Query 003813
Match_columns 793
No_of_seqs 729 out of 4406
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 04:55:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-80 1.1E-84 725.8 44.6 666 11-723 51-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-72 4E-77 661.8 48.1 661 35-715 49-719 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-62 5.4E-67 571.6 53.4 604 2-702 19-635 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-59 3.9E-64 547.6 48.2 565 62-710 25-619 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-57 4.7E-62 522.9 44.9 542 39-700 15-570 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-56 1.3E-60 527.3 42.8 561 40-722 8-590 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-56 1E-60 511.8 40.5 545 39-702 14-570 (606)
8 3t6q_A CD180 antigen; protein- 100.0 4.3E-55 1.5E-59 502.2 41.0 535 13-670 15-564 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-54 1.3E-58 494.5 39.3 530 12-670 13-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-52 8.8E-57 494.5 38.7 534 65-716 7-564 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 3.6E-51 1.2E-55 466.5 38.8 518 39-699 10-540 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 4E-49 1.4E-53 449.7 35.5 516 12-671 9-536 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-49 7.2E-54 449.4 31.9 489 67-695 10-515 (549)
14 4g8a_A TOLL-like receptor 4; l 100.0 2E-47 6.8E-52 442.1 42.1 548 39-700 34-590 (635)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-47 3.8E-52 435.3 33.4 500 9-670 4-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-48 8E-53 437.4 24.3 473 65-697 3-488 (520)
17 4eco_A Uncharacterized protein 100.0 8.8E-48 3E-52 440.3 21.0 452 86-692 81-602 (636)
18 4eco_A Uncharacterized protein 100.0 7.9E-48 2.7E-52 440.7 17.1 454 62-668 81-602 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 8.5E-46 2.9E-50 416.5 29.1 459 13-670 3-485 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 3.6E-44 1.2E-48 414.8 40.4 540 2-667 20-581 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 1.2E-45 4E-50 428.3 24.7 118 176-299 440-586 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-45 8.9E-50 415.8 25.7 477 61-698 30-518 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 1.2E-44 4.2E-49 419.7 27.6 402 120-691 435-865 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-42 3.6E-47 394.4 29.7 469 35-670 30-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2.8E-40 9.7E-45 365.2 29.3 372 237-697 30-415 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 3.2E-40 1.1E-44 360.7 21.0 403 85-696 10-417 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1.6E-38 5.6E-43 351.1 33.8 392 65-554 13-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 8.8E-39 3E-43 349.4 26.0 187 60-299 9-208 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-37 7.3E-42 338.7 28.2 407 32-558 38-451 (457)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-36 3.7E-41 333.1 25.3 359 57-558 37-395 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 3.3E-36 1.1E-40 334.4 26.2 257 415-716 103-360 (477)
32 1o6v_A Internalin A; bacterial 100.0 6.4E-35 2.2E-39 322.3 33.2 344 35-501 45-388 (466)
33 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-36 1.2E-40 313.3 20.3 258 416-720 50-312 (313)
34 1o6v_A Internalin A; bacterial 100.0 5.7E-35 2E-39 322.7 30.5 345 213-692 46-390 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 3.1E-34 1.1E-38 318.5 31.8 322 39-503 14-335 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 1.9E-33 6.6E-38 303.3 26.7 313 261-695 45-357 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2.4E-33 8E-38 319.2 26.2 333 261-716 51-384 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 9.5E-33 3.3E-37 297.8 27.6 129 416-552 226-354 (390)
39 1ogq_A PGIP-2, polygalacturona 100.0 7.8E-34 2.7E-38 295.5 17.1 252 388-691 50-306 (313)
40 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.9E-36 284.0 28.8 305 8-372 42-346 (347)
41 4fmz_A Internalin; leucine ric 100.0 2.4E-31 8.2E-36 282.3 27.7 306 33-401 41-346 (347)
42 3oja_B Anopheles plasmodium-re 100.0 2.4E-31 8.2E-36 302.7 27.9 311 109-552 50-360 (597)
43 1z7x_W Ribonuclease inhibitor; 100.0 4.6E-34 1.6E-38 316.1 0.8 389 213-691 3-441 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 6.3E-34 2.1E-38 315.0 -0.4 381 62-526 3-440 (461)
45 1xku_A Decorin; proteoglycan, 100.0 2.5E-29 8.6E-34 264.4 30.1 253 35-307 30-284 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 7.8E-30 2.7E-34 268.4 25.9 288 36-344 33-330 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-30 1.8E-34 269.7 22.9 221 415-688 101-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 1.1E-29 3.9E-34 267.1 25.0 222 415-688 99-330 (330)
49 2z66_A Variable lymphocyte rec 100.0 4.6E-29 1.6E-33 259.5 20.4 254 391-696 10-267 (306)
50 3zyi_A Leucine-rich repeat-con 100.0 2.1E-28 7.1E-33 269.0 25.1 253 390-696 56-309 (452)
51 4fcg_A Uncharacterized protein 100.0 6.7E-29 2.3E-33 259.7 18.4 227 415-690 80-314 (328)
52 3zyj_A Leucine-rich repeat-con 100.0 3.1E-28 1.1E-32 266.6 24.1 253 390-696 45-298 (440)
53 3ogk_B Coronatine-insensitive 100.0 2.3E-30 7.7E-35 296.1 6.3 424 58-546 69-547 (592)
54 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-28 3.9E-33 253.5 18.0 235 419-702 14-250 (285)
55 2z80_A TOLL-like receptor 2, v 100.0 5.7E-29 2E-33 264.2 14.2 259 416-695 52-319 (353)
56 3ogk_B Coronatine-insensitive 100.0 4.1E-30 1.4E-34 293.9 4.0 386 235-692 110-528 (592)
57 2z80_A TOLL-like receptor 2, v 100.0 8.9E-28 3.1E-32 255.0 20.9 280 7-300 28-315 (353)
58 2z66_A Variable lymphocyte rec 100.0 1.9E-27 6.4E-32 247.3 20.7 249 39-300 10-262 (306)
59 1ozn_A Reticulon 4 receptor; N 100.0 8.9E-28 3E-32 246.9 17.3 253 391-696 14-267 (285)
60 4fcg_A Uncharacterized protein 99.9 1.6E-27 5.4E-32 249.3 18.2 205 414-667 102-315 (328)
61 1wwl_A Monocyte differentiatio 99.9 6.2E-29 2.1E-33 258.7 6.6 208 415-692 94-311 (312)
62 3zyi_A Leucine-rich repeat-con 99.9 3.4E-26 1.2E-30 251.4 25.1 252 37-302 55-306 (452)
63 3zyj_A Leucine-rich repeat-con 99.9 2.9E-26 1E-30 250.9 24.5 252 37-302 44-295 (440)
64 2z62_A TOLL-like receptor 4, v 99.9 4.2E-26 1.4E-30 233.2 22.0 211 440-696 28-243 (276)
65 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-27 1.9E-31 244.6 14.2 220 414-692 32-252 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 5.9E-28 2E-32 251.9 6.3 222 415-695 57-281 (317)
67 1wwl_A Monocyte differentiatio 99.9 1E-27 3.5E-32 249.4 7.0 208 311-555 44-270 (312)
68 3oja_A Leucine-rich immune mol 99.9 1.2E-26 4E-31 256.1 15.5 226 408-692 26-252 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 6.6E-25 2.3E-29 246.6 26.0 203 415-695 100-302 (622)
70 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-25 1.4E-29 248.2 23.5 188 416-677 121-308 (622)
71 3oja_A Leucine-rich immune mol 99.9 2.1E-26 7.2E-31 254.1 12.3 243 389-694 35-286 (487)
72 2o6q_A Variable lymphocyte rec 99.9 5E-25 1.7E-29 224.0 21.1 207 417-695 17-223 (270)
73 2p1m_B Transport inhibitor res 99.9 1.3E-27 4.4E-32 273.5 -1.1 310 32-367 62-405 (594)
74 2p1m_B Transport inhibitor res 99.9 2.1E-27 7.1E-32 271.7 0.4 158 487-688 371-542 (594)
75 1p9a_G Platelet glycoprotein I 99.9 1.5E-24 5.1E-29 222.3 19.3 207 436-694 6-212 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 2.3E-24 7.7E-29 220.3 20.5 213 415-670 27-241 (276)
77 2o6q_A Variable lymphocyte rec 99.9 2.2E-23 7.4E-28 212.0 21.2 205 388-668 16-220 (270)
78 2ca6_A RAN GTPase-activating p 99.9 1.1E-25 3.8E-30 242.1 2.5 243 408-694 24-320 (386)
79 3rfs_A Internalin B, repeat mo 99.9 7.1E-24 2.4E-28 215.7 15.2 203 438-696 39-241 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.5E-23 5.1E-28 213.3 17.4 209 33-261 38-246 (272)
81 3goz_A Leucine-rich repeat-con 99.9 4.5E-25 1.6E-29 234.7 4.4 257 393-693 3-300 (362)
82 1p9a_G Platelet glycoprotein I 99.9 5.3E-23 1.8E-27 210.7 18.4 202 414-667 8-209 (290)
83 2xwt_C Thyrotropin receptor; s 99.9 3.6E-23 1.2E-27 206.3 14.7 196 441-687 32-236 (239)
84 4glp_A Monocyte differentiatio 99.9 1.2E-23 4.1E-28 218.6 9.7 209 416-691 91-308 (310)
85 4glp_A Monocyte differentiatio 99.9 1.5E-23 5E-28 217.9 9.2 200 464-713 91-307 (310)
86 3m19_A Variable lymphocyte rec 99.9 8.5E-23 2.9E-27 205.1 14.2 183 440-694 14-196 (251)
87 2ast_B S-phase kinase-associat 99.9 1.3E-23 4.3E-28 221.7 7.9 252 390-696 49-312 (336)
88 2xwt_C Thyrotropin receptor; s 99.9 2.9E-22 9.9E-27 199.8 15.5 199 415-664 30-237 (239)
89 2ca6_A RAN GTPase-activating p 99.9 9.1E-24 3.1E-28 227.1 4.1 237 390-670 34-320 (386)
90 1h6u_A Internalin H; cell adhe 99.9 3.8E-22 1.3E-26 206.6 15.6 194 437-691 38-231 (308)
91 2ast_B S-phase kinase-associat 99.9 3.7E-23 1.3E-27 218.2 7.6 212 415-675 92-315 (336)
92 3m19_A Variable lymphocyte rec 99.9 2.8E-21 9.5E-26 194.0 17.7 181 416-668 14-194 (251)
93 4ay9_X Follicle-stimulating ho 99.9 7.4E-21 2.5E-25 201.0 18.3 242 391-689 12-258 (350)
94 3goz_A Leucine-rich repeat-con 99.9 5.3E-22 1.8E-26 211.0 9.5 271 66-354 2-304 (362)
95 1h6u_A Internalin H; cell adhe 99.8 1.5E-20 5.3E-25 194.5 18.0 195 32-251 37-231 (308)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 3E-21 1E-25 189.0 9.8 178 491-716 14-193 (220)
97 3cvr_A Invasion plasmid antige 99.8 1.9E-20 6.6E-25 207.5 16.0 189 416-677 59-254 (571)
98 3cvr_A Invasion plasmid antige 99.8 1.8E-20 6E-25 207.9 15.6 134 389-550 60-193 (571)
99 2o6s_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 180.6 15.1 128 420-551 11-138 (208)
100 2v9t_B SLIT homolog 2 protein 99.8 1.3E-20 4.4E-25 184.5 10.2 158 491-696 14-171 (220)
101 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 176.0 17.3 150 13-170 10-159 (208)
102 4ay9_X Follicle-stimulating ho 99.8 1.3E-19 4.5E-24 191.3 17.6 237 419-706 12-252 (350)
103 3e6j_A Variable lymphocyte rec 99.8 2.7E-19 9.4E-24 176.3 14.5 157 490-695 21-177 (229)
104 2xot_A Amphoterin-induced prot 99.8 2.2E-19 7.7E-24 190.4 12.0 180 443-694 21-206 (361)
105 1h6t_A Internalin B; cell adhe 99.8 8.1E-19 2.8E-23 179.8 14.5 187 420-691 28-214 (291)
106 1h6t_A Internalin B; cell adhe 99.8 4.1E-19 1.4E-23 182.0 10.6 126 415-551 45-170 (291)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-18 5E-23 169.8 13.9 156 443-670 14-170 (220)
108 1w8a_A SLIT protein; signaling 99.8 5.8E-19 2E-23 168.7 9.1 155 516-717 11-167 (192)
109 1m9s_A Internalin B; cell inva 99.8 7.7E-19 2.6E-23 197.2 10.7 124 416-550 43-166 (605)
110 2xot_A Amphoterin-induced prot 99.8 2.5E-18 8.7E-23 182.2 12.4 180 418-642 20-202 (361)
111 2v9t_B SLIT homolog 2 protein 99.8 1.1E-17 3.8E-22 163.6 15.7 134 416-550 32-165 (220)
112 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.3E-22 164.4 16.1 156 442-670 21-176 (229)
113 1dce_A Protein (RAB geranylger 99.7 1.8E-20 6E-25 209.3 -5.0 191 438-696 347-552 (567)
114 4ezg_A Putative uncharacterize 99.7 5.9E-18 2E-22 162.7 11.7 152 487-691 43-195 (197)
115 3sb4_A Hypothetical leucine ri 99.7 1.1E-18 3.7E-23 182.8 6.3 100 213-315 226-326 (329)
116 4ezg_A Putative uncharacterize 99.7 8.4E-18 2.9E-22 161.6 11.5 152 34-197 42-194 (197)
117 1m9s_A Internalin B; cell inva 99.7 3.9E-18 1.3E-22 191.5 10.5 121 37-170 22-142 (605)
118 1xeu_A Internalin C; cellular 99.7 6.8E-18 2.3E-22 170.0 10.5 168 465-692 20-187 (263)
119 1xeu_A Internalin C; cellular 99.7 3.7E-18 1.3E-22 171.9 6.8 123 416-550 19-141 (263)
120 4b8c_D Glucose-repressible alc 99.7 2.1E-18 7.3E-23 198.8 5.6 181 456-691 216-405 (727)
121 1dce_A Protein (RAB geranylger 99.7 3.5E-19 1.2E-23 198.9 -1.3 106 606-716 442-549 (567)
122 3sb4_A Hypothetical leucine ri 99.7 4E-17 1.4E-21 170.7 13.8 286 333-684 24-328 (329)
123 4b8c_D Glucose-repressible alc 99.7 2.8E-18 9.5E-23 197.9 4.0 191 421-666 206-404 (727)
124 2wfh_A SLIT homolog 2 protein 99.7 2.6E-17 9E-22 157.0 9.3 134 516-697 13-146 (193)
125 1w8a_A SLIT protein; signaling 99.7 5.6E-17 1.9E-21 154.9 10.3 156 491-696 11-168 (192)
126 2o6r_A Variable lymphocyte rec 99.6 6.3E-16 2.2E-20 145.7 12.2 88 608-695 55-142 (177)
127 4fs7_A Uncharacterized protein 99.6 7.8E-15 2.7E-19 157.5 22.0 102 434-541 291-392 (394)
128 2ell_A Acidic leucine-rich nuc 99.6 5.3E-16 1.8E-20 144.9 10.2 83 608-690 74-160 (168)
129 2je0_A Acidic leucine-rich nuc 99.6 3.3E-16 1.1E-20 143.1 8.3 129 512-686 16-149 (149)
130 2ell_A Acidic leucine-rich nuc 99.6 8.2E-16 2.8E-20 143.6 10.5 136 415-555 23-164 (168)
131 4fdw_A Leucine rich hypothetic 99.6 1.2E-14 4.1E-19 155.0 20.7 265 35-322 112-382 (401)
132 4fdw_A Leucine rich hypothetic 99.6 2.1E-14 7.1E-19 153.1 22.4 266 60-346 111-382 (401)
133 4fs7_A Uncharacterized protein 99.6 3.1E-14 1.1E-18 152.8 23.1 97 415-517 296-392 (394)
134 2wfh_A SLIT homolog 2 protein 99.6 8.9E-15 3E-19 139.4 15.6 128 13-148 13-140 (193)
135 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.4E-20 138.5 8.9 129 415-546 16-149 (149)
136 2o6r_A Variable lymphocyte rec 99.6 2.5E-14 8.6E-19 134.7 15.1 108 62-170 28-135 (177)
137 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5.2E-21 152.9 -4.1 152 487-690 17-185 (198)
138 3g39_A Variable lymphocyte rec 99.5 2.3E-14 7.9E-19 133.5 10.4 89 607-695 32-120 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.3E-14 8E-19 134.7 9.9 132 32-170 15-151 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-14 8.2E-19 134.6 9.1 131 414-550 17-153 (176)
141 2r9u_A Variable lymphocyte rec 99.5 8.6E-14 2.9E-18 130.0 10.5 89 607-695 35-123 (174)
142 1ds9_A Outer arm dynein; leuci 99.5 5.6E-16 1.9E-20 149.0 -4.7 58 607-666 117-185 (198)
143 4gt6_A Cell surface protein; l 99.4 2.7E-11 9.3E-16 129.8 25.5 127 415-549 264-390 (394)
144 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 120.9 13.1 106 38-148 11-116 (170)
145 4gt6_A Cell surface protein; l 99.4 6.1E-11 2.1E-15 127.0 26.2 318 32-369 59-388 (394)
146 2r9u_A Variable lymphocyte rec 99.4 2.5E-12 8.6E-17 120.0 12.3 104 39-147 15-118 (174)
147 3un9_A NLR family member X1; l 99.4 4.1E-14 1.4E-18 149.4 -1.8 67 607-673 185-259 (372)
148 2ifg_A High affinity nerve gro 99.3 5.5E-12 1.9E-16 132.9 10.4 86 608-694 34-120 (347)
149 4h09_A Hypothetical leucine ri 99.2 2.1E-09 7E-14 114.6 24.4 73 415-489 285-357 (379)
150 2ifg_A High affinity nerve gro 99.2 2.5E-11 8.5E-16 127.9 8.4 59 608-667 59-117 (347)
151 3un9_A NLR family member X1; l 99.2 3.5E-12 1.2E-16 134.5 1.6 63 213-275 183-253 (372)
152 4h09_A Hypothetical leucine ri 99.1 8.9E-09 3.1E-13 109.6 22.3 305 30-358 40-355 (379)
153 2ra8_A Uncharacterized protein 98.8 2.7E-09 9.1E-14 111.3 5.0 82 605-688 252-341 (362)
154 2ra8_A Uncharacterized protein 98.7 1.2E-08 4.2E-13 106.4 8.2 166 102-297 164-341 (362)
155 3rw6_A Nuclear RNA export fact 98.4 5.4E-08 1.8E-12 95.9 1.8 84 610-695 148-238 (267)
156 3rw6_A Nuclear RNA export fact 98.4 2.2E-07 7.6E-12 91.5 5.1 81 602-684 167-258 (267)
157 1io0_A Tropomodulin; LRR prote 98.4 5.6E-08 1.9E-12 91.3 0.4 87 83-170 62-162 (185)
158 1io0_A Tropomodulin; LRR prote 98.3 8.8E-08 3E-12 90.0 0.8 113 414-526 34-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 3.1E-06 1.1E-10 77.0 1.4 16 155-170 135-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4.2E-10 73.0 3.9 84 465-548 62-150 (176)
161 3rfe_A Platelet glycoprotein I 97.6 0.00011 3.8E-09 63.8 6.5 63 632-696 11-74 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00015 5E-09 67.3 1.8 23 408-430 62-84 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00039 1.3E-08 64.4 3.6 18 257-274 66-83 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.0035 1.2E-07 54.2 5.7 36 63-98 32-67 (130)
165 2lz0_A Uncharacterized protein 68.1 11 0.00037 30.2 6.0 46 73-119 7-52 (100)
166 2lz0_A Uncharacterized protein 58.4 21 0.00073 28.4 6.1 47 427-474 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-80 Score=725.79 Aligned_cols=666 Identities=28% Similarity=0.373 Sum_probs=430.9
Q ss_pred CCcEEeCCCCCCCCCCC-CccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCc--cCCCCCC
Q 003813 11 NLQYLDLSGYNFKLHAD-TISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPL--SSANFSS 87 (793)
Q Consensus 11 ~L~~L~Ls~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~ 87 (793)
+++.|||+++.+..... ..+.+.++++|+.++++.+.+...++ .++.+++|++|+|++|.+++..+. .++++++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS---GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCC---CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred cEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCch---hhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 45555555554421000 01124455555555555554433222 245555555555555555543333 4555555
Q ss_pred CCEEECcCccCCCcccccc-cCCCCCCEEeCcCCcCccCCccc---ccCCCCCCEEEccCCccccccChhhhcCCCCCcE
Q 003813 88 LTTLDLSENEFQGQIPSRL-GNLTSLKYLDLSFNQFNSVVPGW---LSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQT 163 (793)
Q Consensus 88 L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 163 (793)
|++|++++|.+.+..|..+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+.+.++ +..+++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCE
Confidence 5555555555554444443 55555555555555555554444 4555555555555555554333 245555555
Q ss_pred EEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEe
Q 003813 164 LLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLD 243 (793)
Q Consensus 164 L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 243 (793)
|++++|. +.+.+|. ++++++|++|++++|.+++.+|..+..+ ++|++|++++|++.+..|.. .+++|++|+
T Consensus 205 L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 205 LDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC-----TELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp EECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTC-----SSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred EECcCCc-CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcC-----CCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 5555555 4444444 5555555555555555555555555554 55555555555555554443 455555555
Q ss_pred CcCCcCCCCcchhhcCC-CCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCC-CCCcccccEEEccCcc
Q 003813 244 LSNTTMDGSIPLSLGQI-ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPN-WVPPFQLTGLGVRSCR 321 (793)
Q Consensus 244 L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~~~ 321 (793)
+++|.+++.+|..+... ++|++|++++|.+++.+|. .+.++++|++|++++|.+.+.++.. +..+++|++|++++|.
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 55555555555555443 5555555555555554444 4555555555555555555544443 4555555555555555
Q ss_pred CCCCCCcccccCC-CCCeEEeecCccccccChhHHhc-cccccEEEeeCccccccCCC-CCCCCCCccCCCCcEEEcccC
Q 003813 322 LGPRFPLWLQSQK-KLNDLYISSTRISAKIPRRFWNS-IFQYWFLNISGNQMYGGVPK-FDSPSMPLVTNLGSIFDLSNN 398 (793)
Q Consensus 322 ~~~~~~~~l~~~~-~L~~L~l~~n~i~~~~~~~~~~~-~~~L~~L~ls~n~l~~~~~~-~~~~~~~~~~~~l~~l~ls~n 398 (793)
+.+.+|.++..++ +|++|++++|++.+.+|..+... +++|++|++++|++++.+|. +.. ...++.+++++|
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~N 428 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN------CSELVSLHLSFN 428 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG------CTTCCEEECCSS
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc------CCCCCEEECcCC
Confidence 5555565555555 66666666666665555544321 45566666666666655552 222 455666677777
Q ss_pred cccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCcccc
Q 003813 399 ALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSG 478 (793)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 478 (793)
++++.+|..+.. +++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++
T Consensus 429 ~l~~~~p~~l~~----l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 429 YLSGTIPSSLGS----LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp EEESCCCGGGGG----CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred cccCcccHHHhc----CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 666666654433 6778888888888887788888888888888888888887778778888888888888888887
Q ss_pred ccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccC-----------
Q 003813 479 IIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYN----------- 547 (793)
Q Consensus 479 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N----------- 547 (793)
.+|.++..+++|++|++++|+++|.+|..+. .+++|++|++++|+++|.+|..+.....+..+++..+
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 7888888888888888888888877887776 6788888888888888888877766655554443331
Q ss_pred -----------ccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc
Q 003813 548 -----------NLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN 616 (793)
Q Consensus 548 -----------~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 616 (793)
.+.+..+..+..++.+...+.. .....|..+.....++.|+.|||++|+
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--------------------~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT--------------------SRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT--------------------SCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred cccccccccccccccccchhhhccccccccccc--------------------cceecccCchhhhccccccEEECcCCc
Confidence 1122222222222222111110 011223333444556778999999999
Q ss_pred ceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813 617 FSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 617 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
++|.+|.+++++++|++|+|++|+++|.+|+.|+++++|++|||++|+++|.+|..++.+++|++||+++|+++|+||.+
T Consensus 644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcCCccccCC-CccCCCCCCCCCC
Q 003813 697 TQLQSFGGSSFADN-DLCGAPLPNCTKK 723 (793)
Q Consensus 697 ~~~~~~~~~~~~~n-~l~~~~~~~c~~~ 723 (793)
+++.++...+|.|| +|||.|+..|...
T Consensus 724 ~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 724 GQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp SSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred hhhccCCHHHhcCCchhcCCCCcCCCCC
Confidence 99999999999999 9999998888643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-72 Score=661.77 Aligned_cols=661 Identities=27% Similarity=0.389 Sum_probs=569.4
Q ss_pred CCcccEEEcCCccCCCC-CchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccc--cccCCCC
Q 003813 35 LSLLKHLYISSVNLSKA-SDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPS--RLGNLTS 111 (793)
Q Consensus 35 l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~ 111 (793)
-.+++.|+|+++.+.+. ...+..+.+++.|+.++++.+.+..+++ .++++++|++|||++|.+.+.+|. .++++++
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 36899999999988762 1145568899999999999998876554 799999999999999999988888 9999999
Q ss_pred CCEEeCcCCcCccCCcccc-cCCCCCCEEEccCCccccccChhh--hcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcE
Q 003813 112 LKYLDLSFNQFNSVVPGWL-SKLNDLEFLSLQSNRLQGNISSLG--LENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS 188 (793)
Q Consensus 112 L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~i~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 188 (793)
|++|++++|.+.+..|..+ .++++|++|++++|.+++..+... +.++++|++|++++|. +.+..+. ..+++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVDV--SRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCBC--TTCTTCCE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCCc--ccCCcCCE
Confidence 9999999999998888766 899999999999999996554432 6899999999999998 7766654 88999999
Q ss_pred EEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEc
Q 003813 189 FSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL 268 (793)
Q Consensus 189 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 268 (793)
|++++|.+++.+|. ++.+ ++|++|++++|++.+..|..++.+++|++|++++|.+++.+|.. .+++|++|++
T Consensus 205 L~Ls~n~l~~~~~~-l~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L 276 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGDC-----SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276 (768)
T ss_dssp EECCSSCCCSCCCB-CTTC-----CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEEC
T ss_pred EECcCCcCCCCCcc-cccC-----CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEEC
Confidence 99999999998887 7766 99999999999999999999999999999999999999888765 8999999999
Q ss_pred cCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcc-cccCCCCCeEEeecCccc
Q 003813 269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLW-LQSQKKLNDLYISSTRIS 347 (793)
Q Consensus 269 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~i~ 347 (793)
++|.+++.+|...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|++.
