BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003813
(793 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 182/696 (26%), Positives = 280/696 (40%), Gaps = 108/696 (15%)
Query: 86 SSLTTLDLSENEFQGQIPS--RLGNLTSLKYLDLSFNQFNSVVPGWLS---KLNDLEFLS 140
+SLT+LDLS N G + + LG+ + LK+L++S N + PG +S KLN LE L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 157
Query: 141 LQSNRLQG-NISSLGL-ENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ 198
L +N + G N+ L + ++ L +SGN ++ G + S R L+ N S
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVS--RCVNLEFLDVSSNNFST 214
Query: 199 DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG 258
I LG SA L+ LD+ ++ G + + L L++S+ G IP
Sbjct: 215 GI-PFLGDCSA-----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-- 266
Query: 259 QIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR 318
+ +L+YL L++N+ G + + L +GN VPPF
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-----GAVPPF-------- 313
Query: 319 SCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKF 378
S L L +SS S ++P + L++S N+ G +P+
Sbjct: 314 -----------FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 379 DSPSMPLVTNLGS---IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDC 435
+TNL + DLS+N SG I +CQ N ++ L N F+G+IP
Sbjct: 363 -------LTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPT 413
Query: 436 WMNWPXXXXXXXXXXXFTGSLPMSIGT------------------------XXXXXXXXX 471
N +G++P S+G+
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 472 XXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531
G IP+ +N T L + + N L G IP W+G R L IL L +N F G+ P
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPA 532
Query: 532 QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDA-- 589
+L SL LD+ N +GTIP + S + ++ + G +K A
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 590 LLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLF-------- 641
LL +G E + L+ +I+ + G N + L+ SYN+
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 642 ----------------TGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXX 685
+G IPD +G +R + LD S+N+L G IPQ+M
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 686 XXXXXGEIPSSTQLQSFGGSSFADND-LCGAPLPNC 720
G IP Q ++F + F +N LCG PLP C
Sbjct: 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 131/481 (27%), Positives = 197/481 (40%), Gaps = 37/481 (7%)
Query: 210 CVANELESLDLGSCQIFGHMTN--QLGRFKGLNFLDLSNTTMDGSIPLSLG-QIANLEYL 266
C A L SLDL + G +T LG GL FL++S+ T+D +S G ++ +LE L
Sbjct: 98 CSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 267 DLSKNELNGT--VSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP 324
DLS N ++G V + +L +GN + ++ + L L V S
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFST 214
Query: 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384
P +L L L IS ++S R ++ + LNIS NQ G +P P
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIP-------P 265
Query: 385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXX 444
L L+ N +G I + + LS NHF G +P + +
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGA---CDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 445 XXXXXXXFTGSLPM-SIGTXXXXXXXXXXXXXXXGIIPTSFNNFTI-LEALDMGENELVG 502
F+G LPM ++ G +P S N + L LD+ N G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 503 NI-PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
I P + L L L++N F G P L + L L +++N LSGTIP + + S
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 562 AMATTD------SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG---IDI 612
+ + ++ Y K +E +L E S L+ I +
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYV-----KTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS 672
S N +GE+P + L+ L L S N F+G IP +G RS+ LD + N +G IP +
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 673 M 673
M
Sbjct: 558 M 558
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 137/508 (26%), Positives = 199/508 (39%), Gaps = 109/508 (21%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
LG+ S LQ+LD+SG KL D +S + LK L ISS L L SL+
Sbjct: 219 LGDCSALQHLDISGN--KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQ 272
Query: 66 ELKLSFCKLH-HFPPLSSANFSSLTTLDLSENEFQGQIPSRLG----------------- 107
L L+ K P S +LT LDLS N F G +P G
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 108 --------NLTSLKYLDLSFNQFNSVVPGWLSKL-------------------------- 133
+ LK LDLSFN+F+ +P L+ L
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392
Query: 134 -NDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS---- 188
N L+ L LQ+N G I L N + + +L LS N L G IP+S G KL+
Sbjct: 393 KNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLW 450
Query: 189 -------------FSTGFTNLSQDISEILGIFSACVAN--ELESLDLGSCQIFGHMTNQL 233
+ L D +++ G + ++N L + L + ++ G + +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRA 293
GR + L L LSN + G+IP LG +L +LDL+ N NGT+ F K+
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 294 NGNSLIFKINPNWVPPFQLTG-----LGVRS---CRLGPRFPLWLQSQKKLNDLYISSTR 345
G ++ N G G+RS RL R P + S R
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS------------R 618
Query: 346 ISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIF 405
+ +++ FL++S N + G +PK + SMP + I +L +N +SGSI
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLF----ILNLGHNDISGSIP 673
Query: 406 HLICQGENFSKNIEFFQLSKNHFSGEIP 433
+ + + LS N G IP
Sbjct: 674 DEVGD----LRGLNILDLSSNKLDGRIP 697
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 135/298 (45%), Gaps = 27/298 (9%)
Query: 2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
IP LG+LS L+ DL + L + L + L+ L + +L+ S L ++
Sbjct: 434 IPSSLGSLSKLR--DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNC 489
Query: 62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
+L + LS +L P +L L LS N F G IP+ LG+ SL +LDL+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 122 FNSVVPGWLSK---------LNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDEL 172
FN +P + K + ++ ++++ ++ G NL Q + + L
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG--NLLEFQGIRSEQLNRL 607
Query: 173 GGKIPTSFGRFCKLKSFSTGFTN----LSQDISEILGIFSACVANELES------LDLGS 222
+ P + S F N + D+S + S + E+ S L+LG
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS--YNMLSGYIPKEIGSMPYLFILNLGH 665
Query: 223 CQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEI 280
I G + +++G +GLN LDLS+ +DG IP ++ + L +DLS N L+G + E+
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
S+ L +S+ L + P + L L+L N+ G IP +G+L L LDLS N+
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLG 154
+ +P +S L L + L +N L G I +G
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 182/696 (26%), Positives = 280/696 (40%), Gaps = 108/696 (15%)
Query: 86 SSLTTLDLSENEFQGQIPS--RLGNLTSLKYLDLSFNQFNSVVPGWLS---KLNDLEFLS 140
+SLT+LDLS N G + + LG+ + LK+L++S N + PG +S KLN LE L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 154
Query: 141 LQSNRLQG-NISSLGL-ENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ 198
L +N + G N+ L + ++ L +SGN ++ G + S R L+ N S
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVS--RCVNLEFLDVSSNNFST 211
Query: 199 DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG 258
I LG SA L+ LD+ ++ G + + L L++S+ G IP
Sbjct: 212 GI-PFLGDCSA-----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-- 263
Query: 259 QIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR 318
+ +L+YL L++N+ G + + L +GN VPPF
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-----GAVPPF-------- 310
Query: 319 SCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKF 378
S L L +SS S ++P + L++S N+ G +P+
Sbjct: 311 -----------FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 379 DSPSMPLVTNLGS---IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDC 435
+TNL + DLS+N SG I +CQ N ++ L N F+G+IP
Sbjct: 360 -------LTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPT 410
Query: 436 WMNWPXXXXXXXXXXXFTGSLPMSIGT------------------------XXXXXXXXX 471
N +G++P S+G+
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 472 XXXXXXGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531
G IP+ +N T L + + N L G IP W+G R L IL L +N F G+ P
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPA 529
Query: 532 QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDA-- 589
+L SL LD+ N +GTIP + S + ++ + G +K A
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 590 LLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLF-------- 641
LL +G E + L+ +I+ + G N + L+ SYN+
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 642 ----------------TGRIPDNIGVMRSIESLDFSANQLSGYIPQSMXXXXXXXXXXXX 685
+G IPD +G +R + LD S+N+L G IPQ+M
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 686 XXXXXGEIPSSTQLQSFGGSSFADN-DLCGAPLPNC 720
G IP Q ++F + F +N LCG PLP C
Sbjct: 710 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 130/481 (27%), Positives = 199/481 (41%), Gaps = 37/481 (7%)
Query: 210 CVANELESLDLGSCQIFGHMTN--QLGRFKGLNFLDLSNTTMDGSIPLSLG-QIANLEYL 266
C A L SLDL + G +T LG GL FL++S+ T+D +S G ++ +LE L
Sbjct: 95 CSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 267 DLSKNELNGT--VSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP 324
DLS N ++G V + +L +GN + ++ + L L V S
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFST 211
Query: 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384
P +L L L IS ++S R ++ + LNIS NQ G +P S+
Sbjct: 212 GIP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPLPLKSLQ 269
Query: 385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPXXXX 444
++ L+ N +G I + + LS NHF G +P + +
Sbjct: 270 YLS-------LAENKFTGEIPDFLSGA---CDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 445 XXXXXXXFTGSLPM-SIGTXXXXXXXXXXXXXXXGIIPTSFNNFTI-LEALDMGENELVG 502
F+G LPM ++ G +P S N + L LD+ N G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 503 NI-PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFS 561
I P + L L L++N F G P L + L L +++N LSGTIP + + S
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 562 AMATTD------SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG---IDI 612
+ + ++ Y K +E +L E S L+ I +
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYV-----KTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS 672
S N +GE+P + L+ L L S N F+G IP +G RS+ LD + N +G IP +
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 673 M 673
M
Sbjct: 555 M 555
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 137/508 (26%), Positives = 199/508 (39%), Gaps = 109/508 (21%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
LG+ S LQ+LD+SG KL D +S + LK L ISS L L SL+
Sbjct: 216 LGDCSALQHLDISGN--KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQ 269
Query: 66 ELKLSFCKLH-HFPPLSSANFSSLTTLDLSENEFQGQIPSRLG----------------- 107
L L+ K P S +LT LDLS N F G +P G
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 108 --------NLTSLKYLDLSFNQFNSVVPGWLSKL-------------------------- 133
+ LK LDLSFN+F+ +P L+ L
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 389
Query: 134 -NDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS---- 188
N L+ L LQ+N G I L N + + +L LS N L G IP+S G KL+
Sbjct: 390 KNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLW 447
Query: 189 -------------FSTGFTNLSQDISEILGIFSACVAN--ELESLDLGSCQIFGHMTNQL 233
+ L D +++ G + ++N L + L + ++ G + +
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRA 293
