Query 003812
Match_columns 793
No_of_seqs 35 out of 37
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 04:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 95.7 0.76 2.6E-05 60.5 23.5 51 257-321 2038-2095(3245)
2 1i84_S Smooth muscle myosin he 95.6 0.29 1E-05 58.3 17.9 54 433-486 1109-1162(1184)
3 1i84_S Smooth muscle myosin he 94.6 0.34 1.2E-05 57.7 14.8 18 258-275 952-969 (1184)
4 1c1g_A Tropomyosin; contractIl 92.9 5.5 0.00019 36.5 35.7 56 428-483 225-280 (284)
5 3na7_A HP0958; flagellar bioge 91.8 11 0.00039 37.5 21.0 56 226-281 97-152 (256)
6 2v71_A Nuclear distribution pr 90.8 12 0.00039 37.3 16.9 48 223-274 134-181 (189)
7 3vkg_A Dynein heavy chain, cyt 85.2 26 0.0009 46.8 19.5 73 226-298 2049-2132(3245)
8 2dfs_A Myosin-5A; myosin-V, in 80.9 37 0.0013 40.8 17.2 18 143-160 958-975 (1080)
9 3ghg_A Fibrinogen alpha chain; 69.2 42 0.0014 38.1 12.7 128 149-301 50-188 (562)
10 2ocy_A RAB guanine nucleotide 69.0 87 0.003 30.3 16.1 75 166-243 65-139 (154)
11 2fxo_A Myosin heavy chain, car 68.3 72 0.0025 29.1 16.8 94 169-273 30-123 (129)
12 3oja_B Anopheles plasmodium-re 63.5 1.3E+02 0.0045 32.2 14.9 8 147-154 479-486 (597)
13 3o0z_A RHO-associated protein 62.7 1.2E+02 0.0041 29.8 16.1 115 146-268 7-132 (168)
14 2zuo_A MVP, major vault protei 59.6 2.9E+02 0.0099 33.1 18.1 92 146-241 705-796 (861)
15 2dfs_A Myosin-5A; myosin-V, in 59.2 3E+02 0.01 33.2 25.4 50 222-274 994-1043(1080)
16 3tnu_A Keratin, type I cytoske 56.5 1.2E+02 0.0041 27.7 12.7 42 223-271 88-129 (131)
17 3nmd_A CGMP dependent protein 55.0 8.5 0.00029 33.4 3.2 37 418-454 32-68 (72)
18 2i1j_A Moesin; FERM, coiled-co 53.6 16 0.00054 40.9 5.9 125 166-312 328-456 (575)
19 3tnu_B Keratin, type II cytosk 49.7 1.5E+02 0.0052 26.9 13.2 42 223-271 86-127 (129)
20 2e7s_A RAB guanine nucleotide 48.8 85 0.0029 29.9 9.2 72 166-240 53-124 (135)
21 2eqb_B RAB guanine nucleotide 46.7 1.7E+02 0.0058 26.6 12.6 48 166-213 33-80 (97)
22 3hnw_A Uncharacterized protein 43.0 38 0.0013 31.8 5.9 60 412-471 75-134 (138)
23 3ajw_A Flagellar FLIJ protein; 42.4 1.8E+02 0.0062 25.7 12.8 84 78-161 30-115 (150)
24 2i1j_A Moesin; FERM, coiled-co 41.7 33 0.0011 38.4 6.1 24 441-464 512-535 (575)
25 2wt7_A Proto-oncogene protein 41.0 40 0.0014 27.5 5.0 46 426-471 10-61 (63)
26 2jee_A YIIU; FTSZ, septum, coi 40.9 1.5E+02 0.005 26.2 8.8 62 222-283 9-77 (81)
27 1nlw_A MAD protein, MAX dimeri 37.2 88 0.003 26.8 6.8 60 25-95 16-75 (80)
28 2b9c_A Striated-muscle alpha t 36.8 2.8E+02 0.0095 26.3 12.5 102 126-243 2-104 (147)
29 1ci6_A Transcription factor AT 35.5 55 0.0019 26.9 5.0 37 435-471 25-61 (63)
30 1l2p_A ATP synthase B chain; a 34.6 1.7E+02 0.0057 23.1 9.0 55 181-235 3-59 (61)
31 3o0z_A RHO-associated protein 34.1 3.5E+02 0.012 26.6 15.8 63 166-228 76-156 (168)
32 1t2k_D Cyclic-AMP-dependent tr 34.0 56 0.0019 26.4 4.8 37 435-471 24-60 (61)
