Query 003812
Match_columns 793
No_of_seqs 35 out of 37
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 12:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 96.6 4.4 9.5E-05 53.1 40.9 111 99-214 936-1046(1930)
2 TIGR02169 SMC_prok_A chromosom 96.5 2.7 5.8E-05 50.0 38.2 17 81-97 177-193 (1164)
3 PF13851 GAS: Growth-arrest sp 96.2 1.7 3.8E-05 44.1 22.0 164 128-302 13-191 (201)
4 PRK11637 AmiB activator; Provi 96.0 3.1 6.7E-05 45.8 28.1 17 247-263 212-228 (428)
5 KOG0933 Structural maintenance 96.0 5.2 0.00011 49.6 27.9 224 80-315 676-918 (1174)
6 PRK02224 chromosome segregatio 95.7 6.5 0.00014 46.5 41.1 29 414-442 525-553 (880)
7 TIGR02168 SMC_prok_B chromosom 95.5 7.2 0.00016 46.2 37.5 7 620-626 679-685 (1179)
8 KOG0996 Structural maintenance 95.4 11 0.00024 47.4 34.1 158 114-278 385-545 (1293)
9 TIGR00606 rad50 rad50. This fa 95.1 13 0.00029 46.7 36.9 66 222-287 315-380 (1311)
10 PF09726 Macoilin: Transmembra 93.9 12 0.00026 44.8 23.2 132 146-303 489-629 (697)
11 TIGR03321 alt_F1F0_F0_B altern 93.3 12 0.00025 38.9 19.3 118 166-296 50-170 (246)
12 KOG0980 Actin-binding protein 93.1 29 0.00062 43.0 25.1 168 125-302 345-514 (980)
13 PRK14474 F0F1 ATP synthase sub 93.0 10 0.00023 39.7 18.6 118 166-296 50-170 (250)
14 PF00261 Tropomyosin: Tropomyo 92.7 13 0.00029 38.2 22.5 51 142-192 89-139 (237)
15 COG1340 Uncharacterized archae 92.7 18 0.00039 39.6 26.4 188 82-282 49-249 (294)
16 PF09726 Macoilin: Transmembra 92.6 11 0.00025 45.0 20.4 170 124-307 422-605 (697)
17 COG1196 Smc Chromosome segrega 92.6 35 0.00076 42.7 41.1 73 412-484 695-774 (1163)
18 PRK02224 chromosome segregatio 92.5 28 0.00061 41.4 42.1 60 426-486 572-638 (880)
19 TIGR00606 rad50 rad50. This fa 92.4 40 0.00086 42.7 37.5 68 421-488 739-812 (1311)
20 PRK12704 phosphodiesterase; Pr 91.8 30 0.00065 40.1 22.5 18 267-284 185-202 (520)
21 TIGR03319 YmdA_YtgF conserved 90.6 38 0.00083 39.2 22.0 16 269-284 181-196 (514)
22 PRK06231 F0F1 ATP synthase sub 89.8 26 0.00055 35.9 17.2 102 169-283 96-199 (205)
23 PF12072 DUF3552: Domain of un 89.6 26 0.00055 35.5 23.3 115 116-235 60-174 (201)
24 PRK13461 F0F1 ATP synthase sub 88.6 24 0.00052 34.0 17.6 106 166-284 50-157 (159)
25 CHL00019 atpF ATP synthase CF0 88.5 28 0.0006 34.6 17.3 105 167-284 70-176 (184)
26 PRK00106 hypothetical protein; 88.0 63 0.0014 38.0 21.9 15 618-636 455-469 (535)
27 KOG0971 Microtubule-associated 87.5 50 0.0011 41.4 19.7 152 121-279 369-551 (1243)
28 KOG0250 DNA repair protein RAD 87.4 95 0.002 39.4 26.4 211 123-338 213-451 (1074)
29 PRK11637 AmiB activator; Provi 87.1 55 0.0012 36.4 28.0 15 263-277 221-235 (428)
30 PF12128 DUF3584: Protein of u 86.9 98 0.0021 39.2 44.9 58 402-460 612-669 (1201)
31 CHL00118 atpG ATP synthase CF0 86.9 31 0.00068 33.4 15.3 70 168-237 69-140 (156)
32 PF00038 Filament: Intermediat 86.4 46 0.00099 34.8 25.0 78 78-155 72-152 (312)
33 KOG4674 Uncharacterized conser 86.3 98 0.0021 41.3 22.4 201 105-312 283-512 (1822)
34 PRK14472 F0F1 ATP synthase sub 86.1 36 0.00079 33.4 17.2 99 172-283 69-169 (175)
35 TIGR02168 SMC_prok_B chromosom 86.0 85 0.0018 37.6 38.9 12 620-631 672-683 (1179)
36 PRK13460 F0F1 ATP synthase sub 85.6 39 0.00084 33.3 17.3 101 170-283 65-167 (173)
37 PRK13453 F0F1 ATP synthase sub 85.4 40 0.00087 33.3 17.4 104 168-284 65-170 (173)
38 COG1196 Smc Chromosome segrega 85.0 1.2E+02 0.0025 38.3 39.5 59 414-472 441-499 (1163)
39 KOG0977 Nuclear envelope prote 84.8 93 0.002 36.9 29.5 97 387-487 265-361 (546)
40 PF10174 Cast: RIM-binding pro 84.4 1.1E+02 0.0024 37.6 28.8 171 142-316 389-575 (775)
41 PF12128 DUF3584: Protein of u 84.2 1.3E+02 0.0028 38.2 33.9 84 115-202 595-678 (1201)
42 PRK05759 F0F1 ATP synthase sub 84.1 39 0.00085 32.1 17.3 104 166-282 49-154 (156)
43 PF15070 GOLGA2L5: Putative go 83.4 1.1E+02 0.0024 36.7 26.8 235 76-316 45-306 (617)
44 COG1579 Zn-ribbon protein, pos 83.3 69 0.0015 34.3 18.3 112 125-251 8-121 (239)
45 PHA02562 46 endonuclease subun 83.0 86 0.0019 35.2 29.3 12 42-53 149-160 (562)
46 PF00038 Filament: Intermediat 83.0 65 0.0014 33.7 27.9 62 428-489 218-283 (312)
47 TIGR01843 type_I_hlyD type I s 82.9 70 0.0015 34.1 21.3 20 77-96 77-96 (423)
48 KOG0996 Structural maintenance 82.6 1.6E+02 0.0035 38.0 26.5 152 118-282 403-570 (1293)
49 PF07888 CALCOCO1: Calcium bin 82.6 1.1E+02 0.0024 36.3 30.0 74 226-299 297-381 (546)
50 PRK09174 F0F1 ATP synthase sub 81.9 66 0.0014 33.1 15.4 35 170-204 102-136 (204)
51 PRK14471 F0F1 ATP synthase sub 81.2 55 0.0012 31.7 17.2 104 168-286 55-163 (164)
52 PF06818 Fez1: Fez1; InterPro 80.5 48 0.001 34.8 13.9 54 143-196 8-61 (202)
53 KOG4809 Rab6 GTPase-interactin 80.5 1.4E+02 0.003 35.9 20.2 100 87-193 312-414 (654)
54 PRK13455 F0F1 ATP synthase sub 80.2 65 0.0014 32.0 16.8 66 170-235 76-143 (184)
55 PRK00409 recombination and DNA 79.3 48 0.001 40.2 15.4 32 172-203 547-578 (782)
56 TIGR01069 mutS2 MutS2 family p 79.0 41 0.00089 40.8 14.7 65 143-207 513-577 (771)
57 PRK14473 F0F1 ATP synthase sub 78.4 68 0.0015 31.1 17.8 71 166-236 53-125 (164)
58 PRK07352 F0F1 ATP synthase sub 78.3 72 0.0016 31.4 17.4 67 169-235 67-135 (174)
59 PRK07353 F0F1 ATP synthase sub 78.0 61 0.0013 30.4 15.2 71 166-236 50-122 (140)
60 KOG0982 Centrosomal protein Nu 77.6 1.5E+02 0.0033 34.7 21.0 132 121-261 216-364 (502)
61 PF10146 zf-C4H2: Zinc finger- 77.4 92 0.002 33.0 15.0 66 225-293 52-117 (230)
62 TIGR02680 conserved hypothetic 77.0 2.4E+02 0.0051 36.6 28.5 53 225-280 895-947 (1353)
63 PF01213 CAP_N: Adenylate cycl 74.8 6.8 0.00015 42.8 6.3 76 620-719 5-90 (312)
64 PRK14475 F0F1 ATP synthase sub 74.3 92 0.002 30.6 17.1 70 166-235 55-126 (167)
65 TIGR02680 conserved hypothetic 73.5 2.9E+02 0.0062 35.9 31.3 37 77-113 233-269 (1353)
66 TIGR01144 ATP_synt_b ATP synth 73.5 83 0.0018 29.7 17.2 70 167-236 41-112 (147)
67 COG0711 AtpF F0F1-type ATP syn 73.3 99 0.0021 30.5 17.7 71 172-242 57-129 (161)
68 KOG4673 Transcription factor T 71.5 2.6E+02 0.0057 34.6 21.9 14 77-90 405-418 (961)
69 KOG0161 Myosin class II heavy 71.3 3.9E+02 0.0084 36.5 44.1 70 414-483 1099-1168(1930)
70 PRK13454 F0F1 ATP synthase sub 70.2 1.2E+02 0.0027 30.3 14.9 38 170-207 80-117 (181)
71 KOG0971 Microtubule-associated 69.4 3.2E+02 0.007 34.8 26.5 204 78-297 228-469 (1243)
72 PF00769 ERM: Ezrin/radixin/mo 69.0 1.6E+02 0.0035 31.1 15.9 61 146-207 6-66 (246)
73 PRK08475 F0F1 ATP synthase sub 68.1 1.3E+02 0.0028 29.8 13.3 58 171-237 72-129 (167)
74 PRK09173 F0F1 ATP synthase sub 67.5 1.2E+02 0.0027 29.2 16.9 37 168-204 49-85 (159)
75 COG1579 Zn-ribbon protein, pos 66.5 1.9E+02 0.0041 31.1 19.1 77 124-202 21-100 (239)
76 KOG0933 Structural maintenance 66.3 3.8E+02 0.0083 34.5 23.2 232 77-322 687-943 (1174)
77 KOG1937 Uncharacterized conser 66.3 2.7E+02 0.006 32.8 19.8 149 142-313 266-424 (521)
78 PF10146 zf-C4H2: Zinc finger- 63.7 1.9E+02 0.004 30.8 13.7 99 146-269 2-103 (230)
79 KOG0243 Kinesin-like protein [ 63.2 4.3E+02 0.0093 34.0 19.8 54 86-140 406-461 (1041)
80 PRK09039 hypothetical protein; 62.8 2.5E+02 0.0054 31.1 19.1 12 127-138 46-57 (343)
81 PF05701 WEMBL: Weak chloropla 62.1 3.1E+02 0.0067 31.9 34.5 65 209-273 124-191 (522)
82 PF08317 Spc7: Spc7 kinetochor 60.9 2.5E+02 0.0054 30.5 18.4 70 229-301 219-288 (325)
83 PRK12704 phosphodiesterase; Pr 60.8 3.3E+02 0.0072 31.9 19.0 42 258-299 121-164 (520)
84 PRK13428 F0F1 ATP synthase sub 60.4 3.1E+02 0.0067 31.4 17.0 60 176-235 56-117 (445)
85 PF12718 Tropomyosin_1: Tropom 59.1 1.9E+02 0.004 28.5 17.9 111 146-264 15-125 (143)
86 PF10174 Cast: RIM-binding pro 58.9 4.4E+02 0.0096 32.7 36.0 78 77-162 77-163 (775)
87 KOG0963 Transcription factor/C 58.4 4.2E+02 0.0091 32.3 18.3 136 121-271 122-266 (629)
88 PF12329 TMF_DNA_bd: TATA elem 58.3 42 0.00091 29.7 6.8 36 127-162 12-50 (74)
89 PF00430 ATP-synt_B: ATP synth 58.1 97 0.0021 28.2 9.4 65 169-242 47-111 (132)
90 PRK01156 chromosome segregatio 57.9 4.2E+02 0.0091 32.2 24.8 8 409-416 867-874 (895)
91 PF15619 Lebercilin: Ciliary p 57.0 2.4E+02 0.0052 29.1 17.1 140 127-288 12-152 (194)
92 PRK08476 F0F1 ATP synthase sub 55.9 2E+02 0.0043 27.8 14.9 61 173-242 59-119 (141)
93 PF04912 Dynamitin: Dynamitin 55.0 1.6E+02 0.0036 32.5 12.2 63 614-676 205-281 (388)
94 PF00769 ERM: Ezrin/radixin/mo 54.9 2.9E+02 0.0062 29.3 14.4 21 169-189 1-21 (246)
95 PF05816 TelA: Toxic anion res 54.2 38 0.00082 36.8 7.1 111 613-737 44-159 (333)
96 PF06005 DUF904: Protein of un 54.2 1.2E+02 0.0026 27.0 9.0 62 222-283 7-68 (72)
97 KOG0018 Structural maintenance 53.8 6.2E+02 0.013 32.9 24.3 227 84-323 213-472 (1141)
98 PRK04863 mukB cell division pr 53.4 6.9E+02 0.015 33.3 34.8 52 258-310 408-459 (1486)
99 PRK00409 recombination and DNA 53.3 4.8E+02 0.01 32.1 16.5 13 107-119 441-453 (782)
100 COG2433 Uncharacterized conser 52.8 1.5E+02 0.0032 35.9 11.9 77 120-196 422-504 (652)
101 PF05546 She9_MDM33: She9 / Md 52.0 3.2E+02 0.007 29.1 14.9 32 212-243 92-123 (207)
102 TIGR03319 YmdA_YtgF conserved 51.9 4.6E+02 0.0099 30.8 19.5 42 258-299 115-158 (514)
103 CHL00019 atpF ATP synthase CF0 51.5 2.6E+02 0.0057 27.9 15.0 14 250-263 163-176 (184)
104 PRK08476 F0F1 ATP synthase sub 51.3 2.4E+02 0.0051 27.3 15.3 27 216-242 104-130 (141)
105 PF15070 GOLGA2L5: Putative go 50.9 5.3E+02 0.011 31.2 21.6 122 175-298 117-260 (617)
106 PF08172 CASP_C: CASP C termin 50.5 16 0.00036 38.6 3.6 38 429-466 89-126 (248)
107 PRK11546 zraP zinc resistance 50.1 1E+02 0.0022 30.8 8.7 62 226-287 61-122 (143)
108 PHA02562 46 endonuclease subun 48.9 4.4E+02 0.0096 29.8 27.9 24 256-279 332-355 (562)
109 TIGR01069 mutS2 MutS2 family p 48.2 5.8E+02 0.013 31.4 16.2 10 108-117 437-446 (771)
110 PRK03918 chromosome segregatio 48.1 5.6E+02 0.012 30.7 34.0 15 115-129 136-154 (880)
111 PF10473 CENP-F_leu_zip: Leuci 47.4 3E+02 0.0066 27.4 12.4 44 227-270 39-82 (140)
112 TIGR01000 bacteriocin_acc bact 47.0 4.7E+02 0.01 29.5 18.1 21 78-98 101-121 (457)
113 KOG0612 Rho-associated, coiled 46.3 8.3E+02 0.018 32.2 24.0 49 78-137 512-560 (1317)
114 PTZ00491 major vault protein; 46.3 6.3E+02 0.014 31.9 16.0 93 146-242 700-792 (850)
115 PF15290 Syntaphilin: Golgi-lo 45.0 4.6E+02 0.01 29.4 13.2 111 142-305 65-175 (305)
116 KOG0249 LAR-interacting protei 44.9 5.9E+02 0.013 32.0 15.1 109 194-302 138-257 (916)
117 PF08232 Striatin: Striatin fa 43.4 51 0.0011 32.0 5.4 30 113-142 18-47 (134)
118 PRK04863 mukB cell division pr 43.1 9.7E+02 0.021 32.0 26.7 19 17-35 257-275 (1486)
119 PF13851 GAS: Growth-arrest sp 42.6 4E+02 0.0087 27.5 22.4 168 80-278 26-199 (201)
120 PF15619 Lebercilin: Ciliary p 41.4 4.2E+02 0.0092 27.4 19.9 162 78-277 23-194 (194)
121 PF10168 Nup88: Nuclear pore c 41.0 5.6E+02 0.012 31.4 14.5 15 289-303 699-713 (717)
122 PRK03918 chromosome segregatio 41.0 7.1E+02 0.015 29.9 41.0 13 667-679 744-756 (880)
123 PF12240 Angiomotin_C: Angiomo 40.7 4.8E+02 0.01 27.9 14.2 38 122-162 26-74 (205)
124 PF04111 APG6: Autophagy prote 40.5 5.3E+02 0.012 28.3 13.3 11 258-268 124-134 (314)
125 PRK10884 SH3 domain-containing 40.2 2.9E+02 0.0063 28.8 10.6 17 175-191 120-136 (206)
126 PRK09174 F0F1 ATP synthase sub 40.0 4.5E+02 0.0097 27.3 16.9 9 228-236 151-159 (204)
127 KOG0163 Myosin class VI heavy 40.0 9E+02 0.02 30.8 16.5 49 113-161 861-909 (1259)
128 TIGR01005 eps_transp_fam exopo 39.9 7.3E+02 0.016 29.7 19.2 24 260-283 375-398 (754)
129 KOG1029 Endocytic adaptor prot 39.8 9.1E+02 0.02 30.8 21.0 233 11-273 285-561 (1118)
130 KOG0612 Rho-associated, coiled 39.0 1.1E+03 0.023 31.4 23.1 19 650-668 1025-1043(1317)
131 PRK00846 hypothetical protein; 39.0 1.3E+02 0.0028 27.4 6.8 60 419-488 2-61 (77)
132 PRK10869 recombination and rep 38.3 7.3E+02 0.016 29.2 20.1 70 118-192 155-227 (553)
133 PF05557 MAD: Mitotic checkpoi 38.3 10 0.00023 44.7 0.0 55 435-489 373-427 (722)
134 PF05667 DUF812: Protein of un 37.9 8E+02 0.017 29.6 20.4 76 195-270 405-484 (594)
135 PF10473 CENP-F_leu_zip: Leuci 37.0 4.4E+02 0.0096 26.3 16.9 68 121-192 18-85 (140)
136 PRK06231 F0F1 ATP synthase sub 36.4 5E+02 0.011 26.8 17.5 13 23-35 12-24 (205)
137 PF05557 MAD: Mitotic checkpoi 36.4 12 0.00025 44.3 0.0 71 119-189 60-130 (722)
138 TIGR03185 DNA_S_dndD DNA sulfu 35.8 8.1E+02 0.018 29.1 28.8 65 78-142 206-284 (650)
139 PRK10884 SH3 domain-containing 34.8 4.7E+02 0.01 27.4 11.1 69 124-192 90-158 (206)
140 TIGR03185 DNA_S_dndD DNA sulfu 34.2 8.6E+02 0.019 28.9 27.0 63 79-141 228-290 (650)
141 PRK00106 hypothetical protein; 34.0 8.9E+02 0.019 29.0 23.3 8 390-397 298-305 (535)
142 PF09731 Mitofilin: Mitochondr 33.8 8.1E+02 0.017 28.4 19.4 74 176-249 314-394 (582)
143 PRK13454 F0F1 ATP synthase sub 33.5 5.1E+02 0.011 26.1 15.5 8 224-231 136-143 (181)
144 COG2433 Uncharacterized conser 33.2 3.2E+02 0.0069 33.3 10.6 37 125-161 413-452 (652)
145 PF07111 HCR: Alpha helical co 33.0 1.1E+03 0.023 29.6 22.0 29 113-141 235-263 (739)
146 PRK04778 septation ring format 32.6 8.8E+02 0.019 28.5 26.2 68 205-272 296-366 (569)
147 PRK03963 V-type ATP synthase s 32.5 5.1E+02 0.011 25.7 11.9 25 178-202 19-43 (198)
148 COG4913 Uncharacterized protei 31.6 5.7E+02 0.012 32.2 12.4 64 143-225 614-677 (1104)
149 smart00787 Spc7 Spc7 kinetocho 31.6 7.5E+02 0.016 27.4 15.3 138 45-209 134-282 (312)
150 PF09304 Cortex-I_coil: Cortex 31.4 5E+02 0.011 25.3 12.1 80 174-266 10-91 (107)
151 PRK06568 F0F1 ATP synthase sub 31.3 5.6E+02 0.012 25.8 15.0 18 218-235 103-120 (154)
152 PF02050 FliJ: Flagellar FliJ 31.2 3.4E+02 0.0075 23.4 13.0 82 80-161 11-93 (123)
153 PF11932 DUF3450: Protein of u 31.1 4.6E+02 0.01 27.3 10.4 73 116-192 45-117 (251)
154 PF07111 HCR: Alpha helical co 30.9 1.1E+03 0.025 29.3 31.1 97 128-228 74-178 (739)
155 PF03915 AIP3: Actin interacti 30.7 4.3E+02 0.0093 30.6 10.9 81 230-322 199-283 (424)
156 TIGR03017 EpsF chain length de 30.5 7.7E+02 0.017 27.2 18.1 180 103-283 150-364 (444)
157 PTZ00419 valyl-tRNA synthetase 30.2 1.5E+02 0.0033 36.9 7.8 66 118-194 927-992 (995)
158 KOG2072 Translation initiation 29.8 1.3E+03 0.028 29.6 30.4 31 166-197 670-700 (988)
159 KOG4010 Coiled-coil protein TP 29.7 84 0.0018 33.1 4.7 35 120-154 44-81 (208)
160 COG4026 Uncharacterized protei 29.0 84 0.0018 34.1 4.7 49 440-488 156-204 (290)
161 PF05622 HOOK: HOOK protein; 28.9 19 0.0004 42.7 0.0 103 124-232 243-359 (713)
162 PF06785 UPF0242: Uncharacteri 28.9 5.1E+02 0.011 29.8 10.7 99 387-489 47-155 (401)
163 KOG2675 Adenylate cyclase-asso 28.9 1.8E+02 0.004 34.0 7.6 75 620-718 8-93 (480)
164 KOG4674 Uncharacterized conser 28.9 1.7E+03 0.037 30.7 36.3 309 92-487 151-487 (1822)
165 PF04201 TPD52: Tumour protein 28.8 92 0.002 31.9 4.7 37 118-154 27-66 (162)
166 KOG0979 Structural maintenance 28.5 1.4E+03 0.031 29.7 19.5 64 406-469 637-700 (1072)
167 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.3 5.3E+02 0.012 24.6 17.1 32 176-207 27-58 (132)
168 PF09763 Sec3_C: Exocyst compl 27.9 1.1E+03 0.024 28.2 18.5 43 384-426 210-260 (701)
169 PRK12705 hypothetical protein; 27.1 1.1E+03 0.024 28.0 22.3 15 616-634 426-440 (508)
170 PF09731 Mitofilin: Mitochondr 27.1 1E+03 0.022 27.6 24.2 142 255-406 342-488 (582)
171 PF07888 CALCOCO1: Calcium bin 27.0 1.2E+03 0.026 28.2 40.5 46 78-141 140-185 (546)
172 PF01576 Myosin_tail_1: Myosin 26.4 22 0.00048 43.4 0.0 55 428-482 597-651 (859)
173 PF09304 Cortex-I_coil: Cortex 26.2 6.2E+02 0.013 24.7 14.3 87 77-192 12-98 (107)
174 PF03908 Sec20: Sec20; InterP 26.2 4.1E+02 0.0089 23.9 7.9 63 226-288 8-70 (92)
175 PRK13455 F0F1 ATP synthase sub 26.0 6.7E+02 0.014 25.0 15.9 7 117-123 54-60 (184)
176 PRK10361 DNA recombination pro 26.0 1.2E+03 0.025 27.8 23.2 145 116-287 56-220 (475)
177 PF04094 DUF390: Protein of un 25.7 1.4E+03 0.031 28.8 15.9 31 110-140 492-522 (828)
178 COG1340 Uncharacterized archae 25.6 9.8E+02 0.021 26.8 25.5 53 81-144 13-65 (294)
179 KOG0946 ER-Golgi vesicle-tethe 25.5 1.5E+03 0.033 29.0 18.6 39 176-214 782-822 (970)
180 PF04508 Pox_A_type_inc: Viral 25.5 59 0.0013 23.9 2.0 20 441-460 2-21 (23)
181 PF06428 Sec2p: GDP/GTP exchan 25.2 1.3E+02 0.0027 28.5 4.7 74 167-243 2-75 (100)
182 PF05667 DUF812: Protein of un 25.0 1.3E+03 0.028 28.0 18.9 74 198-271 491-564 (594)
183 PRK14471 F0F1 ATP synthase sub 24.9 6.5E+02 0.014 24.5 15.7 11 222-232 100-110 (164)
184 PF04880 NUDE_C: NUDE protein, 24.7 79 0.0017 32.3 3.5 52 223-278 4-55 (166)
185 PF06637 PV-1: PV-1 protein (P 24.6 1.2E+03 0.026 27.4 12.8 21 205-225 352-373 (442)
186 KOG0976 Rho/Rac1-interacting s 24.5 1.6E+03 0.035 28.9 27.2 205 78-312 288-504 (1265)
187 PF12325 TMF_TATA_bd: TATA ele 24.4 6.7E+02 0.014 24.4 11.1 38 123-160 26-63 (120)
188 PF05529 Bap31: B-cell recepto 23.8 2.9E+02 0.0063 27.5 7.2 28 257-284 157-184 (192)
189 PRK03963 V-type ATP synthase s 23.7 7.3E+02 0.016 24.6 14.3 26 257-284 88-113 (198)
190 KOG4466 Component of histone d 23.6 8.6E+02 0.019 27.3 11.1 70 174-243 36-114 (291)
191 KOG3758 Uncharacterized conser 23.5 1.5E+03 0.032 28.1 14.7 85 206-294 62-149 (655)
192 PTZ00121 MAEBL; Provisional 23.4 2.1E+03 0.045 29.8 24.3 12 711-722 2014-2025(2084)
193 COG4942 Membrane-bound metallo 23.4 1.2E+03 0.027 27.2 28.4 85 91-187 38-126 (420)
194 PF05622 HOOK: HOOK protein; 23.4 27 0.00059 41.4 0.0 53 434-486 548-601 (713)
195 PRK10328 DNA binding protein, 23.3 3.5E+02 0.0077 26.7 7.5 28 135-162 10-38 (134)
196 PRK09039 hypothetical protein; 23.0 1.1E+03 0.023 26.3 17.7 40 240-279 123-162 (343)
197 COG4026 Uncharacterized protei 22.7 5E+02 0.011 28.5 8.9 50 151-204 145-194 (290)
198 PRK14472 F0F1 ATP synthase sub 22.5 7.6E+02 0.016 24.4 16.2 16 249-264 156-171 (175)
199 KOG2163 Centromere/kinetochore 22.5 3.1E+02 0.0068 33.5 8.1 136 617-766 567-710 (719)
200 PRK07353 F0F1 ATP synthase sub 22.3 6.5E+02 0.014 23.6 15.7 86 150-242 30-117 (140)
201 PF02841 GBP_C: Guanylate-bind 22.3 8.9E+02 0.019 25.9 10.9 55 81-135 197-251 (297)
202 KOG4691 Uncharacterized conser 22.1 1E+03 0.022 25.7 13.9 104 175-313 61-165 (227)
203 PRK02793 phi X174 lysis protei 22.0 3.4E+02 0.0073 24.1 6.4 48 433-487 8-55 (72)
204 PF03962 Mnd1: Mnd1 family; I 21.9 5.9E+02 0.013 26.1 9.1 58 78-140 66-123 (188)
205 PF10458 Val_tRNA-synt_C: Valy 21.8 4.7E+02 0.01 22.3 7.1 62 120-192 4-65 (66)
206 TIGR02231 conserved hypothetic 21.8 8.8E+02 0.019 27.9 11.4 18 123-140 74-91 (525)
207 TIGR01554 major_cap_HK97 phage 21.8 4.4E+02 0.0095 28.8 8.7 19 123-141 2-20 (378)
208 PLN02943 aminoacyl-tRNA ligase 21.6 2.6E+02 0.0056 35.0 7.6 65 119-194 888-952 (958)
209 PRK04778 septation ring format 21.6 1.4E+03 0.029 27.0 19.8 28 291-318 399-426 (569)
210 PF08614 ATG16: Autophagy prot 21.0 7.3E+02 0.016 25.0 9.4 26 108-141 20-45 (194)
211 PF01576 Myosin_tail_1: Myosin 21.0 32 0.0007 42.0 0.0 130 177-313 504-640 (859)
212 smart00338 BRLZ basic region l 20.9 1.7E+02 0.0037 24.5 4.2 34 435-468 28-61 (65)
213 PRK08404 V-type ATP synthase s 20.9 7E+02 0.015 23.3 13.3 77 169-245 6-84 (103)
214 smart00338 BRLZ basic region l 20.9 1.3E+02 0.0029 25.1 3.6 39 446-484 25-63 (65)
215 KOG1103 Predicted coiled-coil 20.9 1.4E+03 0.03 26.8 21.3 43 96-145 129-171 (561)
216 PF05701 WEMBL: Weak chloropla 20.8 1.4E+03 0.03 26.8 31.1 26 113-138 211-236 (522)
217 PTZ00121 MAEBL; Provisional 20.8 2.3E+03 0.05 29.4 27.3 9 676-684 1954-1962(2084)
218 PRK14473 F0F1 ATP synthase sub 20.8 7.9E+02 0.017 23.9 17.5 85 150-241 33-119 (164)
219 PRK13461 F0F1 ATP synthase sub 20.6 7.8E+02 0.017 23.8 17.5 68 166-237 43-112 (159)
220 PF04859 DUF641: Plant protein 20.6 1.4E+02 0.0031 29.4 4.2 47 443-489 76-122 (131)
221 PF15397 DUF4618: Domain of un 20.5 1.2E+03 0.025 25.8 25.0 72 90-161 8-79 (258)
222 PF08317 Spc7: Spc7 kinetochor 20.5 1.1E+03 0.025 25.6 23.7 39 258-303 227-265 (325)
223 KOG4807 F-actin binding protei 20.1 1.5E+03 0.032 26.9 21.9 44 261-304 519-562 (593)
224 PF04111 APG6: Autophagy prote 20.1 1.2E+03 0.026 25.7 12.0 6 390-395 241-246 (314)
225 CHL00118 atpG ATP synthase CF0 20.0 8.2E+02 0.018 23.8 15.8 29 166-194 60-88 (156)
226 COG4942 Membrane-bound metallo 20.0 1.4E+03 0.031 26.7 24.2 23 121-143 88-110 (420)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.60 E-value=4.4 Score=53.12 Aligned_cols=111 Identities=22% Similarity=0.291 Sum_probs=68.8
Q ss_pred hhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 003812 99 EDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKEL 178 (793)
Q Consensus 99 EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~kel 178 (793)
+....+.++..=..+..+-|..|...+-++|..|.+++..++ +.++.|.+.-+++|.....-...+..++.+-+.|
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~----e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLD----ENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666667777777777777777777777743 4555666665666665554445566666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Q 003812 179 EEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAF 214 (793)
Q Consensus 179 eekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~ 214 (793)
....+..|...++|..++.++=.. ..++.|++..+
T Consensus 1012 ~k~~~kle~~l~~le~~le~e~~~-r~e~Ek~~rkl 1046 (1930)
T KOG0161|consen 1012 NKAKAKLEQQLDDLEVTLEREKRI-RMELEKAKRKL 1046 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 777777777777776666544333 34444444444
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.54 E-value=2.7 Score=50.01 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHhh
Q 003812 81 QKLDAAEREIEELKKLR 97 (793)
Q Consensus 81 ~kL~~AE~ei~eLKkrR 97 (793)
.+|..+...+.+|+...
