Query 003810
Match_columns 794
No_of_seqs 253 out of 318
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:49:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upt_B Golgi autoantigen, golg 99.1 3.8E-11 1.3E-15 97.8 4.4 47 719-765 3-49 (60)
2 1c1g_A Tropomyosin; contractIl 98.7 0.00033 1.1E-08 70.5 43.1 34 179-212 90-123 (284)
3 1i84_S Smooth muscle myosin he 98.3 1.2E-06 4E-11 109.6 11.6 13 433-445 1122-1134(1184)
4 1i84_S Smooth muscle myosin he 98.3 1.6E-06 5.5E-11 108.4 11.0 6 159-164 862-867 (1184)
5 3bbp_D GRIP and coiled-coil do 97.5 6.8E-05 2.3E-09 62.5 3.5 47 674-720 24-70 (71)
6 3na7_A HP0958; flagellar bioge 96.7 0.094 3.2E-06 54.6 19.7 30 243-272 94-123 (256)
7 3o0z_A RHO-associated protein 96.4 0.88 3E-05 44.6 22.6 72 295-380 89-160 (168)
8 2v71_A Nuclear distribution pr 96.3 0.77 2.6E-05 45.9 22.1 129 193-343 49-180 (189)
9 3na7_A HP0958; flagellar bioge 96.3 0.49 1.7E-05 49.2 21.7 39 181-219 92-130 (256)
10 2efr_A General control protein 96.2 0.7 2.4E-05 44.9 20.7 90 179-272 42-131 (155)
11 2v71_A Nuclear distribution pr 95.9 1.3 4.5E-05 44.2 21.4 119 99-228 22-144 (189)
12 3vkg_A Dynein heavy chain, cyt 95.8 2.2 7.5E-05 58.4 29.7 32 366-397 2076-2107(3245)
13 3o0z_A RHO-associated protein 95.8 1.6 5.5E-05 42.8 21.3 125 136-272 6-130 (168)
14 2fxo_A Myosin heavy chain, car 95.8 0.68 2.3E-05 43.4 18.2 61 195-259 64-124 (129)
15 2dfs_A Myosin-5A; myosin-V, in 95.6 0.32 1.1E-05 60.4 19.5 19 207-225 984-1002(1080)
16 2efr_A General control protein 95.2 2.4 8.3E-05 41.1 21.9 103 239-343 22-124 (155)
17 2dfs_A Myosin-5A; myosin-V, in 94.9 0.46 1.6E-05 59.0 17.6 51 138-192 923-973 (1080)
18 2fxo_A Myosin heavy chain, car 94.7 1.9 6.5E-05 40.3 17.4 80 138-225 43-122 (129)
19 3vkg_A Dynein heavy chain, cyt 94.3 8.4 0.00029 53.0 28.5 40 304-343 2064-2103(3245)
20 3ol1_A Vimentin; structural ge 92.9 3.5 0.00012 38.1 15.3 63 185-251 19-81 (119)
21 3swk_A Vimentin; cytoskeleton, 92.0 1.1 3.7E-05 39.3 10.2 78 189-270 3-80 (86)
22 2eqb_B RAB guanine nucleotide 92.0 2.7 9.2E-05 37.7 12.7 41 185-225 53-94 (97)
23 3u1c_A Tropomyosin alpha-1 cha 91.3 7.4 0.00025 34.9 15.1 83 117-214 4-86 (101)
24 3bas_A Myosin heavy chain, str 91.0 1.8 6.1E-05 38.1 10.5 74 136-224 14-87 (89)
25 3ol1_A Vimentin; structural ge 89.1 9.6 0.00033 35.1 14.3 90 153-257 19-108 (119)
26 3u59_A Tropomyosin beta chain; 88.4 13 0.00046 33.1 14.6 80 117-211 4-83 (101)
27 3u1c_A Tropomyosin alpha-1 cha 88.2 13 0.00045 33.3 14.2 33 178-210 8-40 (101)
28 3s84_A Apolipoprotein A-IV; fo 87.9 29 0.00099 36.4 27.2 22 295-316 102-123 (273)
29 3oja_B Anopheles plasmodium-re 87.9 6.1 0.00021 45.0 14.9 18 138-155 472-489 (597)
30 2v66_B Nuclear distribution pr 87.3 17 0.0006 33.2 16.2 50 178-227 41-90 (111)
31 1x79_B RAB GTPase binding effe 87.2 8.9 0.0003 35.2 12.5 77 540-621 28-104 (112)
32 2ocy_A RAB guanine nucleotide 87.0 23 0.00079 34.2 17.9 91 236-333 55-145 (154)
33 3tnu_B Keratin, type II cytosk 86.8 13 0.00044 34.5 13.9 49 501-553 23-71 (129)
34 3oja_B Anopheles plasmodium-re 86.5 4.9 0.00017 45.8 13.0 19 325-343 559-577 (597)
35 3tnu_A Keratin, type I cytoske 85.4 13 0.00043 34.8 13.0 49 501-553 25-73 (131)
36 3swk_A Vimentin; cytoskeleton, 85.1 8.9 0.0003 33.5 11.0 84 155-253 1-84 (86)
37 3s4r_A Vimentin; alpha-helix, 85.0 13 0.00046 32.8 12.2 70 179-254 23-92 (93)
38 2ocy_A RAB guanine nucleotide 85.0 29 0.00099 33.5 19.9 88 182-272 54-141 (154)
39 2a01_A Apolipoprotein A-I; fou 84.9 14 0.00048 38.0 14.3 18 243-260 129-146 (243)
40 1x79_B RAB GTPase binding effe 83.8 10 0.00034 34.9 11.1 90 94-194 6-106 (112)
41 2eqb_B RAB guanine nucleotide 83.6 23 0.00079 31.7 13.0 50 179-228 19-68 (97)
42 3u59_A Tropomyosin beta chain; 83.3 24 0.00083 31.4 14.2 34 178-211 8-41 (101)
43 2e7s_A RAB guanine nucleotide 82.8 6.8 0.00023 37.1 9.8 86 184-272 44-129 (135)
44 2e7s_A RAB guanine nucleotide 79.3 6.5 0.00022 37.2 8.3 43 183-225 71-114 (135)
45 3tnu_B Keratin, type II cytosk 73.8 53 0.0018 30.3 13.0 33 192-224 42-74 (129)
46 3bas_A Myosin heavy chain, str 73.1 47 0.0016 28.9 11.8 43 236-278 39-81 (89)
47 1ic2_A Tropomyosin alpha chain 71.9 46 0.0016 28.3 11.5 40 178-217 5-44 (81)
48 3s84_A Apolipoprotein A-IV; fo 71.5 1E+02 0.0035 32.2 29.5 16 147-162 81-96 (273)
49 2v66_B Nuclear distribution pr 70.9 64 0.0022 29.5 15.9 61 204-271 7-67 (111)
50 3tnu_A Keratin, type I cytoske 70.0 50 0.0017 30.6 11.9 18 207-224 59-76 (131)
51 2jee_A YIIU; FTSZ, septum, coi 68.6 36 0.0012 29.5 9.6 49 180-228 28-76 (81)
52 1ic2_A Tropomyosin alpha chain 67.6 53 0.0018 28.0 10.7 17 185-201 54-70 (81)
53 2a01_A Apolipoprotein A-I; fou 67.1 31 0.0011 35.3 10.8 18 295-312 146-163 (243)
54 3mq7_A Bone marrow stromal ant 65.4 76 0.0026 29.2 11.5 25 86-110 15-41 (121)
55 2jee_A YIIU; FTSZ, septum, coi 64.8 61 0.0021 28.1 10.3 31 314-344 10-40 (81)
56 3cvf_A Homer-3, homer protein 64.1 64 0.0022 27.8 10.3 50 179-228 13-62 (79)
57 2b9c_A Striated-muscle alpha t 62.2 1.1E+02 0.0038 29.1 14.2 37 133-173 49-85 (147)
58 2v4h_A NF-kappa-B essential mo 61.9 79 0.0027 28.9 10.9 76 187-270 25-100 (110)
59 3qh9_A Liprin-beta-2; coiled-c 61.3 49 0.0017 28.6 8.9 55 211-269 23-77 (81)
60 3cve_A Homer protein homolog 1 60.3 77 0.0026 26.8 9.9 53 178-230 6-58 (72)
61 2i1j_A Moesin; FERM, coiled-co 59.2 9.6 0.00033 44.1 5.8 24 131-154 330-353 (575)
62 2v4h_A NF-kappa-B essential mo 57.3 1.2E+02 0.0039 27.8 11.6 25 248-272 26-50 (110)
63 3q8t_A Beclin-1; autophagy, AT 56.9 1E+02 0.0036 27.2 13.0 28 185-212 17-44 (96)
64 4h22_A Leucine-rich repeat fli 55.5 58 0.002 29.4 8.8 48 177-224 35-82 (103)
65 1t3j_A Mitofusin 1; coiled coi 55.3 51 0.0017 29.4 8.4 57 138-195 38-94 (96)
66 3i00_A HIP-I, huntingtin-inter 53.9 83 0.0028 29.1 10.0 25 155-179 16-40 (120)
67 3oja_A Leucine-rich immune mol 52.4 2E+02 0.0069 31.6 15.0 23 263-285 452-474 (487)
68 1wt6_A Myotonin-protein kinase 51.0 1.1E+02 0.0039 26.3 9.6 45 233-277 25-69 (81)
69 3mq9_A Bone marrow stromal ant 49.1 2.8E+02 0.0095 30.3 15.4 46 177-222 395-440 (471)
70 3ghg_A Fibrinogen alpha chain; 48.4 2.5E+02 0.0084 32.1 14.4 8 310-317 156-163 (562)
71 1d7m_A Cortexillin I; coiled-c 47.8 1.5E+02 0.005 26.2 14.7 50 120-173 30-79 (101)
72 3trt_A Vimentin; cytoskeleton, 45.7 1.2E+02 0.004 25.3 9.0 41 178-218 34-74 (77)
