Query 003812
Match_columns 793
No_of_seqs 35 out of 37
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 04:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003812.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003812hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l2pa_ f.23.21.1 (A:) F1F0 AT 58.6 24 0.0018 27.4 8.4 54 182-235 4-59 (61)
2 d1rz3a_ c.37.1.6 (A:) Hypothet 24.5 34 0.0025 28.0 4.3 41 668-713 3-48 (198)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 23.1 1.2E+02 0.0086 22.7 6.9 59 120-189 4-62 (66)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 19.7 73 0.0053 25.0 5.2 39 27-67 23-61 (88)
5 d1nkpb_ a.38.1.1 (B:) Max prot 18.6 47 0.0034 25.9 3.7 39 27-68 19-57 (83)
6 d2elba1 a.238.1.1 (A:6-273) DC 16.0 1.8E+02 0.013 25.8 7.6 54 686-739 6-64 (268)
7 d1uklc_ a.38.1.1 (C:) SREBP-2 14.0 1.7E+02 0.013 21.6 5.9 48 28-96 7-55 (61)
8 d1s0pa_ a.192.1.1 (A:) N-termi 13.1 1.3E+02 0.0093 27.2 5.7 44 654-721 5-48 (176)
9 d1ybza1 a.130.1.1 (A:2-75) mon 12.8 1.1E+02 0.0083 23.4 4.6 53 262-321 2-54 (74)
10 d2etda1 a.29.9.1 (A:35-183) Hy 12.2 3.8E+02 0.028 22.4 10.8 78 79-161 4-81 (149)
No 1
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=58.56 E-value=24 Score=27.43 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003812 182 ISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQV 235 (793)
Q Consensus 182 La~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (793)
|..+..-+.++.+.|+..+.....+.. -+.++-==+..++.++|.|.++|...|
T Consensus 4 L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eL 59 (61)
T d1l2pa_ 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444333332 222333346778888999998888765
No 2
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.55 E-value=34 Score=28.04 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=26.6
Q ss_pred hhhcHHHHHHHhhhcCCCCC-----CCCchhhhcccchhhHHHHHHHHHHH
Q 003812 668 LQGKIDDICKRLHETGPEIS-----PEDSSTAKRRGDTKTLEHFLEETFQL 713 (793)
Q Consensus 668 L~~KiDdLCkRm~~sd~~~~-----~~~s~~~r~~~~t~~l~~FLeEtFqL 713 (793)
|.++||.||++....++..+ +|.++. | ..|+.+.|.+.|.-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~iIgI~G~~GS----G-KSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRS----G-KTTLANQLSQTLRE 48 (198)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTS----S-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEEECCCCC----C-HHHHHHHHHHHhcc
Confidence 57899999999977666332 111111 2 45888988877654
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=23.15 E-value=1.2e+02 Score=22.72 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003812 120 SERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIA 189 (793)
Q Consensus 120 ~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~ 189 (793)
.|+.||..++..+.+++. -++.+|+-.-|+--.-...+++++.+..++...+...+..-
T Consensus 4 ~E~~RL~K~l~kl~~~i~-----------~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l 62 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAE-----------RSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------HHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566655555555544 46667777777775555667777777777777777666554
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.71 E-value=73 Score=25.00 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=23.9
Q ss_pred HHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHH
Q 003812 27 CAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRV 67 (793)
Q Consensus 27 ~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~na 67 (793)
=+|..|+.|.++..+..+++. -.+|+.|.+|+..|.-..