T Consensus 177 ~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 177 EELEEVEENIERLDLII 193 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 3
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.17 E-value=1.7 Score=44.14 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003812 128 QIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (793)
Q Consensus 128 qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (793)
+|..--++|.. .+=.-|..|++.+.+|..-....++.+-+...+-+.|.+-|..++.-+.+|+ +.+..+.
T Consensus 13 ~iK~YYndIT~---~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~----k~L~~y~--- 82 (201)
T PF13851_consen 13 EIKNYYNDITL---NNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELR----KQLKNYE--- 82 (201)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHH---
Confidence 33344444443 4555677788888888777776667777778888889999999998887774 4444555
Q ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhH----HHHHH-----------HHHHHHHHhhhhhh
Q 003812 208 RKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESV----SFAQK-----------LSLEIVKMRKDLDQ 272 (793)
Q Consensus 208 ~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~----~~~qk-----------Ls~El~klRkd~e~ 272 (793)
|++..+-.+.+....++.+|..-.-+.+.....+..|...+++-- .+++. |---+..|...+|.
T Consensus 83 -kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 83 -KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667666666666666666666555555555555544444443321 11211 23456788999999
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 003812 273 KDKILSAMLRKSKSDTAEKQMLLKEVKISK 302 (793)
Q Consensus 273 KDkilSaMLrkSklD~~EKemLlrEvk~~k 302 (793)
||+-|+.+|..+++|++.-..+.+.|.-+-
T Consensus 162 keaqL~evl~~~nldp~~~~~v~~~l~~~l 191 (201)
T PF13851_consen 162 KEAQLNEVLAAANLDPAALSQVSKKLEDVL 191 (201)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998777766655443
No 4
>PRK11637 AmiB activator; Provisional
Probab=96.05 E-value=3.1 Score=45.81 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=6.5
Q ss_pred HhhhhhHHHHHHHHHHH
Q 003812 247 EQKEESVSFAQKLSLEI 263 (793)
Q Consensus 247 e~kee~~~~~qkLs~El 263 (793)
..+.+.......|..++
T Consensus 212 ~~k~e~~~~l~~L~~~~ 228 (428)
T PRK11637 212 QARNERKKTLTGLESSL 228 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333443333
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.98 E-value=5.2 Score=49.59 Aligned_cols=224 Identities=21% Similarity=0.286 Sum_probs=121.4
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---------------ch
Q 003812 80 SQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK---------------KD 144 (793)
Q Consensus 80 ~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~---------------k~ 144 (793)
.|+|..++.| ++..+.|=+..+.-..++++.... =+.|.+|+...+-++.-+..+ ..
T Consensus 676 l~~l~~~~~~---~~~~q~el~~le~eL~~le~~~~k-----f~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~ 747 (1174)
T KOG0933|consen 676 LQKLKQAQKE---LRAIQKELEALERELKSLEAQSQK-----FRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELL 747 (1174)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 3455555554 556677777888888888887543 257888998888888777652 34
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhh
Q 003812 145 ESISELNEKLKDMELLVRSKDRVLEEDEQKR----KELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSN 220 (793)
Q Consensus 145 ~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~----keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~ 220 (793)
+.+.+++..+++.+.++-..+.++.--+++. ..=+.||..+++-- .++++.+++-+.++.||.-.+--|.--
T Consensus 748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~kei----k~~k~~~e~~~~~~ek~~~e~e~l~lE 823 (1174)
T KOG0933|consen 748 EEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEI----KTAKQRAEESSKELEKRENEYERLQLE 823 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777643333332222222 23344555555443 466777788788887777666333333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHH
Q 003812 221 QRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKI 300 (793)
Q Consensus 221 QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~ 300 (793)
..+++.++...-.++...+..++++-....+.-+=+.+.-.+..+...++.+-++.+...=..-+--..+.+-.+.|...
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhc
Confidence 34444555555555555555555444444444333344444444444444433332222111111112344445555555
Q ss_pred HHHHHHHhHHHHHHH
Q 003812 301 SKAKRRQAELETERW 315 (793)
Q Consensus 301 ~kAkrK~AE~E~erW 315 (793)
.+-.++--+.|-.+.
T Consensus 904 ~~l~~kkle~e~~~~ 918 (1174)
T KOG0933|consen 904 GELERKKLEHEVTKL 918 (1174)
T ss_pred ccchHHHHHhHHHHh
Confidence 555555555544443
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=95.66 E-value=6.5 Score=46.53 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=16.6
Q ss_pred HHHHHHHhccchhhHHHHHHHhhhhHHHH
Q 003812 414 LEAFAEQMRMKDEKLEGYRWRLLSMEIES 442 (793)
Q Consensus 414 IeAF~eQmRlKDEKLEaFRwrllsmE~E~ 442 (793)
|+...+++--.-++++.++-++-.++.++
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556666666665555444
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.55 E-value=7.2 Score=46.23 Aligned_cols=7 Identities=14% Similarity=0.610 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 003812 620 LKRLKQQ 626 (793)
Q Consensus 620 iKrLkQq 626 (793)
|..|+++
T Consensus 679 ~~~l~~~ 685 (1179)
T TIGR02168 679 IEELEEK 685 (1179)
T ss_pred HHHHHHH
Confidence 3333333
No 8
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=11 Score=47.42 Aligned_cols=158 Identities=19% Similarity=0.261 Sum_probs=89.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003812 114 QEQSWFSERKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAE 190 (793)
Q Consensus 114 heqsW~~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~ 190 (793)
..-+|+.++..|-++=-.....+-.+-. +-++.+.+...+..|++.+.+..+..+++=+.+-.+|++.+...+..++
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666555555544444444444332 2233455555666667766665555555556666788888888888888
Q ss_pred HHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 003812 191 ELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDL 270 (793)
Q Consensus 191 eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~ 270 (793)
+....++.+.+..++++.++.+.. ..+..++++|...++-+.+||+-++...+...-=+.+|..-|..++.++
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel-------~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~ 537 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKEL-------MPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL 537 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887777766 2233444445555555555555444444444444444444444444444
Q ss_pred hhhHHHHH
Q 003812 271 DQKDKILS 278 (793)
Q Consensus 271 e~KDkilS 278 (793)
+.+--.|.
T Consensus 538 ~e~~~~l~ 545 (1293)
T KOG0996|consen 538 KEKKTELD 545 (1293)
T ss_pred HHHHHHHH
Confidence 33333333
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.10 E-value=13 Score=46.69 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Q 003812 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSD 287 (793)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD 287 (793)
.+.+.++...-.++...+.++..+............+|..+....-+.+...+.++.-+-.+..++
T Consensus 315 ~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1311)
T TIGR00606 315 REKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD 380 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 334455555555556666666666666666666677888888888888888888887777666643
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.93 E-value=12 Score=44.79 Aligned_cols=132 Identities=30% Similarity=0.335 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHhhHHHHHHHHhhHHHH
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAK-QEAQEHSNEIRKHKTAFIELVSNQRQL 224 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~ak-rEaqehS~dl~Khk~a~lEl~s~Qrql 224 (793)
.+..|+++|.|-...-.+-++++-++++.+++.+++.+.+ ++. ..+. -|..++ ++...++|
T Consensus 489 ~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~--~~~---~~~~r~e~~e~-------------~r~r~~~l 550 (697)
T PF09726_consen 489 SLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARA--LAQ---AQATRQECAES-------------CRQRRRQL 550 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc--ccc---chhccchhHHH-------------HHHHHHHH
Confidence 5566666666655555555555555555555544433222 110 0000 011111 23333444
Q ss_pred HHHHHH-------HHHHHHHhHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHH
Q 003812 225 EAELGR-------AHRQVEARKEELDLVLEQ-KEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLK 296 (793)
Q Consensus 225 EaeL~r-------A~~~l~a~~~EL~sv~e~-kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlr 296 (793)
|.|+.+ .-.++..++.|+..+... ++ +..=++-|.+.|..||-...+=+.=||+ .+.=|.||..
T Consensus 551 E~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sLsa-------EtriKldLfs 622 (697)
T PF09726_consen 551 ESELKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSLSA-------ETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHH
Confidence 444444 444444445555444443 33 3334567777888887766665655555 6777899986
Q ss_pred HHHHHHH
Q 003812 297 EVKISKA 303 (793)
Q Consensus 297 Evk~~kA 303 (793)
-+--+|.
T Consensus 623 aLg~akr 629 (697)
T PF09726_consen 623 ALGDAKR 629 (697)
T ss_pred HHHHHHH
Confidence 5544433
No 11
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=93.26 E-value=12 Score=38.85 Aligned_cols=118 Identities=25% Similarity=0.278 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
+...+......+.+.+|+.+..-+.++.+.++.+++....++. -+.++--...+++.++|.|-.+|..++..-=
T Consensus 50 ~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei---- 125 (246)
T TIGR03321 50 TKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRT---- 125 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4445556666788888999999999999988888887655553 3333333555666666666666665553322
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc-cCChHHHHHHHH
Q 003812 244 LVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS-KSDTAEKQMLLK 296 (793)
Q Consensus 244 sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS-klD~~EKemLlr 296 (793)
..-++.+|.++..+.. +.+.-.++|..++.+- .+..+++.-|+.
T Consensus 126 -----~~la~~~A~kil~~~~----d~~~~~~lid~~i~~l~~l~~~~~~~l~~ 170 (246)
T TIGR03321 126 -----GAEVFAIARKVLTDLA----DTDLEERMVDVFVQRLRTLDPDEKAALAE 170 (246)
T ss_pred -----HHHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2335566666665433 3344457888888555 666666777753
No 12
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.13 E-value=29 Score=43.01 Aligned_cols=168 Identities=21% Similarity=0.277 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 003812 125 LRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEE--LRENAKQEAQE 202 (793)
Q Consensus 125 Lr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~e--LrE~akrEaqe 202 (793)
|..++..++.|.+..=.+...++.+++-.+.+...++. ++.++.++=+.++...++.-..+-.- |.+.+.+.+.-
T Consensus 345 ~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~q---e~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~ 421 (980)
T KOG0980|consen 345 LKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQ---ENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALA 421 (980)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444444444555666677777777777666 67777665555555555443333221 23444433333
Q ss_pred hhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 003812 203 HSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLR 282 (793)
Q Consensus 203 hS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLr 282 (793)
-=....||++..-+|+...-.|=...+-..+|++.+..-++.+.+.+.+-+-+..+++.+....-.-.|.+-++++.|
T Consensus 422 ~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l-- 499 (980)
T KOG0980|consen 422 AENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL-- 499 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--
Confidence 233445888888888888877778888888888888888888888888888888888887777655666666666655
Q ss_pred hccCChHHHHHHHHHHHHHH
Q 003812 283 KSKSDTAEKQMLLKEVKISK 302 (793)
Q Consensus 283 kSklD~~EKemLlrEvk~~k 302 (793)
+.|..-|+.|++..+
T Consensus 500 -----~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 500 -----RQELALLLIELEELQ 514 (980)
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 334444555544433
No 13
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=93.02 E-value=10 Score=39.70 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
...++.+....+.+.+|+.++.-+.++.+.++.+++....++. -+.++--....++.+++.|-.+|..++..--.
T Consensus 50 ~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~--- 126 (250)
T PRK14474 50 QRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTG--- 126 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4445566667788888899999999998988888888666553 22333335556666666666666665544333
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hccCChHHHHHHHH
Q 003812 244 LVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLR-KSKSDTAEKQMLLK 296 (793)
Q Consensus 244 sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLr-kSklD~~EKemLlr 296 (793)
+-+..+|.++..++. +.+.-.++|...+. -..++.++|.-|..
T Consensus 127 ------~la~~~A~kiL~~~~----d~~~~~~lid~~i~~l~~l~~~~r~~l~~ 170 (250)
T PRK14474 127 ------QQMVKIIRAALADLA----NATLEQQIVGIFIARLEHLSEAERQALAN 170 (250)
T ss_pred ------HHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHhcccCHHHHHHHHh
Confidence 335667777766544 33333478888884 45888888888863
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.73 E-value=13 Score=38.19 Aligned_cols=51 Identities=35% Similarity=0.439 Sum_probs=38.3
Q ss_pred hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 142 KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (793)
Q Consensus 142 ~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (793)
.-+..+..|+.+|++....+...+...++..+|...++..|..++.=+..+
T Consensus 89 ~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 89 SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA 139 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456788888899999888888777777777777777777776666655443
No 15
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.72 E-value=18 Score=39.64 Aligned_cols=188 Identities=23% Similarity=0.323 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh------chhhHHHHHHHHH
Q 003812 82 KLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK------KDESISELNEKLK 155 (793)
Q Consensus 82 kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~------k~~~i~EL~~kLk 155 (793)
++..--+++.+++..|. .-|++|..+ +.+|+.+...+..|+++++.+... ....+..|++.+.
T Consensus 49 kvrE~~e~~~elr~~rd---eineev~el--------K~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~ 117 (294)
T COG1340 49 KVRELREKAQELREERD---EINEEVQEL--------KEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIE 117 (294)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Confidence 33333334444444443 356677654 677888888888888888877653 5567899999999
Q ss_pred HHHHHHhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH----HHHHhhHHHHHHHH
Q 003812 156 DMELLVRSKDRVLEED---EQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAF----IELVSNQRQLEAEL 228 (793)
Q Consensus 156 E~E~l~~~kdka~Eee---~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~----lEl~s~QrqlEaeL 228 (793)
..++..+-...-.+.+ .++-.+|...|-.+.++-+. .+.. .|+..-+.++++....| -+|+.-=.+.=.+|
T Consensus 118 ~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~-~~~~-~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 118 RLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEE-NEKL-KELKAEIDELKKKAREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886555555555 33445666666666554321 1111 22222244444333333 34444444555789
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 003812 229 GRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLR 282 (793)
Q Consensus 229 ~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLr 282 (793)
..+....|-.+.+.+.+-+.-.+....+..+..++.-++.++.+=++.|.++..
T Consensus 196 ~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 196 IKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987654
No 16
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.65 E-value=11 Score=44.99 Aligned_cols=170 Identities=18% Similarity=0.272 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 003812 124 QLRQQIGALINELRILDKKKDESISELNEKLK---DMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE---NAK 197 (793)
Q Consensus 124 rLr~qI~al~~E~~~le~~k~~~i~EL~~kLk---E~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE---~ak 197 (793)
+|.+.|..|+.|+...|..- .||+-+|. .-|..+. -.+..-+++..+|+.|+..+...-..=|. ++.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E----~ELRsqis~l~~~Er~lk---~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSE----QELRSQISSLTNNERSLK---SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhH----HHHHHHHhhccccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888766322 23333322 2222222 33444455566666666665554433332 222
Q ss_pred HHHHHhhHHHHhhHHHHH-HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHH
Q 003812 198 QEAQEHSNEIRKHKTAFI-ELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKI 276 (793)
Q Consensus 198 rEaqehS~dl~Khk~a~l-El~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDki 276 (793)
+-+.+ -.+.|..-++-| |.+++.++-|+--+++...-.+.+.|-....-+ =.+.|-.|+-+||.|+-.||.-
T Consensus 495 krL~e-E~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~------r~~~lE~E~~~lr~elk~kee~ 567 (697)
T PF09726_consen 495 KRLAE-ERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQ------RRRQLESELKKLRRELKQKEEQ 567 (697)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 111111112223 444444444443333332223333333322222 2357779999999999999998
Q ss_pred HHHHHhhc-------cCChHHHHHHHHHHHHHHHHHHH
Q 003812 277 LSAMLRKS-------KSDTAEKQMLLKEVKISKAKRRQ 307 (793)
Q Consensus 277 lSaMLrkS-------klD~~EKemLlrEvk~~kAkrK~ 307 (793)
+..|=..- +=+..|-|+|+-.|...+.|--+
T Consensus 568 ~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~ 605 (697)
T PF09726_consen 568 IRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQH 605 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 88775432 22344677777777776665544
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.60 E-value=35 Score=42.68 Aligned_cols=73 Identities=33% Similarity=0.408 Sum_probs=38.4
Q ss_pred hhHHHHHHHhccchhhHHHHHHH-------hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHH
Q 003812 412 LELEAFAEQMRMKDEKLEGYRWR-------LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQF 484 (793)
Q Consensus 412 ~EIeAF~eQmRlKDEKLEaFRwr-------llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql 484 (793)
.++..+..++.-..-.++..+++ +-..+.+.+++++++..+...+..+..+...+..=+..-+.++.++.++.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 695 NELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455444444444444444 33444555566666666666655555555445555555555565555554
No 18
>PRK02224 chromosome segregation protein; Provisional
Probab=92.52 E-value=28 Score=41.40 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhch-------hhHHHHHhhHHHHHHHHHHHHH
Q 003812 426 EKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNM-------KLEALLFEREEELHSLKEQFIS 486 (793)
Q Consensus 426 EKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~-------~lEall~~Re~El~sLk~ql~~ 486 (793)
+++..++-++-+++.++.++. .+..+..++..+..+-. .++.....-.+++..+..++..
T Consensus 572 ~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~ 638 (880)
T PRK02224 572 EEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666665 45555555444433333 3333333333444444444443
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.38 E-value=40 Score=42.74 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=53.9
Q ss_pred hccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhh------HHHHHHHHHHHHHhh
Q 003812 421 MRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFER------EEELHSLKEQFISQL 488 (793)
Q Consensus 421 mRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~R------e~El~sLk~ql~~~~ 488 (793)
-++++..+..++-++-.++.++..+.+.++.+...+..+.++.-.+++|+-.= ..++..|+.++...-
T Consensus 739 ~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~ 812 (1311)
T TIGR00606 739 IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQA 812 (1311)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888999999999999999999999999998888888764433 567777887776654
No 20
>PRK12704 phosphodiesterase; Provisional
Probab=91.79 E-value=30 Score=40.10 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=10.0
Q ss_pred hhhhhhhHHHHHHHHhhc
Q 003812 267 RKDLDQKDKILSAMLRKS 284 (793)
Q Consensus 267 Rkd~e~KDkilSaMLrkS 284 (793)
.-+-.-|+-|..||=|=+
T Consensus 185 ~a~~~a~~i~~~a~qr~a 202 (520)
T PRK12704 185 EADKKAKEILAQAIQRCA 202 (520)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 334445556666665555
No 21
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.63 E-value=38 Score=39.21 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=8.2
Q ss_pred hhhhhHHHHHHHHhhc
Q 003812 269 DLDQKDKILSAMLRKS 284 (793)
Q Consensus 269 d~e~KDkilSaMLrkS 284 (793)
+-.-|+-|..||=|=+
T Consensus 181 ~~~a~~i~~~aiqr~a 196 (514)
T TIGR03319 181 DKKAKEILATAIQRYA 196 (514)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3344555566665544
No 22
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=89.79 E-value=26 Score=35.89 Aligned_cols=102 Identities=21% Similarity=0.302 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003812 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVL 246 (793)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~ 246 (793)
++.+....+.+.+|..+..-+.++.+.++.++..--.++. -+.++--.+..++.++|.+-..|..++..-=..|
T Consensus 96 ~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~l---- 171 (205)
T PRK06231 96 QQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVEL---- 171 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444445566666666666666666666666654322221 1222223444555555555555555543322222
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 003812 247 EQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (793)
Q Consensus 247 e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (793)
+..+|.++..+-. |-++-+++|..++++
T Consensus 172 -----Av~iA~kiL~k~l----d~~~~~~lI~~~i~~ 199 (205)
T PRK06231 172 -----AMLAAEELIKKKV----DREDDDKLVDEFIRE 199 (205)
T ss_pred -----HHHHHHHHHHhhC----CHHHHHHHHHHHHHH
Confidence 3444555443321 334446777777754
No 23
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=89.56 E-value=26 Score=35.55 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 116 QSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELREN 195 (793)
Q Consensus 116 qsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~ 195 (793)
.-|+.-|..+-+++..-.+++..++.+ +..-++.|......+..+...++.....-......|...+.-...+...
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~r----l~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~ 135 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKR----LQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEE 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666555555554432 2222222222222222222222222222233333344444444455555
Q ss_pred HHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003812 196 AKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQV 235 (793)
Q Consensus 196 akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (793)
...+|.+ ++-|..+.+--+=|..-..++..+.+..+++.
T Consensus 136 ~~~~Le~-iAglT~eEAk~~Ll~~le~e~~~e~a~~ir~~ 174 (201)
T PF12072_consen 136 QQQELEE-IAGLTAEEAKEILLEKLEEEARREAAALIRRI 174 (201)
T ss_pred HHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 44554444433333333444445555444443
No 24
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=88.59 E-value=24 Score=34.00 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
...++......+.+.+|..+..-+.++++.++.+++....++. -+.++--.+..++.+++.+-.+|..++..-=.
T Consensus 50 ~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~--- 126 (159)
T PRK13461 50 EDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAV--- 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4444556666778888888888888888888888877554443 22222223444444444444444444432222
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 003812 244 LVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (793)
Q Consensus 244 sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS 284 (793)
+-+..+|.++...-. +-++-+++|...+.+.
