Query 003813
Match_columns 793
No_of_seqs 729 out of 4406
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 12:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6E-66 1.3E-70 621.7 41.4 541 62-716 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-60 3.6E-65 574.5 37.7 539 35-690 68-607 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.3E-39 2.9E-44 329.8 9.7 410 88-704 54-466 (873)
4 KOG4194 Membrane glycoprotein 100.0 8.2E-40 1.8E-44 331.3 7.5 390 64-546 54-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 9.4E-42 2E-46 330.8 -17.8 265 63-347 46-310 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 6.3E-42 1.4E-46 332.0 -22.5 491 12-666 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 6.8E-38 1.5E-42 334.6 -5.2 483 15-688 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.5E-36 5.5E-41 322.7 -4.7 495 2-687 13-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.5E-33 9.8E-38 284.3 -2.6 385 158-685 6-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.9E-33 6.4E-38 285.6 -4.1 374 83-530 4-379 (1255)
11 KOG4237 Extracellular matrix p 99.9 3.8E-27 8.3E-32 229.3 -2.6 225 412-687 270-498 (498)
12 KOG4237 Extracellular matrix p 99.9 1.1E-26 2.5E-31 226.1 0.0 258 63-323 68-359 (498)
13 PLN03210 Resistant to P. syrin 99.9 2.9E-22 6.3E-27 241.8 25.0 340 79-475 551-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 5.7E-22 1.2E-26 239.3 26.4 338 231-664 552-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1.6E-21 3.5E-26 217.4 16.3 261 337-696 204-464 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2.8E-21 6E-26 215.6 16.1 185 417-675 283-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.9E-19 6.3E-24 201.1 12.3 205 416-690 220-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 5.3E-19 1.2E-23 199.0 11.8 14 629-642 415-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2E-19 4.4E-24 189.3 0.9 215 435-689 76-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.9E-18 6.2E-23 180.5 3.4 156 14-170 2-176 (319)
21 KOG0617 Ras suppressor protein 99.7 3.2E-19 7E-24 154.1 -3.8 181 463-694 32-216 (264)
22 KOG0617 Ras suppressor protein 99.7 5.7E-19 1.2E-23 152.6 -3.5 184 415-673 32-219 (264)
23 PLN03150 hypothetical protein; 99.6 5.2E-15 1.1E-19 166.7 11.9 116 606-721 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 1.5E-14 3.2E-19 148.7 -3.6 196 438-688 73-271 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 1.2E-14 2.5E-19 149.4 -6.0 195 415-664 74-271 (722)
26 COG4886 Leucine-rich repeat (L 99.3 4.1E-12 8.9E-17 137.5 7.2 123 420-548 97-220 (394)
27 COG4886 Leucine-rich repeat (L 99.3 5.4E-12 1.2E-16 136.6 7.5 199 443-695 96-295 (394)
28 PLN03150 hypothetical protein; 99.2 1.1E-11 2.5E-16 139.8 7.8 114 538-695 419-533 (623)
29 PF14580 LRR_9: Leucine-rich r 99.2 8.3E-12 1.8E-16 114.6 4.8 130 32-168 15-149 (175)
30 KOG1909 Ran GTPase-activating 99.2 2E-12 4.3E-17 125.8 -2.0 142 388-549 157-310 (382)
31 KOG3207 Beta-tubulin folding c 99.2 6.1E-12 1.3E-16 125.8 0.5 219 7-251 118-340 (505)
32 PF14580 LRR_9: Leucine-rich r 99.2 2E-11 4.3E-16 112.1 3.8 109 58-170 15-124 (175)
33 KOG1259 Nischarin, modulator o 99.1 1.8E-11 3.9E-16 116.2 1.6 131 514-694 285-416 (490)
34 KOG3207 Beta-tubulin folding c 99.1 1.8E-11 3.8E-16 122.6 -0.6 211 60-300 119-340 (505)
35 KOG1259 Nischarin, modulator o 99.1 1.8E-11 3.8E-16 116.2 -0.7 181 33-229 211-415 (490)
36 KOG1909 Ran GTPase-activating 99.0 8.3E-11 1.8E-15 114.7 1.9 241 32-298 26-310 (382)
37 KOG4658 Apoptotic ATPase [Sign 98.9 6.7E-10 1.5E-14 128.0 4.7 154 33-192 520-676 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 7.8E-10 1.7E-14 83.3 3.1 59 630-688 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 81.6 4.3 61 605-665 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.9 2.5E-10 5.4E-15 123.6 -1.3 128 33-170 69-197 (414)
41 KOG0531 Protein phosphatase 1, 98.8 2.9E-10 6.4E-15 123.0 -2.0 85 607-694 234-322 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.8 8.4E-09 1.8E-13 119.1 7.7 270 9-296 522-804 (889)
43 KOG2982 Uncharacterized conser 98.6 2.8E-08 6E-13 94.9 2.6 114 9-122 44-158 (418)
44 KOG1859 Leucine-rich repeat pr 98.5 3E-09 6.4E-14 113.2 -5.7 180 457-692 102-294 (1096)
45 KOG1859 Leucine-rich repeat pr 98.5 1.5E-09 3.3E-14 115.3 -9.0 99 64-169 166-264 (1096)
46 KOG4579 Leucine-rich repeat (L 98.5 8.9E-09 1.9E-13 86.7 -3.1 116 35-153 26-141 (177)
47 KOG2120 SCF ubiquitin ligase, 98.4 4.4E-09 9.6E-14 100.2 -6.0 180 111-296 186-373 (419)
48 KOG4579 Leucine-rich repeat (L 98.4 7.7E-09 1.7E-13 87.0 -4.2 86 608-696 80-165 (177)
49 COG5238 RNA1 Ran GTPase-activa 98.3 3E-08 6.5E-13 93.4 -4.2 34 213-246 30-67 (388)
50 KOG2982 Uncharacterized conser 98.2 2.6E-07 5.7E-12 88.4 0.7 190 85-301 70-264 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.2 4.9E-07 1.1E-11 85.4 1.1 90 33-122 27-132 (388)
52 KOG2120 SCF ubiquitin ligase, 98.1 8.7E-08 1.9E-12 91.6 -4.6 158 213-370 185-349 (419)
53 KOG1644 U2-associated snRNP A' 98.0 8.4E-06 1.8E-10 74.1 6.2 126 12-144 21-150 (233)
54 PF12799 LRR_4: Leucine Rich r 98.0 4E-06 8.8E-11 57.4 2.6 36 630-666 2-37 (44)
55 PRK15386 type III secretion pr 97.9 1.8E-05 3.9E-10 82.1 7.1 76 460-549 48-124 (426)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 55.3 3.1 37 653-690 1-37 (44)
57 KOG1644 U2-associated snRNP A' 97.9 2.7E-05 5.8E-10 70.9 6.2 82 87-170 43-124 (233)
58 KOG3665 ZYG-1-like serine/thre 97.9 5.6E-06 1.2E-10 93.5 2.3 84 35-121 147-231 (699)
59 KOG4341 F-box protein containi 97.8 1.3E-06 2.9E-11 87.8 -3.5 86 36-121 138-227 (483)
60 PF13306 LRR_5: Leucine rich r 97.8 4.3E-05 9.3E-10 67.9 6.3 97 59-161 32-128 (129)
61 PF13306 LRR_5: Leucine rich r 97.8 6E-05 1.3E-09 67.0 7.2 124 4-137 6-129 (129)
62 PRK15386 type III secretion pr 97.6 0.00013 2.8E-09 75.9 7.4 91 436-546 48-141 (426)
63 KOG4341 F-box protein containi 97.5 6.9E-06 1.5E-10 82.8 -4.0 279 11-295 139-435 (483)
64 KOG3665 ZYG-1-like serine/thre 97.4 9.6E-05 2.1E-09 83.8 4.0 142 62-205 122-271 (699)
65 KOG2739 Leucine-rich acidic nu 97.3 0.00014 3.1E-09 69.4 2.6 109 32-144 39-153 (260)
66 KOG2123 Uncharacterized conser 97.2 1.1E-05 2.5E-10 76.7 -5.7 101 34-140 17-123 (388)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00029 6.3E-09 67.4 2.2 107 60-168 41-152 (260)
68 KOG2123 Uncharacterized conser 96.3 0.00019 4.2E-09 68.6 -5.0 100 85-190 18-123 (388)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.003 6.4E-08 35.8 0.6 12 631-642 2-13 (22)
70 KOG1947 Leucine rich repeat pr 95.8 0.0015 3.3E-08 73.1 -1.4 111 60-170 186-306 (482)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.004 8.7E-08 35.3 0.4 21 654-675 1-21 (22)
72 KOG1947 Leucine rich repeat pr 95.5 0.0042 9.2E-08 69.4 0.5 136 33-169 185-331 (482)
73 KOG0473 Leucine-rich repeat pr 94.2 0.0023 5E-08 59.8 -4.8 84 604-690 41-124 (326)
74 KOG4308 LRR-containing protein 93.8 0.00063 1.4E-08 73.8 -11.0 135 416-550 144-303 (478)
75 KOG4308 LRR-containing protein 93.7 0.0006 1.3E-08 74.0 -11.5 191 312-527 89-304 (478)
76 PF13504 LRR_7: Leucine rich r 92.8 0.059 1.3E-06 28.2 1.1 12 631-642 3-14 (17)
77 PF13504 LRR_7: Leucine rich r 92.3 0.091 2E-06 27.5 1.4 11 64-74 3-13 (17)
78 KOG0473 Leucine-rich repeat pr 91.1 0.005 1.1E-07 57.6 -7.1 87 58-147 38-124 (326)
79 smart00370 LRR Leucine-rich re 90.9 0.18 3.9E-06 29.8 1.8 20 62-81 2-21 (26)
80 smart00369 LRR_TYP Leucine-ric 90.9 0.18 3.9E-06 29.8 1.8 20 62-81 2-21 (26)
81 smart00369 LRR_TYP Leucine-ric 90.4 0.24 5.3E-06 29.3 2.1 15 653-667 2-16 (26)
82 smart00370 LRR Leucine-rich re 90.4 0.24 5.3E-06 29.3 2.1 15 653-667 2-16 (26)
83 KOG3864 Uncharacterized conser 86.3 0.12 2.7E-06 47.8 -1.5 36 134-170 101-136 (221)
84 KOG3864 Uncharacterized conser 82.7 0.2 4.2E-06 46.5 -1.9 33 159-191 151-183 (221)
85 PF13516 LRR_6: Leucine Rich r 81.0 0.93 2E-05 26.1 1.2 13 489-501 3-15 (24)
86 smart00365 LRR_SD22 Leucine-ri 74.5 2.8 6E-05 24.8 1.9 15 652-666 1-15 (26)
87 smart00364 LRR_BAC Leucine-ric 74.2 2.1 4.5E-05 25.2 1.3 17 630-647 3-19 (26)
88 TIGR00864 PCC polycystin catio 74.1 1.6 3.4E-05 56.4 1.5 44 659-702 1-44 (2740)
89 KOG4242 Predicted myosin-I-bin 69.6 13 0.00028 39.6 6.6 60 417-476 215-280 (553)
90 PF15102 TMEM154: TMEM154 prot 63.2 9.7 0.00021 33.5 3.6 23 753-775 66-88 (146)
91 smart00368 LRR_RI Leucine rich 61.9 6.8 0.00015 23.6 1.8 13 654-666 3-15 (28)
92 KOG3763 mRNA export factor TAP 58.6 5.7 0.00012 43.0 1.8 64 59-124 215-284 (585)
93 KOG4242 Predicted myosin-I-bin 47.5 60 0.0013 34.8 7.0 85 465-549 355-452 (553)
94 PF08693 SKG6: Transmembrane a 47.1 24 0.00053 23.3 2.6 14 747-760 13-26 (40)
95 KOG3763 mRNA export factor TAP 43.1 13 0.00027 40.5 1.4 69 33-101 215-285 (585)
96 smart00367 LRR_CC Leucine-rich 32.2 33 0.00071 20.0 1.5 12 159-170 2-13 (26)
97 PF01102 Glycophorin_A: Glycop 30.0 9 0.0002 32.8 -1.7 20 749-768 67-86 (122)
98 TIGR00864 PCC polycystin catio 21.9 50 0.0011 43.7 1.9 32 611-642 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6e-66 Score=621.75 Aligned_cols=541 Identities=32% Similarity=0.519 Sum_probs=392.0
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCccccccc-CCCCCCEEeCcCCcCccCCcccccCCCCCCEEE
Q 003813 62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLG-NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLS 140 (793)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 140 (793)
.+++.|++++|.+++..+..|..+++|++|+|++|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 3566666666666655555566666666666666666655554433 566666666666666555543 3456666666
Q ss_pred ccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEc
Q 003813 141 LQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDL 220 (793)
Q Consensus 141 L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L 220 (793)
+++|.+.+.+|.. ++++++|++|++++|. +.+.+|..+.++++|++|++++|.+.+.+|..++.+ ++|++|++
T Consensus 147 Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L 219 (968)
T PLN00113 147 LSNNMLSGEIPND-IGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-----KSLKWIYL 219 (968)
T ss_pred CcCCcccccCChH-HhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-----CCccEEEC
Confidence 6666665555554 5666666666666665 555555555555555555555555555555555444 55555555
Q ss_pred cCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeee
Q 003813 221 GSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIF 300 (793)
Q Consensus 221 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 300 (793)
++|++.+.+|..++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|.+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l-- 296 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSL-- 296 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCee--
Confidence 55555555555555555555555555555555555555555555555555555544443 344455555555554444
Q ss_pred ecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCC
Q 003813 301 KINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDS 380 (793)
Q Consensus 301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 380 (793)
.+.+|.++..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|
T Consensus 297 ----------------------~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p---- 349 (968)
T PLN00113 297 ----------------------SGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIP---- 349 (968)
T ss_pred ----------------------ccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCC----
Confidence 444555555555666666666655555544432 34445555555444443333
Q ss_pred CCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCC
Q 003813 381 PSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSI 460 (793)
Q Consensus 381 ~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 460 (793)
.. +..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+
T Consensus 350 -------------------------~~----l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 350 -------------------------KN----LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred -------------------------hH----HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence 11 1225788889999999988888888888999999999999998999989
Q ss_pred CCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcC
Q 003813 461 GTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQ 540 (793)
Q Consensus 461 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 540 (793)
..+++|+.|++++|++++..|..|..+++|+.|++++|.+++.+|..+. .+++|++|++++|++.+.+|..+ ..++|+
T Consensus 401 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~ 478 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLE 478 (968)
T ss_pred hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccce
Confidence 9999999999999999998999999999999999999999988888776 68999999999999998888765 458999
Q ss_pred EEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceee
Q 003813 541 ILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGE 620 (793)
Q Consensus 541 ~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 620 (793)
.|++++|++++.+|..+.+++.| +.|+|++|++++.
T Consensus 479 ~L~ls~n~l~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~~ 514 (968)
T PLN00113 479 NLDLSRNQFSGAVPRKLGSLSEL--------------------------------------------MQLKLSENKLSGE 514 (968)
T ss_pred EEECcCCccCCccChhhhhhhcc--------------------------------------------CEEECcCCcceee
Confidence 99999999999888877766554 7899999999999
Q ss_pred CccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccC
Q 003813 621 VPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 700 (793)
Q Consensus 621 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~ 700 (793)
+|+.++++++|++|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+++|+++|+++|.+|..+++.
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~ 594 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCccccCC-CccCCC
Q 003813 701 SFGGSSFADN-DLCGAP 716 (793)
Q Consensus 701 ~~~~~~~~~n-~l~~~~ 716 (793)
++...++.|| .+||.+
T Consensus 595 ~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 595 AINASAVAGNIDLCGGD 611 (968)
T ss_pred ccChhhhcCCccccCCc
Confidence 9999999999 899865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-60 Score=574.48 Aligned_cols=539 Identities=31% Similarity=0.467 Sum_probs=460.0
Q ss_pred CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCC-CCCccCCCCCCCCEEECcCccCCCcccccccCCCCCC
Q 003813 35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHH-FPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLK 113 (793)
Q Consensus 35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 113 (793)
..+++.|++++|.+++.. +..+..+++|++|+|++|++++ ++...+.++++|++|+|++|.+++.+|. +.+++|+
T Consensus 68 ~~~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CCcEEEEEecCCCccccC--ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 468999999999988753 4467889999999999999974 5555566899999999999999987775 4689999
Q ss_pred EEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccC
Q 003813 114 YLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGF 193 (793)
Q Consensus 114 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~ 193 (793)
+|++++|.+.+..|..++++++|++|++++|.+.+.+|.. ++++++|++|++++|. +.+.+|..++++++|+.|++++
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcC
Confidence 9999999999889999999999999999999998888876 8999999999999998 8889999999999999999999
Q ss_pred CcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 003813 194 TNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273 (793)
Q Consensus 194 n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 273 (793)
|.+++.+|..++.+ ++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|.++.++++|++|++++|.+
T Consensus 222 n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 222 NNLSGEIPYEIGGL-----TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CccCCcCChhHhcC-----CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 99999999998888 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChh
Q 003813 274 NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRR 353 (793)
Q Consensus 274 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 353 (793)
.+.+|. .+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|++.+.+|..