T Consensus 23 ~~f~~Lr~llP~~~~~~k~sK--~~iL~~A~~yI~~L~~~~ 61 (88)
T d1nkpa_ 23 RSFFALRDQIPELENNEKAPK--VVILKKATAYILSVQAEE 61 (88)
T ss_dssp HHHHHHHTTCGGGTTCTTCCH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCccCH--HHHHHHHHHHHHHHHHHH
Confidence 357778877433333345553 346777999988776543
No 5
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.58 E-value=47 Score=25.92 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHHh
Q 003812 27 CAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQ 68 (793)
Q Consensus 27 ~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq 68 (793)
=+|..|+.|-++ .++.+++. -.+|+.|..|++.|-...+
T Consensus 19 ~~f~~L~~llP~-~~~~k~sK--~~iL~~A~~yI~~L~~~~~ 57 (83)
T d1nkpb_ 19 DSFHSLRDSVPS-LQGEKASR--AQILDKATEYIQYMRRKNH 57 (83)
T ss_dssp HHHHHHHTTSGG-GTTSCCCH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCCCCCH--HHHHHHHHHHHHHHHHHHH
Confidence 467888888321 33334443 2467778898887655443
No 6
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.05 E-value=1.8e+02 Score=25.83 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=37.9
Q ss_pred CCCCCchhhhcc-----cchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccccccc
Q 003812 686 ISPEDSSTAKRR-----GDTKTLEHFLEETFQLQRYIVSTGQKLMEVQSKIASGFVEFT 739 (793)
Q Consensus 686 ~~~~~s~~~r~~-----~~t~~l~~FLeEtFqLQry~v~TgQKlme~Qs~i~~~~~~~~ 739 (793)
+-..||+.||.. .+...++.+|...-..-.-++..|..+..-+...+.++..++
T Consensus 6 E~~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~L~~~~ 64 (268)
T d2elba1 6 ETLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYE 64 (268)
T ss_dssp GTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345689999954 444567777777777777777888888777777776665543
No 7
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.99 E-value=1.7e+02 Score=21.56 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHhhhc-cccCCCCchhhHHHHHHHHhHHHHHHHHHHHHhhccccchhhhHHhHHHHHHHHHHHHHHh
Q 003812 28 AFFALRML-SVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQRDGANGEKCKLSQKLDAAEREIEELKKL 96 (793)
Q Consensus 28 Af~AL~~L-~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq~e~~~g~~~~L~~kL~~AE~ei~eLKkr 96 (793)
.|.+|+.| |++.....|| .||..|.+|+.-| .......+.|+..|+..
T Consensus 7 ~f~~L~~lvP~~~~K~~Ka-----~iL~~Ai~YI~~L----------------q~~~~~L~~e~~~L~~~ 55 (61)
T d1uklc_ 7 KIIELKDLVMGTDAKMHKS-----GVLRKAIDYIKYL----------------QQVNHKLRQENMVLKLA 55 (61)
T ss_dssp HHHHHHHHHSCSSCCCCTT-----THHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcccHH-----HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Confidence 57788888 6543333344 3666788876544 34445555666666554
No 8
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=13.12 E-value=1.3e+02 Score=27.25 Aligned_cols=44 Identities=11% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhhhhhhhcHHHHHHHhhhcCCCCCCCCchhhhcccchhhHHHHHHHHHHHHHHHHHhh
Q 003812 654 LISLLNKQVGRYQSLQGKIDDICKRLHETGPEISPEDSSTAKRRGDTKTLEHFLEETFQLQRYIVSTG 721 (793)
Q Consensus 654 ~~sll~Kqv~RYQsL~~KiDdLCkRm~~sd~~~~~~~s~~~r~~~~t~~l~~FLeEtFqLQry~v~Tg 721 (793)
+=.+++..|+.|=.|+.||+.... .+...+..+|+.||....++
T Consensus 5 fD~~i~~~v~~~~~~s~~Igg~V~------------------------~~a~~v~~aF~~qr~~L~~a 48 (176)
T d1s0pa_ 5 FQNLVDQHITPFVALSKKLAPEVG------------------------NQVEQLVKAIDAEKALINTA 48 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHH------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHH------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999987643 35688899999999876543
No 9
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=12.82 E-value=1.1e+02 Score=23.41 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=43.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 003812 262 EIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELETERWKAASQS 321 (793)
Q Consensus 262 El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~erWkrlaE~ 321 (793)
.|..+|++++.=|.-|-.+| .+|-.+++++...|+.--..=.-.+||..+=+.
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll-------~~R~~~~~~I~~~K~~~~~~i~dp~RE~~il~~ 54 (74)
T d1ybza1 2 TLKLLRKEIDKIDNQIISLL-------KKRLEIAQAIGKIKKELNLPIEDRKREEEVLRR 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 57889999999999888888 467899999999998777666777888776543
No 10
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=12.24 E-value=3.8e+02 Score=22.42 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHH
Q 003812 79 LSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDME 158 (793)
Q Consensus 79 L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E 158 (793)
|..++..|-..|.-.=++|.+-...=..+|.-|+.||+.++..=-.+|..+..... + ..+...-.+|...+.-.-
T Consensus 4 l~~~v~~a~s~Idv~L~rR~dli~nLv~~vk~y~~~Ek~~l~~v~~~R~~~~~a~~-~----~~~~~~~~~l~~al~~l~ 78 (149)
T d2etda1 4 LEQEVQEKYSQIQNQLQRRADLIPNLVETVKGYAAHEKEILEEIANARAKLIGAKT-P----QESAQADAELSSALSRLL 78 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCCS-H----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-h----HHHHHHHHHHHHHHHHHH
Confidence 45677888888888888999888888899999999999999987777766533210 0 112334445555555544
Q ss_pred HHH
Q 003812 159 LLV 161 (793)
Q Consensus 159 ~l~ 161 (793)
.++
T Consensus 79 ~~~ 81 (149)
T d2etda1 79 AIA 81 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
Done!