T Consensus 127 ------~lA~~~a~kil~~~~----~~~~~~~li~~~i~~~ 157 (159)
T PRK13461 127 ------DLAVLLSSKALEESI----DESEHRRLIKDFISKV 157 (159)
T ss_pred ------HHHHHHHHHHHHhHc----CHHHHHHHHHHHHhHc
Confidence 223444444433222 3344456666666554
No 25
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=88.51 E-value=28 Score=34.58 Aligned_cols=105 Identities=16% Similarity=0.073 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 003812 167 VLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDL 244 (793)
Q Consensus 167 a~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~s 244 (793)
..++......+.+.+|..+...+.++.+.++.+++.....+. -+.++--.+..++.+++.+-.+|..++..-=.
T Consensus 70 ~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~---- 145 (184)
T CHL00019 70 RREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVF---- 145 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 334555566677778888888888888888777766444332 22222224444444555555555444432222
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 003812 245 VLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (793)
Q Consensus 245 v~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS 284 (793)
+-++.+|.++..+.. +.++-+++|...+.+.
T Consensus 146 -----~lav~~A~kil~~~l----d~~~~~~lid~~i~~l 176 (184)
T CHL00019 146 -----QLALQRALGTLNSCL----NNELHLRTINANIGLL 176 (184)
T ss_pred -----HHHHHHHHHHHHhHc----CHHHHHHHHHHHHHHH
Confidence 223444444433322 3334456666666543
No 26
>PRK00106 hypothetical protein; Provisional
Probab=87.97 E-value=63 Score=38.04 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 003812 618 YKLKRLKQQLLMLERFTGK 636 (793)
Q Consensus 618 yKiKrLkQqll~LErl~g~ 636 (793)
.=||||++ ||+++..
T Consensus 455 ~~i~rl~~----lE~ia~~ 469 (535)
T PRK00106 455 NYIKRLRD----LEEIANS 469 (535)
T ss_pred HHHHHHHH----HHHHHhc
Confidence 34788775 7888544
No 27
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.54 E-value=50 Score=41.36 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 003812 121 ERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENA---- 196 (793)
Q Consensus 121 ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~a---- 196 (793)
+=|+|-+|=.-|++-++.||.-.-.+--+-++.-+|+|..- .++++-++-..-|..++..+|.+..+|+|.-
T Consensus 369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~----sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl 444 (1243)
T KOG0971|consen 369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKN----SELEELRRQKERLSRELDQAESTIADLKEQVDAAL 444 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45777777777888887777522221122222222222221 2233333333445555555555555555511
Q ss_pred H-------------------HHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHH
Q 003812 197 K-------------------QEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQ 257 (793)
Q Consensus 197 k-------------------rEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~q 257 (793)
+ +.+-+-+.||..-++.==.|..+++|+|-+|. +++|-++.....+.-+++.....+-
T Consensus 445 GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLr---eEld~~~g~~kel~~r~~aaqet~y 521 (1243)
T KOG0971|consen 445 GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLR---EELDMAKGARKELQKRVEAAQETVY 521 (1243)
T ss_pred cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1 23334444444333333478888999998886 5666667777777778888888888
Q ss_pred HHHHHHHHHhhhh--------hhhHHHHHH
Q 003812 258 KLSLEIVKMRKDL--------DQKDKILSA 279 (793)
Q Consensus 258 kLs~El~klRkd~--------e~KDkilSa 279 (793)
++.-=|.|+|.-. +.+|...|.
T Consensus 522 DrdqTI~KfRelva~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 522 DRDQTIKKFRELVAHLQDQLQELTDQQESS 551 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8888888887543 345655554
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.35 E-value=95 Score=39.43 Aligned_cols=211 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHH----------------------HHHHHHHHH
Q 003812 123 KQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEED----------------------EQKRKELEE 180 (793)
Q Consensus 123 KrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee----------------------~~k~kelee 180 (793)
..+...|.+..+....+=..+++.|..+++++++.+.+. ..+++- ++..+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~----~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~ 288 (1074)
T KOG0250|consen 213 TESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKL----DNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEE 288 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH---hhHHHHH-HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHH
Q 003812 181 KISIAEKIAEELRENAKQEAQEHSNEIR---KHKTAFI-ELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFA 256 (793)
Q Consensus 181 kLa~aEk~~~eLrE~akrEaqehS~dl~---Khk~a~l-El~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~ 256 (793)
+....+..+..|-+......+. ..+++ +..+|-+ +++-..-.--.|+..|...+++.+.+...+-+..-++-.=.
T Consensus 289 ~i~~~qek~~~l~~ki~~~~~k-~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i 367 (1074)
T KOG0250|consen 289 EIKKKQEKVDTLQEKIEEKQGK-IEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSI 367 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhhh-hhhhchhhhhhhh
Q 003812 257 QKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEK-QMLLKEVKISKAKRRQAELETERWKAASQS-RHERHSLRSMFVS 334 (793)
Q Consensus 257 qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EK-emLlrEvk~~kAkrK~AE~E~erWkrlaE~-rher~slrSm~~~ 334 (793)
+++-.++..++|.+.+=.+-..--|..-...++.| ++|-+||.-..--...=..|...-+.-+.+ .++....+++...
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred hhhh
Q 003812 335 QANS 338 (793)
Q Consensus 335 ~~~s 338 (793)
...+
T Consensus 448 l~k~ 451 (1074)
T KOG0250|consen 448 LRKK 451 (1074)
T ss_pred HHHH
No 29
>PRK11637 AmiB activator; Provisional
Probab=87.05 E-value=55 Score=36.37 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=5.7
Q ss_pred HHHHhhhhhhhHHHH
Q 003812 263 IVKMRKDLDQKDKIL 277 (793)
Q Consensus 263 l~klRkd~e~KDkil 277 (793)
+..|.++.......|
T Consensus 221 l~~L~~~~~~~~~~l 235 (428)
T PRK11637 221 LTGLESSLQKDQQQL 235 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 30
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=86.93 E-value=98 Score=39.18 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhh
Q 003812 402 YAAVIEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLR 460 (793)
Q Consensus 402 ya~~Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~ 460 (793)
....| ..|..+.++.+.++..-..+++..+-.+-....++++.+..++.|+.+..+++
T Consensus 612 ~~~~l-~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 669 (1201)
T PF12128_consen 612 AEDQL-QSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLK 669 (1201)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444 34666678888888888888888887777777777777777666666555443
No 31
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=86.91 E-value=31 Score=33.43 Aligned_cols=70 Identities=26% Similarity=0.230 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003812 168 LEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEA 237 (793)
Q Consensus 168 ~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a 237 (793)
.++......+.+.+|+.+..-+.++.+.++.+++....++. .+.++--.+..++.+++.+-.+|..++..
T Consensus 69 ~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~ 140 (156)
T CHL00118 69 LAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEE 140 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888888888888888888777665553 23333335555566666666655555543
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.40 E-value=46 Score=34.83 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=44.0
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHH
Q 003812 78 KLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQE---QSWFSERKQLRQQIGALINELRILDKKKDESISELNEKL 154 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAshe---qsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kL 154 (793)
.|..-+..+..++.++|.+-.+-...+..+-.=+.+-+ ..=...|-.|..+|..|.+|+..+...++..+.+|..++
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 34444555555555554433333333322221111111 112234667888899999999998888888888888877
Q ss_pred H
Q 003812 155 K 155 (793)
Q Consensus 155 k 155 (793)
.
T Consensus 152 ~ 152 (312)
T PF00038_consen 152 Q 152 (312)
T ss_dssp -
T ss_pred c
Confidence 6
No 33
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.30 E-value=98 Score=41.29 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=129.6
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 003812 105 EKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISI 184 (793)
Q Consensus 105 eKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~ 184 (793)
.|.+.+|-+.-..|..+..-|.+-|..+.+=+-. -..++.+..+.|++.+.... +..+.-..++..++.-|..
T Consensus 283 ~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled----~~~~~~e~~d~l~e~~~sl~---~~~~~~~k~~~~le~~l~~ 355 (1822)
T KOG4674|consen 283 KKLNELWKSKLEELSHEVAELQRAIEELEKLLED----ASERNKENTDQLKELEQSLS---KLNEKLEKKVSRLEGELED 355 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999998888888766543333 44567777888888887775 4555555667666666655
Q ss_pred HHHHHHHHHH-HHHHHHHHhhHHHHhhHHHHH------------------HHHhh----------HHHHHHHHHHHHHHH
Q 003812 185 AEKIAEELRE-NAKQEAQEHSNEIRKHKTAFI------------------ELVSN----------QRQLEAELGRAHRQV 235 (793)
Q Consensus 185 aEk~~~eLrE-~akrEaqehS~dl~Khk~a~l------------------El~s~----------QrqlEaeL~rA~~~l 235 (793)
+..-...-.+ .+--+....++++.+-.--+. |+... =.+.+-.|.+++..+
T Consensus 356 an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~ 435 (1822)
T KOG4674|consen 356 ANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSEL 435 (1822)
T ss_pred hhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5544433111 111110122333322222221 22111 122336677788888
Q ss_pred HHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHH
Q 003812 236 EARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELET 312 (793)
Q Consensus 236 ~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~ 312 (793)
+.+...+-+++...+.++-=.+++-.++..+++.+.+.-.-+-.|.---.-=..+..+|+.|+..++...+++.-..
T Consensus 436 e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~ 512 (1822)
T KOG4674|consen 436 ERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSD 512 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc
Confidence 88888888888888888877778888888888887777776666655544445667789999999999998876544
No 34
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=86.11 E-value=36 Score=33.43 Aligned_cols=99 Identities=23% Similarity=0.307 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh--hHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 003812 172 EQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRK--HKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQK 249 (793)
Q Consensus 172 ~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~K--hk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~k 249 (793)
.....+.+.+|..++.-+.++.+.++.++.....++.. +.++--.+..++.+++.+-.+|..++..-=..+
T Consensus 69 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~l------- 141 (175)
T PRK14472 69 EAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADL------- 141 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 33344455556666666666666666555554444321 122222445555556666666655553332222
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 003812 250 EESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (793)
Q Consensus 250 ee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (793)
+..+|.++...-. +.++-+++|..++++
T Consensus 142 --A~~~a~kil~~~l----~~~~~~~li~~~i~~ 169 (175)
T PRK14472 142 --AVKGAEKIIRTSL----DADKQKKVVDSMIQD 169 (175)
T ss_pred --HHHHHHHHHHHHC----CHHHHHHHHHHHHHH
Confidence 3444444433322 334445666666644
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=86.04 E-value=85 Score=37.60 Aligned_cols=12 Identities=17% Similarity=0.291 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 003812 620 LKRLKQQLLMLE 631 (793)
Q Consensus 620 iKrLkQqll~LE 631 (793)
|..|.+++-.|+
T Consensus 672 ~~~l~~e~~~l~ 683 (1179)
T TIGR02168 672 ILERRREIEELE 683 (1179)
T ss_pred hhhHHHHHHHHH
Confidence 344444444443
No 36
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=85.59 E-value=39 Score=33.26 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003812 170 EDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLE 247 (793)
Q Consensus 170 ee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e 247 (793)
+......+.+.+|..+..-+.++.+.++.++.....++. -++++--.+.+++.+++.+-.+|..++..-=..|
T Consensus 65 eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~l----- 139 (173)
T PRK13460 65 EAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEM----- 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344445566777777777777777777777776555553 3334444566666677777666666664332222
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 003812 248 QKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (793)
Q Consensus 248 ~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (793)
++.+|.++...-. +.++-+++|...+.+
T Consensus 140 ----A~~~a~kil~~~l----~~~~~~~lid~~i~~ 167 (173)
T PRK13460 140 ----TITIASKVLEKQL----KKEDYKAFIETELAK 167 (173)
T ss_pred ----HHHHHHHHHHHHC----CHHHHHHHHHHHHHH
Confidence 3444444443322 334445666666654
No 37
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=85.43 E-value=40 Score=33.29 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh--hHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003812 168 LEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRK--HKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLV 245 (793)
Q Consensus 168 ~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~K--hk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv 245 (793)
.++......+.+.+|..+..-+.++.+.++.++.....++.. +.++--.+..++.+++.+-..|..++..--.++
T Consensus 65 ~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~l--- 141 (173)
T PRK13453 65 KLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSEL--- 141 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344455556777778888888888888777777665544431 222222344555555555555555553332222
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 003812 246 LEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (793)
Q Consensus 246 ~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS 284 (793)
+..+|.++...-. +.++-+++|..+|.+.
T Consensus 142 ------A~~~a~kll~~~l----~~~~~~~lI~~~i~~~ 170 (173)
T PRK13453 142 ------SVLIASKVLRKEI----SEQDQKALVDKYLKEA 170 (173)
T ss_pred ------HHHHHHHHHHhHc----CHHHHHHHHHHHHHhh
Confidence 3344444432211 3344567777777654
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=85.04 E-value=1.2e+02 Score=38.32 Aligned_cols=59 Identities=34% Similarity=0.355 Sum_probs=39.8
Q ss_pred HHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHh
Q 003812 414 LEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFE 472 (793)
Q Consensus 414 IeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~ 472 (793)
++.+..++--..+.++..+-++-.++.+..++++.+..++..+..++.....+++....
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444445566666667777777777777777777777777777777777766554
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.79 E-value=93 Score=36.94 Aligned_cols=97 Identities=20% Similarity=0.354 Sum_probs=71.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhh
Q 003812 387 DGKRLEGWVRLEAEKYAAVIEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKL 466 (793)
Q Consensus 387 ~~~~le~W~~~e~erya~~Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~l 466 (793)
+-++++.|++..-..--+..+.-+-..=.+=+|.++++. .+..+|-+|-.+|..-.-|-..|++|+..+ ..+.-.-
T Consensus 265 nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~-~i~~Lr~klselE~~n~~L~~~I~dL~~ql---~e~~r~~ 340 (546)
T KOG0977|consen 265 NRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRS-RISGLRAKLSELESRNSALEKRIEDLEYQL---DEDQRSF 340 (546)
T ss_pred hHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHh-cccchhhhhccccccChhHHHHHHHHHhhh---hhhhhhh
Confidence 556788888875444433333333333344566666664 689999999999999999999999998654 4566778
Q ss_pred HHHHHhhHHHHHHHHHHHHHh
Q 003812 467 EALLFEREEELHSLKEQFISQ 487 (793)
Q Consensus 467 Eall~~Re~El~sLk~ql~~~ 487 (793)
|+.|.+++.++.-+.++...+
T Consensus 341 e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 341 EQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999988886555
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=84.37 E-value=1.1e+02 Score=37.56 Aligned_cols=171 Identities=27% Similarity=0.399 Sum_probs=109.3
Q ss_pred hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003812 142 KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRK-------------ELEEKISIAEKIAEELRENAKQEAQEHSNEIR 208 (793)
Q Consensus 142 ~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~k-------------eleekLa~aEk~~~eLrE~akrEaqehS~dl~ 208 (793)
+++..|..|..++.-++..+..+|+.+.....+.. .|++=+..-+++.+.|++.-.+.-++...++.
T Consensus 389 ~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele 468 (775)
T PF10174_consen 389 KKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELE 468 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888888888777777776654443 45555556666666665543344456666777
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccC--
Q 003812 209 KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKS-- 286 (793)
Q Consensus 209 Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSkl-- 286 (793)
+|+.-+-++...-..|+.+|.-.--+|+.++.+.-++...-+...+-+..|--++.+.+-+.+ ++.+.+-+ ++.
T Consensus 469 ~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~---kl~~ql~k-~~~~~ 544 (775)
T PF10174_consen 469 TYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHE---KLEKQLEK-LRANA 544 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHH---HHHHHHHH-HHhCH
Confidence 888888777777778888888888888888888888888888777777666666666555554 23333322 111
Q ss_pred C-hHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003812 287 D-TAEKQMLLKEVKISKAKRRQAELETERWK 316 (793)
Q Consensus 287 D-~~EKemLlrEvk~~kAkrK~AE~E~erWk 316 (793)
+ +..=.+|-++|...+..--.+-.|.||-.
T Consensus 545 e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl 575 (775)
T PF10174_consen 545 ELRDRIQQLEQEVTRYREESEKAQAEVERLL 575 (775)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11223555666665544444444555544
No 41
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.24 E-value=1.3e+02 Score=38.17 Aligned_cols=84 Identities=18% Similarity=0.350 Sum_probs=48.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 115 EQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE 194 (793)
Q Consensus 115 eqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE 194 (793)
.+.|......|++++..+...+..+.+. .+++++.|+....-+.....++....+..+....++..+......++.
T Consensus 595 ~pd~~~~ee~L~~~l~~~~~~l~~~~~~----~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 670 (1201)
T PF12128_consen 595 VPDYAASEEELRERLEQAEDQLQSAEER----QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQ 670 (1201)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3458888889999999888887775533 455555555544444433344444455555555555555555544444
Q ss_pred HHHHHHHH
Q 003812 195 NAKQEAQE 202 (793)
Q Consensus 195 ~akrEaqe 202 (793)
..+++..+
T Consensus 671 ~~~~~~~~ 678 (1201)
T PF12128_consen 671 EIEEAKEE 678 (1201)
T ss_pred HHHHHHHH
Confidence 44433333
No 42
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=84.14 E-value=39 Score=32.10 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
...++.+....+.+.+|..+..-+.++++.++.+++....++. .+.++--....++.+++.+-..|..++..--.+
T Consensus 49 ~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~-- 126 (156)
T PRK05759 49 RAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVAD-- 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4445556667788888888888888888888877777554443 223333344444555555555444444333222
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 003812 244 LVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLR 282 (793)
Q Consensus 244 sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLr 282 (793)
-+..+|.++...-. |.+.-.++|...|.
T Consensus 127 -------lA~~~a~k~l~~~~----d~~~~~~~i~~~i~ 154 (156)
T PRK05759 127 -------LAVAGAEKILGREL----DAAAQSDLIDKLIA 154 (156)
T ss_pred -------HHHHHHHHHHHhHc----CHHHHHHHHHHHHh
Confidence 24555555554422 22333455555554
No 43
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.44 E-value=1.1e+02 Score=36.66 Aligned_cols=235 Identities=19% Similarity=0.283 Sum_probs=115.3
Q ss_pred hhhHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh----------hchh
Q 003812 76 KCKLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDK----------KKDE 145 (793)
Q Consensus 76 ~~~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~----------~k~~ 145 (793)
+....+++...|..|.+|+.--.+-..-+. ..-...-++.+..|=..|+.+++.|...+...-. .++.
T Consensus 45 k~~~~~~V~eLE~sL~eLk~q~~~~~~~~~--pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEe 122 (617)
T PF15070_consen 45 KEHDISRVQELERSLSELKNQMAEPPPPEP--PAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEE 122 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888776655543332 1233344567777777777777777766554322 1223
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEEDEQ----------KRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI 215 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~----------k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l 215 (793)
++.+|++.+.+.+.-.....+-++.-+. --++|.+.|+.++..-+.|. .-|-|+.. +-....|.. -
T Consensus 123 rL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt-ne~~elt~-~lq~Eq~~~--k 198 (617)
T PF15070_consen 123 RLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT-NENMELTS-ALQSEQHVK--K 198 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH-HhhhHhhH-HHHHHHHHH--H
Confidence 3333333333333222211111111100 01344444444444333331 11222222 111112211 1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCh
Q 003812 216 ELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEES-------VSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDT 288 (793)
Q Consensus 216 El~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~-------~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~ 288 (793)
||..+--+++..|+.-...+..+..|+.++..+.+.. ++-.+.|..|-..|.+.+-+---.+..+=..=.=.+
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~ 278 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGK 278 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4444445666677777777777777787777776652 233456677766666665443333222211111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003812 289 AEKQMLLKEVKISKAKRRQAELETERWK 316 (793)
Q Consensus 289 ~EKemLlrEvk~~kAkrK~AE~E~erWk 316 (793)
..-++..+||..+++.=..+..+-+.-+
T Consensus 279 ~~~E~~~~ELq~~qe~Lea~~qqNqqL~ 306 (617)
T PF15070_consen 279 VQLEMAHQELQEAQEHLEALSQQNQQLQ 306 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3336677777777666555555444443
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.28 E-value=69 Score=34.29 Aligned_cols=112 Identities=25% Similarity=0.297 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 003812 125 LRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAK--QEAQE 202 (793)
Q Consensus 125 Lr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~ak--rEaqe 202 (793)
....|..+-.++..++.+....-.+|.++..+++.+- +.+++-+..-..++......+....++|++.+ ++.+-
T Consensus 8 ~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~----~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~ 83 (239)
T COG1579 8 SLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALN----KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS 83 (239)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666655566666666666666554 33444444444444444444444444444332 12221
Q ss_pred hhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 003812 203 HSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEE 251 (793)
Q Consensus 203 hS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee 251 (793)
-. -.. .-.+.|..++..|-++..+.+.+|.-++....+
T Consensus 84 ~v---~~~--------~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 84 AV---KDE--------RELRALNIEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred cc---ccH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 000 112345567777777777777777654444443
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.03 E-value=86 Score=35.22 Aligned_cols=12 Identities=17% Similarity=0.280 Sum_probs=7.5
Q ss_pred CchhhHHHHHHH
Q 003812 42 DDKWSELHDKML 53 (793)
Q Consensus 42 d~k~~~~lq~ML 53 (793)
+..|.+++..++
T Consensus 149 ~~er~~il~~l~ 160 (562)
T PHA02562 149 APARRKLVEDLL 160 (562)
T ss_pred hHhHHHHHHHHh
Confidence 345677777755
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.98 E-value=65 Score=33.74 Aligned_cols=62 Identities=27% Similarity=0.390 Sum_probs=45.1
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhc----hhhHHHHHhhHHHHHHHHHHHHHhhh
Q 003812 428 LEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDN----MKLEALLFEREEELHSLKEQFISQLK 489 (793)
Q Consensus 428 LEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~----~~lEall~~Re~El~sLk~ql~~~~~ 489 (793)
+-..|-++=++..++..|++....|...+..+.+.. ..+.+.+..++.|+..++.++..++.
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 455666667777777777777777777777665433 34677888889999999998887764
No 47
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.94 E-value=70 Score=34.08 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=12.6
Q ss_pred hhHHhHHHHHHHHHHHHHHh
Q 003812 77 CKLSQKLDAAEREIEELKKL 96 (793)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkr 96 (793)
..+..++..++.++..++..
T Consensus 77 ~~~~~~l~~l~~~~~~l~a~ 96 (423)
T TIGR01843 77 TDVEADAAELESQVLRLEAE 96 (423)
T ss_pred chhhhHHHHHHHHHHHHHHH
Confidence 34556777777777766544
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.62 E-value=1.6e+02 Score=38.02 Aligned_cols=152 Identities=21% Similarity=0.282 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh----------chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003812 118 WFSERKQLRQQIGALINELRILDKK----------KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEK 187 (793)
Q Consensus 118 W~~ErKrLr~qI~al~~E~~~le~~----------k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk 187 (793)
-....|++.+.|.-|.+++...+.. ....|.+|+..+..++.+.. +.+++|.+.+....+
T Consensus 403 ~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~----------~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 403 REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE----------KEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh
Confidence 3445677777777777777665542 33355555555554444443 333555555555555
Q ss_pred HHHHHHHHHH---HHHHHhhHHHHhhHHHHHHHHhhHHHHH---HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHH
Q 003812 188 IAEELRENAK---QEAQEHSNEIRKHKTAFIELVSNQRQLE---AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSL 261 (793)
Q Consensus 188 ~~~eLrE~ak---rEaqehS~dl~Khk~a~lEl~s~QrqlE---aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~ 261 (793)
-.+-+++... .++.--+.++ -++-.|+.-++-+|+ -....+.+.+++.+.-|.+.++-..+-...+-++-.
T Consensus 473 ~t~~~~~e~~~~ekel~~~~~~~---n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~ 549 (1293)
T KOG0996|consen 473 ETEGIREEIEKLEKELMPLLKQV---NEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKE 549 (1293)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443221 1111111111 111123344444444 334567788888888888888888888888888888
Q ss_pred HHHHHhhhhhhhHHHHHHHHh
Q 003812 262 EIVKMRKDLDQKDKILSAMLR 282 (793)
Q Consensus 262 El~klRkd~e~KDkilSaMLr 282 (793)
+|..+..++.++.+-|-.+..
T Consensus 550 ~l~~~k~e~~~~~k~l~~~~~ 570 (1293)
T KOG0996|consen 550 ELPSLKQELKEKEKELPKLRK 570 (1293)
T ss_pred hhhhHHHHHHHHHHhHHHHHH
Confidence 888888888888777766654
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.61 E-value=1.1e+02 Score=36.27 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHH
Q 003812 226 AELGRAHRQVEARKEELDLVLEQK-----------EESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQML 294 (793)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~k-----------ee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemL 294 (793)
..|..+..+....+.||.++...+ .+...++..|+.....||..--+++....++..-+..+.++-+.|
T Consensus 297 e~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L 376 (546)
T PF07888_consen 297 EQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKL 376 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333334444444444554444443 244555666777777777777788888777776666676666666
Q ss_pred HHHHH
Q 003812 295 LKEVK 299 (793)
Q Consensus 295 lrEvk 299 (793)
-+|+-
T Consensus 377 ~~el~ 381 (546)
T PF07888_consen 377 SRELQ 381 (546)
T ss_pred HHHHH
Confidence 66653
No 50
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=81.89 E-value=66 Score=33.12 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003812 170 EDEQKRKELEEKISIAEKIAEELRENAKQEAQEHS 204 (793)
Q Consensus 170 ee~~k~keleekLa~aEk~~~eLrE~akrEaqehS 204 (793)
+.+....+.+.+|+.+..-+.++.+.++.+++...
T Consensus 102 eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~ 136 (204)
T PRK09174 102 EADAAVAAYEQELAQARAKAHSIAQAAREAAKAKA 136 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666777777777777777766666544
No 51
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=81.21 E-value=55 Score=31.74 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003812 168 LEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLV 245 (793)
Q Consensus 168 ~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv 245 (793)
.++......+.+.+|+.+..-+.++.+.++.++.....++. -+.++--.+..++.+++.+-.+|..++..-=..