T Consensus 297 ~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 297 SGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred ccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 888876 6788888888888888876655555555555555555555555444544444444444444444444333322
Q ss_pred HHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC
Q 003813 354 FWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP 433 (793)
Q Consensus 354 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 433 (793)
+ + .+++|+.|++++|.+.+.+|
T Consensus 376 ~------------------------------------------------------~----~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 376 L------------------------------------------------------C----SSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred H------------------------------------------------------h----CcCCCCEEECcCCEecccCC
Confidence 2 1 25778889999999988899
Q ss_pred CCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcc
Q 003813 434 DCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS 513 (793)
Q Consensus 434 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~ 513 (793)
..+..+++|+.|++++|++++..|..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. .+
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~ 475 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SK 475 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cc
Confidence 9999999999999999999999999999999999999999999999988888999999999999999988888664 68
Q ss_pred cCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhh
Q 003813 514 RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVM 593 (793)
Q Consensus 514 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (793)
+|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+.++++|
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L------------------------------ 525 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL------------------------------ 525 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC------------------------------
Confidence 99999999999999999999999999999999999999999888776665
Q ss_pred ccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccc
Q 003813 594 KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSM 673 (793)
Q Consensus 594 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 673 (793)
+.|+|++|.+++.+|..+.++++|++|||++|+++|.+|..+.++++|+.|++++|+++|.+|..
T Consensus 526 --------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~- 590 (968)
T PLN00113 526 --------------VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST- 590 (968)
T ss_pred --------------CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-
Confidence 78999999999999999999999999999999999999999999999999999999999999964
Q ss_pred cCCCCCCeEEcccCccc
Q 003813 674 SNLSFLNYLNLSNNNLN 690 (793)
Q Consensus 674 ~~l~~L~~L~ls~N~l~ 690 (793)
+....+....+.+|+.-
T Consensus 591 ~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 591 GAFLAINASAVAGNIDL 607 (968)
T ss_pred chhcccChhhhcCCccc
Confidence 33444555666777643
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-39 Score=329.83 Aligned_cols=410 Identities=22% Similarity=0.226 Sum_probs=291.5
Q ss_pred CCEEECcCccCCCcccccccCCC--CCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCC-CCCcEE
Q 003813 88 LTTLDLSENEFQGQIPSRLGNLT--SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENL-TSIQTL 164 (793)
Q Consensus 88 L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l-~~L~~L 164 (793)
-+.||.+.+.+.......+.+.- .-+.|++++|++....+..|.++++|+++++..|.++ .||. |+.. .+|+.|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L 130 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGHLEKL 130 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccceeEE
Confidence 35677777777643323332221 3345777777777776677777777777777777776 6665 3332 235555
Q ss_pred EcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeC
Q 003813 165 LLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDL 244 (793)
Q Consensus 165 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 244 (793)
+|.+|. ++..-.+.+..+ +.|+.|||+.|.|+......|..-.++++|+|
T Consensus 131 ~L~~N~-------------------------I~sv~se~L~~l-----~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 131 DLRHNL-------------------------ISSVTSEELSAL-----PALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred eeeccc-------------------------cccccHHHHHhH-----hhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 555553 333333344444 66777777777776665566666667777777
Q ss_pred cCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCC
Q 003813 245 SNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP 324 (793)
Q Consensus 245 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 324 (793)
++|+|+......|..+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|.+......
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~l-------------------- 239 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGL-------------------- 239 (873)
T ss_pred ccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhh--------------------
Confidence 777777766677777777777777777776 56665666666666666666655321111
Q ss_pred CCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccc
Q 003813 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSI 404 (793)
Q Consensus 325 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~ 404 (793)
T Consensus 240 -------------------------------------------------------------------------------- 239 (873)
T KOG4194|consen 240 -------------------------------------------------------------------------------- 239 (873)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccc
Q 003813 405 FHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSF 484 (793)
Q Consensus 405 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 484 (793)
.++.+++|+.|.|..|.+.....+.|..+.++++|+|+.|++......++-++++|+.|++|+|.|..+.++++
T Consensus 240 ------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 240 ------TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred ------hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 11225666677777777776777888889999999999999988778888889999999999999999999999
Q ss_pred cCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCc
Q 003813 485 NNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMA 564 (793)
Q Consensus 485 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 564 (793)
..+++|+.|+|++|+|+ .+++.-+..+..|++|+|++|.++......|..+++|++|||++|.+++.+.+.
T Consensus 314 sftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa-------- 384 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA-------- 384 (873)
T ss_pred hhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc--------
Confidence 99999999999999998 677766667889999999999998666677888889999999999887655431
Q ss_pred cccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCccccc
Q 003813 565 TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR 644 (793)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 644 (793)
...|.++++|+.|+|.+|++...
T Consensus 385 ---------------------------------------------------------a~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 385 ---------------------------------------------------------AVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred ---------------------------------------------------------hhhhccchhhhheeecCceeeec
Confidence 12455677778888888888755
Q ss_pred CCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCC
Q 003813 645 IPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGG 704 (793)
Q Consensus 645 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~ 704 (793)
...+|.++.+|+.|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|.|.-.|..+|+..
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHh
Confidence 55678888888888888888877778888877 788888877777777776655555433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-40 Score=331.31 Aligned_cols=390 Identities=25% Similarity=0.279 Sum_probs=305.9
Q ss_pred ccEEEccCCCCCCCCCccCCCC--CCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEc
Q 003813 64 LKELKLSFCKLHHFPPLSSANF--SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSL 141 (793)
Q Consensus 64 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 141 (793)
-+.|+.+++.+..+....+.+. +.-++||+++|.+..+.+..|.++++|+++++.+|.++. +|...+...+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEee
Confidence 4568888888877755444432 345669999999998888889999999999999999876 6776666777999999
Q ss_pred cCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEcc
Q 003813 142 QSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLG 221 (793)
Q Consensus 142 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 221 (793)
.+|.|+ .+....++.++.|+.|||+.|. ++......|..- .++++|+|+
T Consensus 133 ~~N~I~-sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~-----------------------------~ni~~L~La 181 (873)
T KOG4194|consen 133 RHNLIS-SVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAK-----------------------------VNIKKLNLA 181 (873)
T ss_pred eccccc-cccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCC-----------------------------CCceEEeec
Confidence 999998 7777778899999999999985 332221222111 578889999
Q ss_pred CcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeee
Q 003813 222 SCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301 (793)
Q Consensus 222 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 301 (793)
+|.|+......|..+.+|..|.|+.|+++...+..|..++.|+.|+|..|+|. .+....|.++++|+.|.+..|.+...
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccc
Confidence 99998888888999999999999999999888888999999999999999996 55566899999999999999999999
Q ss_pred cCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCC
Q 003813 302 INPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSP 381 (793)
Q Consensus 302 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 381 (793)
..+.|..+.++++|+++.|++...-..|+.++++|+.|++|.|.|...-+. .|
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-~W-------------------------- 313 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-SW-------------------------- 313 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc-hh--------------------------
Confidence 999999999999999999999988889999999999999999988653222 22
Q ss_pred CCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCC
Q 003813 382 SMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIG 461 (793)
Q Consensus 382 ~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 461 (793)
.++++|++|+|+.|+++...++.|..+..|++|+|++|.+...-..+|.
T Consensus 314 -------------------------------sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 314 -------------------------------SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred -------------------------------hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 2256677777777777766677777777777777777777766666777
Q ss_pred CCCCccEEEccCCccccccC---ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCC
Q 003813 462 TLSSLMSLNLRNNRLSGIIP---TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLAS 538 (793)
Q Consensus 462 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 538 (793)
++++|++|||++|.++..+. ..|.++++|+.|++.+|++. .||...+.++..|+.|+|.+|.|..+.|.+|..+ .
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~ 440 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-E 440 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-h
Confidence 77777777777777765544 34667777777777777776 7777777777777777777777776777777766 6
Q ss_pred cCEEEccc
Q 003813 539 LQILDVAY 546 (793)
Q Consensus 539 L~~L~Ls~ 546 (793)
|+.|.+..
T Consensus 441 Lk~Lv~nS 448 (873)
T KOG4194|consen 441 LKELVMNS 448 (873)
T ss_pred hhhhhhcc
Confidence 66665554
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.4e-42 Score=330.75 Aligned_cols=265 Identities=22% Similarity=0.333 Sum_probs=158.1
Q ss_pred CccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEcc
Q 003813 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQ 142 (793)
Q Consensus 63 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 142 (793)
.++.|.+++|.+..+.+ .+.++..|.+|++++|++. ..|.+++.+..++.++.++|++.. +|..++.+.+|+.++.+
T Consensus 46 ~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhcc
Confidence 45556666666655554 4555566666666666665 455556666666666666666554 45555666666666666
Q ss_pred CCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccC
Q 003813 143 SNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGS 222 (793)
Q Consensus 143 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 222 (793)
+|.+. .++.. ++.+..|+.++..+|+ ....|+.+.++.++..+++.+|.+....|..+. + +.|++||...
T Consensus 123 ~n~~~-el~~~-i~~~~~l~dl~~~~N~--i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m-----~~L~~ld~~~ 192 (565)
T KOG0472|consen 123 SNELK-ELPDS-IGRLLDLEDLDATNNQ--ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-M-----KRLKHLDCNS 192 (565)
T ss_pred cccee-ecCch-HHHHhhhhhhhccccc--cccCchHHHHHHHHHHhhccccchhhCCHHHHH-H-----HHHHhcccch
Confidence 66665 44444 5556666666666554 234555556666666666666665554444444 3 5677777766
Q ss_pred cccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeec
Q 003813 223 CQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKI 302 (793)
Q Consensus 223 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 302 (793)
|.+ +.+|..++.+.+|+-|++..|++. ..| .|.+|..|++++++.|++. .+|.....+++++..||+..|++.. .
T Consensus 193 N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~ 267 (565)
T KOG0472|consen 193 NLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-V 267 (565)
T ss_pred hhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-C
Confidence 655 456666777777777777777776 455 6677777777777777765 5666555667777777777776642 2
Q ss_pred CCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccc
Q 003813 303 NPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRIS 347 (793)
Q Consensus 303 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 347 (793)
|.....+.+|+.|++++|.++ .+|..++++ +|+.|-+.+|.+.
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 233333444444444444444 445556666 6666666666653
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.3e-42 Score=331.96 Aligned_cols=491 Identities=23% Similarity=0.351 Sum_probs=263.5
Q ss_pred CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEE
Q 003813 12 LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTL 91 (793)
Q Consensus 12 L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 91 (793)
++.|++++|.++.+.++ +.++..|.+|++++|+++..| .+++.+..++.|+.++|++..+|+ .+..+.+|+.+
T Consensus 47 l~~lils~N~l~~l~~d---l~nL~~l~vl~~~~n~l~~lp---~aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l 119 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLRED---LKNLACLTVLNVHDNKLSQLP---AAIGELEALKSLNVSHNKLSELPE-QIGSLISLVKL 119 (565)
T ss_pred hhhhhhccCchhhccHh---hhcccceeEEEeccchhhhCC---HHHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhh
Confidence 45555555555444333 345555666666666655542 235555556666666666655554 45555566666
Q ss_pred ECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCC
Q 003813 92 DLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDE 171 (793)
Q Consensus 92 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~ 171 (793)
+.++|.+. ..|++++.+..|..++..+|+++. .|+.+..+.+|..+++.+|++. ..|+..+ +++.|++|+...|
T Consensus 120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N-- 193 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSN-- 193 (565)
T ss_pred hcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchh--
Confidence 66666655 445555566666666666666555 4455555556666666666655 4444422 3556666665555
Q ss_pred CCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCC
Q 003813 172 LGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG 251 (793)
Q Consensus 172 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 251 (793)
.-+.+|+.++.+.+|..|++..|.+.. .| .|+.+ ..|++++++.|+|.....+....++++..||+.+|++.
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gc-----s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRF-LP-EFPGC-----SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhccccc-CC-CCCcc-----HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-
Confidence 445555556655555555555555543 22 22222 34555555555553322222335555555555555555
Q ss_pred CcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccc
Q 003813 252 SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQ 331 (793)
Q Consensus 252 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 331 (793)
..|..+.-+++|++||+++|.+++ .|. .++++ .|+.|.+.+|++.... ..+-
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is~-Lp~-sLgnl-hL~~L~leGNPlrTiR-------------------------r~ii 317 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDISS-LPY-SLGNL-HLKFLALEGNPLRTIR-------------------------REII 317 (565)
T ss_pred cCchHHHHhhhhhhhcccCCcccc-CCc-ccccc-eeeehhhcCCchHHHH-------------------------HHHH
Confidence 445555555555555555555542 232 34555 5555555555443211 0000
Q ss_pred cCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcc
Q 003813 332 SQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQG 411 (793)
Q Consensus 332 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~ 411 (793)
+. ....+...+++ .+....+.-.. ..... .+..+.
T Consensus 318 ~~----------------gT~~vLKyLrs---------~~~~dglS~se------~~~e~---------~~t~~~----- 352 (565)
T KOG0472|consen 318 SK----------------GTQEVLKYLRS---------KIKDDGLSQSE------GGTET---------AMTLPS----- 352 (565)
T ss_pred cc----------------cHHHHHHHHHH---------hhccCCCCCCc------ccccc---------cCCCCC-----
Confidence 00 00001000000 00000000000 00000 000000
Q ss_pred cCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCC---ccEEEccCCccccccCccccCCC
Q 003813 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSS---LMSLNLRNNRLSGIIPTSFNNFT 488 (793)
Q Consensus 412 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~ 488 (793)
+.. .....+.+.+.|++++-+++ .+|+....... ....+++.|++. .+|..+..+.
T Consensus 353 ------------------~~~-~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lk 411 (565)
T KOG0472|consen 353 ------------------ESF-PDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELK 411 (565)
T ss_pred ------------------Ccc-cchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHH
Confidence 000 11122334555555555555 33433222222 556666666666 4555555544
Q ss_pred CCC-EEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCcccc
Q 003813 489 ILE-ALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTD 567 (793)
Q Consensus 489 ~L~-~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~ 567 (793)
.+. .+++++|.+. .+|..+. .+++|..|+|++|.+. .+|..++.+..||+||++.|++. .+|.++..+..+
T Consensus 412 elvT~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l---- 483 (565)
T KOG0472|consen 412 ELVTDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL---- 483 (565)
T ss_pred HHHHHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH----
Confidence 443 3445555553 5565555 5777777777777777 67777778888888888888876 677666554443
Q ss_pred CCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCc
Q 003813 568 SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPD 647 (793)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 647 (793)
+.+-.++|++....|..+.++.+|.+|||.+|.+. .+|.
T Consensus 484 ----------------------------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 484 ----------------------------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred ----------------------------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 23344567777566666899999999999999998 8888
Q ss_pred cccCcCCCCEEECCCCcCC
Q 003813 648 NIGVMRSIESLDFSANQLS 666 (793)
Q Consensus 648 ~l~~l~~L~~L~Ls~N~l~ 666 (793)
.+++|++|++|++++|.+.
T Consensus 523 ~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhccccceeEEEecCCccC
Confidence 8999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-38 Score=334.62 Aligned_cols=483 Identities=26% Similarity=0.374 Sum_probs=309.6
Q ss_pred EeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECc
Q 003813 15 LDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLS 94 (793)
Q Consensus 15 L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 94 (793)
+|.+.+.++.+|..+ + .-..+..|++..|-+-..| ...+.+.-+|+.|++++|.+...|. .+..+++|+.|+++
T Consensus 3 vd~s~~~l~~ip~~i--~-~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~-~it~l~~L~~ln~s 76 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQI--L-NNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPI-QITLLSHLRQLNLS 76 (1081)
T ss_pred cccccccCcccchhh--c-cHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCc-hhhhHHHHhhcccc
Confidence 566666666555543 2 2233677777777666654 2234445557777777777766654 56666677777777
Q ss_pred CccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCC
Q 003813 95 ENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG 174 (793)
Q Consensus 95 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~ 174 (793)
.|.|. ..|.+..++.+|+++.|..|.+.. .|..+..+.+|++|++++|++. .+|.. +..++.+..+..++|. ...
T Consensus 77 ~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N~-~~~ 151 (1081)
T KOG0618|consen 77 RNYIR-SVPSSCSNMRNLQYLNLKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNNE-KIQ 151 (1081)
T ss_pred hhhHh-hCchhhhhhhcchhheeccchhhc-CchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcch-hhh
Confidence 77776 456666777777777777766654 5666777777777777777766 66655 5666666666666652 110
Q ss_pred CCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcc
Q 003813 175 KIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIP 254 (793)
Q Consensus 175 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 254 (793)
. ++. ..++.+++..|.+.+.++..+..++. .|+|.+|.+. .
T Consensus 152 ~----------------------------lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~-- 192 (1081)
T KOG0618|consen 152 R----------------------------LGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V-- 192 (1081)
T ss_pred h----------------------------hcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--
Confidence 0 000 12444444444444444443433333 3555555443 1
Q ss_pred hhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCC
Q 003813 255 LSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQK 334 (793)
Q Consensus 255 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 334 (793)
..+..+++|+.|....|++.. +. -.- +
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~-l~----~~g------------------------------------------------~ 219 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSE-LE----ISG------------------------------------------------P 219 (1081)
T ss_pred hhhhhccchhhhhhhhcccce-EE----ecC------------------------------------------------c
Confidence 123344444444444444431 10 011 2
Q ss_pred CCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCC
Q 003813 335 KLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENF 414 (793)
Q Consensus 335 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~ 414 (793)
+++.|+.++|.++...+.. ....++++|+++|++++. |++++ .