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 9999998888854455699999999999999999999999999999999999998888876 899999999999999999
Q ss_pred cccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCc
Q 003813 348 AKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNH 427 (793)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~ 427 (793)
+.+|..+....++|++|++++|++.+.+|..... .....++.+++++|.+++.+|..+.. +++|+.|++++|.
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~p~~l~~----l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ---NPKNTLQELYLQNNGFTGKIPPTLSN----CSELVSLHLSFNY 429 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC---STTCCCCEEECCSSEEEEECCGGGGG----CTTCCEEECCSSE
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh---cccCCccEEECCCCccccccCHHHhc----CCCCCEEECcCCc
Confidence 9999988765559999999999999988843221 11457999999999999998876654 8999999999999
Q ss_pred ccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchh
Q 003813 428 FSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTW 507 (793)
Q Consensus 428 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 507 (793)
+++.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc--CCccch
Q 003813 508 MGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS--LGDEKI 585 (793)
Q Consensus 508 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~--~~~~~~ 585 (793)
+. .+++|++|++++|+++|.+|..++.+++|+.|++++|+++|.+|..+.....+................ ......
T Consensus 510 ~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 510 IG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp GG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred Hh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence 88 799999999999999999999999999999999999999999999988877665443222110000000 000000
Q ss_pred hhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcC
Q 003813 586 VEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQL 665 (793)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 665 (793)
.........+........++.+..++++.|.++|.+|..++.+++|++|||++|+++|.+|..++++++|+.|+|++|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence 00000011222333344556667789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCeEEcccCcccccCCCC-CccCCcCCccccCCCccCC
Q 003813 666 SGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGGSSFADNDLCGA 715 (793)
Q Consensus 666 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l~~~ 715 (793)
+|.+|..++++++|++||+|+|+++|.||.. ..+..+....+++|.+.|.
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 9999999999999999999999999999976 4455666677888877764
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-62 Score=571.64 Aligned_cols=604 Identities=21% Similarity=0.223 Sum_probs=445.9
Q ss_pred CCCCCCCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCcc
Q 003813 2 IPHQLGNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLS 81 (793)
Q Consensus 2 ip~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 81 (793)
||..+. +++++|++++|.++.++... |.++++|++|++++|.++++. +..++++++|++|++++|+++.+++..
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGGG--GGGGTTCSEEECCSSCCCCCC--TTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred cccccC--CCCcEEECCCCCCCCcCHHH--HhCCCcCcEEECCCCccCccC--HHHHhcccCcCEEECCCCccCccChhh
Confidence 566554 67888888888776554432 677788888888888887763 234567788888888888888887777
Q ss_pred CCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhc--CCC
Q 003813 82 SANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLE--NLT 159 (793)
Q Consensus 82 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~--~l~ 159 (793)
|+++++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..++++++|++|++++|.++ .++...+. .++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANS 171 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTC
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccc
Confidence 888888888888888887666677888888888888888887777777778888888888888877 34433343 457
Q ss_pred CCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCC-
Q 003813 160 SIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG- 238 (793)
Q Consensus 160 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~- 238 (793)
+|++|++++|. +.+..|..+..+.+|+.+++..+.+.+.....+... ...++|++|++++|.+.+..|..+..++.
T Consensus 172 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~ 248 (680)
T 1ziw_A 172 SLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE--LANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248 (680)
T ss_dssp EESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH--HTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred cccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHH--hhhccccEEEccCCcccccChhHhhccCcC
Confidence 78888888887 777777778888888888887777664433332211 11267788888888777777777766643
Q ss_pred -CCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEc
Q 003813 239 -LNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV 317 (793)
Q Consensus 239 -L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 317 (793)
|++|++++|.+++..|.+|+.+++|++|++++|.+.+..+. .|.++++|+.|++++|...+....
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~------------- 314 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISL------------- 314 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC-----------------
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhccccc-------------
Confidence 88888888877777777777777888888887777754444 677777777777776543321100
Q ss_pred cCccCCCCCC----cccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEE
Q 003813 318 RSCRLGPRFP----LWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIF 393 (793)
Q Consensus 318 ~~~~~~~~~~----~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l 393 (793)
..+| ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+....
T Consensus 315 ------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~---------------- 371 (680)
T 1ziw_A 315 ------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLT---------------- 371 (680)
T ss_dssp --------CCEECTTTTTTCTTCCEEECCSCCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEEC----------------
T ss_pred ------ccccccChhhcccCCCCCEEECCCCccCCCCh-hHhccccCCcEEECCCCchhhhhcc----------------
Confidence 0111 134556666666666666665333 3334456666666666554221110
Q ss_pred EcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCC-CCCCCCCCccEEEcc
Q 003813 394 DLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLP-MSIGTLSSLMSLNLR 472 (793)
Q Consensus 394 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~ 472 (793)
...+.+ ...++|+.|++++|++++..|.+|..+++|++|++++|.+++.+| ..+.++++|++|+++
T Consensus 372 ---~~~f~~----------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 372 ---NETFVS----------LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp ---TTTTGG----------GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred ---hhhhcc----------cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 000000 013679999999999999999999999999999999999987666 678899999999999
Q ss_pred CCccccccCccccCCCCCCEEeCCCCccc--ccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc
Q 003813 473 NNRLSGIIPTSFNNFTILEALDMGENELV--GNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550 (793)
Q Consensus 473 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 550 (793)
+|++.+..+..|..+++|+.|++++|.+. +.+|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 99999998999999999999999999886 56777776 7999999999999999887788999999999999999998
Q ss_pred cccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccC
Q 003813 551 GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQG 630 (793)
Q Consensus 551 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 630 (793)
+..+..+..- .......++.|+.|+|++|+++...+..|.++++
T Consensus 518 ~~~~~~~~~~------------------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 518 RLWKHANPGG------------------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp GGGSTTSTTS------------------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccchhhccCC------------------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 5433221100 0001223556799999999999555557999999
Q ss_pred CceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccccc-CCCCCCeEEcccCcccccCCC-CCccCCc
Q 003813 631 LQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS-NLSFLNYLNLSNNNLNGEIPS-STQLQSF 702 (793)
Q Consensus 631 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~-~~~~~~~ 702 (793)
|++|+|++|++++..+..|.++++|+.|++++|++++..|..+. .+++|+.+++++|++.|.|+. .+...+.
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 99999999999977777889999999999999999999998887 789999999999999999986 4444443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-59 Score=547.63 Aligned_cols=565 Identities=20% Similarity=0.199 Sum_probs=358.1
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEc
Q 003813 62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSL 141 (793)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 141 (793)
+++++|++++|.++++++..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 34555555555555555444555555555555555555444555555555555555555555443344555555555555
Q ss_pred cCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEcc
Q 003813 142 QSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLG 221 (793)
Q Consensus 142 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 221 (793)
++|.+. .++...|+++++|++|++++|. +.+..+..++++++|++|+++.|.+++..+..+... ..++|++|+++
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~~L~~L~L~ 179 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF---ANSSLKKLELS 179 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG---TTCEESEEECT
T ss_pred CCCccC-ccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhcc---ccccccEEECC
Confidence 555554 3332235555555555555554 444444555555555555555555554444433221 01455666666
Q ss_pred CcccccccccccCCCCCCCEEeCcCCcCCCCcchhhc---CCCCCCEEEccCCCCccccChhhhhcCCC--CcEEECCCC
Q 003813 222 SCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG---QIANLEYLDLSKNELNGTVSEIHFVNLTK--LVTFRANGN 296 (793)
Q Consensus 222 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L~l~~n 296 (793)
+|.+.+..|..++.+++|+.|+++++.+.+.....+. ..++|+.|++++|.+.+..+. .|.+++. |++|++++|
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECTTS
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECCCC
Confidence 6655555555555555566666555554422211111 234555666666555543333 4444433 555555555
Q ss_pred eeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCcccccc--------ChhHHhccccccEEEeeC
Q 003813 297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKI--------PRRFWNSIFQYWFLNISG 368 (793)
Q Consensus 297 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~--------~~~~~~~~~~L~~L~ls~ 368 (793)
.+.+..+..+..+++|++|++++|.+.+..|.++..+++|++|++++|...+.+ +...+..+++|
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L------- 331 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL------- 331 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC-------
T ss_pred CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC-------
Confidence 555555445555555555555555555555555566666666666655433211 11122233444
Q ss_pred ccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc--cCCCCccCC--CCCCE
Q 003813 369 NQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG--EIPDCWMNW--PRLRM 444 (793)
Q Consensus 369 n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l--~~L~~ 444 (793)
+.+++++|.+.+..+.. +..+++|+.|++++|.+.. ..+..|..+ ++|+.
T Consensus 332 ----------------------~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 332 ----------------------EHLNMEDNDIPGIKSNM----FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp ----------------------CEEECCSCCBCCCCTTT----TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred ----------------------CEEECCCCccCCCChhH----hccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 44444444444433322 3347888888888887532 233344433 58999
Q ss_pred EEccCCcccccCCCCCCCCCCccEEEccCCccccccC-ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCc
Q 003813 445 LNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP-TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSN 523 (793)
Q Consensus 445 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n 523 (793)
|++++|++++..|.+|..+++|++|++++|.+++.+| ..|.++++|++|++++|++.+..+..+. .+++|+.|++++|
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n 464 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRV 464 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTS
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccc
Confidence 9999999998888889999999999999999987665 6788899999999999998854444444 7889999999999
Q ss_pred ccc--ccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813 524 KFH--GDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK 601 (793)
Q Consensus 524 ~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (793)
.+. +.+|..+..+++|+.|++++|++++..|..+.++++|
T Consensus 465 ~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-------------------------------------- 506 (680)
T 1ziw_A 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-------------------------------------- 506 (680)
T ss_dssp CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred cccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc--------------------------------------
Confidence 886 5678888899999999999999987666666665554
Q ss_pred hhccceeEEEcccCcceeeCc--------cccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccc
Q 003813 602 SILNLVRGIDISKNNFSGEVP--------VEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSM 673 (793)
Q Consensus 602 ~~~~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 673 (793)
+.|++++|++++..+ ..+.++++|++|+|++|+++...+..|+++++|+.|+|++|++++..+..|
T Consensus 507 ------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 507 ------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp ------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 889999999986422 247899999999999999995545579999999999999999998888889
Q ss_pred cCCCCCCeEEcccCcccccCCCCC--ccCCcCCccccCC
Q 003813 674 SNLSFLNYLNLSNNNLNGEIPSST--QLQSFGGSSFADN 710 (793)
Q Consensus 674 ~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~~n 710 (793)
..+++|+.|++++|++++..|... .+..+....+.+|
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 999999999999999998776532 3445555556666
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-57 Score=522.91 Aligned_cols=542 Identities=19% Similarity=0.183 Sum_probs=383.1
Q ss_pred cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813 39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118 (793)
Q Consensus 39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 118 (793)
+.++.++..++.+|.. + -+++++|++++|.++++++..|.++++|++|++++|.+.+..|.+|.++++|++|+++
T Consensus 15 ~~~~c~~~~l~~iP~~---l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGT---L--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TEEECTTSCCSSCCTT---S--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEECCCCCcccCcCC---C--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 3566666666666542 2 1356777777777777766677777777777777777776667777777777777777
Q ss_pred CCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccc
Q 003813 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ 198 (793)
Q Consensus 119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 198 (793)
+|.+++..|..|+++++|++|++++|.++ .++...++++++|++|++++|. +.+..+..+..+++|+.|++++|.+++
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred CCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc
Confidence 77777766777777777777777777776 4433336777777777777776 554333333346677777777777666
Q ss_pred cchhHHhhhccccCCCcc--EEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCcc-
Q 003813 199 DISEILGIFSACVANELE--SLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG- 275 (793)
Q Consensus 199 ~~~~~~~~~~~~~~~~L~--~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~- 275 (793)
..+..++.+ ++|+ .|++++|.+.+..|..+.. .+|++|++++|. ..+..+..+.+++...+....+.+
T Consensus 168 ~~~~~~~~l-----~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 168 LSKEDMSSL-----QQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECHHHHHTT-----TTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred cChhhhhhh-----cccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccc
Confidence 666666665 6666 6777777777666655543 567777777775 344555555554444433222211
Q ss_pred ---ccChhhhhcCC--CCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCcccccc
Q 003813 276 ---TVSEIHFVNLT--KLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKI 350 (793)
Q Consensus 276 ---~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 350 (793)
.++...+..+. +|+.+++++|.+....+..+..+++|++|++++|.+. .+|.++..+++|++|++++|++.+..
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence 12222232222 3444444444444333333333444444444444333 33333444444444444444333221
Q ss_pred ChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc
Q 003813 351 PRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG 430 (793)
Q Consensus 351 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 430 (793)
|. .+..+++|+.|++++|.+.+
T Consensus 318 ~~----------------------------------------------------------~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 318 QI----------------------------------------------------------SASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp GG----------------------------------------------------------CGGGCTTCSEEECCSCSSCC
T ss_pred hh----------------------------------------------------------hhhccCcCCEEECCCCCccc
Confidence 11 12236788888888888876
Q ss_pred cCCC-CccCCCCCCEEEccCCcccccC--CCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchh
Q 003813 431 EIPD-CWMNWPRLRMLNLRNNNFTGSL--PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTW 507 (793)
Q Consensus 431 ~~~~-~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 507 (793)
.+|. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..|..+++|+.|++++|++.+..|..
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 5554 5888999999999999998765 778889999999999999999888999999999999999999998777666
Q ss_pred HHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccccc-C--ccccccccCccccCCCCCCccccccCCccc
Q 003813 508 MGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTI-P--RCINNFSAMATTDSSDQSNDIFYASLGDEK 584 (793)
Q Consensus 508 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 584 (793)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.. | ..+..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l------------------------ 475 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL------------------------ 475 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC------------------------
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC------------------------
Confidence 4557899999999999999888889999999999999999997632 2 334443
Q ss_pred hhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCc
Q 003813 585 IVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQ 664 (793)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 664 (793)
+.|+.|++++|++++.+|..|+++++|++|+|++|++++.+|+.+++++.| .|++++|+
T Consensus 476 --------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 476 --------------------GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp --------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred --------------------CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 445899999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCcccccCCCCCCeEEcccCcccccCCCCCccC
Q 003813 665 LSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 700 (793)
Q Consensus 665 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~ 700 (793)
+++.+|..+..+++|++|++++|+++|.|+..+...
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 570 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE 570 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHH
T ss_pred ccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHH
Confidence 999999999999999999999999999998654333
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-56 Score=527.31 Aligned_cols=561 Identities=20% Similarity=0.197 Sum_probs=396.1
Q ss_pred EEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcc-cccccCCCCCCEEeCc
Q 003813 40 HLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQI-PSRLGNLTSLKYLDLS 118 (793)
Q Consensus 40 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls 118 (793)
..+.++++++.+|. -.+++++|+|++|.++++.+..|.++++|++|+|++|...+.+ |.+|.++++|++|+|+
T Consensus 8 ~~dcs~~~L~~vP~------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSSCCCS------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCCCCCCCC------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 45666777777653 2356777777777777777777777777777777777544444 6677777777777777
Q ss_pred CCcCccCCcccccCCCCCCEEEccCCccccccCh-hhhcCCCCCcEEEcCCCCCCCCCC-cccccCCCCCcEEEccCCcc
Q 003813 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISS-LGLENLTSIQTLLLSGNDELGGKI-PTSFGRFCKLKSFSTGFTNL 196 (793)
Q Consensus 119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l 196 (793)
+|.+.+..|..|+++++|++|++++|.+.+.++. ..++++++|++|++++|. +.+.. +..++++++|+.|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcC
Confidence 7777777777777777777777777777754433 236777777777777776 54443 35677777777777777777
Q ss_pred cccchhHHhhhccccCCCccEEEccCcccccccccccCCCCC------CCEEeCcCCcCCCCcchhhcCC---CCCCEEE
Q 003813 197 SQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKG------LNFLDLSNTTMDGSIPLSLGQI---ANLEYLD 267 (793)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~ 267 (793)
++..+..+..+.. ++|+.|++++|.+.+..|..++.+++ |++|++++|.+++..+..+... ..++.+.
T Consensus 161 ~~~~~~~l~~l~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 161 FLVCEHELEPLQG---KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCCSGGGHHHHH---CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CeeCHHHcccccC---CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 7766666654422 57888888888887777776666555 8888888888877777666543 5677777
Q ss_pred ccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCC--cccccEEEccCccCCCCCCcccccCCCCCeEEeecCc
Q 003813 268 LSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVP--PFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTR 345 (793)
Q Consensus 268 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 345 (793)
++.+....... .+.+.......+.. .++++.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 238 l~~~~~~~~~~----------------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 238 LAHHIMGAGFG----------------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp CCSSCCBCSSS----------------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred ccccccccccc----------------ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence 76443321100 01111111111211 2345555555555555555566666777777777777
Q ss_pred cccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccC
Q 003813 346 ISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSK 425 (793)
Q Consensus 346 i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~ 425 (793)
+.+..|.. +..+++|++|++++|.+.+..| ..+..+++|+.|++++
T Consensus 302 i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~---------------------------------~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 302 INKIADEA-FYGLDNLQVLNLSYNLLGELYS---------------------------------SNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEECTTT-TTTCSSCCEEEEESCCCSCCCS---------------------------------CSCSSCTTCCEEECCS
T ss_pred CCCCChHH-hcCCCCCCEEECCCCCCCccCH---------------------------------HHhcCCCCCCEEECCC
Confidence 66544433 3445666666666665543333 1233478899999999
Q ss_pred CcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCc
Q 003813 426 NHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIP 505 (793)
Q Consensus 426 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 505 (793)
|.+++..+..|.++++|++|++++|.+++. ..+++|+.|++++|+++. +|.. ..+++.|++++|++.+.-.
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDI 418 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTT
T ss_pred CCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCch
Confidence 999988888899999999999999999842 237899999999999984 4433 5689999999999984322
Q ss_pred hhHHhhcccCcEEEccCccccccCCc-cccCCCCcCEEEcccCccccccC-----ccccccccCccccCCCCCCcccccc
Q 003813 506 TWMGERFSRLIILNLRSNKFHGDFPI-QLCRLASLQILDVAYNNLSGTIP-----RCINNFSAMATTDSSDQSNDIFYAS 579 (793)
Q Consensus 506 ~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~~~~~~~~~~~~~~~ 579 (793)
......+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+ ..+.+
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-------------------- 478 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG-------------------- 478 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC--------------------
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC--------------------
Confidence 23333789999999999999965443 45668999999999999974332 22322
Q ss_pred CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEE
Q 003813 580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLD 659 (793)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 659 (793)
++.|+.|||++|++++.+|..|.++++|++|+|++|++++..|..+. ++|+.||
T Consensus 479 ------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~ 532 (844)
T 3j0a_A 479 ------------------------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD 532 (844)
T ss_dssp ------------------------BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEE
T ss_pred ------------------------cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEE
Confidence 45568999999999999999999999999999999999987777766 8999999
Q ss_pred CCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCCCC-CCCC
Q 003813 660 FSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAPLP-NCTK 722 (793)
Q Consensus 660 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~-~c~~ 722 (793)
|++|++++.+|..|. +|+.+++++|++.|.|+..+...++ ..++ .++|.+.. .|..
T Consensus 533 Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~~~~----~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 533 ISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWL----NHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp EEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHHHHH----HHTTTTTCCCGGGCCCSS
T ss_pred CCCCcCCCCChhHhC---CcCEEEecCCCcccccccHHHHHHH----HhcCcccccccccCccCC
Confidence 999999999998764 7899999999999999865433332 1223 55665443 5643
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-56 Score=511.75 Aligned_cols=545 Identities=21% Similarity=0.197 Sum_probs=386.3
Q ss_pred cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813 39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118 (793)
Q Consensus 39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 118 (793)
++++.++++++.+|.. + .+++++|++++|+++++++..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~---~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD---I--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTTSCCSSCCTT---S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEccCCCcccCCCC---C--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 4566777766666542 1 2567777777777777776667777777777777777776666677777777777777
Q ss_pred CCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCccc
Q 003813 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLS 197 (793)
Q Consensus 119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~ 197 (793)
+|.+++..|..|+++++|++|++++|.+. .++...++++++|++|++++|. +.+ .+|..++++++|++|++++|.++
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcce
Confidence 77777766777777777777777777776 4443336777777777777776 443 55777777777777777777666
Q ss_pred ccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCC-CCcchhhcCCCCCCEEEccCCCCccc
Q 003813 198 QDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMD-GSIPLSLGQIANLEYLDLSKNELNGT 276 (793)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~ 276 (793)
+..+..++.+... ...+++|++++|.+.+..+..+... +|++|++++|.++ +..|..+++++.|+.+++..+.+.+.
T Consensus 167 ~~~~~~~~~l~~L-~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 167 TITVNDLQFLREN-PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp EECTTTTHHHHHC-TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ecChhhhhhhhcc-ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 6555555544100 0114478888887766655555444 7778888877775 35566777777777777755444311
Q ss_pred c-----ChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEc-cCccCCCCCCcccccCCCCCeEEeecCcccccc
Q 003813 277 V-----SEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV-RSCRLGPRFPLWLQSQKKLNDLYISSTRISAKI 350 (793)
Q Consensus 277 ~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 350 (793)
. +...+.++. ...++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +
T Consensus 245 ~~l~~~~~~~~~~l~----------------------~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l 300 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLC----------------------DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-L 300 (606)
T ss_dssp CCCSCCCGGGGTTGG----------------------GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-C
T ss_pred CcccccChHHhhhhh----------------------hccHhheeccccccccccccc-cccCCCCCEEEecCccchh-h
Confidence 0 000111111 012344444 33344444444 5555566666666655533 3
Q ss_pred ChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc
Q 003813 351 PRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG 430 (793)
Q Consensus 351 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 430 (793)
| .+..+++|+.|++++|.+ +.+|.+ .+++|+.|++++|...+
T Consensus 301 ~--~l~~~~~L~~L~l~~n~l-~~lp~~-----------------------------------~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 301 E--DVPKHFKWQSLSIIRCQL-KQFPTL-----------------------------------DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp C--CCCTTCCCSEEEEESCCC-SSCCCC-----------------------------------CCSSCCEEEEESCSSCE
T ss_pred h--hccccccCCEEEcccccC-cccccC-----------------------------------CCCccceeeccCCcCcc
Confidence 3 222334445555554444 333321 26788888888886554
Q ss_pred cCCCCccCCCCCCEEEccCCccccc--CCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhH
Q 003813 431 EIPDCWMNWPRLRMLNLRNNNFTGS--LPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWM 508 (793)
Q Consensus 431 ~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 508 (793)
.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|...
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence 43 567888999999999988865 37778888999999999999885 55788889999999999999987666344
Q ss_pred HhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccc-ccCccccccccCccccCCCCCCccccccCCccchhh
Q 003813 509 GERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG-TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVE 587 (793)
Q Consensus 509 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 587 (793)
+..+++|++|++++|++.+..|..+..+++|++|++++|++++ .+|..+.++++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L------------------------ 475 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL------------------------ 475 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC------------------------
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC------------------------
Confidence 4478999999999999998888899999999999999999987 467777766655
Q ss_pred hhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCC
Q 003813 588 DALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSG 667 (793)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 667 (793)
+.|++++|++++.+|..++++++|++|++++|++++.+|..|+++++|+.|++++|+++
T Consensus 476 --------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~- 534 (606)
T 3vq2_A 476 --------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE- 534 (606)
T ss_dssp --------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-
T ss_pred --------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-
Confidence 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCC-CCCeEEcccCcccccCCCCCccCCc
Q 003813 668 YIPQSMSNLS-FLNYLNLSNNNLNGEIPSSTQLQSF 702 (793)
Q Consensus 668 ~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~~~~~~~ 702 (793)
.+|..+..++ +|++|++++|++.|.||..+...++
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 6787799997 5999999999999999976544444
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-55 Score=502.21 Aligned_cols=535 Identities=18% Similarity=0.169 Sum_probs=369.2
Q ss_pred cEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEE
Q 003813 13 QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD 92 (793)
Q Consensus 13 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 92 (793)
+.++.++..++.+|..++ +++++|++++|.+++++ +..+.++++|++|++++|+++.+.+..|.++++|++|+
T Consensus 15 ~~~~c~~~~l~~iP~~l~-----~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-----TTCCEEECTTCCCSEEC--TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ceEECCCCCcccCcCCCC-----CcCcEEEccCCccCcCC--hhHhccCccceEEECCCCccceeChhhccCccccCeee
Confidence 467777777776666532 36788888888887762 33567788888888888888877777788888888888
Q ss_pred CcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCC
Q 003813 93 LSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDEL 172 (793)
Q Consensus 93 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~ 172 (793)
+++|.+++..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ ++...+..+++|++|++++|. +
T Consensus 88 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l 165 (606)
T 3t6q_A 88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNA-I 165 (606)
T ss_dssp CTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSC-C
T ss_pred CCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCc-c
Confidence 88888877777778888888888888888877666777788888888888888773 321124557888888888877 6
Q ss_pred CCCCcccccCCCCCc--EEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcC-
Q 003813 173 GGKIPTSFGRFCKLK--SFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTM- 249 (793)
Q Consensus 173 ~~~~~~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l- 249 (793)
.+..+..++.+++|+ .+++++|.+++..+..+.. .+|++|++++|.. .+..+..+.+++...+....+
T Consensus 166 ~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~------~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS------AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT------CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCT
T ss_pred cccChhhhhhhcccceeEEecCCCccCccChhHhhh------ccccccccCCchh---HHHHhhhccccchhheechhhc
Confidence 666777777777777 7788888877766655443 4678888887752 233333333333222221111
Q ss_pred ----CCCcchhhcCCC--CCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCC
Q 003813 250 ----DGSIPLSLGQIA--NLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLG 323 (793)
Q Consensus 250 ----~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 323 (793)
....+..+..+. +|+.|++++|.+++ ++...|.++++|++|++++|.+. ..+..+..+++|++|++++|.+.