GR + L L LSN + G+IP LG +L +LDL+ N NGT+ F K+
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 294 NGNSLIFKINPNWVPPFQLTG-----LGVRS---CRLGPRFPLWLQSQKKLNDLYISSTR 345
G ++ N G G+RS RL R P + S R
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS------------R 615
Query: 346 ISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIF 405
+ +++ FL++S N + G +PK + SMP + I +L +N +SGSI
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLF----ILNLGHNDISGSIP 670
Query: 406 HLICQGENFSKNIEFFQLSKNHFSGEIP 433
+ + + LS N G IP
Sbjct: 671 DEVGD----LRGLNILDLSSNKLDGRIP 694
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 135/298 (45%), Gaps = 27/298 (9%)
Query: 2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSL 61
IP LG+LS L+ DL + L + L + L+ L + +L+ S L ++
Sbjct: 431 IPSSLGSLSKLR--DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNC 486
Query: 62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ 121
+L + LS +L P +L L LS N F G IP+ LG+ SL +LDL+ N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 122 FNSVVPGWLSK---------LNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDEL 172
FN +P + K + ++ ++++ ++ G NL Q + + L
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG--NLLEFQGIRSEQLNRL 604
Query: 173 GGKIPTSFGRFCKLKSFSTGFTN----LSQDISEILGIFSACVANELES------LDLGS 222
+ P + S F N + D+S + S + E+ S L+LG
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS--YNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 223 CQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEI 280
I G + +++G +GLN LDLS+ +DG IP ++ + L +DLS N L+G + E+
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
S+ L +S+ L + P + L L+L N+ G IP +G+L L LDLS N+
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLG 154
+ +P +S L L + L +N L G I +G
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 30/228 (13%)
Query: 523 NKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTD-SSDQSNDIFYASLG 581
N G P + +L L L + + N+SG IP ++ + T D S + + S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 582 DEK----IVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFS 637
I D + Y S L + IS+N +G++P NL L ++ S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 638 YNLFTG---------------RIPDN--------IGVMRSIESLDFSANQLSGYIPQSMX 674
N+ G + N +G+ +++ LD N++ G +PQ +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 675 XXXXXXXXXXXXXXXXGEIPSSTQLQSFGGSSFADND-LCGAPLPNCT 721
GEIP LQ F S++A+N LCG+PLP CT
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 117/267 (43%), Gaps = 37/267 (13%)
Query: 15 LDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKL 74
LDLSG N S L+ L L LYI +N LV P++ +L +L
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-------LVGPIPPAIAKLT----QL 103
Query: 75 HHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLN 134
H+ L ++ G IP L + +L LD S+N + +P +S L
Sbjct: 104 HY--------------LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 135 DLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFT 194
+L ++ NR+ G I + + + T + + L GKIP +F + + F
Sbjct: 150 NLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFA------NLNLAFV 202
Query: 195 NLSQDISEILGIFSACVANE--LESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGS 252
+LS+++ E G S ++ + + L + + ++G K LN LDL N + G+
Sbjct: 203 DLSRNMLE--GDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGT 259
Query: 253 IPLSLGQIANLEYLDLSKNELNGTVSE 279
+P L Q+ L L++S N L G + +
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 100/235 (42%), Gaps = 39/235 (16%)
Query: 322 LGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSP 381
+GP P + +L+ LYI+ T +S IP F + I L+ S N + G +P P
Sbjct: 90 VGP-IPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLP----P 143
Query: 382 SMPLVTNL-GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWP 440
S+ + NL G FD N +SG+I +FSK +S+N +G+IP + N
Sbjct: 144 SISSLPNLVGITFD--GNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIPPTFANL- 197
Query: 441 XXXXXXXXXXXFTGSLPMSIGTXXXXXXXXXXXXXXXGIIPTSFNNFTILEALDMGENEL 500
G + G+ I + N+ A D+G+ L
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQK-----------IHLAKNSL----AFDLGKVGL 242
Query: 501 VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR 555
N L L+LR+N+ +G P L +L L L+V++NNL G IP+
Sbjct: 243 SKN-----------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
L N++YL L G KLH IS L L+ L +L ++ L + V + L +LKEL
Sbjct: 62 LPNVRYLALGGN--KLH--DISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELV 115
Query: 69 LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG 128
L +L P ++LT L+L+ N+ Q LT+L LDLS+NQ S+ G
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 129 WLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
KL L+ L L N+L+ + + LTS+Q + L N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 133 LNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG 192
L ++ +L+L N+L +IS+L + LT++ L+L+GN +L+S G
Sbjct: 62 LPNVRYLALGGNKLH-DISAL--KELTNLTYLILTGN---------------QLQSLPNG 103
Query: 193 FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGS 252
+ ++ E++ V N+L+SL G +F +TN L +L+L++ +
Sbjct: 104 VFDKLTNLKELV-----LVENQLQSLPDG---VFDKLTN-------LTYLNLAHNQLQSL 148
Query: 253 IPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSL 298
++ NL LDLS N+L ++ E F LT+L R N L
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
V + L +L EL LS+ +L P + L L L +N+ + LTSL+Y+
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211
Query: 117 LSFNQFNSVVPG------WLSK 132
L N ++ PG W++K
Sbjct: 212 LHDNPWDCTCPGIRYLSEWINK 233
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
L N++YL L G KLH IS L L+ L +L ++ L + V + L +LKEL
Sbjct: 62 LPNVRYLALGGN--KLH--DISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELV 115
Query: 69 LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG 128
L +L P ++LT L L N+ Q LT+L LDL NQ S+ G
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 129 WLSKLNDLEFLSLQSNRLQ 147
KL L+ LSL N+L+
Sbjct: 176 VFDKLTQLKQLSLNDNQLK 194
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 134/322 (41%), Gaps = 36/322 (11%)
Query: 10 SNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINS--LPSLKEL 67
+ LQ LDL+ + K S + GL+LLK L +S + D L I++ PSL L
Sbjct: 275 TQLQELDLTATHLK---GLPSGMKGLNLLKKLVLSVNHF----DQLCQISAANFPSLTHL 327
Query: 68 KLS-FCKLHHFPPLSSANFSSLTTLDLSENEFQGQ--IPSRLGNLTSLKYLDLSFNQFNS 124
+ K H +L TLDLS N+ + +L NL+ L+ L+LS N+
Sbjct: 328 YIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG 387
Query: 125 VVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTL------LLSGNDELGGKIPT 178
+ + LE L L RL N +NL +Q L L + N L +P
Sbjct: 388 LQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV 447
Query: 179 SFGRFCKLKSFSTGF---TNLSQDIS--EILGIFSAC-----------VANELESLDLGS 222
K F G TNL Q + E+L I S+C ++ +DL
Sbjct: 448 LRHLNLKGNHFQDGTITKTNLLQTVGSLEVL-ILSSCGLLSIDQQAFHSLGKMSHVDLSH 506
Query: 223 CQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHF 282
+ + L KG+ +L+L+ +++ P L ++ ++LS N L+ T S IHF
Sbjct: 507 NSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHF 565
Query: 283 VNLTKLVTFRANGNSLIFKINP 304
+ K + G+ NP
Sbjct: 566 LTWYKENLHKLEGSEETTCANP 587
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 30/224 (13%)
Query: 75 HHFPPLSSANF---SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLS 131
H F +SS F + L LDL+ +G +PS + L LK L LS N F+ L
Sbjct: 261 HRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQ-----LC 314
Query: 132 KLNDLEFLSLQSNRLQGNISSLGL-----ENLTSIQTLLLSGNDELGGKIPTSFGRFCKL 186
+++ F SL ++GN+ L L E L ++QTL LS ND I S +L
Sbjct: 315 QISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHND-----IEASDCCSLQL 369
Query: 187 KSFSTGFT-NLSQDISEILGIFSACVAN--ELESLDLGSCQIFGHMTNQLGRFKGLNFLD 243
K+ S T NLS + E LG+ S +LE LDL ++ H+ F+ L+FL
Sbjct: 370 KNLSHLQTLNLSHN--EPLGLQSQAFKECPQLELLDLAFTRL--HINAPQSPFQNLHFLQ 425
Query: 244 LSNTT---MDGSIPLSLGQIANLEYLDLSKNEL-NGTVSEIHFV 283
+ N T +D S L + L +L+L N +GT+++ + +
Sbjct: 426 VLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLL 469
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
V + L +L EL+L +L PP + + LT L L NE Q LTSLK L
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
L NQ V G KL +L+ L L +N+L+ + ++L ++ L L N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
+ L +L+ L ++ KL P +L L L N+ + P +LT L YL
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
L +N+ S+ G KL L+ L L +N+L+ + + LT ++TL L N
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
V + L SLKEL+L +L P + + L TL L N+ + +L LK L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 117 LSFNQFNSVVPG------WLSKLND 135
L N ++ G WL K D
Sbjct: 212 LQENPWDCTCNGIIYMAKWLKKKAD 236
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 128/280 (45%), Gaps = 36/280 (12%)
Query: 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
L+NL+YL+L+G IS LS L L +LYI + ++ S + +L +L+EL
Sbjct: 65 LTNLEYLNLNGNQIT----DISPLSNLVKLTNLYIGTNKITDIS----ALQNLTNLRELY 116
Query: 69 LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPG 128
L+ + PL AN + +L+L N + S L N T L YL ++ ++ V P
Sbjct: 117 LNEDNISDISPL--ANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESKVKDVTP- 172
Query: 129 WLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS 188
++ L DL LSL N+++ +IS L +LTS+ N ++ P +L S
Sbjct: 173 -IANLTDLYSLSLNYNQIE-DISPLA--SLTSLHYFTAYVN-QITDITP--VANXTRLNS 225
Query: 189 FSTG---------FTNLSQ------DISEILGIFSACVANELESLDLGSCQIFGHMTNQL 233
G NLSQ ++I I + +L+ L++GS QI + L
Sbjct: 226 LKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISD--ISVL 283
Query: 234 GRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273
LN L L+N + +G + NL L LS+N +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
L NL+NL+ L L+ D IS +S L+ L Y ++ + L +++ L
Sbjct: 106 LQNLTNLREL-------YLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLN 158
Query: 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
L ++ K+ P+ AN + L +L L+ N+ + P L +LTSL Y NQ +
Sbjct: 159 YLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214
Query: 126 VP-GWLSKLNDLEF 138
P ++LN L+
Sbjct: 215 TPVANXTRLNSLKI 228
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL +A + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 50 TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N L + L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 169 NGLENL---DTLLLQEN 182
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ N + G L+ L +L+ L LQ N L
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL +A + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 50 TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N L + L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 169 NGLENL---DTLLLQEN 182
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ N + G L+ L +L+ L LQ N L
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL +A + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 50 TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N L + L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 169 NGLENL---DTLLLQEN 182
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ N + G L+ L +L+ L LQ N L
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL + + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N+L + L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 169 NGLENL---DTLLLQEN 182