T Consensus 220 ~l~~L~a~~n~l~~~~~~p--------------------------------~p~nl~~~dis~n~l~~l-p~wi~----~ 262 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHP--------------------------------VPLNLQYLDISHNNLSNL-PEWIG----A 262 (1081)
T ss_pred chheeeeccCcceeecccc--------------------------------ccccceeeecchhhhhcc-hHHHH----h
Confidence 3333333333332111100 133444555555555442 23333 3
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCC-CCEE
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI-LEAL 493 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 493 (793)
+.+|+.++..+|+++ .+|..+....+|+.|++..|.+. .+|....+.+.|++|+|..|++....+..+.-... |..|
T Consensus 263 ~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 263 CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTL 340 (1081)
T ss_pred cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHH
Confidence 788889999999886 67777788888999999999988 56767777889999999999988554444444443 7788
Q ss_pred eCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCc-cccccccCccccCCCCC
Q 003813 494 DMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR-CINNFSAMATTDSSDQS 572 (793)
Q Consensus 494 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~ 572 (793)
+.+.|++. ..|..-....+.|+.|.+.+|.++...-..+-+..+|++|+|++|++. .+|+ .+.++..
T Consensus 341 n~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~---------- 408 (1081)
T KOG0618|consen 341 NVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEE---------- 408 (1081)
T ss_pred hhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHH----------
Confidence 88888887 666555556778999999999998776667788889999999999986 4453 3444433
Q ss_pred CccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCc
Q 003813 573 NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM 652 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 652 (793)
|+.|+||+|+++ .+|+.+..+..|++|...+|++. ..| .+..+
T Consensus 409 ----------------------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l 451 (1081)
T KOG0618|consen 409 ----------------------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL 451 (1081)
T ss_pred ----------------------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence 478899999998 78899999999999999999998 777 78899
Q ss_pred CCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCc
Q 003813 653 RSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNN 688 (793)
Q Consensus 653 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 688 (793)
++|+.+|+|.|+++...-..-..-+.|++||+++|.
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999999999985443222222789999999997
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-36 Score=322.68 Aligned_cols=495 Identities=25% Similarity=0.320 Sum_probs=298.9
Q ss_pred CCCCCCCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCcc
Q 003813 2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLS 81 (793)
Q Consensus 2 ip~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 81 (793)
||..+-.-..++.|+++.|-+...| .++..+.-+|+.|++++|.+...|. .+..+.+|+.|+++.|.|...+. .
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~---~it~l~~L~~ln~s~n~i~~vp~-s 86 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPI---QITLLSHLRQLNLSRNYIRSVPS-S 86 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCc---hhhhHHHHhhcccchhhHhhCch-h
Confidence 5666666667899999998765444 5556777779999999999998643 57789999999999999999984 7
Q ss_pred CCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCC
Q 003813 82 SANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI 161 (793)
Q Consensus 82 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L 161 (793)
..++.+|+++.|..|.+. ..|..+..+++|++|++++|.+.. +|..+..++.++.++.++|..... ++... .
T Consensus 87 ~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~-----lg~~~-i 158 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQR-----LGQTS-I 158 (1081)
T ss_pred hhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhh-----hcccc-c
Confidence 889999999999999998 789999999999999999999976 788899999999999999932212 23333 7
Q ss_pred cEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCE
Q 003813 162 QTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241 (793)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 241 (793)
+.+++..|. +.+.++..+..+.. .+++.+|.+. ...+..+.+|+.
T Consensus 159 k~~~l~~n~-l~~~~~~~i~~l~~--~ldLr~N~~~--------------------------------~~dls~~~~l~~ 203 (1081)
T KOG0618|consen 159 KKLDLRLNV-LGGSFLIDIYNLTH--QLDLRYNEME--------------------------------VLDLSNLANLEV 203 (1081)
T ss_pred hhhhhhhhh-cccchhcchhhhhe--eeecccchhh--------------------------------hhhhhhccchhh
Confidence 777887776 66666655555544 4555555443 111333444444
Q ss_pred EeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCcc
Q 003813 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCR 321 (793)
Q Consensus 242 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 321 (793)
+....|++.... -.-++|+.|+.++|.++...+. .--.+|++++++.|.
T Consensus 204 l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~------------------------ 252 (1081)
T KOG0618|consen 204 LHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNN------------------------ 252 (1081)
T ss_pred hhhhhcccceEE----ecCcchheeeeccCcceeeccc---cccccceeeecchhh------------------------
Confidence 444444443211 0124455555555554411110 001122222222222
Q ss_pred CCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccc
Q 003813 322 LGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS 401 (793)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~ 401 (793)
+. .+|.|+..+.+|+.++..+|+++. +|...+. ..+|+.|.+.+|.+.-..|.
T Consensus 253 l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~-~~~L~~l~~~~nel~yip~~------------------------ 305 (1081)
T KOG0618|consen 253 LS-NLPEWIGACANLEALNANHNRLVA-LPLRISR-ITSLVSLSAAYNELEYIPPF------------------------ 305 (1081)
T ss_pred hh-cchHHHHhcccceEecccchhHHh-hHHHHhh-hhhHHHHHhhhhhhhhCCCc------------------------
Confidence 22 344566666666666666666632 3433332 23333344433333211111
Q ss_pred ccccchhhcccCCCCCccEEEccCCcccccCCCCccCCC-CCCEEEccCCcccccCCC-CCCCCCCccEEEccCCccccc
Q 003813 402 GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWP-RLRMLNLRNNNFTGSLPM-SIGTLSSLMSLNLRNNRLSGI 479 (793)
Q Consensus 402 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~ 479 (793)
....+.|+.|+|..|++....+..|.-.. .|+.|+.+.|++.. .|. .=..++.|+.|++.+|.++..
T Consensus 306 ----------le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 306 ----------LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred ----------ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCccccc
Confidence 11145566666666666533222222222 25666666666652 221 111245567777777777665
Q ss_pred cCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccc
Q 003813 480 IPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINN 559 (793)
Q Consensus 480 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 559 (793)
.-..+.+..+|+.|+|++|++. ++|+....++..|++|+||+|+++ .+|..+..+..|++|...+|++.
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~--------- 443 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL--------- 443 (1081)
T ss_pred chhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee---------
Confidence 5556666677777777777765 666666666666666666666666 55666666666666666666654
Q ss_pred cccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCC
Q 003813 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYN 639 (793)
Q Consensus 560 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 639 (793)
..| ++.+++.|+.+|+|.|
T Consensus 444 ------------------------------------------------------------~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 444 ------------------------------------------------------------SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred ------------------------------------------------------------ech-hhhhcCcceEEecccc
Confidence 334 4555666666666666
Q ss_pred ccccc-CCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccC
Q 003813 640 LFTGR-IPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN 687 (793)
Q Consensus 640 ~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 687 (793)
+++.. +|..... ++|++|||++|.-....-..|..++++...++.-|
T Consensus 463 ~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 463 NLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 66522 2222222 56666666666643344455556666666666655
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.5e-33 Score=284.26 Aligned_cols=385 Identities=23% Similarity=0.373 Sum_probs=237.1
Q ss_pred CCCCcEEEcCCCCCCC-CCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCC
Q 003813 158 LTSIQTLLLSGNDELG-GKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRF 236 (793)
Q Consensus 158 l~~L~~L~L~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 236 (793)
++-.+-.++++|. ++ +..|.....++.++.|.+....+.. +|+.++.+ .+|++|.+++|++.. +-..+..+
T Consensus 6 LpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~l-----qkLEHLs~~HN~L~~-vhGELs~L 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRL-----QKLEHLSMAHNQLIS-VHGELSDL 77 (1255)
T ss_pred cceeecccccCCc-CCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHH-----hhhhhhhhhhhhhHh-hhhhhccc
Confidence 3445566677776 44 5566666666666666665555442 55555555 556666666665532 22234455
Q ss_pred CCCCEEeCcCCcCC-CCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEE
Q 003813 237 KGLNFLDLSNTTMD-GSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGL 315 (793)
Q Consensus 237 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 315 (793)
+.|+.+++..|++. .-+|..+..+.-|+.||||+|++. .+
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-Ev-------------------------------------- 118 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EV-------------------------------------- 118 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hc--------------------------------------
Confidence 55555555555542 133444555555555555555554 33
Q ss_pred EccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEc
Q 003813 316 GVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDL 395 (793)
Q Consensus 316 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~l 395 (793)
|..+...+++-.|++|+|+|. .||..++..+..|-.||+|+|++...-|.+
T Consensus 119 -----------P~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~----------------- 169 (1255)
T KOG0444|consen 119 -----------PTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQI----------------- 169 (1255)
T ss_pred -----------chhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHH-----------------
Confidence 333444455555666666653 366666666666666666666553222211
Q ss_pred ccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccc-ccCCCCCCCCCCccEEEccCC
Q 003813 396 SNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT-GSLPMSIGTLSSLMSLNLRNN 474 (793)
Q Consensus 396 s~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n 474 (793)
..+..|++|+|++|.+....-..+-.+++|++|.+++.+-+ .-+|.++..+.+|..+|+|.|
T Consensus 170 -----------------RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 170 -----------------RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred -----------------HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 11456666667666554333334445666777777766543 356777777777777777777
Q ss_pred ccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc-ccc
Q 003813 475 RLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS-GTI 553 (793)
Q Consensus 475 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~ 553 (793)
.+. +.|+++-++++|+.|+|++|+|+ .+..... ...+|++|+++.|+++ .+|.+++.++.|+.|.+.+|+++ .-+
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence 777 66777777777777788877776 5554444 3567788888888887 67888888888888888888774 246
Q ss_pred CccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCce
Q 003813 554 PRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQS 633 (793)
Q Consensus 554 p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 633 (793)
|..++.+.+| +.+..++|.+. ..|+.+..+..|+.
T Consensus 309 PSGIGKL~~L--------------------------------------------evf~aanN~LE-lVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 309 PSGIGKLIQL--------------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQK 343 (1255)
T ss_pred ccchhhhhhh--------------------------------------------HHHHhhccccc-cCchhhhhhHHHHH
Confidence 6666666655 34555666665 77778888888888
Q ss_pred eeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcc
Q 003813 634 LNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLS 685 (793)
Q Consensus 634 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 685 (793)
|.|++|++. .+|+++.-++.|+.||+..|.-....|.-=..-++|+.-++.
T Consensus 344 L~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 344 LKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 888888877 778888888888888888876553333322222455554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.9e-33 Score=285.62 Aligned_cols=374 Identities=25% Similarity=0.381 Sum_probs=283.2
Q ss_pred CCCCCCCEEECcCccCC-CcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCC
Q 003813 83 ANFSSLTTLDLSENEFQ-GQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI 161 (793)
Q Consensus 83 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L 161 (793)
+-++-.+-.|+++|.++ +..|.....+++++.|.|...++.. +|+.++.+.+|++|.+++|++. .+... ++.++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhh
Confidence 34556677888888888 4578888888888888888887765 7888888888888888888887 55444 7788888
Q ss_pred cEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCE
Q 003813 162 QTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNF 241 (793)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 241 (793)
+.+.+..|+.-...+|..+..+..|+.|+++.|++.. .|..+... .++-.|+|++|+|..+....+.+++.|-.
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~A-----Kn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYA-----KNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhh-----cCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 8888888885567788888888888888888888764 56666665 77888888888886555555678888888
Q ss_pred EeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCcc
Q 003813 242 LDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCR 321 (793)
Q Consensus 242 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 321 (793)
||||+|++. .+|..+..+..|++|+|++|.+.- ..-..+..+++|+.|.+++.+-+
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqRT---------------------- 210 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQRT---------------------- 210 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccch----------------------
Confidence 888888887 667778888888888888887652 21113344555666666654432
Q ss_pred CCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccc
Q 003813 322 LGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS 401 (793)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~ 401 (793)
...+|..+..+.+|..+|+|.|.+. .+|..++. +++|+.|++|+|+++..--
T Consensus 211 -l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~iteL~~------------------------- 262 (1255)
T KOG0444|consen 211 -LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKITELNM------------------------- 262 (1255)
T ss_pred -hhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCceeeeec-------------------------
Confidence 1255666677777777777777764 35555443 5666666666666542111
Q ss_pred ccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccc-ccCCCCCCCCCCccEEEccCCcccccc
Q 003813 402 GSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFT-GSLPMSIGTLSSLMSLNLRNNRLSGII 480 (793)
Q Consensus 402 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 480 (793)
..+...+|++|++++|+++ ..|+++++++.|+.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. ..
T Consensus 263 ---------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lV 331 (1255)
T KOG0444|consen 263 ---------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LV 331 (1255)
T ss_pred ---------cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cC
Confidence 1112467999999999998 78999999999999999999887 347888999999999999999988 88
Q ss_pred CccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCC
Q 003813 481 PTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530 (793)
Q Consensus 481 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 530 (793)
|+.++.|..|+.|.|+.|++. .+|+.+. -++.|+.||++.|.-....|
T Consensus 332 PEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 332 PEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCccCCC
Confidence 999999999999999999998 8999887 68999999999998663333
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=3.8e-27 Score=229.34 Aligned_cols=225 Identities=22% Similarity=0.269 Sum_probs=142.7
Q ss_pred cCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCC
Q 003813 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILE 491 (793)
Q Consensus 412 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 491 (793)
+..+++|++|+|++|+++++-+.+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 44578899999999999988889999999999999999999877777888899999999999999988899999999999
Q ss_pred EEeCCCCcccc-cCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccc---ccCccccccccCcccc
Q 003813 492 ALDMGENELVG-NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG---TIPRCINNFSAMATTD 567 (793)
Q Consensus 492 ~L~L~~N~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~~~ 567 (793)
+|.+-.|++.- .--.|+.+. |+.+...|..| . +....++.++++.+.+.. .-|...+..+
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~W--------lr~~~~~~~~~-C-q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~------ 413 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEW--------LRKKSVVGNPR-C-QSPGFVRQIPISDVAFGDFRCGGPEELGCLT------ 413 (498)
T ss_pred eeehccCcccCccchHHHHHH--------HhhCCCCCCCC-C-CCCchhccccchhccccccccCCccccCCCC------
Confidence 99988887641 112333322 22233222222 1 223356666666665531 1111111000
Q ss_pred CCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCc
Q 003813 568 SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPD 647 (793)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 647 (793)
...++.. ....+ +...-|+..+. .+|..+- ..-.+|++.+|.++ .+|+
T Consensus 414 s~~cP~~--------c~c~~--------------------tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~ 461 (498)
T KOG4237|consen 414 SSPCPPP--------CTCLD--------------------TVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPD 461 (498)
T ss_pred CCCCCCC--------cchhh--------------------hhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCH
Confidence 0000000 00000 11223333333 3333221 23457788888887 6776
Q ss_pred cccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccC
Q 003813 648 NIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN 687 (793)
Q Consensus 648 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 687 (793)
+ .+.+| .+|+|+|+++..--..|.++++|.+|-+|+|
T Consensus 462 ~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 462 E--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred H--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 6 56777 7888888887666677888888888888876
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-26 Score=226.05 Aligned_cols=258 Identities=22% Similarity=0.216 Sum_probs=174.1
Q ss_pred CccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcC-CcCccCCcccccCCCCCCEEEc
Q 003813 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF-NQFNSVVPGWLSKLNDLEFLSL 141 (793)
Q Consensus 63 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L 141 (793)
.-.+++|..|+|+.+|+.+|+.+++||.||||+|.|+.+.|++|.++++|..|-+-+ |+|+.+..+.|+++..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 455666777777777777777777777777777777766667777776666555444 6666666666667777777776
Q ss_pred cCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccc-----------------------
Q 003813 142 QSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ----------------------- 198 (793)
Q Consensus 142 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~----------------------- 198 (793)
.-|++. -++..+|..+++|..|.+.+|. +...--..+..+..++.+.+..|.+..
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 666666 5555556667766666666664 332222355555556655555444110
Q ss_pred cchhHHhhh-----c----cccCCCccEEEccCcccccccc-cccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEc
Q 003813 199 DISEILGIF-----S----ACVANELESLDLGSCQIFGHMT-NQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL 268 (793)
Q Consensus 199 ~~~~~~~~~-----~----~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 268 (793)
.+|..+..- . .+....+..--.+.+...+..| ..|..+++|++|++++|+++++-+.+|.+...+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 111111000 0 0000111111122332333333 46889999999999999999999999999999999999
Q ss_pred cCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCC
Q 003813 269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLG 323 (793)
Q Consensus 269 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 323 (793)
..|++. .+....|.++..|++|++.+|+++...+..|.+...|.+|.+-.|.+.
T Consensus 306 ~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999997 677779999999999999999999999999999999999999887764
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.9e-22 Score=241.84 Aligned_cols=340 Identities=19% Similarity=0.250 Sum_probs=179.5
Q ss_pred CccCCCCCCCCEEECcCccC------CCcccccccCCC-CCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccC
Q 003813 79 PLSSANFSSLTTLDLSENEF------QGQIPSRLGNLT-SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNIS 151 (793)
Q Consensus 79 ~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~ 151 (793)
+.+|.++++|+.|.+..+.. ...+|..|..++ +|+.|.+.++.+.. +|..| ...+|++|++.+|.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccc
Confidence 34566666666666654421 223445555543 46666666666544 45444 3466666666666665 454
Q ss_pred hhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCccccccccc
Q 003813 152 SLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTN 231 (793)
Q Consensus 152 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 231 (793)
.. +..+++|+.|+++++. ....+| .+..+++|+.|++++|.....+|..+..+ ++|+.|++++|...+.+|.