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~ 314 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcC
Confidence 112233333333 67788888887764 44446777888888888888776 45566777788888888888888
Q ss_pred CCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccccc
Q 003813 324 PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGS 403 (793)
Q Consensus 324 ~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~ 403 (793)
+..|..+..+++|++|++++|.+.+.++...+..
T Consensus 315 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---------------------------------------------- 348 (606)
T 3t6q_A 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN---------------------------------------------- 348 (606)
T ss_dssp BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT----------------------------------------------
T ss_pred cCchhhhhccCcCCEEECCCCCcccccchhhhhc----------------------------------------------
Confidence 7778888888899999988888776555543333
Q ss_pred ccchhhcccCCCCCccEEEccCCcccccC--CCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccC
Q 003813 404 IFHLICQGENFSKNIEFFQLSKNHFSGEI--PDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP 481 (793)
Q Consensus 404 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 481 (793)
+++|++|++++|.+++.. +..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+
T Consensus 349 -----------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 349 -----------LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp -----------CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred -----------cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 345555555555555443 4555666666666666666666666666666666666666666665544
Q ss_pred c-cccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcccccc---CCccccCCCCcCEEEcccCccccccCccc
Q 003813 482 T-SFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGD---FPIQLCRLASLQILDVAYNNLSGTIPRCI 557 (793)
Q Consensus 482 ~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 557 (793)
. .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..+
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 3 356666666666666666654454444 466666666666666542 23456777778888888888777667666
Q ss_pred cccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeecc
Q 003813 558 NNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFS 637 (793)
Q Consensus 558 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 637 (793)
.+++.| +.|||++|++++.+|..+.+++.| .|+++
T Consensus 497 ~~l~~L--------------------------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 497 TSLKMM--------------------------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp TTCTTC--------------------------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred ccccCC--------------------------------------------CEEECCCCccCcCChhHhCccccc-EEECc
Confidence 655544 678888888888888889999999 99999
Q ss_pred CCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813 638 YNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP 670 (793)
Q Consensus 638 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 670 (793)
+|++++.+|+.++.+++|+.|++++|.+++..+
T Consensus 532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999998888889999999999999999987554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-54 Score=494.47 Aligned_cols=530 Identities=17% Similarity=0.175 Sum_probs=426.0
Q ss_pred CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEE
Q 003813 12 LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTL 91 (793)
Q Consensus 12 L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 91 (793)
-++++.+++.++.+|..+ .+++++|++++|.+++++. ..+.++++|++|++++|.++++++..|.++++|++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-----~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-----PSSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-----CTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCceEccCCCcccCCCCC-----CCCcCEEECCCCCcCEeCh--hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 467999999998888764 2789999999999988743 357899999999999999999988899999999999
Q ss_pred ECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCcEEEcCCCC
Q 003813 92 DLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLLLSGND 170 (793)
Q Consensus 92 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L~~n~ 170 (793)
++++|.+++..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|.. ++++++|++|++++|.
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCc
Confidence 999999998889999999999999999999999887889999999999999999985 56766 9999999999999998
Q ss_pred CCCCCCcccccCCCCCc----EEEccCCcccccchhHHhhhccccCCCccEEEccCcccc-cccccccCCCCCCCEEeCc
Q 003813 171 ELGGKIPTSFGRFCKLK----SFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF-GHMTNQLGRFKGLNFLDLS 245 (793)
Q Consensus 171 ~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~ 245 (793)
+.+..+..++.+.+|+ .++++.|.+++..+..+.. .+|++|++++|.+. +..|..+++++.|+.+++.
T Consensus 165 -l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 165 -IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp -CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred -ceecChhhhhhhhccccccceeeccCCCcceeCcccccC------ceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 8888888787776655 8999999998655444332 57999999999886 5677788899999998886
Q ss_pred CCcCCC------CcchhhcCCC--CCCEEEc-cCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEE
Q 003813 246 NTTMDG------SIPLSLGQIA--NLEYLDL-SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLG 316 (793)
Q Consensus 246 ~n~l~~------~~~~~l~~l~--~L~~L~L-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 316 (793)
.+.+.+ ..+..+..+. .++.+++ ..|.+.+.++. +..+++|+.+++++|.+..
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~---------------- 299 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY---------------- 299 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC----------------
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh----------------
Confidence 554432 1222232222 4666777 66777776664 7777888888877776642
Q ss_pred ccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcc
Q 003813 317 VRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLS 396 (793)
Q Consensus 317 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls 396 (793)
+| ++..+++|++|++++|.+ +.+|. + .+++|+.|++++|...+.++
T Consensus 300 ---------l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~~-------------------- 345 (606)
T 3vq2_A 300 ---------LE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISFK-------------------- 345 (606)
T ss_dssp ---------CC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEECC--------------------
T ss_pred ---------hh-hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccchh--------------------
Confidence 22 344455566666666655 44552 2 45666666666664332221
Q ss_pred cCcccccccchhhcccCCCCCccEEEccCCccccc--CCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCC
Q 003813 397 NNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE--IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNN 474 (793)
Q Consensus 397 ~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 474 (793)
+..+++|+.|++++|.+++. .|..+..+++|++|++++|.+++ +|..+..+++|++|++++|
T Consensus 346 ---------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 346 ---------------KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409 (606)
T ss_dssp ---------------CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTS
T ss_pred ---------------hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCC
Confidence 12367888888888888866 37788889999999999999885 5678888999999999999
Q ss_pred ccccccC-ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccc-cCCccccCCCCcCEEEcccCccccc
Q 003813 475 RLSGIIP-TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHG-DFPIQLCRLASLQILDVAYNNLSGT 552 (793)
Q Consensus 475 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ 552 (793)
++.+..| ..+.++++|++|++++|++.+..|..+. .+++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 9998877 6888999999999999999877777666 78999999999999987 4788899999999999999999988
Q ss_pred cCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCc
Q 003813 553 IPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQ 632 (793)
Q Consensus 553 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 632 (793)
.|..+.++++| +.|++++|++++.+|..+.++++|+
T Consensus 489 ~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 489 SWGVFDTLHRL--------------------------------------------QLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp CTTTTTTCTTC--------------------------------------------CEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred ChhhhcccccC--------------------------------------------CEEECCCCcCCCcCHHHccCCCcCC
Confidence 88777776655 7899999999999999999999999
Q ss_pred eeeccCCcccccCCccccCcC-CCCEEECCCCcCCCCCc
Q 003813 633 SLNFSYNLFTGRIPDNIGVMR-SIESLDFSANQLSGYIP 670 (793)
Q Consensus 633 ~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p 670 (793)
+|++++|+++ .+|..+..++ +|+.|++++|.+.+..+
T Consensus 525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999 7888899997 69999999999987554
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-52 Score=494.45 Aligned_cols=534 Identities=19% Similarity=0.205 Sum_probs=426.7
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccC-CcccccCCCCCCEEEccC
Q 003813 65 KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQS 143 (793)
Q Consensus 65 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~ 143 (793)
+..+.++++++.+|. -.++|++|||++|.+++..|.+|.++++|++|++++|...+. .|..|.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 578889999999985 347999999999999988899999999999999999965544 488899999999999999
Q ss_pred CccccccChhhhcCCCCCcEEEcCCCCCCCCCCccc--ccCCCCCcEEEccCCcccccch-hHHhhhccccCCCccEEEc
Q 003813 144 NRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTS--FGRFCKLKSFSTGFTNLSQDIS-EILGIFSACVANELESLDL 220 (793)
Q Consensus 144 n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~L~~L~L 220 (793)
|.+.+..|.. |+++++|++|++++|. +.+..+.. ++++++|++|++++|.+++..+ ..++.+ ++|++|++
T Consensus 83 N~l~~~~p~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L-----~~L~~L~L 155 (844)
T 3j0a_A 83 SKIYFLHPDA-FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL-----NSLKSIDF 155 (844)
T ss_dssp CCCCEECTTS-SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC-----SSCCEEEE
T ss_pred CcCcccCHhH-ccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhC-----CCCCEEEC
Confidence 9999544554 9999999999999998 77766654 8999999999999999887654 466666 88999999
Q ss_pred cCcccccccccccCCC--CCCCEEeCcCCcCCCCcchhhcCCCC------CCEEEccCCCCccccChhhhh--cCCCCcE
Q 003813 221 GSCQIFGHMTNQLGRF--KGLNFLDLSNTTMDGSIPLSLGQIAN------LEYLDLSKNELNGTVSEIHFV--NLTKLVT 290 (793)
Q Consensus 221 ~~n~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~--~l~~L~~ 290 (793)
++|.+.+..+..++.+ ++|+.|++++|.+.+..|..++.+++ |++|++++|.+.+.++..... ..++++.
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 9998888888878776 88999999999988888777776665 889999888887766653222 2245666
Q ss_pred EECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCccccc--CCCCCeEEeecCccccccChhHHhccccccEEEeeC
Q 003813 291 FRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQS--QKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISG 368 (793)
Q Consensus 291 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~ 368 (793)
+.++.+..... ...+.+....+..+.. .++|++|++++|.+.+..+.. +..+++|+.|++++
T Consensus 236 L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 236 LILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAY 299 (844)
T ss_dssp EECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEES
T ss_pred eeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCC
Confidence 66664433211 1122222222333444 378999999999998755443 45577787888777
Q ss_pred ccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEcc
Q 003813 369 NQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLR 448 (793)
Q Consensus 369 n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 448 (793)
|++.+..|. .+..+++|+.|++++|.+++..|..|..+++|++|+++
T Consensus 300 n~i~~~~~~---------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 300 NKINKIADE---------------------------------AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCCEECTT---------------------------------TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CcCCCCChH---------------------------------HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 777654441 23347899999999999998889999999999999999
Q ss_pred CCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcccccc
Q 003813 449 NNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGD 528 (793)
Q Consensus 449 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 528 (793)
+|++++..+..|..+++|++|++++|.+++.. .+++|+.|++++|+++ .+|.. ..+++.|++++|++++.
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENL 416 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSS
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccC
Confidence 99999888888999999999999999998532 3889999999999998 77754 46799999999999964
Q ss_pred C-CccccCCCCcCEEEcccCccccccCc-cccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccc
Q 003813 529 F-PIQLCRLASLQILDVAYNNLSGTIPR-CINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNL 606 (793)
Q Consensus 529 ~-p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
. +..+..+++|+.|++++|++++..+. .+.. ++.
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------------------~~~ 452 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--------------------------------------------NPS 452 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS--------------------------------------------CTT
T ss_pred chhhhhhcCCccceeeCCCCccccccccccccc--------------------------------------------CCc
Confidence 2 23456899999999999999864432 1222 344
Q ss_pred eeEEEcccCcce-----eeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCe
Q 003813 607 VRGIDISKNNFS-----GEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNY 681 (793)
Q Consensus 607 L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 681 (793)
|+.|++++|.++ +..|..|.++++|++|+|++|++++.+|..|+++++|+.|+|++|++++..|..+. ++|++
T Consensus 453 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~ 530 (844)
T 3j0a_A 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI 530 (844)
T ss_dssp CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred cccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence 688999999997 45567789999999999999999999999999999999999999999988887776 89999
Q ss_pred EEcccCcccccCCCCCccCCcCCccccCC-CccCCC
Q 003813 682 LNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAP 716 (793)
Q Consensus 682 L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~ 716 (793)
||+++|+++|.+|.. +..+....+.|| ..|..+
T Consensus 531 L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 531 LDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred EECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 999999999999875 445666667777 556544
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-51 Score=466.50 Aligned_cols=518 Identities=20% Similarity=0.196 Sum_probs=345.3
Q ss_pred cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813 39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118 (793)
Q Consensus 39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 118 (793)
++++.++.+++.+|.. + .+++++|++++|.++++++..|.++++|++|++++|.+++..+.+|.++++|++|+++
T Consensus 10 ~~~~c~~~~l~~ip~~---l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 10 ITYQCMELNFYKIPDN---L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TEEECCSSCCSSCCSS---S--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEeCCCCccccCCC---c--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 4455566556655432 1 2456777777777776666667777777777777777766556667777777777777
Q ss_pred CCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCccc
Q 003813 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLS 197 (793)
Q Consensus 119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~ 197 (793)
+|.+++..|..|+++++|++|++++|.++ .++...++++++|++|++++|. +.+ .+|..++++++|++|++++|.++
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred CCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccc
Confidence 77776666666777777777777777766 4444336677777777777776 443 45666666666666666666666
Q ss_pred ccchhHHhhhccccCCCc----cEEEccCcccccccccccCCCCCCCEEeCcCCcCCC-CcchhhcCCCCCCEEEccCCC
Q 003813 198 QDISEILGIFSACVANEL----ESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG-SIPLSLGQIANLEYLDLSKNE 272 (793)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~ 272 (793)
+..+..++.+ ++| +.+++++|.+.+..+..+... +|++|++++|.... ..+..+..++.++.+.+....
T Consensus 163 ~~~~~~~~~l-----~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 163 SIYCTDLRVL-----HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp EECGGGGHHH-----HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred eecHHHccch-----hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 6555555555 455 677777777776666666554 67777777664332 334555566666655543322
Q ss_pred CccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcc--cccEEEccCc-cCCCCCCcccccCCCCCeEEeecCccccc
Q 003813 273 LNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPF--QLTGLGVRSC-RLGPRFPLWLQSQKKLNDLYISSTRISAK 349 (793)
Q Consensus 273 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~i~~~ 349 (793)
+.. ...++. .....+..+. .++.+++..+ .+.+..|.++..+
T Consensus 237 ~~~---------~~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l---------------- 281 (570)
T 2z63_A 237 FRN---------EGNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL---------------- 281 (570)
T ss_dssp CCC---------CSSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG----------------
T ss_pred ccC---------chhhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcCc----------------
Confidence 210 000000 0001111111 1233333333 2223333334444
Q ss_pred cChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCccc
Q 003813 350 IPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFS 429 (793)
Q Consensus 350 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 429 (793)
++|+.|++++|.+.+ +|. .+..+ +|+.|++++|.+.
T Consensus 282 ---------~~L~~L~l~~~~l~~-l~~---------------------------------~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 282 ---------TNVSSFSLVSVTIER-VKD---------------------------------FSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp ---------TTCSEEEEESCEECS-CCB---------------------------------CCSCC-CCSEEEEESCBCS
T ss_pred ---------CcccEEEecCccchh-hhh---------------------------------hhccC-CccEEeeccCccc
Confidence 444444444444331 221 11123 6677777777766
Q ss_pred ccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCcccccc--CccccCCCCCCEEeCCCCcccccCchh
Q 003813 430 GEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGII--PTSFNNFTILEALDMGENELVGNIPTW 507 (793)
Q Consensus 430 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~ 507 (793)
.+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+.++++|++|++++|.+.+ +|..
T Consensus 318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~ 391 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391 (570)
T ss_dssp -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE
T ss_pred -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc
Confidence 3443 3567788888888877765554 56778888888888877654 5677788888888888888874 4444
Q ss_pred HHhhcccCcEEEccCccccccCC-ccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchh
Q 003813 508 MGERFSRLIILNLRSNKFHGDFP-IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIV 586 (793)
Q Consensus 508 ~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 586 (793)
+. .+++|++|++++|++.+..| ..+..+++|++|++++|++.+..|..+.++++|
T Consensus 392 ~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------------------- 447 (570)
T 2z63_A 392 FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL----------------------- 447 (570)
T ss_dssp EE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-----------------------
T ss_pred cc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-----------------------
Confidence 43 67888888888888886655 467788888888888888887777766665554
Q ss_pred hhhhhhhccchhhhhhhccceeEEEcccCcce-eeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcC
Q 003813 587 EDALLVMKGFLVEYKSILNLVRGIDISKNNFS-GEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQL 665 (793)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 665 (793)
+.|++++|.++ +.+|..+..+++|++|++++|++++..|..|+.+++|+.|++++|++
T Consensus 448 ---------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 448 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ---------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ---------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 78889999887 57889999999999999999999998899999999999999999999
Q ss_pred CCCCcccccCCCCCCeEEcccCcccccCCCCCcc
Q 003813 666 SGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQL 699 (793)
Q Consensus 666 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 699 (793)
++..|..|..+++|++|++++|+++|.||..+.+
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 9998899999999999999999999999986544
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-49 Score=449.67 Aligned_cols=516 Identities=20% Similarity=0.202 Sum_probs=367.4
Q ss_pred CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEE
Q 003813 12 LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTL 91 (793)
Q Consensus 12 L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 91 (793)
.+.++.++.+++.+|..+ .+++++|++++|.+++++. ..+.++++|++|++++|+++++++..|+++++|++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-----~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-----CSSCCEEECCSCCCCEECT--TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCccccCCCc-----cccccEEEccCCccCccCh--hHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence 356777777777666543 2478888888888877632 246788888888888888888887778888888888
Q ss_pred ECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCcEEEcCCCC
Q 003813 92 DLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLLLSGND 170 (793)
Q Consensus 92 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L~~n~ 170 (793)
++++|.+++..|.+|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|.. ++++++|++|++++|.
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred eCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCc
Confidence 888888887667788888888888888888887666568888888888888888874 35655 8888888888888887
Q ss_pred CCCCCCcccccCCCCC----cEEEccCCcccccchhHHhhhccccCCCccEEEccCcccc-cccccccCCCCCCCEEeCc
Q 003813 171 ELGGKIPTSFGRFCKL----KSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIF-GHMTNQLGRFKGLNFLDLS 245 (793)
Q Consensus 171 ~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~ 245 (793)
+.+..+..++.+++| +.++++.|.+.+..+..+.. .+|+.|++++|... ...+..+..++.++.+.+.
T Consensus 161 -l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~------~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 161 -IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE------IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp -CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred -cceecHHHccchhccchhhhhcccCCCCceecCHHHhcc------CcceeEecccccccccchhhhhcCccccceeeec
Confidence 777777777777777 78888888887766655443 36888888887432 2344556677777766654
Q ss_pred CCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCC--CCcEEECCCC-eeeeecCCCCCCcccccEEEccCccC
Q 003813 246 NTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT--KLVTFRANGN-SLIFKINPNWVPPFQLTGLGVRSCRL 322 (793)
Q Consensus 246 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~~~~ 322 (793)
...+... .+++. +... .+..++ .++.++++++ .+.+..+..+..+++|+.+++++|.+
T Consensus 234 ~~~~~~~--------~~l~~--~~~~---------~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 234 LGEFRNE--------GNLEK--FDKS---------ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294 (570)
T ss_dssp EEECCCC--------SSCEE--CCTT---------TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred cccccCc--------hhhhh--cchh---------hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence 3322210 11110 1111 111111 1333444444 33444444455555566666666555
Q ss_pred CCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccc
Q 003813 323 GPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSG 402 (793)
Q Consensus 323 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ 402 (793)
. .+|.++..+ +|++|++++|.+. .+|.. .
T Consensus 295 ~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~--------------------------------------------- 323 (570)
T 2z63_A 295 E-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---K--------------------------------------------- 323 (570)
T ss_dssp C-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---B---------------------------------------------
T ss_pred h-hhhhhhccC-CccEEeeccCccc-ccCcc---c---------------------------------------------
Confidence 4 466666666 7777777777765 23321 1
Q ss_pred cccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccC--CCCCCCCCCccEEEccCCcccccc
Q 003813 403 SIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSL--PMSIGTLSSLMSLNLRNNRLSGII 480 (793)
Q Consensus 403 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~ 480 (793)
+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..
T Consensus 324 ------------l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 324 ------------LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp ------------CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred ------------ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence 34555555555555544443 45677777777777776443 556667778888888888877655
Q ss_pred CccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc-cccCccccc
Q 003813 481 PTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS-GTIPRCINN 559 (793)
Q Consensus 481 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~ 559 (793)
+. +..+++|+.|++++|.+.+..|...+..+++|++|++++|++.+..|..+..+++|++|++++|++. +.+|..+..
T Consensus 390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 44 7788888888888888876555444447888888888888888888888888999999999999987 567877766
Q ss_pred cccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCC
Q 003813 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYN 639 (793)
Q Consensus 560 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 639 (793)
+++| +.|++++|++++..|..+.++++|++|++++|
T Consensus 469 l~~L--------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 469 LRNL--------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp CTTC--------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccCC--------------------------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 6555 78999999999888999999999999999999
Q ss_pred cccccCCccccCcCCCCEEECCCCcCCCCCcc
Q 003813 640 LFTGRIPDNIGVMRSIESLDFSANQLSGYIPQ 671 (793)
Q Consensus 640 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 671 (793)
++++..|..|+++++|+.|++++|.+++..|.
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99988888899999999999999999988764
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-49 Score=449.44 Aligned_cols=489 Identities=18% Similarity=0.216 Sum_probs=300.3
Q ss_pred EEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcc
Q 003813 67 LKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRL 146 (793)
Q Consensus 67 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 146 (793)
.+.+++.++.+|+..+ ++|++|++++|.+++..|.+|.++++|++|++++|++++..|..|+++++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 3444455555544211 3455555555555544444555555555555555555554445555555555555555555
Q ss_pred ccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCcccccch-hHHhhhccccCCCccEEEccCcc
Q 003813 147 QGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLSQDIS-EILGIFSACVANELESLDLGSCQ 224 (793)
Q Consensus 147 ~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~L~~L~L~~n~ 224 (793)
+ .++...|+++++|++|++++|. +.+ ..|..++++++|++|++++|.+.+.++ ..+..+ ++|++|++++|+
T Consensus 87 ~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~L~~n~ 159 (549)
T 2z81_A 87 S-SLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-----TSLNELEIKALS 159 (549)
T ss_dssp C-SCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-----CEEEEEEEEETT
T ss_pred C-ccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcc-----cccCeeeccCCc
Confidence 5 3333335555555555555554 332 233444444444444444443222222 223322 455555555555
Q ss_pred cccccccccCCCCCCCEEeCcCCcCCCCcchh-hcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecC
Q 003813 225 IFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLS-LGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKIN 303 (793)
Q Consensus 225 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 303 (793)
+.+..|..++.+++|++|++++|.+.. +|.. +..+++|++|++++|++++....
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------------ 214 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFS------------------------ 214 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCC------------------------
T ss_pred ccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCcccccccc------------------------
Confidence 555555555555555555555555542 2222 23455555555555555431100
Q ss_pred CCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHH---hccccccEEEeeCccccccCCCCCC
Q 003813 304 PNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFW---NSIFQYWFLNISGNQMYGGVPKFDS 380 (793)
Q Consensus 304 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~---~~~~~L~~L~ls~n~l~~~~~~~~~ 380 (793)
.......+++|+.|++++|.+.+..+..+. ..+++++.+++++|.+.+... +..
T Consensus 215 ----------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~~ 271 (549)
T 2z81_A 215 ----------------------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-FNP 271 (549)
T ss_dssp ----------------------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-CCC
T ss_pred ----------------------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-ccc
Confidence 000011234455555555555443333222 234455566666655543211 000
Q ss_pred CCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCccccc-----CCCCccCCCCCCEEEccCCccccc
Q 003813 381 PSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE-----IPDCWMNWPRLRMLNLRNNNFTGS 455 (793)
Q Consensus 381 ~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~ 455 (793)
.....+..+.+++.|++.++.+... .+..+...++|++|++++|+++ .
T Consensus 272 --------------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ 324 (549)
T 2z81_A 272 --------------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324 (549)
T ss_dssp --------------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-C
T ss_pred --------------------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-c
Confidence 0001122356677777776655422 1112233568899999999987 5
Q ss_pred CCCCC-CCCCCccEEEccCCccccccC---ccccCCCCCCEEeCCCCcccccCch--hHHhhcccCcEEEccCccccccC
Q 003813 456 LPMSI-GTLSSLMSLNLRNNRLSGIIP---TSFNNFTILEALDMGENELVGNIPT--WMGERFSRLIILNLRSNKFHGDF 529 (793)
Q Consensus 456 ~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~ 529 (793)
+|..+ ..+++|++|++++|++++..| ..+..+++|++|++++|+++ .++. ..+..+++|++|++++|+++ .+
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 402 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PM 402 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence 66655 568899999999999987664 34778899999999999987 3442 33447899999999999999 67
Q ss_pred CccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeE
Q 003813 530 PIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG 609 (793)
Q Consensus 530 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 609 (793)
|..+..+++|++|++++|+++ .+|..+ .+.|+.
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~-~l~~~~----------------------------------------------~~~L~~ 435 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCI----------------------------------------------PQTLEV 435 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCS-CCCTTS----------------------------------------------CTTCSE
T ss_pred ChhhcccccccEEECCCCCcc-cccchh----------------------------------------------cCCceE
Confidence 888889999999999999987 333221 124689
Q ss_pred EEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcc
Q 003813 610 IDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL 689 (793)
Q Consensus 610 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 689 (793)
||+++|++++.+ ..+++|++|+|++|+++ .+|+ .+.+++|+.|+|++|++++.+|..+..+++|++|++++|++
T Consensus 436 L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 436 LDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred EECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 999999998643 57899999999999999 7887 57899999999999999999999999999999999999999
Q ss_pred cccCCC
Q 003813 690 NGEIPS 695 (793)
Q Consensus 690 ~g~ip~ 695 (793)
+|.||.
T Consensus 510 ~~~~~~ 515 (549)
T 2z81_A 510 DCSCPR 515 (549)
T ss_dssp CCCHHH
T ss_pred cCCCcc
Confidence 999984
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2e-47 Score=442.08 Aligned_cols=548 Identities=22% Similarity=0.202 Sum_probs=383.2
Q ss_pred cEEEcCCccCCCCCchhHhhCCC-CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeC
Q 003813 39 KHLYISSVNLSKASDSLLVINSL-PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117 (793)
Q Consensus 39 ~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 117 (793)
++.+.++-+++.+|.. + +++++|+|++|+|+++++.+|.++++|++|||++|.|+++.+.+|.++++|++|+|
T Consensus 34 ~~~~c~~~~l~~vP~~------lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~L 107 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDN------LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 107 (635)
T ss_dssp TEEECTTSCCSSCCSS------SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCCcCccCCC------CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEc
Confidence 4567777777777652 3 47888899998888888888888888999999988888777778888888999999
Q ss_pred cCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCccc
Q 003813 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLS 197 (793)
Q Consensus 118 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 197 (793)
++|++++..+.+|.++++|++|++++|+++ .++...|+++++|++|++++|.......|..++.+++|++|++++|.++
T Consensus 108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 108 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 988888877778888888999999888888 5666558888888888888887323456777777877777777777777
Q ss_pred ccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCC-CcchhhcCCCCCCEEEccCCCCccc
Q 003813 198 QDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG-SIPLSLGQIANLEYLDLSKNELNGT 276 (793)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 276 (793)
+..+..+..+.... .....++++.|.+....+..+. ...++.+++.+|.... ..+..+..+..++...+..+.....