T Consensus 55 ~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~---- 130 (164)
T PRK14471 55 RKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVAN---- 130 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34445555667777777777777777777777776555553 233344455566666666666665555332222
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHhhccC
Q 003812 246 LEQKEESVSFAQKLSLEIVKMRKDL---DQKDKILSAMLRKSKS 286 (793)
Q Consensus 246 ~e~kee~~~~~qkLs~El~klRkd~---e~KDkilSaMLrkSkl 286 (793)
-+..+|.++. .+.+ ++-+++|..++.+..+
T Consensus 131 -----la~~~a~kil------~~~l~~~~~~~~lid~~i~~~~~ 163 (164)
T PRK14471 131 -----LSVEIAEKVL------RKELSNKEKQHKLVEKMLGDVKL 163 (164)
T ss_pred -----HHHHHHHHHH------HHHcCcHhHHHHHHHHHHHhcCC
Confidence 2344444443 3333 2236788888877654
No 52
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=80.52 E-value=48 Score=34.77 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=41.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 143 KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENA 196 (793)
Q Consensus 143 k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~a 196 (793)
|-.+|+=|+.+|+|-..=+..|+-+|..-+...+++..++...+....+|+.++
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~ 61 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL 61 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455688888888887777777777777777778888888888888888887755
No 53
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.51 E-value=1.4e+02 Score=35.88 Aligned_cols=100 Identities=28% Similarity=0.398 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---chhhHHHHHHHHHHHHHHHhh
Q 003812 87 EREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK---KDESISELNEKLKDMELLVRS 163 (793)
Q Consensus 87 E~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~---k~~~i~EL~~kLkE~E~l~~~ 163 (793)
|.-|+-|+.-|.-|-| |+.-.| .++..|+|.|...|++|..++..-+.. -.++.+.|.-...-+..-+-+
T Consensus 312 er~IerLkeqr~rder--E~~EeI-----e~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~ 384 (654)
T KOG4809|consen 312 ERIIERLKEQRERDER--ERLEEI-----ESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKS 384 (654)
T ss_pred HHHHHHhcchhhhhHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 4556666655544443 455555 356789999999999998877664431 112333333333333333344
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 164 KDRVLEEDEQKRKELEEKISIAEKIAEELR 193 (793)
Q Consensus 164 kdka~Eee~~k~keleekLa~aEk~~~eLr 193 (793)
.|.++|.-..+|-.++..|.+|-+++.+-|
T Consensus 385 leIalEqkkEec~kme~qLkkAh~~~ddar 414 (654)
T KOG4809|consen 385 LEIALEQKKEECSKMEAQLKKAHNIEDDAR 414 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 556666777778888888888877776543
No 54
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=80.22 E-value=65 Score=31.95 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh--HHHHHHHHhhHHHHHHHHHHHHHHH
Q 003812 170 EDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKH--KTAFIELVSNQRQLEAELGRAHRQV 235 (793)
Q Consensus 170 ee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Kh--k~a~lEl~s~QrqlEaeL~rA~~~l 235 (793)
+......+.+.+|..+..-+.++.+.++.+++.-...+... .++--.+.+++.+++.+=.+|..++
T Consensus 76 eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l 143 (184)
T PRK13455 76 EAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAV 143 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666677777777777777766666543333211 1111233444444444444444443
No 55
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.26 E-value=48 Score=40.20 Aligned_cols=32 Identities=38% Similarity=0.468 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003812 172 EQKRKELEEKISIAEKIAEELRENAKQEAQEH 203 (793)
Q Consensus 172 ~~k~keleekLa~aEk~~~eLrE~akrEaqeh 203 (793)
++...+++.++...+.--..+.+.+++++++.
T Consensus 547 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~ 578 (782)
T PRK00409 547 EKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 56
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.00 E-value=41 Score=40.76 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=32.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003812 143 KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (793)
Q Consensus 143 k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (793)
-++-|.+|+++..+.|.......+...+.+...++++.++...++--.++.+.|++|+++...+.
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a 577 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL 577 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444333444444555555555555555555555555555555544333
No 57
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=78.44 E-value=68 Score=31.13 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVE 236 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~ 236 (793)
+..++......+.+.+|..+..-+.++.+.++.++.....++. .+.++--.+..++.+++.+-.+|..+|.
T Consensus 53 ~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~ 125 (164)
T PRK14473 53 KVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELK 125 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777888888888888888888877776544442 2333333455555555555555555553
No 58
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=78.32 E-value=72 Score=31.38 Aligned_cols=67 Identities=27% Similarity=0.264 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh--hHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003812 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRK--HKTAFIELVSNQRQLEAELGRAHRQV 235 (793)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~K--hk~a~lEl~s~QrqlEaeL~rA~~~l 235 (793)
++.+....+.+.+|+.+..-+.+++..++.+++.-..++.. +.++--.+..++.+++.+-..|..++
T Consensus 67 ~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l 135 (174)
T PRK07352 67 RQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQL 135 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777777777777777777666664444431 11222234444444444444444444
No 59
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=77.99 E-value=61 Score=30.36 Aligned_cols=71 Identities=24% Similarity=0.256 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVE 236 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~ 236 (793)
+..++......+.+.+|..+..-+.++++.++.++......+. .+.++--.+.+++.+++.+-..|..++.
T Consensus 50 ~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~ 122 (140)
T PRK07353 50 ERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLE 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666788888888888888888888887777555553 2333333445555555555555544443
No 60
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.58 E-value=1.5e+02 Score=34.66 Aligned_cols=132 Identities=21% Similarity=0.254 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----------------hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 003812 121 ERKQLRQQIGALINELRILDK-----------------KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKIS 183 (793)
Q Consensus 121 ErKrLr~qI~al~~E~~~le~-----------------~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa 183 (793)
+|-.+-.++..|...+..++. +-..++-.|+++++|+|.-+. ..+.++.+.++++..|+.
T Consensus 216 ~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElrae---E~l~Ee~rrhrEil~k~e 292 (502)
T KOG0982|consen 216 ERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAE---ESLSEEERRHREILIKKE 292 (502)
T ss_pred hhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHH
Confidence 444555555555555555553 234477889999999999998 889999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHH
Q 003812 184 IAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSL 261 (793)
Q Consensus 184 ~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~ 261 (793)
....+..|.=++--+-+.+-.++|| +.+-=|.++-..|+.+.-|...+|++.+--|. .--+.++-|.+.|+-
T Consensus 293 Reasle~Enlqmr~qqleeentelR---s~~arlksl~dklaee~qr~sd~LE~lrlql~---~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 293 REASLEKENLQMRDQQLEEENTELR---SLIARLKSLADKLAEEDQRSSDLLEALRLQLI---CEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 6655554442222233333233333 33334556666667777777777777765553 223344555555443
No 61
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.36 E-value=92 Score=33.00 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHH
Q 003812 225 EAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQM 293 (793)
Q Consensus 225 EaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKem 293 (793)
..+|.-...|+.+.+..+.+....+......++.+-.|+..|+-+++ ++...|+--+.+..-+-|+
T Consensus 52 ~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in---~~R~e~lgl~~Lp~l~eE~ 117 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN---ELRKEYLGLEPLPSLEEEE 117 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCCcccccc
Confidence 34444445555555566655556666666666666666666655543 2333344445554444333
No 62
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.03 E-value=2.4e+02 Score=36.62 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 003812 225 EAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAM 280 (793)
Q Consensus 225 EaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaM 280 (793)
+.++..+..++.++..++..+.+.... +++.|-.+|..+++.++.-.+-|..+
T Consensus 895 ~~e~~~~~~e~~~a~~~l~~l~e~l~~---~~eel~a~L~e~r~rL~~l~~el~~~ 947 (1353)
T TIGR02680 895 AEDAAEARAEAEEASLRLRTLEESVGA---MVDEIRARLAETRAALASGGRELPRL 947 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433221 25666666666766666655555443
No 63
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=74.79 E-value=6.8 Score=42.76 Aligned_cols=76 Identities=22% Similarity=0.276 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhcCC--C-----CCCCc---CCccchhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHhhhcCCCCCCC
Q 003812 620 LKRLKQQLLMLERFTGK--S-----GEDTE---SNDDGIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHETGPEISPE 689 (793)
Q Consensus 620 iKrLkQqll~LErl~g~--~-----~e~~~---~~~~~~r~~~~~~sll~Kqv~RYQsL~~KiDdLCkRm~~sd~~~~~~ 689 (793)
||||+.=---||.+++. + +.... ..+..+.+..-+=.||+..|+.|-.+..+||+...-
T Consensus 5 lkRLEaatsRLE~i~~~~~~~~~~~~~~~~~~~~~~~~p~sV~afD~~i~~~l~~f~~~S~~igg~V~~----------- 73 (312)
T PF01213_consen 5 LKRLEAATSRLEDIASSLQSSHRPSGTPSAPSAAVASVPPSVEAFDELINGPLKPFVELSKKIGGDVAE----------- 73 (312)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----------
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHH-----------
Confidence 79999999999999854 1 10000 111255667777788999999999999999987654
Q ss_pred CchhhhcccchhhHHHHHHHHHHHHHHHHH
Q 003812 690 DSSTAKRRGDTKTLEHFLEETFQLQRYIVS 719 (793)
Q Consensus 690 ~s~~~r~~~~t~~l~~FLeEtFqLQry~v~ 719 (793)
+.+++.++|+.||.+..
T Consensus 74 -------------~a~~v~~aF~~qr~~L~ 90 (312)
T PF01213_consen 74 -------------QAQLVKKAFQAQRKFLL 90 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHH
Confidence 45888999999987654
No 64
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=74.31 E-value=92 Score=30.59 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQV 235 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (793)
+...+......+.+.+|+.+..-+.++...++.+++.-..++. -+.++--.+..++.+++.+-.+|..++
T Consensus 55 ~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el 126 (167)
T PRK14475 55 RLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADV 126 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677777888888888888877777766444432 122222233444444555544444444
No 65
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=73.47 E-value=2.9e+02 Score=35.90 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=27.6
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhh
Q 003812 77 CKLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAA 113 (793)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAs 113 (793)
..+..+|...+..+..|+.....--.-|..+..+-+.
T Consensus 233 ~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~ 269 (1353)
T TIGR02680 233 DEYRDELERLEALERALRNFLQRYRRYARTMLRRRAT 269 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888777777656555443
No 66
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=73.46 E-value=83 Score=29.71 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh--HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003812 167 VLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKH--KTAFIELVSNQRQLEAELGRAHRQVE 236 (793)
Q Consensus 167 a~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Kh--k~a~lEl~s~QrqlEaeL~rA~~~l~ 236 (793)
..++......+.+.+|..+..-+.++++.++.++.....++... .++---+..++.+++.+-.+|..++.
T Consensus 41 ~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~ 112 (147)
T TIGR01144 41 AKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELR 112 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555567777788888888888777777776655444322 12222344455555555555555443
No 67
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=73.30 E-value=99 Score=30.51 Aligned_cols=71 Identities=28% Similarity=0.329 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 003812 172 EQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI--ELVSNQRQLEAELGRAHRQVEARKEEL 242 (793)
Q Consensus 172 ~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l--El~s~QrqlEaeL~rA~~~l~a~~~EL 242 (793)
+.-..+.+.+|..+..-+.++.+.|++++..-..++.++-+..+ -...++.+++.+..+|..+|...=.++
T Consensus 57 ~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~l 129 (161)
T COG0711 57 QALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAEL 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566667777777777777888777776766666555554 566677777777777777776554444
No 68
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=71.54 E-value=2.6e+02 Score=34.63 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=9.7
Q ss_pred hhHHhHHHHHHHHH
Q 003812 77 CKLSQKLDAAEREI 90 (793)
Q Consensus 77 ~~L~~kL~~AE~ei 90 (793)
....||++++|.-+
T Consensus 405 ~e~~QRva~lEkKv 418 (961)
T KOG4673|consen 405 EEYHQRVATLEKKV 418 (961)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677887777655
No 69
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=71.32 E-value=3.9e+02 Score=36.47 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=37.2
Q ss_pred HHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHH
Q 003812 414 LEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQ 483 (793)
Q Consensus 414 IeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~q 483 (793)
|.--..+..--.|.||+=|-..--+|-.-+-|...++.|+.++...-+......-+=..|+.|+..|+..
T Consensus 1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~ 1168 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRD 1168 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556666666666666666666666666666666665333333333333444444444433
No 70
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=70.17 E-value=1.2e+02 Score=30.32 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003812 170 EDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (793)
Q Consensus 170 ee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (793)
+.+....+.+.+|..+..-+.++.+.++.+++....++
T Consensus 80 eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~ 117 (181)
T PRK13454 80 KAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVA 117 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777777766666544333
No 71
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.44 E-value=3.2e+02 Score=34.85 Aligned_cols=204 Identities=23% Similarity=0.310 Sum_probs=97.7
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhH-----HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-------hhchh
Q 003812 78 KLSQKLDAAEREIEELKKLRHEDAKANEKV-----VGIFAAQEQSWFSERKQLRQQIGALINELRILD-------KKKDE 145 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKV-----v~IfAsheqsW~~ErKrLr~qI~al~~E~~~le-------~~k~~ 145 (793)
.|.--+....+.++-||-+|.||- +|| +.|---+=|-|++ ++-.++..|.++|-..+ ..+++
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk---~Kl~ElekmkiqleqlqEfkS---kim~qqa~Lqrel~raR~e~keaqe~ke~ 301 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDK---AKLKELEKMKIQLEQLQEFKS---KIMEQQADLQRELKRARKEAKEAQEAKER 301 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556777777888888898883 344 3455555566643 55555555555554443 33333
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhh
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEED-----EQKRKELEEKISIAEKIAEELREN----------------AKQEAQEHS 204 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee-----~~k~keleekLa~aEk~~~eLrE~----------------akrEaqehS 204 (793)
...++-+--.-+|.+-. ||++-|| +..-.-+.||+-.++-..+=||+. .+-|-|| .
T Consensus 302 ~k~emad~ad~iEmaTl--dKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN-~ 378 (1243)
T KOG0971|consen 302 YKEEMADTADAIEMATL--DKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQN-A 378 (1243)
T ss_pred HHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHH-H
Confidence 33333332233333332 3444444 333355556666665555444431 1122333 1
Q ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHH-----HH
Q 003812 205 NEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKIL-----SA 279 (793)
Q Consensus 205 ~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkil-----Sa 279 (793)
+-|+|++=|+----+--..--++.+.+++.++|+..+.-.+|.-+.=+..+-+=|+-|+ ||=|..+ =.
T Consensus 379 ----rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk---EQVDAAlGAE~MV~ 451 (1243)
T KOG0971|consen 379 ----RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK---EQVDAALGAEEMVE 451 (1243)
T ss_pred ----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcHHHHHH
Confidence 44555544432221222334466666666666666555555433332222222233222 2223322 13
Q ss_pred HHhhccCChHHHHHHHHH
Q 003812 280 MLRKSKSDTAEKQMLLKE 297 (793)
Q Consensus 280 MLrkSklD~~EKemLlrE 297 (793)
+|---++..+||=+||.|
T Consensus 452 qLtdknlnlEekVklLee 469 (1243)
T KOG0971|consen 452 QLTDKNLNLEEKVKLLEE 469 (1243)
T ss_pred HHHhhccCHHHHHHHHHH
Confidence 455556666666666653
No 72
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.03 E-value=1.6e+02 Score=31.14 Aligned_cols=61 Identities=44% Similarity=0.601 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (793)
.-.+|..+|..++.=......++.+...+-..|++++..++..+..| +.-..++.+....|
T Consensus 6 ~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~L-e~k~~eaee~~~rL 66 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEEL-EQKRQEAEEEKQRL 66 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566666666655554444555566666667777777777666655 33334444434333
No 73
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=68.07 E-value=1.3e+02 Score=29.79 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003812 171 DEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEA 237 (793)
Q Consensus 171 e~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a 237 (793)
......+.+.+|..+..-+.++.+.++.+++..-.++ +..++.+.+..+.+|...++.
T Consensus 72 a~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~i---------i~~A~~ea~~~~~~a~~~ie~ 129 (167)
T PRK08475 72 SKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKI---------EKQTKDDIENLIKSFEELMEF 129 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777888888777777776633222 234444445555555444443
No 74
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=67.52 E-value=1.2e+02 Score=29.25 Aligned_cols=37 Identities=32% Similarity=0.297 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003812 168 LEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHS 204 (793)
Q Consensus 168 ~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS 204 (793)
.++......+.+.+|..+..-+.++...++.+++.-.
T Consensus 49 ~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~ 85 (159)
T PRK09173 49 REEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEALT 85 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566667777777777777777766666533
No 75
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.55 E-value=1.9e+02 Score=31.10 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhhh---chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 124 QLRQQIGALINELRILDKK---KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEA 200 (793)
Q Consensus 124 rLr~qI~al~~E~~~le~~---k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEa 200 (793)
+|.+.++-..+++..+++. ..+.+.+++..+++++.-+-.-...+-+.+.+.+.++.+| .+-+...++ ..+++|.
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~-~aL~~E~ 98 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDEREL-RALNIEI 98 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHH-HHHHHHH
Confidence 3444444444444443332 2234444444444444444211133334455556667777 333444444 2334444
Q ss_pred HH
Q 003812 201 QE 202 (793)
Q Consensus 201 qe 202 (793)
+-
T Consensus 99 ~~ 100 (239)
T COG1579 99 QI 100 (239)
T ss_pred HH
Confidence 43
No 76
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.35 E-value=3.8e+02 Score=34.50 Aligned_cols=232 Identities=19% Similarity=0.293 Sum_probs=111.8
Q ss_pred hhHHhHHHHHHHHHHHHHHhh--hhhhhhhh--hH-------HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 003812 77 CKLSQKLDAAEREIEELKKLR--HEDAKANE--KV-------VGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDE 145 (793)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkrR--~EDAKANe--KV-------v~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~ 145 (793)
+.....|+.+|.||..|+.-- ..|-+++= +- -.+=.+-.+.-.++.+.++..|..+..+|-. +.+
T Consensus 687 ~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike----~~~ 762 (1174)
T KOG0933|consen 687 RAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKE----KER 762 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 445566788888888776421 12222210 00 0011122223334444444444444444433 455
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHhhHHHHH
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEE----------LRENAKQEAQEHSNEIRKHKTAFI 215 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~e----------LrE~akrEaqehS~dl~Khk~a~l 215 (793)
.+..+..+++-.|.-.. .+.-+-.++-++|+-.|..+..-+++ ..+++.-|.-+...++..++.-.-
T Consensus 763 ~~k~~~~~i~~lE~~~~---d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~ 839 (1174)
T KOG0933|consen 763 ALKKCEDKISTLEKKMK---DAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLE 839 (1174)
T ss_pred HHHHHHHHHHHHHHHHh---HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555443 11111222223443333333322222 123444444555566667777766
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHH
Q 003812 216 ELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLL 295 (793)
Q Consensus 216 El~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLl 295 (793)
.+..+...|+.+++.....++....+++.+...-.+...+-..+..||..+=. ..++ ++.+-..-.-+++.|-
T Consensus 840 ~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~---~~e~----~~~e~~~~~l~~kkle 912 (1174)
T KOG0933|consen 840 QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLT---SQEK----CLSEKSDGELERKKLE 912 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh---HHHH----HHHHhhcccchHHHHH
Confidence 77777778888888777777777777764444333333333333333322211 1222 2222233344667777
Q ss_pred HHHHHHHHHHHHhHHHH----HHHHHhhhhh
Q 003812 296 KEVKISKAKRRQAELET----ERWKAASQSR 322 (793)
Q Consensus 296 rEvk~~kAkrK~AE~E~----erWkrlaE~r 322 (793)
.||..-+...+-+..+. ...-||+.++
T Consensus 913 ~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek 943 (1174)
T KOG0933|consen 913 HEVTKLESEKANARKEVEKLLKKHEWIGDEK 943 (1174)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHhccchhHHH
Confidence 77776665555544443 3344566554
No 77
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.33 E-value=2.7e+02 Score=32.85 Aligned_cols=149 Identities=25% Similarity=0.307 Sum_probs=86.3
Q ss_pred hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-hhHHHHH----H
Q 003812 142 KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR-KHKTAFI----E 216 (793)
Q Consensus 142 ~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~-Khk~a~l----E 216 (793)
+-....+||+..++=++.++...+ .=+..|++.+....+++-.-- |-+..| +||-+.+ -
T Consensus 266 q~~e~~selE~llklkerl~e~l~-----------dgeayLaKL~~~l~~~~~~~~-----~ltqqwed~R~pll~kkl~ 329 (521)
T KOG1937|consen 266 QFEEQNSELEKLLKLKERLIEALD-----------DGEAYLAKLMGKLAELNKQME-----ELTQQWEDTRQPLLQKKLQ 329 (521)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcC-----------ChHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHH
Confidence 345566677766666666664322 123344444444433322111 112223 6666654 2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----hhhhhhhHHHHHHHHhhccCChHHH
Q 003812 217 LVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKM-----RKDLDQKDKILSAMLRKSKSDTAEK 291 (793)
Q Consensus 217 l~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~kl-----Rkd~e~KDkilSaMLrkSklD~~EK 291 (793)
|+..+.-+|-+=.+ .+.+.-..+.|.++.+.......++.+|..|+.++ |+...|.=+-|-.|.||- +
T Consensus 330 Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq------~ 402 (521)
T KOG1937|consen 330 LREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQ------E 402 (521)
T ss_pred HHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHH------H
Confidence 33333333333334 56677778899999999998899999999999988 445556666666777664 5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 003812 292 QMLLKEVKISKAKRRQAELETE 313 (793)
Q Consensus 292 emLlrEvk~~kAkrK~AE~E~e 313 (793)
+|+.|=+.--++=+|+-+-+.+
T Consensus 403 ~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 403 QDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544455555555554443
No 78
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.69 E-value=1.9e+02 Score=30.77 Aligned_cols=99 Identities=27% Similarity=0.351 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHhhHHHHHHHHhhHH
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE---NAKQEAQEHSNEIRKHKTAFIELVSNQR 222 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE---~akrEaqehS~dl~Khk~a~lEl~s~Qr 222 (793)
.|.+++.+..+++.+... +-++ .+-+...+++..|++. .+..|--.|..+|+-=..-+-.|..--.
T Consensus 2 ~i~~ir~K~~~lek~k~~----i~~e-------~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNE----ILQE-------VESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred cHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999988888751 1111 1222233333444433 3345555666666533333334444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 003812 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKD 269 (793)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd 269 (793)
+++.+..+....+...-.|+. .|.++|..||++
T Consensus 71 qa~~er~~~~~~i~r~~eey~--------------~Lk~~in~~R~e 103 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYK--------------PLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 455555555555544444554 889999999999
No 79
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.21 E-value=4.3e+02 Score=33.98 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHH--HHHHHHHHHHHHHHHHHHhh
Q 003812 86 AEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFS--ERKQLRQQIGALINELRILD 140 (793)
Q Consensus 86 AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~--ErKrLr~qI~al~~E~~~le 140 (793)
..+-..++.+.+++=+-| -.=-|||-+++.--.. |++..--+|..+..++..++
T Consensus 406 lKd~~~EIerLK~dl~Aa-ReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~ 461 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAA-REKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLE 461 (1041)
T ss_pred HHHHHHHHHHHHHHHHHh-HhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333 3345888888876433 56666666777666666643
No 80
>PRK09039 hypothetical protein; Validated
Probab=62.75 E-value=2.5e+02 Score=31.10 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 003812 127 QQIGALINELRI 138 (793)
Q Consensus 127 ~qI~al~~E~~~ 138 (793)
++|....+|+..
T Consensus 46 ~~i~~~~~eL~~ 57 (343)
T PRK09039 46 REISGKDSALDR 57 (343)
T ss_pred HHHhhHHHHHHH
Confidence 334444444433
No 81
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=62.06 E-value=3.1e+02 Score=31.95 Aligned_cols=65 Identities=26% Similarity=0.325 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhhHHHHH---HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 003812 209 KHKTAFIELVSNQRQLE---AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQK 273 (793)
Q Consensus 209 Khk~a~lEl~s~QrqlE---aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~K 273 (793)
.|-.++-||.+.+.+|+ -++..++..-+.+-.+.+.+.-.-......+..|+.||..++..++.-
T Consensus 124 q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 124 QYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555557777776665 455555555555555666556666666777888899999888887763
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.91 E-value=2.5e+02 Score=30.53 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=40.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 003812 229 GRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKIS 301 (793)
Q Consensus 229 ~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~ 301 (793)
...-..+.+.+.+|..+-........-+.++..+...+..++.+-++++. .....+..|-..|-.++...
T Consensus 219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~---~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 219 AEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE---ECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555777777777777777777654 34556777666666555544
No 83
>PRK12704 phosphodiesterase; Provisional
Probab=60.76 E-value=3.3e+02 Score=31.92 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhhhh-HHHHHHHHhhccCChHH-HHHHHHHHH
Q 003812 258 KLSLEIVKMRKDLDQK-DKILSAMLRKSKSDTAE-KQMLLKEVK 299 (793)
Q Consensus 258 kLs~El~klRkd~e~K-DkilSaMLrkSklD~~E-KemLlrEvk 299 (793)
+...++..++++++.+ ......+-+-|.++.+| |+.|+..+.
T Consensus 121 ~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~ 164 (520)
T PRK12704 121 QKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVE 164 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4445555555554443 33445566778898887 455555543
No 84
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=60.44 E-value=3.1e+02 Score=31.41 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003812 176 KELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQV 235 (793)
Q Consensus 176 keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (793)
.+.+.+|+.+..-+.++.+.++.++++...++. .+.++--....++.++|.|-.+|..++
T Consensus 56 ~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~el 117 (445)
T PRK13428 56 QAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQL 117 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777666555553 223333344555555666555555554
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=59.15 E-value=1.9e+02 Score=28.46 Aligned_cols=111 Identities=25% Similarity=0.275 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE 225 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlE 225 (793)
.+.+++.++++++.-...++..|..=.+|...|+..|..++.-..+++..+. + + .++....=-|-..=..||
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le----e-~---~~~~~~~E~l~rriq~LE 86 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE----E-S---EKRKSNAEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-H---HHHHHhHHHHHhhHHHHH
Confidence 4566777777777766655555555567777777777666666655544332 1 1 122222224555556899
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 003812 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIV 264 (793)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~ 264 (793)
.+|..+-..|..+...|..+...-+...-.++.|-.+..