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ NQ + G L+ L +L+ L LQ N L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL + + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N+L + L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 169 NGLENL---DTLLLQEN 182
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ NQ + G L+ L +L+ L LQ N L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL + + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N+L + L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 169 NGLENL---DTLLLQEN 182
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ NQ + G L+ L +L+ L LQ N L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL + + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N+L + L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 169 NGLENL---DTLLLQEN 182
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ NQ + G L+ L +L+ L LQ N L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL + + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N L + L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 169 NGLENL---DTLLLQEN 182
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ N + G L+ L +L+ L LQ N L
Sbjct: 154 SLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
V + L SL +L L KL P +SLT L+LS N+ Q LT LK L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
L+ NQ S+ G KL L+ L L N+L+ ++ + LTS+Q + L N
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 89 TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG 148
T LDL N + LTSL L L N+ S+ G +KL L +L+L +N+LQ
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 149 NISSLGLENLTSIQTLLLSGN 169
++ + + LT ++ L L+ N
Sbjct: 90 SLPNGVFDKLTQLKELALNTN 110
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
V + L LKEL L+ +L P + L L L +N+ + LTSL+Y+
Sbjct: 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154
Query: 117 LSFNQFNSVVPG------WLSK 132
L N ++ PG W++K
Sbjct: 155 LHDNPWDCTCPGIRYLSEWINK 176
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL + + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 51 TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 109
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N L + L
Sbjct: 110 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 169
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 170 NGLENL---DTLLLQEN 183
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 95 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 154
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ N + G L+ L +L+ L LQ N L
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 36 SLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94
+L+ + ++ +NL + + L ++ +LP L L LS +L P L +LT LD+S
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVS 108
Query: 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL- 153
N L L L+ L L N+ ++ PG L+ LE LSL +N L + L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 154 -GLENLTSIQTLLLSGN 169
GLENL TLLL N
Sbjct: 169 NGLENL---DTLLLQEN 182
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 56 LVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
L+ +LP+L L +SF +L P + L L L NE + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
L+ N + G L+ L +L+ L LQ N L
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Query: 39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEF 98
+ L + S L+ SD+ L L L L + +L + + L TL L+ N+
Sbjct: 38 EKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 99 QGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL 158
+LT L L L NQ S+ G +L L+ L L +N+LQ +I + + L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 159 TSIQTLLLSGNDELGGKIPTSFGRFCKLKSFS 190
T++QTL LS N +L +F R KL++ +
Sbjct: 155 TNLQTLSLSTN-QLQSVPHGAFDRLGKLQTIT 185
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
V + L L L L+ +L P + + L L L N+ + LT LK L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
L+ NQ S+ G KL +L+ LSL +N+LQ ++ + L +QT+ L GN
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Query: 39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEF 98
+ L + S L+ SD+ L L L L + +L + + L TL L+ N+
Sbjct: 38 EKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 99 QGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL 158
+LT L L L NQ S+ G +L L+ L L +N+LQ +I + + L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 159 TSIQTLLLSGNDELGGKIPTSFGRFCKLKSFS 190
T++QTL LS N +L +F R KL++ +
Sbjct: 155 TNLQTLSLSTN-QLQSVPHGAFDRLGKLQTIT 185
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
V + L L L L+ +L P + + L L L N+ + LT LK L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
L+ NQ S+ G KL +L+ LSL +N+LQ ++ + L +QT+ L GN
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
L L++LD N K ++ +LS L L +L IS + A + + N L SL+ LK
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLK 451
Query: 69 LSFCKLHH-FPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP 127
++ F P +LT LDLS+ + + P+ +L+SL+ L+++ NQ SV
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Query: 128 GWLSKLNDLEFLSLQSN 144
G +L L+ + L +N
Sbjct: 512 GIFDRLTSLQKIWLHTN 528
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 10 SNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKL 69
++L+YLDLS F S GL L+HL NL + S+ V SL +L L +
Sbjct: 373 TSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDI 428
Query: 70 SFCKLHHFPPLSSAN-----FSSLTTLDLSENEFQGQ-IPSRLGNLTSLKYLDLSFNQFN 123
S H + N SSL L ++ N FQ +P L +L +LDLS Q
Sbjct: 429 S-----HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 124 SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
+ P + L+ L+ L++ SN+L+ + + LTS+Q + L N
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWLHTN 528
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 96/247 (38%), Gaps = 56/247 (22%)
Query: 65 KELKLSFCKLHHFPPL-------------------SSANFSSLTTLDLSEN--EFQGQIP 103
+ L+L CK FP L S + SL LDLS N F+G
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 104 SRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQT 163
TSLKYLDLSFN ++ +L L LE L Q + L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNL----------------- 408
Query: 164 LLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEIL--GIFSACVANELESLDLG 221
K + F F L++ + ++S + + GIF+ + E+ +
Sbjct: 409 -----------KQMSEFSVFLSLRNLI--YLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 222 SCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIH 281
S Q + + + L FLDLS ++ P + +++L+ L+++ N+L I
Sbjct: 456 SFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI- 513
Query: 282 FVNLTKL 288
F LT L
Sbjct: 514 FDRLTSL 520
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 57 VINSLP-SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
+ ++LP S K L LSF L H S +F L LDLS E Q +L+ L L
Sbjct: 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK 175
L+ N S+ G S L+ L+ L L ++ + + +L +++ L ++ N K
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 176 IPTSFGRFCKLK 187
+P F L+
Sbjct: 141 LPEYFSNLTNLE 152
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLL--VINSLPSLKE 66
L NL YLD+S + ++ + I +GLS L+ L ++ + ++ L + L +L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAG---NSFQENFLPDIFTELRNLTF 474
Query: 67 LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVV 126
L LS C+L P + + SSL L+++ N+ + LTSL+ + L N ++
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 127 P------GWLSK 132
P WL+K
Sbjct: 535 PRIDYLSRWLNK 546
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 12 LQYLDLSGYNFKLHAD----TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
LQ LDLS + D ++S LS L L + I S+ L S ++SL L +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG----LSSLQKLVAV 108
Query: 68 KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQFNSV 125
+ + L +FP + +L L+++ N Q ++P NLT+L++LDLS N+ S+
Sbjct: 109 ETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 34/229 (14%)
Query: 75 HHFPPLSSANFSSLT---TLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLS 131
H F LSS+ F T LDL+ G +PS + + SLK L L+ N F+ L
Sbjct: 263 HRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQ-----LC 316
Query: 132 KLNDLEFLSLQSNRLQGNISSLG-----LENLTSIQTLLLSGNDELGGKIPTSFGRFCKL 186
++N F SL+ ++GN+ L LE L ++Q L LS +D I S +L
Sbjct: 317 QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSD-----IEASDCCNLQL 371
Query: 187 KSFST-GFTNLSQDISEILGI----FSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
K+ + NLS + E LG+ F C +LE LD+ + H+ F+ L+
Sbjct: 372 KNLRHLQYLNLSYN--EPLGLEDQAFKECP--QLELLDVAFTHL--HVKAPHSPFQNLHL 425
Query: 242 ---LDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL-NGTVSEIHFVNLT 286
L+LS+ +D S L + +L +L+L N +G++S+ + + +
Sbjct: 426 LRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMV 474
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 123/315 (39%), Gaps = 49/315 (15%)
Query: 10 SNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVIN--SLPSLKEL 67
+ +Q LDL+ + S + G++ LK L +++ + D L IN S PSL++L
Sbjct: 277 TRVQELDLTAAHLN---GLPSGIEGMNSLKKLVLNA----NSFDQLCQINAASFPSLRDL 329
Query: 68 --KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQ--IPSRLGNLTSLKYLDLSFNQFN 123
K + KL +L LDLS ++ + +L NL L+YL+LS+N+
Sbjct: 330 YIKGNMRKLD-LGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL 388
Query: 124 SVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN--DELGGKIPTSFG 181
+ + LE L + L +NL ++ L LS D +
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 182 RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241
L F + S + +L + + LE L L SC + + +N
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGS-----LEILILSSCNLLSIDQQAFHGLRNVNH 503
Query: 242 LDLSNTTMDGSI-----------------------PLSLGQIANLEYLDLSKNELNGTVS 278
LDLS+ ++ G P L ++ ++LS N L+ T S
Sbjct: 504 LDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCS 563
Query: 279 EIHFV-----NLTKL 288
IHF+ NL KL
Sbjct: 564 NIHFITWYKENLHKL 578
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 15/206 (7%)
Query: 68 KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP 127
+ C F + + LDL +N + + L+ L+L+ N ++V P
Sbjct: 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 128 GWLSKLNDLEFLSLQSNRLQ----GNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRF 183
G + L +L L L+SNRL+ G + GL NLT + +++ + F
Sbjct: 74 GAFNNLFNLRTLGLRSNRLKLIPLGVFT--GLSNLTKLDI----SENKIVILLDYMFQDL 127
Query: 184 CKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLD 243
LKS G +L IS FS N LE L L C + T L GL L
Sbjct: 128 YNLKSLEVGDNDLVY-ISH--RAFSG--LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 244 LSNTTMDGSIPLSLGQIANLEYLDLS 269
L + ++ S ++ L+ L++S
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEIS 208
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 18/245 (7%)
Query: 59 NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118
N+L +L+ L L +L P S+LT LD+SEN+ + +L +LK L++
Sbjct: 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136
Query: 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDEL--GGKI 176
N + S LN LE L+L+ + N++S+ E L+ + L++ L
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLE----KCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 177 PTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRF 236
SF R +LK ++ + L SL + C + +
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTP-----NCLYGLNLTSLSITHCNLTAVPYLAVRHL 247
Query: 237 KGLNFLDLSN---TTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRA 293
L FL+LS +T++GS+ L ++ L+ + L +L V F L L
Sbjct: 248 VYLRFLNLSYNPISTIEGSM---LHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNV 303