33 1d7m_A Cortexillin I; coiled-c 33.2 2.2E+02 0.0075 25.9 8.8 61 122-189 20-83 (101)
34 1nkp_A C-MYC, MYC proto-oncoge 32.0 75 0.0026 27.6 5.6 66 25-94 21-86 (88)
35 2xnx_M M protein, M1-BC1; cell 31.7 3.3E+02 0.011 26.4 10.4 74 224-311 64-137 (146)
36 3okq_A BUD site selection prot 29.2 3.9E+02 0.013 25.7 11.2 80 231-322 8-91 (141)
37 3nmd_A CGMP dependent protein 29.2 1.4E+02 0.0049 25.9 6.7 59 210-268 10-68 (72)
38 2v4h_A NF-kappa-B essential mo 28.7 2.8E+02 0.0097 25.7 9.0 75 71-145 21-108 (110)
39 1f5n_A Interferon-induced guan 28.6 6.8E+02 0.023 28.3 14.8 20 251-270 564-583 (592)
40 3ol1_A Vimentin; structural ge 28.1 2.1E+02 0.0071 26.0 8.0 40 232-271 40-79 (119)
41 3lay_A Zinc resistance-associa 27.9 2.9E+02 0.0098 26.9 9.5 62 246-307 70-131 (175)
42 2q12_A DIP13 alpha, DCC-intera 27.3 90 0.0031 30.6 5.9 56 685-740 10-70 (265)
43 3nr7_A DNA-binding protein H-N 27.1 2.4E+02 0.0082 24.8 7.9 54 136-192 14-68 (86)
44 2l5g_B Putative uncharacterize 24.9 1.1E+02 0.0039 24.2 4.9 34 124-161 6-39 (42)
45 2b5u_A Colicin E3; high resolu 23.8 8.6E+02 0.029 27.8 16.0 15 268-282 416-430 (551)
46 2v71_A Nuclear distribution pr 22.3 5.8E+02 0.02 25.3 14.5 67 198-267 34-101 (189)
47 1jnm_A Proto-oncogene C-JUN; B 21.6 60 0.002 26.3 2.9 37 435-471 24-60 (62)
48 1pq1_B BCL2-like protein 11; B 21.3 30 0.001 26.1 0.9 11 768-778 4-17 (33)
49 3oja_A Leucine-rich immune mol 21.2 7.2E+02 0.025 26.0 11.8 103 206-308 354-475 (487)
50 3iv1_A Tumor susceptibility ge 21.1 4.2E+02 0.014 23.2 9.8 56 188-243 8-63 (78)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.72 E-value=0.76 Score=60.48 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHhhhh
Q 003812 257 QKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAE-------LETERWKAASQS 321 (793)
Q Consensus 257 qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE-------~E~erWkrlaE~ 321 (793)
++|-..|+.|+.+.+.. +.||+.|-.++..++.+=..|+ -|..||..-.+.
T Consensus 2038 ~~le~~l~~L~~~~~~~--------------~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATL--------------IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 46777777777766543 4588888888888887777665 388999876665
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.58 E-value=0.29 Score=58.27 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHH
Q 003812 433 WRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFIS 486 (793)
Q Consensus 433 wrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~ 486 (793)
-.+-.++.++++++.+++.|..++...+.....++.-...-..++..|+.++..
T Consensus 1109 ~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555544433333333333334455555554443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.64 E-value=0.34 Score=57.68 Aligned_cols=18 Identities=11% Similarity=0.525 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhHH
Q 003812 258 KLSLEIVKMRKDLDQKDK 275 (793)
Q Consensus 258 kLs~El~klRkd~e~KDk 275 (793)
++..++..+++++++-..
