (73)
T ss_pred HHHHHHH
Confidence 3333333
No 355
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.70 E-value=6.7e+02 Score=23.09 Aligned_cols=102 Identities=13% Similarity=0.305 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHH
Q 003810 90 SREVVDVKELRERIESLSKELQEEKETRGAAEKALEHLRVQYEEA--DAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELD 167 (794)
Q Consensus 90 ~~~~~~v~el~eq~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~--e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~ 167 (794)
|.-......|..++..+...+ +.+..--.+.+.+..++... +..|-.+-...- +....++.+..|......+.
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~----~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vf-v~~~~~ea~~~Le~~~e~le 76 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQR----QKVEAQLNENKKALEELEKLADDAEVYKLVGNVL-VKQEKEEARTELKERLETIE 76 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHH-hhccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 003810 168 SKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASS 207 (794)
Q Consensus 168 ~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk 207 (794)
..+.++ ...+..+...+.+....+..+.+
T Consensus 77 ~~i~~l-----------~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 77 LRIKRL-----------ERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhC
No 356
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.67 E-value=1.4e+03 Score=26.90 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 174 HKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCR 253 (794)
Q Consensus 174 h~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke 253 (794)
|-+.|+.+-+|++-...|.+++.+.+-.....-..-..-.-++ +--.-+...-+++.++...++|..+...|+.
T Consensus 245 ~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEi------l~k~eReasle~Enlqmr~qqleeentelRs 318 (502)
T KOG0982|consen 245 SSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREI------LIKKEREASLEKENLQMRDQQLEEENTELRS 318 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777665443332111111111110 0000111122444555555555555555554
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 254 SFQPKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 254 ~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
-..-.-.-+.+|..+.......|+.++-++-
T Consensus 319 ~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 319 LIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4433333444444444444344444444444
No 357
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.47 E-value=1.3e+03 Score=26.36 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 237 LRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 237 Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
+.+....|+-.++++....-+.++..+.|-+|+.+.
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 333444444444555554445555556666666555
No 358
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.36 E-value=4.8e+02 Score=24.43 Aligned_cols=10 Identities=30% Similarity=0.275 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 003810 185 QKEKDDLETR 194 (794)
Q Consensus 185 q~E~~~L~e~ 194 (794)
+-+...+...
T Consensus 71 ~l~l~el~G~ 80 (106)
T PF10805_consen 71 QLELAELRGE 80 (106)
T ss_pred HHHHHHHHhH
Confidence 3333333333
No 359
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.31 E-value=1.8e+03 Score=27.93 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 003810 475 EALKETEKEMSLVSAEKDKALQELQEALANHD 506 (794)
Q Consensus 475 ~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~ 506 (794)
..+..++.-+......-+++...|......++
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEELERELE 533 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555544444443
No 360
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.25 E-value=3.7e+02 Score=24.28 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003810 672 EELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNMERS 715 (794)
Q Consensus 672 ~El~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir~ler~ 715 (794)
.++-.++..+..|-..+.....+|..+...+..|...|..|-..
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777888888888888888999999999999999887543
No 361
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.24 E-value=8.2e+02 Score=23.94 Aligned_cols=64 Identities=14% Similarity=0.313 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 471 RALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMN 534 (794)
Q Consensus 471 r~Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~ 534 (794)
|.|..+..-+-.+|+.+.+.-..+-+.|.+-+..++..|++-..-...++..+-.+...+....
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555555555655555555555555555555555555444444444444444444444443
Done!