T Consensus 628 ~~-~~~l~~Lk~L~Ls~~~-~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L-----~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 628 DG-VHSLTGLRNIDLRGSK-NLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYL-----NKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cc-cccCCCCCEEECCCCC-CcCcCC-ccccCCcccEEEecCCCCccccchhhhcc-----CCCCEEeCCCCCCcCccCC
Confidence 44 5566666666666654 223334 35556666666666655555566665555 6677777766654455554
Q ss_pred ccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeee-------cCC
Q 003813 232 QLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK-------INP 304 (793)
Q Consensus 232 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~ 304 (793)
.+ ++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|. . ..+++|++|.+.++..... .+.
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPS-N-LRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccc-c-ccccccccccccccchhhccccccccchh
Confidence 44 5667777777776554444432 346677777777664 4443 1 1455666666655321110 011
Q ss_pred CCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCC
Q 003813 305 NWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384 (793)
Q Consensus 305 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 384 (793)
.+..+++|+.|++++|.....+|.++.++++|+.|++++|...+.+|... .+++|+.|++++|.....+|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p-------- 842 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFP-------- 842 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccc--------
Confidence 11223456666666665555556666666666666666554333344332 23444444444433221111
Q ss_pred ccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCC
Q 003813 385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS 464 (793)
Q Consensus 385 ~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 464 (793)
. ..++|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..++
T Consensus 843 ---------------------~-------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 843 ---------------------D-------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred ---------------------c-------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 1 0244555555555555 3455555556666666655332223444455555
Q ss_pred CccEEEccCCc
Q 003813 465 SLMSLNLRNNR 475 (793)
Q Consensus 465 ~L~~L~L~~n~ 475 (793)
+|+.+++++|.
T Consensus 894 ~L~~L~l~~C~ 904 (1153)
T PLN03210 894 HLETVDFSDCG 904 (1153)
T ss_pred CCCeeecCCCc
Confidence 55555555553
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.7e-22 Score=239.31 Aligned_cols=338 Identities=20% Similarity=0.248 Sum_probs=152.6
Q ss_pred cccCCCCCCCEEeCcCCcC------CCCcchhhcCCC-CCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecC
Q 003813 231 NQLGRFKGLNFLDLSNTTM------DGSIPLSLGQIA-NLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKIN 303 (793)
Q Consensus 231 ~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 303 (793)
.+|..+++|+.|.+..+.. ...+|..+..++ +|+.|++.++.+. .+|. .| ...+|+.|++.+|.+.. .+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~-L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEK-LW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCccccc-cc
Confidence 3455566666666644321 223344444443 4666666665554 3443 22 34555555555555432 22
Q ss_pred CCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCC
Q 003813 304 PNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSM 383 (793)
Q Consensus 304 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 383 (793)
..+..+++|+.++++++.....+|. +..+++|++|++++|.....+|..+ ..+++|+.|++++|.....+|
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp------- 698 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILP------- 698 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccC-------
Confidence 3334444555555554443333332 3344444444444443333333322 123333333333332222222
Q ss_pred CccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCC
Q 003813 384 PLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTL 463 (793)
Q Consensus 384 ~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 463 (793)
..+ .+++|+.|++++|.....+|.. .++|++|++++|.+. .+|..+ .+
T Consensus 699 ----------------------~~i-----~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l 746 (1153)
T PLN03210 699 ----------------------TGI-----NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RL 746 (1153)
T ss_pred ----------------------CcC-----CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cc
Confidence 110 1345555555555443333332 234555555555554 344333 34
Q ss_pred CCccEEEccCCcccc-------ccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCC
Q 003813 464 SSLMSLNLRNNRLSG-------IIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL 536 (793)
Q Consensus 464 ~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 536 (793)
++|++|++.++.... ..+..+..+++|+.|++++|...+.+|.++. ++++|+.|++++|...+.+|..+ .+
T Consensus 747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L 824 (1153)
T PLN03210 747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NL 824 (1153)
T ss_pred cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence 555555554432111 1111122234455555555544444554443 45555555555544333444333 34
Q ss_pred CCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc
Q 003813 537 ASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN 616 (793)
Q Consensus 537 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 616 (793)
++|+.|++++|.....+|.. ...++.|+|++|.
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~-----------------------------------------------~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDI-----------------------------------------------STNISDLNLSRTG 857 (1153)
T ss_pred cccCEEECCCCCcccccccc-----------------------------------------------ccccCEeECCCCC
Confidence 45555555544332222211 1223556666666
Q ss_pred ceeeCccccccccCCceeeccC-CcccccCCccccCcCCCCEEECCCCc
Q 003813 617 FSGEVPVEVTNLQGLQSLNFSY-NLFTGRIPDNIGVMRSIESLDFSANQ 664 (793)
Q Consensus 617 l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~ 664 (793)
++ .+|..+..+++|+.|++++ |++. .+|..+..+++|+.+++++|.
T Consensus 858 i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred Cc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 65 4555566666666666665 3333 455555566666666666553
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.6e-21 Score=217.38 Aligned_cols=261 Identities=24% Similarity=0.280 Sum_probs=169.5
Q ss_pred CeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCC
Q 003813 337 NDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSK 416 (793)
Q Consensus 337 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~ 416 (793)
..|+++.+.++ .+|..+. .+++.|++++|+++. +|. ....++.|++++|+++. +|. .++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~--------lp~~Lk~LdLs~N~Lts-LP~-------lp~ 262 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--------LPPELRTLEVSGNQLTS-LPV-------LPP 262 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC--------CCCCCcEEEecCCccCc-ccC-------ccc
Confidence 34455555444 2444332 244555555555442 221 13445556666665553 232 135
Q ss_pred CccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCC
Q 003813 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG 496 (793)
Q Consensus 417 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 496 (793)
+|+.|++++|.++. +|.. .++|+.|++++|+++ .+|.. .++|+.|++++|+++++ |.. ..+|+.|+++
T Consensus 263 sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls 330 (788)
T PRK15387 263 GLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAY 330 (788)
T ss_pred ccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCC---cccccccccc
Confidence 67778888887763 3432 246777888888877 34432 46788888888887753 332 2457777888
Q ss_pred CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813 497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF 576 (793)
Q Consensus 497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 576 (793)
+|.++ .+|.. ..+|++|+|++|+++ .+|.. ..+|+.|++++|+++ .+|...
T Consensus 331 ~N~L~-~LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l~------------------- 381 (788)
T PRK15387 331 NNQLT-SLPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPALP------------------- 381 (788)
T ss_pred cCccc-ccccc----ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCcccc-------------------
Confidence 88876 56642 246788888888887 35532 346777788888776 344321
Q ss_pred cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCC
Q 003813 577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE 656 (793)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 656 (793)
..|+.|++++|+|++ +|.. .++|+.|++++|+++ .+|... .+|+
T Consensus 382 ----------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~ 425 (788)
T PRK15387 382 ----------------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLL 425 (788)
T ss_pred ----------------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhh
Confidence 235788999999884 5643 357889999999998 577643 4678
Q ss_pred EEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813 657 SLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 657 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
.|++++|+++ .+|..+.+++.|+.|++++|+|+|.+|..
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 8999999998 68888899999999999999999887753
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.8e-21 Score=215.56 Aligned_cols=185 Identities=26% Similarity=0.369 Sum_probs=111.4
Q ss_pred CccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCC
Q 003813 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG 496 (793)
Q Consensus 417 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 496 (793)
+|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|+|+
T Consensus 283 ~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecC
Confidence 34455555555542 2321 2456666666666653 2321 1345556666666653 3321 2356666666
Q ss_pred CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813 497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF 576 (793)
Q Consensus 497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 576 (793)
+|+++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|++++ +|...
T Consensus 351 ~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l~------------------- 401 (788)
T PRK15387 351 DNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVLP------------------- 401 (788)
T ss_pred CCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCcc-------------------
Confidence 66666 45532 245666677777766 34532 2457777777777763 44211
Q ss_pred cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCC
Q 003813 577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE 656 (793)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 656 (793)
+.|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|+.+.++++|+
T Consensus 402 ----------------------------s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~ 448 (788)
T PRK15387 402 ----------------------------SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSET 448 (788)
T ss_pred ----------------------------cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence 12466778888777 35643 245777888888888 7888888888888
Q ss_pred EEECCCCcCCCCCcccccC
Q 003813 657 SLDFSANQLSGYIPQSMSN 675 (793)
Q Consensus 657 ~L~Ls~N~l~~~~p~~l~~ 675 (793)
.|+|++|++++.+|..+..
T Consensus 449 ~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 449 TVNLEGNPLSERTLQALRE 467 (788)
T ss_pred eEECCCCCCCchHHHHHHH
Confidence 8888888888887777643
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.9e-19 Score=201.07 Aligned_cols=205 Identities=25% Similarity=0.404 Sum_probs=126.5
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 495 (793)
++|+.|++++|+++ .+|..+. ++|+.|+|++|+++ .+|..+. .+|+.|++++|+++. +|..+. ++|+.|++
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEEC
Confidence 45677777777666 3444432 35677777777766 4555443 467777777777763 444432 46777777
Q ss_pred CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI 575 (793)
Q Consensus 496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 575 (793)
++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.+++ +|..+
T Consensus 291 s~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l------------------ 344 (754)
T PRK15370 291 YDNSIR-TLPAHLP---SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASL------------------ 344 (754)
T ss_pred CCCccc-cCcccch---hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhh------------------
Confidence 777776 4554432 35667777777776 3444332 567777777777653 44322
Q ss_pred ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCC
Q 003813 576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI 655 (793)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 655 (793)
.+.|+.|++++|+|+ .+|..+. ++|++|+|++|+++ .+|..+. ..|
T Consensus 345 ----------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL 390 (754)
T PRK15370 345 ----------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AAL 390 (754)
T ss_pred ----------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHH
Confidence 123567777777776 4565543 57777788777777 5666554 357
Q ss_pred CEEECCCCcCCCCCccc----ccCCCCCCeEEcccCccc
Q 003813 656 ESLDFSANQLSGYIPQS----MSNLSFLNYLNLSNNNLN 690 (793)
Q Consensus 656 ~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~ 690 (793)
+.|++++|+++ .+|.. +..++.+..+++.+|+++
T Consensus 391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77777877777 44443 333466777788888776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=5.3e-19 Score=198.99 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=6.5
Q ss_pred cCCceeeccCCccc
Q 003813 629 QGLQSLNFSYNLFT 642 (793)
Q Consensus 629 ~~L~~L~Ls~N~l~ 642 (793)
+.+..|++.+|.++
T Consensus 415 ~~l~~L~L~~Npls 428 (754)
T PRK15370 415 PQPTRIIVEYNPFS 428 (754)
T ss_pred CCccEEEeeCCCcc
Confidence 34444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2e-19 Score=189.30 Aligned_cols=215 Identities=21% Similarity=0.246 Sum_probs=110.5
Q ss_pred CccCCCCCCEEEccCCcccccCCCCCCCCCC---ccEEEccCCcccc----ccCccccCC-CCCCEEeCCCCcccccCch
Q 003813 435 CWMNWPRLRMLNLRNNNFTGSLPMSIGTLSS---LMSLNLRNNRLSG----IIPTSFNNF-TILEALDMGENELVGNIPT 506 (793)
Q Consensus 435 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~N~l~~~~p~ 506 (793)
.+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 3444555666666655554333333333333 6666666665552 122233344 5666666666665532211
Q ss_pred hH---HhhcccCcEEEccCcccccc----CCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc
Q 003813 507 WM---GERFSRLIILNLRSNKFHGD----FPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS 579 (793)
Q Consensus 507 ~~---~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~ 579 (793)
.+ +..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.....+.
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~--------------------- 214 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA--------------------- 214 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH---------------------
Confidence 11 11344566666666666531 222344445666666666665422111110
Q ss_pred CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccc-----cccCCceeeccCCccc----ccCCcccc
Q 003813 580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVT-----NLQGLQSLNFSYNLFT----GRIPDNIG 650 (793)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~----~~~p~~l~ 650 (793)
.....++.|+.|++++|.+++.....+. ..+.|++|++++|.++ ..+.+.+.
T Consensus 215 -------------------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 275 (319)
T cd00116 215 -------------------ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA 275 (319)
T ss_pred -------------------HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence 0111233456666666666542222222 1367777777777775 22334555
Q ss_pred CcCCCCEEECCCCcCCCC----CcccccCC-CCCCeEEcccCcc
Q 003813 651 VMRSIESLDFSANQLSGY----IPQSMSNL-SFLNYLNLSNNNL 689 (793)
Q Consensus 651 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 689 (793)
.+++|+.+++++|.++.. ....+... +.|+++|+.+|++
T Consensus 276 ~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 276 EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 567777777777777744 33344444 5677777777764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.9e-18 Score=180.53 Aligned_cols=156 Identities=28% Similarity=0.289 Sum_probs=79.7
Q ss_pred EEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCC--CchhHhhCCCCCccEEEccCCCCCCCC------CccCCCC
Q 003813 14 YLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKA--SDSLLVINSLPSLKELKLSFCKLHHFP------PLSSANF 85 (793)
Q Consensus 14 ~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l 85 (793)
.|+|..+.++. .+....+..+.+|++|+++++.++.. ......+...+++++|+++++.+...+ +..+..+
T Consensus 2 ~l~L~~~~l~~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKT-ERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccc-cchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 35666555531 11223355666677777777776542 112334456666777777776665311 1234455
Q ss_pred CCCCEEECcCccCCCcccccccCCCC---CCEEeCcCCcCccC----CcccccCC-CCCCEEEccCCccccccCh---hh
Q 003813 86 SSLTTLDLSENEFQGQIPSRLGNLTS---LKYLDLSFNQFNSV----VPGWLSKL-NDLEFLSLQSNRLQGNISS---LG 154 (793)
Q Consensus 86 ~~L~~L~Ls~n~i~~~~~~~~~~l~~---L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~i~~---~~ 154 (793)
++|+.|++++|.+.+..+..+..+.+ |++|++++|++.+. +...+..+ ++|++|++++|.+++.... ..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 66666666666665444444444433 66666666655421 12223344 5566666666655521110 11
Q ss_pred hcCCCCCcEEEcCCCC
Q 003813 155 LENLTSIQTLLLSGND 170 (793)
Q Consensus 155 ~~~l~~L~~L~L~~n~ 170 (793)
+..+++|++|++++|.
T Consensus 161 ~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 161 LRANRDLKELNLANNG 176 (319)
T ss_pred HHhCCCcCEEECcCCC
Confidence 3444455555555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3.2e-19 Score=154.11 Aligned_cols=181 Identities=26% Similarity=0.529 Sum_probs=118.4
Q ss_pred CCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEE
Q 003813 463 LSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQIL 542 (793)
Q Consensus 463 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 542 (793)
+...+.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|..+. ++++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 344445555555555 33344455555555555555554 5555555 4666666666666666 667777777777777
Q ss_pred EcccCcccc-ccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeC
Q 003813 543 DVAYNNLSG-TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEV 621 (793)
Q Consensus 543 ~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 621 (793)
||.+|++.. .+|..|..++. |+.|+|++|.+. .+
T Consensus 108 dltynnl~e~~lpgnff~m~t--------------------------------------------lralyl~dndfe-~l 142 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTT--------------------------------------------LRALYLGDNDFE-IL 142 (264)
T ss_pred hccccccccccCCcchhHHHH--------------------------------------------HHHHHhcCCCcc-cC
Confidence 777777653 34544433333 355677777776 77
Q ss_pred ccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCC---CCeEEcccCcccccCC
Q 003813 622 PVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSF---LNYLNLSNNNLNGEIP 694 (793)
Q Consensus 622 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~ls~N~l~g~ip 694 (793)
|..++++++|+.|.+..|.+- ..|.+++.++.|+.|++.+|+++ .+|+.++++.- =+.+-+.+|++--+|-
T Consensus 143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 888888888888888888888 78888888888888888888888 66666665532 2345566777765554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5.7e-19 Score=152.58 Aligned_cols=184 Identities=30% Similarity=0.458 Sum_probs=109.1
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
+..++.|.|++|+++ .+|..+..+.+|+.|++++|+++ ..|..+..+++|+.|+++-|++. +.|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 345555556666665 44445555566666666666665 45555555666666666655555 4555555556666666
Q ss_pred CCCCcccc-cCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813 495 MGENELVG-NIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN 573 (793)
Q Consensus 495 L~~N~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 573 (793)
+.+|.+.. .+|..+| .++.|+.|+|++|.+. .+|..++++++|+.|.+..|
T Consensus 109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn-------------------------- 160 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN-------------------------- 160 (264)
T ss_pred ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC--------------------------
Confidence 55555542 2344444 3445555555555554 44445555555555544444
Q ss_pred ccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcC
Q 003813 574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMR 653 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 653 (793)
.+. ..|.+++.++.|++|.+.+|+++ .+|.+++++.