73 4emc_A Monopolin complex subun 44.1 1E+02 0.0035 30.6 9.4 45 181-225 22-66 (190)
74 3jsv_C NF-kappa-B essential mo 43.7 1.7E+02 0.006 25.9 10.0 25 248-272 4-28 (94)
75 3a7p_A Autophagy protein 16; c 43.6 2.3E+02 0.0078 27.2 11.8 65 123-195 69-133 (152)
76 3he5_B Synzip2; heterodimeric 41.7 75 0.0026 24.2 6.2 39 677-715 8-46 (52)
77 3s4r_A Vimentin; alpha-helix, 41.6 1.8E+02 0.0062 25.5 12.2 39 185-223 55-93 (93)
78 3cvf_A Homer-3, homer protein 40.5 1.4E+02 0.0048 25.7 8.6 24 261-284 49-72 (79)
79 3hnw_A Uncharacterized protein 40.4 2.4E+02 0.0081 26.5 12.4 10 70-79 36-45 (138)
80 2no2_A HIP-I, huntingtin-inter 40.3 2.1E+02 0.0071 25.8 14.0 30 120-149 13-42 (107)
81 3mq9_A Bone marrow stromal ant 38.9 4.2E+02 0.014 28.9 15.9 10 263-272 400-409 (471)
82 3m91_A Proteasome-associated A 37.4 1.1E+02 0.0037 24.2 6.8 41 672-712 9-49 (51)
83 1ci6_A Transcription factor AT 37.3 87 0.003 25.5 6.6 42 678-733 22-63 (63)
84 3i00_A HIP-I, huntingtin-inter 37.0 2.1E+02 0.0072 26.3 9.9 46 574-623 38-83 (120)
85 4gkw_A Spindle assembly abnorm 36.3 2.8E+02 0.0094 26.1 20.5 61 303-374 98-158 (167)
86 3ghg_A Fibrinogen alpha chain; 35.8 3.3E+02 0.011 31.2 12.9 24 236-259 142-165 (562)
87 2k48_A Nucleoprotein; viral pr 34.3 2.3E+02 0.0078 25.6 9.2 19 239-257 82-100 (107)
88 3cl3_D NF-kappa-B essential mo 33.0 1.1E+02 0.0038 28.6 7.2 72 178-253 29-104 (130)
89 2lem_A Apolipoprotein A-I; lip 32.4 3.8E+02 0.013 26.5 14.0 41 236-276 77-118 (216)
90 2qyw_A Vesicle transport throu 32.2 2.3E+02 0.0078 25.1 9.1 19 517-535 45-63 (102)
91 2xdj_A Uncharacterized protein 32.2 2.5E+02 0.0084 24.2 9.6 51 102-152 7-57 (83)
92 3mq7_A Bone marrow stromal ant 31.2 3.2E+02 0.011 25.2 14.0 39 238-276 70-108 (121)
93 3uul_A Utrophin; spectrin repe 31.0 2.5E+02 0.0086 24.0 13.9 66 179-251 43-115 (118)
94 1gs9_A Apolipoprotein E, APOE4 30.6 3.1E+02 0.01 26.4 10.4 15 241-255 101-115 (165)
95 3r2p_A Apolipoprotein A-I; amp 30.4 3.8E+02 0.013 25.9 13.3 17 243-259 108-124 (185)
96 2lw1_A ABC transporter ATP-bin 29.6 2.7E+02 0.0091 23.9 9.8 26 129-154 22-47 (89)
97 2i1j_A Moesin; FERM, coiled-co 29.4 1.3E+02 0.0046 34.5 8.9 26 178-203 341-366 (575)
98 2b9c_A Striated-muscle alpha t 28.9 3.8E+02 0.013 25.4 17.1 30 243-272 84-113 (147)
99 3efg_A Protein SLYX homolog; x 28.5 1.4E+02 0.0048 25.4 6.7 53 472-528 11-63 (78)
100 1d7m_A Cortexillin I; coiled-c 27.9 3.1E+02 0.011 24.1 15.4 76 186-265 25-100 (101)
101 3mtu_E Head morphogenesis prot 27.3 2.2E+02 0.0075 24.4 7.5 47 120-166 28-74 (77)
102 3swy_A Cyclic nucleotide-gated 27.2 1.1E+02 0.0037 23.8 5.1 13 174-186 32-44 (46)
103 3mov_A Lamin-B1; LMNB1, B-type 26.8 1.2E+02 0.0043 26.7 6.3 79 180-262 13-95 (95)
104 2w83_C C-JUN-amino-terminal ki 26.6 3E+02 0.01 23.5 8.2 21 153-173 8-28 (77)
105 3lay_A Zinc resistance-associa 26.5 4E+02 0.014 26.0 10.5 49 236-284 89-137 (175)
106 1x8y_A Lamin A/C; structural p 24.9 3.1E+02 0.011 23.5 8.4 81 330-425 2-82 (86)
107 3m91_A Proteasome-associated A 24.8 2.2E+02 0.0074 22.5 6.6 38 180-217 10-47 (51)
108 1vcs_A Vesicle transport throu 24.6 2E+02 0.007 25.4 7.4 17 518-534 35-51 (102)
109 1f5n_A Interferon-induced guan 24.5 4.9E+02 0.017 30.1 12.5 15 236-250 292-306 (592)
110 2l7b_A Apolipoprotein E, APO-E 24.0 6.5E+02 0.022 26.5 15.9 23 295-317 150-172 (307)
111 4fla_A Regulation of nuclear P 23.2 4.9E+02 0.017 24.7 14.6 130 38-184 10-147 (152)
112 1gk4_A Vimentin; intermediate 23.1 3.5E+02 0.012 23.0 11.1 19 205-223 31-49 (84)
113 1f5n_A Interferon-induced guan 23.1 9E+02 0.031 27.8 16.4 32 124-155 489-520 (592)
114 2k48_A Nucleoprotein; viral pr 23.1 4.2E+02 0.014 23.9 9.6 63 468-534 35-102 (107)
115 3a7p_A Autophagy protein 16; c 22.9 5.1E+02 0.017 24.8 13.4 39 241-282 98-136 (152)
116 4gkw_A Spindle assembly abnorm 22.7 4.8E+02 0.016 24.5 20.4 24 95-118 12-35 (167)
117 3jsv_C NF-kappa-B essential mo 22.4 4.1E+02 0.014 23.5 10.4 25 139-164 54-78 (94)
118 3oja_A Leucine-rich immune mol 22.3 7.8E+02 0.027 26.8 18.2 32 124-155 355-386 (487)
119 1gk4_A Vimentin; intermediate 22.2 3.6E+02 0.012 22.9 10.4 35 357-391 27-61 (84)
120 1go4_E MAD1 (mitotic arrest de 22.2 98 0.0034 27.8 4.7 76 123-200 13-96 (100)
121 4etp_A Kinesin-like protein KA 22.1 2E+02 0.0067 31.6 8.2 24 127-150 15-38 (403)
122 2yy0_A C-MYC-binding protein; 22.0 1.3E+02 0.0046 23.7 4.9 33 121-153 18-50 (53)
123 2lw1_A ABC transporter ATP-bin 21.7 3.8E+02 0.013 22.9 8.6 17 539-555 63-79 (89)
124 3cve_A Homer protein homolog 1 21.4 3.7E+02 0.013 22.7 9.7 49 236-284 18-66 (72)
125 1gd2_E Transcription factor PA 21.1 1.8E+02 0.0062 24.3 5.8 41 669-709 26-66 (70)
126 1m1j_B Fibrinogen beta chain; 20.7 9.2E+02 0.032 27.0 17.4 29 178-206 120-148 (464)
No 1
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=99.11 E-value=3.8e-11 Score=97.76 Aligned_cols=47 Identities=23% Similarity=0.409 Sum_probs=43.4
Q ss_pred cCCchhHHHHHHHHhhhcCccccchHHHHHhhCCCHHHHHHHHHHHh
Q 003810 719 EGVDMTYLKNVILKLLETGEVEALLPVIAMLLQFSPEEMQKCQRAYL 765 (794)
Q Consensus 719 e~~n~eYLKNV~l~fl~~~e~~~llpvi~tlL~fsp~e~~~~~~a~~ 765 (794)
+++|+|||||||++||.++++.+|+.||+++|+|||++.+.+.+.-.
T Consensus 3 ~~an~EYLrNVl~~ym~g~~~~~m~kaI~avL~Fs~~e~q~il~~e~ 49 (60)
T 1upt_B 3 EPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILERED 49 (60)
T ss_dssp CCHHHHHHHHHHHHHHTTSSHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcccHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999987543
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.73 E-value=0.00033 Score=70.50 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSAL 212 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssL 212 (794)
.++..+..++..+...+......+..+...+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (284)
T 1c1g_A 90 RRIQLFEEELDRAQERLATALQKLEEAEKAADES 123 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.34 E-value=1.2e-06 Score=109.59 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhH
Q 003810 433 KQEIIHLEREFSS 445 (794)
Q Consensus 433 q~e~~~le~Ele~ 445 (794)
..++..++++|++
T Consensus 1122 e~eie~L~eeLee 1134 (1184)
T 1i84_S 1122 ESHISDLQEDLES 1134 (1184)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.28 E-value=1.6e-06 Score=108.37 Aligned_cols=6 Identities=0% Similarity=0.401 Sum_probs=2.2
Q ss_pred hhhHHh
Q 003810 159 HEDKYT 164 (794)
Q Consensus 159 l~~~~~ 164 (794)
+...+.