T Consensus 87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~ 125 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD 125 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 999999999999999999888888877777777665543
No 86
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=58.86 E-value=4.4e+02 Score=32.74 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=47.5
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhhhhhh---------hhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhH
Q 003812 77 CKLSQKLDAAEREIEELKKLRHEDAKAN---------EKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESI 147 (793)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkrR~EDAKAN---------eKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i 147 (793)
..|...| .+..++..|... .-+++ +++.+=|. +-..|+.++..++..+.+.+-.++.+.+..-
T Consensus 77 ~~LqeEL-r~q~e~~rL~~~---~e~~~~e~e~l~~ld~~~~q~~----rl~~E~er~~~El~~lr~~lE~~q~~~e~~q 148 (775)
T PF10174_consen 77 QALQEEL-RAQRELNRLQQE---LEKAQYEFESLQELDKAQEQFE----RLQAERERLQRELERLRKTLEELQLRIETQQ 148 (775)
T ss_pred HHHHHHH-HHhhHHHHHHHH---hhhcccccchhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777 676666655543 22233 23222222 2345888888888888888888887666555
Q ss_pred HHHHHHHHHHHHHHh
Q 003812 148 SELNEKLKDMELLVR 162 (793)
Q Consensus 148 ~EL~~kLkE~E~l~~ 162 (793)
.+|...-.+.+.|..
T Consensus 149 ~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 149 QTLDKADEEIEKLQE 163 (775)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556655555555553
No 87
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=58.40 E-value=4.2e+02 Score=32.31 Aligned_cols=136 Identities=21% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 121 ERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEED-----EQKRKELEEKISIAEKIAEELREN 195 (793)
Q Consensus 121 ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee-----~~k~keleekLa~aEk~~~eLrE~ 195 (793)
|.++|..+..-..+|+..++ .++..+..|.+++-+.+.+.. ..++++ ....++..++.+-.-..-..+
T Consensus 122 e~~~lk~~lee~~~el~~~k-~qq~~v~~l~e~l~k~~~~~~---~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~--- 194 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLK-TQQVTVRNLKERLRKLEQLLE---IFIENAANETEEKLEQEWAEREAGLKDEEQNL--- 194 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhh-hhHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHH----HHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 003812 196 AKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQ----VEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLD 271 (793)
Q Consensus 196 akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~----l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e 271 (793)
...+..|...+..+-+++.-.-.+|.-.... +.+...|+-.++---+.....+..|-.|+..||..+.
T Consensus 195 --------~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 195 --------QEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 88
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.34 E-value=42 Score=29.66 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHHh
Q 003812 127 QQIGALINELRILDK---KKDESISELNEKLKDMELLVR 162 (793)
Q Consensus 127 ~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~~ 162 (793)
.+|..|+.|-..|.. +...-|..|+.+.++.|.-+.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~ 50 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIK 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 578889988888775 466788888888888877665
No 89
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=58.12 E-value=97 Score=28.22 Aligned_cols=65 Identities=35% Similarity=0.447 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 003812 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEEL 242 (793)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL 242 (793)
.+......+.+.+|..++.-+.++.+.++.++......+. ..++.+++..+..|..++...+...
T Consensus 47 ~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~---------~ea~~~~~~~~~~a~~~i~~e~~~a 111 (132)
T PF00430_consen 47 EEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEIL---------AEAEKEAERIIEQAEAEIEQEKEKA 111 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677778888888888887777777666443332 2234444455555555554444433
No 90
>PRK01156 chromosome segregation protein; Provisional
Probab=57.88 E-value=4.2e+02 Score=32.18 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=3.3
Q ss_pred HhhhhHHH
Q 003812 409 RHHLELEA 416 (793)
Q Consensus 409 rH~~EIeA 416 (793)
-|+.++-.
T Consensus 867 sh~~~~~~ 874 (895)
T PRK01156 867 SHHRELLS 874 (895)
T ss_pred ECchHHHH
Confidence 34444333
No 91
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=56.96 E-value=2.4e+02 Score=29.12 Aligned_cols=140 Identities=23% Similarity=0.313 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003812 127 QQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNE 206 (793)
Q Consensus 127 ~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~d 206 (793)
++|.-|.+++..+...-..-. -=++-|+.+...-. +|+..-+.-..+|-.-++....-+--||+.+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~-~ENk~Lk~lq~Rq~---kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L---------- 77 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELR-KENKTLKQLQKRQE---KALQKYEDTEAELPQLLQRHNEEVRVLRERL---------- 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH----------
Confidence 456666666666553221111 11233444443333 4444444444455544555554444444433
Q ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 003812 207 IRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKE-ESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSK 285 (793)
Q Consensus 207 l~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~ke-e~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSk 285 (793)
|+.+...-++-..-++.+.+|-+ .+.++..+..-.+ .+-.-..+|...|..+...++++|+-|+.|-++..
T Consensus 78 -R~~q~~~r~~~~klk~~~~el~k-------~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 78 -RKSQEQERELERKLKDKDEELLK-------TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333332233333333344443 3333333322222 23333678999999999999999999999988776
Q ss_pred CCh
Q 003812 286 SDT 288 (793)
Q Consensus 286 lD~ 288 (793)
+..
T Consensus 150 L~~ 152 (194)
T PF15619_consen 150 LEN 152 (194)
T ss_pred HHh
Confidence 644
No 92
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=55.87 E-value=2e+02 Score=27.80 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 003812 173 QKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEEL 242 (793)
Q Consensus 173 ~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL 242 (793)
....+.+..|+.+..-+..+++.+..++++-+.. .+..++.+++.++..|..++..-+..+
T Consensus 59 ~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~---------~~~~A~~~~~~~~~~a~~~l~~e~~~~ 119 (141)
T PRK08476 59 EIEHEIETILKNAREEANKIRQKAIAKAKEEAEK---------KIEAKKAELESKYEAFAKQLANQKQEL 119 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666555655555555555543322 234445555555555555554444433
No 93
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=54.98 E-value=1.6e+02 Score=32.54 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=39.4
Q ss_pred cchhHHHHHHHHHHHHHHhhcCCCCC-CCcCCcc-chhhHHHHHHHHHHHhh------------hhhhhhhcHHHHH
Q 003812 614 LGVSYKLKRLKQQLLMLERFTGKSGE-DTESNDD-GIKGLLSLISLLNKQVG------------RYQSLQGKIDDIC 676 (793)
Q Consensus 614 lgVSyKiKrLkQqll~LErl~g~~~e-~~~~~~~-~~r~~~~~~sll~Kqv~------------RYQsL~~KiDdLC 676 (793)
++...|+--|++-|-.||++.|-+.. ...-+.+ +++++.-.+.-|..++. |+++|..+++.|.
T Consensus 205 ~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~ 281 (388)
T PF04912_consen 205 SQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELA 281 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999332 1122222 45556655655665553 5555555555443
No 94
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=54.88 E-value=2.9e+02 Score=29.32 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003812 169 EEDEQKRKELEEKISIAEKIA 189 (793)
Q Consensus 169 Eee~~k~keleekLa~aEk~~ 189 (793)
|+.+++..+|+.||...+.-.
T Consensus 1 E~aEr~k~Ele~rL~q~eee~ 21 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEM 21 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHH
Confidence 455677788888887776555
No 95
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=54.23 E-value=38 Score=36.80 Aligned_cols=111 Identities=24% Similarity=0.338 Sum_probs=66.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhcCCCCCCCcCCccchhhH-HHHH----HHHHHHhhhhhhhhhcHHHHHHHhhhcCCCCC
Q 003812 613 ALGVSYKLKRLKQQLLMLERFTGKSGEDTESNDDGIKGL-LSLI----SLLNKQVGRYQSLQGKIDDICKRLHETGPEIS 687 (793)
Q Consensus 613 algVSyKiKrLkQqll~LErl~g~~~e~~~~~~~~~r~~-~~~~----sll~Kqv~RYQsL~~KiDdLCkRm~~sd~~~~ 687 (793)
.-.|+-.|..|...+-.+. .....+.++++| .+++ .-+.+-..+||+.++.||.+...+..+.-.-.
T Consensus 44 ~~~vg~~L~~L~~~~~~~d--------p~~~~~~~~~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~ 115 (333)
T PF05816_consen 44 SGEVGELLNELRKEMDELD--------PSELKDEKKKGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELL 115 (333)
T ss_pred cchHhHHHHHHHHHHHhCC--------hhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665443331 111111344443 3354 47778889999999999999998844321100
Q ss_pred CCCchhhhcccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccccc
Q 003812 688 PEDSSTAKRRGDTKTLEHFLEETFQLQRYIVSTGQKLMEVQSKIASGFVE 737 (793)
Q Consensus 688 ~~~s~~~r~~~~t~~l~~FLeEtFqLQry~v~TgQKlme~Qs~i~~~~~~ 737 (793)
+- -.. =..-.+.-++...+|+.|+.+.-.++-++...+.+....
T Consensus 116 ~d-~~~-----L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~ 159 (333)
T PF05816_consen 116 RD-NAM-----LDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQA 159 (333)
T ss_pred HH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 00 000 011223445666789999999999999999987776653
No 96
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.22 E-value=1.2e+02 Score=26.99 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 003812 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (793)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (793)
.+||.....|+..+..-+.|++.+-+.+..-..-...|..|..+++.+-+.=..=|.++|.|
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999888888888899999999998888877778888765
No 97
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.83 E-value=6.2e+02 Score=32.87 Aligned_cols=227 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHH
Q 003812 84 DAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELL 160 (793)
Q Consensus 84 ~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l 160 (793)
...+..+-+|=.+=+.-.++|+.|. +-.+|.+++-..++.-.++++.... +.-+.+.....++++++.+
T Consensus 213 ~q~e~~L~qLfhvE~~i~k~~~els--------~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~ 284 (1141)
T KOG0018|consen 213 AQKEQFLWELFHVEACIEKANDELS--------RLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEK 284 (1141)
T ss_pred HHHHHHHHHHhhhhhhHhhhhHHHH--------HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHH-------
Q 003812 161 VRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHR------- 233 (793)
Q Consensus 161 ~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~------- 233 (793)
+.. -...=....+.-..-.||...++.+ ++++.++++|+.++.+-+.-+..|-.+...+|.++..-..
T Consensus 285 l~e-rp~li~~ke~~~~~k~rl~~~~k~i----~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~ln 359 (1141)
T KOG0018|consen 285 LAE-RPELIKVKENASHLKKRLEEIEKDI----ETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELN 359 (1141)
T ss_pred Hhh-hhHHhhcchhhccchhHHHHhhhhH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q ss_pred ----------------------HHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHH
Q 003812 234 ----------------------QVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEK 291 (793)
Q Consensus 234 ----------------------~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EK 291 (793)
.|+..+.+..+-....+.--....+|...+..++..++-.++-+..|+-+.+--.+.=
T Consensus 360 l~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~ 439 (1141)
T KOG0018|consen 360 LKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSY 439 (1141)
T ss_pred cchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-HHHHHhhhhhh
Q 003812 292 QMLLKEVKISKAKRRQAELET-ERWKAASQSRH 323 (793)
Q Consensus 292 emLlrEvk~~kAkrK~AE~E~-erWkrlaE~rh 323 (793)
+.+..++.........++.+. +.=+.+.+.+|
T Consensus 440 ~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ 472 (1141)
T KOG0018|consen 440 EELKHDLDSLESLVSSAEEEPYELNEELVEVLD 472 (1141)
T ss_pred HHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHH
No 98
>PRK04863 mukB cell division protein MukB; Provisional
Probab=53.39 E-value=6.9e+02 Score=33.30 Aligned_cols=52 Identities=6% Similarity=0.111 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHH
Q 003812 258 KLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAEL 310 (793)
Q Consensus 258 kLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~ 310 (793)
.+..++...++.+..-+.+ -.++--..++.++-++.+..+....+.....-.
T Consensus 408 elQ~el~q~qq~i~~Le~~-~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~ 459 (1486)
T PRK04863 408 VQQTRAIQYQQAVQALERA-KQLCGLPDLTADNAEDWLEEFQAKEQEATEELL 459 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433 234445678888888877777655544443333
No 99
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.34 E-value=4.8e+02 Score=32.10 Aligned_cols=13 Identities=8% Similarity=-0.176 Sum_probs=8.2
Q ss_pred HHHhhhhhhhhhH
Q 003812 107 VVGIFAAQEQSWF 119 (793)
Q Consensus 107 Vv~IfAsheqsW~ 119 (793)
..-||++|-....
T Consensus 441 ~~vIitTH~~el~ 453 (782)
T PRK00409 441 AKIIATTHYKELK 453 (782)
T ss_pred CEEEEECChHHHH
Confidence 3567888875443
No 100
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.77 E-value=1.5e+02 Score=35.90 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHH---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 120 SERKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELLV---RSKDRVLEEDEQKRKELEEKISIAEKIAEELR 193 (793)
Q Consensus 120 ~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~---~~kdka~Eee~~k~keleekLa~aEk~~~eLr 193 (793)
.+-+.+...+..|..|...|+. ...+.|..|+.+|.++..=+ .-+++.++.-+++-..|+-+|....+.+++|+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555443 23344444544444433222 22344454445555566666666666666665
Q ss_pred HHH
Q 003812 194 ENA 196 (793)
Q Consensus 194 E~a 196 (793)
..+
T Consensus 502 ~~l 504 (652)
T COG2433 502 RKL 504 (652)
T ss_pred HHH
Confidence 444
No 101
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=52.02 E-value=3.2e+02 Score=29.08 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=29.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 212 TAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 212 ~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
+-|-+|..+-+.+|.....|...+..+...++
T Consensus 92 eRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e 123 (207)
T PF05546_consen 92 ERFTELYRNDHENEQAEEEAKEALEEAEEKVE 123 (207)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999888887
No 102
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=51.89 E-value=4.6e+02 Score=30.79 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhhhh-HHHHHHHHhhccCChHH-HHHHHHHHH
Q 003812 258 KLSLEIVKMRKDLDQK-DKILSAMLRKSKSDTAE-KQMLLKEVK 299 (793)
Q Consensus 258 kLs~El~klRkd~e~K-DkilSaMLrkSklD~~E-KemLlrEvk 299 (793)
....++..+.++.+.. ......|=+-|.++.+| |+.|+..+.
T Consensus 115 ~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~ 158 (514)
T TIGR03319 115 NKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVE 158 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4444555555544442 23334555668888877 555555543
No 103
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=51.49 E-value=2.6e+02 Score=27.87 Aligned_cols=14 Identities=7% Similarity=-0.228 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHH
Q 003812 250 EESVSFAQKLSLEI 263 (793)
Q Consensus 250 ee~~~~~qkLs~El 263 (793)
+.+..++.+...++
T Consensus 163 ~~~~~lid~~i~~l 176 (184)
T CHL00019 163 ELHLRTINANIGLL 176 (184)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 104
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=51.32 E-value=2.4e+02 Score=27.31 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=14.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 003812 216 ELVSNQRQLEAELGRAHRQVEARKEEL 242 (793)
Q Consensus 216 El~s~QrqlEaeL~rA~~~l~a~~~EL 242 (793)
++..+..+++.+...+..++.+-=..|
T Consensus 104 ~~~~a~~~l~~e~~~~~~~l~~qv~~~ 130 (141)
T PRK08476 104 KYEAFAKQLANQKQELKEQLLSQMPEF 130 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455566666666666664433333
No 105
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=50.88 E-value=5.3e+02 Score=31.20 Aligned_cols=122 Identities=24% Similarity=0.353 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH---HHHHHHHHHHHHhHHHHHHHHHhhhh
Q 003812 175 RKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE---AELGRAHRQVEARKEELDLVLEQKEE 251 (793)
Q Consensus 175 ~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlE---aeL~rA~~~l~a~~~EL~sv~e~kee 251 (793)
..+.+++|...|..+.++.+.. .+.+...+.+...|+++.=.++--++|- +||-.+.-.|..-|.+|.+.+-. +.
T Consensus 117 ~~EqEerL~ELE~~le~~~e~~-~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~-Eq 194 (617)
T PF15070_consen 117 NQEQEERLAELEEELERLQEQQ-EDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQS-EQ 194 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHH-HH
Confidence 3566788888888888886654 3455556677778888774444445666 55566666777777666654432 22
Q ss_pred hH--HHHHH---HHHHHHHHhhhhhhhHHHHHHHHhh--------------ccCChHHHHHHHHHH
Q 003812 252 SV--SFAQK---LSLEIVKMRKDLDQKDKILSAMLRK--------------SKSDTAEKQMLLKEV 298 (793)
Q Consensus 252 ~~--~~~qk---Ls~El~klRkd~e~KDkilSaMLrk--------------SklD~~EKemLlrEv 298 (793)
|+ .+..+ |-.++..++.-++-|+.-+..+-.. +--.+.|++.|=+.+
T Consensus 195 ~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~ 260 (617)
T PF15070_consen 195 HVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQL 260 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23333 3334445555666665544443221 112366777777665
No 106
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.49 E-value=16 Score=38.65 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=35.7
Q ss_pred HHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhh
Q 003812 429 EGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKL 466 (793)
Q Consensus 429 EaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~l 466 (793)
.-||-|..-+|.|+.+++..+..|..++..++.||.+|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999886
No 107
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.07 E-value=1e+02 Score=30.83 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Q 003812 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSD 287 (793)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD 287 (793)
.+....+.++-+++.||.+++....--..-+..|+.||..||..+.++-.-...=|.|..+.
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~Gv~ 122 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEAGIP 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444557788889999988877777777788999999999999988877776666665544
No 108
>PHA02562 46 endonuclease subunit; Provisional
Probab=48.88 E-value=4.4e+02 Score=29.76 Aligned_cols=24 Identities=8% Similarity=0.266 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHH
Q 003812 256 AQKLSLEIVKMRKDLDQKDKILSA 279 (793)
Q Consensus 256 ~qkLs~El~klRkd~e~KDkilSa 279 (793)
..++...+..+++.+..+..-|+.
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554444444
No 109
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.23 E-value=5.8e+02 Score=31.38 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=6.7
Q ss_pred HHhhhhhhhh
Q 003812 108 VGIFAAQEQS 117 (793)
Q Consensus 108 v~IfAsheqs 117 (793)
.-||++|-..
T Consensus 437 ~viitTH~~e 446 (771)
T TIGR01069 437 QVLITTHYKE 446 (771)
T ss_pred EEEEECChHH
Confidence 3478888754
No 110
>PRK03918 chromosome segregation protein; Provisional
Probab=48.11 E-value=5.6e+02 Score=30.74 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=8.5
Q ss_pred hhhhHH----HHHHHHHHH
Q 003812 115 EQSWFS----ERKQLRQQI 129 (793)
Q Consensus 115 eqsW~~----ErKrLr~qI 129 (793)
+-.|+. +|+++..+|
T Consensus 136 ~~~~~~~~~~~r~~~~~~~ 154 (880)
T PRK03918 136 EIDAILESDESREKVVRQI 154 (880)
T ss_pred chHHHhcCcHHHHHHHHHH
Confidence 334554 666666555
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=47.43 E-value=3e+02 Score=27.45 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 003812 227 ELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDL 270 (793)
Q Consensus 227 eL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~ 270 (793)
.+-.+..+.++++.++..+-.....-..--..|..|++.+|.+-
T Consensus 39 ~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 39 NKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555544443333333333334445555555443
No 112
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=47.01 E-value=4.7e+02 Score=29.49 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=13.4
Q ss_pred hHHhHHHHHHHHHHHHHHhhh
Q 003812 78 KLSQKLDAAEREIEELKKLRH 98 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~ 98 (793)
.+..++..++.++..|+.-+.
T Consensus 101 ~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 101 LLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777766543
No 113
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=46.34 E-value=8.3e+02 Score=32.23 Aligned_cols=49 Identities=33% Similarity=0.302 Sum_probs=26.2
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003812 78 KLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELR 137 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~ 137 (793)
.|...+...+++++.+++...-.+-.|+||. ..|+.|..+...+..|+.
T Consensus 512 ~l~~~~~~~~eele~~q~~~~~~~~~~~kv~-----------~~rk~le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 512 KLEALVRQLEEELEDAQKKNDNAADSLEKVN-----------SLRKQLEEAELDMRAESE 560 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHhhhhhhhhHH
Confidence 3444444444455555444444445555554 466667666666655544
No 114
>PTZ00491 major vault protein; Provisional
Probab=46.25 E-value=6.3e+02 Score=31.94 Aligned_cols=93 Identities=27% Similarity=0.289 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE 225 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlE 225 (793)
.+-+|+.+..-.|.-..++-.+.-..+-.+.+.+.-+..|+.=+.-+ +.++..-..-+++.++..|+-...+-+||
T Consensus 700 ~llel~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~----~i~~~ael~~~~~~~~~e~~~~~~~~~le 775 (850)
T PTZ00491 700 KLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKAL----RIEAEAELEKLRKRQELELEYEQAQNELE 775 (850)
T ss_pred HHHHHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHH----HHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45566666666666665544444444444555554444444333222 23333333345677788888888888888
Q ss_pred HHHHHHHHHHHHhHHHH
Q 003812 226 AELGRAHRQVEARKEEL 242 (793)
Q Consensus 226 aeL~rA~~~l~a~~~EL 242 (793)
-+-.+++.++++.+.+=
T Consensus 776 ~~k~~~la~ie~~kf~~ 792 (850)
T PTZ00491 776 IAKAKELADIEATKFER 792 (850)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888887653
No 115
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=45.01 E-value=4.6e+02 Score=29.38 Aligned_cols=111 Identities=23% Similarity=0.407 Sum_probs=71.6
Q ss_pred hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhH
Q 003812 142 KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQ 221 (793)
Q Consensus 142 ~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~Q 221 (793)
+|+-.|.-|+-+|||-+.-+..||.+|++ |...|+ +-++-.||=.|-.
T Consensus 65 QKEV~iRHLkakLkes~~~l~dRetEI~e-------LksQL~-------------------------RMrEDWIEEECHR 112 (305)
T PF15290_consen 65 QKEVCIRHLKAKLKESENRLHDRETEIDE-------LKSQLA-------------------------RMREDWIEEECHR 112 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHH-------------------------HHHHHHHHHHHHH
Confidence 56777888999999998888766666543 333333 2333344444432
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 003812 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKIS 301 (793)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~ 301 (793)
+||+|+ |-.|+.|++ -|-.=|.+||--+-+|||=|---.---+|--.-=|-||.=..+|
T Consensus 113 --VEAQLA-----LKEARkEIk--------------QLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElA 171 (305)
T PF15290_consen 113 --VEAQLA-----LKEARKEIK--------------QLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELA 171 (305)
T ss_pred --HHHHHH-----HHHHHHHHH--------------HHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHH
Confidence 566654 334556665 55566778888888888887766655566555667788766666
Q ss_pred HHHH
Q 003812 302 KAKR 305 (793)
Q Consensus 302 kAkr 305 (793)
+.+-
T Consensus 172 q~g~ 175 (305)
T PF15290_consen 172 QSGS 175 (305)
T ss_pred Hhcc
Confidence 6654
No 116
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=44.92 E-value=5.9e+02 Score=31.96 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH-------HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHH----HHHHH
Q 003812 194 ENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE-------AELGRAHRQVEARKEELDLVLEQKEESVSFAQ----KLSLE 262 (793)
Q Consensus 194 E~akrEaqehS~dl~Khk~a~lEl~s~QrqlE-------aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~q----kLs~E 262 (793)
..++.++|...+++.+|++..-+....-+.++ ++|-||+..+......-..++-.-+|--.++- --...
T Consensus 138 peveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~ 217 (916)
T KOG0249|consen 138 PEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALED 217 (916)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 34567788888888888877754444444444 44444444333222222222211111111110 01123
Q ss_pred HHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 003812 263 IVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISK 302 (793)
Q Consensus 263 l~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~k 302 (793)
..+|=+++++=-+++.+|..--+-=..++++|.-|+++.+
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444445555554443334556677777777666
No 117
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=43.38 E-value=51 Score=31.99 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 003812 113 AQEQSWFSERKQLRQQIGALINELRILDKK 142 (793)
Q Consensus 113 sheqsW~~ErKrLr~qI~al~~E~~~le~~ 142 (793)
.-+..|-.||-.|..+|..|.-|.+.++.-
T Consensus 18 rdR~~WeiERaEmkarIa~LEGE~r~~e~l 47 (134)
T PF08232_consen 18 RDRNQWEIERAEMKARIAFLEGERRGQENL 47 (134)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999987753
No 118
>PRK04863 mukB cell division protein MukB; Provisional
Probab=43.09 E-value=9.7e+02 Score=32.04 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=11.5
Q ss_pred cchhhhhhHHHHHHHhhhc
Q 003812 17 SLYPMYFGVSCAFFALRML 35 (793)
Q Consensus 17 ~l~~~YfGVs~Af~AL~~L 35 (793)
.+|..-||.+..+||-.-+
T Consensus 257 dlFk~lI~~~~~~~aad~~ 275 (1486)
T PRK04863 257 DLFKHLITESTNYVAADYM 275 (1486)
T ss_pred HHHHHHhhhhhhhhHHHHh
Confidence 3566667777777754443
No 119
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=42.56 E-value=4e+02 Score=27.47 Aligned_cols=168 Identities=24% Similarity=0.349 Sum_probs=100.4
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc------hhhHHHHHHH
Q 003812 80 SQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKK------DESISELNEK 153 (793)
Q Consensus 80 ~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k------~~~i~EL~~k 153 (793)
+.-+....+||.+||+.- ..|+|-+.-.+ .|-++|..-+..+..|...|+..- ...+..++..
T Consensus 26 L~lIksLKeei~emkk~e----~~~~k~m~ei~-------~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~r 94 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKE----ERNEKLMAEIS-------QENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKAR 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999998843 34555443333 345566666666666665555421 1123333333
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003812 154 LKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHR 233 (793)
Q Consensus 154 LkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~ 233 (793)
++.. ++.+..-+..+..|+.++..++.--.+|..+-..-++++- +++.|- ---||..|..-..
T Consensus 95 l~~~-------ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq-----Qk~~~k-----n~lLEkKl~~l~~ 157 (201)
T PF13851_consen 95 LKEL-------EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ-----QKTGLK-----NLLLEKKLQALSE 157 (201)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHHH
Confidence 3322 2555566777889999999999988888776665555532 344442 1236777888888
Q ss_pred HHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 003812 234 QVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILS 278 (793)
Q Consensus 234 ~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilS 278 (793)
.++....+|.+|+.+.-=-...+..++ .++..=++.|+..|.