T Consensus 161 ------------------------------------------dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 161 ------------------------------------------DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred ------------------------------------------chh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 444 67888888999999999999999 7777777653
Q ss_pred C---CCEEECCCCcCCCCCcccc
Q 003813 654 S---IESLDFSANQLSGYIPQSM 673 (793)
Q Consensus 654 ~---L~~L~Ls~N~l~~~~p~~l 673 (793)
- =+.+.+.+|.....|.+.|
T Consensus 197 l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 197 LVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred hhhhHHHHhhhhCCCCChHHHHH
Confidence 2 2456666777665554443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=5.2e-15 Score=166.71 Aligned_cols=116 Identities=36% Similarity=0.679 Sum_probs=102.3
Q ss_pred ceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcc
Q 003813 606 LVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLS 685 (793)
Q Consensus 606 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 685 (793)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|++||++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCc--cCCcCCccccCC-CccCCCC-CCCC
Q 003813 686 NNNLNGEIPSSTQ--LQSFGGSSFADN-DLCGAPL-PNCT 721 (793)
Q Consensus 686 ~N~l~g~ip~~~~--~~~~~~~~~~~n-~l~~~~~-~~c~ 721 (793)
+|+++|.+|.... +.......+.+| .+|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997622 222334567888 8998653 3563
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=1.5e-14 Score=148.66 Aligned_cols=196 Identities=26% Similarity=0.472 Sum_probs=152.7
Q ss_pred CCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcE
Q 003813 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLII 517 (793)
Q Consensus 438 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~ 517 (793)
.+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|.++.++..|+++|++.|+++ .+|..++ .++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-cee
Confidence 3445567888889888 78888888888888889988888 67888888999999999999988 8888887 454 889
Q ss_pred EEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccch
Q 003813 518 LNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFL 597 (793)
Q Consensus 518 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (793)
|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl---------------------------------- 191 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL---------------------------------- 191 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------------------------
Confidence 999999988 77888888888888999888886 566666665554
Q ss_pred hhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccccc---
Q 003813 598 VEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS--- 674 (793)
Q Consensus 598 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--- 674 (793)
+.|.+..|++. ..|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|.+. ..|..+.
T Consensus 192 ----------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kG 257 (722)
T KOG0532|consen 192 ----------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKG 257 (722)
T ss_pred ----------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcc
Confidence 55666777776 567777744 4788888888888 88888888888888888888887 5555442
Q ss_pred CCCCCCeEEcccCc
Q 003813 675 NLSFLNYLNLSNNN 688 (793)
Q Consensus 675 ~l~~L~~L~ls~N~ 688 (793)
...-.++|+..-++
T Consensus 258 kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 258 KVHIFKYLSTQACQ 271 (722)
T ss_pred ceeeeeeecchhcc
Confidence 33446777777664
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=1.2e-14 Score=149.41 Aligned_cols=195 Identities=29% Similarity=0.439 Sum_probs=161.9
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
+..-...|++.|++. .+|..++.+..|+.+.|.+|.+. .+|.++.++..|+++||+.|+++ ..|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344567788888888 67888888888999999999998 78888999999999999999998 6777777776 89999
Q ss_pred CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCc
Q 003813 495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSND 574 (793)
Q Consensus 495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 574 (793)
+++|+++ .+|..++ ....|..||.+.|.+. .+|..++.+.+|+.|.++.|++. .+|..+..|+
T Consensus 150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------- 212 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------- 212 (722)
T ss_pred EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence 9999997 8999888 7889999999999998 78888999999999999999987 5565544332
Q ss_pred cccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccC---
Q 003813 575 IFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGV--- 651 (793)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--- 651 (793)
|..||+|+|+++ .+|.+|.+|+.|++|-|.+|.++ ..|..+..
T Consensus 213 --------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk 258 (722)
T KOG0532|consen 213 --------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK 258 (722)
T ss_pred --------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence 478999999999 89999999999999999999999 77765543
Q ss_pred cCCCCEEECCCCc
Q 003813 652 MRSIESLDFSANQ 664 (793)
Q Consensus 652 l~~L~~L~Ls~N~ 664 (793)
.---++|+..-++
T Consensus 259 VHIFKyL~~qA~q 271 (722)
T KOG0532|consen 259 VHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeeecchhcc
Confidence 2334667777664
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=4.1e-12 Score=137.49 Aligned_cols=123 Identities=32% Similarity=0.541 Sum_probs=71.2
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCC-CccEEEccCCccccccCccccCCCCCCEEeCCCC
Q 003813 420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS-SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498 (793)
Q Consensus 420 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 498 (793)
.+++..|.+...+ ......+.++.|++.+|.++ .++....... +|+.|++++|++.. +|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 4666666653222 22333456677777777776 3444444443 67777777777663 3345566667777777777
Q ss_pred cccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCc
Q 003813 499 ELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN 548 (793)
Q Consensus 499 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 548 (793)
+++ .+|.... ..+.|+.|++++|++. .+|.....+..|+++.+++|+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 666 5555443 3566666666666666 455444444456666666664
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=5.4e-12 Score=136.61 Aligned_cols=199 Identities=30% Similarity=0.497 Sum_probs=127.8
Q ss_pred CEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCC-CCCEEeCCCCcccccCchhHHhhcccCcEEEcc
Q 003813 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFT-ILEALDMGENELVGNIPTWMGERFSRLIILNLR 521 (793)
Q Consensus 443 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~ 521 (793)
..++++.|.+... ...+...+.++.|++.+|.++. ++......+ +|+.|++++|.+. .+|..+. .+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence 3567777766422 2233445667777777777774 344444453 7777777777776 6655555 57777777777
Q ss_pred CccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813 522 SNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK 601 (793)
Q Consensus 522 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (793)
+|++. .+|...+.++.|+.|++++|++. .+|..+...
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~----------------------------------------- 208 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL----------------------------------------- 208 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhh-----------------------------------------
Confidence 77777 45555446777777777777776 444432221
Q ss_pred hhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCe
Q 003813 602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNY 681 (793)
Q Consensus 602 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 681 (793)
..|+++++++|.+. .++..+.+++.+..|.+++|++. ..+..++.+++++.|++++|+++.. +. +..+.+++.
T Consensus 209 ---~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~ 281 (394)
T COG4886 209 ---SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRE 281 (394)
T ss_pred ---hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCE
Confidence 22356667777544 45556677777777777777776 4466677777777777777777733 33 677777777
Q ss_pred EEcccCcccccCCC
Q 003813 682 LNLSNNNLNGEIPS 695 (793)
Q Consensus 682 L~ls~N~l~g~ip~ 695 (793)
||+++|.++...|.
T Consensus 282 L~~s~n~~~~~~~~ 295 (394)
T COG4886 282 LDLSGNSLSNALPL 295 (394)
T ss_pred EeccCccccccchh
Confidence 77777777766554
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=1.1e-11 Score=139.81 Aligned_cols=114 Identities=28% Similarity=0.535 Sum_probs=100.3
Q ss_pred CcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcc
Q 003813 538 SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNF 617 (793)
Q Consensus 538 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 617 (793)
.++.|+|++|.+.|.+|..+.+++.| +.|+|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L--------------------------------------------~~L~Ls~N~l 454 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHL--------------------------------------------QSINLSGNSI 454 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCC--------------------------------------------CEEECCCCcc
Confidence 37788888888888888877766655 7889999999
Q ss_pred eeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCC-CCCCeEEcccCcccccCCC
Q 003813 618 SGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNL-SFLNYLNLSNNNLNGEIPS 695 (793)
Q Consensus 618 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~ 695 (793)
+|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ ..+..+++++|+..|.+|.
T Consensus 455 ~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999988764 4678999999998776663
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=8.3e-12 Score=114.59 Aligned_cols=130 Identities=26% Similarity=0.291 Sum_probs=47.4
Q ss_pred cCCCCcccEEEcCCccCCCCCchhHhhC-CCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccc-cCC
Q 003813 32 LSGLSLLKHLYISSVNLSKASDSLLVIN-SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRL-GNL 109 (793)
Q Consensus 32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l 109 (793)
+.+...+++|+|++|.|+.++. ++ .+.+|+.|++++|.|+.+. .+..+++|++|++++|.|+.. ...+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~----L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIEN----LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNL 87 (175)
T ss_dssp ---------------------S------TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-
T ss_pred cccccccccccccccccccccc----hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhC
Confidence 4556678888888888887643 33 4678888888888888876 477788888888888888843 3334 357
Q ss_pred CCCCEEeCcCCcCccCC-cccccCCCCCCEEEccCCcccccc--ChhhhcCCCCCcEEEcCC
Q 003813 110 TSLKYLDLSFNQFNSVV-PGWLSKLNDLEFLSLQSNRLQGNI--SSLGLENLTSIQTLLLSG 168 (793)
Q Consensus 110 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~i--~~~~~~~l~~L~~L~L~~ 168 (793)
++|++|++++|+|.... -..+..+++|++|++.+|+++..- ....+..+|+|+.||-..
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 88888888888886632 244567888888888888876321 122356777777776543
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=2e-12 Score=125.83 Aligned_cols=142 Identities=21% Similarity=0.285 Sum_probs=65.7
Q ss_pred CCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCccccc----CCCCccCCCCCCEEEccCCcccccCCCCCCCC
Q 003813 388 NLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE----IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTL 463 (793)
Q Consensus 388 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 463 (793)
..++++....|++.......+...++..+.|+.+.++.|.|... ....|..|++|++|||.+|-++..-..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~----- 231 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV----- 231 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-----
Confidence 34455555555554444334444444455555555555544311 122344455555555555544411100
Q ss_pred CCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCch----hHHhhcccCcEEEccCcccccc----CCccccC
Q 003813 464 SSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPT----WMGERFSRLIILNLRSNKFHGD----FPIQLCR 535 (793)
Q Consensus 464 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~ 535 (793)
.+...+..+++|+.|++++|.+...-.. .+....++|++|.+.+|.++.. +...+..
T Consensus 232 ---------------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 232 ---------------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred ---------------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 1112333344455555555544322211 1222345566666666665421 1223444
Q ss_pred CCCcCEEEcccCcc
Q 003813 536 LASLQILDVAYNNL 549 (793)
Q Consensus 536 l~~L~~L~Ls~N~l 549 (793)
.+.|..|+|++|++
T Consensus 297 k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRL 310 (382)
T ss_pred chhhHHhcCCcccc
Confidence 66777777777777
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.1e-12 Score=125.84 Aligned_cols=219 Identities=21% Similarity=0.211 Sum_probs=109.2
Q ss_pred CCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCcc-CCCC
Q 003813 7 GNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLS-SANF 85 (793)
Q Consensus 7 ~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l 85 (793)
.+++.|+...|.++.+...+.. +....|++++.|||+.|-+............+|+|+.|+++.|++.....+. -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3455566666665554332221 2244566666666666666655444444456666666666666654433211 1234
Q ss_pred CCCCEEECcCccCCCcc-cccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccC-hhhhcCCCCCcE
Q 003813 86 SSLTTLDLSENEFQGQI-PSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNIS-SLGLENLTSIQT 163 (793)
Q Consensus 86 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~-~~~~~~l~~L~~ 163 (793)
++|+.|.|++|.++... -.....+|+|+.|+|.+|...........-+..|++|||++|++. ..+ ....+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 56666666666655221 122344556666666666422222222334555666666666554 222 111445555555
Q ss_pred EEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccc-cccccCCCCCCCEE
Q 003813 164 LLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGH-MTNQLGRFKGLNFL 242 (793)
Q Consensus 164 L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L 242 (793)
|+++.+..-+-..|+. ..-..... +++|++|++..|++... .-..+..+++|+.|
T Consensus 276 Lnls~tgi~si~~~d~-------------------~s~~kt~~-----f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDV-------------------ESLDKTHT-----FPKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred hhccccCcchhcCCCc-------------------cchhhhcc-----cccceeeecccCccccccccchhhccchhhhh
Confidence 5555554111111111 00000112 27788888888877321 11234556777777
Q ss_pred eCcCCcCCC
Q 003813 243 DLSNTTMDG 251 (793)
Q Consensus 243 ~L~~n~l~~ 251 (793)
.+..|.++.
T Consensus 332 ~~~~n~ln~ 340 (505)
T KOG3207|consen 332 RITLNYLNK 340 (505)
T ss_pred hcccccccc
Confidence 777777763
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2e-11 Score=112.11 Aligned_cols=109 Identities=30% Similarity=0.363 Sum_probs=37.8
Q ss_pred hCCCCCccEEEccCCCCCCCCCccCC-CCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCC
Q 003813 58 INSLPSLKELKLSFCKLHHFPPLSSA-NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDL 136 (793)
Q Consensus 58 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 136 (793)
+.+..++++|+|++|.|+.+.. ++ .+.+|+.||+++|.|+.. +.+..+++|++|++++|+++.+.+.....+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3456678999999999888763 44 578899999999998854 357788899999999999887533222468889
Q ss_pred CEEEccCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813 137 EFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170 (793)
Q Consensus 137 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 170 (793)
++|++++|++...-.-..++.+++|++|++.+|+
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 9999999988732222346778888888888887
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=1.8e-11 Score=116.16 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=90.9
Q ss_pred cCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhh
Q 003813 514 RLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVM 593 (793)
Q Consensus 514 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (793)
.|+++||++|.|+ .+.+++.-.+.++.|++|+|.+.. +.++..
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nLa~------------------------------- 327 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNLAE------------------------------- 327 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhhhh-------------------------------
Confidence 3667777777776 455666667777777777777652 111111
Q ss_pred ccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCC-ccc
Q 003813 594 KGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYI-PQS 672 (793)
Q Consensus 594 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~ 672 (793)
+++|+.||||+|.++ .+...=..+-+.+.|.|+.|.+. .-..++.+-+|..||+++|++.... -..
T Consensus 328 ----------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 328 ----------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNH 394 (490)
T ss_pred ----------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcc
Confidence 334567777777776 33333455677888899999887 2345788888999999999887543 356
Q ss_pred ccCCCCCCeEEcccCcccccCC
Q 003813 673 MSNLSFLNYLNLSNNNLNGEIP 694 (793)
Q Consensus 673 l~~l~~L~~L~ls~N~l~g~ip 694 (793)
++++|-|+.+-+.+|++.+...
T Consensus 395 IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred cccccHHHHHhhcCCCccccch
Confidence 8889999999999999987643
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.8e-11 Score=122.60 Aligned_cols=211 Identities=27% Similarity=0.309 Sum_probs=108.6
Q ss_pred CCCCccEEEccCCCCCCCCC-ccCCCCCCCCEEECcCccCCCccc--ccccCCCCCCEEeCcCCcCccCCcccc-cCCCC
Q 003813 60 SLPSLKELKLSFCKLHHFPP-LSSANFSSLTTLDLSENEFQGQIP--SRLGNLTSLKYLDLSFNQFNSVVPGWL-SKLND 135 (793)
Q Consensus 60 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 135 (793)
++.+|++..|.++.+...+. .....|++++.||||.|-+....+ .-...+|+|+.|+++.|++........ ..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45556666666665544432 234455666666666665553221 223455666666666665543222111 23455
Q ss_pred CCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCc
Q 003813 136 LEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANEL 215 (793)
Q Consensus 136 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L 215 (793)
|+.|.++.|.++..--......+|+|+.|++..|. ...........+ ..|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-------------------------~~~~~~~~~~i~-----~~L 248 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-------------------------IILIKATSTKIL-----QTL 248 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-------------------------ccceecchhhhh-----hHH
Confidence 55555555555421111113345555555555552 111011111111 567
Q ss_pred cEEEccCccccccc-ccccCCCCCCCEEeCcCCcCCCCc-chh-----hcCCCCCCEEEccCCCCccccChhhhhcCCCC
Q 003813 216 ESLDLGSCQIFGHM-TNQLGRFKGLNFLDLSNTTMDGSI-PLS-----LGQIANLEYLDLSKNELNGTVSEIHFVNLTKL 288 (793)
Q Consensus 216 ~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 288 (793)
++|||++|++.... -...+.++.|+.|+++.+.+...- |+. ...+++|++|++..|++...-.-..+..+++|
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL 328 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence 77777777764322 133567777888888877776432 221 23457788888888877533222345556666
Q ss_pred cEEECCCCeeee
Q 003813 289 VTFRANGNSLIF 300 (793)
Q Consensus 289 ~~L~l~~n~l~~ 300 (793)
+.|.+..|.+..
T Consensus 329 k~l~~~~n~ln~ 340 (505)
T KOG3207|consen 329 KHLRITLNYLNK 340 (505)
T ss_pred hhhhcccccccc
Confidence 666666666543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=1.8e-11 Score=116.23 Aligned_cols=181 Identities=25% Similarity=0.323 Sum_probs=112.6
Q ss_pred CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCC-----------------------ccCCCCCCCC
Q 003813 33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPP-----------------------LSSANFSSLT 89 (793)
Q Consensus 33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L~ 89 (793)
.-+++|+.+.++.+.-..+.+. ...-|.|+++...+..++..+. ..+.....|+
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~---~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDI---ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred HHhhhhheeeeeccchhheece---eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 4456666676666654443221 1123566666666655443221 0112234677
Q ss_pred EEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCC
Q 003813 90 TLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGN 169 (793)
Q Consensus 90 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n 169 (793)
++|||+|.|+ .+.++..-.|.++.|++|+|++..+ +.+..+++|++|||++|.++ .+... -.++-+.++|.+++|
T Consensus 288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNIKTLKLAQN 362 (490)
T ss_pred hccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhh-HhhhcCEeeeehhhh
Confidence 7888888777 5566677777888888888887764 33677788888888888776 44443 456667777888777
Q ss_pred CCCCCCCcccccCCCCCcEEEccCCcccc-cchhHHhhhccccCCCccEEEccCccccccc
Q 003813 170 DELGGKIPTSFGRFCKLKSFSTGFTNLSQ-DISEILGIFSACVANELESLDLGSCQIFGHM 229 (793)
Q Consensus 170 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 229 (793)
. + .-...++++-+|..|++..|++.. +-...++.+ +.|+.+.+.+|.+.+..