T Consensus 862 L~~eL~ 867 (1184)
T 1i84_S 862 KDEELQ 867 (1184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 5
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=97.46 E-value=6.8e-05 Score=62.54 Aligned_cols=47 Identities=32% Similarity=0.427 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 003810 674 LAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNMERSKKREG 720 (794)
Q Consensus 674 l~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir~ler~~~re~ 720 (794)
+...++++.||...+++.+.++.++.+|+.+||++|||++|++.|+.
T Consensus 24 L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnqeRe~ 70 (71)
T 3bbp_D 24 LSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREK 70 (71)
T ss_dssp -----CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 66778899999999999999999999999999999999999999874
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.73 E-value=0.094 Score=54.59 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 243 KLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 243 kL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
.|.++++.++.+....+.....+...++.+
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333333
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.35 E-value=0.88 Score=44.63 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHH
Q 003810 295 AELSAKHQKNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEK 374 (794)
Q Consensus 295 ~E~K~k~q~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek 374 (794)
.+...-++.++.+|..++........++...+..|++.|..++.+..++.. |+ ..++-.++.+++.
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ei-------d~-------~~eLKalQ~~~eq 154 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEI-------DL-------NYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HH-------HHHHHHHHHHHHH
Confidence 455666678899999999999999999999999999999999888887765 22 2355556666666
Q ss_pred HHHHHH
Q 003810 375 EKESWE 380 (794)
Q Consensus 375 ~~~e~k 380 (794)
+..+.+
T Consensus 155 E~~~H~ 160 (168)
T 3o0z_A 155 EVNEHK 160 (168)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 655444
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.30 E-value=0.77 Score=45.92 Aligned_cols=129 Identities=11% Similarity=0.149 Sum_probs=59.6
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 193 TRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 193 e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
..|+..+.....+...+..|..++..||.+++... ......++.|++++..|+.........+..|.+..+++
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~-------~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY-------AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444455566666777777777788888887633 35556677777777777665555555555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 273 DQMLEDMRTLLQAAEEKRQASIAELSAKHQ---KNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 273 ~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q---~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
.-. .+.+.. .+...-.++. .+..=|+..+.+ +..+...++||.+++..+.-++..+
T Consensus 122 Er~----~R~~~~-------SleD~e~kln~aiEr~alLE~El~E----Ke~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 122 ERA----KRATIM-------SLEDFEQRLNQAIERNAFLESELDE----KESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHH----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCC-----------------
T ss_pred HHH----HHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111 1234444443 222334444443 4455667777777777666555544
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.28 E-value=0.49 Score=49.18 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 003810 181 IQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERT 219 (794)
Q Consensus 181 iqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~ 219 (794)
|..|++|++.+...+..++..+..+...+..++..+..+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~ 130 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333333
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.22 E-value=0.7 Score=44.87 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPK 258 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~ 258 (794)
.+|.+|+.++..+...+-.++..-...+.....+..++..+..++.+.-.+. +..+..+.+|+..++.|...+...
T Consensus 42 ~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RA----E~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 42 GKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRA----EFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666555555555555544444444555555555555554433322 344444555555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 003810 259 EDALEALQLSLQEK 272 (794)
Q Consensus 259 e~a~~~Lq~El~~l 272 (794)
......+..+++..
T Consensus 118 Kek~~~i~~eLd~t 131 (155)
T 2efr_A 118 KLKYKAISEEMKQL 131 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555444
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.88 E-value=1.3 Score=44.24 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=66.3
Q ss_pred HHHHHHHhhhhh---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHH
Q 003810 99 LRERIESLSKEL---QEEKETRGA-AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLH 174 (794)
Q Consensus 99 l~eq~e~l~r~~---ek~k~~l~~-~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh 174 (794)
+..+++++...+ ......|++ ++.+|..+.....+...++.+|...+..+..|+... ..++...++.|
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~-------~~e~~~~~~~L- 93 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ-------YAQSYKQVSVL- 93 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-
Confidence 455666666663 333344444 455544444444444444444444444444443333 44444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhH
Q 003810 175 KRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALK 228 (794)
Q Consensus 175 ~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~ 228 (794)
...+..|...+..|...+.++|...-.+.+..=...+-|.|...+++..+-
T Consensus 94 ---q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiE 144 (189)
T 2v71_A 94 ---EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIE 144 (189)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344566667777777777777777667777666666777777777776553
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.83 E-value=2.2 Score=58.40 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003810 366 AHLKREHEKEKESWEAASQAFRKKLEIAESNC 397 (794)
Q Consensus 366 ~~l~kk~ek~~~e~k~~~~el~~eLe~aE~~~ 397 (794)
.+|-..+..++..|...+..+...+...-.+|
T Consensus 2076 ~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2076 IALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence 34555666777888888888887776555444
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.81 E-value=1.6 Score=42.80 Aligned_cols=125 Identities=19% Similarity=0.262 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Q 003810 136 AKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQE 215 (794)
Q Consensus 136 ~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~q 215 (794)
.++-.|+.||.|++.+|.-+ .+.-..+....+.+ .-.+..+..-+.+|...+.-++.....+.+.+..|+++
T Consensus 6 eKi~~LekQL~E~n~kLk~E----sE~~~rlkK~~tEl----~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTE----SDTAVRLRKSHTEM----SKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp ----CTHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777 33333222233333 22233334444444444444455555555556666666
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 216 LERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 216 L~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
|..=|.-..-.+. .-..++..+..|..+++.++.++.........|+.-+..+
T Consensus 78 L~qEr~~r~q~se----~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 78 LEAERRDRGHDSE----MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433332121 2246677777777777777777777776655555555544
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.81 E-value=0.68 Score=43.41 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=32.9
Q ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 003810 195 LRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKE 259 (794)
Q Consensus 195 leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e 259 (794)
+.+.+.....+......|...|.++...+++.-. ....|....++|..++..|+..++..+
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee----~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE----MNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554333 224556666666666666666555443
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.61 E-value=0.32 Score=60.36 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 003810 207 SQCSALQQELERTRQQAND 225 (794)
Q Consensus 207 k~~ssLq~qL~d~r~qleE 225 (794)
..+.+|+.++..++..++.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 16
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.21 E-value=2.4 Score=41.07 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 239 SANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADAVSD 318 (794)
Q Consensus 239 ~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~~~~ 318 (794)
.+.+ +..+++...++++..+..+..|..++..+...+-.+.-.-..+. .+-....+-.+.+...+..++.++..+...
T Consensus 22 EvaR-~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekas-qrEd~yEeqIk~L~~kLKEAE~RAE~AERs 99 (155)
T 2efr_A 22 EVAR-LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYS-QKEDKYEEEIKVLSDKLKEAETRAEFAERS 99 (155)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 89999999999999999999999998887544444333333333 222233444444455666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 319 RSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 319 ~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
+.++++++.+|-+.|..-...++.+
T Consensus 100 v~kLEk~id~lEd~L~~~Kek~~~i 124 (155)
T 2efr_A 100 VTKLEKSIDDLEDELYAQKLKYKAI 124 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554444444
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.88 E-value=0.46 Score=58.99 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 138 AQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLE 192 (794)
Q Consensus 138 ~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~ 192 (794)
...|+.++.+++.+++++ +....++..++..+...+.+.+..|+.+++++.
T Consensus 923 ~~~LE~kl~eLq~rL~~~----e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le 973 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQ----NKEYKSLLEKMNNLEITYSTETEKLRSDVERLR 973 (1080)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456777777777777665 444444544544443334444444444443333
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.68 E-value=1.9 Score=40.32 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 003810 138 AQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELE 217 (794)
Q Consensus 138 ~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~ 217 (794)
...|......++..|..+ ...+.+....+.+| ..+-.+|+..+.++..++++.+.....+....-.++.++.
T Consensus 43 ~~~l~~Ek~~L~~qL~~E----~~~l~e~EE~~~~L----~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~ 114 (129)
T 2fxo_A 43 MVSLLQEKNDLQLQVQAE----QDNLADAEERCDQL----IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECS 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555 55666666666666 3444467788888888888888888888888888888888
Q ss_pred HHHHHHHH
Q 003810 218 RTRQQAND 225 (794)
Q Consensus 218 d~r~qleE 225 (794)
+++.++++
T Consensus 115 ~Lk~~led 122 (129)
T 2fxo_A 115 ELKRDIDD 122 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888876
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.33 E-value=8.4 Score=52.96 Aligned_cols=40 Identities=3% Similarity=0.045 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003810 304 NLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 304 e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L 343 (794)
+++..+.++.-+..-...|..++.|=.+.+..++...++|
T Consensus 2064 e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2064 ESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 3333333333333333333344444555555555555555
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.87 E-value=3.5 Score=38.13 Aligned_cols=63 Identities=13% Similarity=0.358 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEEL 251 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeL 251 (794)
+.++.+|..++.........+.-++..++..+.+.|.+++++.. .|..++..+..|..++|.+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~----~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML----QREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHhhhcccHH
Confidence 56777788888887777888888888888888888888887665 4455555444444444443
No 21
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.05 E-value=1.1 Score=39.33 Aligned_cols=78 Identities=14% Similarity=0.299 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 003810 189 DDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLS 268 (794)
Q Consensus 189 ~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~E 268 (794)
.+|..++..+.....++.-++..++..+.++|.+|+++.. .|..++.-+..|..++|.+--.--..+..+..|+.+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~----~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML----QREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556555666666677777778888888888888776 566776666666666665554444444444444444
Q ss_pred HH
Q 003810 269 LQ 270 (794)
Q Consensus 269 l~ 270 (794)
+.