T Consensus 187 ~~~~~~l~~L~~l~-~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 187 SIYCTDLRVLHQMP-LLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp EECGGGGHHHHTCT-TCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ccccccccchhhhh-hhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence 66666555441100 1233556666665443333222 2334455555554332 1223344444444444332221100
Q ss_pred cChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCC---CCCcccccCCCCCeEEeecCccccccChh
Q 003813 277 VSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP---RFPLWLQSQKKLNDLYISSTRISAKIPRR 353 (793)
Q Consensus 277 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 353 (793)
..+.......+.....+....+..+.... ..+..+.....++.+++.++.+....+.
T Consensus 265 -------------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~- 324 (635)
T 4g8a_A 265 -------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF- 324 (635)
T ss_dssp -------------------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG-
T ss_pred -------------------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc-
Confidence 00000111112222223333222222111 1222334455566666666655432221
Q ss_pred HHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC
Q 003813 354 FWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP 433 (793)
Q Consensus 354 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 433 (793)
.....++.|++++|.+ .+..+ ..+..|+.+++..|......
T Consensus 325 --~~~~~L~~L~l~~~~~-----------------------------~~~~~-------~~l~~L~~l~l~~n~~~~~~- 365 (635)
T 4g8a_A 325 --SYNFGWQHLELVNCKF-----------------------------GQFPT-------LKLKSLKRLTFTSNKGGNAF- 365 (635)
T ss_dssp --GSCCCCSEEEEESCEE-----------------------------SSCCC-------CBCTTCCEEEEESCCSCCBC-
T ss_pred --ccchhhhhhhcccccc-----------------------------cCcCc-------ccchhhhhcccccccCCCCc-
Confidence 1233455555555443 32211 12467888888888776432
Q ss_pred CCccCCCCCCEEEccCCccc--ccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhh
Q 003813 434 DCWMNWPRLRMLNLRNNNFT--GSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGER 511 (793)
Q Consensus 434 ~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 511 (793)
....+++|+.|++++|.+. +..+..+..+.+|++++++.|.+.. .+..+..+++|+.++++.|......+...+..
T Consensus 366 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 366 -SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp -CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred -ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence 3456889999999999885 3455566678899999999998875 45668889999999999998887777666668
Q ss_pred cccCcEEEccCccccccCCccccCCCCcCEEEcccCccc-cccCccccccccCccccCCCCCCccccccCCccchhhhhh
Q 003813 512 FSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS-GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDAL 590 (793)
Q Consensus 512 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (793)
+++++.++++.|.+.+..+..+..+++|+.|++++|++. +..|..+..+++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L--------------------------- 496 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------------------------- 496 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc---------------------------
Confidence 899999999999999888889999999999999999854 3566666665554
Q ss_pred hhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813 591 LVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP 670 (793)
Q Consensus 591 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 670 (793)
+.|||++|++++.+|..|+++++|++|+|++|++++..|..|+++++|++|||++|++++..|
T Consensus 497 -----------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 497 -----------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp -----------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred -----------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC-CCCCeEEcccCcccccCCCCCccC
Q 003813 671 QSMSNL-SFLNYLNLSNNNLNGEIPSSTQLQ 700 (793)
Q Consensus 671 ~~l~~l-~~L~~L~ls~N~l~g~ip~~~~~~ 700 (793)
..+..+ ++|++|++++|+++|.|...+...
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~ 590 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 590 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred HHHHhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence 999998 689999999999999998554333
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-47 Score=435.35 Aligned_cols=500 Identities=18% Similarity=0.200 Sum_probs=332.0
Q ss_pred CCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCC
Q 003813 9 LSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSL 88 (793)
Q Consensus 9 l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 88 (793)
|+.....|.+++.++.+|..+ .++|++|++++|.+++++ +..+.++++|++|++++|+++++++..|.++++|
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~-----~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGL-----TAAMKSLDLSFNKITYIG--HGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCC-----CTTCCEEECCSSCCCEEC--SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCceEECCCCccccccccC-----CCCccEEECcCCccCccC--hhhhhcCCcccEEECCCCCcCccChhhccccccC
Confidence 344556788888888777654 268899999999888763 2347788999999999999998888888899999
Q ss_pred CEEECcCccCCCcccccccCCCCCCEEeCcCCcCccC-CcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcC
Q 003813 89 TTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLS 167 (793)
Q Consensus 89 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 167 (793)
++|++++|.+++..|.+|+++++|++|++++|.+++. .|..++++++|++|++++|.+.+.++...++++++|++|+++
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 9999999999877777789999999999999988863 567788899999999999886557776568888999999999
Q ss_pred CCCCCCCCCcccccCCCCCcEEEccCCcccccchhHH-hhhccccCCCccEEEccCccccccc--c-cccCCCCCCCEEe
Q 003813 168 GNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEIL-GIFSACVANELESLDLGSCQIFGHM--T-NQLGRFKGLNFLD 243 (793)
Q Consensus 168 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~--~-~~l~~l~~L~~L~ 243 (793)
+|. +.+..|..++.+++|+.|+++.|.+.. ++..+ ..+ ++|++|++++|++.+.. + .....+++|+.|+
T Consensus 157 ~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 229 (549)
T 2z81_A 157 ALS-LRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADIL-----SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229 (549)
T ss_dssp ETT-CCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHST-----TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred CCc-ccccChhhhhccccCceEecccCcccc-cchhhHhhc-----ccccEEEccCCccccccccccchhhhhhccccee
Confidence 888 777788888888888888887776643 33322 223 66777777777665432 1 1122344555555
Q ss_pred CcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCC
Q 003813 244 LSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLG 323 (793)
Q Consensus 244 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 323 (793)
+++|.+++..+..+.. .+..+++|+.+++++|.+.+.....
T Consensus 230 l~~n~l~~~~~~~l~~---------------------~~~~~~~L~~l~l~~~~~~~~~~~~------------------ 270 (549)
T 2z81_A 230 FRGSVLTDESFNELLK---------------------LLRYILELSEVEFDDCTLNGLGDFN------------------ 270 (549)
T ss_dssp EESCEEEHHHHHHHHG---------------------GGGGCTTCCEEEEESCEEECCSCCC------------------
T ss_pred ccccccchhHHHHHHH---------------------Hhhhhcccccccccccccccccccc------------------
Confidence 5555544332222110 1233444444444444443211000
Q ss_pred CCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccccc
Q 003813 324 PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGS 403 (793)
Q Consensus 324 ~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~ 403 (793)
......+..+++++.|++.++.+..... +. .
T Consensus 271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~---~~----------------------------------------------~ 301 (549)
T 2z81_A 271 PSESDVVSELGKVETVTIRRLHIPQFYL---FY----------------------------------------------D 301 (549)
T ss_dssp CCTTTCCCCCTTCCEEEEESCBCSCGGG---SC----------------------------------------------C
T ss_pred ccchhhhhhhcccccccccccccchhhh---cc----------------------------------------------c
Confidence 0000112233444555555444321100 00 0
Q ss_pred ccchhhcccCCCCCccEEEccCCcccccCCCCc-cCCCCCCEEEccCCcccccCC---CCCCCCCCccEEEccCCccccc
Q 003813 404 IFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW-MNWPRLRMLNLRNNNFTGSLP---MSIGTLSSLMSLNLRNNRLSGI 479 (793)
Q Consensus 404 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~ 479 (793)
++.. ....++|+.|++++|.++ .+|..+ .++++|++|++++|++++..| ..++.+++|++|++++|++++.
T Consensus 302 l~~~----~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 376 (549)
T 2z81_A 302 LSTV----YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376 (549)
T ss_dssp CCHH----HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred chhh----hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc
Confidence 0000 001345666666666665 344443 456777777777777765542 3356667777777777777654
Q ss_pred cC--ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccc
Q 003813 480 IP--TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCI 557 (793)
Q Consensus 480 ~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 557 (793)
.+ ..+..+++|++|++++|+++ .+|..+. .+++|++|++++|+++ .+|..+ .++|++|++++|++++.+
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~---- 447 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS---- 447 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----
T ss_pred ccchhhhhcCCCCCEEECCCCCCc-cCChhhc-ccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----
Confidence 32 44667777777777777776 6666554 5677777777777776 344333 257888888888877532
Q ss_pred cccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeecc
Q 003813 558 NNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFS 637 (793)
Q Consensus 558 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 637 (793)
.+ ++.|++|||++|+++ .+|. ...+++|++|+|+
T Consensus 448 ~~--------------------------------------------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 448 LF--------------------------------------------LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp CC--------------------------------------------CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred cc--------------------------------------------CChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence 12 233578888888888 6675 4678999999999
Q ss_pred CCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813 638 YNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP 670 (793)
Q Consensus 638 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 670 (793)
+|++++.+|+.++.+++|+.|++++|.+++..|
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999888889999999999999999998776
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-48 Score=437.39 Aligned_cols=473 Identities=19% Similarity=0.204 Sum_probs=248.8
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCC
Q 003813 65 KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSN 144 (793)
Q Consensus 65 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 144 (793)
++|++++|+++.+|.. +. ++|++|++++|.+++..|.+|.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 3455666666555542 22 55666666666666555555666666666666666666555555666666666666666
Q ss_pred ccccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCc--cEEEcc
Q 003813 145 RLQGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANEL--ESLDLG 221 (793)
Q Consensus 145 ~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L--~~L~L~ 221 (793)
+++ .+|.. .+++|++|++++|. +.+ .+|..++++++|++|++++|.+++. .+..+ ++| ++|+++
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-----~~L~L~~L~l~ 146 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPI-----AHLNISKVLLV 146 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGG-----TTSCEEEEEEE
T ss_pred cee-ecCcc---ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccchh---hcccc-----ccceeeEEEee
Confidence 655 44442 55556666666655 333 3445555555555555444444431 12222 344 555555
Q ss_pred Cccc--ccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeee
Q 003813 222 SCQI--FGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLI 299 (793)
Q Consensus 222 ~n~~--~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 299 (793)
+|.+ .+..|..+..+.. +...+++++|.+.+.++...+.++++|+.+++++|...
T Consensus 147 ~n~l~~~~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 203 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred ccccccccccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence 5555 4444444433321 12223344444443333333333444444433333200
Q ss_pred eecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHh--ccccccEEEeeCccccccCCC
Q 003813 300 FKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWN--SIFQYWFLNISGNQMYGGVPK 377 (793)
Q Consensus 300 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~ 377 (793)
.. .. .+.+.+| .+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|++.|.+|.
T Consensus 204 ~~-------~~----------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 265 (520)
T 2z7x_B 204 NK-------CS----------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265 (520)
T ss_dssp TT-------TH----------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred cc-------cc----------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence 00 00 0001111 3444555566666555554432222211 123455555555555444442
Q ss_pred CCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC-CCccCC---CCCCEEEccCCccc
Q 003813 378 FDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP-DCWMNW---PRLRMLNLRNNNFT 453 (793)
Q Consensus 378 ~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~ 453 (793)
... ......++.|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+.
T Consensus 266 ~~~----------------------------~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 266 RDF----------------------------DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp CCC----------------------------CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred chh----------------------------hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc
Confidence 110 00002245566666666655 233 222222 44666666666554
Q ss_pred ccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccc
Q 003813 454 GSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL 533 (793)
Q Consensus 454 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 533 (793)
... .+..+++|++|++++|++++..|..+..+++|++|++++|++++ ++ .+|..+
T Consensus 316 ~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~----------------------~~~~~~ 370 (520)
T 2z7x_B 316 HML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LS----------------------KIAEMT 370 (520)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB-HH----------------------HHHHHH
T ss_pred ccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc-cc----------------------cchHHH
Confidence 221 11345555566666665555555555555555555555555542 11 223344
Q ss_pred cCCCCcCEEEcccCccccccCcc-ccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEc
Q 003813 534 CRLASLQILDVAYNNLSGTIPRC-INNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI 612 (793)
Q Consensus 534 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 612 (793)
..+++|++|++++|++.+.+|.. +..++ .|+.|++
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~--------------------------------------------~L~~L~L 406 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTK--------------------------------------------SLLSLNM 406 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCT--------------------------------------------TCCEEEC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCc--------------------------------------------cCCEEEC
Confidence 45555555555555554433322 22222 2355666
Q ss_pred ccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcc-cccCCCCCCeEEcccCcccc
Q 003813 613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQ-SMSNLSFLNYLNLSNNNLNG 691 (793)
Q Consensus 613 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~g 691 (793)
++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|. .+..+++|++|++++|+++|
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcc
Confidence 66666555555543 68999999999999 888888899999999999999995 555 48999999999999999999
Q ss_pred cCCCCC
Q 003813 692 EIPSST 697 (793)
Q Consensus 692 ~ip~~~ 697 (793)
.|+..+
T Consensus 483 ~c~~~~ 488 (520)
T 2z7x_B 483 SCPRID 488 (520)
T ss_dssp CHHHHH
T ss_pred cCCchH
Confidence 988543
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.8e-48 Score=440.32 Aligned_cols=452 Identities=18% Similarity=0.280 Sum_probs=291.0
Q ss_pred CCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCcc------------CCcccccCCCCCCEEEccCCccccccChh
Q 003813 86 SSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNS------------VVPGWLSKLNDLEFLSLQSNRLQGNISSL 153 (793)
Q Consensus 86 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~i~~~ 153 (793)
.+++.|+|++|.+.|.+|.+++++++|++|+|++|.+.. .+|... +..|+ +++++|.+.+.++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 478888888888888888888888888888888886521 122211 33444 555666555444433
Q ss_pred hhc-CCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEc--cCCcccccchhHHhhhccccCCCccEEEccCcccccc--
Q 003813 154 GLE-NLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFST--GFTNLSQDISEILGIFSACVANELESLDLGSCQIFGH-- 228 (793)
Q Consensus 154 ~~~-~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l--~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-- 228 (793)
+. .+..+..+++.... +.. .....++.+.+ ..|.+++ +|..++.+ ++|++|++++|.+++.
T Consensus 158 -~~~~~~~l~~~~l~~~~-~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l-----~~L~~L~Ls~n~l~~~~~ 223 (636)
T 4eco_A 158 -FSDLIKDCINSDPQQKS-IKK------SSRITLKDTQIGQLSNNITF-VSKAVMRL-----TKLRQFYMGNSPFVAENI 223 (636)
T ss_dssp -SCHHHHHHHHHCTTSCC-CCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGC-----TTCCEEEEESCCCCGGGB
T ss_pred -HHHHHHHHhhcCccccc-ccc------ccccchhhhhhccccCCCcc-CCHHHhcc-----cCCCEEECcCCccccccc
Confidence 22 11122222222211 000 00011111111 1345555 55555555 5666666666666553
Q ss_pred ---------------cccccC--CCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCC-Ccc-ccChhhhhcC----
Q 003813 229 ---------------MTNQLG--RFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE-LNG-TVSEIHFVNL---- 285 (793)
Q Consensus 229 ---------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~~l---- 285 (793)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ ++| .+|. .+.++
T Consensus 224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~ 302 (636)
T 4eco_A 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAP 302 (636)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSG
T ss_pred cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccc
Confidence 566666 66666666666666666666666666666666666665 655 4544 33332
Q ss_pred --CCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCc--ccccCCCCCeEEeecCccccccChhHHhccccc
Q 003813 286 --TKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPL--WLQSQKKLNDLYISSTRISAKIPRRFWNSIFQY 361 (793)
Q Consensus 286 --~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L 361 (793)
++|++|++++|. +. .+|. .+..+++|++|++++|++.+.+| . +.
T Consensus 303 ~l~~L~~L~L~~n~------------------------l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~----- 350 (636)
T 4eco_A 303 VGEKIQIIYIGYNN------------------------LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FG----- 350 (636)
T ss_dssp GGGTCCEEECCSSC------------------------CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CE-----
T ss_pred cCCCCCEEECCCCc------------------------CC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hC-----
Confidence 333333333332 22 3343 44444444444444444443333 1 11
Q ss_pred cEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCC
Q 003813 362 WFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPR 441 (793)
Q Consensus 362 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 441 (793)
.+++|+.|++++|.++ .+|..+..+++
T Consensus 351 ----------------------------------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 351 ----------------------------------------------------SEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp ----------------------------------------------------EEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred ----------------------------------------------------CCCCCCEEECCCCccc-cccHhhhhhcc
Confidence 1456777777777777 66777777777
Q ss_pred -CCEEEccCCcccccCCCCCCCCC--CccEEEccCCccccccCcccc-------CCCCCCEEeCCCCcccccCchhHHhh
Q 003813 442 -LRMLNLRNNNFTGSLPMSIGTLS--SLMSLNLRNNRLSGIIPTSFN-------NFTILEALDMGENELVGNIPTWMGER 511 (793)
Q Consensus 442 -L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~~ 511 (793)
|++|++++|+++ .+|..+..++ +|++|++++|.+++..|..+. .+++|++|++++|+++ .+|..++..
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~ 455 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFST 455 (636)
T ss_dssp TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHT
T ss_pred cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHcc
Confidence 888888888777 6676666544 788888888888777777776 6777888888888887 677777766
Q ss_pred cccCcEEEccCccccccCCccccC--------CCCcCEEEcccCccccccCcccc--ccccCccccCCCCCCccccccCC
Q 003813 512 FSRLIILNLRSNKFHGDFPIQLCR--------LASLQILDVAYNNLSGTIPRCIN--NFSAMATTDSSDQSNDIFYASLG 581 (793)
Q Consensus 512 l~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~~~~~~~~~~~~~~~~~ 581 (793)
+++|++|++++|+++ .+|..... +++|+.|++++|+++ .+|..+. .+++
T Consensus 456 l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~------------------- 514 (636)
T 4eco_A 456 GSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY------------------- 514 (636)
T ss_dssp TCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT-------------------
T ss_pred CCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC-------------------
Confidence 788888888888887 55543322 227888888888887 6666554 4444
Q ss_pred ccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeec------cCCcccccCCccccCcCCC
Q 003813 582 DEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNF------SYNLFTGRIPDNIGVMRSI 655 (793)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L 655 (793)
|+.|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..++++++|
T Consensus 515 -------------------------L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 515 -------------------------LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp -------------------------CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred -------------------------cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 4778888888886 7888888888888888 5688899999999999999
Q ss_pred CEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813 656 ESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE 692 (793)
Q Consensus 656 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 692 (793)
+.|+|++|++ +.+|..+. ++|++||+++|++.+.
T Consensus 569 ~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 569 TQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 9999999999 68888766 7999999999988754
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.9e-48 Score=440.71 Aligned_cols=454 Identities=18% Similarity=0.240 Sum_probs=283.1
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCC------C------cccccccCCCCCCEEeCcCCcCccCCccc
Q 003813 62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQ------G------QIPSRLGNLTSLKYLDLSFNQFNSVVPGW 129 (793)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 129 (793)
.+++.|+|+++.+.+..+..++++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+..|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 58999999999999887789999999999999999762 2 233333 45677 888888888877766
Q ss_pred ccC-CCCCCEEEccCCccccccChhhhcCCCCCcEEEcCC--CCCCCCCCcccccCCCCCcEEEccCCccccc-------
Q 003813 130 LSK-LNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSG--NDELGGKIPTSFGRFCKLKSFSTGFTNLSQD------- 199 (793)
Q Consensus 130 ~~~-l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~--n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~------- 199 (793)
+.. +..+..+++....+. ......++.+.+.. |. +++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~-l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNN-ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred HHHHHHHHhhcCccccccc-------cccccchhhhhhccccCC-Ccc-CCHHHhcccCCCEEECcCCcccccccccccc
Confidence 552 112222222211111 01111222222221 22 444 555555555555555555555553
Q ss_pred ----------chhHHh--hhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCc-CCC-CcchhhcCC-----
Q 003813 200 ----------ISEILG--IFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTT-MDG-SIPLSLGQI----- 260 (793)
Q Consensus 200 ----------~~~~~~--~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l----- 260 (793)
+|..++ .+ ++|++|++++|++.+.+|..++++++|++|++++|+ +++ .+|..++.+
T Consensus 229 ~~~~~~~~~~ip~~l~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~ 303 (636)
T 4eco_A 229 NENSEYAQQYKTEDLKWDNL-----KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303 (636)
T ss_dssp CTTSHHHHHHTTSCCCGGGC-----TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred ccccchhcccCchhhhhccc-----CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence 555555 55 677777777777777777777777788888888877 776 677777665
Q ss_pred -CCCCEEEccCCCCccccCh-hhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCe
Q 003813 261 -ANLEYLDLSKNELNGTVSE-IHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLND 338 (793)
Q Consensus 261 -~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 338 (793)
++|++|++++|+++ .+|. ..+.++++|++|++++|.+.+.++ .+. .+++|++
T Consensus 304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~------------------------~l~~L~~ 357 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG------------------------SEIKLAS 357 (636)
T ss_dssp GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE------------------------EEEEESE
T ss_pred CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC------------------------CCCCCCE
Confidence 77888888888777 5554 357777777777777777765444 333 3344444
Q ss_pred EEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCC-
Q 003813 339 LYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKN- 417 (793)
Q Consensus 339 L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~- 417 (793)
|++++|++. .+|..+. . +++
T Consensus 358 L~L~~N~l~-~lp~~l~-~---------------------------------------------------------l~~~ 378 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFC-G---------------------------------------------------------FTEQ 378 (636)
T ss_dssp EECCSSEEE-ECCTTSE-E---------------------------------------------------------ECTT
T ss_pred EECCCCccc-cccHhhh-h---------------------------------------------------------hccc
Confidence 444444443 2332211 1 233
Q ss_pred ccEEEccCCcccccCCCCccCCC--CCCEEEccCCcccccCCCCCC-------CCCCccEEEccCCccccccCccccCCC
Q 003813 418 IEFFQLSKNHFSGEIPDCWMNWP--RLRMLNLRNNNFTGSLPMSIG-------TLSSLMSLNLRNNRLSGIIPTSFNNFT 488 (793)
Q Consensus 418 L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~ 488 (793)
|+.|++++|.++ .+|..+..++ +|++|++++|++++..|..+. .+++|++|++++|++++..+..+..++
T Consensus 379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~ 457 (636)
T 4eco_A 379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457 (636)
T ss_dssp CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence 444444444444 3344443322 455555555555555554444 445556666666665543333444556
Q ss_pred CCCEEeCCCCcccccCchhHHhhc-------ccCcEEEccCccccccCCcccc--CCCCcCEEEcccCccccccCccccc
Q 003813 489 ILEALDMGENELVGNIPTWMGERF-------SRLIILNLRSNKFHGDFPIQLC--RLASLQILDVAYNNLSGTIPRCINN 559 (793)
Q Consensus 489 ~L~~L~L~~N~l~~~~p~~~~~~l-------~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~ 559 (793)
+|+.|++++|+++ .+|...+... ++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+.+
T Consensus 458 ~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~ 534 (636)
T 4eco_A 458 PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534 (636)
T ss_dssp CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred CCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc
Confidence 6666666666665 5555444222 26666666666666 5566555 66677777777777665 6666555
Q ss_pred cccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEc------ccCcceeeCccccccccCCce
Q 003813 560 FSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI------SKNNFSGEVPVEVTNLQGLQS 633 (793)
Q Consensus 560 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~ 633 (793)
+++| +.|+| ++|++.+.+|..++++++|++
T Consensus 535 l~~L--------------------------------------------~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 535 SSTL--------------------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570 (636)
T ss_dssp CSSC--------------------------------------------CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred CCCC--------------------------------------------CEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence 5444 45555 678888999999999999999
Q ss_pred eeccCCcccccCCccccCcCCCCEEECCCCcCCCC
Q 003813 634 LNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGY 668 (793)
Q Consensus 634 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 668 (793)
|+|++|++ +.+|..+. ++|+.||+++|++...
T Consensus 571 L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 571 LQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp EECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred EECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 99999999 58898876 8999999999988743
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.5e-46 Score=416.53 Aligned_cols=459 Identities=22% Similarity=0.242 Sum_probs=310.5
Q ss_pred cEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEE
Q 003813 13 QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD 92 (793)
Q Consensus 13 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 92 (793)
++||+++|.++.+|..+ . ++|++|++++|.+++++ +..+.++++|++|++++|+++++.+..|+++++|++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~---~--~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL---S--QKTTILNISQNYISELW--TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSCCCSC---C--TTCSEEECCSSCCCCCC--HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCCcccccccc---c--ccccEEECCCCcccccC--hhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 57888888887777653 2 78888888888888763 34577888888888888888888777888888888888
Q ss_pred CcCccCCCcccccccCCCCCCEEeCcCCcCcc-CCcccccCCCCCCEEEccCCccccccChhhhcCCCCC--cEEEcCCC
Q 003813 93 LSENEFQGQIPSRLGNLTSLKYLDLSFNQFNS-VVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSI--QTLLLSGN 169 (793)
Q Consensus 93 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L--~~L~L~~n 169 (793)
|++|.++ .+|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|
T Consensus 76 Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 76 LSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEEC
T ss_pred cCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecc
Confidence 8888888 45555 78888888888888877 357788888888888888887763 236666777 88888877
Q ss_pred CCC--CCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccc-cccCCCCCCCEEeCcC
Q 003813 170 DEL--GGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMT-NQLGRFKGLNFLDLSN 246 (793)
Q Consensus 170 ~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~ 246 (793)
. + .+..|..+..+.. +...+++++|++.+.++ ..+..+++|+.|++++
T Consensus 149 ~-l~~~~~~~~~l~~l~~----------------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 199 (520)
T 2z7x_B 149 E-TYGEKEDPEGLQDFNT----------------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199 (520)
T ss_dssp T-TTTSSCCTTTTTTCCE----------------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred c-cccccccccccccccc----------------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence 6 5 4555555544431 12345666666655444 3456777788888887
Q ss_pred Cc-------CCCCcchhhcCCCCCCEEEccCCCCccccChhhh--hcCCCCcEEECCCCeeeeecCCCCCCcccccEEEc
Q 003813 247 TT-------MDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHF--VNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGV 317 (793)
Q Consensus 247 n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 317 (793)
|. +.+.+| .++.+++|+.|++++|.+.+....... ...++|++|++++|.+.+
T Consensus 200 n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----------------- 261 (520)
T 2z7x_B 200 VLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG----------------- 261 (520)
T ss_dssp CCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES-----------------
T ss_pred cccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC-----------------
Confidence 76 554444 677778888888887777643322111 123466666666665554
Q ss_pred cCccCCCCCCccc-----ccCCCCCeEEeecCccccccC-hhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCc
Q 003813 318 RSCRLGPRFPLWL-----QSQKKLNDLYISSTRISAKIP-RRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGS 391 (793)
Q Consensus 318 ~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~ 391 (793)
.+|.++ ..+++|+.+++++|.+ .+| ..+...+.