T Consensus 363 ~-i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-----PCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 363 K-I--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-----PCLETLRLTGNPLAGSV 415 (490)
T ss_pred h-H--hhhhhhHhhhhheeccccccchhhHHHhcccccc-----cHHHHHhhcCCCccccc
Confidence 4 2 122345666677778888777754 223345555 77888888888875543
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=8.3e-11 Score=114.70 Aligned_cols=241 Identities=20% Similarity=0.221 Sum_probs=118.0
Q ss_pred cCCCCcccEEEcCCccCCCC--CchhHhhCCCCCccEEEccCCCCC----CCCC------ccCCCCCCCCEEECcCccCC
Q 003813 32 LSGLSLLKHLYISSVNLSKA--SDSLLVINSLPSLKELKLSFCKLH----HFPP------LSSANFSSLTTLDLSENEFQ 99 (793)
Q Consensus 32 l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~------~~~~~l~~L~~L~Ls~n~i~ 99 (793)
+..+..++.++|++|.+..- ......+.+.++|+..++|+---. .+++ .++..+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34556666666666666542 112234455566666666653111 1111 13445566777777777665
Q ss_pred Cccccc----ccCCCCCCEEeCcCCcCccCCcc-------------cccCCCCCCEEEccCCccccccCh----hhhcCC
Q 003813 100 GQIPSR----LGNLTSLKYLDLSFNQFNSVVPG-------------WLSKLNDLEFLSLQSNRLQGNISS----LGLENL 158 (793)
Q Consensus 100 ~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~i~~----~~~~~l 158 (793)
...+.. +..+..|++|.|.+|.+.-.--. ..+.-+.|+++...+|++. .-+. ..|...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhc
Confidence 433333 24456666666666655322111 1223456666666666654 2221 224555
Q ss_pred CCCcEEEcCCCCCCCCC---CcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCC
Q 003813 159 TSIQTLLLSGNDELGGK---IPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGR 235 (793)
Q Consensus 159 ~~L~~L~L~~n~~~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 235 (793)
+.|+.+.+..|.+-... +...+..+++|+.|++..|-++..-... +...+..
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~-------------------------LakaL~s 239 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA-------------------------LAKALSS 239 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-------------------------HHHHhcc
Confidence 66666666666521111 1223444444444444444443322222 2233444
Q ss_pred CCCCCEEeCcCCcCCCCcchhhc-----CCCCCCEEEccCCCCcccc---ChhhhhcCCCCcEEECCCCee
Q 003813 236 FKGLNFLDLSNTTMDGSIPLSLG-----QIANLEYLDLSKNELNGTV---SEIHFVNLTKLVTFRANGNSL 298 (793)
Q Consensus 236 l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l 298 (793)
+++|++|++++|.+......+|. ..++|+.|.+.+|.++... -.......+.|..|++++|.+
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 55555555555555443333321 2456666666666654211 112344466666677777666
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=6.7e-10 Score=128.01 Aligned_cols=154 Identities=23% Similarity=0.327 Sum_probs=114.7
Q ss_pred CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCC--CCCCCCccCCCCCCCCEEECcCccCCCcccccccCCC
Q 003813 33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCK--LHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLT 110 (793)
Q Consensus 33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 110 (793)
......+...+.+|.+..++.. ..++.|++|-+..|. +..++...|..++.|++|||++|.--+.+|..++.+-
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cchhheeEEEEeccchhhccCC----CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 3456778888888888776442 356688898888886 6777766788899999999998877678899999999
Q ss_pred CCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCC-CCCCCCcccccCCCCCcEE
Q 003813 111 SLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND-ELGGKIPTSFGRFCKLKSF 189 (793)
Q Consensus 111 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L 189 (793)
+||+|++++..+.. +|..++++..|.+|++..+.....++.. ...+++|++|.+..-. .........+.++..|+.+
T Consensus 596 ~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 596 HLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhcccccCCCccc-cchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 99999999998875 7888999999999999888765444433 6668999999887653 1223334445556666665
Q ss_pred Ecc
Q 003813 190 STG 192 (793)
Q Consensus 190 ~l~ 192 (793)
...
T Consensus 674 s~~ 676 (889)
T KOG4658|consen 674 SIT 676 (889)
T ss_pred eee
Confidence 553
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=7.8e-10 Score=83.34 Aligned_cols=59 Identities=44% Similarity=0.649 Sum_probs=28.8
Q ss_pred CCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCc
Q 003813 630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNN 688 (793)
Q Consensus 630 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 688 (793)
+|++|++++|+++...++.|.++++|++|++++|+++...|.+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555543333444455555555555555544444445555555555555544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.6e-09 Score=81.61 Aligned_cols=61 Identities=30% Similarity=0.452 Sum_probs=57.0
Q ss_pred cceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcC
Q 003813 605 NLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQL 665 (793)
Q Consensus 605 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 665 (793)
+.|+.|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4579999999999987778999999999999999999988889999999999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=2.5e-10 Score=123.56 Aligned_cols=128 Identities=32% Similarity=0.374 Sum_probs=84.3
Q ss_pred CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCC
Q 003813 33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL 112 (793)
Q Consensus 33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 112 (793)
..+..++.+++..|.+.... ..+..+.+|+.|++.+|+|..+.. .+..+++|++|++++|.|+.. ..+..++.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~---~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L 142 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKIL---NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLL 142 (414)
T ss_pred HHhHhHHhhccchhhhhhhh---cccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccch
Confidence 34566666667777766621 124566777777777777777663 266677777777777777754 345566667
Q ss_pred CEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccCh-hhhcCCCCCcEEEcCCCC
Q 003813 113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS-LGLENLTSIQTLLLSGND 170 (793)
Q Consensus 113 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~ 170 (793)
+.|++++|.+... ..+..++.|+.+++++|.+. .+.. . ...+.+++.+.+.+|.
T Consensus 143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhheeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCc
Confidence 7777777777654 34555777777777777776 4444 1 3566777777777775
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=2.9e-10 Score=122.99 Aligned_cols=85 Identities=22% Similarity=0.226 Sum_probs=45.8
Q ss_pred eeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCC---Cccc-ccCCCCCCeE
Q 003813 607 VRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGY---IPQS-MSNLSFLNYL 682 (793)
Q Consensus 607 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L 682 (793)
|+.+++++|++. .++..+..+..+..|++++|++...- .+.....+..+.++.|.+... .+.. ....+.++.+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 456666666665 33345555666666666666665221 244455556666666655421 1111 3445556666
Q ss_pred EcccCcccccCC
Q 003813 683 NLSNNNLNGEIP 694 (793)
Q Consensus 683 ~ls~N~l~g~ip 694 (793)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 666666655444
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=8.4e-09 Score=119.07 Aligned_cols=270 Identities=24% Similarity=0.251 Sum_probs=158.5
Q ss_pred CCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCcc--CCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCC
Q 003813 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVN--LSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFS 86 (793)
Q Consensus 9 l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 86 (793)
....+.+.+-+|.+..+++. ...+.|++|-+..|. +..++ ...|..+|.|++|||++|.-..-.|..++.+-
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred hhheeEEEEeccchhhccCC----CCCCccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 35567777777776555554 345679999988886 45542 23467899999999998854344445889999
Q ss_pred CCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCcEEE
Q 003813 87 SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLL 165 (793)
Q Consensus 87 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~ 165 (793)
+||+|++++..+. .+|..+.+++.|.+|++..+.-...+|.....+++|++|.+..-.... ......+.++.+|+.+.
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 9999999999999 789999999999999999888766667777789999999987654221 11122245566666665
Q ss_pred cCCCCCCCCCCcccccCCCCCc----EEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCC------
Q 003813 166 LSGNDELGGKIPTSFGRFCKLK----SFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGR------ 235 (793)
Q Consensus 166 L~~n~~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~------ 235 (793)
..... ..+...+..+..|. .+.+..+... ..+..+..+ .+|+.|.+.++.+..........
T Consensus 675 ~~~~s---~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l-----~~L~~L~i~~~~~~e~~~~~~~~~~~~~~ 745 (889)
T KOG4658|consen 675 ITISS---VLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSL-----GNLEELSILDCGISEIVIEWEESLIVLLC 745 (889)
T ss_pred eecch---hHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccc-----cCcceEEEEcCCCchhhcccccccchhhh
Confidence 54432 11111222222222 1111111111 112222223 77888888888765433322211
Q ss_pred CCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCC
Q 003813 236 FKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296 (793)
Q Consensus 236 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 296 (793)
++++..+...++... ..+.+....++|+.|.+..+.....+.. ....+..+..+.+..+
T Consensus 746 f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 746 FPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLELKELILPFN 804 (889)
T ss_pred HHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCC-HHHHhhhcccEEeccc
Confidence 223333333333322 2233344457788888877765543332 3344444444333333
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=2.8e-08 Score=94.91 Aligned_cols=114 Identities=24% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCC
Q 003813 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSL 88 (793)
Q Consensus 9 l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 88 (793)
...++.|-+.++.|....+...+-...+.++.+||.+|.|++..++...+.++|.|++|+++.|.+.......-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 33444555666665444333322346778888888888888876666666788888888888887765443222456678
Q ss_pred CEEECcCccCCCc-ccccccCCCCCCEEeCcCCcC
Q 003813 89 TTLDLSENEFQGQ-IPSRLGNLTSLKYLDLSFNQF 122 (793)
Q Consensus 89 ~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l 122 (793)
++|-|.+..+.-. ....+..+|.+++|.+|.|.+
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 8888877766522 223456677777777777744
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=3e-09 Score=113.17 Aligned_cols=180 Identities=28% Similarity=0.320 Sum_probs=114.9
Q ss_pred CCCCCCCCCccEEEccCCccccccCccccCC-CCCCEEeCCCCccc----------ccCchhHHhhcccCcEEEccCccc
Q 003813 457 PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNF-TILEALDMGENELV----------GNIPTWMGERFSRLIILNLRSNKF 525 (793)
Q Consensus 457 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~----------~~~p~~~~~~l~~L~~L~L~~n~l 525 (793)
|-.+..+.+|++|.++++.+... ..+..+ ..|+.|- ..|.+. |.+.... -...|.+.+.+.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhH
Confidence 55666788999999999988741 122221 1233332 122211 1111111 012466777788887
Q ss_pred cccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhcc
Q 003813 526 HGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILN 605 (793)
Q Consensus 526 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (793)
. ....++.-++.|+.|+|++|+++.. .....++
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v----------------------------------------------~~Lr~l~ 209 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKV----------------------------------------------DNLRRLP 209 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhh----------------------------------------------HHHHhcc
Confidence 7 5556677778888888888887621 1222345
Q ss_pred ceeEEEcccCcceeeCcc-ccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCc-ccccCCCCCCeEE
Q 003813 606 LVRGIDISKNNFSGEVPV-EVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP-QSMSNLSFLNYLN 683 (793)
Q Consensus 606 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ 683 (793)
.|+.|||++|.+. .+|. ....++ |+.|++++|.++. . ..+.+|++|+.||+|+|-+++.-. .-+..|.+|+.|+
T Consensus 210 ~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 210 KLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred cccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 5678888888887 4443 333444 8899999999883 3 357889999999999998875432 2255677888999
Q ss_pred cccCccccc
Q 003813 684 LSNNNLNGE 692 (793)
Q Consensus 684 ls~N~l~g~ 692 (793)
|.+|++.|-
T Consensus 286 LeGNPl~c~ 294 (1096)
T KOG1859|consen 286 LEGNPLCCA 294 (1096)
T ss_pred hcCCccccC
Confidence 999998764
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=1.5e-09 Score=115.27 Aligned_cols=99 Identities=33% Similarity=0.418 Sum_probs=44.2
Q ss_pred ccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccC
Q 003813 64 LKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQS 143 (793)
Q Consensus 64 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 143 (793)
|.+.+.++|.+..... ++.-++.|+.|||++|+++.. +.+..|++|++|||++|.+..+.--....+. |+.|.+++
T Consensus 166 L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 3444444444444432 344444555555555555422 2444555555555555555442211122222 55555555
Q ss_pred CccccccChhhhcCCCCCcEEEcCCC
Q 003813 144 NRLQGNISSLGLENLTSIQTLLLSGN 169 (793)
Q Consensus 144 n~l~~~i~~~~~~~l~~L~~L~L~~n 169 (793)
|.++ .+.. +.++.+|+.||++.|
T Consensus 242 N~l~-tL~g--ie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 242 NALT-TLRG--IENLKSLYGLDLSYN 264 (1096)
T ss_pred cHHH-hhhh--HHhhhhhhccchhHh
Confidence 5444 2221 445555555555554
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.46 E-value=8.9e-09 Score=86.68 Aligned_cols=116 Identities=28% Similarity=0.410 Sum_probs=92.7
Q ss_pred CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813 35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY 114 (793)
Q Consensus 35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 114 (793)
-..+..++|++|++..+++.+..+.....|+..+|++|.+..+++..-...+.+++|+|++|.++ .+|..+..++.|+.
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 34567788888888777666666777778888888888888888755556678888899999888 67878888889999
Q ss_pred EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChh
Q 003813 115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSL 153 (793)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~ 153 (793)
|+++.|.+.. .|..+..+.++..|+..+|.+. .++.+
T Consensus 105 lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 105 LNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred cccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 9999888876 6777777888888888888877 77765
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=4.4e-09 Score=100.24 Aligned_cols=180 Identities=22% Similarity=0.255 Sum_probs=109.2
Q ss_pred CCCEEeCcCCcCccC-CcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCC-cccccCCCCCcE
Q 003813 111 SLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKI-PTSFGRFCKLKS 188 (793)
Q Consensus 111 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~ 188 (793)
.|++||||...++.. .-..+..+.+|+.|.+.++++...+... +++-.+|+.|+++.+..++... .--+.+|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 477777777665432 1233456777777777777777555554 7777777777777765443322 223567777888
Q ss_pred EEccCCcccccchhHHhhhccccCCCccEEEccCcccc---cccccccCCCCCCCEEeCcCCc-CCCCcchhhcCCCCCC
Q 003813 189 FSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF---GHMTNQLGRFKGLNFLDLSNTT-MDGSIPLSLGQIANLE 264 (793)
Q Consensus 189 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 264 (793)
|+++++.+..+....+ ..+.-++|+.|+++++.-. ..+..-...+++|.+|||++|. ++...-..|.+++.|+
T Consensus 265 LNlsWc~l~~~~Vtv~---V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVA---VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhhHH---HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 8888777665442211 1111267888898887421 1222223577888888888764 3434444566778888
Q ss_pred EEEccCCCCccccCh--hhhhcCCCCcEEECCCC
Q 003813 265 YLDLSKNELNGTVSE--IHFVNLTKLVTFRANGN 296 (793)
Q Consensus 265 ~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n 296 (793)
+|.++.|.. .+|. ..+...|.|.+|+..++
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 888888864 3333 13445566666665543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.43 E-value=7.7e-09 Score=87.05 Aligned_cols=86 Identities=24% Similarity=0.380 Sum_probs=47.7
Q ss_pred eEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccC
Q 003813 608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN 687 (793)
Q Consensus 608 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 687 (793)
+.+++++|.|+ .+|+++..++.|+.|+++.|.+. ..|..+..|.++-.||..+|.+. .+|..+-.-+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 55566666665 55666666666666666666666 55555555666666666666655 33332222222333344555
Q ss_pred cccccCCCC
Q 003813 688 NLNGEIPSS 696 (793)
Q Consensus 688 ~l~g~ip~~ 696 (793)
++.+.+|..
T Consensus 157 pl~~~~~~k 165 (177)
T KOG4579|consen 157 PLGDETKKK 165 (177)
T ss_pred cccccCccc
Confidence 666555544
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=3e-08 Score=93.44 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=18.3
Q ss_pred CCccEEEccCcccccccccc----cCCCCCCCEEeCcC
Q 003813 213 NELESLDLGSCQIFGHMTNQ----LGRFKGLNFLDLSN 246 (793)
Q Consensus 213 ~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~L~~ 246 (793)
..++.++||+|.|......+ +++-.+|+..+++.
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 56666777777664433322 33445555555554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2.6e-07 Score=88.38 Aligned_cols=190 Identities=21% Similarity=0.232 Sum_probs=93.7
Q ss_pred CCCCCEEECcCccCCCc--ccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCc
Q 003813 85 FSSLTTLDLSENEFQGQ--IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQ 162 (793)
Q Consensus 85 l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 162 (793)
++.++.+||.+|.|+.. +..-+.++|.|++|+++.|.+...+...=..+.+|++|-|.+..+.-.-....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45566666666665521 2222345666666666666655433221124556666666665543222222245566666
Q ss_pred EEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCccccc--ccccccCCCCCCC
Q 003813 163 TLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFG--HMTNQLGRFKGLN 240 (793)
Q Consensus 163 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~l~~L~ 240 (793)
+|.++.|+ ++.+++..+.....- +.++++....|.... ..-..-.-++++.