T Consensus 158 ~lE~keaqL~evl~~~nldp~~~~~v~---~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 158 QLEKKEAQLNEVLAAANLDPAALSQVS---KKLEDVLDSKNQTIK 199 (201)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 888889999888876443333333333 334444555665553
No 120
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=41.44 E-value=4.2e+02 Score=27.41 Aligned_cols=162 Identities=27% Similarity=0.388 Sum_probs=75.9
Q ss_pred hHHhHHHHHHHHHHHHHH--hhhhhhh-----hhhhHHHhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHhhhhchhhH
Q 003812 78 KLSQKLDAAEREIEELKK--LRHEDAK-----ANEKVVGIFAAQEQS---WFSERKQLRQQIGALINELRILDKKKDESI 147 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKk--rR~EDAK-----ANeKVv~IfAsheqs---W~~ErKrLr~qI~al~~E~~~le~~k~~~i 147 (793)
.+..++.....|.+=||. .|++.|= .+...-.|.++|..- |+..=++...++..+...+.. ++..+
T Consensus 23 elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~----~~~el 98 (194)
T PF15619_consen 23 ELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD----KDEEL 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 445555555555555554 3444332 233455555555532 222222222233333322222 45566
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHH
Q 003812 148 SELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAE 227 (793)
Q Consensus 148 ~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEae 227 (793)
-.++..++-+..|+..+ -+.+ +.+|..+|..++....+ ..+.++ +|.++ .-++-.+-++|+
T Consensus 99 ~k~~~~l~~L~~L~~dk--nL~e----ReeL~~kL~~~~~~l~~----~~~ki~----~Lek~--leL~~k~~~rql--- 159 (194)
T PF15619_consen 99 LKTKDELKHLKKLSEDK--NLAE----REELQRKLSQLEQKLQE----KEKKIQ----ELEKQ--LELENKSFRRQL--- 159 (194)
T ss_pred HHHHHHHHHHHHHHHcC--Cchh----HHHHHHHHHHHHHHHHH----HHHHHH----HHHHH--HHHHhhHHHHHH---
Confidence 66777777777776532 2222 34555555555544421 122222 22221 112222223222
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHH
Q 003812 228 LGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKIL 277 (793)
Q Consensus 228 L~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkil 277 (793)
..-.+-...+..++. .|-+||..|++-+..||+.|
T Consensus 160 -~~e~kK~~~~~~~~~--------------~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 160 -ASEKKKHKEAQEEVK--------------SLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred -HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhcC
Confidence 222233333444444 78889999999999888753
No 121
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.04 E-value=5.6e+02 Score=31.43 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 003812 289 AEKQMLLKEVKISKA 303 (793)
Q Consensus 289 ~EKemLlrEvk~~kA 303 (793)
++=.+++++|+..++
T Consensus 699 ~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 699 EEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555566555543
No 122
>PRK03918 chromosome segregation protein; Provisional
Probab=41.02 E-value=7.1e+02 Score=29.91 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=7.0
Q ss_pred hhhhcHHHHHHHh
Q 003812 667 SLQGKIDDICKRL 679 (793)
Q Consensus 667 sL~~KiDdLCkRm 679 (793)
.++..++++-.+|
T Consensus 744 ~l~~~~~~if~~l 756 (880)
T PRK03918 744 KVGEIASEIFEEL 756 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555555
No 123
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=40.73 E-value=4.8e+02 Score=27.86 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-----------chhhHHHHHHHHHHHHHHHh
Q 003812 122 RKQLRQQIGALINELRILDKK-----------KDESISELNEKLKDMELLVR 162 (793)
Q Consensus 122 rKrLr~qI~al~~E~~~le~~-----------k~~~i~EL~~kLkE~E~l~~ 162 (793)
++|||.+ |..|+..|+++ ....+..|.+.|.|+|.-+.
T Consensus 26 E~rLR~~---lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErIL 74 (205)
T PF12240_consen 26 ERRLRTR---LERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERIL 74 (205)
T ss_pred HHHHHHH---HHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3566665 56788888863 23468889999999998885
No 124
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.49 E-value=5.3e+02 Score=28.30 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 003812 258 KLSLEIVKMRK 268 (793)
Q Consensus 258 kLs~El~klRk 268 (793)
-.+..+.+||+
T Consensus 124 ~~~~~L~~L~k 134 (314)
T PF04111_consen 124 YASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHCHHT
T ss_pred HHHHHHHHHHh
Confidence 44455555555
No 125
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.23 E-value=2.9e+02 Score=28.85 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003812 175 RKELEEKISIAEKIAEE 191 (793)
Q Consensus 175 ~keleekLa~aEk~~~e 191 (793)
..++.++++..+....+
T Consensus 120 ~~~l~~~~~~~~~~~~~ 136 (206)
T PRK10884 120 TAEMQQKVAQSDSVING 136 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555554444433
No 126
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=40.00 E-value=4.5e+02 Score=27.26 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 003812 228 LGRAHRQVE 236 (793)
Q Consensus 228 L~rA~~~l~ 236 (793)
+..|..++.
T Consensus 151 l~~Ae~~I~ 159 (204)
T PRK09174 151 LKEAEARIA 159 (204)
T ss_pred HHHHHHHHH
Confidence 333333333
No 127
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=40.00 E-value=9e+02 Score=30.82 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=28.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHH
Q 003812 113 AQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLV 161 (793)
Q Consensus 113 sheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~ 161 (793)
-.+.-|..-=+.+-.+|+-|++-|..-+--.+..-++.....+-.|.++
T Consensus 861 e~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~ 909 (1259)
T KOG0163|consen 861 EGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLV 909 (1259)
T ss_pred cchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence 3556677777888888888887776433223333344444444455544
No 128
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.87 E-value=7.3e+02 Score=29.70 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=11.3
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhh
Q 003812 260 SLEIVKMRKDLDQKDKILSAMLRK 283 (793)
Q Consensus 260 s~El~klRkd~e~KDkilSaMLrk 283 (793)
..|+..|.+|.+-+..+...+|.+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r 398 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTN 398 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554444433
No 129
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.80 E-value=9.1e+02 Score=30.79 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred CcCccCcchhhhhhHHHHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHHhhccccchhhhHHhHHHHHHHHH
Q 003812 11 SEEKSDSLYPMYFGVSCAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQRDGANGEKCKLSQKLDAAEREI 90 (793)
Q Consensus 11 se~~~~~l~~~YfGVs~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq~e~~~g~~~~L~~kL~~AE~ei 90 (793)
|.+-..-+.|.|.||-=|=- -+-||+|..=.+|--+...+ +-..|..|-.+.++|-
T Consensus 285 s~~sis~~~p~~~~~~~aep-~kklP~~~TFEDKrkeNy~k-----------------------GqaELerRRq~leeqq 340 (1118)
T KOG1029|consen 285 SANSISGLEPGGVGVVDAEP-PKKLPAPVTFEDKRKENYEK-----------------------GQAELERRRQALEEQQ 340 (1118)
T ss_pred CCCCccccccCcccccccCc-cccCCCCcchhhhhHHhHhh-----------------------hhHHHHHHHHHHHHHH
Q ss_pred HHHHHh-----hhhhhhhhhhHHHhhhhhhhhhHH--------------------HHHHHHHHHHHHHHHHHHhhh---h
Q 003812 91 EELKKL-----RHEDAKANEKVVGIFAAQEQSWFS--------------------ERKQLRQQIGALINELRILDK---K 142 (793)
Q Consensus 91 ~eLKkr-----R~EDAKANeKVv~IfAsheqsW~~--------------------ErKrLr~qI~al~~E~~~le~---~ 142 (793)
+.=+.+ |.|-+|-| -+-+||-|+. |||+=+.+-.+++.|+...|. -
T Consensus 341 qreree~eqkEreE~ekke------rerqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewE 414 (1118)
T KOG1029|consen 341 QREREEVEQKEREEEEKKE------RERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWE 414 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhHHHHHHHHHHHHHHH--hhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHH
Q 003812 143 KDESISELNEKLKDMELLV--RSKDRVLEED----EQKRKELEEKISIAEKIAEELRE----------NAKQEAQEHSNE 206 (793)
Q Consensus 143 k~~~i~EL~~kLkE~E~l~--~~kdka~Eee----~~k~keleekLa~aEk~~~eLrE----------~akrEaqehS~d 206 (793)
+-+.-.=|+.+-.|+|..+ -++-+.+..+ .-|..+|.+||--++--..--|. +-.-|....-+.
T Consensus 415 rar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqar 494 (1118)
T KOG1029|consen 415 RARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQAR 494 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 003812 207 IRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQK 273 (793)
Q Consensus 207 l~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~K 273 (793)
|.--.+..+-|+--...|+++|..--..+--..+.+..+-.+..+..++.+.|-+-+.-+-||.+.|
T Consensus 495 ikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk 561 (1118)
T KOG1029|consen 495 IKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESK 561 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 130
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=39.02 E-value=1.1e+03 Score=31.36 Aligned_cols=19 Identities=32% Similarity=0.118 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHhhhhhhh
Q 003812 650 GLLSLISLLNKQVGRYQSL 668 (793)
Q Consensus 650 ~~~~~~sll~Kqv~RYQsL 668 (793)
.++-+-++|+|..-+||.+
T Consensus 1025 ~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1025 ELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 3666778888888888833
No 131
>PRK00846 hypothetical protein; Provisional
Probab=38.98 E-value=1.3e+02 Score=27.44 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=47.2
Q ss_pred HHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHhh
Q 003812 419 EQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQL 488 (793)
Q Consensus 419 eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~~ 488 (793)
+|+-|.|+.++ -|+..+|+-++=..--|+.||.-+.+......+|.. .+.-|.++|....
T Consensus 2 ~~~~~~~~~le---~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~-------ql~~L~~rL~~~~ 61 (77)
T PRK00846 2 EQLSLRDQALE---ARLVELETRLSFQEQALTELSEALADARLTGARNAE-------LIRHLLEDLGKVR 61 (77)
T ss_pred chhhHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhc
Confidence 58889999888 589999999999999999999999998777666543 3455666665544
No 132
>PRK10869 recombination and repair protein; Provisional
Probab=38.35 E-value=7.3e+02 Score=29.23 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 118 WFSERKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (793)
Q Consensus 118 W~~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (793)
...+-+.+-++...+.+++..++. ...+.+.-|+-+++|.+.+.- +.-|++ .-.+-..+|..++++.+-+
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l---~~gE~e--eL~~e~~~L~n~e~i~~~~ 227 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAP---QPGEFE--QIDEEYKRLANSGQLLTTS 227 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC---CCCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444433 345677778888888887774 222222 2233334555666655444
No 133
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=38.33 E-value=10 Score=44.68 Aligned_cols=55 Identities=24% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHhhh
Q 003812 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQLK 489 (793)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~~~ 489 (793)
+-.|+.|..++...+..++..+..+...+.+||.-+..=-.|...|+.+|.++..
T Consensus 373 ~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 373 IQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777788888888888888888888888998888888888999998888764
No 134
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.90 E-value=8e+02 Score=29.60 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=40.3
Q ss_pred HHHHHHHHhhHHHHhhHHHHH-HHHhhHHH---HHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 003812 195 NAKQEAQEHSNEIRKHKTAFI-ELVSNQRQ---LEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDL 270 (793)
Q Consensus 195 ~akrEaqehS~dl~Khk~a~l-El~s~Qrq---lEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~ 270 (793)
....-+.+......+||..++ |++..+.. -+-+..+=+..+...+.+++.+.+-.-....+..+|..|+.+|-|+.
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~ 484 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV 484 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 334445554444458888876 44444322 22223333344444455555555544455556667777777777774
No 135
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.04 E-value=4.4e+02 Score=26.34 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 121 ERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (793)
Q Consensus 121 ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (793)
+.-.|.++|..|..|+...+..+...+.+.+-+-++.+.|- ..++.-....+.|+.-|..+-.-=..|
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~----~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLE----EELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457788888888888888888888888888877777766 356666666677776666655444333
No 136
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=36.43 E-value=5e+02 Score=26.79 Aligned_cols=13 Identities=15% Similarity=0.449 Sum_probs=7.0
Q ss_pred hhHHHHHHHhhhc
Q 003812 23 FGVSCAFFALRML 35 (793)
Q Consensus 23 fGVs~Af~AL~~L 35 (793)
+-|+|.|+-+..+
T Consensus 12 ~~~~~~~~~~~~~ 24 (205)
T PRK06231 12 LLLSFSFLIISLF 24 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666644444
No 137
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.38 E-value=12 Score=44.28 Aligned_cols=71 Identities=24% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003812 119 FSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIA 189 (793)
Q Consensus 119 ~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~ 189 (793)
.+|...++.+|..|..|+..+...++.+..+++.++.+.+.-+....+.+.+-..+.+.+..+-..+++..
T Consensus 60 ~~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el 130 (722)
T PF05557_consen 60 RAELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEEL 130 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888899999999888887777777777777766666554444444444444344444433333333
No 138
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.83 E-value=8.1e+02 Score=29.07 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=41.0
Q ss_pred hHHhHHHHHHHHHHHHHHhhh-----------hhhhhhhh---HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 003812 78 KLSQKLDAAEREIEELKKLRH-----------EDAKANEK---VVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK 142 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~-----------EDAKANeK---Vv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~ 142 (793)
.+..++..++.++.++..... +-..++.+ +..-|.+..-.|..+|..|..+|..+..++...+..
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666555555433222 22223333 334566777789999999999999988888877753
No 139
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.75 E-value=4.7e+02 Score=27.37 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 124 QLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (793)
Q Consensus 124 rLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (793)
.++.++..+.+|+..++++-...-.+.+....+++.-+...+..+.+-+.+-.+|.+.|..+..-.+.|
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433322222333333333333333333444444555556666666555555444
No 140
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.24 E-value=8.6e+02 Score=28.88 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003812 79 LSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDK 141 (793)
Q Consensus 79 L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~ 141 (793)
+.+.+...+.++.++..++.+=-..-...-|.++..++.+..+.+.+..+.....+.++.+-.
T Consensus 228 l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~ 290 (650)
T TIGR03185 228 LAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAA 290 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444443332222222245788888899999999999999988888887663
No 141
>PRK00106 hypothetical protein; Provisional
Probab=34.00 E-value=8.9e+02 Score=28.97 Aligned_cols=8 Identities=38% Similarity=0.472 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 003812 390 RLEGWVRL 397 (793)
Q Consensus 390 ~le~W~~~ 397 (793)
+++++|..
T Consensus 298 rIEe~v~k 305 (535)
T PRK00106 298 RIEELVEK 305 (535)
T ss_pred HHHHHHHH
Confidence 34444433
No 142
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=33.84 E-value=8.1e+02 Score=28.43 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=36.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHhhHHH-HHHHHhh-----HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 003812 176 KELEEKISIAE-KIAEELRENAKQEAQEHSNEIRKHKTA-FIELVSN-----QRQLEAELGRAHRQVEARKEELDLVLEQ 248 (793)
Q Consensus 176 keleekLa~aE-k~~~eLrE~akrEaqehS~dl~Khk~a-~lEl~s~-----QrqlEaeL~rA~~~l~a~~~EL~sv~e~ 248 (793)
.+++......+ +..++|+..+++..+.|+..|...... -+|+... +..++.|-+.=+.+|+.....|..+-.+
T Consensus 314 ~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~ 393 (582)
T PF09731_consen 314 EEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEA 393 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333 335566666666666666555433221 1343222 3334555555556666666666655544
Q ss_pred h
Q 003812 249 K 249 (793)
Q Consensus 249 k 249 (793)
-
T Consensus 394 ~ 394 (582)
T PF09731_consen 394 L 394 (582)
T ss_pred H
Confidence 3
No 143
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.49 E-value=5.1e+02 Score=26.05 Aligned_cols=8 Identities=13% Similarity=-0.006 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003812 224 LEAELGRA 231 (793)
Q Consensus 224 lEaeL~rA 231 (793)
++.+-..|
T Consensus 136 I~~~k~~a 143 (181)
T PRK13454 136 IAEIRAGA 143 (181)
T ss_pred HHHHHHHH
Confidence 33333333
No 144
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.24 E-value=3.2e+02 Score=33.31 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHH
Q 003812 125 LRQQIGALINELRILDK---KKDESISELNEKLKDMELLV 161 (793)
Q Consensus 125 Lr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~ 161 (793)
.+..|....+++..++. +-+.++++|+..+.+++.-+
T Consensus 413 e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~ei 452 (652)
T COG2433 413 ERREITVYEKRIKKLEETVERLEEENSELKRELEELKREI 452 (652)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666554 23445666666666655333
No 145
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=33.03 E-value=1.1e+03 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003812 113 AQEQSWFSERKQLRQQIGALINELRILDK 141 (793)
Q Consensus 113 sheqsW~~ErKrLr~qI~al~~E~~~le~ 141 (793)
.|-|.|-.||..|..-+..|.+|-..|..
T Consensus 235 ~~~~~we~Er~~L~~tVq~L~edR~~L~~ 263 (739)
T PF07111_consen 235 VHSQAWEPEREELLETVQHLQEDRDALQA 263 (739)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999887775
No 146
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.59 E-value=8.8e+02 Score=28.50 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=56.0
Q ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHh---hhhhHHHHHHHHHHHHHHhhhhhh
Q 003812 205 NEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQ---KEESVSFAQKLSLEIVKMRKDLDQ 272 (793)
Q Consensus 205 ~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~---kee~~~~~qkLs~El~klRkd~e~ 272 (793)
..|.|...|.-.|..+...++..|..+..+......|++.|... .++-...++.+..++..+.++...
T Consensus 296 d~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~ 366 (569)
T PRK04778 296 DILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDE 366 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34468888888999999999999999999999999999988877 344566777888888887777664
No 147
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=32.55 E-value=5.1e+02 Score=25.73 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 178 LEEKISIAEKIAEELRENAKQEAQE 202 (793)
Q Consensus 178 leekLa~aEk~~~eLrE~akrEaqe 202 (793)
...-++.|..-++++.+.++.+++.
T Consensus 19 a~~il~~A~~~a~~i~~~a~~~a~~ 43 (198)
T PRK03963 19 IEYILEEAQKEAEKIKEEARKRAES 43 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566665655555554
No 148
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.63 E-value=5.7e+02 Score=32.24 Aligned_cols=64 Identities=23% Similarity=0.203 Sum_probs=41.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHH
Q 003812 143 KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQR 222 (793)
Q Consensus 143 k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~Qr 222 (793)
++..+.-|++..+-++.....-+..+--.+..+..+++++.+..++- +--=|-|-+.|++|
T Consensus 614 N~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~-------------------~~~fa~ID~~Sa~r 674 (1104)
T COG4913 614 NDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQ-------------------ALNFASIDLPSAQR 674 (1104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------hcchhhcchhhHHH
Confidence 44456666666666665554444666666778888888877655543 22234578888888
Q ss_pred HHH
Q 003812 223 QLE 225 (793)
Q Consensus 223 qlE 225 (793)
|++
T Consensus 675 qIa 677 (1104)
T COG4913 675 QIA 677 (1104)
T ss_pred HHH
Confidence 875
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.62 E-value=7.5e+02 Score=27.39 Aligned_cols=138 Identities=28% Similarity=0.404 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhHHHHHH---------HHHHHHhhccccchhhhHHhHHHHHHHHHHHHHHhhhh--hhhhhhhHHHhhhh
Q 003812 45 WSELHDKMLRGSAQLLG---------LLVWRVQRDGANGEKCKLSQKLDAAEREIEELKKLRHE--DAKANEKVVGIFAA 113 (793)
Q Consensus 45 ~~~~lq~MLkgs~~~Lg---------lLa~naq~e~~~g~~~~L~~kL~~AE~ei~eLKkrR~E--DAKANeKVv~IfAs 113 (793)
|-+-+-+||+|--+-|. .-.+..+-...++-...|..+......++.+|+..-.| +--.+
T Consensus 134 WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~--------- 204 (312)
T smart00787 134 WYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPT--------- 204 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHH---------
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 114 QEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELR 193 (793)
Q Consensus 114 heqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLr 193 (793)
|=++++..|..+..++.. +...+.+++.+|.+.+.-+. +...+..++.+.++.++++..+-|
T Consensus 205 -------eL~~lk~~l~~~~~ei~~----~~~~l~e~~~~l~~l~~~I~-------~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 205 -------ELDRAKEKLKKLLQEIMI----KVKKLEELEEELQELESKIE-------DLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred -------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHhhHHHHh
Q 003812 194 ENAKQEAQEHSNEIRK 209 (793)
Q Consensus 194 E~akrEaqehS~dl~K 209 (793)
.--..|+-..=+.+..
T Consensus 267 ~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 267 GFTFKEIEKLKEQLKL 282 (312)
T ss_pred CCCHHHHHHHHHHHHH
No 150
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=31.36 E-value=5e+02 Score=25.29 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q 003812 174 KRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR-KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEES 252 (793)
Q Consensus 174 k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~-Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~ 252 (793)
.+.++..+|+..+..-+..+ ||.+.+ +.+.. |.+.+..|.++..-....+.--+.+|+.+...-+.
T Consensus 10 s~~el~n~La~Le~slE~~K---------~S~~eL~kqkd~---L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~- 76 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEK---------TSQGELAKQKDQ---LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED- 76 (107)
T ss_dssp ----HHHHHHHHHHHHHHHH---------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHH---------hhHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34566777777776665442 232222 44443 45555555555444444444444444443333333
Q ss_pred HHHHH-HHHHHHHHH
Q 003812 253 VSFAQ-KLSLEIVKM 266 (793)
Q Consensus 253 ~~~~q-kLs~El~kl 266 (793)
--++- +|...+.+.
T Consensus 77 eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 77 EKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 22333 444444443
No 151
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=31.27 E-value=5.6e+02 Score=25.82 Aligned_cols=18 Identities=6% Similarity=0.180 Sum_probs=10.5
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 003812 218 VSNQRQLEAELGRAHRQV 235 (793)
Q Consensus 218 ~s~QrqlEaeL~rA~~~l 235 (793)
..+++..+.+-.+|+.+|
T Consensus 103 ~~A~~~Ie~Ek~~Al~el 120 (154)
T PRK06568 103 SDAIQLIQNQKSTASKEL 120 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666666655
No 152
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=31.22 E-value=3.4e+02 Score=23.36 Aligned_cols=82 Identities=27% Similarity=0.341 Sum_probs=51.3
Q ss_pred HhHHHHHHHHHHHHHHhhhhh-hhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHH
Q 003812 80 SQKLDAAEREIEELKKLRHED-AKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDME 158 (793)
Q Consensus 80 ~~kL~~AE~ei~eLKkrR~ED-AKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E 158 (793)
.+.+..++.+|..|..-+.+= ...+....|+.++.=..|..-...|...|..+..++..++..-+..-..|..+-.+.+
T Consensus 11 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 11 QQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666555433 1112122477778888888888899999999988888888765555555555555544
Q ss_pred HHH
Q 003812 159 LLV 161 (793)
Q Consensus 159 ~l~ 161 (793)
.+-
T Consensus 91 ~~e 93 (123)
T PF02050_consen 91 KLE 93 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 153
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.06 E-value=4.6e+02 Score=27.28 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 116 QSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (793)
Q Consensus 116 qsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (793)
+.|..|+..|.++|..+.+|+..++..+...-+.+..+-+++..|- ..+++...-+.++..=+..+-..-++.
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~----~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE----QQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 154
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=30.90 E-value=1.1e+03 Score=29.32 Aligned_cols=97 Identities=25% Similarity=0.408 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h
Q 003812 128 QIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQE----H 203 (793)
Q Consensus 128 qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqe----h 203 (793)
+|.-|..|++.++-.--..-..|+.+-.|+|.|+. +-.--+-.-.+|..-|+.+|-+-..|-|-.++|+.+ |
T Consensus 74 E~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~----ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~H 149 (739)
T PF07111_consen 74 ELRRLEEEVRALRETSLQQKMRLEAQAEELEALAR----AEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLH 149 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444444444443222223334444556665552 111112224567777788887777775555666654 2
Q ss_pred hHHH----HhhHHHHHHHHhhHHHHHHHH
Q 003812 204 SNEI----RKHKTAFIELVSNQRQLEAEL 228 (793)
Q Consensus 204 S~dl----~Khk~a~lEl~s~QrqlEaeL 228 (793)
-..| ..|.++...|.+.=+.||..|
T Consensus 150 qeql~~Lt~aHq~~l~sL~~k~~~Le~~L 178 (739)
T PF07111_consen 150 QEQLSSLTQAHQEALASLTSKAEELEKSL 178 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 366677777777776666555
No 155
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=30.72 E-value=4.3e+02 Score=30.64 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=51.8
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHh-
Q 003812 230 RAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQA- 308 (793)
Q Consensus 230 rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~A- 308 (793)
..+.++++.+.+|...+..-... +-+|-+=+.-||+| +.-|+.+..+..-+.+.+++..+...=+.-
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~k---VdDLQD~VE~LRkD---------V~~RgvRp~~~qle~v~kdi~~a~~~L~~m~ 266 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTK---VDDLQDLVEDLRKD---------VVQRGVRPSPKQLETVAKDISRASKELKKMK 266 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---------HHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---------HHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776554443333 44666677778877 456888999999999999987765543332
Q ss_pred ---HHHHHHHHHhhhhh
Q 003812 309 ---ELETERWKAASQSR 322 (793)
Q Consensus 309 ---E~E~erWkrlaE~r 322 (793)
..+.+.||++||.-
T Consensus 267 ~~i~~~kp~WkKiWE~E 283 (424)
T PF03915_consen 267 EYIKTEKPIWKKIWESE 283 (424)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHH
Confidence 24679999999984
No 156
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=30.48 E-value=7.7e+02 Score=27.18 Aligned_cols=180 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhhHHHhhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHhhh-----hchhhHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 003812 103 ANEKVVGIFAAQEQSWFSE-----RKQLRQQIGALINELRILDK-----KKDESISELNEKLKDMELLVRSKDRVLEEDE 172 (793)
Q Consensus 103 ANeKVv~IfAsheqsW~~E-----rKrLr~qI~al~~E~~~le~-----~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~ 172 (793)
+| .++..|-...-.++.. ..-|..|+..+.+++...+. +...-+-.+...+.-...-+..-..++...+
T Consensus 150 ~n-~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~ 228 (444)
T TIGR03017 150 AN-AFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQ 228 (444)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHH---HHHHHHHHhhHHH-HhhHHHHH---HHHhhHHHHHHHHHHHHHH
Q 003812 173 QKRKELEEKISIAEK-----------IAEELRE---NAKQEAQEHSNEI-RKHKTAFI---ELVSNQRQLEAELGRAHRQ 234 (793)
Q Consensus 173 ~k~keleekLa~aEk-----------~~~eLrE---~akrEaqehS~dl-~Khk~a~l---El~s~QrqlEaeL~rA~~~ 234 (793)
.+..++..++...+. ...+|+. .+..++++.+... .+|-...- ++..-+.++..++.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~ 308 (444)
T TIGR03017 229 AQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSS 308 (444)
T ss_pred HHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-------HhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 003812 235 VE-------ARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (793)
Q Consensus 235 l~-------a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (793)
+. +...+|..-++.......-......++..|.+|.+-...+...+|.|
T Consensus 309 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r 364 (444)
T TIGR03017 309 VGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQR 364 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 157
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=30.25 E-value=1.5e+02 Score=36.89 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 118 WFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE 194 (793)
Q Consensus 118 W~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE 194 (793)
=..|+.||..+|..+.+|+. .++.+|.-..++.-+....++.++.|..+++.+++..++...+|++
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~-----------~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLE-----------SYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777766666666544 4667777778887666677888888889999999998888877753
No 158
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=29.81 E-value=1.3e+03 Score=29.59 Aligned_cols=31 Identities=45% Similarity=0.626 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAK 197 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~ak 197 (793)
.++|+-.+.++++++||...+|--+-+ |+|+
T Consensus 670 ~q~eel~Ke~kElq~rL~~q~KkiDh~-ERA~ 700 (988)
T KOG2072|consen 670 RQIEELEKERKELQSRLQYQEKKIDHL-ERAK 700 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHH
Confidence 788888999999999999999988777 6664
No 159
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=29.73 E-value=84 Score=33.13 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hhchhhHHHHHHHH
Q 003812 120 SERKQLRQQIGALINELRILD---KKKDESISELNEKL 154 (793)
Q Consensus 120 ~ErKrLr~qI~al~~E~~~le---~~k~~~i~EL~~kL 154 (793)
.|..-|+++..-+.+||.-|+ +.|++|..||+++|
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888888889988888 46999999998886
No 160
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.95 E-value=84 Score=34.08 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=43.0
Q ss_pred HHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHhh
Q 003812 440 IESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQL 488 (793)
Q Consensus 440 ~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~~ 488 (793)
-|+.+|+++++.++.++..++-+|.+||-.+-.+..|.-.|++.|....