T Consensus 952 ~le~el~~L~~eleele~ 969 (1184)
T 1i84_S 952 KMQQQMLDLEEQLEEEEA 969 (1184)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555544333
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.95 E-value=5.5 Score=36.52 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHH
Q 003812 428 LEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQ 483 (793)
Q Consensus 428 LEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~q 483 (793)
+...+-.+-.++.++..+...+..++..+..++..-..++.-+..-..++..+.++
T Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
T 1c1g_A 225 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333333333333333333333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.77 E-value=11 Score=37.49 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 003812 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAML 281 (793)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaML 281 (793)
.++.-+.+.....+.++..++++.+........+...+..++.+++.+-.-+.+-+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 152 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEV 152 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555556666655555555666667777766666655554433
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.77 E-value=12 Score=37.33 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhH
Q 003812 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKD 274 (793)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KD 274 (793)
.+|..|+.|.....=...||+. |+.....+|+|-+|+--|+.|+.-++
T Consensus 134 D~e~kln~aiEr~alLE~El~E----Ke~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 134 DFEQRLNQAIERNAFLESELDE----KESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777788777777777763 77777788889999988888875443
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.22 E-value=26 Score=46.77 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhh---------hHHHHHH-HHh-hccCChHHHHHH
Q 003812 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQ---------KDKILSA-MLR-KSKSDTAEKQML 294 (793)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~---------KDkilSa-MLr-kSklD~~EKemL 294 (793)
+++..+.++-..-+.+++.+...-+-+..++..|+.|=.+=...+++ -|.+||+ .+- -.-++..-|+.|
T Consensus 2049 ~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2049 EEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 33334444444444444444444444444444555554443333322 3445543 222 235677888888
Q ss_pred HHHH
Q 003812 295 LKEV 298 (793)
Q Consensus 295 lrEv 298 (793)
+..-
T Consensus 2129 ~~~W 2132 (3245)
T 3vkg_A 2129 MRKW 2132 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7553
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.88 E-value=37 Score=40.82 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=9.5
Q ss_pred chhhHHHHHHHHHHHHHH
Q 003812 143 KDESISELNEKLKDMELL 160 (793)
Q Consensus 143 k~~~i~EL~~kLkE~E~l 160 (793)
...++++|++.+.+++.+
T Consensus 958 ~~~e~~~L~~~l~~le~~ 975 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMS 975 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555553
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=69.23 E-value=42 Score=38.13 Aligned_cols=128 Identities=6% Similarity=0.096 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH-HHHhhHHHHHHH
Q 003812 149 ELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI-ELVSNQRQLEAE 227 (793)
Q Consensus 149 EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l-El~s~QrqlEae 227 (793)
+|+--|-++|.=+. +.|++-++.-.++...-+-++....++.+.++..+..+. +.....-.+. ||+....-|+.+
T Consensus 50 rLQglLdkqErDlt---krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFT---NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 445555555555554555555555555555544443322 4444444443 555555444444
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc----------cCChHHHHHHHHH
Q 003812 228 LGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS----------KSDTAEKQMLLKE 297 (793)
Q Consensus 228 L~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS----------klD~~EKemLlrE 297 (793)
+..-+.++.+-+.-|+ ++..+|.+| ++-|.+.||-- ++|.+.-+.+-|-
T Consensus 126 VdnQlsnIrvLQsnLe--------------dq~~kIQRL-------EvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQ 184 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVR--------------AQLVDMKRL-------EVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQ 184 (562)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHH-------HHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHH-------HHHHHHHHHhccccccchheeecchHHHHHHHHH
Confidence 4444444444343333 444444444 44566666642 4566655555544
Q ss_pred HHHH
Q 003812 298 VKIS 301 (793)
Q Consensus 298 vk~~ 301 (793)
|.++
T Consensus 185 LeQv 188 (562)
T 3ghg_A 185 LEQV 188 (562)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 10
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.98 E-value=87 Score=30.34 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
.++.+++.++.+.+.....++.-.++|=-.+=.||.+-.++=++.+.++ | ..-.+|+++|+-+-.-++.-...|.
T Consensus 65 ~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~-e--~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 65 EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAI-E--ILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999999999999996666778777766665554443 2 2234566777766666666555554
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=68.26 E-value=72 Score=29.14 Aligned_cols=94 Identities=26% Similarity=0.340 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 003812 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQ 248 (793)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~ 248 (793)
+.....+++|+.+...+..--..|...+..|-.. .+ -..+.+--|...+.+||..|.-+...++.-......+..