T Consensus 262 -------~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~-------------------------------- 300 (520)
T 2z7x_B 262 -------QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFS-------------------------------- 300 (520)
T ss_dssp -------CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHH--------------------------------
T ss_pred -------ccccchhhcccccCceeEeccccccce--ecchhhhhcccc--------------------------------
Confidence 344444 6677777777777777 355 23322111
Q ss_pred EEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEc
Q 003813 392 IFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNL 471 (793)
Q Consensus 392 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 471 (793)
..+|+.|++++|.+.... .+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 301 -----------------------~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 301 -----------------------NMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp -----------------------TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred -----------------------cCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 134555555555554321 1256778888888888888778888888888888888
Q ss_pred cCCcccc--ccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcc
Q 003813 472 RNNRLSG--IIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549 (793)
Q Consensus 472 ~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 549 (793)
++|++++ .+|..+..+++|++|++++|++++.+|...+..+++ |+.|++++|++
T Consensus 356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~------------------------L~~L~Ls~N~l 411 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS------------------------LLSLNMSSNIL 411 (520)
T ss_dssp CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT------------------------CCEEECCSSCC
T ss_pred cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc------------------------CCEEECcCCCC
Confidence 8888886 445667777888888888887775466543323444 44444444444
Q ss_pred ccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccccc
Q 003813 550 SGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQ 629 (793)
Q Consensus 550 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 629 (793)
++.+|..+. +.|+.||+++|+++ .+|..+..++
T Consensus 412 ~~~~~~~l~----------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~ 444 (520)
T 2z7x_B 412 TDTIFRCLP----------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLE 444 (520)
T ss_dssp CGGGGGSCC----------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred Ccchhhhhc----------------------------------------------ccCCEEECCCCccc-ccchhhhcCC
Confidence 433332221 12356666666666 6777777889
Q ss_pred CCceeeccCCcccccCCcc-ccCcCCCCEEECCCCcCCCCCc
Q 003813 630 GLQSLNFSYNLFTGRIPDN-IGVMRSIESLDFSANQLSGYIP 670 (793)
Q Consensus 630 ~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 670 (793)
+|++|++++|+++ .+|.. +..+++|+.|++++|.+++..+
T Consensus 445 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 9999999999999 56655 8899999999999999987654
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.6e-44 Score=414.78 Aligned_cols=540 Identities=20% Similarity=0.187 Sum_probs=387.8
Q ss_pred CCCCCCCCCC---CcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCC
Q 003813 2 IPHQLGNLSN---LQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFP 78 (793)
Q Consensus 2 ip~~l~~l~~---L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 78 (793)
+|++...+.. -++.+-++-+++.+|..++ +++++|+|++|+|+.++. ..|.++++|++|+|++|+|++++
T Consensus 20 ~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp-----~~~~~LdLs~N~i~~l~~--~~f~~l~~L~~L~Ls~N~i~~i~ 92 (635)
T 4g8a_A 20 IPESWEPCVEVVPNITYQCMELNFYKIPDNLP-----FSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIE 92 (635)
T ss_dssp -----CCSEEEETTTEEECTTSCCSSCCSSSC-----TTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCccccCCCCEEECCCCCcCccCCCCC-----cCCCEEEeeCCCCCCCCH--HHHhCCCCCCEEECCCCcCCCcC
Confidence 4544444422 2356667667777776542 479999999999998753 35789999999999999999999
Q ss_pred CccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccc-cChhhhcC
Q 003813 79 PLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGN-ISSLGLEN 157 (793)
Q Consensus 79 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-i~~~~~~~ 157 (793)
+.+|.++++|++|+|++|++++..+.+|.++++|++|++++|+++++.+..|+++++|++|++++|.+++. +|.. ++.
T Consensus 93 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~ 171 (635)
T 4g8a_A 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSN 171 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGG
T ss_pred hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hcc
Confidence 98999999999999999999977777899999999999999999998778899999999999999998743 3444 889
Q ss_pred CCCCcEEEcCCCCCCCCCCcccccCCCCC----cEEEccCCcccccchhHHhhhccccCCCccEEEccCccccc-ccccc
Q 003813 158 LTSIQTLLLSGNDELGGKIPTSFGRFCKL----KSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFG-HMTNQ 232 (793)
Q Consensus 158 l~~L~~L~L~~n~~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~ 232 (793)
+++|++|++++|+ +.+..+..+..+.++ ..++++.|.+....+..+.. ..++.+++.+|.... ..+..
T Consensus 172 l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~------~~~~~l~l~~n~~~~~~~~~~ 244 (635)
T 4g8a_A 172 LTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE------IRLHKLTLRNNFDSLNVMKTC 244 (635)
T ss_dssp CTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSSHHHHHHH
T ss_pred chhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcccCcccccCcccccc------hhhhhhhhhcccccccccchh
Confidence 9999999999998 888778777665544 46888888887654444332 457788888876543 33445
Q ss_pred cCCCCCCCEEeCcCCc------CCCCcchhhcCCCCCCEEEccCCCCcccc--ChhhhhcCCCCcEEECCCCeeeeecCC
Q 003813 233 LGRFKGLNFLDLSNTT------MDGSIPLSLGQIANLEYLDLSKNELNGTV--SEIHFVNLTKLVTFRANGNSLIFKINP 304 (793)
Q Consensus 233 l~~l~~L~~L~L~~n~------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~ 304 (793)
+..+..++...+..+. +.......+..+..+...++..+...... ....+..+..++.+.+.++.+....
T Consensus 245 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-- 322 (635)
T 4g8a_A 245 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-- 322 (635)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--
T ss_pred hcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--
Confidence 6677777776664332 22233334445555665555444322111 1113455566666666666554322
Q ss_pred CCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCC
Q 003813 305 NWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMP 384 (793)
Q Consensus 305 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 384 (793)
.+.....++.|++.+|.+....+. .+..++.++++.|......+
T Consensus 323 ------------------------~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~-------- 366 (635)
T 4g8a_A 323 ------------------------DFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFS-------- 366 (635)
T ss_dssp ------------------------GGGSCCCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBCC--------
T ss_pred ------------------------ccccchhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCcc--------
Confidence 133345666666666666443222 23455666666554432111
Q ss_pred ccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccc--cCCCCccCCCCCCEEEccCCcccccCCCCCCC
Q 003813 385 LVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSG--EIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGT 462 (793)
Q Consensus 385 ~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 462 (793)
...+++|+.+++++|.+.. ..+..+..+.+|+.++++.|.+.. .+..+..
T Consensus 367 ---------------------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~ 418 (635)
T 4g8a_A 367 ---------------------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLG 418 (635)
T ss_dssp ---------------------------CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTT
T ss_pred ---------------------------cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccc
Confidence 1125677788888777643 345556677788888888888774 4556777
Q ss_pred CCCccEEEccCCccccccC-ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcccc-ccCCccccCCCCcC
Q 003813 463 LSSLMSLNLRNNRLSGIIP-TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFH-GDFPIQLCRLASLQ 540 (793)
Q Consensus 463 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~ 540 (793)
+++|+.+++++|......+ ..|..+++++.++++.|.+.+..|..+. .+++|++|++++|.+. +..|..+..+++|+
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred cccccchhhhhccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccC
Confidence 8888888888877665544 5677788888888888888755554444 6788888888888754 45677888899999
Q ss_pred EEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceee
Q 003813 541 ILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGE 620 (793)
Q Consensus 541 ~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 620 (793)
+|+|++|++++..|..|.++++| ++|+|++|+|++.
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L--------------------------------------------~~L~Ls~N~l~~l 533 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSL--------------------------------------------QVLNMSHNNFFSL 533 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTC--------------------------------------------CEEECTTSCCCBC
T ss_pred EEECCCCccCCcChHHHcCCCCC--------------------------------------------CEEECCCCcCCCC
Confidence 99999999988888887776665 7899999999988
Q ss_pred CccccccccCCceeeccCCcccccCCccccCc-CCCCEEECCCCcCCC
Q 003813 621 VPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM-RSIESLDFSANQLSG 667 (793)
Q Consensus 621 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~ 667 (793)
.|..|.++++|++|||++|++++.+|+.+..+ ++|+.|+|++|.++.
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 88899999999999999999999999999988 689999999999985
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-45 Score=428.26 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=82.1
Q ss_pred CcccccCCCCCcEEEccCCcccc-----------------cchhHHh--hhccccCCCccEEEccCcccccccccccCCC
Q 003813 176 IPTSFGRFCKLKSFSTGFTNLSQ-----------------DISEILG--IFSACVANELESLDLGSCQIFGHMTNQLGRF 236 (793)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 236 (793)
+|..++++++|+.|++++|.+++ .+|..++ .+ ++|++|++++|++.+.+|..++++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-----~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-----KDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-----TTCCEEEEESCTTCCSCCGGGGGC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-----CCCCEEECcCCCCCccChHHHhCC
Confidence 45555555555555555555555 3666654 55 778888888888778888888888
Q ss_pred CCCCEEeCcCCc-CCC-CcchhhcCCC-------CCCEEEccCCCCccccCh-hhhhcCCCCcEEECCCCeee
Q 003813 237 KGLNFLDLSNTT-MDG-SIPLSLGQIA-------NLEYLDLSKNELNGTVSE-IHFVNLTKLVTFRANGNSLI 299 (793)
Q Consensus 237 ~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~ 299 (793)
++|++|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. ..+.++++|+.|++++|.+.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 888888888887 776 6777666554 8888888888887 5654 35667777777777766654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-45 Score=415.80 Aligned_cols=477 Identities=21% Similarity=0.210 Sum_probs=253.8
Q ss_pred CCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEE
Q 003813 61 LPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLS 140 (793)
Q Consensus 61 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 140 (793)
+...+++++++|+++++|.... ++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3444677777777776665222 5677777777777766666777777777777777777776666777777777777
Q ss_pred ccCCccccccChhhhcCCCCCcEEEcCCCCCCCC-CCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEE
Q 003813 141 LQSNRLQGNISSLGLENLTSIQTLLLSGNDELGG-KIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLD 219 (793)
Q Consensus 141 L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 219 (793)
+++|.++ .+|.. .+++|++|++++|. +.+ ..|..++++++|++|++++|.+++. .+..+ ++|
T Consensus 107 Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-----~~L---- 169 (562)
T 3a79_B 107 VSHNRLQ-NISCC---PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPV-----AHL---- 169 (562)
T ss_dssp CTTSCCC-EECSC---CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGG-----TTS----
T ss_pred CCCCcCC-ccCcc---ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC---chhhh-----hhc----
Confidence 7777776 56653 56667777777766 433 3345555555555555554444331 11111 222
Q ss_pred ccCcccccccccccCCCCCCCEEeCcCCcC--CCCcchhhcCCC-CCCEEEccCCCCccccChhhhhcCCCCcEEECCCC
Q 003813 220 LGSCQIFGHMTNQLGRFKGLNFLDLSNTTM--DGSIPLSLGQIA-NLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296 (793)
Q Consensus 220 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 296 (793)
+|++|++++|.+ ++..|.++..+. ..-.+++++|.+.+.++...+.++++|+.+++++|
T Consensus 170 ------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 231 (562)
T 3a79_B 170 ------------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231 (562)
T ss_dssp ------------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC
T ss_pred ------------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc
Confidence 124444444444 444444444332 11133445555544444433444444444444443
Q ss_pred eeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHh--ccccccEEEeeCcccccc
Q 003813 297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWN--SIFQYWFLNISGNQMYGG 374 (793)
Q Consensus 297 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~--~~~~L~~L~ls~n~l~~~ 374 (793)
..... ........+..+++|+.++++++.+.+........ ..++|++|++++|.+.|.
T Consensus 232 ~~~~~--------------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 291 (562)
T 3a79_B 232 DENCQ--------------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291 (562)
T ss_dssp STTHH--------------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSC
T ss_pred ccccc--------------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecc
Confidence 21000 00001112333444555555544443221111100 112455555555554444
Q ss_pred CCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC-CCccC---CCCCCEEEccCC
Q 003813 375 VPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP-DCWMN---WPRLRMLNLRNN 450 (793)
Q Consensus 375 ~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~---l~~L~~L~Ls~n 450 (793)
+|.... ......++.|+.+++..+.+ .+| ..+.. ..+|++|++++|
T Consensus 292 ip~~~~----------------------------~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 292 IDREEF----------------------------TYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CCCCCC----------------------------CCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred ccchhh----------------------------hcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCC
Confidence 442110 00001133344444444443 222 11111 134566666666
Q ss_pred cccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCC
Q 003813 451 NFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP 530 (793)
Q Consensus 451 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 530 (793)
.+.... ....+++|++|++++|++++..|..+.++++|++|++++|++++ ++ .+|
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~----------------------~~~ 396 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FF----------------------KVA 396 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB-TT----------------------HHH
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC-cc----------------------cch
Confidence 554211 11345555555555555555555555555555555555555542 22 112
Q ss_pred ccccCCCCcCEEEcccCccccccCcc-ccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeE
Q 003813 531 IQLCRLASLQILDVAYNNLSGTIPRC-INNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRG 609 (793)
Q Consensus 531 ~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 609 (793)
..+..+++|++|++++|++++.+|.. +..++ .|+.
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~--------------------------------------------~L~~ 432 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE--------------------------------------------SILV 432 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT--------------------------------------------TCCE
T ss_pred hhhcCCCCCCEEECCCCcCCCccChhhhcCcc--------------------------------------------cCCE
Confidence 33445555555555555555433332 22222 2355
Q ss_pred EEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccc-ccCCCCCCeEEcccCc
Q 003813 610 IDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQS-MSNLSFLNYLNLSNNN 688 (793)
Q Consensus 610 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~ 688 (793)
|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|+.|+|++|++++ +|.. +..+++|++|++++|+
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCC
Confidence 66666666555555443 68999999999999 788888899999999999999994 5554 9999999999999999
Q ss_pred ccccCCCCCc
Q 003813 689 LNGEIPSSTQ 698 (793)
Q Consensus 689 l~g~ip~~~~ 698 (793)
++|.||..+.
T Consensus 509 ~~c~c~~~~~ 518 (562)
T 3a79_B 509 WDCTCPGIRY 518 (562)
T ss_dssp BCCCHHHHHH
T ss_pred cCCCcchHHH
Confidence 9999986544
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-44 Score=419.73 Aligned_cols=402 Identities=15% Similarity=0.206 Sum_probs=234.5
Q ss_pred CcCccCCcccccCCCCCCEEEccCCcccc-----------------ccChhhhc--CCCCCcEEEcCCCCCCCCCCcccc
Q 003813 120 NQFNSVVPGWLSKLNDLEFLSLQSNRLQG-----------------NISSLGLE--NLTSIQTLLLSGNDELGGKIPTSF 180 (793)
Q Consensus 120 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~i~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~l 180 (793)
|.+++ +|..|+++++|++|+|++|.+++ .+|.. ++ ++++|++|++++|. +.+.+|..+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~-l~~~iP~~l 511 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCP-NMTQLPDFL 511 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCT-TCCSCCGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCC-CCccChHHH
Confidence 55655 56666666666666666666665 25544 44 66666666666665 566666666
Q ss_pred cCCCCCcEEEccCCc-ccc-cchhHHhhhc--cccCCCccEEEccCccccccccc--ccCCCCCCCEEeCcCCcCCCCcc
Q 003813 181 GRFCKLKSFSTGFTN-LSQ-DISEILGIFS--ACVANELESLDLGSCQIFGHMTN--QLGRFKGLNFLDLSNTTMDGSIP 254 (793)
Q Consensus 181 ~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~--~~~~~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~ 254 (793)
+++++|+.|++++|. +++ .+|..++.+. ...+++|++|++++|++. .+|. .++.+++|++|++++|.++ .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 666666666666665 665 5666555441 111235555555555554 4444 4555555555555555555 444
Q ss_pred hhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCccc-ccEEEccCccCCCCCCcccccC
Q 003813 255 LSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQ-LTGLGVRSCRLGPRFPLWLQSQ 333 (793)
Q Consensus 255 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~ 333 (793)
.++.+++|+.|++++|.+. .+| ..+..+++ |+.|++++|.+. .+|.++...
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp-------------------------~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIP-------------------------EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCC-------------------------TTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred -hhcCCCcceEEECcCCccc-cch-------------------------HHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 4555555555555555554 344 33444444 555555555544 444444333
Q ss_pred CC--CCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcc
Q 003813 334 KK--LNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQG 411 (793)
Q Consensus 334 ~~--L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~ 411 (793)
+. |+.|++++|++.+ .+|.+... ..
T Consensus 642 ~~~~L~~L~Ls~N~l~g-------------------------~ip~l~~~----------------------------l~ 668 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGS-------------------------EGRNISCS----------------------------MD 668 (876)
T ss_dssp CSSCEEEEECCSSCTTT-------------------------TSSSCSSC----------------------------TT
T ss_pred ccCCCCEEECcCCcCCC-------------------------ccccchhh----------------------------hc
Confidence 22 4444444444433 22211100 00
Q ss_pred cCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCC
Q 003813 412 ENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILE 491 (793)
Q Consensus 412 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 491 (793)
....++|+.|++++|.++...+..+..+++|+.|+|++|+++ .+|..+.... +..+.++++|+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~----------------~~~l~nl~~L~ 731 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK----------------DGNYKNTYLLT 731 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT----------------TSCCTTGGGCC
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc----------------cccccccCCcc
Confidence 001245666677766666322223345666777777776666 3443322111 00122334666
Q ss_pred EEeCCCCcccccCchhHH-hhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCC
Q 003813 492 ALDMGENELVGNIPTWMG-ERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSD 570 (793)
Q Consensus 492 ~L~L~~N~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 570 (793)
.|+|++|+++ .+|..++ ..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+
T Consensus 732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---------------------- 787 (876)
T 4ecn_A 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---------------------- 787 (876)
T ss_dssp EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------
T ss_pred EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------------
Confidence 6666666666 5666554 346677777777777775 56667777777777777765
Q ss_pred CCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCcccc
Q 003813 571 QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIG 650 (793)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 650 (793)
++++|++.+.+|..+.++++|++|+|++|++ +.+|..+.
T Consensus 788 ----------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 788 ----------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp ----------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ----------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 1356677777888888888888888888888 58888766
Q ss_pred CcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccc
Q 003813 651 VMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG 691 (793)
Q Consensus 651 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 691 (793)
++|+.|||++|++....+..+.....+..+.+++|++..
T Consensus 827 --~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 827 --PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp --SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred --CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 688888999888887777777666667777888887654
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-42 Score=394.40 Aligned_cols=469 Identities=21% Similarity=0.228 Sum_probs=282.5
Q ss_pred CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813 35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY 114 (793)
Q Consensus 35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 114 (793)
+...+++++++++++++|.. + .++|++|++++|.++++++..|.++++|++|++++|.+++..|.+|.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~---~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKD---L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCSCCTT---S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCccCCCC---C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 44457788888877776542 2 267788888888888777777778888888888888887766777778888888
Q ss_pred EeCcCCcCccCCcccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccC
Q 003813 115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG-NISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGF 193 (793)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~ 193 (793)
|++++|.++. +|.. .+++|++|++++|++++ .+|.. |+++++|++|++++|. +.+.....+.++ +|+.|+++.
T Consensus 105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~L-~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAK-FRQLDLLPVAHL-HLSCILLDL 178 (562)
T ss_dssp EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSB-CCTTTTGGGTTS-CEEEEEEEE
T ss_pred EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCc-cccCchhhhhhc-eeeEEEeec
Confidence 8888887775 4444 67788888888887773 22233 7778888888888776 544322233333 337777777
Q ss_pred Ccc--cccchhHHhhhccccCCCccEEEccCccccccccc-ccCCCCCCCEEeCcCCcCC----CCcchhhcCCCCCCEE
Q 003813 194 TNL--SQDISEILGIFSACVANELESLDLGSCQIFGHMTN-QLGRFKGLNFLDLSNTTMD----GSIPLSLGQIANLEYL 266 (793)
Q Consensus 194 n~l--~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L 266 (793)
|.+ ++..|..+..+.. +.-.+++++|.+.+.++. .+..+++|+.+++++|... ......+..+++|+.+
T Consensus 179 n~l~~~~~~~~~l~~l~~----~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNT----TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp SSCCCCSSSCCEEEECCE----EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred ccccccccCcccccccCc----ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 777 5555554433310 112446666665544332 3445566666666665311 0112234455555555
Q ss_pred EccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCccc-----ccCCCCCeEEe
Q 003813 267 DLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWL-----QSQKKLNDLYI 341 (793)
Q Consensus 267 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l 341 (793)
+++++.+.+........ .....+|++|++++|.+.+.+|.++ ..++.|+.+++
T Consensus 255 ~L~~~~l~~~~~~~~~~----------------------~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQ----------------------FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp EEEEEEECHHHHHHHHH----------------------HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred EecCCcCcHHHHHHHHH----------------------hhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 55555443211100000 0011133344444444433444333 33333333333
Q ss_pred ecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEE
Q 003813 342 SSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFF 421 (793)
Q Consensus 342 ~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L 421 (793)
+.+.+ .+|....... ....+|+.|
T Consensus 313 ~~~~~--~~p~~~~~~~------------------------------------------------------~~~~~L~~L 336 (562)
T 3a79_B 313 KNQVF--LFSKEALYSV------------------------------------------------------FAEMNIKML 336 (562)
T ss_dssp EECCC--SSCHHHHHHH------------------------------------------------------HHTCCCSEE
T ss_pred cccee--ecChhhhhhh------------------------------------------------------hccCcceEE
Confidence 33333 2232111000 002456777
Q ss_pred EccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccc--cCccccCCCCCCEEeCCCCc
Q 003813 422 QLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGI--IPTSFNNFTILEALDMGENE 499 (793)
Q Consensus 422 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~ 499 (793)
++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++. .|..+.++++|+.|++++|+
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 77777665321 125678888888888888888888888888999999999988863 34567777888888888887
Q ss_pred ccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc
Q 003813 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS 579 (793)
Q Consensus 500 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~ 579 (793)
+++.+|...+..+++|++|++++|++++.+|..+. ++|
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L---------------------------------------- 452 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV---------------------------------------- 452 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC----------------------------------------
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC----------------------------------------
Confidence 77546654333444444444444444433332221 233
Q ss_pred CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCcc-ccCcCCCCEE
Q 003813 580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDN-IGVMRSIESL 658 (793)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L 658 (793)
+.|||++|+++ .+|..+.++++|++|+|++|+++ .+|.. ++.+++|+.|
T Consensus 453 ----------------------------~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 453 ----------------------------KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502 (562)
T ss_dssp ----------------------------SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCE
T ss_pred ----------------------------CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEE
Confidence 55566666665 56666668889999999999999 56655 8899999999
Q ss_pred ECCCCcCCCCCc
Q 003813 659 DFSANQLSGYIP 670 (793)
Q Consensus 659 ~Ls~N~l~~~~p 670 (793)
++++|.+++..|
T Consensus 503 ~l~~N~~~c~c~ 514 (562)
T 3a79_B 503 WLHDNPWDCTCP 514 (562)
T ss_dssp ECCSCCBCCCHH
T ss_pred EecCCCcCCCcc
Confidence 999999987655
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-40 Score=365.18 Aligned_cols=372 Identities=16% Similarity=0.190 Sum_probs=245.5
Q ss_pred CCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEE
Q 003813 237 KGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLG 316 (793)
Q Consensus 237 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 316 (793)
++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...|.++++|++|++++|.+....+..+..+.+|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666666666666555666666666666666666665555554566666666666666666555555555555555555
Q ss_pred ccCccCCCCCCcc--cccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEE
Q 003813 317 VRSCRLGPRFPLW--LQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFD 394 (793)
Q Consensus 317 l~~~~~~~~~~~~--l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ 394 (793)
+++|.+.+..+.. +..+++|++|++++|++.+..|..++..+++|++|++++|++.+..|..
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------- 173 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED---------------- 173 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT----------------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh----------------
Confidence 5555555433332 5666677777777777666555554444555555555555443332210
Q ss_pred cccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCc--------cCCCCCCEEEccCCcccccCCCCCCCC---
Q 003813 395 LSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCW--------MNWPRLRMLNLRNNNFTGSLPMSIGTL--- 463 (793)
Q Consensus 395 ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~~l--- 463 (793)
+.. + ....++.|++++|.+.+..+..+ ..+++|++|++++|++++..|..+...
T Consensus 174 -------------l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 174 -------------LLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238 (455)
T ss_dssp -------------SGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred -------------hhc-c-ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc
Confidence 000 0 01345556666665554433322 233445555555555544444333221
Q ss_pred CCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHH-hhcccCcEEEccCccccccCCccccCCCCcCEE
Q 003813 464 SSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMG-ERFSRLIILNLRSNKFHGDFPIQLCRLASLQIL 542 (793)
Q Consensus 464 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 542 (793)
++|+.|++++|.+.+... ..+.+.+..+..+. -..++|++|++++|++.+..|..+..+++|++|
T Consensus 239 ~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 304 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304 (455)
T ss_dssp CCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEE
Confidence 445555555554432210 00111111111111 024689999999999999999999999999999
Q ss_pred EcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCc
Q 003813 543 DVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVP 622 (793)
Q Consensus 543 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 622 (793)
++++|++.+..|..+.+++.| +.|+|++|++++..|
T Consensus 305 ~Ls~n~l~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 305 TLAQNEINKIDDNAFWGLTHL--------------------------------------------LKLNLSQNFLGSIDS 340 (455)
T ss_dssp ECTTSCCCEECTTTTTTCTTC--------------------------------------------CEEECCSSCCCEECG
T ss_pred ECCCCcccccChhHhcCcccC--------------------------------------------CEEECCCCccCCcCh
Confidence 999999998878777766555 889999999999889
Q ss_pred cccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCC
Q 003813 623 VEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSST 697 (793)
Q Consensus 623 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 697 (793)
..++++++|++|+|++|++++..|..|+.+++|++|++++|++++..+..+..+++|++|++++|+++|.||...