Query: 294 NGNSL 298
+GN L
Sbjct: 304 SGNQL 308
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 30/176 (17%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
L NL+NL L+LS IS LSGL+ L+ L SS ++ +D L + +L +L+
Sbjct: 125 LKNLTNLNRLELSSNTIS----DISALSGLTSLQQLSFSS---NQVTD-LKPLANLTTLE 176
Query: 66 ELKLS---------FCKLHHFPPLSSAN--------FSSLTTLD-LSENEFQGQIPSRLG 107
L +S KL + L + N LT LD LS N Q + L
Sbjct: 177 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 236
Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQ 162
+LT+L LDL+ NQ +++ P LS L L L L +N++ NIS L GL LT+++
Sbjct: 237 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLE 289
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 93/228 (40%), Gaps = 45/228 (19%)
Query: 61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
L +L ++ S +L PL N + L + ++ N+ P L NLT+L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
Q + P L L +L L L SN + +IS+L LTS+Q L S N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-SDISALS--GLTSLQQLSFSSN----------- 161
Query: 181 GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN 240
+ LK + NL+ LE LD+ S ++ L + L
Sbjct: 162 -QVTDLKPLA----NLT----------------TLERLDISSNKVSDISV--LAKLTNLE 198
Query: 241 FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
L +N + PL G + NL+ L L+ N+L + NLT L
Sbjct: 199 SLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 52/164 (31%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
LG L+NL L L+G K I L+ L+ L L +++ +S +L ++ L L
Sbjct: 213 LGILTNLDELSLNGNQLK----DIGTLASLTNLTDLDLANNQIS----NLAPLSGLTKLT 264
Query: 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP---------------------- 103
ELKL ++ + PL A ++LT L+L+EN+ + P
Sbjct: 265 ELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Query: 104 --------------------SRLGNLTSLKYLDLSFNQFNSVVP 127
S L NLT++ +L NQ + + P
Sbjct: 323 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 30/176 (17%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
L NL+NL L+LS IS LSGL+ L+ L SS ++ +D L + +L +L+
Sbjct: 125 LKNLTNLNRLELSSNTIS----DISALSGLTSLQQLSFSS---NQVTD-LKPLANLTTLE 176
Query: 66 ELKLS---------FCKLHHFPPLSSAN--------FSSLTTLD-LSENEFQGQIPSRLG 107
L +S KL + L + N LT LD LS N Q + L
Sbjct: 177 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 236
Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQ 162
+LT+L LDL+ NQ +++ P LS L L L L +N++ NIS L GL LT+++
Sbjct: 237 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLE 289
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 93/228 (40%), Gaps = 45/228 (19%)
Query: 61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
L +L ++ S +L PL N + L + ++ N+ P L NLT+L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
Q + P L L +L L L SN + +IS+L LTS+Q L S N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-SDISALS--GLTSLQQLSFSSN----------- 161
Query: 181 GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN 240
+ LK + NL+ LE LD+ S ++ L + L
Sbjct: 162 -QVTDLKPLA----NLT----------------TLERLDISSNKVSDISV--LAKLTNLE 198
Query: 241 FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
L +N + PL G + NL+ L L+ N+L + NLT L
Sbjct: 199 SLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 52/164 (31%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
LG L+NL L L+G K I L+ L+ L L +++ +S +L ++ L L
Sbjct: 213 LGILTNLDELSLNGNQLK----DIGTLASLTNLTDLDLANNQIS----NLAPLSGLTKLT 264
Query: 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP---------------------- 103
ELKL ++ + PL A ++LT L+L+EN+ + P
Sbjct: 265 ELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Query: 104 --------------------SRLGNLTSLKYLDLSFNQFNSVVP 127
S L NLT++ +L NQ + + P
Sbjct: 323 VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 30/176 (17%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
L NL+NL L+LS IS LSGL+ L+ L SS ++ +D L + +L +L+
Sbjct: 125 LKNLTNLNRLELSSNTIS----DISALSGLTSLQQLNFSS---NQVTD-LKPLANLTTLE 176
Query: 66 ELKLS---------FCKLHHFPPLSSAN--------FSSLTTLD-LSENEFQGQIPSRLG 107
L +S KL + L + N LT LD LS N Q + L
Sbjct: 177 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 236
Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQ 162
+LT+L LDL+ NQ +++ P LS L L L L +N++ NIS L GL LT+++
Sbjct: 237 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLE 289
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 93/228 (40%), Gaps = 45/228 (19%)
Query: 61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
L +L ++ S +L PL N + L + ++ N+ P L NLT+L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
Q + P L L +L L L SN + +IS+L LTS+Q L S N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-SDISALS--GLTSLQQLNFSSN----------- 161
Query: 181 GRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLN 240
+ LK + NL+ LE LD+ S ++ L + L
Sbjct: 162 -QVTDLKPLA----NLT----------------TLERLDISSNKVSDISV--LAKLTNLE 198
Query: 241 FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
L +N + PL G + NL+ L L+ N+L + NLT L
Sbjct: 199 SLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 52/164 (31%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
LG L+NL L L+G K I L+ L+ L L +++ +S +L ++ L L
Sbjct: 213 LGILTNLDELSLNGNQLK----DIGTLASLTNLTDLDLANNQIS----NLAPLSGLTKLT 264
Query: 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP---------------------- 103
ELKL ++ + PL A ++LT L+L+EN+ + P
Sbjct: 265 ELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Query: 104 --------------------SRLGNLTSLKYLDLSFNQFNSVVP 127
S L NLT++ +L NQ + + P
Sbjct: 323 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
V +SL +LKEL L +L P + + LT LDL N+ + L LK L
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
+ N+ +P + +L L L+L N+L+ +I + L+S+ L GN
Sbjct: 119 MCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 31/178 (17%)
Query: 20 YNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPP 79
Y F + ++T SGL + L +++ +LS+ L+ L +LK+L LS K +
Sbjct: 265 YFFNISSNTFHCFSGL---QELDLTATHLSELPSGLV---GLSTLKKLVLSANKFENLCQ 318
Query: 80 LSSANFSSLTTLDLSENEFQGQIPSR-LGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEF 138
+S++NF SLT L + N + ++ + L NL +L+ LDLS +D+E
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH--------------DDIE- 363
Query: 139 LSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNL 196
+ +L L NL+ +Q+L LS N+ L K +F +L+ FT L
Sbjct: 364 --------TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRL 412
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 75 HHFPPLSSANF---SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLS 131
H+F +SS F S L LDL+ ++PS L L++LK L LS N+F ++ S
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISAS 322
Query: 132 KLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND-ELGGKIPTSFGRFCKLKSFS 190
L LS++ N + + + LENL +++ L LS +D E L+S +
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382
Query: 191 TGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF---LDLSNT 247
+ ++ +S F C +LE LDL ++ + + F+ L+ L+LS++
Sbjct: 383 LSY---NEPLSLKTEAFKECP--QLELLDLAFTRL--KVKDAQSPFQNLHLLKVLNLSHS 435
Query: 248 TMDGSIPLSLGQIANLEYLDLSKNE 272
+D S + L++L+L N
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNH 460
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 129/331 (38%), Gaps = 41/331 (12%)
Query: 256 SLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGL 315
+ ++ NL +LDL++ ++ + E F + +L T N LIF P L L
Sbjct: 52 TFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110
Query: 316 -----GVRSCRLGPRFPLWLQSQKKLNDLYISSTRISA-KIPRRFWNSIFQYWFLNISGN 369
G+ S P L +QK L LY+ S IS+ K+P+ F + L+ N
Sbjct: 111 FFIQTGISSIDFIP-----LHNQKTLESLYLGSNHISSIKLPKGFPTEKLK--VLDFQNN 163
Query: 370 QMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS----GSIFHLICQGENFSKNIEFFQLSK 425
++ + K D S+ TNL +L+ N ++ G+ + Q NF + K
Sbjct: 164 AIH-YLSKEDMSSLQQATNLS--LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220
Query: 426 NHFSGEIPDCWM-NWPXXXXXXXXXXXFTGSLPMSIGTXXXXXXXXXXXXXXXGIIPTSF 484
+ I W+ + F G MS+ + I +F
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES------INLQKHYFFNISSNTF 274
Query: 485 NNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDV 544
+ F+ L+ LD+ L +P+ + S L L L +NKF LC++++ +
Sbjct: 275 HCFSGLQELDLTATHL-SELPSGLV-GLSTLKKLVLSANKFEN-----LCQISASNFPSL 327
Query: 545 AYNNLSGTIPR------CINNFSAMATTDSS 569
+ ++ G R C+ N + D S
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLS 358
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 8 NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
NL L+ L+LS + ++ + GL L+HL + + K + + NSL +L L
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQL--FDGLPALQHLNLQGNHFPKGN--IQKTNSLQTLGRL 478
Query: 68 K---LSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNS 124
+ LSFC L + + + +DLS N L +L + YL+L+ N +
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537
Query: 125 VVPGWLSKLNDLEFLSLQSNRLQGNISSL 153
++P L L+ ++L+ N L S++
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDCTCSNI 566
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 38/215 (17%)
Query: 198 QDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSL 257
+DIS +F +ES++L F +N F GL LDL+ T + +P L
Sbjct: 241 EDISP--AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGL 297
Query: 258 GQIANLEYLDLSKNELNG--TVSEIHFVNLTKLVTFRANGNSLIF--------------- 300
++ L+ L LS N+ +S +F +LT L + + N L
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHL-SIKGNTKRLELGTGCLENLENLRELD 356
Query: 301 ----KINPNWVPPFQLTGLG-VRSCRLGPRFPLWLQSQK-----KLNDLYISSTRISAKI 350
I + QL L ++S L PL L+++ +L L ++ TR+ K
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416
Query: 351 PRRFWNSI-------FQYWFLNISGNQMYGGVPKF 378
+ + ++ + L+IS Q++ G+P
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 100/255 (39%), Gaps = 23/255 (9%)
Query: 64 LKELKLSFCKLHH--FPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFN 120
L EL+L FC L N +LT LDLS+N+ + + G L SLK +D S N
Sbjct: 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Query: 121 QFNSVVPGWLSKL--NDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELG-GKIP 177
Q V L L L F SL +N L +S + + + ++L D G G
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218
Query: 178 TSFGRFCKLKSFSTGFTNLSQDISEILG--------------IFSACVANELESLDLGSC 223
G F S S F+ + I+G F+ + + LDL
Sbjct: 219 DITGNFSNAISKSQAFSLILA--HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276
Query: 224 QIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFV 283
+F + K L L+L+ ++ + + NL+ L+LS N L G + +F
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFY 335
Query: 284 NLTKLVTFRANGNSL 298
L K+ N +
Sbjct: 336 GLPKVAYIDLQKNHI 350
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 87 SLTTLDLSENEFQGQIPSRL-----GNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSL 141
SL L L EN Q + L L+ L+ L L+ N NS+ PG S L L LSL
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 142 QSNRL 146
SNRL
Sbjct: 512 NSNRL 516
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
L L++LD N K ++ +LS +L+ +L IS + A + + N L SL+ LK
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLI-YLDISHTHTRVAFNG--IFNGLSSLEVLK 475
Query: 69 LSFCKLHH-FPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP 127
++ F P +LT LDLS+ + + P+ +L+SL+ L++S N F S+
Sbjct: 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535
Query: 128 GWLSKLNDLEFLSLQSNR--------LQGNISSLGLENLT 159
LN L+ L N LQ SSL NLT