T Consensus 30 ~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~-l~---e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~- 104 (129)
T 2fxo_A 30 EKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN-LA---DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA- 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3556667777777777776666666655443222 21 222333356667777887777666665554444443333
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhh
Q 003812 249 KEESVSFAQKLSLEIVKMRKDLDQK 273 (793)
Q Consensus 249 kee~~~~~qkLs~El~klRkd~e~K 273 (793)
--.+|-.++.-|++++++-
T Consensus 105 ------~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 105 ------KKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 3346777788888877764
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.48 E-value=1.3e+02 Score=32.20 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003812 147 ISELNEKL 154 (793)
Q Consensus 147 i~EL~~kL 154 (793)
+..++.++
T Consensus 479 l~~~~~~i 486 (597)
T 3oja_B 479 LQGLHAEI 486 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=62.74 E-value=1.2e+02 Score=29.79 Aligned_cols=115 Identities=22% Similarity=0.234 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH-HHHhhHHHH
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI-ELVSNQRQL 224 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l-El~s~Qrql 224 (793)
.|..|+++|.|+...+. ...|...+=+|..++ +-+.+..+ |.+.+|+|+...-|.+++.++= |+..-|-+|
T Consensus 7 Ki~~LekQL~E~n~kLk---~EsE~~~rlkK~~tE----l~k~~~~~-E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLR---TESDTAVRLRKSHTE----MSKSISQL-ESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp ---CTHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777765 333433333332222 11222222 4555666766666777776664 666666666
Q ss_pred HHHH----------HHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003812 225 EAEL----------GRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRK 268 (793)
Q Consensus 225 EaeL----------~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRk 268 (793)
+.|- +-.-..+.+...||+.+...-...-.=-..|..-|..|.|
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 1111134444455554444333333333444444444444
No 14
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=59.64 E-value=2.9e+02 Score=33.12 Aligned_cols=92 Identities=22% Similarity=0.175 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH
Q 003812 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE 225 (793)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlE 225 (793)
.+-+|+.+.--.|.-..++-.+.-..+..+.+-+..+..|+.-+.-+ +.+......-+.+-+++.|.-...|.+||
T Consensus 705 ~Llel~a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~----~i~~~ael~~~~~~~~~el~~~~~~~ele 780 (861)
T 2zuo_A 705 ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQAL----AIETEAELERVKKVREMELIYARAQLELE 780 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555443443334444444444444433333211 22222222233455666666666666666
Q ss_pred HHHHHHHHHHHHhHHH
Q 003812 226 AELGRAHRQVEARKEE 241 (793)
Q Consensus 226 aeL~rA~~~l~a~~~E 241 (793)
-.-++++.++++.+.+
T Consensus 781 ~~k~~~la~ie~~kf~ 796 (861)
T 2zuo_A 781 VSKAQQLANVEAKKFK 796 (861)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665544
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.16 E-value=3e+02 Score=33.21 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhH
Q 003812 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKD 274 (793)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KD 274 (793)
.+++.++.++.++....+..++.+. ++-...+..|..|..+||+.+++-.
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444443333 2333566677888888887665543
No 16
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.47 E-value=1.2e+02 Score=27.70 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 003812 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLD 271 (793)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e 271 (793)
.||++|..+..++..-..|...++-.|- .|-.||++-||=+|
T Consensus 88 ~lE~eL~~~r~em~~ql~EYq~Ll~vKl-------~Ld~EIatYRkLLE 129 (131)
T 3tnu_A 88 SVEEQLAQLRCEMEQQNQEYKILLDVKT-------RLEQEIATYRRLLE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHC
Confidence 4566666666666655555554444332 46667777776543
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.03 E-value=8.5 Score=33.36 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhh
Q 003812 418 AEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNH 454 (793)
Q Consensus 418 ~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~ 454 (793)
.+++|.||+++...=-+|-..|.+++.||++++.+.+
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3558888888888888888888888888888887754
No 18
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.55 E-value=16 Score=40.93 Aligned_cols=125 Identities=22% Similarity=0.272 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEI----RKHKTAFIELVSNQRQLEAELGRAHRQVEARKEE 241 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl----~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~E 241 (793)
.+-++.++++.+++.+|...+......++.+. +.++-+..| +.-.++-..|.+.+.++|.++.+-...-...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~--- 403 (575)
T 2i1j_A 328 AARERAEKKQQEYQDRLRQMQEEMERSQANLL-EAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNME--- 403 (575)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---
Confidence 34455677788888888888766643333221 111111111 1111111234444444444433322221111
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHH
Q 003812 242 LDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELET 312 (793)
Q Consensus 242 L~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~ 312 (793)
..|=..|-+++..++..++.|-.-+.---+|...|=.++..++...+.|..+-
T Consensus 404 ------------------~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 404 ------------------AAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223344455555666666666666666677777777766666555444443
No 19
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.71 E-value=1.5e+02 Score=26.89 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 003812 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLD 271 (793)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e 271 (793)
.||++|..+..++..-..|...++-.|- .|-.||+.-||=+|
T Consensus 86 ~lE~eL~~~r~e~~~ql~EYq~LlnvKl-------~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 86 ELEEALQKAKQDMARLLREYQELMNTKL-------ALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHC
Confidence 3556666666665555555554444332 45567777776443
No 20
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.79 E-value=85 Score=29.92 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKE 240 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~ 240 (793)
.++.+++.++.+++.....++.-.++|--.+=.||.+-.++=++.+..+ | ..-.+|+++|+-+-.-+++-..