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 999999999999999999999999999999999999999999998888888999999999999999999999653
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.2e-40 Score=360.71 Aligned_cols=403 Identities=24% Similarity=0.289 Sum_probs=179.9
Q ss_pred CCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEE
Q 003813 85 FSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTL 164 (793)
Q Consensus 85 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L 164 (793)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++.+|+.+++.+|.. .++++|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHEL 76 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCEE
Confidence 46777777777777 46777777777777777777777777777777776665444443321 234555
Q ss_pred EcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeC
Q 003813 165 LLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDL 244 (793)
Q Consensus 165 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 244 (793)
++++|. +++ +|.. . ++|++|++++|.+.+ +|.. .++|++|++
T Consensus 77 ~l~~~~-l~~-lp~~---~-----------------------------~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l 118 (454)
T 1jl5_A 77 ELNNLG-LSS-LPEL---P-----------------------------PHLESLVASCNSLTE-LPEL---PQSLKSLLV 118 (454)
T ss_dssp ECTTSC-CSC-CCSC---C-----------------------------TTCSEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred EecCCc-ccc-CCCC---c-----------------------------CCCCEEEccCCcCCc-cccc---cCCCcEEEC
Confidence 665554 332 1110 1 234444444444433 2221 134444444
Q ss_pred cCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCC
Q 003813 245 SNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGP 324 (793)
Q Consensus 245 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 324 (793)
++|.+++. |.. .++|++|++++|++++ +| .+.++++|++|++++|++.+ ++.. ..+|++|++++|.+.+
T Consensus 119 ~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 119 DNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE 187 (454)
T ss_dssp CSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS
T ss_pred CCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc
Confidence 44444421 110 1344444444444442 33 24444444444444444332 1100 1133333333333332
Q ss_pred CCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccc
Q 003813 325 RFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSI 404 (793)
Q Consensus 325 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~ 404 (793)
+| .+..+++|++|++++|++.+ +|.
T Consensus 188 -l~-~~~~l~~L~~L~l~~N~l~~-l~~---------------------------------------------------- 212 (454)
T 1jl5_A 188 -LP-ELQNLPFLTAIYADNNSLKK-LPD---------------------------------------------------- 212 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSS-CCC----------------------------------------------------
T ss_pred -Cc-cccCCCCCCEEECCCCcCCc-CCC----------------------------------------------------
Confidence 22 23344444444444444332 110
Q ss_pred cchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccc
Q 003813 405 FHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSF 484 (793)
Q Consensus 405 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 484 (793)
..++|+.|++++|.++ .+|. +..+++|++|++++|++++ +|.. +++|++|++++|++++ +|..
T Consensus 213 ---------~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~- 275 (454)
T 1jl5_A 213 ---------LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL- 275 (454)
T ss_dssp ---------CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC-
T ss_pred ---------CcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc-
Confidence 0235666666666666 4453 6667777777777777764 3432 3567777777777765 3332
Q ss_pred cCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCC-CCcCEEEcccCccccccCccccccccC
Q 003813 485 NNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL-ASLQILDVAYNNLSGTIPRCINNFSAM 563 (793)
Q Consensus 485 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L 563 (793)
+++|+.|++++|++++ +|. ..++|++|++++|++++. + .+ ++|+.|++++|++++ +|..+
T Consensus 276 --~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~~------ 336 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPALP------ 336 (454)
T ss_dssp --CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCCC------
T ss_pred --cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-ccccC------
Confidence 3667777777777664 332 124677777777777642 2 22 467777777777764 44321
Q ss_pred ccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccc
Q 003813 564 ATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTG 643 (793)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 643 (793)
+.|+.|++++|+++ .+|. .+++|++|++++|++++
T Consensus 337 -----------------------------------------~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 337 -----------------------------------------PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp -----------------------------------------TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred -----------------------------------------CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCc
Confidence 23466777777777 4555 36777777777777776
Q ss_pred --cCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccc--cCCCC
Q 003813 644 --RIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG--EIPSS 696 (793)
Q Consensus 644 --~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~~ 696 (793)
.+|..++.+ +.|.+.|.+|.. +++|++||+++|+++| .+|..
T Consensus 372 l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 372 FPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp CCCCCTTCCEE--------ECCC----------------------------------
T ss_pred CCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 566655432 345666666653 4677777888887776 66653
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-38 Score=351.07 Aligned_cols=392 Identities=19% Similarity=0.187 Sum_probs=267.5
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccC-CcccccCCCCCCEEEccC
Q 003813 65 KELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSV-VPGWLSKLNDLEFLSLQS 143 (793)
Q Consensus 65 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~ 143 (793)
+.++.++++++.+|. +. ++|++|+|++|.+++..|.+|.++++|++|++++|.+.+. .+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 345556666665553 11 4566666666666655555555566666666665555422 234455555555555555
Q ss_pred CccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCc
Q 003813 144 NRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSC 223 (793)
Q Consensus 144 n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 223 (793)
|.+++..|.. |+++++ |++|++++|
T Consensus 89 n~l~~~~~~~-~~~l~~------------------------------------------------------L~~L~L~~n 113 (455)
T 3v47_A 89 NQFLQLETGA-FNGLAN------------------------------------------------------LEVLTLTQC 113 (455)
T ss_dssp CTTCEECTTT-TTTCTT------------------------------------------------------CCEEECTTS
T ss_pred CccCccChhh-ccCccc------------------------------------------------------CCEEeCCCC
Confidence 5554222222 333333 333333334
Q ss_pred cccccccc--ccCCCCCCCEEeCcCCcCCCCcchh-hcCCCCCCEEEccCCCCccccChhhhhcC--CCCcEEECCCCee
Q 003813 224 QIFGHMTN--QLGRFKGLNFLDLSNTTMDGSIPLS-LGQIANLEYLDLSKNELNGTVSEIHFVNL--TKLVTFRANGNSL 298 (793)
Q Consensus 224 ~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l 298 (793)
++.+..+. .++.+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+. .+..+ .+|+.+++++|.+
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l 192 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITL 192 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBC
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcc
Confidence 44333332 3777888999999999888777766 78888888888888888765444 44443 4566666666555
Q ss_pred eeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhc--cccccEEEeeCccccccCC
Q 003813 299 IFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS--IFQYWFLNISGNQMYGGVP 376 (793)
Q Consensus 299 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~--~~~L~~L~ls~n~l~~~~~ 376 (793)
....+..+. ......+..+++|++|++++|++.+..|..+... ..+++.|++++|...+...
T Consensus 193 ~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 193 QDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp TTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccchhhcc----------------ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 432211100 0000112345778888888888887777766553 2678888888887654322
Q ss_pred CCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccC
Q 003813 377 KFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSL 456 (793)
Q Consensus 377 ~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 456 (793)
.. +.+.+..+..+.. ...++|+.|++++|.+++..|..|..+++|++|++++|++++..
T Consensus 257 ~~-------------------~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 257 GH-------------------TNFKDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TC-------------------CSSCCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ch-------------------hhhccCccccccc--ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 11 1111111111100 11478999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCC
Q 003813 457 PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL 536 (793)
Q Consensus 457 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 536 (793)
|..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccC
Confidence 99999999999999999999999899999999999999999999977677766 79999999999999997766678899
Q ss_pred CCcCEEEcccCccccccC
Q 003813 537 ASLQILDVAYNNLSGTIP 554 (793)
Q Consensus 537 ~~L~~L~Ls~N~l~~~~p 554 (793)
++|+.|++++|++++..|
T Consensus 395 ~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred CcccEEEccCCCcccCCC
Confidence 999999999999998777
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.8e-39 Score=349.37 Aligned_cols=187 Identities=25% Similarity=0.327 Sum_probs=106.1
Q ss_pred CCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCC-------------CEEeCcCCcCccCC
Q 003813 60 SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL-------------KYLDLSFNQFNSVV 126 (793)
Q Consensus 60 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~ 126 (793)
+..+|++|++++|.+..+|+ .++++++|++|++++|.+.+.+|.+++++++| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCchhhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 35889999999999977665 79999999999999999999999999999876 666666666655 2
Q ss_pred cccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhh
Q 003813 127 PGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGI 206 (793)
Q Consensus 127 ~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 206 (793)
|.. .++|++|++++|.+++ +|.. .++|++|++++|. +++ ++.
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~-------------------------l~~-l~~---- 128 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNN-------------------------LKA-LSD---- 128 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSC-------------------------CSC-CCS----
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCc-------------------------cCc-ccC----
Confidence 321 2456666666666653 4431 2455555555554 332 110
Q ss_pred hccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCC
Q 003813 207 FSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT 286 (793)
Q Consensus 207 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 286 (793)
. .++|++|++++|++.+ +| .++.+++|++|++++|++++ +|..+ ++|++|++++|.+++ ++ .+.+++
T Consensus 129 ~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~ 195 (454)
T 1jl5_A 129 L----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLP 195 (454)
T ss_dssp C----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCT
T ss_pred C----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCC
Confidence 0 0467777777777765 55 47777777777777777774 44332 477777777777764 44 366777
Q ss_pred CCcEEECCCCeee
Q 003813 287 KLVTFRANGNSLI 299 (793)
Q Consensus 287 ~L~~L~l~~n~l~ 299 (793)
+|++|++++|.+.
T Consensus 196 ~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 196 FLTAIYADNNSLK 208 (454)
T ss_dssp TCCEEECCSSCCS
T ss_pred CCCEEECCCCcCC
Confidence 7777777777654
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-37 Score=338.74 Aligned_cols=407 Identities=17% Similarity=0.201 Sum_probs=254.1
Q ss_pred cCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCC
Q 003813 32 LSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTS 111 (793)
Q Consensus 32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 111 (793)
+.++++|++|++++|.+++++ .+..+++|++|++++|++++++ ++.+++|++|++++|.+++. + ++++++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT----GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT----TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred hhHcCCCCEEEccCCCcccCh----hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 455667777777777766653 2456677777777777776653 66667777777777777653 2 666777
Q ss_pred CCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEc
Q 003813 112 LKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFST 191 (793)
Q Consensus 112 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l 191 (793)
|++|++++|++++. | ++.+++|++|++++|++++ ++ ++++++|++|++++|. ..+.+ .+..+++|+.|++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~-~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNK-KITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCS-CCCCC--CCTTCTTCCEEEC
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCC-ccccc--ccccCCcCCEEEC
Confidence 77777777777663 3 6667777777777777663 32 5667777777777775 33333 3556666666666
Q ss_pred cCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCC
Q 003813 192 GFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKN 271 (793)
Q Consensus 192 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 271 (793)
++|.+++ +| +..+ ++|+.|++++|++++. .++.+++|++|++++|++++ +| ++.+++|++|++++|
T Consensus 178 s~n~l~~-l~--l~~l-----~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 178 SFNKITE-LD--VSQN-----KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CSSCCCC-CC--CTTC-----TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred CCCccce-ec--cccC-----CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 6666655 22 3333 6777777777777654 36777788888888888876 44 677788888888888
Q ss_pred CCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccC
Q 003813 272 ELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIP 351 (793)
Q Consensus 272 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 351 (793)
++++. + +..+++|+.|+++.| +|+.+++++|...+.+| ...+++|+.|++++|...+.+|
T Consensus 244 ~l~~~-~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 244 PLTEL-D---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCSCC-C---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred cCCCc-C---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 77753 2 345677777776655 23445555555544444 2345555555555555444333
Q ss_pred hhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCccccc
Q 003813 352 RRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGE 431 (793)
Q Consensus 352 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 431 (793)
.. ..+ ++.++++ .+++|+.|++++|++++.
T Consensus 304 ~~----~~~-----------------------------L~~L~l~-----------------~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 304 CQ----AAG-----------------------------ITELDLS-----------------QNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp CT----TCC-----------------------------CSCCCCT-----------------TCTTCCEEECTTCCCSCC
T ss_pred cC----CCc-----------------------------ceEechh-----------------hcccCCEEECCCCccccc
Confidence 21 112 2222222 246788888888888874
Q ss_pred CCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhh
Q 003813 432 IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGER 511 (793)
Q Consensus 432 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 511 (793)
+ +.++++|+.|++++|++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+...
T Consensus 334 -~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 334 -D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp -C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred -c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcc
Confidence 2 7888889999999988885 24667778888888875 245567788889999888888776654
Q ss_pred cccCcEEEccCccccccCCc--cccCCC-----CcCEEEcccCccccccCcccc
Q 003813 512 FSRLIILNLRSNKFHGDFPI--QLCRLA-----SLQILDVAYNNLSGTIPRCIN 558 (793)
Q Consensus 512 l~~L~~L~L~~n~l~~~~p~--~~~~l~-----~L~~L~Ls~N~l~~~~p~~~~ 558 (793)
..++....-..+........ .+.+++ -+.....++|.++|.++..+.
T Consensus 398 ~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~ 451 (457)
T 3bz5_A 398 FGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFE 451 (457)
T ss_dssp TSCCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC
T ss_pred cCceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEeccccc
Confidence 45555444443322211110 111111 223333446777777766543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-36 Score=333.13 Aligned_cols=359 Identities=19% Similarity=0.222 Sum_probs=232.8
Q ss_pred hhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCC
Q 003813 57 VINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDL 136 (793)
Q Consensus 57 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 136 (793)
.++.+++|++|++++|.+++++ .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 3567889999999999998875 588899999999999998864 3 88899999999999998884 3 8889999
Q ss_pred CEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCcc
Q 003813 137 EFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELE 216 (793)
Q Consensus 137 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~ 216 (793)
++|++++|++++ ++ ++.+++|++|++++|+ +++. .++.+++|+.|+++.|...+.++ +..+ ++|+
T Consensus 109 ~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~~l-----~~L~ 173 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD---VSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQ-----TQLT 173 (457)
T ss_dssp CEEECCSSCCSC-CC---CTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCCC--CTTC-----TTCC
T ss_pred CEEECCCCcCCe-ec---CCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCcccccc--cccC-----CcCC
Confidence 999999998884 54 7788899999999887 6553 26666667777666665444331 2222 5566
Q ss_pred EEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCC
Q 003813 217 SLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGN 296 (793)
Q Consensus 217 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 296 (793)
+|++++|++++. | ++.+++|++|++++|.+++. .++.+++|++|++++|++++ +| +..+++|+.|++++|
T Consensus 174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVN 243 (457)
T ss_dssp EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSS
T ss_pred EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCC
Confidence 666666665542 2 55556666666666666543 25555666666666666553 32 445555555555555
Q ss_pred eeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCC
Q 003813 297 SLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVP 376 (793)
Q Consensus 297 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 376 (793)
++.+.. ...+++|+.|++++|++
T Consensus 244 ~l~~~~---------------------------~~~l~~L~~L~l~~n~L------------------------------ 266 (457)
T 3bz5_A 244 PLTELD---------------------------VSTLSKLTTLHCIQTDL------------------------------ 266 (457)
T ss_dssp CCSCCC---------------------------CTTCTTCCEEECTTCCC------------------------------
T ss_pred cCCCcC---------------------------HHHCCCCCEEeccCCCC------------------------------
Confidence 443321 12233444444333221
Q ss_pred CCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccC
Q 003813 377 KFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSL 456 (793)
Q Consensus 377 ~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 456 (793)
+.+++++|.+.+.+|. ..+++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 267 --------------~~L~l~~n~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------ 317 (457)
T 3bz5_A 267 --------------LEIDLTHNTQLIYFQA------EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------ 317 (457)
T ss_dssp --------------SCCCCTTCTTCCEEEC------TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------
T ss_pred --------------CEEECCCCccCCcccc------cccccCCEEECCCCcccceecc---CCCcceEechhhc------
Confidence 2223333333333321 2356777777777776666553 2344555554443
Q ss_pred CCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCC
Q 003813 457 PMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRL 536 (793)
Q Consensus 457 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 536 (793)
++|++|++++|++++. + +.++++|+.|++++|++++ ++.|..|++++|.+.|. +.+
T Consensus 318 -------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~ 373 (457)
T 3bz5_A 318 -------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQT 373 (457)
T ss_dssp -------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEE
T ss_pred -------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----cee
Confidence 5777888888888764 2 7777888888888887773 34556667778887765 244
Q ss_pred CCcCEEEcccCccccccCcccc
Q 003813 537 ASLQILDVAYNNLSGTIPRCIN 558 (793)
Q Consensus 537 ~~L~~L~Ls~N~l~~~~p~~~~ 558 (793)
..|+.+++++|+++|.+|..+.
T Consensus 374 ~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 374 ITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp EECCCBCCBTTBEEEECCTTCB
T ss_pred eecCccccccCcEEEEcChhHh
Confidence 5677778888888888886543
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=334.37 Aligned_cols=257 Identities=17% Similarity=0.154 Sum_probs=160.1
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
+++|+.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|+.|+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 34455555555555555555555555555555555555555555555555555555555555554444555555555555
Q ss_pred CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCc
Q 003813 495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSND 574 (793)
Q Consensus 495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 574 (793)
+++|.+.+..+.. +..+++|++|++++|...+.+|.......+|+.|++++|++++..+..+.+++.
T Consensus 183 l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~------------ 249 (477)
T 2id5_A 183 LRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY------------ 249 (477)
T ss_dssp EESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT------------
T ss_pred CCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc------------
Confidence 5555555322222 224555666666665555555554444556666666666665322223333333
Q ss_pred cccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCC
Q 003813 575 IFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRS 654 (793)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 654 (793)
|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++
T Consensus 250 --------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 250 --------------------------------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp --------------------------------CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred --------------------------------cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 366777777777666777788888888888888888888888888888
Q ss_pred CCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCC
Q 003813 655 IESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAP 716 (793)
Q Consensus 655 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~ 716 (793)
|+.|+|++|++++..+..|..+++|++|++++|++.|.|+..+.+.+.....+.++ ..|..|
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 88888888888877777788888888888888888888775544444333444444 445433
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.4e-35 Score=322.27 Aligned_cols=344 Identities=25% Similarity=0.377 Sum_probs=201.9
Q ss_pred CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813 35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY 114 (793)
Q Consensus 35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 114 (793)
++++++|+++++.+..++. +..+++|++|++++|.++++++ +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 5677777777777766543 4567777777777777777764 6777777777777777775433 777777777
Q ss_pred EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCC
Q 003813 115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFT 194 (793)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n 194 (793)
|++++|.+++..+ +.++++|++|++++|.+. .++. ++.+++|++|+++++ +.+. ..+.++++|+.|++++|
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~~--~~~~--~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGNQ--VTDL--KPLANLTTLERLDISSN 187 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEES--CCCC--GGGTTCTTCCEEECCSS
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCCc--ccCc--hhhccCCCCCEEECcCC
Confidence 7777777776432 677777777777777776 3442 677777777777533 3222 22666666666666666
Q ss_pred cccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCc
Q 003813 195 NLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELN 274 (793)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 274 (793)
.+++. ..+..+ ++|++|++++|.+.+..+ ++.+++|++|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 188 ~l~~~--~~l~~l-----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 188 KVSDI--SVLAKL-----TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CCCCC--GGGGGC-----TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cCCCC--hhhccC-----CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 55442 113333 566666666666655444 45566666666666666543 24556666666666666665
Q ss_pred cccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhH
Q 003813 275 GTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRF 354 (793)
Q Consensus 275 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~ 354 (793)
+..+ +..+++|+.|++++|.+. +..+ +..+++|++|++++|++.+..+
T Consensus 257 ~~~~---~~~l~~L~~L~l~~n~l~------------------------~~~~--~~~l~~L~~L~L~~n~l~~~~~--- 304 (466)
T 1o6v_A 257 NLAP---LSGLTKLTELKLGANQIS------------------------NISP--LAGLTALTNLELNENQLEDISP--- 304 (466)
T ss_dssp CCGG---GTTCTTCSEEECCSSCCC------------------------CCGG--GTTCTTCSEEECCSSCCSCCGG---
T ss_pred cchh---hhcCCCCCEEECCCCccC------------------------cccc--ccCCCccCeEEcCCCcccCchh---
Confidence 3322 455555555555555443 2222 5566777777777777655322
Q ss_pred HhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCC
Q 003813 355 WNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPD 434 (793)
Q Consensus 355 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 434 (793)
+.. +++|+.|++++|++++..|
T Consensus 305 ~~~---------------------------------------------------------l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 305 ISN---------------------------------------------------------LKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp GGG---------------------------------------------------------CTTCSEEECCSSCCSCCGG-
T ss_pred hcC---------------------------------------------------------CCCCCEEECcCCcCCCchh-
Confidence 122 3444444444444444333
Q ss_pred CccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCccc
Q 003813 435 CWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELV 501 (793)
Q Consensus 435 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 501 (793)
+..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 34455555555555555532 234455555555555555554444 455555555555555555
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.4e-36 Score=313.30 Aligned_cols=258 Identities=30% Similarity=0.550 Sum_probs=242.2
Q ss_pred CCccEEEccCCcccc--cCCCCccCCCCCCEEEccC-CcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCE
Q 003813 416 KNIEFFQLSKNHFSG--EIPDCWMNWPRLRMLNLRN-NNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEA 492 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 492 (793)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+++.+|..|..+++|++|++++|.+++..|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCC-CcCEEEcccCccccccCccccccccCccccCCCC
Q 003813 493 LDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLA-SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQ 571 (793)
Q Consensus 493 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 571 (793)
|++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~---------- 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---------- 198 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc----------
Confidence 99999999989998887 799999999999999999999999998 999999999999999998776654
Q ss_pred CCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccC
Q 003813 572 SNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGV 651 (793)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 651 (793)
|+.|++++|++++.+|..+..+++|++|++++|++++.+|. +..
T Consensus 199 -----------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~ 242 (313)
T 1ogq_A 199 -----------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL 242 (313)
T ss_dssp -----------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC
T ss_pred -----------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc
Confidence 37899999999999999999999999999999999977776 889
Q ss_pred cCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCCCCCC
Q 003813 652 MRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAPLPNC 720 (793)
Q Consensus 652 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~c 720 (793)
+++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+| .+||.|...|
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999888888888899999 7999887766
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.7e-35 Score=322.65 Aligned_cols=345 Identities=24% Similarity=0.332 Sum_probs=263.5
Q ss_pred CCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEE
Q 003813 213 NELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFR 292 (793)
Q Consensus 213 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 292 (793)
++++.|+++++.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEEE
Confidence 578888888887754 33 36778888888888888876544 7788888888888888764332 67777777777
Q ss_pred CCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCcccc
Q 003813 293 ANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMY 372 (793)
Q Consensus 293 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~ 372 (793)
+++|.+... +. +..+++|++|++++|.+.+. +. +..+++|+.|+++ |.+.
T Consensus 119 L~~n~l~~~-------------------------~~-~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~-~~~~ 168 (466)
T 1o6v_A 119 LFNNQITDI-------------------------DP-LKNLTNLNRLELSSNTISDI-SA--LSGLTSLQQLSFG-NQVT 168 (466)
T ss_dssp CCSSCCCCC-------------------------GG-GTTCTTCSEEEEEEEEECCC-GG--GTTCTTCSEEEEE-ESCC
T ss_pred CCCCCCCCC-------------------------hH-HcCCCCCCEEECCCCccCCC-hh--hccCCcccEeecC-Cccc
Confidence 777765432 11 55666777777777766542 21 3445666666664 2221
Q ss_pred ccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcc
Q 003813 373 GGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNF 452 (793)
Q Consensus 373 ~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 452 (793)
+. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+
T Consensus 169 ~~-----------------------------------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 169 DL-----------------------------------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp CC-----------------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred Cc-----------------------------------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence 10 0133478888999999888754 3478889999999999999
Q ss_pred cccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCcc
Q 003813 453 TGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQ 532 (793)
Q Consensus 453 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 532 (793)
++..| ++.+++|++|++++|++++. ..+..+++|+.|++++|.+.+..| + ..+++|++|++++|++++..+
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~-- 282 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L-SGLTKLTELKLGANQISNISP-- 282 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG--
T ss_pred ccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h-hcCCCCCEEECCCCccCcccc--
Confidence 86655 67789999999999998864 467889999999999999985444 3 368999999999999986543
Q ss_pred ccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEc
Q 003813 533 LCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDI 612 (793)
Q Consensus 533 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 612 (793)
+..+++|+.|++++|++.+..| +..+ +.|+.|++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l--------------------------------------------~~L~~L~L 316 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNL--------------------------------------------KNLTYLTL 316 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGC--------------------------------------------TTCSEEEC
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCC--------------------------------------------CCCCEEEC
Confidence 7889999999999999875433 3333 44588999
Q ss_pred ccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813 613 SKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE 692 (793)
Q Consensus 613 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 692 (793)
++|++++..| +..+++|++|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 9999997766 78999999999999999964 468999999999999999998887 89999999999999999983
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=318.48 Aligned_cols=322 Identities=22% Similarity=0.282 Sum_probs=209.3
Q ss_pred cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813 39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118 (793)
Q Consensus 39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 118 (793)
+.++.+++.++.+|.. -.+++++|++++|+++++++..|.++++|++|+|++|.+++..|.+|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~ip~~-----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-----IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSSCCSC-----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCcCCCC-----CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 4566666666665442 12466777777777777766667777777777777777776666677777777777777
Q ss_pred CCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccc
Q 003813 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQ 198 (793)
Q Consensus 119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 198 (793)
+|.+++..+..|.++++|++|++++|.+.+..+. .|.++++|++|++++|. +.+..+..|..+
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l--------------- 151 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDND-LVYISHRAFSGL--------------- 151 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTT-CCEECTTSSTTC---------------
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCc-cceeChhhccCC---------------
Confidence 7777665555666777777777777776633333 36666677777776665 444444444444
Q ss_pred cchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccccC
Q 003813 199 DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGTVS 278 (793)
Q Consensus 199 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 278 (793)
++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.++
T Consensus 152 --------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 152 --------------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp --------------TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred --------------CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 455555555555555555556666777777777777776666667777777777777776654444
Q ss_pred hhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhcc
Q 003813 279 EIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSI 358 (793)
Q Consensus 279 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 358 (793)
...+ ...+|++|++++|++++ +|...+
T Consensus 218 ~~~~-------------------------------------------------~~~~L~~L~l~~n~l~~-~~~~~~--- 244 (477)
T 2id5_A 218 PNCL-------------------------------------------------YGLNLTSLSITHCNLTA-VPYLAV--- 244 (477)
T ss_dssp TTTT-------------------------------------------------TTCCCSEEEEESSCCCS-CCHHHH---
T ss_pred cccc-------------------------------------------------cCccccEEECcCCcccc-cCHHHh---
Confidence 3111 11234444444444432 222111
Q ss_pred ccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccC
Q 003813 359 FQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMN 438 (793)
Q Consensus 359 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 438 (793)
..+++|+.|++++|.+++..+..|.+
T Consensus 245 ------------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 245 ------------------------------------------------------RHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ------------------------------------------------------TTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ------------------------------------------------------cCccccCeeECCCCcCCccChhhccc
Confidence 12466777777777777677777778
Q ss_pred CCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCccccc
Q 003813 439 WPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGN 503 (793)
Q Consensus 439 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 503 (793)
+++|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++...