T Consensus 79 l~ 80 (86)
T 3swk_A 79 IA 80 (86)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.03 E-value=2.7 Score=37.69 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=23.4
Q ss_pred HHHHHHHHHH-HHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETR-LRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 185 q~E~~~L~e~-leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
+.|+++|+.. |++.+.-++...+....+.-....++.++.+
T Consensus 53 e~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 53 NKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777644 4556666666655555555544544444443
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.28 E-value=7.4 Score=34.90 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 117 RGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLR 196 (794)
Q Consensus 117 l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~le 196 (794)
|.++..-+..|+..+-++.-++..++.+++.+..+...- ...+..|..++. .++.+++.+...|.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~----E~Ei~sL~kk~~-----------~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQL----EDDIVQLEKQLR-----------VTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 445555566666666666666666666666555544443 333443333333 33666665555555
Q ss_pred HHhHHHHHHHhhhHHHHH
Q 003810 197 DVGETAERASSQCSALQQ 214 (794)
Q Consensus 197 E~e~~~~~lsk~~ssLq~ 214 (794)
+...++....+..+...+
T Consensus 69 ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 69 KSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 554444444444443333
No 24
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.95 E-value=1.8 Score=38.07 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Q 003810 136 AKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQE 215 (794)
Q Consensus 136 ~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~q 215 (794)
..+..+...+..+...+... ...+.++..+..+| ..++++|..++.+.+.....+......|..+
T Consensus 14 eEm~~~eeel~~lke~l~k~----e~~rkele~~~~~l-----------~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~ 78 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKT----ERIKKELEEQNVTL-----------LEQKNDLFGSMKQLEDKVEELLSKNYHLENE 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433 34444444444444 7777777777777777777777777777777
Q ss_pred HHHHHHHHH
Q 003810 216 LERTRQQAN 224 (794)
Q Consensus 216 L~d~r~qle 224 (794)
|.++...++
T Consensus 79 l~el~~rl~ 87 (89)
T 3bas_A 79 VARLKKLVG 87 (89)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 777665553
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.08 E-value=9.6 Score=35.13 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=57.5
Q ss_pred HhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHH
Q 003810 153 GQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDI 232 (794)
Q Consensus 153 ~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~ 232 (794)
...|..|.+++..+....+++ .-.+.+++...+++...++++- ....++..++.-+|+-+++.+-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l----~leldn~~~~~edfk~KyE~E~-------~~r~~~E~di~~lrK~lD~~~l---- 83 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARV----EVERDNLAEDIMRLREKLQEEM-------LQREEAENTLQSFRQDVDNASL---- 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHhhhcccHHHH----
Confidence 345555666666555555555 2334444555555555555433 2345567778888888887665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcch
Q 003810 233 ERQQLRSANNKLRDNIEELCRSFQP 257 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~lee 257 (794)
.|-.|+..+..|.++++-|+.-.++
T Consensus 84 ~r~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 84 ARLDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888888876654
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.37 E-value=13 Score=33.07 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 117 RGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLR 196 (794)
Q Consensus 117 l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~le 196 (794)
|.+...-+..|+..+.++.-++..++.+++.+......- ...+..+..+ ++.++.+.+.+...|.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~----E~ei~sL~kK-----------iq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQL----EEEQQGLQKK-----------LKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 444555566677777777777777777777655554443 3333333333 3333555555555555
Q ss_pred HHhHHHHHHHhhhHH
Q 003810 197 DVGETAERASSQCSA 211 (794)
Q Consensus 197 E~e~~~~~lsk~~ss 211 (794)
+...++....+....
T Consensus 69 ~a~~kLe~~ek~~~~ 83 (101)
T 3u59_A 69 EAQEKLEQAEKKATD 83 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 544444444433333
No 27
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.21 E-value=13 Score=33.26 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhH
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCS 210 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~s 210 (794)
|-+++.|..++++.....+..+..+..+.....
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~ 40 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSK 40 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666555555555544444433333
No 28
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=87.90 E-value=29 Score=36.37 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003810 295 AELSAKHQKNLESLEAQLADAV 316 (794)
Q Consensus 295 ~E~K~k~q~e~E~LEa~~~E~~ 316 (794)
.+++.+....++.+...+.-+.
T Consensus 102 eelr~kl~~~veelk~~L~Py~ 123 (273)
T 3s84_A 102 DELKAKIDQNVEELKGRLTPYA 123 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhHhHH
Confidence 4556666666666665555443
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.87 E-value=6.1 Score=44.99 Aligned_cols=18 Identities=6% Similarity=0.053 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003810 138 AQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 138 ~~~l~~ql~e~q~kl~ee 155 (794)
....+..++..+.++++.
T Consensus 472 ~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 472 QIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333334444344444443
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.33 E-value=17 Score=33.24 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDAL 227 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~ 227 (794)
+..+..|...++.+...+.++|.+.-.+.+..=...+-|.|+-.+|..++
T Consensus 41 q~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 41 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555666666666666666655666655555566666666666544
No 31
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=87.22 E-value=8.9 Score=35.23 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 540 EKEAWEKNLQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKN 619 (794)
Q Consensus 540 ~kk~~e~~L~~le~~~r~~~e~le~~~e~aa~~e~~kel~elq~~~~~L~~E~e~~r~~~~~~l~eke~el~kL~~e~~~ 619 (794)
.+..++..+....+.|+.....|..+...+ .+.|.+++..+..++..+..+=..+-.-.+..-.+|..|..+|..
T Consensus 28 ~r~~Le~~w~~k~E~~k~qV~~L~~~~q~s-----E~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 28 DKQELEDFIKQSSEDSSHQISALVLRAQAS-----EILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444445455555555666666666666655 777788888888888777776666666667777777888888777
Q ss_pred Hh
Q 003810 620 LH 621 (794)
Q Consensus 620 l~ 621 (794)
|.
T Consensus 103 L~ 104 (112)
T 1x79_B 103 LQ 104 (112)
T ss_dssp --
T ss_pred hh
Confidence 65
No 32
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.97 E-value=23 Score=34.24 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQAAEEKRQASIAELSAKHQKNLESLEAQLADA 315 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq~~~Ekkq~~L~E~K~k~q~e~E~LEa~~~E~ 315 (794)
........|..++..-+..-...+..+.++.++++++++.|=+=.+.+.... --.+.......+.|+.++.+.
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a-------r~~~~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA-------RKEKYAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666677778888888888776644233333211 011222346777788888888
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 003810 316 VSDRSKATETISSLQVLV 333 (794)
Q Consensus 316 ~~~~~kl~~~~~rLqeeL 333 (794)
......++..+..|..-+
T Consensus 128 ~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 128 DTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 775555555555544433
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.84 E-value=13 Score=34.54 Aligned_cols=49 Identities=12% Similarity=0.338 Sum_probs=29.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003810 501 ALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEE 553 (794)
Q Consensus 501 ~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~ 553 (794)
....+...+.....++.+++..|..|+.+++++.+ .+..++..|.+++.
T Consensus 23 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~----~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 23 TAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKK----QCANLQNAIADAEQ 71 (129)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHH
Confidence 33334444555567778888889999998888875 66677777777664
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.47 E-value=4.9 Score=45.82 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 003810 325 TISSLQVLVAEKETTIAEM 343 (794)
Q Consensus 325 ~~~rLqeeLeelerEnK~L 343 (794)
.+.++++++..++.++|.|
T Consensus 559 ~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.40 E-value=13 Score=34.76 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=25.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003810 501 ALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKLQVEKEAWEKNLQTVEE 553 (794)
Q Consensus 501 ~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~~~~~~~kk~~e~~L~~le~ 553 (794)
....+...+.....++.+++..|..|+.+++++.+ .+..++..|.+++.
T Consensus 25 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~----~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 25 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLS----MKASLENSLEETKG 73 (131)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHH
Confidence 33334444555567777888888889888888875 56667777777664
No 36
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.05 E-value=8.9 Score=33.46 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=54.6
Q ss_pred hhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHH
Q 003810 155 EIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIER 234 (794)
Q Consensus 155 e~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~r 234 (794)
+|.+|.+++..+....+++ ..+++++...++..-.+...-...-.++..++.-+|+-+++.+- .|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l-----------~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l----~r 65 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARV-----------EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL----AR 65 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH----HH
T ss_pred CHHHHHHHHHHHHhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HH
Confidence 3667777887777777777 44444444444444444443334445566666777777777665 67
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003810 235 QQLRSANNKLRDNIEELCR 253 (794)
Q Consensus 235 e~Le~~~rkL~~e~eeLke 253 (794)
-.|+..+..|.+++.-|+.
T Consensus 66 ~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 66 LDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7889989889888887764
No 37
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.00 E-value=13 Score=32.80 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRS 254 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~ 254 (794)
++|+.|+..+..|...+...... ..++--+-..+++.++|.+++..+. .+..+...+..|..+++.++.+
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~--~~~~~~~~ye~~i~~Lr~~i~~~~~----ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRRQVDQLTN----DKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 45555577777776666554432 1233334456666666666665444 4455555556666666666554
No 38
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.96 E-value=29 Score=33.54 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q 003810 182 QEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDA 261 (794)
Q Consensus 182 qeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a 261 (794)
..+..++..|...+.+.......+.+....++++|.++-..|=++...| |.. -....-.+....+.|+.++.+....