T Consensus 53 ~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~-e--~r~~~L~~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 53 EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAI-E--ILNKRLTEQLREKDMLLDTLTL 124 (135)
T ss_dssp HHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH-H--HHHHHHHHTTTHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888999999999999999996666677777666655554443 2 2223455555555444444433
No 21
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.73 E-value=1.7e+02 Score=26.60 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH
Q 003812 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTA 213 (793)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a 213 (793)
..+.+++.+|..++.....++.-.++|--.+=.||.+-.++=++.+..
T Consensus 33 ~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~ 80 (97)
T 2eqb_B 33 EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYA 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999666667777766655554443
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.95 E-value=38 Score=31.77 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=49.0
Q ss_pred hhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 003812 412 LELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (793)
Q Consensus 412 ~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (793)
.+++.+..++.-+++.+....-.|++...++..+..+++.|..++..+...+.+||+=+.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788877888888888888888888888888888888888888888888876554
No 23
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=42.36 E-value=1.8e+02 Score=25.74 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=55.8
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhh--hHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHH
Q 003812 78 KLSQKLDAAEREIEELKKLRHEDAKANE--KVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLK 155 (793)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANe--KVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLk 155 (793)
...+.+..++.++.+|...|.+=..... -..||-++.=+.|..=-..|...|......+..++..-+..-..|.++-.
T Consensus 30 ~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~ 109 (150)
T 3ajw_A 30 EMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQ 109 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888899999887765322211 12466666667777778888888888888888877765555555555554
Q ss_pred HHHHHH
Q 003812 156 DMELLV 161 (793)
Q Consensus 156 E~E~l~ 161 (793)
+...+-
T Consensus 110 ~~k~~e 115 (150)
T 3ajw_A 110 RLQAWQ 115 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 24
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.66 E-value=33 Score=38.40 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=16.5
Q ss_pred HHHHHhhhhhhhhhhhHHhhhhch
Q 003812 441 ESKRLQSHVEGLNHETSQLRHDNM 464 (793)
Q Consensus 441 E~~rLrS~~e~L~~~lsq~~~~~~ 464 (793)
-.++||.++..|.++|+.++++..
T Consensus 512 kn~~lq~qL~~L~~el~~~r~~~k 535 (575)
T 2i1j_A 512 RNERLHNQLKALKQDLARSCDETK 535 (575)
T ss_dssp HCHHHHHHHHHHHHHHHTTBCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Confidence 356677777777777777776654
No 25
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.01 E-value=40 Score=27.55 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=28.7
Q ss_pred hhHHHHHHH------hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 003812 426 EKLEGYRWR------LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (793)
Q Consensus 426 EKLEaFRwr------llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (793)
-|+.|-|.+ +..|+.++..|.+.-..|..++..++.+...|..+|.
T Consensus 10 NR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 10 NKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566655 5566666666666666666666666666666665553
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.89 E-value=1.5e+02 Score=26.22 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHH-------HHHHHHHHhhhhhhhHHHHHHHHhh
Q 003812 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQK-------LSLEIVKMRKDLDQKDKILSAMLRK 283 (793)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qk-------Ls~El~klRkd~e~KDkilSaMLrk 283 (793)
.+||+-...|+.-+.--.-|++.+-+.+..-+.=++. |-.|...|+.+....+.=|.+||.|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777776666666666555554443333333 7779999999999999999999977
No 27
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=37.22 E-value=88 Score=26.80 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=34.6
Q ss_pred HHHHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHHhhccccchhhhHHhHHHHHHHHHHHHHH
Q 003812 25 VSCAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQRDGANGEKCKLSQKLDAAEREIEELKK 95 (793)
Q Consensus 25 Vs~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq~e~~~g~~~~L~~kL~~AE~ei~eLKk 95 (793)
+=-.|++|+.+.+...+..+.+.+ .+|+.|++|..-|-...+ .|.........++.+|++
T Consensus 16 lk~~f~~Lr~~vP~~~~~~k~sk~--~iL~kA~~yI~~L~~~~~---------~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 16 LRLSLEKLKGLVPLGPDSSRHTTL--SLLTKAKLHIKKLEDSDR---------KAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHSSCCCSSSCCCTTH--HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 345788999984322233454443 677889998877655432 233344445555555543
No 28
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=36.79 E-value=2.8e+02 Score=26.26 Aligned_cols=102 Identities=23% Similarity=0.262 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003812 126 RQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSN 205 (793)
Q Consensus 126 r~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~ 205 (793)
.++|..+.+++.. -+.++.....+|.+.+.- ..+..+.++.|+.+-..-+.-...|-..+ .++...+.