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 88888888888888877788888888888888888888877777778888888888888887643
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-33 Score=303.27 Aligned_cols=313 Identities=18% Similarity=0.203 Sum_probs=224.3
Q ss_pred CCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEE
Q 003813 261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLY 340 (793)
Q Consensus 261 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 340 (793)
++++.|++++|.+. .+|...+.++++|++|++++|.+....+..+..+.+|++|++++|.+.+..|..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34444444444443 33333444445555555554444444333444444444444444444445555556666666666
Q ss_pred eecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccE
Q 003813 341 ISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEF 420 (793)
Q Consensus 341 l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~ 420 (793)
+++|++.. +|... +..+++|++
T Consensus 124 L~~n~l~~-l~~~~---------------------------------------------------------~~~l~~L~~ 145 (390)
T 3o6n_A 124 LERNDLSS-LPRGI---------------------------------------------------------FHNTPKLTT 145 (390)
T ss_dssp CCSSCCCC-CCTTT---------------------------------------------------------TTTCTTCCE
T ss_pred CCCCccCc-CCHHH---------------------------------------------------------hcCCCCCcE
Confidence 66666542 22221 122577888
Q ss_pred EEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcc
Q 003813 421 FQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL 500 (793)
Q Consensus 421 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 500 (793)
|++++|.+++..+..|.++++|++|++++|++++. .+..+++|+.|++++|.+++. ...++|+.|++++|.+
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSI 217 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCee
Confidence 88888888877777888888888888888888854 255678888899988888753 3446788999999988
Q ss_pred cccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccC
Q 003813 501 VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASL 580 (793)
Q Consensus 501 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~ 580 (793)
. .+|... .++|++|++++|++++. ..+..+++|++|++++|.+.+..|..+.++++|
T Consensus 218 ~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------- 274 (390)
T 3o6n_A 218 N-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----------------- 274 (390)
T ss_dssp C-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------------
T ss_pred e-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----------------
Confidence 7 455432 57899999999998854 478888999999999999988778777666555
Q ss_pred CccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEEC
Q 003813 581 GDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDF 660 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 660 (793)
+.|++++|++++ +|..+..+++|++|++++|+++ .+|..++.+++|+.|++
T Consensus 275 ---------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 275 ---------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp ---------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred ---------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 789999999985 5667788999999999999999 67888999999999999
Q ss_pred CCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813 661 SANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS 695 (793)
Q Consensus 661 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 695 (793)
++|+++.. | +..+++|++|++++|+++|.+..
T Consensus 326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CCCcccee-C--chhhccCCEEEcCCCCccchhHH
Confidence 99999855 3 77889999999999999987543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-33 Score=319.21 Aligned_cols=333 Identities=17% Similarity=0.202 Sum_probs=241.8
Q ss_pred CCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEE
Q 003813 261 ANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLY 340 (793)
Q Consensus 261 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 340 (793)
.+++.+++++|.+. .+|...+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34445555554443 33333444555555555555554444444444444444444445555545555556666666666
Q ss_pred eecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccE
Q 003813 341 ISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEF 420 (793)
Q Consensus 341 l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~ 420 (793)
+++|.+++ +|... +..+++|+.
T Consensus 130 L~~n~l~~-l~~~~---------------------------------------------------------~~~l~~L~~ 151 (597)
T 3oja_B 130 LERNDLSS-LPRGI---------------------------------------------------------FHNTPKLTT 151 (597)
T ss_dssp CCSSCCCC-CCTTT---------------------------------------------------------TTTCTTCCE
T ss_pred eeCCCCCC-CCHHH---------------------------------------------------------hccCCCCCE
Confidence 66666543 22211 123678888
Q ss_pred EEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcc
Q 003813 421 FQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL 500 (793)
Q Consensus 421 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 500 (793)
|++++|.+++..|..|.++++|++|++++|.+++.. +..+++|+.|++++|.+++. ...++|+.|++++|.+
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSI 223 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcc
Confidence 888888888888888888999999999999988642 55678899999999988753 3456899999999988
Q ss_pred cccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccC
Q 003813 501 VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASL 580 (793)
Q Consensus 501 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~ 580 (793)
. .+|... .++|+.|++++|.+++ +..+..+++|+.|+|++|.+.+..|..+++++.|
T Consensus 224 ~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------- 280 (597)
T 3oja_B 224 N-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----------------- 280 (597)
T ss_dssp C-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------------
T ss_pred c-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-----------------
Confidence 7 455433 3689999999999986 3678889999999999999998888887776655
Q ss_pred CccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEEC
Q 003813 581 GDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDF 660 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 660 (793)
+.|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|
T Consensus 281 ---------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 281 ---------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp ---------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred ---------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 789999999986 5777788999999999999999 78888999999999999
Q ss_pred CCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCC
Q 003813 661 SANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAP 716 (793)
Q Consensus 661 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~ 716 (793)
++|.+++.. +..+++|++|++++|+++|.++.. .+..+....+.++ ..|+.+
T Consensus 332 ~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 332 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 999998653 677899999999999999986543 2444555556666 677754
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.5e-33 Score=297.84 Aligned_cols=129 Identities=22% Similarity=0.301 Sum_probs=97.0
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 495 (793)
++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++. |..+..+++|++|++
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDL 302 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEEC
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEEC
Confidence 4566666666666543 4566777777788877777777777777778888888888887753 455567888888888
Q ss_pred CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccc
Q 003813 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT 552 (793)
Q Consensus 496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 552 (793)
++|++. .+|..+. .+++|++|++++|+++.. + +..+++|+.|++++|++.+.
T Consensus 303 ~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 303 SHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 888887 6777766 688899999999988843 3 67788999999999998753
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.8e-34 Score=295.49 Aligned_cols=252 Identities=25% Similarity=0.421 Sum_probs=227.9
Q ss_pred CCCcEEEcccCcccc--cccchhhcccCCCCCccEEEccC-CcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCC
Q 003813 388 NLGSIFDLSNNALSG--SIFHLICQGENFSKNIEFFQLSK-NHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLS 464 (793)
Q Consensus 388 ~~l~~l~ls~n~l~~--~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 464 (793)
..++.+++++|.+.+ .+|..+. .+++|++|++++ |.+.+.+|..|.++++|++|++++|++++.+|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~----~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA----NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG----GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHh----CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 345666666666666 5665443 489999999995 999999999999999999999999999999999999999
Q ss_pred CccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcc-cCcEEEccCccccccCCccccCCCCcCEEE
Q 003813 465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS-RLIILNLRSNKFHGDFPIQLCRLASLQILD 543 (793)
Q Consensus 465 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 543 (793)
+|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+. .++ +|++|++++|++++.+|..+..++ |+.|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 999999999999999999999999999999999999999999888 576 999999999999999999999987 99999
Q ss_pred cccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcc
Q 003813 544 VAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPV 623 (793)
Q Consensus 544 Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 623 (793)
+++|++++..|..+.+++.| +.|++++|++++.+|.
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L--------------------------------------------~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNT--------------------------------------------QKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCC--------------------------------------------SEEECCSSEECCBGGG
T ss_pred CcCCcccCcCCHHHhcCCCC--------------------------------------------CEEECCCCceeeecCc
Confidence 99999998888877766655 7899999999977776
Q ss_pred ccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCc-ccc
Q 003813 624 EVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNN-LNG 691 (793)
Q Consensus 624 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g 691 (793)
+..+++|++|++++|++++.+|..++.+++|+.|++++|+++|.+|.. ..+++|+.+++++|+ ++|
T Consensus 240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred -ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 888999999999999999999999999999999999999999999987 889999999999999 555
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=284.02 Aligned_cols=305 Identities=21% Similarity=0.292 Sum_probs=160.2
Q ss_pred CCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCC
Q 003813 8 NLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSS 87 (793)
Q Consensus 8 ~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 87 (793)
.+++|++|+++++.++.+++ +..+++|++|++++|.+++++. +..+++|++|++++|.++.++ .+.++++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~~~--~~~~l~~ 111 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDIS--ALQNLTN 111 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred hcccccEEEEeCCccccchh----hhhcCCccEEEccCCccccchh----hhcCCcCCEEEccCCcccCch--HHcCCCc
Confidence 45555566665555543322 4455555566665555555422 445555556665555555543 3555555
Q ss_pred CCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcC
Q 003813 88 LTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLS 167 (793)
Q Consensus 88 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 167 (793)
|++|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+. .++. +..+++|++|+++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECT
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEcc
Confidence 55555555555532 22 5555555555555554333222 2555555555555555554 2222 4555555555555
Q ss_pred CCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCC
Q 003813 168 GNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNT 247 (793)
Q Consensus 168 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n 247 (793)
+|. +.+..+ +..+++ |+.+++++|.+.+..+ +..+++|++|++++|
T Consensus 186 ~n~-l~~~~~--~~~l~~-----------------------------L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 186 YNQ-IEDISP--LASLTS-----------------------------LHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp TSC-CCCCGG--GGGCTT-----------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred CCc-cccccc--ccCCCc-----------------------------cceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 554 322111 444444 5555555554433322 444455555555555
Q ss_pred cCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCC
Q 003813 248 TMDGSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFP 327 (793)
Q Consensus 248 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 327 (793)
.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+... +.+..+++|+.|++++|.+.+..+
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh
Confidence 5543322 4455555555555555442 21 344555555555555544432 234445555555566666555666
Q ss_pred cccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCcccc
Q 003813 328 LWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMY 372 (793)
Q Consensus 328 ~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~ 372 (793)
..+..+++|++|++++|++++..| ...+++|++|++++|.++
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 667777777777777777766544 445677777777777663
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.4e-31 Score=282.30 Aligned_cols=306 Identities=21% Similarity=0.284 Sum_probs=212.4
Q ss_pred CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCC
Q 003813 33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL 112 (793)
Q Consensus 33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 112 (793)
..+++|++|+++++.+..++. +..+++|++|++++|.++.+++ +.++++|++|++++|.++.. +++..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred hhcccccEEEEeCCccccchh----hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 345556666666665555432 3445556666666665555543 55555666666666555532 245555555
Q ss_pred CEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEcc
Q 003813 113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG 192 (793)
Q Consensus 113 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~ 192 (793)
++|++++|.+.+..+ +..+++|++|++++|.....++. +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~----------------------- 165 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTES----------------------- 165 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSS-----------------------
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCC-----------------------
Confidence 555555555554322 55555555555555543323222 455555555555555
Q ss_pred CCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCC
Q 003813 193 FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE 272 (793)
Q Consensus 193 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 272 (793)
.+.+..+ +..+ ++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.
T Consensus 166 --~~~~~~~--~~~l-----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 166 --KVKDVTP--IANL-----TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp --CCCCCGG--GGGC-----TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred --CcCCchh--hccC-----CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence 4433222 3333 788899999998865544 7889999999999999997655 8899999999999999
Q ss_pred CccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccCh
Q 003813 273 LNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPR 352 (793)
Q Consensus 273 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~ 352 (793)
+++ ++. +..+++|++|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|++|++++|++.+..+.
T Consensus 233 l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 233 ITD-LSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred cCC-Ccc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 984 333 88999999999999998764 4578889999999999999864 4688999999999999999875554
Q ss_pred hHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCccc
Q 003813 353 RFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALS 401 (793)
Q Consensus 353 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~ 401 (793)
. +..+++|++|++++|++++..| +.. ...++.+++++|.++
T Consensus 306 ~-l~~l~~L~~L~L~~n~l~~~~~-~~~------l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 V-IGGLTNLTTLFLSQNHITDIRP-LAS------LSKMDSADFANQVIK 346 (347)
T ss_dssp H-HHTCTTCSEEECCSSSCCCCGG-GGG------CTTCSEESSSCC---
T ss_pred H-hhccccCCEEEccCCccccccC-hhh------hhccceeehhhhccc
Confidence 4 4568999999999999987766 333 678999999999875
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.4e-31 Score=302.66 Aligned_cols=311 Identities=19% Similarity=0.233 Sum_probs=207.4
Q ss_pred CCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcE
Q 003813 109 LTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKS 188 (793)
Q Consensus 109 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 188 (793)
+.+++.+++++|.+..+.+..|..+++|++|++++|.+. .++...|+.+++|++|++++|. +.+..|..|+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----- 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV----- 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC-----
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCC-----
Confidence 456666666666666655555566666666666666665 3333235666666666666655 444444444444
Q ss_pred EEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEc
Q 003813 189 FSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDL 268 (793)
Q Consensus 189 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 268 (793)
++|++|++++|.+.+..+..|+.+++|++|++++|.+++..|..|+.+++|++|++
T Consensus 123 ------------------------~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 123 ------------------------PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp ------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred ------------------------CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 45555666666655544455566667777777777776666666666777777777
Q ss_pred cCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCcccc
Q 003813 269 SKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISA 348 (793)
Q Consensus 269 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 348 (793)
++|.+++. .+..+++|+.|++++|.+.+. ...++|+.|++++|.+..
T Consensus 179 ~~N~l~~~----~~~~l~~L~~L~l~~n~l~~l-----------------------------~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 179 SSNRLTHV----DLSLIPSLFHANVSYNLLSTL-----------------------------AIPIAVEELDASHNSINV 225 (597)
T ss_dssp TTSCCSBC----CGGGCTTCSEEECCSSCCSEE-----------------------------ECCTTCSEEECCSSCCCE
T ss_pred cCCCCCCc----ChhhhhhhhhhhcccCccccc-----------------------------cCCchhheeeccCCcccc
Confidence 77766532 234455555555555544321 111234444444443322
Q ss_pred ccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcc
Q 003813 349 KIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHF 428 (793)
Q Consensus 349 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l 428 (793)
. .+ ...++|+.|++++|.+
T Consensus 226 ~-------------------------~~------------------------------------~~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 226 V-------------------------RG------------------------------------PVNVELTILKLQHNNL 244 (597)
T ss_dssp E-------------------------EC------------------------------------SCCSCCCEEECCSSCC
T ss_pred c-------------------------cc------------------------------------ccCCCCCEEECCCCCC
Confidence 1 00 0025678888888888
Q ss_pred cccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhH
Q 003813 429 SGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWM 508 (793)
Q Consensus 429 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 508 (793)
++ +..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++. |..+..+++|+.|+|++|.++ .+|.++
T Consensus 245 ~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~ 320 (597)
T 3oja_B 245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQ 320 (597)
T ss_dssp CC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred CC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCccc
Confidence 75 36678888999999999999888888888899999999999998864 566677899999999999998 788877
Q ss_pred HhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccc
Q 003813 509 GERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT 552 (793)
Q Consensus 509 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 552 (793)
. .+++|++|++++|++++. | +..+++|+.|++++|++.+.
T Consensus 321 ~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 321 P-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp H-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred c-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 6 689999999999999854 3 67788999999999998764
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.6e-34 Score=316.09 Aligned_cols=389 Identities=16% Similarity=0.108 Sum_probs=192.9
Q ss_pred CCccEEEccCcccccccccc-cCCCCCCCEEeCcCCcCCC----CcchhhcCCCCCCEEEccCCCCccccChhhhhcCC-
Q 003813 213 NELESLDLGSCQIFGHMTNQ-LGRFKGLNFLDLSNTTMDG----SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLT- 286 (793)
Q Consensus 213 ~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 286 (793)
++|++|++++|+++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+...+..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34555555555554332222 4445555556665555553 23444555566666666666654332222223333
Q ss_pred ---CCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChhHHhc----cc
Q 003813 287 ---KLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNS----IF 359 (793)
Q Consensus 287 ---~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~----~~ 359 (793)
+|++|++++|.+..... ..++..+..+++|++|++++|.+.+..+..+... .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 34444444444321000 0224445556666666666666654434333322 12
Q ss_pred cccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCcc--
Q 003813 360 QYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWM-- 437 (793)
Q Consensus 360 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-- 437 (793)
+|++|++++| .+++.....+...+..+++|+.|++++|.+++..+..+.
T Consensus 143 ~L~~L~L~~n-----------------------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 193 (461)
T 1z7x_W 143 RLEKLQLEYC-----------------------------SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 193 (461)
T ss_dssp CCCEEECTTS-----------------------------CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred cceEEECCCC-----------------------------CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHH
Confidence 2333333333 333322222223333356666666666666544333332
Q ss_pred ---CCCCCCEEEccCCccccc----CCCCCCCCCCccEEEccCCcccccc-----CccccCCCCCCEEeCCCCccccc--
Q 003813 438 ---NWPRLRMLNLRNNNFTGS----LPMSIGTLSSLMSLNLRNNRLSGII-----PTSFNNFTILEALDMGENELVGN-- 503 (793)
Q Consensus 438 ---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~-- 503 (793)
..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++.
T Consensus 194 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~ 273 (461)
T 1z7x_W 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273 (461)
T ss_dssp HHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred HhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH
Confidence 244666666666666642 3444555666666666666665432 22223456666666666666532
Q ss_pred --CchhHHhhcccCcEEEccCccccccCCcccc-----CCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813 504 --IPTWMGERFSRLIILNLRSNKFHGDFPIQLC-----RLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF 576 (793)
Q Consensus 504 --~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 576 (793)
++..+. .+++|++|++++|++.+..+..+. ..++|+.|++++|.+++.....+
T Consensus 274 ~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l------------------- 333 (461)
T 1z7x_W 274 GDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF------------------- 333 (461)
T ss_dssp HHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH-------------------
T ss_pred HHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH-------------------
Confidence 344433 456666666666666533222222 12466666666666653211100
Q ss_pred cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccc-----ccCCceeeccCCcccc----cCCc
Q 003813 577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN-----LQGLQSLNFSYNLFTG----RIPD 647 (793)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~ 647 (793)
.......+.|+.||+++|.+++..+..+.. .++|++|++++|++++ .+|.
T Consensus 334 ---------------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 334 ---------------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp ---------------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ---------------------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 011112334466666666666544444432 4566777777776664 5666
Q ss_pred cccCcCCCCEEECCCCcCCCCCccccc-----CCCCCCeEEcccCcccc
Q 003813 648 NIGVMRSIESLDFSANQLSGYIPQSMS-----NLSFLNYLNLSNNNLNG 691 (793)
Q Consensus 648 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g 691 (793)
.+..+++|+.|++++|++++.....+. ....|+.|++.++.+..
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 666666777777777766643211111 23346666666555543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.3e-34 Score=315.00 Aligned_cols=381 Identities=19% Similarity=0.174 Sum_probs=190.5
Q ss_pred CCccEEEccCCCCCCCCCcc-CCCCCCCCEEECcCccCCC----cccccccCCCCCCEEeCcCCcCccCCcccc-cCCC-
Q 003813 62 PSLKELKLSFCKLHHFPPLS-SANFSSLTTLDLSENEFQG----QIPSRLGNLTSLKYLDLSFNQFNSVVPGWL-SKLN- 134 (793)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~- 134 (793)
++|++|++++|+++...... +..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46777777777776554322 5667777777777777763 235566677777777777777665333222 2333
Q ss_pred ---CCCEEEccCCcccc----ccChhhhcCCCCCcEEEcCCCCCCCCCCccccc-----CCCCCcEEEccCCcccccc--
Q 003813 135 ---DLEFLSLQSNRLQG----NISSLGLENLTSIQTLLLSGNDELGGKIPTSFG-----RFCKLKSFSTGFTNLSQDI-- 200 (793)
Q Consensus 135 ---~L~~L~L~~n~l~~----~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~-- 200 (793)
+|++|++++|.+.. .++.. +..+++|++|++++|. +.+..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 57777777777652 22332 6666677777777665 4332222221 2344555555555555432
Q ss_pred --hhHHhhhccccCCCccEEEccCcccccccccccC-----CCCCCCEEeCcCCcCCCC----cchhhcCCCCCCEEEcc
Q 003813 201 --SEILGIFSACVANELESLDLGSCQIFGHMTNQLG-----RFKGLNFLDLSNTTMDGS----IPLSLGQIANLEYLDLS 269 (793)
Q Consensus 201 --~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~ 269 (793)
+..+... ++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 161 ~l~~~l~~~-----~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 161 PLASVLRAK-----PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp HHHHHHHHC-----TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHhhC-----CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 2222222 4555555555554433322221 133555555555555432 23444445555555555
Q ss_pred CCCCccccC----hhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCC----CCcccccCCCCCeEEe
Q 003813 270 KNELNGTVS----EIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPR----FPLWLQSQKKLNDLYI 341 (793)
Q Consensus 270 ~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l 341 (793)
+|.+.+... ...+..+++|++|++ ++|.++.. ++..+..+++|++|++
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L------------------------~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWI------------------------WECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEEC------------------------TTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEEC------------------------cCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 554432110 101112333333333 33333321 3444555666666666
Q ss_pred ecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCCCccEE
Q 003813 342 SSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFF 421 (793)
Q Consensus 342 ~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L 421 (793)
++|.+.+..+..+...+. ...++|+.|
T Consensus 292 s~n~i~~~~~~~l~~~l~-----------------------------------------------------~~~~~L~~L 318 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLL-----------------------------------------------------EPGCQLESL 318 (461)
T ss_dssp TTCCCHHHHHHHHHHHHT-----------------------------------------------------STTCCCCEE
T ss_pred CCCCCchHHHHHHHHHhc-----------------------------------------------------cCCccceee
Confidence 666665433333322110 002345555
Q ss_pred EccCCccccc----CCCCccCCCCCCEEEccCCcccccCCCCCCC-----CCCccEEEccCCcccc----ccCccccCCC
Q 003813 422 QLSKNHFSGE----IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGT-----LSSLMSLNLRNNRLSG----IIPTSFNNFT 488 (793)
Q Consensus 422 ~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~ 488 (793)
++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 5555555433 2334444555666666666555433322221 4466666666666654 4455555566
Q ss_pred CCCEEeCCCCcccccCchhHHhh----cccCcEEEccCcccc
Q 003813 489 ILEALDMGENELVGNIPTWMGER----FSRLIILNLRSNKFH 526 (793)
Q Consensus 489 ~L~~L~L~~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~ 526 (793)
+|++|++++|++++.-...+.+. ..+|+.|.+.++.+.
T Consensus 399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 66666666666553322222211 224666666655554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.5e-29 Score=264.42 Aligned_cols=253 Identities=22% Similarity=0.232 Sum_probs=208.1
Q ss_pred CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813 35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY 114 (793)
Q Consensus 35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 114 (793)
..++++++++++.++.+|.. -.+++++|++++|+++++++..|.++++|++|++++|.+++..|.+|.++++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKD-----LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp EEETTEEECTTSCCCSCCCS-----CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred cCCCeEEEecCCCccccCcc-----CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 34788999999988887652 2368899999999999998888999999999999999999877889999999999
Q ss_pred EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCC--CCCcccccCCCCCcEEEcc
Q 003813 115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELG--GKIPTSFGRFCKLKSFSTG 192 (793)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~l~~l~~L~~L~l~ 192 (793)
|++++|.++. +|..+. ++|++|++++|.+. .++...+.++++|++|++++|. +. +..+..+..+++|+.|+++
T Consensus 105 L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 105 LYLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp EECCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECC
T ss_pred EECCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECC
Confidence 9999999886 454443 78999999999998 6666668999999999999987 54 3667788889999999999
Q ss_pred CCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCC
Q 003813 193 FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNE 272 (793)
Q Consensus 193 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 272 (793)
.|.++. +|..+ .++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 180 ~n~l~~-l~~~~-------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 180 DTNITT-IPQGL-------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp SSCCCS-CCSSC-------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred CCcccc-CCccc-------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 888775 33322 1679999999999888888888899999999999999988777788889999999999998
Q ss_pred CccccChhhhhcCCCCcEEECCCCeeeeecCCCCC
Q 003813 273 LNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWV 307 (793)
Q Consensus 273 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 307 (793)
++ .+|. .+..+++|++|++++|+++......|.
T Consensus 252 l~-~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 252 LV-KVPG-GLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp CS-SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred Cc-cCCh-hhccCCCcCEEECCCCcCCccChhhcC
Confidence 87 6665 578888899999998888766555553
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.8e-30 Score=268.41 Aligned_cols=288 Identities=20% Similarity=0.223 Sum_probs=232.8
Q ss_pred CcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEE
Q 003813 36 SLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYL 115 (793)
Q Consensus 36 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 115 (793)
.+++.++++++.++.+|.. + .++|++|++++|.++++++..|.++++|++|++++|.+++..|.+|.++++|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~---~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE---I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSSCCSC---C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCCccccCCC---C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 4789999999999887653 2 3789999999999999988889999999999999999998888899999999999
Q ss_pred eCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCC--CCCcccccCCCCCcEEEccC
Q 003813 116 DLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELG--GKIPTSFGRFCKLKSFSTGF 193 (793)
Q Consensus 116 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~l~~l~~L~~L~l~~ 193 (793)
++++|.++. +|..+. ++|++|++++|.+. .++...+.++++|++|++++|. +. +..+..+..+ +|+.|+++.
T Consensus 108 ~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 108 YISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp ECCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred ECCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcC
Confidence 999999986 454443 79999999999998 6666668999999999999998 54 4667788888 999999999
Q ss_pred CcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 003813 194 TNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNEL 273 (793)
Q Consensus 194 n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 273 (793)
|.+++ +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.++..+++|++|++++|++
T Consensus 182 n~l~~-l~~~~-------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 182 AKLTG-IPKDL-------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp SBCSS-CCSSS-------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCc-cCccc-------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 99876 44332 16899999999999988888999999999999999999988888899999999999999999
Q ss_pred ccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCc------ccccEEEccCccCC--CCCCcccccCCCCCeEEeecC
Q 003813 274 NGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPP------FQLTGLGVRSCRLG--PRFPLWLQSQKKLNDLYISST 344 (793)
Q Consensus 274 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n 344 (793)
+ .+|. .+..+++|+.|++++|+++......|... ..++.+++++|++. ...|.++..+++|+.+++++|
T Consensus 254 ~-~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 254 S-RVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp C-BCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred e-ecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 8 6776 58899999999999999987666555432 34556666666554 334444555555555555544
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.2e-30 Score=269.74 Aligned_cols=221 Identities=20% Similarity=0.269 Sum_probs=168.2
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccc--cccCccccCCCCCCE
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLS--GIIPTSFNNFTILEA 492 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~ 492 (793)
+++|++|++++|.++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.++ +..+..+..+ +|+.