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M--Va~-ar~~~~~~e~r~~~L~~ql~e~~~~ 130 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM--VAD-ARKEKYAIEILNKRLTEQLREKDTL 130 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777888888888888887765554444333 222 2333334455555556666555555
Q ss_pred HHHHHHHHHHH
Q 003810 262 LEALQLSLQEK 272 (794)
Q Consensus 262 ~~~Lq~El~~l 272 (794)
+..|+.++..+
T Consensus 131 l~~lq~ql~~L 141 (154)
T 2ocy_A 131 LDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 39
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=84.92 E-value=14 Score=37.95 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhcchHHH
Q 003810 243 KLRDNIEELCRSFQPKED 260 (794)
Q Consensus 243 kL~~e~eeLke~lee~e~ 260 (794)
++....++|+.+|..--+
T Consensus 129 ~~~~~~eel~~~L~p~~e 146 (243)
T 2a01_A 129 GARQKLHELQEKLSPLGE 146 (243)
T ss_dssp HHHHHHHHHCCSCCSSTH
T ss_pred HHHhhHHHHHHHHHhHHH
Confidence 334455555555555444
No 40
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=83.83 E-value=10 Score=34.87 Aligned_cols=90 Identities=14% Similarity=0.288 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 003810 94 VDVKELRERIESLSKELQEEKETRGAAEK-----------ALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDK 162 (794)
Q Consensus 94 ~~v~el~eq~e~l~r~~ek~k~~l~~~~~-----------~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~ 162 (794)
+.++-|...+.+|++.+.|.......++. .+-.|+..+..++..++.|..-+..++..+.+.+-.|...
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776666555555433 3334444444444444444444444444444443333333
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 163 YTELDSKFTRLHKRAKQRIQEVQKEKDDLETR 194 (794)
Q Consensus 163 ~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~ 194 (794)
+ .+.+.++-.|+.|++.|...
T Consensus 86 R-----------e~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 86 R-----------EQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp H-----------HHHHTC--------------
T ss_pred H-----------HHHHHHHHHHHhhccchhhh
Confidence 3 33344444557777777654
No 41
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.61 E-value=23 Score=31.68 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALK 228 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~ 228 (794)
.++..+..++..|...|.+.......+.+....++++|.++-..|=++..
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN 68 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566777777777777777777888888888888776655544333
No 42
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.34 E-value=24 Score=31.37 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHH
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSA 211 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ss 211 (794)
|-+++.|..++++.....+..+..+..+......
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~ 41 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQ 41 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444444333333
No 43
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.76 E-value=6.8 Score=37.11 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 003810 184 VQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALE 263 (794)
Q Consensus 184 Lq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~ 263 (794)
+..++..|...+.+.......+......++++|.++-..+=++...| |. .-....-.+....+.|+.++.+....+.
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~M--Va-~ar~~~~~~e~r~~~L~~ql~e~e~ll~ 120 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNL--VA-DARMEKYAIEILNKRLTEQLREKDMLLD 120 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH--HH-HTTHHHHHHHHHHHHHHHTTTHHHHCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777778888888888887765554434333 22 2233444556666677777777766666
Q ss_pred HHHHHHHHH
Q 003810 264 ALQLSLQEK 272 (794)
Q Consensus 264 ~Lq~El~~l 272 (794)
.++.++.++
T Consensus 121 ~lq~QL~~L 129 (135)
T 2e7s_A 121 TLTLQLKNL 129 (135)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 666666655
No 44
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.26 E-value=6.5 Score=37.22 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHH-HHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 183 EVQKEKDDLETR-LRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 183 eLq~E~~~L~e~-leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
.++.|+++|... |++++.-++...+....+.--...++.++.+
T Consensus 71 ~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 71 KLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 338888888854 5667777777766666666555555555554
No 45
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.77 E-value=53 Score=30.35 Aligned_cols=33 Identities=15% Similarity=0.382 Sum_probs=13.8
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003810 192 ETRLRDVGETAERASSQCSALQQELERTRQQAN 224 (794)
Q Consensus 192 ~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qle 224 (794)
...+..++..+..+.....+|...|.++...+.
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444544444444
No 46
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.10 E-value=47 Score=28.93 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLED 278 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~ 278 (794)
.|+.....|..+++.|..++.+.++.+.+|.....++...+.+
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444333333
No 47
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.86 E-value=46 Score=28.35 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELE 217 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~ 217 (794)
|-+++.|..+++.....++..+..+.........+..++.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~ 44 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELV 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4455556666666666666655555555544444444433
No 48
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=71.53 E-value=1e+02 Score=32.18 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=6.4
Q ss_pred HHHHHHHhhhhhhhhH
Q 003810 147 EAQQKLGQEIKGHEDK 162 (794)
Q Consensus 147 e~q~kl~ee~~~l~~~ 162 (794)
++..++...+++|...
T Consensus 81 el~~~l~~~~eeLr~~ 96 (273)
T 3s84_A 81 RMERVLRENADSLQAS 96 (273)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3344444443333333
No 49
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.85 E-value=64 Score=29.53 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=30.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 003810 204 RASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQE 271 (794)
Q Consensus 204 ~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~ 271 (794)
.|......|..++..||.++..... ........|++++..|+..-+.....+..|.+..++
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~-------e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYA-------QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 4455555566666666666665222 334444555555555554444444444444443333
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.96 E-value=50 Score=30.63 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 003810 207 SQCSALQQELERTRQQAN 224 (794)
Q Consensus 207 k~~ssLq~qL~d~r~qle 224 (794)
....+|...|.++...+.
T Consensus 59 ~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 59 SMKASLENSLEETKGRYC 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.64 E-value=36 Score=29.49 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhH
Q 003810 180 RIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALK 228 (794)
Q Consensus 180 riqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~ 228 (794)
.|.+|..++..|....+++......+......|..+...|+.++..-.+
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555666666666666666666655443
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.58 E-value=53 Score=27.95 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhHH
Q 003810 185 QKEKDDLETRLRDVGET 201 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~ 201 (794)
+.+++.+.+.+.....+
T Consensus 54 E~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 54 EDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444333333
No 53
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=67.07 E-value=31 Score=35.28 Aligned_cols=18 Identities=17% Similarity=0.481 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003810 295 AELSAKHQKNLESLEAQL 312 (794)
Q Consensus 295 ~E~K~k~q~e~E~LEa~~ 312 (794)
.+++.+....++++...+
T Consensus 146 eelr~kl~~~veelk~~l 163 (243)
T 2a01_A 146 EEMRDRARAHVDALRTHL 163 (243)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 54
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=65.43 E-value=76 Score=29.22 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=13.2
Q ss_pred cch-hhhhhhhHHHH-HHHHHHhhhhh
Q 003810 86 DGQ-ESREVVDVKEL-RERIESLSKEL 110 (794)
Q Consensus 86 ~~~-~~~~~~~v~el-~eq~e~l~r~~ 110 (794)
||+ .++|-.-|.+| ..|+-+.+..+
T Consensus 15 dGLrAq~ECrN~T~lLq~qLTqAQe~l 41 (121)
T 3mq7_A 15 DGLRAVMEARNVTHLLQQELTEAQKGF 41 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344 34455555554 56666666553
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.76 E-value=61 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=23.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003810 314 DAVSDRSKATETISSLQVLVAEKETTIAEME 344 (794)
Q Consensus 314 E~~~~~~kl~~~~~rLqeeLeelerEnK~L~ 344 (794)
.+..++..+-.+|.-|+.+|++++.+|.+|.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556688889999999999998884
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=64.05 E-value=64 Score=27.81 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALK 228 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~ 228 (794)
+|++.++..+..|..++..++..+.........+..+|..+-..++-.+-
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~ 62 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLF 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444455555555555555555554444444444444444444444443
No 57
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=62.24 E-value=1.1e+02 Score=29.14 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH
Q 003810 133 EADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 133 ~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l 173 (794)
..+-++..|+.+|+++..-..+. .++|.+..-++.-+
T Consensus 49 ~deEr~~~lE~qLkeak~~aeea----drKyeE~~RKl~~~ 85 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIAEDA----DRKYEEVARKLVII 85 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHH
Confidence 44556667777777777666666 66666666555555
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.91 E-value=79 Score=28.85 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 003810 187 EKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQ 266 (794)
Q Consensus 187 E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq 266 (794)
+++.|..+|...++.+......+..+..++...+.-++. + ..|...+.=...++..=+..-+..++.+.+|+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~----I----~vLkaQv~IY~~DF~aERadREkl~~eKe~L~ 96 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET----V----PVLKAQADIYKADFQAERHAREKLVEKKEYLQ 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHccchhhHHHHHhHHHHHH
Confidence 456666666666666666666666666655553332211 1 34444444444444443333333333333333
Q ss_pred HHHH
Q 003810 267 LSLQ 270 (794)
Q Consensus 267 ~El~ 270 (794)
.++.
T Consensus 97 ~ql~ 100 (110)
T 2v4h_A 97 EQLE 100 (110)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 59
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.33 E-value=49 Score=28.61 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 003810 211 ALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSL 269 (794)
Q Consensus 211 sLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El 269 (794)
.|=+++.++|-+..+ |+.+|.+.+..++.-.+++..|+.+|+.....+.+|+.++
T Consensus 23 ~L~qEi~~Lr~kv~e----lEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEE----LENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555555544 4445566666666666666677777776666666666554
No 60
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=60.26 E-value=77 Score=26.84 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhh
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAM 230 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~ 230 (794)
-+|++.++.++..|..++..++..+.........+..+|..+-..++-.+-.|
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35667777777777777777777777666666666666666666666555544
No 61
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.24 E-value=9.6 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 131 YEEADAKAQEFSAKLAEAQQKLGQ 154 (794)
Q Consensus 131 ~~~~e~~~~~l~~ql~e~q~kl~e 154 (794)
+.++++....|+.+|..++..+..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~ 353 (575)
T 2i1j_A 330 RERAEKKQQEYQDRLRQMQEEMER 353 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 62
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.28 E-value=1.2e+02 Score=27.78 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=11.8
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 248 IEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 248 ~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
++.|+.+|..+++++..-+.++.++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idel 50 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKL 50 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444444444444
No 63
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.93 E-value=1e+02 Score=27.17 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSAL 212 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssL 212 (794)
..+-..|...|.+++.....+...+..+
T Consensus 17 ~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 17 ALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333344444444443333333333333
No 64
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=55.46 E-value=58 Score=29.39 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAN 224 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qle 224 (794)
+|+++.+++.....+.+.+.+.......+.+....|+-++..++.++.