Sbjct: 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 57 VINSLP-SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
+ ++LP S K L LSF L H S +F L LDLS E Q +L+ L L
Sbjct: 46 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 105
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK 175
L+ N S+ G S L+ L+ L L ++ + + +L +++ L ++ N K
Sbjct: 106 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK 164
Query: 176 IPTSFGRFCKLK 187
+P F L+
Sbjct: 165 LPEYFSNLTNLE 176
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 12 LQYLDLSGYNFKLHAD----TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
LQ LDLS + D ++S LS L L + I S+ L S ++SL L +
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG----LSSLQKLVAV 132
Query: 68 KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQFNSV 125
+ + L +FP + +L L+++ N Q ++P NLT+L++LDLS N+ S+
Sbjct: 133 ETNLASLENFPI---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 484 FNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILD 543
FN + LE L M N N + L L+L + P L+SLQ+L+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 544 VAYNNLSG--TIP-RCINNFSAM 563
+++NN T P +C+N+ +
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVL 547
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 63 SLKELKLSFCKLH---HFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF 119
++K L LSF K+ H + AN L N +G LG SL++LDLS
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSD 109
Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLLLSGNDELGGKI 176
N +S+ W L+ L++L+L N Q ++SL NLT++QTL + GN E +I
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRI-GNVETFSEI 165
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 102 IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI 161
IPS G ++K LDLSFN+ + G L +L+ L L+S+R+ I +L S+
Sbjct: 46 IPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSL 102
Query: 162 QTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACV-ANELESLDL 220
+ L LS N L + FG LK + NL + + LG+ S L++L +
Sbjct: 103 EHLDLSDN-HLSSLSSSWFGPLSSLK-----YLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
Query: 221 GSCQIFGHMTN-QLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE 272
G+ + F + LN L++ ++ SL I ++ +L L +E
Sbjct: 157 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 209
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
L L++LD N K ++ +LS +L+ +L IS + A + + N L SL+ LK
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLI-YLDISHTHTRVAFNG--IFNGLSSLEVLK 451
Query: 69 LSFCKLHH-FPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP 127
++ F P +LT LDLS+ + + P+ +L+SL+ L++S N F S+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
Query: 128 GWLSKLNDLEFLSLQSNR--------LQGNISSLGLENLT 159
LN L+ L N LQ SSL NLT
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 89/230 (38%), Gaps = 55/230 (23%)
Query: 65 KELKLSFCKLHHFPPL-------------------SSANFSSLTTLDLSEN--EFQGQIP 103
+ L+L CK FP L S + SL LDLS N F+G
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 104 SRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQT 163
TSLKYLDLSFN ++ +L L LE L Q + L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNL----------------- 408
Query: 164 LLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEIL--GIFSACVANELESLDLG 221
K + F F L++ + ++S + + GIF+ + E+ +
Sbjct: 409 -----------KQMSEFSVFLSLRNLI--YLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 222 SCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKN 271
S Q + + + L FLDLS ++ P + +++L+ L++S N
Sbjct: 456 SFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 57 VINSLP-SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
+ ++LP S K L LSF L H S +F L LDLS E Q +L+ L L
Sbjct: 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK 175
L+ N S+ G S L+ L+ L L ++ + + +L +++ L ++ N K
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 176 IPTSFGRFCKLK 187
+P F L+
Sbjct: 141 LPEYFSNLTNLE 152
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 12 LQYLDLSGYNFKLHAD----TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
LQ LDLS + D ++S LS L L + I S+ L S ++SL L +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG----LSSLQKLVAV 108
Query: 68 KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQFNSVV 126
+ + L +FP + +L L+++ N Q ++P NLT+L++LDLS N+ S+
Sbjct: 109 ETNLASLENFPI---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 127 PGWLSKLNDL 136
L L+ +
Sbjct: 166 CTDLRVLHQM 175
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 484 FNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILD 543
FN + LE L M N N + L L+L + P L+SLQ+L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 544 VAYNNLSG--TIP-RCINNFSAM 563
+++NN T P +C+N+ +
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVL 523
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 63 SLKELKLSFCKLH---HFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF 119
++K L LSF K+ H + AN L N +G LG SL++LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSD 83
Query: 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLLLSGNDELGGKI 176
N +S+ W L+ L++L+L N Q ++SL NLT++QTL + GN E +I
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRI-GNVETFSEI 139
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 102 IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI 161
IPS G ++K LDLSFN+ + G L +L+ L L+S+R+ I +L S+
Sbjct: 20 IPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSL 76
Query: 162 QTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACV-ANELESLDL 220
+ L LS N L + FG LK + NL + + LG+ S L++L +
Sbjct: 77 EHLDLSDN-HLSSLSSSWFGPLSSLK-----YLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Query: 221 GSCQIFGHMTN-QLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE 272
G+ + F + LN L++ ++ SL I ++ +L L +E
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 131/329 (39%), Gaps = 75/329 (22%)
Query: 4 HQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASD-SLLVINSLP 62
+ N S LQ+LDLS + D +W GL L +L ++ + S S + SL
Sbjct: 50 YSFSNFSELQWLDLSRCEIETIEDK-AW-HGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107
Query: 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQ 121
+L ++ L FP +L L+++ N ++P+ NLT+L ++DLS+N
Sbjct: 108 NLVAVETKLASLESFPI---GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 122 FNSVVPGWLSKLNDLEFLS------------------LQSNRLQG--------------- 148
++ +NDL+FL +Q QG
Sbjct: 165 IQTIT------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSS 218
Query: 149 NISSLGLENLTSIQT---LLLSGNDELGGKI--PTSFGRFCK--LKSFSTGFTNLSQDIS 201
NI L+NL + +L DE +I P+ C + F +TN D S
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN---DFS 275
Query: 202 EILGIFSACVANELESLDLGSCQI--------------FGHMTNQLGRFKGLN--FLDLS 245
+ + F C+AN + ++ L I + QL +F L+ FL
Sbjct: 276 DDIVKFH-CLAN-VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL 333
Query: 246 NTTMD-GSIPLSLGQIANLEYLDLSKNEL 273
TM+ GSI + +L YLDLS+N L
Sbjct: 334 TLTMNKGSISFKKVALPSLSYLDLSRNAL 362
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 11/134 (8%)
Query: 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
S K + LSF L S +NFS L LDLS E + L L L L+ N
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGR 182
S PG S L LE L +L ++ S + L +++ L ++ N F
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAHN----------FIH 141
Query: 183 FCKLKSFSTGFTNL 196
CKL ++ + TNL
Sbjct: 142 SCKLPAYFSNLTNL 155
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 6 LGNLSNLQYLDLSG-----------------YNFKLHADTISWLSGLSLLKHLYISSVNL 48
L NL+NL L+LS NF + L+ L+ L+ L ISS
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS--- 181
Query: 49 SKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD-LSENEFQGQIPSRLG 107
+K SD + V+ L +L+ L + ++ PL LT LD LS N Q + L
Sbjct: 182 NKVSD-ISVLAKLTNLESLIATNNQISDITPLGI-----LTNLDELSLNGNQLKDIGTLA 235
Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQ 162
+LT+L LDL+ NQ +++ P LS L L L L +N++ NIS L GL LT+++
Sbjct: 236 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLE 288
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 48/229 (20%)
Query: 61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
L +L ++ S +L PL N + L + ++ N+ P L NLT+L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
Q + P L L +L L L SN + +IS+L LTS+Q L +F
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--------------NF 158
Query: 181 G-RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGL 239
G + LK + NL+ LE LD+ S ++ L + L
Sbjct: 159 GNQVTDLKPLA----NLT----------------TLERLDISSNKVSDISV--LAKLTNL 196
Query: 240 NFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
L +N + PL G + NL+ L L+ N+L + NLT L
Sbjct: 197 ESLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGTLASLTNLTDL 243
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 52/164 (31%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
LG L+NL L L+G K I L+ L+ L L +++ +S +L ++ L L
Sbjct: 212 LGILTNLDELSLNGNQLK----DIGTLASLTNLTDLDLANNQIS----NLAPLSGLTKLT 263
Query: 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP---------------------- 103
ELKL ++ + PL A ++LT L+L+EN+ + P
Sbjct: 264 ELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 321
Query: 104 --------------------SRLGNLTSLKYLDLSFNQFNSVVP 127
S L NLT++ +L NQ + + P
Sbjct: 322 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 365
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 131/329 (39%), Gaps = 75/329 (22%)
Query: 4 HQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASD-SLLVINSLP 62
+ N S LQ+LDLS + D +W GL L +L ++ + S S + SL
Sbjct: 45 YSFSNFSELQWLDLSRCEIETIEDK-AW-HGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 102
Query: 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQ 121
+L ++ L FP +L L+++ N ++P+ NLT+L ++DLS+N
Sbjct: 103 NLVAVETKLASLESFPI---GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 159
Query: 122 FNSVVPGWLSKLNDLEFLS------------------LQSNRLQG--------------- 148
++ +NDL+FL +Q QG
Sbjct: 160 IQTIT------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSS 213
Query: 149 NISSLGLENLTSIQT---LLLSGNDELGGKI--PTSFGRFCK--LKSFSTGFTNLSQDIS 201
NI L+NL + +L DE +I P+ C + F +TN D S
Sbjct: 214 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN---DFS 270
Query: 202 EILGIFSACVANELESLDLGSCQI--------------FGHMTNQLGRFKGLN--FLDLS 245
+ + F C+AN + ++ L I + QL +F L+ FL
Sbjct: 271 DDIVKFH-CLAN-VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL 328
Query: 246 NTTMD-GSIPLSLGQIANLEYLDLSKNEL 273
TM+ GSI + +L YLDLS+N L
Sbjct: 329 TLTMNKGSISFKKVALPSLSYLDLSRNAL 357
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 11/134 (8%)
Query: 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQF 122
S K + LSF L S +NFS L LDLS E + L L L L+ N
Sbjct: 28 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 87
Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGR 182
S PG S L LE L +L ++ S + L +++ L ++ N F
Sbjct: 88 QSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAHN----------FIH 136
Query: 183 FCKLKSFSTGFTNL 196
CKL ++ + TNL
Sbjct: 137 SCKLPAYFSNLTNL 150
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 6 LGNLSNLQYLDLSG-----------------YNFKLHADTISWLSGLSLLKHLYISSVNL 48
L NL+NL L+LS NF + L+ L+ L+ L ISS
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS--- 181
Query: 49 SKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD-LSENEFQGQIPSRLG 107
+K SD + V+ L +L+ L + ++ PL LT LD LS N Q + L