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3667888999999999999999999999999999999999999887654
No 161
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=28.94 E-value=19 Score=42.70 Aligned_cols=103 Identities=27% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhh----------chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 124 QLRQQIGALINELRILDKK----------KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELR 193 (793)
Q Consensus 124 rLr~qI~al~~E~~~le~~----------k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLr 193 (793)
.|+.++..|..|+..++.. .+..+.+|+.+..+....+.. -.+..++- -.+.++-..+.+...++
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~-a~~LrDEl---D~lR~~a~r~~klE~~v- 317 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEARE-ARALRDEL---DELREKADRADKLENEV- 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH---HHHHHHHHHHHHHHHHH-
Confidence 4566666666666655432 233444555554444433321 01111111 22333333333333333
Q ss_pred HHHHHHHHHhhHHHHhhHHHH----HHHHhhHHHHHHHHHHHH
Q 003812 194 ENAKQEAQEHSNEIRKHKTAF----IELVSNQRQLEAELGRAH 232 (793)
Q Consensus 194 E~akrEaqehS~dl~Khk~a~----lEl~s~QrqlEaeL~rA~ 232 (793)
++.|.-+.+ +.++++..... -.++.....||.+|.++.
T Consensus 318 e~YKkKLed-~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~ 359 (713)
T PF05622_consen 318 EKYKKKLED-LEDLKRQVKELEEDNAVLLETKAMLEEELKKAR 359 (713)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455555666 66676655544 245666778888887764
No 162
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.89 E-value=5.1e+02 Score=29.78 Aligned_cols=99 Identities=22% Similarity=0.221 Sum_probs=69.5
Q ss_pred chhhHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhh--
Q 003812 387 DGKRLEGWVRLEAEKYA---AVIEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRH-- 461 (793)
Q Consensus 387 ~~~~le~W~~~e~erya---~~Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~-- 461 (793)
+.-..-+||.+..-|-- +.-.+=-..-| |-+-=|||=|--.|=-+=.--.|+.+||++-+.|...|.+.+.
T Consensus 47 ~~iss~gwff~i~~re~qlk~aa~~llq~ki----rk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf 122 (401)
T PF06785_consen 47 SIISSLGWFFAIGRREKQLKTAAGQLLQTKI----RKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVF 122 (401)
T ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33447899998543211 11111111222 3333478888888877777778999999999999998887765
Q ss_pred -----hchhhHHHHHhhHHHHHHHHHHHHHhhh
Q 003812 462 -----DNMKLEALLFEREEELHSLKEQFISQLK 489 (793)
Q Consensus 462 -----~~~~lEall~~Re~El~sLk~ql~~~~~ 489 (793)
+.-+||+++...++|+.-|.-||.+...
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~ 155 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQ 155 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5567999999999999999998877654
No 163
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=28.89 E-value=1.8e+02 Score=33.99 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhcCCCC--------CCCcCCcc---chhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHhhhcCCCCCC
Q 003812 620 LKRLKQQLLMLERFTGKSG--------EDTESNDD---GIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHETGPEISP 688 (793)
Q Consensus 620 iKrLkQqll~LErl~g~~~--------e~~~~~~~---~~r~~~~~~sll~Kqv~RYQsL~~KiDdLCkRm~~sd~~~~~ 688 (793)
++||+-.--+||-+.++.+ ...+++-+ -|.+++..=+++.+-|.+|-.|++||+-..
T Consensus 8 vkRLE~a~~RLE~Isi~~~a~~~~~~~~s~~~~~~v~~~p~~i~Ayd~~i~~~l~~~~~lS~kIggdv------------ 75 (480)
T KOG2675|consen 8 VKRLESATSRLEGISITQPADAHRPKASSAASAGDVAAVPPSIRAYDDLISEPLAEYLKLSKKIGGDV------------ 75 (480)
T ss_pred HHHHHHHHHHhhhhhcCCchhccCCCCCCcccccccccCchHHHHHHHHHHhHHHHHHHHHHHhChhH------------
Confidence 6899999999999987721 22222111 455566667788899999999999996443
Q ss_pred CCchhhhcccchhhHHHHHHHHHHHHHHHH
Q 003812 689 EDSSTAKRRGDTKTLEHFLEETFQLQRYIV 718 (793)
Q Consensus 689 ~~s~~~r~~~~t~~l~~FLeEtFqLQry~v 718 (793)
.++.+-+...|++||++.
T Consensus 76 ------------~~~~~~v~~~F~s~R~~L 93 (480)
T KOG2675|consen 76 ------------ADVAEMVKSAFASQRAFL 93 (480)
T ss_pred ------------HHHHHHHHHHHHHHHHHH
Confidence 345577899999999885
No 164
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=28.86 E-value=1.7e+03 Score=30.71 Aligned_cols=309 Identities=22% Similarity=0.233 Sum_probs=167.8
Q ss_pred HHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--------------hhchhhHHHHHHHHHHH
Q 003812 92 ELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILD--------------KKKDESISELNEKLKDM 157 (793)
Q Consensus 92 eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le--------------~~k~~~i~EL~~kLkE~ 157 (793)
+|++.++-+.-.-+++.++-+.. -+......+|-++-.++..++.-|. ..+...+.+|..+|..+
T Consensus 151 ql~ss~~~~~e~e~r~~e~~s~~-vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~ 229 (1822)
T KOG4674|consen 151 QLKSSTKTLSELEARLQETQSED-VSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDL 229 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34455555555555666654443 3467777777777777776665555 34556789999998887
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHH---HHHHHH
Q 003812 158 ELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAEL---GRAHRQ 234 (793)
Q Consensus 158 E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL---~rA~~~ 234 (793)
..=...-.....--.++..+|+.++-..-..+..+++++.-.-.+..+++.-|+.-+=...+.=-++++++ -+|...
T Consensus 230 ~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~ 309 (1822)
T KOG4674|consen 230 KESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEE 309 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65443212333333666788888888888888888887765555555555544444423333333333222 222221
Q ss_pred -------HHHhHHHH-HHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Q 003812 235 -------VEARKEEL-DLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRR 306 (793)
Q Consensus 235 -------l~a~~~EL-~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK 306 (793)
+.....|. |.+.+.+.-...+..++-.+|..|...+++.-.-+++-+.
T Consensus 310 ~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~------------------------ 365 (1822)
T KOG4674|consen 310 LEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGE------------------------ 365 (1822)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcc------------------------
Confidence 12222222 3333333333334444444444444444443333333111
Q ss_pred HhHHHHHHHHHhhhhhhhhchhhhhhhhhhhhhhccCcCccccccccchhhhhhhhhccCCCCCCcCccccCcccccccc
Q 003812 307 QAELETERWKAASQSRHERHSLRSMFVSQANSRLAASSGAKGKTRSSATVECEHIELKKDSDVFSPLSDYYSAEGNEEQA 386 (793)
Q Consensus 307 ~AE~E~erWkrlaE~rher~slrSm~~~~~~s~l~~~s~~v~~~~~~~~~i~~~~~e~~e~~~~~p~~d~y~~~~~~~p~ 386 (793)
.||....+ ..+.+ .+.+ .++.|++++
T Consensus 366 ----------------------~~~~s~~~---a~~s~-~~~~-~~sLtk~ys--------------------------- 391 (1822)
T KOG4674|consen 366 ----------------------SSMVSEKA---ALASS-LIRP-GSSLTKLYS--------------------------- 391 (1822)
T ss_pred ----------------------cchhhhHH---HHHHh-hccc-chhHHHHHH---------------------------
Confidence 11111100 00000 0110 133333321
Q ss_pred chhhHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhc
Q 003812 387 DGKRLEGW---VRLEAEKYAAVIEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDN 463 (793)
Q Consensus 387 ~~~~le~W---~~~e~erya~~Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~ 463 (793)
.|..++.= |..+-+||+. .+..|-+..-.+-==|.-=|..+-.|=.+..-+-.+++.+++++..+..+-
T Consensus 392 ~~~~~qqqle~~~lele~~~~--------~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~ 463 (1822)
T KOG4674|consen 392 KYSKLQQQLESLKLELERLQN--------ILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKEL 463 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123332 2223344443 345666666666666666777788888888888888889999999999999
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHh
Q 003812 464 MKLEALLFEREEELHSLKEQFISQ 487 (793)
Q Consensus 464 ~~lEall~~Re~El~sLk~ql~~~ 487 (793)
+.|.+.+..+..|++.|.-+....
T Consensus 464 ~~l~~~~~~~~renk~l~~~~sdl 487 (1822)
T KOG4674|consen 464 ESLKKQLNDLERENKLLEQQISDL 487 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887764433
No 165
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=28.75 E-value=92 Score=31.90 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHH
Q 003812 118 WFSERKQLRQQIGALINELRILDK---KKDESISELNEKL 154 (793)
Q Consensus 118 W~~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kL 154 (793)
=-.||..|+.++.-+.+||.-|+. .|+++..+|+++|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346778888888888888888874 6888888888885
No 166
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.45 E-value=1.4e+03 Score=29.67 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=43.1
Q ss_pred HHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHH
Q 003812 406 IEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEAL 469 (793)
Q Consensus 406 Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEal 469 (793)
.-+.|..||+.--.++|..-|++.-.|--+=-.-..++-+..+...|++.+....+...++|.+
T Consensus 637 ~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~ 700 (1072)
T KOG0979|consen 637 EIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENL 700 (1072)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3356778888888899999888887775544444445555555556666666666666677765
No 167
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.32 E-value=5.3e+02 Score=24.62 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003812 176 KELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (793)
Q Consensus 176 keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (793)
..+...|...-.++.+....-.+|+..|+.++
T Consensus 27 ~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~ 58 (132)
T PF07926_consen 27 QSLREDLESQAKIAQEAQQKYERELVKHAEDI 58 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444445444444556666666443
No 168
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=27.90 E-value=1.1e+03 Score=28.20 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=32.9
Q ss_pred cccchhhHHHHHHHH--------HHHHHHHHHHHhhhhHHHHHHHhccchh
Q 003812 384 EQADGKRLEGWVRLE--------AEKYAAVIEKRHHLELEAFAEQMRMKDE 426 (793)
Q Consensus 384 ~p~~~~~le~W~~~e--------~erya~~Ie~rH~~EIeAF~eQmRlKDE 426 (793)
.+..|..|--|++.. ...|+..+.+=|..||..|.+.+|-+--
T Consensus 210 ~L~~ys~Li~~lK~~d~~~y~~L~~~Y~~~~~~ly~~e~~~~~~~~k~~~~ 260 (701)
T PF09763_consen 210 ELLPYSGLILWLKEVDPESYQALIKAYNSSMSKLYEREIRDFFEALKKSIS 260 (701)
T ss_pred HHHhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444677777887763 4588899999999999999998875443
No 169
>PRK12705 hypothetical protein; Provisional
Probab=27.10 E-value=1.1e+03 Score=27.98 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 003812 616 VSYKLKRLKQQLLMLERFT 634 (793)
Q Consensus 616 VSyKiKrLkQqll~LErl~ 634 (793)
...-+++|++ ||.++
T Consensus 426 ~e~yv~rL~~----le~i~ 440 (508)
T PRK12705 426 LDEYVQRLEE----LEQIA 440 (508)
T ss_pred HHHHHHHHHH----HHHHh
Confidence 3466888887 78883
No 170
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=27.10 E-value=1e+03 Score=27.57 Aligned_cols=142 Identities=10% Similarity=0.101 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhhhhhh-HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhchhhhhhh
Q 003812 255 FAQKLSLEIVKMRKDLDQK-DKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELETERWKAASQSRHERHSLRSMFV 333 (793)
Q Consensus 255 ~~qkLs~El~klRkd~e~K-DkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~erWkrlaE~rher~slrSm~~ 333 (793)
+.++|..++...+.+++.+ .++|..-+. .||.--+..|....++=+.=|.-...|.......|+.|.|-....
T Consensus 342 ~~~~l~~~l~~~~~e~~~~~~~~i~~~v~------~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~ 415 (582)
T PF09731_consen 342 HEEHLKNELREQAIELQREFEKEIKEKVE------QERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVD 415 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666666444 444544443 366666666666666544444445778777777777775544444
Q ss_pred hhhhhh-hccCcCccccccccchhhhhhhhhccCCCCCCcCccccCcccccccc-chhhHHHHHHHHHH--HHHHHH
Q 003812 334 SQANSR-LAASSGAKGKTRSSATVECEHIELKKDSDVFSPLSDYYSAEGNEEQA-DGKRLEGWVRLEAE--KYAAVI 406 (793)
Q Consensus 334 ~~~~s~-l~~~s~~v~~~~~~~~~i~~~~~e~~e~~~~~p~~d~y~~~~~~~p~-~~~~le~W~~~e~e--rya~~I 406 (793)
..-++. .+.+.. .+ ...+.....+.. +.++.......+.+++......+ +...|.+||..++. +-+.+|
T Consensus 416 ~l~~~l~~~~~~~-~~--p~~~el~~l~~~-~~~d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~~~l~ 488 (582)
T PF09731_consen 416 ALKSALDSGNAGS-PR--PFEDELRALKEL-APDDELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRRASLV 488 (582)
T ss_pred HHHHHHHcCCCcC-CC--CHHHHHHHHHHh-CCCChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 433332 111100 00 010111111111 22222222233345555443233 78889999998776 566666
No 171
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=26.99 E-value=1.2e+03 Score=28.23 Aligned_cols=46 Identities=35% Similarity=0.439 Sum_probs=27.5
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003812 78 KLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDK 141 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~ 141 (793)
.|..+|.....+..+|.+ +|. ....+-..|+.+|..+..++...+.
T Consensus 140 ~lQ~qlE~~qkE~eeL~~-------~~~-----------~Le~e~~~l~~~v~~l~~eL~~~~e 185 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLK-------ENE-----------QLEEEVEQLREEVERLEAELEQEEE 185 (546)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666553 332 2334447788888888877777554
No 172
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=26.36 E-value=22 Score=43.38 Aligned_cols=55 Identities=27% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHH
Q 003812 428 LEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKE 482 (793)
Q Consensus 428 LEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ 482 (793)
.+.++-++..+|..+..|+++++.+...+.++..-.-.+|+=+.+=.+++..|..
T Consensus 597 ~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~ 651 (859)
T PF01576_consen 597 REELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTS 651 (859)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556777788999999999999999999999988888888877666665555543
No 173
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.24 E-value=6.2e+02 Score=24.70 Aligned_cols=87 Identities=28% Similarity=0.396 Sum_probs=59.6
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHH
Q 003812 77 CKLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKD 156 (793)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE 156 (793)
..+..+|...+..|+..|-.+.+ |..+|..|+.....|..+..+ ...++.+|+.++.|
T Consensus 12 ~el~n~La~Le~slE~~K~S~~e------------------L~kqkd~L~~~l~~L~~q~~s----~~qr~~eLqaki~e 69 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGE------------------LAKQKDQLRNALQSLQAQNAS----RNQRIAELQAKIDE 69 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH------------------HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 46778899999998887766554 566777777777766666665 45678888888887
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 157 MELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (793)
Q Consensus 157 ~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (793)
...= ++.++.-.-+++.+|.++++.-.-|
T Consensus 70 a~~~-------le~eK~ak~~l~~r~~k~~~dka~l 98 (107)
T PF09304_consen 70 ARRN-------LEDEKQAKLELESRLLKAQKDKAIL 98 (107)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5433 3443333448889998888765444
No 174
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=26.20 E-value=4.1e+02 Score=23.85 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCh
Q 003812 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDT 288 (793)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~ 288 (793)
..|.++...+...-.--...++.-++++...+++.+|...+.--+..=.++|+.+-|+...|+
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~ 70 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDR 70 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444333333333334444567777778888888888888888888888888777664
No 175
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=25.98 E-value=6.7e+02 Score=24.99 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=3.2
Q ss_pred hhHHHHH
Q 003812 117 SWFSERK 123 (793)
Q Consensus 117 sW~~ErK 123 (793)
++..+|+
T Consensus 54 ~~L~~R~ 60 (184)
T PRK13455 54 GMLDKRA 60 (184)
T ss_pred HHHHHHH
Confidence 4444443
No 176
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.96 E-value=1.2e+03 Score=27.77 Aligned_cols=145 Identities=14% Similarity=0.261 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 116 QSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELREN 195 (793)
Q Consensus 116 qsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~ 195 (793)
+.|..+...+..++..+..+...+++.. .+|+..+. ..++..+++++..+..- +.
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~l~~~le-----------------~~~~~~~ek~~~l~~~~----~~ 110 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADL----REVTTRME-----------------AAQQHADDKIRQMINSE----QR 110 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-----------------HHHHHHHHHHHHHHHHH----HH
Confidence 5677777777777776666654443221 12222221 12223344555444443 33
Q ss_pred HHHHHHHhhHHHHhhHH-HHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------hhhhhHHHHHHHHHHH
Q 003812 196 AKQEAQEHSNEIRKHKT-AFIELVSNQRQLEAELGRAHRQVEARKEELDLVLE-----------QKEESVSFAQKLSLEI 263 (793)
Q Consensus 196 akrEaqehS~dl~Khk~-a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e-----------~kee~~~~~qkLs~El 263 (793)
++.+-.+.++++-.++. .|. ..||..|+.-|.=-..+|+.-+..++.+-. +...-...-++++.|.
T Consensus 111 L~~~F~~LA~~ile~k~~~f~--~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea 188 (475)
T PRK10361 111 LSEQFENLANRIFEHSNRRVD--EQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEA 188 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555533332 222 334444554444333444433333332221 1112222334566666
Q ss_pred HHHhhhhh--hh------HHHHHHHHhhccCC
Q 003812 264 VKMRKDLD--QK------DKILSAMLRKSKSD 287 (793)
Q Consensus 264 ~klRkd~e--~K------DkilSaMLrkSklD 287 (793)
..|-+=+- .| +.+|..+|+.|.+.
T Consensus 189 ~nLt~ALkgd~K~rG~WGE~qLerILE~sGL~ 220 (475)
T PRK10361 189 INLTRALKGDNKTQGNWGEVVLTRVLEASGLR 220 (475)
T ss_pred HHHHHHHcCCCCcCcchHHHHHHHHHHHhCCC
Confidence 66666552 24 56677777766654
No 177
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=25.72 E-value=1.4e+03 Score=28.76 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=15.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003812 110 IFAAQEQSWFSERKQLRQQIGALINELRILD 140 (793)
Q Consensus 110 IfAsheqsW~~ErKrLr~qI~al~~E~~~le 140 (793)
--|+|+|+=..-.--+++++.+|..+...|+
T Consensus 492 aaaarErrAsE~eas~r~R~~ALEara~ALe 522 (828)
T PF04094_consen 492 AAAARERRASEAEASLRAREEALEARAKALE 522 (828)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3345555544444445555555555555443
No 178
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=25.59 E-value=9.8e+02 Score=26.81 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhch
Q 003812 81 QKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKD 144 (793)
Q Consensus 81 ~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~ 144 (793)
-|.......+.+++..|. .+...=.+|...|..|+.+..-+.+.+.+++.+++
T Consensus 13 ~K~~~lk~~~~e~~ekR~-----------El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rd 65 (294)
T COG1340 13 LKRKQLKEEIEELKEKRD-----------ELRKEASELAEKRDELNAKVRELREKAQELREERD 65 (294)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666662 23333456777788888888877777777665443
No 179
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.54 E-value=1.5e+03 Score=28.99 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHhhHHHH
Q 003812 176 KELEEKISIAEKIAEELRENA--KQEAQEHSNEIRKHKTAF 214 (793)
Q Consensus 176 keleekLa~aEk~~~eLrE~a--krEaqehS~dl~Khk~a~ 214 (793)
.-+..-+..-|.+++.+.+.+ ...+|+|.+++-+-++.+
T Consensus 782 ~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~ 822 (970)
T KOG0946|consen 782 GSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQI 822 (970)
T ss_pred chhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 334444445555555555522 234566666665444433
No 180
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.46 E-value=59 Score=23.91 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.1
Q ss_pred HHHHHhhhhhhhhhhhHHhh
Q 003812 441 ESKRLQSHVEGLNHETSQLR 460 (793)
Q Consensus 441 E~~rLrS~~e~L~~~lsq~~ 460 (793)
|+.++|++|.+|++.|+.-+
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999988654
No 181
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=25.18 E-value=1.3e+02 Score=28.46 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 167 VLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 167 a~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
++.++...|..++.....++.-.++|-..+=.||-+-.++=++.+.++ .....+|+.+|.-+...+++-..+|.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~---e~k~~~le~~l~e~~~~l~~lq~qL~ 75 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAAL---EEKNEQLEKQLKEKEALLESLQAQLK 75 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCTTHHCHCCCHCTSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888998888887777777777666666655444 23334566666666655555555554
No 182
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.98 E-value=1.3e+03 Score=27.95 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=44.7
Q ss_pred HHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 003812 198 QEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLD 271 (793)
Q Consensus 198 rEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e 271 (793)
+..-|...-++|.++-+-=+..-=|+|--+++...-.|+.+=+..|.++=+.-+++..+.+.--=|+.||-.-+
T Consensus 491 ~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~ 564 (594)
T PF05667_consen 491 RRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCS 564 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 33444455556666665444444555667777777777777777777765555555555555555666665443
No 183
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.92 E-value=6.5e+02 Score=24.49 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 003812 222 RQLEAELGRAH 232 (793)
Q Consensus 222 rqlEaeL~rA~ 232 (793)
.+.+..+..|.
T Consensus 100 ~ea~~~~~~a~ 110 (164)
T PRK14471 100 VEGDKMIEQAK 110 (164)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 184
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.68 E-value=79 Score=32.25 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 003812 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILS 278 (793)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilS 278 (793)
.+|..|+.|.+.-.=.+.||+ -||.--..+|+|-+|+--|++|+.-+|++-.
T Consensus 4 D~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467888888888888888885 4777788899999999999999977777643
No 185
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.60 E-value=1.2e+03 Score=27.42 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=13.8
Q ss_pred HHHHhhHHHHH-HHHhhHHHHH
Q 003812 205 NEIRKHKTAFI-ELVSNQRQLE 225 (793)
Q Consensus 205 ~dl~Khk~a~l-El~s~QrqlE 225 (793)
+-|||+|.... ||...+||+|
T Consensus 352 aaLrkerd~L~keLeekkrele 373 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELE 373 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776 6666666655
No 186
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=24.54 E-value=1.6e+03 Score=28.94 Aligned_cols=205 Identities=19% Similarity=0.265 Sum_probs=97.4
Q ss_pred hHHhHHHHHHHHHHHHHHhhhh---hhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHH
Q 003812 78 KLSQKLDAAEREIEELKKLRHE---DAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKL 154 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~E---DAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kL 154 (793)
...+++....+++..||.-|.- |+----||+ -.|=++|-+||-++.-++-..+. |-+- +.+++
T Consensus 288 qkeelVk~~qeeLd~lkqt~t~a~gdseqatkyl----------h~enmkltrqkadirc~LlEarr-k~eg---fddk~ 353 (1265)
T KOG0976|consen 288 QKEELVKELQEELDTLKQTRTRADGDSEQATKYL----------HLENMKLTRQKADIRCALLEARR-KAEG---FDDKL 353 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-hhcc---hhHHH
Confidence 3344555666677777766542 222222332 24566777777776666544331 2222 22222
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 003812 155 KDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQ 234 (793)
Q Consensus 155 kE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~ 234 (793)
.|+|.=- |.+..+. .-|.+++..++..-.-|.+ +..|.|+.+.++..|.--|--...-..-.-.||.+|...