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444445555555555555555555544
No 65
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.30 E-value=51 Score=29.43 Aligned_cols=57 Identities=12% Similarity=0.241 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 138 AQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRL 195 (794)
Q Consensus 138 ~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~l 195 (794)
..+|..+.-++...|..+|+.|..+..-++.-..++ +.++.+---|..|++.....|
T Consensus 38 farLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~a-K~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 38 FARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNS-KLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHh
Confidence 346777777777778888777777777666555555 345555556666666655443
No 66
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=53.85 E-value=83 Score=29.06 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=11.4
Q ss_pred hhhhhhhHHhhHHHHHHHHHHHHHH
Q 003810 155 EIKGHEDKYTELDSKFTRLHKRAKQ 179 (794)
Q Consensus 155 e~~~l~~~~~el~~~~~~lh~~~kq 179 (794)
.|+.|.+....+...+..++.++..
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~ 40 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQR 40 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444444433333
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.41 E-value=2e+02 Score=31.62 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003810 263 EALQLSLQEKDQMLEDMRTLLQA 285 (794)
Q Consensus 263 ~~Lq~El~~l~~~L~~~r~~lq~ 285 (794)
.++..++.++..++.+....++.
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 452 ARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHhcccHHHH
Confidence 33333333333334444444443
No 68
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=50.97 E-value=1.1e+02 Score=26.34 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 003810 233 ERQQLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLE 277 (794)
Q Consensus 233 ~re~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~ 277 (794)
.|+.+.+.+++.....-.+..+|.+.+.....|..++..+...+.
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555533333
No 69
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.14 E-value=2.8e+02 Score=30.31 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Q 003810 177 AKQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQ 222 (794)
Q Consensus 177 ~kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~q 222 (794)
++...+-||..++.++..|-.++...+...+-+-+|+.-|..-..+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 3344444566777777777776776666666666666655544444
No 70
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.41 E-value=2.5e+02 Score=32.13 Aligned_cols=8 Identities=0% Similarity=0.098 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 003810 310 AQLADAVS 317 (794)
Q Consensus 310 a~~~E~~~ 317 (794)
.+++.+..
T Consensus 156 iqirsCKg 163 (562)
T 3ghg_A 156 IKIRSCRG 163 (562)
T ss_dssp HHHHHGGG
T ss_pred HHHHhccc
Confidence 34445544
No 71
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=47.82 E-value=1.5e+02 Score=26.16 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~l 173 (794)
+...|..+....++-++++..+++++.++=..++.+ .-.+.++.+++.+-
T Consensus 30 L~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~E----klAkldLE~RLsKt 79 (101)
T 1d7m_A 30 LNSLLASLESEGAEREKRLRELEAKLDETLKNLELE----KLARMELEARLAKT 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHhhh
Confidence 344455566666666777766666666555555555 44445555555555
No 72
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=45.68 E-value=1.2e+02 Score=25.26 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELER 218 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d 218 (794)
+.++.+|+.....-...+......+..+.+.+.+|+.+|+-
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444455555555555555543
No 73
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.08 E-value=1e+02 Score=30.61 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003810 181 IQEVQKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQAND 225 (794)
Q Consensus 181 iqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleE 225 (794)
|..|+.|+..|..+++.....+..+.+++.++..+......++..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 455599999999999988888888888888888887655555543
No 74
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=43.67 E-value=1.7e+02 Score=25.90 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=13.7
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 248 IEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 248 ~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
++.|..+|..+++++..-+..++++
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~l 28 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKL 28 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455555656665555555555555
No 75
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=43.60 E-value=2.3e+02 Score=27.24 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 123 ALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEVQKEKDDLETRL 195 (794)
Q Consensus 123 ~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeLq~E~~~L~e~l 195 (794)
.+..|+..+...+.+|+.+..-+.+-..-++.- .+++.-+.-.++-+ .++++.|+.|++.|-.++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l----~DEl~aLqlq~n~l----E~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERL----NAALISGTIENNVL----QQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 455555566666666666665555333222222 33343333333333 244555577777776554
No 76
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.70 E-value=75 Score=24.23 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003810 677 SQRHILALQEELEELERENRLHSQQEAMLKEEFRNMERS 715 (794)
Q Consensus 677 ~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir~ler~ 715 (794)
++++|..|...+-.+++....+..-+..|.++|.+++..
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888899999999988754
No 77
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.62 E-value=1.8e+02 Score=25.47 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH
Q 003810 185 QKEKDDLETRLRDVGETAERASSQCSALQQELERTRQQA 223 (794)
Q Consensus 185 q~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~ql 223 (794)
+.++.+|..++.........+.-++..++.++.++|.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 778888888888888888888888888888888887653
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.51 E-value=1.4e+02 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 261 ALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 261 a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
.+.++...++-.-.+|.+++..+.
T Consensus 49 Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 49 EVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444344444444444
No 79
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.39 E-value=2.4e+02 Score=26.49 Aligned_cols=10 Identities=10% Similarity=0.567 Sum_probs=4.7
Q ss_pred HHHHhhhhcc
Q 003810 70 FLKSQFEGLN 79 (794)
Q Consensus 70 ~~~~~~~~~~ 79 (794)
||-.++..+.
T Consensus 36 ~vd~km~ei~ 45 (138)
T 3hnw_A 36 YINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4444554444
No 80
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=40.31 E-value=2.1e+02 Score=25.80 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQ 149 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q 149 (794)
....|...+.+..+.+..++.|+.++.+++
T Consensus 13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 13 VTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777888888888887665
No 81
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.86 E-value=4.2e+02 Score=28.88 Aligned_cols=10 Identities=40% Similarity=0.391 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 003810 263 EALQLSLQEK 272 (794)
Q Consensus 263 ~~Lq~El~~l 272 (794)
.-||+.|++.
T Consensus 400 ~~~~~~~~~~ 409 (471)
T 3mq9_A 400 HLLQQELTEA 409 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 82
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.41 E-value=1.1e+02 Score=24.22 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 672 EELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNM 712 (794)
Q Consensus 672 ~El~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir~l 712 (794)
..+..++.++..|...|..|...+..-.+++..|+++|.++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778888888888899989999999999999999876
No 83
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.33 E-value=87 Score=25.50 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhHHHHHHHHh
Q 003810 678 QRHILALQEELEELERENRLHSQQEAMLKEEFRNMERSKKREGVDMTYLKNVILKL 733 (794)
Q Consensus 678 ~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~eir~ler~~~re~~n~eYLKNV~l~f 733 (794)
..++..|+....++...+..+..++..|+.+ +.|||++|..|
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E--------------~~~Lk~ll~e~ 63 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKE--------------IQYLKDLIEEV 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhC
No 84
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.01 E-value=2.1e+02 Score=26.34 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003810 574 VQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHRS 623 (794)
Q Consensus 574 ~~kel~elq~~~~~L~~E~e~~r~~~~~~l~eke~el~kL~~e~~~l~~~ 623 (794)
.+.-+..|+.+|..|+.+++.++......+.+.+ .|+.++..++..
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e----~Lr~e~~~l~~~ 83 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCE----FLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3566678888888888888888877666665544 566666666543
No 85
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=36.30 E-value=2.8e+02 Score=26.06 Aligned_cols=61 Identities=28% Similarity=0.274 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHH
Q 003810 303 KNLESLEAQLADAVSDRSKATETISSLQVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEK 374 (794)
Q Consensus 303 ~e~E~LEa~~~E~~~~~~kl~~~~~rLqeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek 374 (794)
..+-.|++.+.++-+-+..+..++.-|.-+++. --|.++ ..+-+++++.-+.+.++.++-.
T Consensus 98 RKLrELEADLKEKDsMVe~LT~TiG~LrKELEd-----EklK~~------E~MdSFE~LkvENE~vkerl~m 158 (167)
T 4gkw_A 98 RKLGELEADLKEKDSMVESLTETIGILRKELEN-----EKLKAA------ENMDSFEKLSMENENLKEKIAH 158 (167)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHH------HHHHHHHHHhhhhHhHHHHHHH
Confidence 556678888888888888888999888888871 112111 2344666666666666655543
No 86
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.84 E-value=3.3e+02 Score=31.15 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKE 259 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e 259 (794)
.+...+++|+-+++--.+......
T Consensus 142 dq~~kIQRLEvDIdiqirsCKgsC 165 (562)
T 3ghg_A 142 AQLVDMKRLEVDIDIKIRSCRGSC 165 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTB
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 444556667777766555443333
No 87
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.33 E-value=2.3e+02 Score=25.61 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhcch
Q 003810 239 SANNKLRDNIEELCRSFQP 257 (794)
Q Consensus 239 ~~~rkL~~e~eeLke~lee 257 (794)
.++..|+..+.+|+.++..
T Consensus 82 ~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 88
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=32.96 E-value=1.1e+02 Score=28.56 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 178 KQRIQEVQKEKDDLETRLRD----VGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCR 253 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE----~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke 253 (794)
.+|++.+...+..+...+++ ..-.+..+.=+..++.+.|.-=|....++-+.+ -.|..+-.+|=.++|+.-.