Sbjct: 182 NKVSD-ISVLAKLTNLESLIATNNQISDITPLGI-----LTNLDELSLNGNQLKDIGTLA 235
Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQ 162
+LT+L LDL+ NQ +++ P LS L L L L +N++ NIS L GL LT+++
Sbjct: 236 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLE 288
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 48/229 (20%)
Query: 61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
L +L ++ S +L PL N + L + ++ N+ P L NLT+L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
Q + P L L +L L L SN + +IS+L LTS+Q L +F
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--------------NF 158
Query: 181 G-RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGL 239
G + LK + NL+ LE LD+ S ++ L + L
Sbjct: 159 GNQVTDLKPLA----NLT----------------TLERLDISSNKVSDISV--LAKLTNL 196
Query: 240 NFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
L +N + PL G + NL+ L L+ N+L + NLT L
Sbjct: 197 ESLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGTLASLTNLTDL 243
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 52/164 (31%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
LG L+NL L L+G K I L+ L+ L L +++ +S +L ++ L L
Sbjct: 212 LGILTNLDELSLNGNQLK----DIGTLASLTNLTDLDLANNQIS----NLAPLSGLTKLT 263
Query: 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP---------------------- 103
ELKL ++ + PL A ++LT L+L+EN+ + P
Sbjct: 264 ELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 321
Query: 104 --------------------SRLGNLTSLKYLDLSFNQFNSVVP 127
S L NLT++ +L NQ + + P
Sbjct: 322 VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP 365
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 86 SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
SS T L+L N+ Q LT L L LS NQ S+ G KL L L L N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 146 LQGNISSLGLENLTSIQTLLLSGN 169
LQ ++ + + LT ++ L L N
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALDTN 110
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%)
Query: 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116
V + L L +L LS ++ P + LT L L EN+ Q LT LK L
Sbjct: 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106
Query: 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
L NQ SV G +L L+ + L +N
Sbjct: 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELK 68
L L++LD N K ++ +LS L L +L IS + A + + N L SL+ LK
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLK 156
Query: 69 LSFCKLHH-FPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP 127
++ F P +LT LDLS+ + + P+ +L+SL+ L++S N F S+
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 128 GWLSKLNDLEFLSLQSNR--------LQGNISSLGLENLT 159
LN L+ L N LQ SSL NLT
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 36/213 (16%)
Query: 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSEN--EFQGQIPSRLGNLTSLKYLDLSFN 120
S L+L KL P + LT L LS N F+G TSLKYLDLSFN
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
++ +L L LE L Q + L K + F
Sbjct: 89 GVITMSSNFLG-LEQLEHLDFQHSNL----------------------------KQMSEF 119
Query: 181 GRFCKLKSFSTGFTNLSQDISEIL--GIFSACVANELESLDLGSCQIFGHMTNQLGRFKG 238
F L++ + ++S + + GIF+ + E+ + S Q + + +
Sbjct: 120 SVFLSLRNLI--YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELRN 176
Query: 239 LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKN 271
L FLDLS ++ P + +++L+ L++S N
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 484 FNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILD 543
FN + LE L M N N + L L+L + P L+SLQ+L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 544 VAYNNLSG--TIP-RCINNFSAM 563
+++NN T P +C+N+ +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVL 228
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 67 LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVV 126
L+L ++ PL N + +T L+LS N + S + L S+K LDL+ Q V
Sbjct: 74 LELKDNQITDLTPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 129
Query: 127 PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIP-TSFGRFCK 185
P L+ L++L+ L L N++ NIS L LT++Q L + GN+++ P + +
Sbjct: 130 P--LAGLSNLQVLYLDLNQIT-NISPLA--GLTNLQYLSI-GNNQVNDLTPLANLSKLTT 183
Query: 186 LKSFSTGFTNLS 197
L++ +++S
Sbjct: 184 LRADDNKISDIS 195
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 84/193 (43%), Gaps = 56/193 (29%)
Query: 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLG-LENLTSIQTLLLSGNDELGGKI 176
+FN + + G + LN+L L L+ N+ I+ L L+NLT I L LSGN
Sbjct: 54 AFNTGVTTIEG-IQYLNNLIGLELKDNQ----ITDLTPLKNLTKITELELSGN------- 101
Query: 177 PTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRF 236
LK ++S I G+ S +++LDL S QI +
Sbjct: 102 --------PLK-----------NVSAIAGLQS------IKTLDLTSTQI-----TDVTPL 131
Query: 237 KGLN-----FLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTF 291
GL+ +LDL+ T L + NL+YL + N++N NL+KL T
Sbjct: 132 AGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNNQVNDLTP---LANLSKLTTL 184
Query: 292 RANGNSLIFKINP 304
RA+ N I I+P
Sbjct: 185 RADDNK-ISDISP 196
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%)
Query: 61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
LP L +L+L +L P + S + L L EN+ + L LK L+L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNI 150
Q + V+PG LN L L+L SN N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNC 142
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 67 LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVV 126
L+L ++ PL N + +T L+LS N + S + L S+K LDL+ Q V
Sbjct: 68 LELKDNQITDLAPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 123
Query: 127 PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIP-TSFGRFCK 185
P L+ L++L+ L L N++ NIS L LT++Q L + GN ++ P + +
Sbjct: 124 P--LAGLSNLQVLYLDLNQIT-NISPLA--GLTNLQYLSI-GNAQVSDLTPLANLSKLTT 177
Query: 186 LKSFSTGFTNLS 197
LK+ +++S
Sbjct: 178 LKADDNKISDIS 189
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%)
Query: 79 PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEF 138
P +N+ LT +DLS N N+T L L LS+N+ + P L L
Sbjct: 47 PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106
Query: 139 LSLQSN 144
LSL N
Sbjct: 107 LSLHGN 112
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 88 LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ 147
+T L L N+F +P L N L +DLS N+ +++ S + L L L NRL+
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 148 GNISSLGLENLTSIQTLLLSGNDELGGKIPT-SFGRFCKLKSFSTGFTNLSQDISEILGI 206
I + L S++ L L GND +P +F L + G L D + +
Sbjct: 92 C-IPPRTFDGLKSLRLLSLHGNDI--SVVPEGAFNDLSALSHLAIGANPLYCDCN--MQW 146
Query: 207 FSACVANELESLDLGSCQIFGHMTNQL 233
S V +E + + C G M ++L
Sbjct: 147 LSDWVKSEYKEPGIARCAGPGEMADKL 173
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 6 LGNLSNLQYLDLSG-----------------YNFKLHADTISWLSGLSLLKHLYISSVNL 48
L NL+NL L+LS +F + L+ L+ L+ L ISS
Sbjct: 129 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS--- 185
Query: 49 SKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD-LSENEFQGQIPSRLG 107
+K SD + V+ L +L+ L + ++ PL LT LD LS N Q + L
Sbjct: 186 NKVSD-ISVLAKLTNLESLIATNNQISDITPLGI-----LTNLDELSLNGNQLKDIGTLA 239
Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQ 162
+LT+L LDL+ NQ +++ P LS L L L L +N++ NIS L GL LT+++
Sbjct: 240 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLE 292
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 94/229 (41%), Gaps = 48/229 (20%)
Query: 61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
L +L ++ S +L PL N + L + ++ N+ P L NLT+L L L N
Sbjct: 66 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
Q + P L L +L L L SN + +IS+L LTS+Q L SF
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--------------SF 162
Query: 181 G-RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGL 239
G + LK + NL+ LE LD+ S ++ L + L
Sbjct: 163 GNQVTDLKPLA----NLT----------------TLERLDISSNKVSDISV--LAKLTNL 200
Query: 240 NFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
L +N + PL G + NL+ L L+ N+L + NLT L
Sbjct: 201 ESLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGTLASLTNLTDL 247
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 52/164 (31%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
LG L+NL L L+G K I L+ L+ L L +++ +S +L ++ L L
Sbjct: 216 LGILTNLDELSLNGNQLK----DIGTLASLTNLTDLDLANNQIS----NLAPLSGLTKLT 267
Query: 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP---------------------- 103
ELKL ++ + PL A ++LT L+L+EN+ + P
Sbjct: 268 ELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 325
Query: 104 --------------------SRLGNLTSLKYLDLSFNQFNSVVP 127
S L NLT++ +L NQ + + P
Sbjct: 326 VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP 369
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
L NL+NL L+LS IS LSGL+ L+ L + + +D L + +L +L+
Sbjct: 130 LKNLTNLNRLELSSNTIS----DISALSGLTSLQQLSFGN----QVTD-LKPLANLTTLE 180
Query: 66 ELKLS---------FCKLHHFPPLSSAN--------FSSLTTLD-LSENEFQGQIPSRLG 107
L +S KL + L + N LT LD LS N Q + L
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 240
Query: 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL-GLENLTSIQ 162
+LT+L LDL+ NQ +++ P LS L L L L +N++ NIS L GL LT+++
Sbjct: 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLE 293
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 94/229 (41%), Gaps = 48/229 (20%)
Query: 61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFN 120
L +L ++ S +L PL N + L + ++ N+ P L NLT+L L L N
Sbjct: 67 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 121 QFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSF 180
Q + P L L +L L L SN + +IS+L LTS+Q L SF
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--------------SF 163
Query: 181 G-RFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGL 239
G + LK + NL+ LE LD+ S ++ L + L
Sbjct: 164 GNQVTDLKPLA----NLT----------------TLERLDISSNKVSDISV--LAKLTNL 201
Query: 240 NFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288
L +N + PL G + NL+ L L+ N+L + NLT L
Sbjct: 202 ESLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGTLASLTNLTDL 248
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 52/164 (31%)
Query: 6 LGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
LG L+NL L L+G K I L+ L+ L L +++ +S +L ++ L L
Sbjct: 217 LGILTNLDELSLNGNQLK----DIGTLASLTNLTDLDLANNQIS----NLAPLSGLTKLT 268
Query: 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP---------------------- 103
ELKL ++ + PL A ++LT L+L+EN+ + P
Sbjct: 269 ELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 326
Query: 104 --------------------SRLGNLTSLKYLDLSFNQFNSVVP 127
S L NLT++ +L NQ + + P
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 43 ISSVNLSKASDSLL---VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQ 99
+ + +LSK+ L V + L++L L+ +++ + + L L+LS+N F
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FL 335
Query: 100 GQIPSRL-GNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL 158
G I SR+ NL L+ LDLS+N ++ L +L+ L+L +N+L+ + + L
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI-FDRL 394
Query: 159 TSIQTLLLSGN 169
TS+Q + L N
Sbjct: 395 TSLQKIWLHTN 405
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 125/323 (38%), Gaps = 73/323 (22%)
Query: 9 LSNLQYLDLSGYN--FKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKE 66
L +LQ+L + + +T LS L +LK Y + L + N L +L+
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA-----FNGLANLEV 107
Query: 67 LKLSFCKL-------HHFPPLSSANFSSLTTLDLSENEFQGQIPSRLG-NLTSLKYLDLS 118
L L+ C L + F PL+S L L L +N + P+ N+ LDL+