T Consensus 150 elHmS~N~---------------~rq~n~Dd~c~e~~s------------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 150 ELHMSDNS---------------LRQLNLDDNCIEDWS------------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred hhhhccch---------------hhhhccccccccccc------------hhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 66666663 222333322222111 122233332221100 0000011234556
Q ss_pred EEeCcCCcCCCC-cchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeee
Q 003813 241 FLDLSNTTMDGS-IPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFK 301 (793)
Q Consensus 241 ~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 301 (793)
.+-+..|.+... ....+..++.+.-|+|+.|++.....-..+.++++|..|.++++++...
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 666666655422 1223445566667778888776555555677788888888888877543
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=4.9e-07 Score=85.42 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=45.0
Q ss_pred CCCCcccEEEcCCccCCCC--CchhHhhCCCCCccEEEccCCCCCCCCC----------ccCCCCCCCCEEECcCccCCC
Q 003813 33 SGLSLLKHLYISSVNLSKA--SDSLLVINSLPSLKELKLSFCKLHHFPP----------LSSANFSSLTTLDLSENEFQG 100 (793)
Q Consensus 33 ~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~~~~l~~L~~L~Ls~n~i~~ 100 (793)
..+..++.++||+|.|.+- ......+.+-.+|+..+++.--....-. .++.+||+|+..+||.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3466777777777777653 1122334455666666666532211100 134455566666666665554
Q ss_pred ccccc----ccCCCCCCEEeCcCCcC
Q 003813 101 QIPSR----LGNLTSLKYLDLSFNQF 122 (793)
Q Consensus 101 ~~~~~----~~~l~~L~~L~Ls~n~l 122 (793)
..|.. ++.-+.|++|.+++|.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCC
Confidence 33322 23344555555555544
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8.7e-08 Score=91.64 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=104.3
Q ss_pred CCccEEEccCcccccc-cccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCC-CccccChhhhhcCCCCcE
Q 003813 213 NELESLDLGSCQIFGH-MTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE-LNGTVSEIHFVNLTKLVT 290 (793)
Q Consensus 213 ~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~ 290 (793)
+.|+++||+...|+.. .-.-+..|.+|+.|.+.++++.+.+...++.-.+|+.|+|+.+. ++.......+++++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4688888888777532 22335678889999999999998888888888999999998764 443334446788999999
Q ss_pred EECCCCeeeeecCCCCC--CcccccEEEccCccCC---CCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEE
Q 003813 291 FRANGNSLIFKINPNWV--PPFQLTGLGVRSCRLG---PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLN 365 (793)
Q Consensus 291 L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 365 (793)
|+++++.+......... --.+|+.|+++++.-. ..+......+++|.+||+++|..-.......+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999877654422221 1346777777776422 112222356788888888877543222222333456666666
Q ss_pred eeCcc
Q 003813 366 ISGNQ 370 (793)
Q Consensus 366 ls~n~ 370 (793)
+++|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 66654
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=8.4e-06 Score=74.12 Aligned_cols=126 Identities=25% Similarity=0.285 Sum_probs=74.1
Q ss_pred CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEE
Q 003813 12 LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTL 91 (793)
Q Consensus 12 L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 91 (793)
=+.+||++.++..+.. +. .-+.+...+||++|++..+.. +..++.|.+|.+.+|+|+.+.+..-..+++|..|
T Consensus 21 e~e~~LR~lkip~ien-lg--~~~d~~d~iDLtdNdl~~l~~----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LG--ATLDQFDAIDLTDNDLRKLDN----LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL 93 (233)
T ss_pred ccccccccccccchhh-cc--ccccccceecccccchhhccc----CCCccccceEEecCCcceeeccchhhhccccceE
Confidence 3566777766532222 10 124466677777777766543 4466777777777777777776444456677777
Q ss_pred ECcCccCCCcc-cccccCCCCCCEEeCcCCcCccCC---cccccCCCCCCEEEccCC
Q 003813 92 DLSENEFQGQI-PSRLGNLTSLKYLDLSFNQFNSVV---PGWLSKLNDLEFLSLQSN 144 (793)
Q Consensus 92 ~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n 144 (793)
.|.+|+|.... -.-+..+++|++|.+-+|.++... --.+.++++|++||++.-
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777766221 123455667777777766665421 123455666666666543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=4e-06 Score=57.43 Aligned_cols=36 Identities=31% Similarity=0.572 Sum_probs=18.1
Q ss_pred CCceeeccCCcccccCCccccCcCCCCEEECCCCcCC
Q 003813 630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLS 666 (793)
Q Consensus 630 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 666 (793)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=1.8e-05 Score=82.11 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=53.1
Q ss_pred CCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCc-cccccCCccccCCCC
Q 003813 460 IGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSN-KFHGDFPIQLCRLAS 538 (793)
Q Consensus 460 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~ 538 (793)
+..+.+++.|++++|.++. +|. -.++|+.|.+++|.-...+|..+ .++|+.|++++| .+. .+| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence 3446889999999998874 452 34579999998864434777654 357899999998 444 454 35
Q ss_pred cCEEEcccCcc
Q 003813 539 LQILDVAYNNL 549 (793)
Q Consensus 539 L~~L~Ls~N~l 549 (793)
|+.|+++++..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77777776654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.1e-05 Score=55.31 Aligned_cols=37 Identities=46% Similarity=0.709 Sum_probs=32.3
Q ss_pred CCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccc
Q 003813 653 RSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN 690 (793)
Q Consensus 653 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 690 (793)
++|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 56778999999999999999997
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=2.7e-05 Score=70.91 Aligned_cols=82 Identities=26% Similarity=0.311 Sum_probs=41.2
Q ss_pred CCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEc
Q 003813 87 SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLL 166 (793)
Q Consensus 87 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 166 (793)
....+||++|.+... ..|..++.|.+|.+++|+|+.+.|.--..+++|..|.|.+|.+..--.-..+..|++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344555555555422 234455555555555555555544443445555555555555542111112455566666666
Q ss_pred CCCC
Q 003813 167 SGND 170 (793)
Q Consensus 167 ~~n~ 170 (793)
-+|+
T Consensus 121 l~Np 124 (233)
T KOG1644|consen 121 LGNP 124 (233)
T ss_pred cCCc
Confidence 6554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=5.6e-06 Score=93.55 Aligned_cols=84 Identities=27% Similarity=0.377 Sum_probs=37.3
Q ss_pred CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCC-cccccccCCCCCC
Q 003813 35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQG-QIPSRLGNLTSLK 113 (793)
Q Consensus 35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~ 113 (793)
+|+|++|.+++-.+... +......++|+|+.||+|+++++.+. .++++++|++|.+.+=.+.. ..-..+.+|++|+
T Consensus 147 LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 45555555554444332 12222334555555555555554442 34455555555544444331 1112344455555
Q ss_pred EEeCcCCc
Q 003813 114 YLDLSFNQ 121 (793)
Q Consensus 114 ~L~Ls~n~ 121 (793)
.||+|...
T Consensus 224 vLDIS~~~ 231 (699)
T KOG3665|consen 224 VLDISRDK 231 (699)
T ss_pred eeeccccc
Confidence 55555433
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=1.3e-06 Score=87.81 Aligned_cols=86 Identities=23% Similarity=0.262 Sum_probs=43.3
Q ss_pred CcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCC-CCCCCCccC-CCCCCCCEEECcCc-cCCCcccc-cccCCCC
Q 003813 36 SLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCK-LHHFPPLSS-ANFSSLTTLDLSEN-EFQGQIPS-RLGNLTS 111 (793)
Q Consensus 36 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~ 111 (793)
..|+.|.+.++.=.+.........++|++++|++.+|. ++...-..+ ..+++|++|++..| .++...-. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35666666666554443333334566777777666664 222111111 34566677766663 23322111 1234566
Q ss_pred CCEEeCcCCc
Q 003813 112 LKYLDLSFNQ 121 (793)
Q Consensus 112 L~~L~Ls~n~ 121 (793)
|++|+++.+.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 6666666653
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.80 E-value=4.3e-05 Score=67.94 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCE
Q 003813 59 NSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEF 138 (793)
Q Consensus 59 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 138 (793)
..+++|+.+.+..+ +..+...+|.++++++.+.+.+ .+.......|..+++|+.+++..+ +..+....|.++ +|+.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence 34444444444442 4444444444444455554433 222222334444445555544433 333333444444 4555
Q ss_pred EEccCCccccccChhhhcCCCCC
Q 003813 139 LSLQSNRLQGNISSLGLENLTSI 161 (793)
Q Consensus 139 L~L~~n~l~~~i~~~~~~~l~~L 161 (793)
+.+.. .+. .++...|.++++|
T Consensus 108 i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 108 INIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp EE-TT-B-S-S----GGG-----
T ss_pred EEECC-Ccc-EECCccccccccC
Confidence 54443 222 3333334444443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.79 E-value=6e-05 Score=67.00 Aligned_cols=124 Identities=18% Similarity=0.261 Sum_probs=76.3
Q ss_pred CCCCCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCC
Q 003813 4 HQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSA 83 (793)
Q Consensus 4 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 83 (793)
.+|.++++|+.+.+.. .++.+.... |.++++|+.+.+.++ +..+++. ++.++++++.+.+.. .+..++...|.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~--F~~~~~l~~i~~~~~-~~~i~~~--~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENA--FSNCTSLKSINFPNN-LTSIGDN--AFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTT--TTT-TT-SEEEESST-TSCE-TT--TTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhh--ccccccccccccccc-cccccee--eeecccccccccccc-ccccccccccc
Confidence 4789999999999985 566666655 889999999999885 7776543 577888999999976 77777778899
Q ss_pred CCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCC
Q 003813 84 NFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLE 137 (793)
Q Consensus 84 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 137 (793)
.+++|+.+++..+ +......+|.++ +|+.+.+.. .+..+....|.++++|+
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9999999999876 554556778887 999999986 56666678888887774
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00013 Score=75.87 Aligned_cols=91 Identities=19% Similarity=0.275 Sum_probs=63.7
Q ss_pred ccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCC-cccccCchhHHhhccc
Q 003813 436 WMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN-ELVGNIPTWMGERFSR 514 (793)
Q Consensus 436 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~ 514 (793)
+..+.+++.|++++|.++ .+|. + .++|+.|.+++|.-...+|+.+ .++|+.|++++| .+. .+| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------cc
Confidence 445689999999999888 5562 2 3479999999866555677655 368999999999 554 555 35
Q ss_pred CcEEEccCcccc--ccCCccccCCCCcCEEEccc
Q 003813 515 LIILNLRSNKFH--GDFPIQLCRLASLQILDVAY 546 (793)
Q Consensus 515 L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~ 546 (793)
|+.|+++++... +.+| ++|+.|.+.+
T Consensus 114 Le~L~L~~n~~~~L~~LP------ssLk~L~I~~ 141 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVP------NGLTSLSINS 141 (426)
T ss_pred cceEEeCCCCCcccccCc------chHhheeccc
Confidence 778888876653 1233 3566776644
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.47 E-value=6.9e-06 Score=82.82 Aligned_cols=279 Identities=18% Similarity=0.121 Sum_probs=139.4
Q ss_pred CCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCC-CCCCCCCc-cCCCCCCC
Q 003813 11 NLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC-KLHHFPPL-SSANFSSL 88 (793)
Q Consensus 11 ~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L 88 (793)
.|+.|.++++.-......-.+...++++++|++.++...+.......-..|++|++|++..| .++...-. .-..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57888888874321111112346789999998888874433222333357889999999886 44443322 23468899
Q ss_pred CEEECcCcc-CCCcc-cccccCCCCCCEEeCcCCcCccCCcccc----cCCCCCCEEEccCCccccccChh-hhcCCCCC
Q 003813 89 TTLDLSENE-FQGQI-PSRLGNLTSLKYLDLSFNQFNSVVPGWL----SKLNDLEFLSLQSNRLQGNISSL-GLENLTSI 161 (793)
Q Consensus 89 ~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~i~~~-~~~~l~~L 161 (793)
++|+++++. |++.- -.-+.+++.++.+.+.+|.=.+ -+.+ +.+..+..+++..+......... .-..+..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 999999874 44321 1234566677777777653211 1222 23444566666565322122211 12356778
Q ss_pred cEEEcCCCCCCCCCCcccc-cCCCCCcEEEccCCcccccc-hhHHhhhccccCCCccEEEccCccccc--ccccccCCCC
Q 003813 162 QTLLLSGNDELGGKIPTSF-GRFCKLKSFSTGFTNLSQDI-SEILGIFSACVANELESLDLGSCQIFG--HMTNQLGRFK 237 (793)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~l~ 237 (793)
|.|..+++...+......+ .++.+|+.+.++.++--++. ...++. .-..|+.+++..+.... .+...-.+++
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r----n~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR----NCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc----CChhhhhhcccccceehhhhHhhhccCCc
Confidence 8888888763333222222 34566666666655421111 111111 01456666666553311 1112123456
Q ss_pred CCCEEeCcCCcCC-CCc----chhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCC
Q 003813 238 GLNFLDLSNTTMD-GSI----PLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANG 295 (793)
Q Consensus 238 ~L~~L~L~~n~l~-~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 295 (793)
.|+++.++++... +.. ...-.....|+.+.|+++.......-..+..++.|+.+++-+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 6666666655432 110 011122344555555555543222222344444444444433
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=9.6e-05 Score=83.75 Aligned_cols=142 Identities=21% Similarity=0.258 Sum_probs=85.7
Q ss_pred CCccEEEccCCCCC-CCCCccC-CCCCCCCEEECcCccCCCc-ccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCE
Q 003813 62 PSLKELKLSFCKLH-HFPPLSS-ANFSSLTTLDLSENEFQGQ-IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEF 138 (793)
Q Consensus 62 ~~L~~L~Ls~n~l~-~~~~~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 138 (793)
.+|++|++++.... .-.+..+ ..+|+|+.|.+++-.+... ......++++|..||+|+.+++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56777777765332 1111122 3467777777777655422 223445677777778877777664 55677777777
Q ss_pred EEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCC-Cc----ccccCCCCCcEEEccCCcccccchhHHh
Q 003813 139 LSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGK-IP----TSFGRFCKLKSFSTGFTNLSQDISEILG 205 (793)
Q Consensus 139 L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~-~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 205 (793)
|.+.+=.+...-.-..+-+|++|++||+|........ +. +.-..+++|+.||.+++.+...+-+.+-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 7777655552222223667788888888776532222 11 1223478899999998888776655443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00014 Score=69.37 Aligned_cols=109 Identities=24% Similarity=0.239 Sum_probs=72.0
Q ss_pred cCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCC--CCCCCCCccCCCCCCCCEEECcCccCCCc-ccccccC
Q 003813 32 LSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC--KLHHFPPLSSANFSSLTTLDLSENEFQGQ-IPSRLGN 108 (793)
Q Consensus 32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~ 108 (793)
...+..|+.|.+.+..+++... +-.+++|++|.+|.| ++..-.+.....+++|++|++++|++.-. .-..+..
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 3456777888888888877644 335788899999988 44433332345568999999999988721 1123456
Q ss_pred CCCCCEEeCcCCcCccCC---cccccCCCCCCEEEccCC
Q 003813 109 LTSLKYLDLSFNQFNSVV---PGWLSKLNDLEFLSLQSN 144 (793)
Q Consensus 109 l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n 144 (793)
+.+|..|++.+|..+... -..|.-+++|++||-...
