BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003812
         (793 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7SYB5|DEFI6_DANRE Differentially expressed in FDCP 6 homolog OS=Danio rerio GN=def6
           PE=2 SV=1
          Length = 612

 Score = 39.3 bits (90), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 100/201 (49%), Gaps = 22/201 (10%)

Query: 133 INELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKE----LEEKISIAEKI 188
           +  LR L ++++  ++EL E LK+ +   R    +LE+DEQ+R++    L + + I  K 
Sbjct: 342 LQRLRALQEERERKMAEL-ELLKEAQ---RQAQAMLEQDEQRRRQQHEQLHQALEIQLKE 397

Query: 189 AEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGR---------AHRQVEAR- 238
           AEE R + + E      E  K +T   EL + Q++LE  L +         A R  +AR 
Sbjct: 398 AEEARASMQAEMALKEAEAEKQRTRIRELEAMQQRLEDALQQEIKARQDEEAFRYAQARL 457

Query: 239 ----KEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQML 294
               +E++  ++  +EE   + Q+   E  ++R++++ K + L    R+ +   A +  +
Sbjct: 458 LAEEEEKMKALMGLREEQEEYIQRAQREKQELRQEMESKSRALEEAQRQLEETRANRYRV 517

Query: 295 LKEVKISKAKRRQAELETERW 315
            ++V  ++ K RQA    + W
Sbjct: 518 DQDVVAAQRKLRQASTNVKHW 538


>sp|P05661|MYSA_DROME Myosin heavy chain, muscle OS=Drosophila melanogaster GN=Mhc PE=1
            SV=4
          Length = 1962

 Score = 34.3 bits (77), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 18/153 (11%)

Query: 120  SERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELE 179
            +E  ++++++ A INEL I     +++ +E  + +K  +  ++     LEE+++ R +  
Sbjct: 1608 AEALRMKKKLEADINELEIALDHANKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAR 1667

Query: 180  EKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARK 239
            E++ I+E+     R NA Q      NE+ + +T   +    +RQ E EL  AH       
Sbjct: 1668 EQLGISER-----RANALQ------NELEESRTLLEQADRGRRQAEQELADAH------- 1709

Query: 240  EELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQ 272
            E+L+ V  Q     +  +KL  E+  +  DLD+
Sbjct: 1710 EQLNEVSAQNASISAAKRKLESELQTLHSDLDE 1742


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.127    0.342 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,183,982
Number of Sequences: 539616
Number of extensions: 11475854
Number of successful extensions: 80466
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 3740
Number of HSP's that attempted gapping in prelim test: 57092
Number of HSP's gapped (non-prelim): 14191
length of query: 793
length of database: 191,569,459
effective HSP length: 126
effective length of query: 667
effective length of database: 123,577,843
effective search space: 82426421281
effective search space used: 82426421281
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)