T Consensus 2 ~Rri~llEeeLer----~eerl~~a~~kLeeaek~-------adE~eR~~k~lE~r~~~deEr~~~lE~qL-keak~~ae 69 (147)
T 2b9c_A 2 NRRIQLVEEELDR----AQERLATALQKLEEAEKA-------ADESERGMKVIESRAQKDEEKMEIQEIQL-KEAKHIAE 69 (147)
T ss_dssp ---------CCGG----GGTTTTHHHHHHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred chHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcccHHHHHHHHHHH-HHHHHHHH
Confidence 4555566655554 334455555555554433 33445555555555555444444441111 12222111
Q ss_pred HH-HhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 206 EI-RKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 206 dl-~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
+- +|. -|+...=..+|.+|.||-..++++...+.
T Consensus 70 eadrKy----eE~~RKl~~~E~dLeraeeRae~aE~k~~ 104 (147)
T 2b9c_A 70 DADRKY----EEVARKLVIIESDLERAEERAELSEGKCA 104 (147)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 121 23444444566777777777777766665
No 29
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.51 E-value=55 Score=26.91 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 003812 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (793)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (793)
.-.|+.++..|..+-..|..+++.++.++..|-.||.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677777777777777777777777666666654
No 30
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=34.61 E-value=1.7e+02 Score=23.05 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003812 181 KISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQV 235 (793)
Q Consensus 181 kLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (793)
.|..+..-+.++.+.++.+++....++. -+.++---+..++.++|.+-.+|..+|
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~L 59 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555666666666666655555543 233333456677777777777777665
No 31
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=34.13 E-value=3.5e+02 Score=26.60 Aligned_cols=63 Identities=29% Similarity=0.458 Sum_probs=43.1
Q ss_pred hhhHHHHHHH-------HHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHhhHHHH-----HHHHhhHHHHHHH
Q 003812 166 RVLEEDEQKR-------KELEEKISIAEKIAEELRE------NAKQEAQEHSNEIRKHKTAF-----IELVSNQRQLEAE 227 (793)
Q Consensus 166 ka~Eee~~k~-------keleekLa~aEk~~~eLrE------~akrEaqehS~dl~Khk~a~-----lEl~s~QrqlEae 227 (793)
.+++++++-+ .++++|+..+..-...++. .-++.+++-.++|.|.+.-. .+|...|.-+|-|
T Consensus 76 a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 76 AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4455555444 5677788888877777776 33678888888888877654 2577777666655
Q ss_pred H
Q 003812 228 L 228 (793)
Q Consensus 228 L 228 (793)
.
T Consensus 156 ~ 156 (168)
T 3o0z_A 156 V 156 (168)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.03 E-value=56 Score=26.37 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 003812 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (793)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (793)
.-.+|.++..|.++-..|..++..++.+...|..+|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666666666666666655553
No 33
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=33.18 E-value=2.2e+02 Score=25.93 Aligned_cols=61 Identities=31% Similarity=0.435 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003812 122 RKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIA 189 (793)
Q Consensus 122 rKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~ 189 (793)
+-.|-.|-+.|.+-++.++. ..+++|.+|+.++.+- + +-++.++--+-+|+.||++.|+.-
T Consensus 20 ~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~---L----k~l~~EklAkldLE~RLsKtEKDk 83 (101)
T 1d7m_A 20 REQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET---L----KNLELEKLARMELEARLAKTEKDR 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HcccHHHHHHHHHHHHHhhhhhHH
Confidence 34566666777777777664 4667788888777652 1 456667777789999999998865
No 34
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=31.97 E-value=75 Score=27.58 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHHhhccccchhhhHHhHHHHHHHHHHHHH
Q 003812 25 VSCAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQRDGANGEKCKLSQKLDAAEREIEELK 94 (793)
Q Consensus 25 Vs~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq~e~~~g~~~~L~~kL~~AE~ei~eLK 94 (793)
+--+|.+|+.+.+...+..|++.+ .+|+.|++|+.-|....+.... ....|.++-.....+|.+|+
T Consensus 21 ln~~f~~Lr~~vP~~~~~~K~sK~--~iL~~A~~YI~~L~~~~~~l~~--~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 21 LKRSFFALRDQIPELENNEKAPKV--VILKKATAYILSVQAEEQKLIS--EEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHTTCGGGTTCTTCCHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 456788999884322223455553 5788899999887765443211 12234445555555555553
No 35
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=31.68 E-value=3.3e+02 Score=26.35 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Q 003812 224 LEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKA 303 (793)
Q Consensus 224 lEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kA 303 (793)
||+.+....+++++++..+..+ ..+++.++.++.+-..-+..+=....|..+-|+-|-|.+..+.+
T Consensus 64 le~~~~~l~rdleasr~akk~~--------------ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASRe 129 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNA--------------KLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASRE 129 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHGGGTTTC----------------
T ss_pred hHhhHHHHHHHHHHHHHHHHhH--------------HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455555666777777666633 33334433333333333444445567888889999999999999
Q ss_pred HHHHhHHH
Q 003812 304 KRRQAELE 311 (793)
Q Consensus 304 krK~AE~E 311 (793)
.+|+.|..