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTS-----LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 119 FNQFNSVVPGWLSKLNDLEF--LSLQSNRLQG-NISSLGLENL------TSIQTLLLSGN 169
FN+ S+ L F L L S LQ N LG E TSI TL LSGN
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222
Query: 170 DELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESL------DLGSC 223
G + RF F A +++SL ++GS
Sbjct: 223 ----GFKESMAKRF-----------------------FDAIAGTKIQSLILSNSYNMGSS 255
Query: 224 QIFGHMTNQLG---RFKGLNF-----LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG 275
FGH + FKGL DLS + + + +LE L L++NE+N
Sbjct: 256 --FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN- 312
Query: 276 TVSEIHFVNLTKLVTFRANGNSL 298
+ + F LT L+ + N L
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFL 335
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 478 GIIPTSFNNFTILEALDMGENEL--VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535
++ + F++FT LE L + +NE+ + + W + L+ LNL N F G ++
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW---GLTHLLKLNLSQN-FLGSIDSRMFE 344
Query: 536 -LASLQILDVAYNNLSG 551
L L++LD++YN++
Sbjct: 345 NLDKLEVLDLSYNHIRA 361
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 57 VINSLP-SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
+ ++LP S K L LSF L H S +F L LDLS E Q +L+ L L
Sbjct: 24 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 83
Query: 116 DLSFNQFNSVVPGWLSKLNDLE-FLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG 174
L+ N S+ G S L+ L+ ++L++N ++ + + +L +++ L ++ N
Sbjct: 84 ILTGNPIQSLALGAFSGLSSLQKLVALETNL--ASLENFPIGHLKTLKELNVAHNLIQSF 141
Query: 175 KIPTSFGRFCKLK 187
K+P F L+
Sbjct: 142 KLPEYFSNLTNLE 154
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 12 LQYLDLSGYNFKLHAD----TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
LQ LDLS + D ++S LS L L + I S+ L S ++SL L L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG----LSSLQKLVAL 110
Query: 68 KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQFNSV 125
+ + L +FP + +L L+++ N Q ++P NLT+L++LDLS N+ S+
Sbjct: 111 ETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 8 NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
+LS+L L L+G + + + SGLS L+ L NL+ + I L +LKEL
Sbjct: 76 SLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVALETNLASLEN--FPIGHLKTLKEL 131
Query: 68 KLSFCKLHHFP-PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ----F 122
++ + F P +N ++L LDLS N+ Q + L L + L+LS +
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 191
Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
N + PG ++ L+ L+L +N+L+ + + LTS+Q + L N
Sbjct: 192 NFIQPGAFKEIR-LKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTN 236
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 34/167 (20%)
Query: 111 SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
S K LDLSFN + +L+ L L +Q I ++L+ + TL+L+GN
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN- 88
Query: 171 ELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHM 229
++S + G F+ LS VA E +L S + F
Sbjct: 89 --------------PIQSLALGAFSGLSS--------LQKLVALET---NLASLENFP-- 121
Query: 230 TNQLGRFKGLNFLDLSNTTMDG-SIPLSLGQIANLEYLDLSKNELNG 275
+G K L L++++ + +P + NLE+LDLS N++
Sbjct: 122 ---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 57 VINSLP-SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
+ ++LP S K L LSF L H S +F L LDLS E Q +L+ L L
Sbjct: 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK 175
L+ N S+ G S L+ L+ L L ++ + + +L +++ L ++ N K
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 176 IPTSFGRFCKLK 187
+P F L+
Sbjct: 141 LPEYFSNLTNLE 152
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 12 LQYLDLSGYNFKLHAD----TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
LQ LDLS + D ++S LS L L + I S+ L S ++SL L +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG----LSSLQKLVAV 108
Query: 68 KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQFNSV 125
+ + L +FP + +L L+++ N Q ++P NLT+L++LDLS N+ S+
Sbjct: 109 ETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 8 NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
+LS+L L L+G + + + SGLS L+ L NL+ + I L +LKEL
Sbjct: 74 SLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKEL 129
Query: 68 KLSFCKLHHFP-PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ----F 122
++ + F P +N ++L LDLS N+ Q + L L + L+LS +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
N + PG ++ L+ L+L +N+L+ + + LTS+Q + L N
Sbjct: 190 NFIQPGAFKEIR-LKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTN 234
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 34/167 (20%)
Query: 111 SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
S K LDLSFN + +L+ L L +Q I ++L+ + TL+L+GN
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN- 86
Query: 171 ELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHM 229
++S + G F+ LS VA E +L S + F
Sbjct: 87 --------------PIQSLALGAFSGLSS--------LQKLVAVET---NLASLENFP-- 119
Query: 230 TNQLGRFKGLNFLDLSNTTMDG-SIPLSLGQIANLEYLDLSKNELNG 275
+G K L L++++ + +P + NLE+LDLS N++
Sbjct: 120 ---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 57 VINSLP-SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
+ ++LP S K L LSF L H S +F L LDLS E Q +L+ L L
Sbjct: 23 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 82
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK 175
L+ N S+ G S L+ L+ L L ++ + + +L +++ L ++ N K
Sbjct: 83 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK 141
Query: 176 IPTSFGRFCKLK 187
+P F L+
Sbjct: 142 LPEYFSNLTNLE 153
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 12 LQYLDLSGYNFKLHAD----TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
LQ LDLS + D ++S LS L +L I S+ L S ++SL L +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTL-ILTGNPIQSLALGAFSG----LSSLQKLVAV 109
Query: 68 KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQFNSV 125
+ + L +FP + +L L+++ N Q ++P NLT+L++LDLS N+ S+
Sbjct: 110 ETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 8 NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
+LS+L L L+G + + + SGLS L+ L NL AS I L +LKEL
Sbjct: 75 SLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKEL 130
Query: 68 KLSFCKLHHFP-PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ----F 122
++ + F P +N ++L LDLS N+ Q + L L + L+LS +
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 190
Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
N + PG ++ L+ L+L +N+L+ + + LTS+Q + L N
Sbjct: 191 NFIQPGAFKEIR-LKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTN 235
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 34/167 (20%)
Query: 111 SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
S K LDLSFN + +L+ L L +Q I ++L+ + TL+L+GN
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN- 87
Query: 171 ELGGKIPTSFGRFCKLKSFSTG-FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHM 229
++S + G F+ LS VA E +L S + F
Sbjct: 88 --------------PIQSLALGAFSGLSS--------LQKLVAVET---NLASLENFP-- 120
Query: 230 TNQLGRFKGLNFLDLSNTTMDG-SIPLSLGQIANLEYLDLSKNELNG 275
+G K L L++++ + +P + NLE+LDLS N++
Sbjct: 121 ---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 91 LDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQ 147
L L N+ P +LT L YL+L+ NQ ++ G KL L L+L N+L+
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK 101
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 10/192 (5%)
Query: 24 LHADTISWLSGLSL-----LKHLYISSVNLSKASDSLLVINSLPSLKELKLSF-CKLHHF 77
LH + IS + S L L++ S L++ + L L++L LS +L
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSDNAQLRSV 95
Query: 78 PPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLE 137
P + L TL L Q P L +L+YL L N ++ L +L
Sbjct: 96 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 155
Query: 138 FLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLS 197
L L NR+ ++ L S+ LLL N + P +F +L + NLS
Sbjct: 156 HLFLHGNRI-SSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 198 QDISEILGIFSA 209
+E L A
Sbjct: 214 ALPTEALAPLRA 225
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 10/192 (5%)
Query: 24 LHADTISWLSGLSL-----LKHLYISSVNLSKASDSLLVINSLPSLKELKLSF-CKLHHF 77
LH + IS + S L L++ S L++ + L L++L LS +L
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSDNAQLRSV 96
Query: 78 PPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLE 137
P + L TL L Q P L +L+YL L N ++ L +L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 138 FLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLS 197
L L NR+ ++ L S+ LLL N + P +F +L + NLS
Sbjct: 157 HLFLHGNRI-SSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 198 QDISEILGIFSA 209
+E L A
Sbjct: 215 ALPTEALAPLRA 226
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 10/187 (5%)
Query: 24 LHADTISWLSGLSL-----LKHLYISSVNLSKASDSLLVINSLPSLKELKLSF-CKLHHF 77
LH + IS++ S L L++ S L+ + L L++L LS +L
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAA--AFTGLTLLEQLDLSDNAQLRVV 95
Query: 78 PPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLE 137
P + L TL L Q P L +L+YL L N ++ L +L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 138 FLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLS 197
L L NR+ ++ L S+ LLL N + P +F +L + NLS
Sbjct: 156 HLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQN-HVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 198 QDISEIL 204
+E+L
Sbjct: 214 MLPAEVL 220
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 12 LQYLDLSGYNFKLHAD----TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
LQ LDLS + D ++S LS L L + I S+ L S ++SL L +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG----LSSLQKLVAV 110
Query: 68 KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQFNSV 125
+ + L +FP + +L L+++ N Q ++P NLT+L++LDLS N+ S+
Sbjct: 111 ETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 57 VINSLP-SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
+ ++LP S K L LS+ L H S +F L LDLS E Q +L+ L L
Sbjct: 24 IPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 83
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK 175
L+ N S+ G S L+ L+ L L ++ + + +L +++ L ++ N K
Sbjct: 84 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK 142
Query: 176 IPTSFGRFCKLK 187
+P F L+
Sbjct: 143 LPEYFSNLTNLE 154
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 8 NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
+LS+L L L+G + + + SGLS L+ L NL AS I L +LKEL
Sbjct: 76 SLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKEL 131
Query: 68 KLSFCKLHHFP-PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ----F 122
++ + F P +N ++L LDLS N+ Q + L L + L+LS +
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 191
Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
N + PG ++ L+ L+L +N+L+ + + LTS+Q + L N
Sbjct: 192 NFIQPGAFKEIR-LKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTN 236
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 124/323 (38%), Gaps = 73/323 (22%)
Query: 9 LSNLQYLDLSGYN--FKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKE 66
L +LQ+L + + +T LS L +LK Y + L + N L +L+
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA-----FNGLANLEV 107
Query: 67 LKLSFCKL-------HHFPPLSSANFSSLTTLDLSENEFQGQIPSRLG-NLTSLKYLDLS 118
L L+ C L + F PL+S L L L +N + P+ N+ LDL+
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTS-----LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 119 FNQFNSVVPGWLSKLNDLEF--LSLQSNRLQG-NISSLGLENL------TSIQTLLLSGN 169