T Consensus 29 eek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkL----AqLQ~AY~~LfqeYd~~lK 104 (130)
T 3cl3_D 29 EGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKL----AQLQVAYHQLFQEYDNHIK 104 (130)
T ss_dssp ----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 122334555666667777666666666666655 4777777777777776433
No 89
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=32.37 E-value=3.8e+02 Score=26.55 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDAL-EALQLSLQEKDQML 276 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~-~~Lq~El~~l~~~L 276 (794)
..+.....|..++++++.++..--..+ ..+.+.++++...|
T Consensus 77 ~~~~lr~~l~kd~ee~r~~l~py~~el~~~~~~~~e~lr~~L 118 (216)
T 2lem_A 77 ETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYRQKA 118 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 344556667777777777777666544 44555555554333
No 90
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=32.21 E-value=2.3e+02 Score=25.10 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 003810 517 NNANQQIKSIEIKLDSMNT 535 (794)
Q Consensus 517 ee~r~qir~lE~~l~~~~~ 535 (794)
++-+..|+.++..++.+..
T Consensus 45 e~rk~~i~~ie~~ldEA~e 63 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANE 63 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666653
No 91
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.16 E-value=2.5e+02 Score=24.24 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=23.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 102 RIESLSKELQEEKETRGAAEKALEHLRVQYEEADAKAQEFSAKLAEAQQKL 152 (794)
Q Consensus 102 q~e~l~r~~ek~k~~l~~~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl 152 (794)
++..|.+.+.-..+.+-.+...|..|+.++...-..++.+.-++..++.+.
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444433222233333555555555555555555555555555444433
No 92
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.20 E-value=3.2e+02 Score=25.19 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 003810 238 RSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQML 276 (794)
Q Consensus 238 e~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L 276 (794)
...+..|+.++..|...|......+++|.++...+.+.+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 344666666666666666666666666666666554433
No 93
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=31.04 E-value=2.5e+02 Score=24.01 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHh-------hhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 003810 179 QRIQEVQKEKDDLETRLRDVGETAERASS-------QCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEEL 251 (794)
Q Consensus 179 qriqeLq~E~~~L~e~leE~e~~~~~lsk-------~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeL 251 (794)
.+++.|+.++......+..+......+-. ....++..|.++..+++. .........+.|...+..+
T Consensus 43 ~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~-------L~~~~~~R~~~L~~aL~~~ 115 (118)
T 3uul_A 43 ATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEA-------LRVESMERQSRLHDALMEL 115 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888887776665533 233455566666666655 2234444555555444443
No 94
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=30.58 E-value=3.1e+02 Score=26.41 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhc
Q 003810 241 NNKLRDNIEELCRSF 255 (794)
Q Consensus 241 ~rkL~~e~eeLke~l 255 (794)
..+|..++++++.++
T Consensus 101 r~~L~~d~EelR~~l 115 (165)
T 1gs9_A 101 QARLGADMEDVRGRL 115 (165)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 95
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=30.43 E-value=3.8e+02 Score=25.86 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhcchHH
Q 003810 243 KLRDNIEELCRSFQPKE 259 (794)
Q Consensus 243 kL~~e~eeLke~lee~e 259 (794)
.+...+++++.++..-.
T Consensus 108 ~~~~~~e~lr~~l~Py~ 124 (185)
T 3r2p_A 108 KWQEEMELYRQKVEPLR 124 (185)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 33444444444444433
No 96
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.58 E-value=2.7e+02 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 129 VQYEEADAKAQEFSAKLAEAQQKLGQ 154 (794)
Q Consensus 129 ~~~~~~e~~~~~l~~ql~e~q~kl~e 154 (794)
..+...+..|..|+.++.+++..|..
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555555555555555555544
No 97
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=29.43 E-value=1.3e+02 Score=34.55 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAE 203 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~ 203 (794)
..|+++++.+.......|.+.++.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (575)
T 2i1j_A 341 QDRLRQMQEEMERSQANLLEAQDMIL 366 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555556665555555555444443
No 98
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=28.87 E-value=3.8e+02 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 003810 243 KLRDNIEELCRSFQPKEDALEALQLSLQEK 272 (794)
Q Consensus 243 kL~~e~eeLke~lee~e~a~~~Lq~El~~l 272 (794)
-+..+++...++.+..+..+..|..+|..+
T Consensus 84 ~~E~dLeraeeRae~aE~k~~eLEeeL~~~ 113 (147)
T 2b9c_A 84 IIESDLERAEERAELSEGKCAELEEELKTV 113 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 99
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.48 E-value=1.4e+02 Score=25.43 Aligned_cols=53 Identities=28% Similarity=0.362 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003810 472 ALEEALKETEKEMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEI 528 (794)
Q Consensus 472 ~Le~~l~E~E~~l~~a~~er~ra~~elq~~~~~~~rel~e~~~~~ee~r~qir~lE~ 528 (794)
.|+.-+.++|..+.+ .++...+|+.++...+++|+...+++.-+..++++++.
T Consensus 11 ~le~Ri~~LE~klAf----qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 11 ELEARLVELETRLSF----QEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356667666666644 45677778888887777777766666666666665553
No 100
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.91 E-value=3.1e+02 Score=24.09 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Q 003810 186 KEKDDLETRLRDVGETAERASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSFQPKEDALEAL 265 (794)
Q Consensus 186 ~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~lee~e~a~~~L 265 (794)
.-++.|...+..++.....-.+.+..+++-+.++=+.++.+.- .|..|+..+.+-..+..-|.-.|.+......+|
T Consensus 25 kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~Ekl----AkldLE~RLsKtEKDkAiLELkLaE~~Dek~rL 100 (101)
T 1d7m_A 25 KQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKL----ARMELEARLAKTEKDRAILELKLAEAIDEKSKL 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH----HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhc
Confidence 3445556666666666677777778888888888777775433 567899999888888887777776666554443
No 101
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=27.30 E-value=2.2e+02 Score=24.37 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhH
Q 003810 120 AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTEL 166 (794)
Q Consensus 120 ~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el 166 (794)
.+..|.+|+..|...++.|++|+.++.-...+...-..+|...+.++
T Consensus 28 ~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~EL 74 (77)
T 3mtu_E 28 RTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 56678899999999999999999999755555554444444444443
No 102
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.25 E-value=1.1e+02 Score=23.79 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 003810 174 HKRAKQRIQEVQK 186 (794)
Q Consensus 174 h~~~kqriqeLq~ 186 (794)
+.++|+||-.|+.
T Consensus 32 q~KlKqRit~lE~ 44 (46)
T 3swy_A 32 QMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4456777777654
No 103
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.80 E-value=1.2e+02 Score=26.69 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH----HHHhhhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003810 180 RIQEVQKEKDDLETRLRDVGETAE----RASSQCSALQQELERTRQQANDALKAMDIERQQLRSANNKLRDNIEELCRSF 255 (794)
Q Consensus 180 riqeLq~E~~~L~e~leE~e~~~~----~lsk~~ssLq~qL~d~r~qleEe~~~~e~~re~Le~~~rkL~~e~eeLke~l 255 (794)
+|..|+..+..|..++.+.+.... .+...+..+.++|.++|.....-.+.- +.|=..+-.|.-++..-+.-|
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EY----q~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDY----EQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred chHHHHH
Q 003810 256 QPKEDAL 262 (794)
Q Consensus 256 ee~e~a~ 262 (794)
+..+..+
T Consensus 89 EGEe~RL 95 (95)
T 3mov_A 89 EGEEERL 95 (95)
T ss_dssp CCCC---
T ss_pred ccCccCC
No 104
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.61 E-value=3e+02 Score=23.50 Aligned_cols=21 Identities=24% Similarity=0.204 Sum_probs=10.8
Q ss_pred HhhhhhhhhHHhhHHHHHHHH
Q 003810 153 GQEIKGHEDKYTELDSKFTRL 173 (794)
Q Consensus 153 ~ee~~~l~~~~~el~~~~~~l 173 (794)
..+++.|--+.++|-...+.|
T Consensus 8 gkevEnLi~EN~eLl~TKNaL 28 (77)
T 2w83_C 8 GREVENLILENTQLLETKNAL 28 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555
No 105
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.53 E-value=4e+02 Score=25.99 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
.+...+.....++..|-..=..-.+++..|..++.+++.++...+-.+.
T Consensus 89 ~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 89 ALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444334456888888999888777766555554
No 106
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=24.91 E-value=3.1e+02 Score=23.49 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 003810 330 QVLVAEKETTIAEMEAASTGKEARFKAAVETVKGELAHLKREHEKEKESWEAASQAFRKKLEIAESNCIHTEIEAAKLRS 409 (794)
Q Consensus 330 qeeLeelerEnK~L~~~s~~~~~~l~~~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe~aE~~~~r~e~e~~~lk~ 409 (794)
+.+|+.+...+..|..+=.+-.++....++..+..+..++..+...+.++..++.+++..+ .+|-
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll---------------nvK~ 66 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL---------------DIKL 66 (86)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
Q ss_pred HHHhHHHHhhhhhhhH
Q 003810 410 QLESELSVQNQLLSTR 425 (794)
Q Consensus 410 e~E~el~~~~~~l~~~ 425 (794)
.++-++..-.+.++.+
T Consensus 67 ~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 67 ALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCC
No 107
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.84 E-value=2.2e+02 Score=22.49 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 003810 180 RIQEVQKEKDDLETRLRDVGETAERASSQCSALQQELE 217 (794)
Q Consensus 180 riqeLq~E~~~L~e~leE~e~~~~~lsk~~ssLq~qL~ 217 (794)
++.+|+..+..|..+-+.+......+.-++..|..+|.