T Consensus 130 AKKqlEad 137 (146)
T 2xnx_M 130 AKKQVEKD 137 (146)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99987654
No 36
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=29.23 E-value=3.9e+02 Score=25.69 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=56.8
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHh--
Q 003812 231 AHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQA-- 308 (793)
Q Consensus 231 A~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~A-- 308 (793)
.+.++++.+..|..-+..-. .=+-+|-+=+.-||+|. ..|..+-.+...+-+.+++..+.+.=+..
T Consensus 8 ~R~y~~~~k~kL~~~sd~Lv---tkVDDLQD~VE~LRkDV---------~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~ 75 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLL---SKVDDLQDVIEIMRKDV---------AERRSQPAKKKLETVSKDLENAQADVLKLQE 75 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---------HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH---------HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888875443332 33345555566777764 56888999999999999998887765443
Q ss_pred --HHHHHHHHHhhhhh
Q 003812 309 --ELETERWKAASQSR 322 (793)
Q Consensus 309 --E~E~erWkrlaE~r 322 (793)
..|.+-||++||.-
T Consensus 76 ~i~~ekP~WKKiWE~E 91 (141)
T 3okq_A 76 FIDTEKPHWKKTWEAE 91 (141)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHcCchhHHHHHHH
Confidence 35889999999974
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.20 E-value=1.4e+02 Score=25.86 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003812 210 HKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRK 268 (793)
Q Consensus 210 hk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRk 268 (793)
|--|.||-+-.=++|+..|.+..+++-....-++.+-..-.+....++.|-.+|.++|.
T Consensus 10 ~~~~~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 10 HGMASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567788888888999998888888888777777777777888888888888888763
No 38
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.73 E-value=2.8e+02 Score=25.74 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=0.0
Q ss_pred cccchhhhHHhHHHHHHHHH----HHHHHhhhhhhhhhh---hH------HHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003812 71 GANGEKCKLSQKLDAAEREI----EELKKLRHEDAKANE---KV------VGIFAAQEQSWFSERKQLRQQIGALINELR 137 (793)
Q Consensus 71 ~~~g~~~~L~~kL~~AE~ei----~eLKkrR~EDAKANe---KV------v~IfAsheqsW~~ErKrLr~qI~al~~E~~ 137 (793)
++.-....|..+|..||+.+ .+....+.++++-++ .| |.||-+.-.+=.+-|-++..++..|..+++
T Consensus 21 ~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 21 MASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Q ss_pred Hhhhhchh
Q 003812 138 ILDKKKDE 145 (793)
Q Consensus 138 ~le~~k~~ 145 (793)
.|..+..+
T Consensus 101 ~Lq~q~~~ 108 (110)
T 2v4h_A 101 QLQREFNK 108 (110)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
No 39
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.59 E-value=6.8e+02 Score=28.25 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 003812 251 ESVSFAQKLSLEIVKMRKDL 270 (793)
Q Consensus 251 e~~~~~qkLs~El~klRkd~ 270 (793)
..-.-+..|..||..|++..
T Consensus 564 g~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 564 GFQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp TCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444556667777777653
No 40
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.06 E-value=2.1e+02 Score=25.96 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=18.9
Q ss_pred HHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 003812 232 HRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLD 271 (793)
Q Consensus 232 ~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e 271 (793)
..+++.++..++.....-++-..+-+.+-.+++.+||+++
T Consensus 40 ~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 40 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 3333444444444443334444444555555666666554
No 41
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.93 E-value=2.9e+02 Score=26.91 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=47.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Q 003812 246 LEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQ 307 (793)
Q Consensus 246 ~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~ 307 (793)
-+|+..-..+-++-..+...+|+++..|..-|.+++...+.|.+.=..|++|+...+++...
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666677777888888888889999999999999999999988877765443
No 42
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=27.31 E-value=90 Score=30.60 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=44.3
Q ss_pred CCCCCCchhhhcc-----cchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccc
Q 003812 685 EISPEDSSTAKRR-----GDTKTLEHFLEETFQLQRYIVSTGQKLMEVQSKIASGFVEFTE 740 (793)
Q Consensus 685 ~~~~~~s~~~r~~-----~~t~~l~~FLeEtFqLQry~v~TgQKlme~Qs~i~~~~~~~~~ 740 (793)
.+...||+.||.. .++..++.+|..-...=..|+.+|..+-.-+..++.++..++.