FN+ S+ L F L L S LQ N LG E TSI TL LSGN
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222
Query: 170 DELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESL------DLGSC 223
G + RF F A +++SL ++GS
Sbjct: 223 ----GFKESMAKRF-----------------------FDAIAGTKIQSLILSNSYNMGSS 255
Query: 224 QIFGHMTNQLG---RFKGLNF-----LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG 275
FGH + FKGL DLS + + + +LE L L++NE+N
Sbjct: 256 --FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN- 312
Query: 276 TVSEIHFVNLTKLVTFRANGNSL 298
+ + F LT L + N L
Sbjct: 313 KIDDNAFWGLTHLKELALDTNQL 335
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 83 ANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQ 142
++F+ L L L++NE + LT LK L L NQ SV G +L L+ + L
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 355
Query: 143 SN 144
+N
Sbjct: 356 TN 357
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 12 LQYLDLSGYNFKLHAD----TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
LQ LDLS + D ++S LS L +L I S+ L S ++SL L +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTL-ILTGNPIQSLALGAFSG----LSSLQKLVAV 109
Query: 68 KLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLKYLDLSFNQFNSV 125
+ + L +FP + +L L+++ N Q ++P NLT+L++LDLS N+ S+
Sbjct: 110 ETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 57 VINSLP-SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115
+ ++LP S K L LS+ L H S +F L LDLS E Q +L+ L L
Sbjct: 23 IPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 82
Query: 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK 175
L+ N S+ G S L+ L+ L L ++ + + +L +++ L ++ N K
Sbjct: 83 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK 141
Query: 176 IPTSFGRFCKLK 187
+P F L+
Sbjct: 142 LPEYFSNLTNLE 153
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 8 NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKEL 67
+LS+L L L+G + + + SGLS L+ L NL+ + I L +LKEL
Sbjct: 75 SLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKEL 130
Query: 68 KLSFCKLHHFP-PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQ----F 122
++ + F P +N ++L LDLS N+ Q + L L + L+LS +
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 190
Query: 123 NSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169
N + PG ++ L+ L+L +N+L+ + + LTS+Q + L N
Sbjct: 191 NFIQPGAFKEIR-LKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTN 235
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 29/192 (15%)
Query: 79 PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEF 138
P + F+ L TL L+ N + +P+ + +L L+ L + + +P L+ +
Sbjct: 120 PDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTD---- 174
Query: 139 LSLQSNRLQG--NISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNL 196
S QG N+ SL LE T I++L P S LKS + L
Sbjct: 175 ---ASGEHQGLVNLQSLRLE-WTGIRSL------------PASIANLQNLKSLKIRNSPL 218
Query: 197 SQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLS 256
S I + +LE LDL C + G L L L + + ++PL
Sbjct: 219 SALGPAIHHL------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 257 LGQIANLEYLDL 268
+ ++ LE LDL
Sbjct: 273 IHRLTQLEKLDL 284
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 91 LDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNI 150
L L +N+ P LT L LDL NQ + G KL L LSL N+L+ +I
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 101
Query: 151 SSLGLENLTSIQTLLLSGN 169
+NL S+ + L N
Sbjct: 102 PRGAFDNLKSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 91 LDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNI 150
L L +N+ P LT L LDL NQ + G KL L LSL N+L+ +I
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 93
Query: 151 SSLGLENLTSIQTLLLSGN 169
+NL S+ + L N
Sbjct: 94 PRGAFDNLKSLTHIWLLNN 112
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 58 INSLPS-----LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL 112
+NS+PS +K L LS ++ + +L L L+ N +L SL
Sbjct: 43 LNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
++LDLS+N +++ W L+ L FL+L N + + +LT +Q L + D
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 91 LDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNI 150
L L +N P LT L LDL NQ + G KL L LSL N+L+ +I
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 93
Query: 151 SSLGLENLTSIQTLLLSGN 169
+NL S+ + L N
Sbjct: 94 PRGAFDNLRSLTHIWLLNN 112
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 81 SSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLS 140
S +++LT LDLS N L SL+YL L +N + P L++L +LS
Sbjct: 243 SGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLS 302
Query: 141 LQ 142
L+
Sbjct: 303 LK 304
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 513 SRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRC--------INNFSAMA 564
S + +LNL N+ P R + L ILD +N++S P + N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 565 TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSG 619
+ SDQ+ +F +L + ++ +++ +K +K+ NL++ +D+S N S
Sbjct: 85 LSQISDQT-FVFCTNLTELDLMSNSIHKIKS--NPFKNQKNLIK-LDLSHNGLSS 135
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 58 INSLPS-----LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL 112
+NS+PS +K L LS ++ + +L L L+ N +L SL
Sbjct: 17 LNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170
++LDLS+N +++ W L+ L FL+L N + + +LT +Q L + D
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 134
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 34/139 (24%)
Query: 8 NLSNLQYLDLSGYNFKLHA--DTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLK 65
N+S+L+ LD+S + HA T +W ++S+LV+N L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAW--------------------AESILVLN----LS 436
Query: 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV 125
L+ PP + LDL N IP + +L +L+ L+++ NQ SV
Sbjct: 437 SNMLTGSVFRCLPP-------KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSV 488
Query: 126 VPGWLSKLNDLEFLSLQSN 144
G +L L+++ L N
Sbjct: 489 PDGVFDRLTSLQYIWLHDN 507
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 607 VRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDF 660
V+ +D+ NN +P +VT+LQ LQ LN + N +PD GV + SL +
Sbjct: 452 VKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS-VPD--GVFDRLTSLQY 501
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 615 NNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI-GVMRSIESLDFSANQLSGYIP 670
N G++P + ++ L SLN +YN T IP N G +E+L F+ N+L YIP
Sbjct: 340 NQLEGKLPAFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP 393
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 88 LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144
+ LDL N+ + IP ++ L +L+ L+++ NQ SV G +L L+ + L +N
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 88 LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQSNRL 146
L LDLS N+ + +LK+LDLSFN F+++ + ++ L+FL L + L
Sbjct: 71 LEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 147 QGNISSLGLENLTSIQTLLLSG 168
+ + S L + +L + LL+ G
Sbjct: 128 EKS-SVLPIAHLNISKVLLVLG 148
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 86 SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
+++T L+L+ N+ + + + L LD+ FN + + P KL L+ L+LQ N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 146 L 146
L
Sbjct: 85 L 85
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 86 SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
+++T L+L+ N+ + + + L LD+ FN + + P KL L+ L+LQ N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 146 L 146
L
Sbjct: 95 L 95
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 160 SIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLD 219
S QTL+++ N +LG + G F + + S G + + + G + + D
Sbjct: 379 SQQTLVVALNSDLGNPGQVASGSFSEAVNASNGQVRVWRSGTGSGGGEPGALVSVSFRCD 438
Query: 220 LGSCQIFGHM-----TNQLGRFKGLNFLDLSNT----TMDGSIPLSLGQIANLEYLDLSK 270
G+ Q+ + +QLG + L L++T T GSI L GQ N E+ L +
Sbjct: 439 NGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPAGQ--NEEWKCLIR 496
Query: 271 NELNGT 276
NE N T
Sbjct: 497 NEANAT 502
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 86 SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR 145
+++T L+L+ N+ + + + L LD+ FN + + P KL L+ L+LQ N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 146 L 146
L
Sbjct: 90 L 90
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 25/131 (19%)
Query: 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL----- 117
++ E++L + PP + + + L +DLS N+ P L SL L L
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 118 -------------------SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL 158
+ N+ N + L++L LSL N+LQ I+ L
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPL 151
Query: 159 TSIQTLLLSGN 169
+IQT+ L+ N
Sbjct: 152 RAIQTMHLAQN 162
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 87 SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
SLT L L N+ + L L +L L LSFN ++V G L+ L L L +N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 147 QGNISSLGLENLTSIQTLLLSGND 170
GL + IQ + L N+
Sbjct: 253 VK--VPGGLADHKYIQVVYLHNNN 274
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 87 SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146
SLT L L N+ + L L +L L LSFN ++V G L+ L L L +N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 147 QGNISSLGLENLTSIQTLLLSGND 170
GL + IQ + L N+
Sbjct: 253 VK--VPGGLADHKYIQVVYLHNNN 274
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 25/131 (19%)
Query: 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL----- 117
++ E++L + PP + + + L +DLS N+ P L SL L L
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 118 -------------------SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL 158
+ N+ N + L++L LSL N+LQ I+ L
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPL 151
Query: 159 TSIQTLLLSGN 169
+IQT+ L+ N
Sbjct: 152 RAIQTMHLAQN 162
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 26/123 (21%)
Query: 72 CKLHHFPPLSSANFSSLTTLDLSENEFQ----GQIPSRLGNLTSL--------------- 112
C P + + S LDLS N P+RL NL SL
Sbjct: 25 CSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84
Query: 113 ------KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLL 166
+YLDLS N +++ S L LE L L +N + + E++ +Q L L
Sbjct: 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYL 143
Query: 167 SGN 169
S N
Sbjct: 144 SQN 146
>pdb|3PVC|A Chain A, Crystal Structure Of Apo Mnmc From Yersinia Pestis
pdb|3SGL|A Chain A, The Crystal Structure Of Mnmc From Yersinia Pestis Bound
With Fad And Sam
Length = 689
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 251 GSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPF 310
G++P +A +Y DLS+ +G SE++ + + P W F
Sbjct: 582 GAVPDYAATLA--QYQDLSRRIQHGGESEVNDI-----------------AVAPVWPELF 622
Query: 311 QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFW 355
+ GLG R P L +Q L + + ++A P RFW
Sbjct: 623 XVGGLGSRGLCSAPLVAEILAAQXFGEPLPLDAKTLAALNPNRFW 667
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,795,222
Number of Sequences: 62578
Number of extensions: 850923
Number of successful extensions: 2328
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1579
Number of HSP's gapped (non-prelim): 400
length of query: 793
length of database: 14,973,337
effective HSP length: 107
effective length of query: 686
effective length of database: 8,277,491
effective search space: 5678358826
effective search space used: 5678358826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)