T Consensus 354 ~eLEKkr---d~al~dv----r~i~e~k~nve~elqsL~~-l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ek 425 (1265)
T KOG0976|consen 354 NELEKKR---DMALMDV----RSIQEKKENVEEELQSLLE-LQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEK 425 (1265)
T ss_pred HHHHHHH---HHHHHhH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Confidence 2222211 1111111 2233333333322222211 234555555555555444423323333333678888888
Q ss_pred HHHhHHHHHHHHHhhhhhHHHHHHH-HHHHHHHhhhhhhhHHHHHHHHhhccCCh--------HHHHHHHHHHHHHHHHH
Q 003812 235 VEARKEELDLVLEQKEESVSFAQKL-SLEIVKMRKDLDQKDKILSAMLRKSKSDT--------AEKQMLLKEVKISKAKR 305 (793)
Q Consensus 235 l~a~~~EL~sv~e~kee~~~~~qkL-s~El~klRkd~e~KDkilSaMLrkSklD~--------~EKemLlrEvk~~kAkr 305 (793)
+|-.++++--+ + -..+..+-| +.+=.++|.-++|-.+||..+ +..+|. .|-+||- ....+.++
T Consensus 426 ld~mgthl~ma-d---~Q~s~fk~Lke~aegsrrraIeQcnemv~ri--r~l~~sle~qrKVeqe~emlK--aen~rqak 497 (1265)
T KOG0976|consen 426 LDLMGTHLSMA-D---YQLSNFKVLKEHAEGSRRRAIEQCNEMVDRI--RALMDSLEKQRKVEQEYEMLK--AENERQAK 497 (1265)
T ss_pred HHHHhHHHHHH-H---HHHhhHHHHHHhhhhhHhhHHHHHHHHHHHH--HHHhhChhhhcchHHHHHHHH--HHHHHHHH
Confidence 88888887321 1 111112222 234457888889988888765 223333 3334443 33455667
Q ss_pred HHhHHHH
Q 003812 306 RQAELET 312 (793)
Q Consensus 306 K~AE~E~ 312 (793)
|.++++-
T Consensus 498 kiefmkE 504 (1265)
T KOG0976|consen 498 KIEFMKE 504 (1265)
T ss_pred HHHHHHH
Confidence 7777664
No 187
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.38 E-value=6.7e+02 Score=24.42 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHH
Q 003812 123 KQLRQQIGALINELRILDKKKDESISELNEKLKDMELL 160 (793)
Q Consensus 123 KrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l 160 (793)
+++--++..+..++..+.+.++..-.|+=+...+.+.+
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444444444443
No 188
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.84 E-value=2.9e+02 Score=27.53 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 003812 257 QKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (793)
Q Consensus 257 qkLs~El~klRkd~e~KDkilSaMLrkS 284 (793)
.+++.|+..+.++++.+++-+.+|=+++
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888777777665544
No 189
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=23.67 E-value=7.3e+02 Score=24.64 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 003812 257 QKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (793)
Q Consensus 257 qkLs~El~klRkd~e~KDkilSaMLrkS 284 (793)
..+...|..+..+ +-+ .+|..|+..+
T Consensus 88 ~~a~~~l~~~~~~-~Y~-~~l~~li~~a 113 (198)
T PRK03963 88 EAVRERLAELPED-EYF-ETLKALTKEA 113 (198)
T ss_pred HHHHHHHHhhhhh-hHH-HHHHHHHHHH
Confidence 3445556666666 344 4666665554
No 190
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=23.59 E-value=8.6e+02 Score=27.26 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HhhHHH-H--HHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 174 KRKELEEKISIAEKIAEELRENAKQEAQEHSNEI------RKHKTA-F--IELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 174 k~keleekLa~aEk~~~eLrE~akrEaqehS~dl------~Khk~a-~--lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
|.....+||+.+..--++|..--.-|.++-..+| +-..+- | ..|.+.+++-|+|+..|....+..+-.|.
T Consensus 36 keq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~lLk 114 (291)
T KOG4466|consen 36 KEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKKKLLK 114 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666542112222222222 211111 1 46778899999999999888887777765
No 191
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.48 E-value=1.5e+03 Score=28.09 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=66.0
Q ss_pred HHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHh
Q 003812 206 EIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDL---DQKDKILSAMLR 282 (793)
Q Consensus 206 dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~---e~KDkilSaMLr 282 (793)
.||-|.+-+-|...-+ ..+.+--+++.+...=.+.+..+-..+...++.|..+.++|+.+. +.|-+||.+.++
T Consensus 62 ~l~iN~e~l~ef~~i~----~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~ 137 (655)
T KOG3758|consen 62 LLKINEEFLKEFKEIK----RRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLD 137 (655)
T ss_pred HHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544443554444 445566677888888888888888899999999999999999874 679999999999
Q ss_pred hccCChHHHHHH
Q 003812 283 KSKSDTAEKQML 294 (793)
Q Consensus 283 kSklD~~EKemL 294 (793)
+-.+..+|-.-|
T Consensus 138 ~fqLs~~E~~~L 149 (655)
T KOG3758|consen 138 NFQLSSEELDLL 149 (655)
T ss_pred hcccChHHHHHH
Confidence 999999887543
No 192
>PTZ00121 MAEBL; Provisional
Probab=23.41 E-value=2.1e+03 Score=29.85 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhh
Q 003812 711 FQLQRYIVSTGQ 722 (793)
Q Consensus 711 FqLQry~v~TgQ 722 (793)
|.-+-|....|-
T Consensus 2014 fS~~~YfAggGi 2025 (2084)
T PTZ00121 2014 FSNMAYFAGAGI 2025 (2084)
T ss_pred cccceeeccccH
Confidence 333444444443
No 193
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.39 E-value=1.2e+03 Score=27.22 Aligned_cols=85 Identities=21% Similarity=0.426 Sum_probs=53.3
Q ss_pred HHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---chhhHHHHHHHHHHHHHHHhhhhhh
Q 003812 91 EELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK---KDESISELNEKLKDMELLVRSKDRV 167 (793)
Q Consensus 91 ~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~---k~~~i~EL~~kLkE~E~l~~~kdka 167 (793)
.+|+..+.+.++-|.++..+ ..++.+|..+|..+..++..++.. -...+.++++.|.+.+..+. +
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~--------~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~----~ 105 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQ--------QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN----A 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH----H
Confidence 55566666666666555544 245677888888888888877753 34456667777777777664 3
Q ss_pred hHHH-HHHHHHHHHHHHHHHH
Q 003812 168 LEED-EQKRKELEEKISIAEK 187 (793)
Q Consensus 168 ~Eee-~~k~keleekLa~aEk 187 (793)
++.. +..+..|.+-|+++-.
T Consensus 106 l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 106 LEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 3333 3444666777776655
No 194
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=23.36 E-value=27 Score=41.38 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHhhhhhhhhhhhHHh-hhhchhhHHHHHhhHHHHHHHHHHHHH
Q 003812 434 RLLSMEIESKRLQSHVEGLNHETSQL-RHDNMKLEALLFEREEELHSLKEQFIS 486 (793)
Q Consensus 434 rllsmE~E~~rLrS~~e~L~~~lsq~-~~~~~~lEall~~Re~El~sLk~ql~~ 486 (793)
++..+..|..+++..|+.+..++... ......|+..|..++.++.+..+.+..
T Consensus 548 ~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~ 601 (713)
T PF05622_consen 548 KLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKK 601 (713)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Confidence 34455566677777777777777655 666677888888888888877665543
No 195
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=23.30 E-value=3.5e+02 Score=26.74 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=20.4
Q ss_pred HHHHhhh-hchhhHHHHHHHHHHHHHHHh
Q 003812 135 ELRILDK-KKDESISELNEKLKDMELLVR 162 (793)
Q Consensus 135 E~~~le~-~k~~~i~EL~~kLkE~E~l~~ 162 (793)
=+|+|++ .++-.+..|++-++-...++.
T Consensus 10 n~R~lra~~re~~~e~Lee~~ekl~~vv~ 38 (134)
T PRK10328 10 NIRTLRAMAREFSIDVLEEMLEKFRVVTK 38 (134)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3566665 467788888888887777776
No 196
>PRK09039 hypothetical protein; Validated
Probab=22.97 E-value=1.1e+03 Score=26.31 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 003812 240 EELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSA 279 (793)
Q Consensus 240 ~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSa 279 (793)
.+|......-.+....++.|..+|+-||..+..=+.-|.+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444566666677777777777765444444443
No 197
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.67 E-value=5e+02 Score=28.52 Aligned_cols=50 Identities=30% Similarity=0.279 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003812 151 NEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHS 204 (793)
Q Consensus 151 ~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS 204 (793)
++-.+|++-|+ +..++-+.+-.+..++|...+.--+.|.|+.++-.-+++
T Consensus 145 ~E~~~EkeeL~----~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~ 194 (290)
T COG4026 145 EELQKEKEELL----KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY 194 (290)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 33344455555 345555555666677777777766677666665555544
No 198
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.55 E-value=7.6e+02 Score=24.41 Aligned_cols=16 Identities=0% Similarity=0.152 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHH
Q 003812 249 KEESVSFAQKLSLEIV 264 (793)
Q Consensus 249 kee~~~~~qkLs~El~ 264 (793)
.+.+..++.+...++.
T Consensus 156 ~~~~~~li~~~i~~l~ 171 (175)
T PRK14472 156 ADKQKKVVDSMIQDLS 171 (175)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3556666666666654
No 199
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=22.49 E-value=3.1e+02 Score=33.51 Aligned_cols=136 Identities=24% Similarity=0.281 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCcCCccchhhH-HHHHHHHHHHhhhhhhhhh-------cHHHHHHHhhhcCCCCCC
Q 003812 617 SYKLKRLKQQLLMLERFTGKSGEDTESNDDGIKGL-LSLISLLNKQVGRYQSLQG-------KIDDICKRLHETGPEISP 688 (793)
Q Consensus 617 SyKiKrLkQqll~LErl~g~~~e~~~~~~~~~r~~-~~~~sll~Kqv~RYQsL~~-------KiDdLCkRm~~sd~~~~~ 688 (793)
|.-.|..-|=|.-|+.+ |+.=.+.=...-|-+++ .++-+++..-|++--.|.+ ..-|||+||-+..|..
T Consensus 567 ssa~klVrQcL~qLkll-~~vw~~vLpe~vYck~mc~Llnt~~~elir~V~tl~Disa~da~eL~dLik~vL~~~p~v-- 643 (719)
T KOG2163|consen 567 SSADKLVRQCLLQLKLL-AKVWREVLPEVVYCKVMCSLLNTLLDELIRHVVTLSDISANDANELADLIKRVLEVVPNV-- 643 (719)
T ss_pred ccHHHHHHHHHHHHHHH-HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHHHHHHHHHHhhhhh--
Confidence 34467778888888888 66322222222244553 3344566666777766664 4568999998887643
Q ss_pred CCchhhhcccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccccccccccccccccchhhhHHHHHHHHHHHhh
Q 003812 689 EDSSTAKRRGDTKTLEHFLEETFQLQRYIVSTGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQR 766 (793)
Q Consensus 689 ~~s~~~r~~~~t~~l~~FLeEtFqLQry~v~TgQKlme~Qs~i~~~~~~~~~~~~~~~~~d~~Rf~d~ir~lf~evQR 766 (793)
|+..++|+.---.+.+=|.+|+-+---|--||+|-++-+.|--- =-+.|.-.---+.||+||++-|+
T Consensus 644 -----fa~~~e~~et~v~v~~w~pl~el~~mL~asLmeIt~rW~dgkGp------laa~fsrsEVk~lIkALFqDs~w 710 (719)
T KOG2163|consen 644 -----FAYKEETKETDVCVREWFPLNELVFMLGASLMEITHRWFDGKGP------LAAHFSRSEVKGLIKALFQDSQW 710 (719)
T ss_pred -----hcChhhccCccccHHHhccHHHHHHHhCchHhHHHHHHhcCCcc------HHhhccHHHHHHHHHHHhhchHH
Confidence 44445566566788999999999999999999999887665422 22345555567889999999865
No 200
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=22.33 E-value=6.5e+02 Score=23.59 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHHhhHHHHHHH
Q 003812 150 LNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI--ELVSNQRQLEAE 227 (793)
Q Consensus 150 L~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l--El~s~QrqlEae 227 (793)
+..-|.+-+..+. ..+.+.+..+.+.+..++.++..-.+. +.++++...+.+..-+... -+..++.+++..
T Consensus 30 i~~~l~~R~~~I~---~~l~~Ae~~~~ea~~~~~~~e~~L~~a----~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~ 102 (140)
T PRK07353 30 VGKVVEEREDYIR---TNRAEAKERLAEAEKLEAQYEQQLASA----RKQAQAVIAEAEAEADKLAAEALAEAQAEAQAS 102 (140)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 455666666677777776666655444 3344433333333222222 355666777777
Q ss_pred HHHHHHHHHHhHHHH
Q 003812 228 LGRAHRQVEARKEEL 242 (793)
Q Consensus 228 L~rA~~~l~a~~~EL 242 (793)
+..|..++..-+...
T Consensus 103 ~~~a~~~i~~e~~~a 117 (140)
T PRK07353 103 KEKARREIEQQKQAA 117 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766655544
No 201
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.27 E-value=8.9e+02 Score=25.93 Aligned_cols=55 Identities=27% Similarity=0.290 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003812 81 QKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINE 135 (793)
Q Consensus 81 ~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E 135 (793)
+.|...|.++.+.+.+...--+.+......+..+++......+.+..+|..|...
T Consensus 197 ~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ek 251 (297)
T PF02841_consen 197 QQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEK 251 (297)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666655444333333344444444455555555555555555444433
No 202
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.13 E-value=1e+03 Score=25.71 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH-HHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhH
Q 003812 175 RKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAF-IELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESV 253 (793)
Q Consensus 175 ~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~-lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~ 253 (793)
.-+|-.+-..-...+--||+-.+.|++-|. -|.++. ||+..-+..+| ++.++.++..-+
T Consensus 61 ~~eLm~r~~~Y~~~vrslR~~fr~Ev~r~~----e~~~g~~ie~~~e~eaaE----------------~~el~a~N~a~N 120 (227)
T KOG4691|consen 61 FFELMERYQHYRQTVRSLRMEFRSEVQRVH----EARAGVLIERKAEKEAAE----------------HRELMAWNQAEN 120 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchhHHHhhhhhHHHH----------------HHHHHHHhHHHH
Confidence 356666777777888888888888888766 677765 47766665544 333333333222
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 254 SFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELETE 313 (793)
Q Consensus 254 ~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~e 313 (793)
.-..++. +.++.+|-..+...|. +.+.++..--+|.++|||.|--
T Consensus 121 ~~~~~~R--~~Rla~~~~E~~~~i~-------------ee~~~~~e~~~a~k~qae~eVl 165 (227)
T KOG4691|consen 121 RRLHELR--IARLAQEEREQEQRIA-------------EEQARKAEEVQAWKQQAEREVL 165 (227)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 3455555444433332 3455666667788888887653
No 203
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.01 E-value=3.4e+02 Score=24.06 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=36.2
Q ss_pred HHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHh
Q 003812 433 WRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQ 487 (793)
Q Consensus 433 wrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~ 487 (793)
-|+..+|+-++-..--|+.||.-|++..+....|. ..++.|.++|...
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~-------~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLR-------DHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 47788888888888889999999888887765554 3456677777654
No 204
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.86 E-value=5.9e+02 Score=26.07 Aligned_cols=58 Identities=36% Similarity=0.476 Sum_probs=29.7
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003812 78 KLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILD 140 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le 140 (793)
.+..++..+..++.+++....+ ..+++...-.+.+.+ .||..+..++..|..++..+.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~---l~~~i~~~~~~r~~~--~eR~~~l~~l~~l~~~~~~l~ 123 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEE---LEEKIEEAKKGREES--EEREELLEELEELKKELKELK 123 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555444443322 222333333333333 777778777777777666554
No 205
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.85 E-value=4.7e+02 Score=22.35 Aligned_cols=62 Identities=27% Similarity=0.489 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 120 SERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (793)
Q Consensus 120 ~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (793)
.|..||..++.-+.+++ .-++.+|.--.|+.-.-...++.++.+..++...+..++..-..|
T Consensus 4 ~E~~rL~Kel~kl~~~i-----------~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEI-----------ERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555554444 445667777777775555666777777788888777776655444
No 206
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.82 E-value=8.8e+02 Score=27.90 Aligned_cols=18 Identities=50% Similarity=0.619 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003812 123 KQLRQQIGALINELRILD 140 (793)
Q Consensus 123 KrLr~qI~al~~E~~~le 140 (793)
..|+.+|..+.+++..++
T Consensus 74 ~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 74 AELRKQIRELEAELRDLE 91 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 207
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=21.79 E-value=4.4e+02 Score=28.82 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 003812 123 KQLRQQIGALINELRILDK 141 (793)
Q Consensus 123 KrLr~qI~al~~E~~~le~ 141 (793)
+.|++++..+..+++.|..
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4688888888888888875
No 208
>PLN02943 aminoacyl-tRNA ligase
Probab=21.63 E-value=2.6e+02 Score=35.03 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 119 FSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE 194 (793)
Q Consensus 119 ~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE 194 (793)
..|+.||..+|..+.+|+ ..++.+|.-..++.-.....++.++.|..+++++|...+.....|++
T Consensus 888 ~~E~~rL~K~l~klekei-----------~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEY-----------DALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666555554 44667777777877656667777788888888888888777766653
No 209
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.62 E-value=1.4e+03 Score=27.01 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 003812 291 KQMLLKEVKISKAKRRQAELETERWKAA 318 (793)
Q Consensus 291 KemLlrEvk~~kAkrK~AE~E~erWkrl 318 (793)
...+-..+......-..|....+.|+..
T Consensus 399 q~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555556777654
No 210
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.04 E-value=7.3e+02 Score=25.05 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003812 108 VGIFAAQEQSWFSERKQLRQQIGALINELRILDK 141 (793)
Q Consensus 108 v~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~ 141 (793)
+.||.++ .+|-.++..+..+...+..
T Consensus 20 ~~li~ay--------~~L~d~~~~l~~~~~~l~~ 45 (194)
T PF08614_consen 20 AELIDAY--------NRLADRTSLLKAENEQLQP 45 (194)
T ss_dssp ----------------------------------
T ss_pred ccccccc--------ccccccccccccccccccc
Confidence 4566666 6777788777777766654
No 211
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=20.97 E-value=32 Score=42.01 Aligned_cols=130 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHH
Q 003812 177 ELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFA 256 (793)
Q Consensus 177 eleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~ 256 (793)
+++-+|..=+.-.+++|-...+.+-..-+.|.-++..=-+++...+.||.+|+-.-.+++.++.... +..-..
T Consensus 504 e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~-------e~~k~~ 576 (859)
T PF01576_consen 504 EIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANE-------EAQKQL 576 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH-------HHHHHH
Confidence 3334444444444445544444444444444333333335566666777777666666666654333 333333
Q ss_pred HHHHHHHHHHhhhhhhhHHHH-------HHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 257 QKLSLEIVKMRKDLDQKDKIL-------SAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELETE 313 (793)
Q Consensus 257 qkLs~El~klRkd~e~KDkil-------SaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~e 313 (793)
.++...|.-|+.++++--... ..+-++.+.=..|.+.+--.+..+...|++||.|.+
T Consensus 577 kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~ 640 (859)
T PF01576_consen 577 KKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELD 640 (859)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555432222 234455566667788888888888888888888763
No 212
>smart00338 BRLZ basic region leucin zipper.
Probab=20.93 E-value=1.7e+02 Score=24.53 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHH
Q 003812 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEA 468 (793)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEa 468 (793)
+-.+|.++..|.+..+.|..+++.++.++..|..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544443
No 213
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=20.87 E-value=7e+02 Score=23.34 Aligned_cols=77 Identities=27% Similarity=0.275 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003812 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLV 245 (793)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv 245 (793)
.....-..+.+..|..+..-+.++.+.|+.++.....++. -+.++---+..++.+.|.+-.+|..++..-=..|..+
T Consensus 6 ~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~ 84 (103)
T PRK08404 6 KEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVK 84 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666777777777777777777777777666653 4445555677778888888888777775555555433
No 214
>smart00338 BRLZ basic region leucin zipper.
Probab=20.86 E-value=1.3e+02 Score=25.14 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred hhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHH
Q 003812 446 QSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQF 484 (793)
Q Consensus 446 rS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql 484 (793)
+.++++|+.++..+..+|..|.+-+..=..|+..|+.++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888888888888888887777778888887765
No 215
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=20.86 E-value=1.4e+03 Score=26.78 Aligned_cols=43 Identities=30% Similarity=0.331 Sum_probs=28.5
Q ss_pred hhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 003812 96 LRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDE 145 (793)
Q Consensus 96 rR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~ 145 (793)
+-..||+...-|+-. .-.||.+|.|||..-..+....+..+++
T Consensus 129 ~haqdaaeGDDlt~~-------LEKEReqL~QQiEFe~~e~kK~E~~k~K 171 (561)
T KOG1103|consen 129 AHAQDAAEGDDLTAH-------LEKEREQLQQQIEFEIEEKKKAEIAKDK 171 (561)
T ss_pred HHhhhhhccchHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555532 3468999999999887777776655444
No 216
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=20.82 E-value=1.4e+03 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003812 113 AQEQSWFSERKQLRQQIGALINELRI 138 (793)
Q Consensus 113 sheqsW~~ErKrLr~qI~al~~E~~~ 138 (793)
.....|..+-+.-...+..|.+++..
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~~~ 236 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEELEA 236 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777766666677777776633
No 217
>PTZ00121 MAEBL; Provisional
Probab=20.79 E-value=2.3e+03 Score=29.44 Aligned_cols=9 Identities=11% Similarity=0.471 Sum_probs=3.8
Q ss_pred HHHhhhcCC
Q 003812 676 CKRLHETGP 684 (793)
Q Consensus 676 CkRm~~sd~ 684 (793)
|.-|..+-+
T Consensus 1954 C~~m~~~is 1962 (2084)
T PTZ00121 1954 CDYMKDNIS 1962 (2084)
T ss_pred HHHHhhccC
Confidence 444444333
No 218
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=20.77 E-value=7.9e+02 Score=23.93 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHHhhHHHHHHH
Q 003812 150 LNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI--ELVSNQRQLEAE 227 (793)
Q Consensus 150 L~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l--El~s~QrqlEae 227 (793)
+..-|.+-+..+. ..+++.+..+.++++.++..+..-.+.+ .++++...+-+++-+... -+..++.+.+..
T Consensus 33 i~~~l~~R~~~I~---~~l~~Ae~~~~ea~~~~~e~e~~l~~A~----~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~ 105 (164)
T PRK14473 33 VLNLLNERTRRIE---ESLRDAEKVREQLANAKRDYEAELAKAR----QEAAKIVAQAQERARAQEAEIIAQARREAEKI 105 (164)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555554 5566666666666666666666554443 333333333333322222 355666677777
Q ss_pred HHHHHHHHHHhHHH
Q 003812 228 LGRAHRQVEARKEE 241 (793)
Q Consensus 228 L~rA~~~l~a~~~E 241 (793)
+..|..+++.-+..
T Consensus 106 ~~~a~~~I~~ek~~ 119 (164)
T PRK14473 106 KEEARAQAEQERQR 119 (164)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766655443
No 219
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=20.60 E-value=7.8e+02 Score=23.83 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHHhhHHHHHHHHHHHHHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI--ELVSNQRQLEAELGRAHRQVEA 237 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l--El~s~QrqlEaeL~rA~~~l~a 237 (793)
..+++.+..+.+.+..+...+..-.+. +.++++...+-++.-+... -+..++.+.+..+..|..+++.
T Consensus 43 ~~l~~A~~~~~eA~~~~~e~~~~l~~a----~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~ 112 (159)
T PRK13461 43 NKIEKADEDQKKARELKLKNERELKNA----KEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQR 112 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444444222 2333332222222222221 2444455555555555554443
No 220
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.55 E-value=1.4e+02 Score=29.42 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHhhh
Q 003812 443 KRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQLK 489 (793)
Q Consensus 443 ~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~~~ 489 (793)
+.+-++++++.+-|.-..---.+|++-+-.|+.|+..|+++|.....
T Consensus 76 ~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 76 ARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777778999999999999999999887654
No 221
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.50 E-value=1.2e+03 Score=25.75 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=45.9
Q ss_pred HHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHH
Q 003812 90 IEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLV 161 (793)
Q Consensus 90 i~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~ 161 (793)
+.+|+++=+.=++-|..++.-.-+-|.+=-.-=+.|+++-+.+..-+..++-.+...+..++..|.+.+.-.
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~ 79 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKE 79 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 456666666667778877776666666666666667777777766666666655555555555555544444
No 222
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.47 E-value=1.1e+03 Score=25.65 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Q 003812 258 KLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKA 303 (793)
Q Consensus 258 kLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kA 303 (793)
....++..++.+++.++.-|..+ .++|..+..+++.++.
T Consensus 227 ~~k~~l~el~~el~~l~~~i~~~-------~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 227 AKKKELAELQEELEELEEKIEEL-------EEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 44444555555555555444433 5566667666665553
No 223
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=20.11 E-value=1.5e+03 Score=26.89 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=33.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 003812 261 LEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAK 304 (793)
Q Consensus 261 ~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAk 304 (793)
+||.+|.|++..=.--|-+|++--+....--+|+.-|+.++|++
T Consensus 519 sEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKak 562 (593)
T KOG4807|consen 519 SEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAK 562 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHh
Confidence 35555556655544457789999999999999999999999887
No 224
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.08 E-value=1.2e+03 Score=25.71 Aligned_cols=6 Identities=0% Similarity=0.346 Sum_probs=2.3
Q ss_pred hHHHHH
Q 003812 390 RLEGWV 395 (793)
Q Consensus 390 ~le~W~ 395 (793)
.+.+++
T Consensus 241 am~~~L 246 (314)
T PF04111_consen 241 AMVAFL 246 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 225
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.04 E-value=8.2e+02 Score=23.85 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRE 194 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE 194 (793)
..+.+.++...+.+..+...+..-.+.+.
T Consensus 60 ~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ 88 (156)
T CHL00118 60 KNLTKASEILAKANELTKQYEQELSKARK 88 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555444433
No 226
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.04 E-value=1.4e+03 Score=26.71 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 003812 121 ERKQLRQQIGALINELRILDKKK 143 (793)
Q Consensus 121 ErKrLr~qI~al~~E~~~le~~k 143 (793)
..+++++.|..+...+..++.++
T Consensus 88 ~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 88 DLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 44566666666666666666554
Done!