T Consensus 10 ~e~~~DSP~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~ 70 (265)
T 2q12_A 10 EETLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEK 70 (265)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999965 5666788888888889999999999999999999988887543
No 43
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=27.09 E-value=2.4e+02 Score=24.79 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=36.7
Q ss_pred HHHhhh-hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003812 136 LRILDK-KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (793)
Q Consensus 136 ~~~le~-~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (793)
+|++++ .++-.+..|++-+.-...++. ..-+++.....+..+|.++.+++.+.|
T Consensus 14 iR~LRA~arel~le~Lee~leKl~~Vve---ERree~~~~~~~~~er~~Kl~~~~e~l 68 (86)
T 3nr7_A 14 IRTLRAQARESTLETLEEMLEKLEVVVN---ERREEESAAAAEVEERTRKLQQYREML 68 (86)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665 466788899988888888887 344444555566666777776666555
No 44
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.94 E-value=1.1e+02 Score=24.22 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHH
Q 003812 124 QLRQQIGALINELRILDKKKDESISELNEKLKDMELLV 161 (793)
Q Consensus 124 rLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~ 161 (793)
.|.|+|+-+-.||.. -+..|.+|+.+++++|..+
T Consensus 6 ~l~qkI~kVdrEI~K----te~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITM----VEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Confidence 478899999888876 5567999999999988765
No 45
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=23.75 E-value=8.6e+02 Score=27.80 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=7.8
Q ss_pred hhhhhhHHHHHHHHh
Q 003812 268 KDLDQKDKILSAMLR 282 (793)
Q Consensus 268 kd~e~KDkilSaMLr 282 (793)
++..+-|.-||..|+
T Consensus 416 ~~~s~~~~~ls~~me 430 (551)
T 2b5u_A 416 KEKSDADAALSSAME 430 (551)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhh
Confidence 333444455666666
No 46
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.35 E-value=5.8e+02 Score=25.33 Aligned_cols=67 Identities=30% Similarity=0.302 Sum_probs=40.3
Q ss_pred HHHHHhhHHHHhhHHHHH-HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 003812 198 QEAQEHSNEIRKHKTAFI-ELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMR 267 (793)
Q Consensus 198 rEaqehS~dl~Khk~a~l-El~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klR 267 (793)
.|-|+.|.+|-..-++-| .+.+..++|...+++...+++..+..++. ..-+++..+..|-.||..+|
T Consensus 34 ~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~---~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 34 VEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH---QYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 456677767766666666 55556666777777777777776666652 22344444555555555555
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.56 E-value=60 Score=26.32 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 003812 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (793)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (793)
+-.||.++..|.++-..|..+++.++.+...|..+|+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666665555543
No 48
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=21.29 E-value=30 Score=26.12 Aligned_cols=11 Identities=73% Similarity=1.002 Sum_probs=8.8
Q ss_pred hhHHHH---HHhhc
Q 003812 768 LEVRIA---RIIGD 778 (793)
Q Consensus 768 LEvria---RIIGD 778 (793)
-||||| |-|||
T Consensus 4 PEiwIAQELRRIGD 17 (33)
T 1pq1_B 4 PEIRIAQELRRIGD 17 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhH
Confidence 389998 67887
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.16 E-value=7.2e+02 Score=26.05 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh-------------------hHHHHHHHHHHHHHH
Q 003812 206 EIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEE-------------------SVSFAQKLSLEIVKM 266 (793)
Q Consensus 206 dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee-------------------~~~~~qkLs~El~kl 266 (793)
.+.+-+...+-+...+.++|..+.+..+.++....++.....+.+. ...|.+++-.|..++
T Consensus 354 ~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (487)
T 3oja_A 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred hhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHh
Q 003812 267 RKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQA 308 (793)
Q Consensus 267 Rkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~A 308 (793)
+++.+..-.-+..|.+.-.--..+-+.+-..++-+.++=+-|
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
No 50
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.13 E-value=4.2e+02 Score=23.22 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003812 188 IAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (793)
Q Consensus 188 ~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (793)
+.+-||-+++.....+.++|.--+.+--||...+..|+..+.+--++-+....+++
T Consensus 8 VeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~ 63 (78)
T 3iv1_A 8 VSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777787777777778888887777666655554444444443
Done!