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444444444444433
No 108
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.59 E-value=2e+02 Score=25.37 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003810 518 NANQQIKSIEIKLDSMN 534 (794)
Q Consensus 518 e~r~qir~lE~~l~~~~ 534 (794)
+-+..|+.++..++.+.
T Consensus 35 erk~~i~~ie~~l~EA~ 51 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEAR 51 (102)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455666666665555
No 109
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.52 E-value=4.9e+02 Score=30.05 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEE 250 (794)
Q Consensus 236 ~Le~~~rkL~~e~ee 250 (794)
.|...++.+.+.++.
T Consensus 292 ~L~~l~~~yv~ain~ 306 (592)
T 1f5n_A 292 RLESLVLTYVNAISS 306 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 455555555555544
No 110
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=24.04 E-value=6.5e+02 Score=26.51 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003810 295 AELSAKHQKNLESLEAQLADAVS 317 (794)
Q Consensus 295 ~E~K~k~q~e~E~LEa~~~E~~~ 317 (794)
.+++.+....++.+..++.-...
T Consensus 150 ~EL~~~~~~~~eeLr~~L~py~e 172 (307)
T 2l7b_A 150 RKLRKRLLRDADDLQKRLAVYQA 172 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhHHHHHHHHhhHHH
Confidence 34444444445555544444443
No 111
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.19 E-value=4.9e+02 Score=24.75 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred ccccCcccCCCCCCCchHHHHHHHHHhhhhhHH-----HHHhhhhcccCCCCCcch--hhhhhhhHHHHHHHHHHhhhhh
Q 003810 38 VMHNGMRDEHGSSNDNNEQLLGLVMELKLQNEF-----LKSQFEGLNTLRPEDDGQ--ESREVVDVKELRERIESLSKEL 110 (794)
Q Consensus 38 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~v~el~eq~e~l~r~~ 110 (794)
|-+|-.+-|.+ --..++|+..+.+| ||-+ ++-+|..|. ..+.+.++ .-..-...+.|..+++.....+
T Consensus 10 ~~~~~~~~~~~--p~~~~elik~L~~l--e~sassDa~vrq~Ia~LP-~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L 84 (152)
T 4fla_A 10 GRENLYFQGAG--PLLTEELIKALQDL--ENAASGDATVRQKIASLP-QEVQDVSLLEKITDKEAAERLSKTVDEACLLL 84 (152)
T ss_dssp ---------------CHHHHHHHHHHH--HHHHHHHHHHHHHHHTSC-GGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC--CCCHHHHHHHHHHh--hccccchHHHHHHHHcCC-ccccCHHHHHHcccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHHHHHHH
Q 003810 111 QEEKETRGA-AEKALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTRLHKRAKQRIQEV 184 (794)
Q Consensus 111 ek~k~~l~~-~~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~lh~~~kqriqeL 184 (794)
...-. +.++++.-..-..-...-..-+..++.+....+++- ...+. ++..+.++.+..+.+|
T Consensus 85 ----~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leey----K~Kl~----rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 85 ----AEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEY----KQKLA----RVTQVRKELKSHIQSL 147 (152)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHhhcC
No 112
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.14 E-value=3.5e+02 Score=23.00 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=7.9
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 003810 205 ASSQCSALQQELERTRQQA 223 (794)
Q Consensus 205 lsk~~ssLq~qL~d~r~ql 223 (794)
+...++.+.++|.++|..+
T Consensus 31 ~q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 113
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=23.13 E-value=9e+02 Score=27.80 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 124 LEHLRVQYEEADAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 124 l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee 155 (794)
+..-+.-...+++..+.|+.+..+.+..+...
T Consensus 489 ~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~ 520 (592)
T 1f5n_A 489 IEVERVKAESAQASAKMLHEMQRKNEQMMEQK 520 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555556777777677777666
No 114
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.08 E-value=4.2e+02 Score=23.92 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003810 468 EQLRALEEALKETEKEMSLVSAEKDKALQELQ-----EALANHDKELAERDAALNNANQQIKSIEIKLDSMN 534 (794)
Q Consensus 468 e~~r~Le~~l~E~E~~l~~a~~er~ra~~elq-----~~~~~~~rel~e~~~~~ee~r~qir~lE~~l~~~~ 534 (794)
..+++|+..+...|.+|..|...--.|.+... ..+. -+..|.....-|..+|.++.+.+....
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~----tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKS----TLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888777777766651 1111 123445555566666666666655444
No 115
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.90 E-value=5.1e+02 Score=24.84 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 241 NNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTL 282 (794)
Q Consensus 241 ~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~ 282 (794)
+..|.+++..|+-++.-.+.+...|+.|-..+ +++|-..
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L---V~RWM~r 136 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQL---VARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33455555555555555566666666666666 6665433
No 116
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.70 E-value=4.8e+02 Score=24.46 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHH
Q 003810 95 DVKELRERIESLSKELQEEKETRG 118 (794)
Q Consensus 95 ~v~el~eq~e~l~r~~ek~k~~l~ 118 (794)
-|..|..-++.+++.+++.+.+|.
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~ 35 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELE 35 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777655554443
No 117
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.38 E-value=4.1e+02 Score=23.54 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHh
Q 003810 139 QEFSAKLAEAQQKLGQEIKGHEDKYT 164 (794)
Q Consensus 139 ~~l~~ql~e~q~kl~ee~~~l~~~~~ 164 (794)
..+.+-+. ..+++.++++.|...+.
T Consensus 54 ~DF~aERa-dREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 54 ADFQAERH-AREKLVEKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHH-HHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH
Confidence 33333333 33444444333333333
No 118
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.32 E-value=7.8e+02 Score=26.78 Aligned_cols=32 Identities=3% Similarity=0.083 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003810 124 LEHLRVQYEEADAKAQEFSAKLAEAQQKLGQE 155 (794)
Q Consensus 124 l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee 155 (794)
+..+++.+.....+.++++..+...+....+.
T Consensus 355 ~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~ 386 (487)
T 3oja_A 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444445555555444444444
No 119
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.21 E-value=3.6e+02 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 357 AVETVKGELAHLKREHEKEKESWEAASQAFRKKLE 391 (794)
Q Consensus 357 ~~E~~~~el~~l~kk~ek~~~e~k~~~~el~~eLe 391 (794)
.+...+..+..++..+...+.++..++.+++..++
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666666664
No 120
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.20 E-value=98 Score=27.80 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 003810 123 ALEHLRVQYEEADAKAQEFSAKLAEAQQKLGQEIKGHEDKYTELDSKFTR--------LHKRAKQRIQEVQKEKDDLETR 194 (794)
Q Consensus 123 ~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ee~~~l~~~~~el~~~~~~--------lh~~~kqriqeLq~E~~~L~e~ 194 (794)
.+..|+..+...+..+.+|......++.+|..- +|...|.-..+++=. .+...+..+..|+.|+..|...
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~--~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR--ALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555331 233444322222211 1344677788888888888887
Q ss_pred HHHHhH
Q 003810 195 LRDVGE 200 (794)
Q Consensus 195 leE~e~ 200 (794)
+..+++
T Consensus 91 v~~lEe 96 (100)
T 1go4_E 91 LRAMER 96 (100)
T ss_dssp HTTCC-
T ss_pred HHHHhc
Confidence 765544
No 121
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.07 E-value=2e+02 Score=31.62 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 127 LRVQYEEADAKAQEFSAKLAEAQQ 150 (794)
Q Consensus 127 l~~~~~~~e~~~~~l~~ql~e~q~ 150 (794)
|+..+.+.+..++.+...+.++..
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 122
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.96 E-value=1.3e+02 Score=23.73 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 121 EKALEHLRVQYEEADAKAQEFSAKLAEAQQKLG 153 (794)
Q Consensus 121 ~~~l~~l~~~~~~~e~~~~~l~~ql~e~q~kl~ 153 (794)
.++++.|+.+..+...++..|..++.+++.+|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777777777777777777777664
No 123
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.70 E-value=3.8e+02 Score=22.88 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003810 539 VEKEAWEKNLQTVEESW 555 (794)
Q Consensus 539 ~~kk~~e~~L~~le~~~ 555 (794)
.....++..|..+...|
T Consensus 63 ~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 63 ADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444555555555
No 124
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=21.38 E-value=3.7e+02 Score=22.67 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 236 QLRSANNKLRDNIEELCRSFQPKEDALEALQLSLQEKDQMLEDMRTLLQ 284 (794)
Q Consensus 236 ~Le~~~rkL~~e~eeLke~lee~e~a~~~Lq~El~~l~~~L~~~r~~lq 284 (794)
.|+..++.|+..++..+..-......+.++...++-.-.+|.+++..+.
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444444444444444334444445555555555444555555554
No 125
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.13 E-value=1.8e+02 Score=24.34 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003810 669 QREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEF 709 (794)
Q Consensus 669 ~re~El~~~~~~~~~Le~~~~e~~~~~~~~~~q~~~Lk~ei 709 (794)
|++.-|..+...+..|+..+..+..++..+..++..|..++
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444555555554444443
No 126
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.66 E-value=9.2e+02 Score=27.01 Aligned_cols=29 Identities=7% Similarity=0.026 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003810 178 KQRIQEVQKEKDDLETRLRDVGETAERAS 206 (794)
Q Consensus 178 kqriqeLq~E~~~L~e~leE~e~~~~~ls 206 (794)
++-|+.|+........++.+.+..+...+
T Consensus 120 ~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~ 148 (464)
T 1m1j_B 120 YQYVNMIDNKLVKTQKQRKDNDIILSEYN 148 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 33444444444444444444333333333
Done!