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 677888888888766532 123556778888765443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=1.1e-05 Score=76.73 Aligned_cols=101 Identities=28% Similarity=0.265 Sum_probs=58.9
Q ss_pred CCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcc-cccccCCCCC
Q 003813 34 GLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQI-PSRLGNLTSL 112 (793)
Q Consensus 34 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L 112 (793)
.+.+.+.|++-++.+.++. ....++.|++|.||-|+|+.+.+ +..|++|++|+|..|.|.... -.-+.++++|
T Consensus 17 dl~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3455666666666666541 23456666666666666666653 666666666666666665321 1234566667
Q ss_pred CEEeCcCCcCccCCcc-----cccCCCCCCEEE
Q 003813 113 KYLDLSFNQFNSVVPG-----WLSKLNDLEFLS 140 (793)
Q Consensus 113 ~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~ 140 (793)
+.|-|..|.-.+..+. .+.-+++|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776666655443322 234567777665
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00029 Score=67.37 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCc--cCCCcccccccCCCCCCEEeCcCCcCccCC-cccccCCCCC
Q 003813 60 SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSEN--EFQGQIPSRLGNLTSLKYLDLSFNQFNSVV-PGWLSKLNDL 136 (793)
Q Consensus 60 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 136 (793)
.+..|+.|++.+..++.+. .|-.+++|++|++|.| ++.+..+.-...+++|++|++++|++..+. -..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 4566777777777777665 4667888889999888 666555555556688888888888876420 1223466777
Q ss_pred CEEEccCCcccccc--ChhhhcCCCCCcEEEcCC
Q 003813 137 EFLSLQSNRLQGNI--SSLGLENLTSIQTLLLSG 168 (793)
Q Consensus 137 ~~L~L~~n~l~~~i--~~~~~~~l~~L~~L~L~~ 168 (793)
..|++.+|..+..- ....|.-+++|++|+-..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 78888887665311 122355566676666444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.00019 Score=68.63 Aligned_cols=100 Identities=25% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccCh-hhhcCCCCCcE
Q 003813 85 FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS-LGLENLTSIQT 163 (793)
Q Consensus 85 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~ 163 (793)
+.+.+.|++-+|.+..+ ....+++.|++|.||-|+|+...| +..|++|++|+|..|.|. .+.. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 45677888888888744 345678899999999999887643 778899999999999887 4433 23678888888
Q ss_pred EEcCCCCCCCCCCcc-----cccCCCCCcEEE
Q 003813 164 LLLSGNDELGGKIPT-----SFGRFCKLKSFS 190 (793)
Q Consensus 164 L~L~~n~~~~~~~~~-----~l~~l~~L~~L~ 190 (793)
|.|..|+ ..|..+. .+.-+++|++||
T Consensus 93 LWL~ENP-Cc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENP-CCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCC-cccccchhHHHHHHHHcccchhcc
Confidence 8888887 4444332 234444554443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.003 Score=35.84 Aligned_cols=12 Identities=42% Similarity=0.431 Sum_probs=5.1
Q ss_pred CceeeccCCccc
Q 003813 631 LQSLNFSYNLFT 642 (793)
Q Consensus 631 L~~L~Ls~N~l~ 642 (793)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.84 E-value=0.0015 Score=73.05 Aligned_cols=111 Identities=32% Similarity=0.247 Sum_probs=51.9
Q ss_pred CCCCccEEEccCC-CCCCCC-CccCCCCCCCCEEECcCc-cCCCccc----ccccCCCCCCEEeCcCCc-CccCCccccc
Q 003813 60 SLPSLKELKLSFC-KLHHFP-PLSSANFSSLTTLDLSEN-EFQGQIP----SRLGNLTSLKYLDLSFNQ-FNSVVPGWLS 131 (793)
Q Consensus 60 ~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 131 (793)
.++.|+.|.+..+ .+.... ......+++|+.|+++++ ......+ .....+++|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566666666655 233211 113445566666666652 1111111 122344566666666665 3332222222
Q ss_pred -CCCCCCEEEccCCc-cccccChhhhcCCCCCcEEEcCCCC
Q 003813 132 -KLNDLEFLSLQSNR-LQGNISSLGLENLTSIQTLLLSGND 170 (793)
Q Consensus 132 -~l~~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n~ 170 (793)
.+++|++|.+.++. ++..--......+++|++|+++++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25666666655554 3321111113455666666666665
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.004 Score=35.28 Aligned_cols=21 Identities=52% Similarity=0.770 Sum_probs=12.5
Q ss_pred CCCEEECCCCcCCCCCcccccC
Q 003813 654 SIESLDFSANQLSGYIPQSMSN 675 (793)
Q Consensus 654 ~L~~L~Ls~N~l~~~~p~~l~~ 675 (793)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55555543
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.49 E-value=0.0042 Score=69.41 Aligned_cols=136 Identities=25% Similarity=0.205 Sum_probs=85.6
Q ss_pred CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCC--CCCCCC---CccCCCCCCCCEEECcCcc-CCCcccccc
Q 003813 33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC--KLHHFP---PLSSANFSSLTTLDLSENE-FQGQIPSRL 106 (793)
Q Consensus 33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~---~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~ 106 (793)
..++.|+.|.+.++.-............++.|++|+++++ .+...+ ......+++|+.|+++++. ++...-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 4578888888887743332123345678899999999873 222221 1234566889999999887 654443444
Q ss_pred cC-CCCCCEEeCcCCc-CccCC-cccccCCCCCCEEEccCCcccc--ccChhhhcCCCCCcEEEcCCC
Q 003813 107 GN-LTSLKYLDLSFNQ-FNSVV-PGWLSKLNDLEFLSLQSNRLQG--NISSLGLENLTSIQTLLLSGN 169 (793)
Q Consensus 107 ~~-l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~--~i~~~~~~~l~~L~~L~L~~n 169 (793)
.. +++|++|.+.++. ++... -.....+++|++|+++++.... .+... ..++++|+.|.+...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSL 331 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhc
Confidence 43 7899999988776 44322 2223468889999999886532 12333 445777777665543
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.23 E-value=0.0023 Score=59.81 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=74.4
Q ss_pred ccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEE
Q 003813 604 LNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLN 683 (793)
Q Consensus 604 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 683 (793)
....+.||++.|++. ..-..|.-++.|..||++.|.+. ..|..++.+..+..+++..|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 455688999999987 45567788899999999999998 88999999999999999999998 7899999999999999
Q ss_pred cccCccc
Q 003813 684 LSNNNLN 690 (793)
Q Consensus 684 ls~N~l~ 690 (793)
+-.|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999875
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.81 E-value=0.00063 Score=73.83 Aligned_cols=135 Identities=20% Similarity=0.180 Sum_probs=65.6
Q ss_pred CCccEEEccCCccccc----CCCCccCCCCCCEEEccCCcccc----cCCCC----CCCCCCccEEEccCCcccccc---
Q 003813 416 KNIEFFQLSKNHFSGE----IPDCWMNWPRLRMLNLRNNNFTG----SLPMS----IGTLSSLMSLNLRNNRLSGII--- 480 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~----~~~l~~L~~L~L~~n~l~~~~--- 480 (793)
..+++|++..|.+++. +.+.+.....++.++++.|.+.. .++.. +....++++|.+++|.++...
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 3444555555544432 22334445555556666555520 11111 223455666666666655211
Q ss_pred -CccccCCCC-CCEEeCCCCcccccCchhHHh---hc-ccCcEEEccCccccccC----CccccCCCCcCEEEcccCccc
Q 003813 481 -PTSFNNFTI-LEALDMGENELVGNIPTWMGE---RF-SRLIILNLRSNKFHGDF----PIQLCRLASLQILDVAYNNLS 550 (793)
Q Consensus 481 -~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~---~l-~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 550 (793)
...+...+. +..+++..|.+.+..-..... .+ ..++.++++.|.++..- ...+..++.++++.+++|.+.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 122333333 555667776654321111111 12 34567777777766432 233445667777777777764
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.68 E-value=0.0006 Score=74.00 Aligned_cols=191 Identities=20% Similarity=0.212 Sum_probs=111.1
Q ss_pred ccEEEccCccCCCCC----CcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccC
Q 003813 312 LTGLGVRSCRLGPRF----PLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVT 387 (793)
Q Consensus 312 L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~ 387 (793)
+..+.+..|.+.... ...+.....|+.|++++|.+.+.....+...+... .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~-------------------------~ 143 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP-------------------------Q 143 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc-------------------------h
Confidence 444555555554332 22345566777777777777643333332222111 1
Q ss_pred CCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc----cCCCCc----cCCCCCCEEEccCCccccc----
Q 003813 388 NLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG----EIPDCW----MNWPRLRMLNLRNNNFTGS---- 455 (793)
Q Consensus 388 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~----~~l~~L~~L~Ls~n~l~~~---- 455 (793)
..++.+++..|.+++.....+...+.....++.++++.|.+.. .++..+ ....++++|.+++|.++..
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 2334445555555555555555555556778888888886631 122233 3466788888888887621
Q ss_pred CCCCCCCCCC-ccEEEccCCccccc----cCccccCC-CCCCEEeCCCCcccccCchhHHh---hcccCcEEEccCcccc
Q 003813 456 LPMSIGTLSS-LMSLNLRNNRLSGI----IPTSFNNF-TILEALDMGENELVGNIPTWMGE---RFSRLIILNLRSNKFH 526 (793)
Q Consensus 456 ~~~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~---~l~~L~~L~L~~n~l~ 526 (793)
....+...+. +..|++..|++... ....+..+ ..++.++++.|.++..-..++.+ .++.++++.+++|.+.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 1112334444 66788888887643 22344555 67789999999887554444332 4668889999999887
Q ss_pred c
Q 003813 527 G 527 (793)
Q Consensus 527 ~ 527 (793)
.
T Consensus 304 ~ 304 (478)
T KOG4308|consen 304 D 304 (478)
T ss_pred c
Confidence 4
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.82 E-value=0.059 Score=28.21 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=3.8
Q ss_pred CceeeccCCccc
Q 003813 631 LQSLNFSYNLFT 642 (793)
Q Consensus 631 L~~L~Ls~N~l~ 642 (793)
|+.|+|++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.27 E-value=0.091 Score=27.50 Aligned_cols=11 Identities=45% Similarity=0.579 Sum_probs=3.2
Q ss_pred ccEEEccCCCC
Q 003813 64 LKELKLSFCKL 74 (793)
Q Consensus 64 L~~L~Ls~n~l 74 (793)
|++|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33344444433
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.13 E-value=0.005 Score=57.64 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=54.2
Q ss_pred hCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCC
Q 003813 58 INSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLE 137 (793)
Q Consensus 58 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 137 (793)
+......+.||++.|++..... .|+-++.|..||++.|.+. ..|..+.....++.+++..|..+. .|.++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcc
Confidence 4455666666666666655543 4555566666666666666 556666666666666666666554 566666666666
Q ss_pred EEEccCCccc
Q 003813 138 FLSLQSNRLQ 147 (793)
Q Consensus 138 ~L~L~~n~l~ 147 (793)
++++..|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666666544
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.87 E-value=0.18 Score=29.82 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=9.4
Q ss_pred CCccEEEccCCCCCCCCCcc
Q 003813 62 PSLKELKLSFCKLHHFPPLS 81 (793)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~~~~ 81 (793)
++|++|+|++|+++.+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34445555555554444433
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.87 E-value=0.18 Score=29.82 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=9.4
Q ss_pred CCccEEEccCCCCCCCCCcc
Q 003813 62 PSLKELKLSFCKLHHFPPLS 81 (793)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~~~~ 81 (793)
++|++|+|++|+++.+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34445555555554444433
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.38 E-value=0.24 Score=29.26 Aligned_cols=15 Identities=47% Similarity=0.647 Sum_probs=8.3
Q ss_pred CCCCEEECCCCcCCC
Q 003813 653 RSIESLDFSANQLSG 667 (793)
Q Consensus 653 ~~L~~L~Ls~N~l~~ 667 (793)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455555555555553
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.38 E-value=0.24 Score=29.26 Aligned_cols=15 Identities=47% Similarity=0.647 Sum_probs=8.3
Q ss_pred CCCCEEECCCCcCCC
Q 003813 653 RSIESLDFSANQLSG 667 (793)
Q Consensus 653 ~~L~~L~Ls~N~l~~ 667 (793)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455555555555553
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.31 E-value=0.12 Score=47.76 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=19.4
Q ss_pred CCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813 134 NDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170 (793)
Q Consensus 134 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 170 (793)
..++.+|.++..+. ..--..+.+++.++.|.+.+|.
T Consensus 101 ~~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHH-HHHHHHHhccchhhhheecccc
Confidence 34667777776665 2222224455555566665554
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.70 E-value=0.2 Score=46.50 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=17.4
Q ss_pred CCCcEEEcCCCCCCCCCCcccccCCCCCcEEEc
Q 003813 159 TSIQTLLLSGNDELGGKIPTSFGRFCKLKSFST 191 (793)
Q Consensus 159 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l 191 (793)
++|+.|++++|..++......+..+++|+.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 455666666655455444445555555554444
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.01 E-value=0.93 Score=26.10 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=4.9
Q ss_pred CCCEEeCCCCccc
Q 003813 489 ILEALDMGENELV 501 (793)
Q Consensus 489 ~L~~L~L~~N~l~ 501 (793)
+|+.|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.50 E-value=2.8 Score=24.82 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=9.7
Q ss_pred cCCCCEEECCCCcCC
Q 003813 652 MRSIESLDFSANQLS 666 (793)
Q Consensus 652 l~~L~~L~Ls~N~l~ 666 (793)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356667777777665
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.20 E-value=2.1 Score=25.23 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=8.9
Q ss_pred CCceeeccCCcccccCCc
Q 003813 630 GLQSLNFSYNLFTGRIPD 647 (793)
Q Consensus 630 ~L~~L~Ls~N~l~~~~p~ 647 (793)
+|+.|++++|+++ ..|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3555555555555 4443
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.06 E-value=1.6 Score=56.42 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=35.5
Q ss_pred ECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCc
Q 003813 659 DFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 702 (793)
Q Consensus 659 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~ 702 (793)
||++|+|+.+.+..|..+++|+.|+|++|++.|.|...+...|+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL 44 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWA 44 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHH
Confidence 68889998777788888999999999999999998865443343
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.55 E-value=13 Score=39.56 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=28.8
Q ss_pred CccEEEccCCcccccCCCCccCC---CCCCEEEccCCccc---ccCCCCCCCCCCccEEEccCCcc
Q 003813 417 NIEFFQLSKNHFSGEIPDCWMNW---PRLRMLNLRNNNFT---GSLPMSIGTLSSLMSLNLRNNRL 476 (793)
Q Consensus 417 ~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l 476 (793)
.+.+++++.|.....+|.....+ ..++.++.+.-.+. +..+..++.-+.++..+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 45566666666555555433221 23555555554443 11222233344566666665543
No 90
>PF15102 TMEM154: TMEM154 protein family
Probab=63.18 E-value=9.7 Score=33.49 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhheeeEecchhhH
Q 003813 753 LGFVVGFWCFIGPLLIKRRWRYK 775 (793)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~ 775 (793)
+.+++.++++++++.++||||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 33444445555556666778764
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.95 E-value=6.8 Score=23.59 Aligned_cols=13 Identities=46% Similarity=0.715 Sum_probs=7.1
Q ss_pred CCCEEECCCCcCC
Q 003813 654 SIESLDFSANQLS 666 (793)
Q Consensus 654 ~L~~L~Ls~N~l~ 666 (793)
+|+.|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.65 E-value=5.7 Score=43.04 Aligned_cols=64 Identities=31% Similarity=0.321 Sum_probs=38.2
Q ss_pred CCCCCccEEEccCCCCCCCCC--ccCCCCCCCCEEECcCc--cCCCcccccccC--CCCCCEEeCcCCcCcc
Q 003813 59 NSLPSLKELKLSFCKLHHFPP--LSSANFSSLTTLDLSEN--EFQGQIPSRLGN--LTSLKYLDLSFNQFNS 124 (793)
Q Consensus 59 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~--l~~L~~L~Ls~n~l~~ 124 (793)
.+.+.+..++|++|++..+.. ..-...|+|+.|+|++| .+.. ..++.+ ...|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 356777777777777766653 11123577788888877 3331 122322 2357777788877654
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=47.55 E-value=60 Score=34.83 Aligned_cols=85 Identities=18% Similarity=0.099 Sum_probs=40.2
Q ss_pred CccEEEccCCccccccCcc--ccCCCCCCEEeCCCCccc-ccCchhH-------HhhcccCcEEEccCccccccCC---c
Q 003813 465 SLMSLNLRNNRLSGIIPTS--FNNFTILEALDMGENELV-GNIPTWM-------GERFSRLIILNLRSNKFHGDFP---I 531 (793)
Q Consensus 465 ~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~-~~~p~~~-------~~~l~~L~~L~L~~n~l~~~~p---~ 531 (793)
.+++|..++|.+.+..... ...-++.+.+++..-.-. ..++..+ .....-+..+.++.|+...... .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 3667777777666544322 223345555555443210 0000000 0012235666677766653221 1
Q ss_pred cccCCCCcCEEEcccCcc
Q 003813 532 QLCRLASLQILDVAYNNL 549 (793)
Q Consensus 532 ~~~~l~~L~~L~Ls~N~l 549 (793)
....-+.+..|++++|..
T Consensus 435 ~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGM 452 (553)
T ss_pred hhccCcccccccccCCCc
Confidence 233445677777777765
No 94
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=47.10 E-value=24 Score=23.35 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=6.1
Q ss_pred eeeeehHHHHHHHH
Q 003813 747 LYISMALGFVVGFW 760 (793)
Q Consensus 747 ~~~~~~~~~~~~~~ 760 (793)
+.+++++.++++.+
T Consensus 13 Ia~~VvVPV~vI~~ 26 (40)
T PF08693_consen 13 IAVGVVVPVGVIII 26 (40)
T ss_pred EEEEEEechHHHHH
Confidence 34444444444333
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.06 E-value=13 Score=40.52 Aligned_cols=69 Identities=22% Similarity=0.159 Sum_probs=49.6
Q ss_pred CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCC--CCCCCCCccCCCCCCCCEEECcCccCCCc
Q 003813 33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFC--KLHHFPPLSSANFSSLTTLDLSENEFQGQ 101 (793)
Q Consensus 33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 101 (793)
.+.+.+..++|++|++..+..........|+|+.|+|++| .+.......=-+...|++|-+.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4678889999999999888654444467799999999999 44433321112234689999999988743
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.18 E-value=33 Score=20.03 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=7.4
Q ss_pred CCCcEEEcCCCC
Q 003813 159 TSIQTLLLSGND 170 (793)
Q Consensus 159 ~~L~~L~L~~n~ 170 (793)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666665
No 97
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.05 E-value=9 Score=32.83 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=9.6
Q ss_pred eeehHHHHHHHHHhhheeeE
Q 003813 749 ISMALGFVVGFWCFIGPLLI 768 (793)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~ 768 (793)
+++++|+++|+++++++++|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHH
Confidence 34455555555544444333
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.94 E-value=50 Score=43.73 Aligned_cols=32 Identities=34% Similarity=0.332 Sum_probs=28.2
Q ss_pred EcccCcceeeCccccccccCCceeeccCCccc
Q 003813 611 DISKNNFSGEVPVEVTNLQGLQSLNFSYNLFT 642 (793)
Q Consensus 611 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 642 (793)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777778889999999999999887
Done!