T Consensus 101 l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred cCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 566777777777766 3444333 67788888888877666666777788888888888775 3566777777 7888
Q ss_pred EeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCC
Q 003813 493 LDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQS 572 (793)
Q Consensus 493 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~ 572 (793)
|++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 177 L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------- 243 (332)
T 2ft3_A 177 LRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL--------- 243 (332)
T ss_dssp CBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC---------
T ss_pred EECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC---------
Confidence 888888887 4666543 678888888888887777788888889999999988887666566555444
Q ss_pred CccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCc
Q 003813 573 NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM 652 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 652 (793)
+.|++++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus 244 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 244 -----------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp -----------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred -----------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 78899999888 788888999999999999999997777777653
Q ss_pred ------CCCCEEECCCCcCC--CCCcccccCCCCCCeEEcccCc
Q 003813 653 ------RSIESLDFSANQLS--GYIPQSMSNLSFLNYLNLSNNN 688 (793)
Q Consensus 653 ------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 688 (793)
..|+.|++++|.+. +..|..|..++.|+.+++++|+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 67899999999987 6778889999999999998874
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-29 Score=267.07 Aligned_cols=222 Identities=19% Similarity=0.269 Sum_probs=124.2
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCcccc--ccCccccCCCCCCE
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSG--IIPTSFNNFTILEA 492 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 492 (793)
+++|++|++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+.++++|++
T Consensus 99 l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 99 LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 344555555555554 2233222 455555555555555444455555555666665555542 44555556666666
Q ss_pred EeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCC
Q 003813 493 LDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQS 572 (793)
Q Consensus 493 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~ 572 (793)
|++++|.++ .+|..+. ++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|
T Consensus 176 L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------- 242 (330)
T 1xku_A 176 IRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL--------- 242 (330)
T ss_dssp EECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC---------
T ss_pred EECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC---------
Confidence 666666655 4554332 456666666666665555666666666666666666655444444433333
Q ss_pred CccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccC-
Q 003813 573 NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGV- 651 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~- 651 (793)
+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 243 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 243 -----------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp -----------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred -----------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence 56666666666 55666666666666666666666555555533
Q ss_pred -----cCCCCEEECCCCcCCC--CCcccccCCCCCCeEEcccCc
Q 003813 652 -----MRSIESLDFSANQLSG--YIPQSMSNLSFLNYLNLSNNN 688 (793)
Q Consensus 652 -----l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 688 (793)
.+.|+.|++++|.+.. ..|..|..++.++.+++++|+
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2556666666666653 445666666666666666663
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.6e-29 Score=259.51 Aligned_cols=254 Identities=20% Similarity=0.229 Sum_probs=216.8
Q ss_pred cEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccccc--CCCCCCCCCCccE
Q 003813 391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGS--LPMSIGTLSSLMS 468 (793)
Q Consensus 391 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~ 468 (793)
+.++++++.++.. |.. ..++++.|++++|.++...+..|.++++|++|++++|+++.. .+..+..+++|++
T Consensus 10 ~~l~c~~~~l~~i-p~~------~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTG------IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TEEECCSSCCSSC-CSC------CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CEEEcCCCCcccC-CCC------CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 4556666655432 221 146899999999999976666789999999999999999843 3566778999999
Q ss_pred EEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCc
Q 003813 469 LNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN 548 (793)
Q Consensus 469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 548 (793)
|++++|.+++ +|..+..+++|++|++++|++++..+...+..+++|++|++++|++.+..+..+..+++|++|++++|.
T Consensus 83 L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 9999999985 566799999999999999999844432344479999999999999998888889999999999999999
Q ss_pred ccc-ccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccc
Q 003813 549 LSG-TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN 627 (793)
Q Consensus 549 l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 627 (793)
+.+ .+|..+..+++| +.|++++|++++..|..+..
T Consensus 162 l~~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 162 FQENFLPDIFTELRNL--------------------------------------------TFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp EGGGEECSCCTTCTTC--------------------------------------------CEEECTTSCCCEECTTTTTT
T ss_pred cccccchhHHhhCcCC--------------------------------------------CEEECCCCCcCCcCHHHhcC
Confidence 986 567776665554 88999999999988999999
Q ss_pred ccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCC-CCCeEEcccCcccccCCCC
Q 003813 628 LQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLS-FLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 628 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~ 696 (793)
+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|+++|.++..
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 99999999999999988888899999999999999999999999999985 9999999999999988754
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.1e-28 Score=269.00 Aligned_cols=253 Identities=22% Similarity=0.237 Sum_probs=219.3
Q ss_pred CcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEE
Q 003813 390 GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSL 469 (793)
Q Consensus 390 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 469 (793)
...++.++..++. +|..+ .++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 56 ~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEECCCCcCc-cCCCC------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 3456666666554 33222 4789999999999999999999999999999999999999888999999999999
Q ss_pred EccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcc-ccccCCccccCCCCcCEEEcccCc
Q 003813 470 NLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNK-FHGDFPIQLCRLASLQILDVAYNN 548 (793)
Q Consensus 470 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~ 548 (793)
+|++|++++..+..|.++++|++|++++|++. .+|...+..+++|++|++++|. +....+..+..+++|+.|++++|+
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 99999999888888999999999999999998 6666666689999999999954 444444568899999999999999
Q ss_pred cccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccc
Q 003813 549 LSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNL 628 (793)
Q Consensus 549 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 628 (793)
+++ +| .+.. ++.|+.|+|++|++++..|..|.++
T Consensus 208 l~~-~~-~~~~--------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 208 IKD-MP-NLTP--------------------------------------------LVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp CSS-CC-CCTT--------------------------------------------CTTCCEEECTTSCCSEECGGGGTTC
T ss_pred ccc-cc-cccc--------------------------------------------cccccEEECcCCcCcccCcccccCc
Confidence 974 33 2333 3446899999999999999999999
Q ss_pred cCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813 629 QGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 629 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|...
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 99999999999999999999999999999999999999888889999999999999999999998754
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.7e-29 Score=259.70 Aligned_cols=227 Identities=16% Similarity=0.236 Sum_probs=202.4
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
.+.++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999999998 67888888999999999999999 88889999999999999999999 6788899999999999
Q ss_pred CCCCcccccCchhHH--------hhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccc
Q 003813 495 MGENELVGNIPTWMG--------ERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATT 566 (793)
Q Consensus 495 L~~N~l~~~~p~~~~--------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~ 566 (793)
+++|++.+.+|..+. ..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+.++++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L--- 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL--- 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence 999988888988764 14889999999999999 788889999999999999999984 56556655544
Q ss_pred cCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCC
Q 003813 567 DSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIP 646 (793)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 646 (793)
+.|++++|++.+.+|..++++++|++|+|++|++.+.+|
T Consensus 232 -----------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 232 -----------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp -----------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred -----------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 789999999999999999999999999999999999999
Q ss_pred ccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccc
Q 003813 647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLN 690 (793)
Q Consensus 647 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 690 (793)
..++++++|+.|++++|++.+.+|..+.++++|+.+++..|.+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999977654
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=266.62 Aligned_cols=253 Identities=22% Similarity=0.226 Sum_probs=217.8
Q ss_pred CcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEE
Q 003813 390 GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSL 469 (793)
Q Consensus 390 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 469 (793)
...++.++..++. +|..+ .++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 45 ~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGI------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp SCEEECCSCCCSS-CCSCC------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCEEEeCCCCcCc-CCCCC------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 3456666665553 33222 3789999999999999888999999999999999999998888899999999999
Q ss_pred EccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCcc-ccccCCccccCCCCcCEEEcccCc
Q 003813 470 NLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNK-FHGDFPIQLCRLASLQILDVAYNN 548 (793)
Q Consensus 470 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~ 548 (793)
+|++|++++..+..|.++++|++|++++|++. .+|...+..+++|++|++++|. +....+..|.++++|+.|++++|+
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 99999999888888999999999999999998 5666555589999999999954 444444578899999999999999
Q ss_pred cccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccc
Q 003813 549 LSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNL 628 (793)
Q Consensus 549 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 628 (793)
++ .+|. +.. ++.|+.|||++|++++..|..|.++
T Consensus 197 l~-~~~~-~~~--------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 197 LR-EIPN-LTP--------------------------------------------LIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp CS-SCCC-CTT--------------------------------------------CSSCCEEECTTSCCCEECTTTTTTC
T ss_pred Cc-cccc-cCC--------------------------------------------CcccCEEECCCCccCccChhhhccC
Confidence 97 4442 333 3446899999999999999999999
Q ss_pred cCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813 629 QGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 629 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|...
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 99999999999999999999999999999999999999888889999999999999999999998754
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.3e-30 Score=296.11 Aligned_cols=424 Identities=15% Similarity=0.081 Sum_probs=230.6
Q ss_pred hCCCCCccEEEccCCCCC---CCCCccCC------------CCCCCCEEECcCccCCCcccccccCC-C-CCCEEeCcCC
Q 003813 58 INSLPSLKELKLSFCKLH---HFPPLSSA------------NFSSLTTLDLSENEFQGQIPSRLGNL-T-SLKYLDLSFN 120 (793)
Q Consensus 58 ~~~l~~L~~L~Ls~n~l~---~~~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~l-~-~L~~L~Ls~n 120 (793)
+..+++|++|++++|... +..+..++ .+++|++|+|++|.+++..+..+... + +|++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 445667777777665321 11111111 56777777777777765555555543 3 4777777776
Q ss_pred cC-cc-CCcccccCCCCCCEEEccCCccccc----cChhhhcCCCCCcEEEcCCCCCCC----CCCcccccCCCCCcEEE
Q 003813 121 QF-NS-VVPGWLSKLNDLEFLSLQSNRLQGN----ISSLGLENLTSIQTLLLSGNDELG----GKIPTSFGRFCKLKSFS 190 (793)
Q Consensus 121 ~l-~~-~~~~~~~~l~~L~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~L~~n~~~~----~~~~~~l~~l~~L~~L~ 190 (793)
.- .. .++.....+++|++|++++|.+.+. ++.. +..+++|++|++++|. +. +.++..+.++++|+.|+
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL-AQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH-HHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH-HhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEe
Confidence 51 11 1122223677777888877776533 2222 4567777777777776 44 23344456677777777
Q ss_pred ccCCcccccchhHHhhhccccCCCccEEEccCcccc---cccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEE
Q 003813 191 TGFTNLSQDISEILGIFSACVANELESLDLGSCQIF---GHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLD 267 (793)
Q Consensus 191 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 267 (793)
++.+.+.+ ++..+..+ ++|++|+++++... +..+..+..+++|+.|+++++... .+|..+..+++|++|+
T Consensus 227 L~~~~~~~-l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 227 VGDFEILE-LVGFFKAA-----ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLD 299 (592)
T ss_dssp CSSCBGGG-GHHHHHHC-----TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEE
T ss_pred ccCccHHH-HHHHHhhh-----hHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEe
Confidence 77776665 55666665 77777777753322 223345666777777777775433 5666677777788888
Q ss_pred ccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeec----
Q 003813 268 LSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISS---- 343 (793)
Q Consensus 268 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~---- 343 (793)
+++|.+++......+.++++|++|+++ +.+... .++.....+++|++|++++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~-----------------------~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR-----------------------GLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH-----------------------HHHHHHHHCTTCCEEEEECCCCS
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH-----------------------HHHHHHHhCCCCCEEEeecCccc
Confidence 877776544333345667777777766 222111 1122223445555555552
Q ss_pred -------CccccccChhHHhccccccEEEeeCccccccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhcccCCCC
Q 003813 344 -------TRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQGENFSK 416 (793)
Q Consensus 344 -------n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~ 416 (793)
+.+++.....+...+++|++|+++.|.+++ ..+..+.. .++
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~-----------------------------~~~~~l~~---~~~ 403 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN-----------------------------ESLESIGT---YLK 403 (592)
T ss_dssp STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH-----------------------------HHHHHHHH---HCC
T ss_pred cccccccCccCHHHHHHHHhhCccCeEEEeecCCccH-----------------------------HHHHHHHh---hCC
Confidence 333332222333334444444444333322 11111111 134
Q ss_pred CccEEEcc----CCccccc-----CCCCccCCCCCCEEEccCCc--ccccCCCCCC-CCCCccEEEccCCccccc-cCcc
Q 003813 417 NIEFFQLS----KNHFSGE-----IPDCWMNWPRLRMLNLRNNN--FTGSLPMSIG-TLSSLMSLNLRNNRLSGI-IPTS 483 (793)
Q Consensus 417 ~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~ 483 (793)
+|+.|+++ .|.+++. ++..+.++++|++|++++|. +++..+..+. .+++|++|++++|++++. .+..
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 483 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence 55555554 3444432 22224456667777775432 4433332222 256677777777776642 3344
Q ss_pred ccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccc-cCCCCcCEEEccc
Q 003813 484 FNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL-CRLASLQILDVAY 546 (793)
Q Consensus 484 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~ 546 (793)
+.++++|++|++++|++++.....+...+++|++|++++|++++.-...+ ..++.+....+..
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 46677777777777776544334444457777777777777664422222 2445555444443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.1e-28 Score=253.52 Aligned_cols=235 Identities=20% Similarity=0.219 Sum_probs=178.2
Q ss_pred cEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCC
Q 003813 419 EFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGEN 498 (793)
Q Consensus 419 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 498 (793)
+.++.+++.++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666666663 34433 356777777777777666666777777777777777777776777777777777777777
Q ss_pred c-ccccC-chhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813 499 E-LVGNI-PTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF 576 (793)
Q Consensus 499 ~-l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 576 (793)
+ +. .+ |..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+.++++|
T Consensus 91 ~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------- 155 (285)
T 1ozn_A 91 AQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL------------- 155 (285)
T ss_dssp TTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-------------
Confidence 6 55 44 33333 67778888888888777667777788888888888888875555445554443
Q ss_pred cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCC
Q 003813 577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE 656 (793)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 656 (793)
+.|++++|++++..+..+..+++|++|++++|++++..|..|+.+++|+
T Consensus 156 -------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 156 -------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp -------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred -------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 7788888888877777788999999999999999988899999999999
Q ss_pred EEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCc
Q 003813 657 SLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 702 (793)
Q Consensus 657 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~ 702 (793)
.|++++|++++..+..+..+++|++|++++|++.|.++..+...++
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 9999999999887788999999999999999999988765433333
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=264.21 Aligned_cols=259 Identities=17% Similarity=0.198 Sum_probs=168.8
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 495 (793)
++|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 45666666666666555555666666666666666666555555666666666666666666544444566666666666
Q ss_pred CCCcccccCch-hHHhhcccCcEEEccCc-cccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813 496 GENELVGNIPT-WMGERFSRLIILNLRSN-KFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN 573 (793)
Q Consensus 496 ~~N~l~~~~p~-~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 573 (793)
++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++.+..|..+.++++|+.++...+..
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 666665 4444 22335666666666666 34444445566666666666666666655566666665555544333211
Q ss_pred ccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccc---cccCCceeeccCCcccc----cCC
Q 003813 574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVT---NLQGLQSLNFSYNLFTG----RIP 646 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p 646 (793)
..........++.|+.|++++|++++..+..+. ....++.++++++.+++ .+|
T Consensus 211 --------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 211 --------------------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp --------------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred --------------------ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 011112233467789999999999876655443 45678888888888876 478
Q ss_pred ccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813 647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS 695 (793)
Q Consensus 647 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 695 (793)
+.++.+++|+.|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 8899999999999999999944444469999999999999999999884
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.1e-30 Score=293.91 Aligned_cols=386 Identities=12% Similarity=0.023 Sum_probs=228.1
Q ss_pred CCCCCCEEeCcCCcCCCCcchhhcC-CC-CCCEEEccCCC-CccccChhhhhcCCCCcEEECCCCeeeeecC----CCCC
Q 003813 235 RFKGLNFLDLSNTTMDGSIPLSLGQ-IA-NLEYLDLSKNE-LNGTVSEIHFVNLTKLVTFRANGNSLIFKIN----PNWV 307 (793)
Q Consensus 235 ~l~~L~~L~L~~n~l~~~~~~~l~~-l~-~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~ 307 (793)
.+++|++|++++|.+++..+.+++. ++ +|++|++++|. +..........++++|++|++++|.+.+... ....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5566777777777666555555544 23 37777776665 1111111123466777777777776543311 1122
Q ss_pred CcccccEEEccCccCC----CCCCcccccCCCCCeEEeecCccccccChhHHhccccccEEEeeCccccccCCCCCCCCC
Q 003813 308 PPFQLTGLGVRSCRLG----PRFPLWLQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMYGGVPKFDSPSM 383 (793)
Q Consensus 308 ~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 383 (793)
.+++|++|+++.|.+. ..++..+..+++|++|++++|.+.+ ++ ..+..+++|+.|+++..... .+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~--~~~------ 259 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNED--IGM------ 259 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCC--TTC------
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccc--cch------
Confidence 3456666666666654 2344456678888888888888765 44 44556778888888753211 110
Q ss_pred CccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCC-CCCCC
Q 003813 384 PLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLP-MSIGT 462 (793)
Q Consensus 384 ~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 462 (793)
......+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..
T Consensus 260 ----------------------~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 260 ----------------------PEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp ----------------------TTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred ----------------------HHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 00012233356777777776533 3456666677788888888877654332 23466
Q ss_pred CCCccEEEccCCccccccCccccCCCCCCEEeCC-----------CCcccccCchhHHhhcccCcEEEccCccccccCCc
Q 003813 463 LSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG-----------ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI 531 (793)
Q Consensus 463 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-----------~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 531 (793)
+++|++|+++++-..+.++..+..+++|++|+++ .|.+++.....+...+++|++|+++.|.+++..+.
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 7788888887333333334444667778888887 35555433333344677888888877777766555
Q ss_pred cccC-CCCcCEEEcc----cCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccc
Q 003813 532 QLCR-LASLQILDVA----YNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNL 606 (793)
Q Consensus 532 ~~~~-l~~L~~L~Ls----~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
.+.. +++|+.|+++ .|.+++...+. + .......++.
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--------------------------------------~-~~~~~~~~~~ 437 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDN--------------------------------------G-VRSLLIGCKK 437 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHH--------------------------------------H-HHHHHHHCTT
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHH--------------------------------------H-HHHHHHhCCC
Confidence 5554 7778888886 44554310000 0 0011222455
Q ss_pred eeEEEcccCc--ceeeCcccccc-ccCCceeeccCCcccc-cCCccccCcCCCCEEECCCCcCCCC-CcccccCCCCCCe
Q 003813 607 VRGIDISKNN--FSGEVPVEVTN-LQGLQSLNFSYNLFTG-RIPDNIGVMRSIESLDFSANQLSGY-IPQSMSNLSFLNY 681 (793)
Q Consensus 607 L~~L~Ls~N~--l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~ 681 (793)
|+.|++++|. +++..+..+.. +++|++|++++|++++ .++..+..+++|+.|++++|.+++. ++.....+++|++
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 6777776433 55555554443 6778888888888775 3445556778888888888887644 3444456778888
Q ss_pred EEcccCccccc
Q 003813 682 LNLSNNNLNGE 692 (793)
Q Consensus 682 L~ls~N~l~g~ 692 (793)
|++++|++++.
T Consensus 518 L~ls~n~it~~ 528 (592)
T 3ogk_B 518 LWVQGYRASMT 528 (592)
T ss_dssp EEEESCBCCTT
T ss_pred eECcCCcCCHH
Confidence 88888877654
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.9e-28 Score=255.03 Aligned_cols=280 Identities=19% Similarity=0.195 Sum_probs=218.4
Q ss_pred CCCCCCcEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCC
Q 003813 7 GNLSNLQYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFS 86 (793)
Q Consensus 7 ~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 86 (793)
..++.....|.+++.++.+|..+ .++|++|++++|.+++++. ..+.++++|++|++++|+++++++..|.+++
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~-----~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGL-----TEAVKSLDLSNNRITYISN--SDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTC-----CTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCCeEeeCCCCCcccccccc-----cccCcEEECCCCcCcccCH--HHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 34566667888888888777654 2589999999999887643 2467889999999999999988887888999
Q ss_pred CCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCc-ccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEE
Q 003813 87 SLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVP-GWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLL 165 (793)
Q Consensus 87 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 165 (793)
+|++|++++|.+++..+..|.++++|++|++++|++++..+ ..+.++++|++|++++|...+.++...++++++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 99999999999986666668889999999999999887544 47888999999999998533366555588899999999
Q ss_pred cCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccC---CCCCCCEE
Q 003813 166 LSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLG---RFKGLNFL 242 (793)
Q Consensus 166 L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~---~l~~L~~L 242 (793)
+++|. +.+..|..+..+++|++|++++|.+.......+..+ ++|++|++++|.+.+..+..+. ....++.+
T Consensus 181 l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 181 IDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-----SSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp EEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-----TTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred CCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhc-----ccccEEECCCCccccccccccccccccchhhcc
Confidence 99988 788888889999999999999988864333334444 7899999999988776554433 45678888
Q ss_pred eCcCCcCCC----CcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeee
Q 003813 243 DLSNTTMDG----SIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIF 300 (793)
Q Consensus 243 ~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 300 (793)
+++++.+++ .+|.++..+++|++|++++|+++ .+|...|.++++|++|++++|++.+
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 888888775 35677888888888888888887 6666567788888888888887754
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.9e-27 Score=247.29 Aligned_cols=249 Identities=21% Similarity=0.244 Sum_probs=164.6
Q ss_pred cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCc--ccccccCCCCCCEEe
Q 003813 39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQ--IPSRLGNLTSLKYLD 116 (793)
Q Consensus 39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~ 116 (793)
+.++++++.++.+|.. -.++|++|++++|+++.+++..|.++++|++|++++|.++.. .+.++..+++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~~-----~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-----IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCSC-----CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCCC-----CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 4567777777666542 225677777777777777776677777788888877777632 255666777888888
Q ss_pred CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcc
Q 003813 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNL 196 (793)
Q Consensus 117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 196 (793)
+++|.+.. +|..+..+++|++|++++|.+.+..+...+..+++|++|++++|. +.+..+..+..+++|+.|++++|.+
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcc
Confidence 88877765 555677777888888888777733322347777777777777776 6666666666666666666666666
Q ss_pred cc-cchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCcc
Q 003813 197 SQ-DISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNG 275 (793)
Q Consensus 197 ~~-~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 275 (793)
++ .+|..+..+ ++|++|++++|++.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 163 ~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 163 QENFLPDIFTEL-----RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp GGGEECSCCTTC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred ccccchhHHhhC-----cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 54 344444444 666667777766666666666666777777777777666555566666677777777776665
Q ss_pred ccChhhhhcCC-CCcEEECCCCeeee
Q 003813 276 TVSEIHFVNLT-KLVTFRANGNSLIF 300 (793)
Q Consensus 276 ~~~~~~~~~l~-~L~~L~l~~n~l~~ 300 (793)
..+. .+..++ +|++|++++|++.+
T Consensus 238 ~~~~-~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 238 SKKQ-ELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CSSS-SCCCCCTTCCEEECTTCCEEC
T ss_pred cCHH-HHHhhhccCCEEEccCCCeec
Confidence 4443 455553 56666666666543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.9e-28 Score=246.87 Aligned_cols=253 Identities=17% Similarity=0.170 Sum_probs=213.5
Q ss_pred cEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEE
Q 003813 391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLN 470 (793)
Q Consensus 391 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 470 (793)
..++++++.+... |.. ..++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 14 ~~~~c~~~~l~~i-p~~------~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVG------IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSC-CTT------CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccC-CcC------CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 4566666665542 221 257899999999999988888999999999999999999988899999999999999
Q ss_pred ccCCc-cccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcc
Q 003813 471 LRNNR-LSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549 (793)
Q Consensus 471 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 549 (793)
+++|. +....|..|..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 99997 8877789999999999999999999865555554 799999999999999977777799999999999999999
Q ss_pred ccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccccc
Q 003813 550 SGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQ 629 (793)
Q Consensus 550 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 629 (793)
++..+..+.++++ |+.|++++|++++..|..+.+++
T Consensus 166 ~~~~~~~~~~l~~--------------------------------------------L~~L~l~~n~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 166 SSVPERAFRGLHS--------------------------------------------LDRLLLHQNRVAHVHPHAFRDLG 201 (285)
T ss_dssp CEECTTTTTTCTT--------------------------------------------CCEEECCSSCCCEECTTTTTTCT
T ss_pred cccCHHHhcCccc--------------------------------------------cCEEECCCCcccccCHhHccCcc
Confidence 8655555655554 48899999999999999999999
Q ss_pred CCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813 630 GLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 630 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
+|++|++++|++++..++.+..+++|+.|++++|.+....+.. .-...++.+..+.+.+.|..|..
T Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 9999999999999877778999999999999999998654421 12234566668889999998864
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.6e-27 Score=249.28 Aligned_cols=205 Identities=17% Similarity=0.267 Sum_probs=188.2
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccC-------
Q 003813 414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNN------- 486 (793)
Q Consensus 414 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------- 486 (793)
.+++|++|++++|.++ .+|..+.++++|++|++++|+++ .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 3789999999999999 88999999999999999999999 77889999999999999999988888877654
Q ss_pred --CCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCc
Q 003813 487 --FTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMA 564 (793)
Q Consensus 487 --l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 564 (793)
+++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++++|++.+.+|..++++++|
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L- 255 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL- 255 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC-
T ss_pred ccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC-
Confidence 999999999999998 8998876 79999999999999995 67789999999999999999999999888776665
Q ss_pred cccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCccccc
Q 003813 565 TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR 644 (793)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 644 (793)
+.|+|++|++.+.+|..++++++|++|+|++|++.+.
T Consensus 256 -------------------------------------------~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 256 -------------------------------------------KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp -------------------------------------------CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred -------------------------------------------CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 7899999999999999999999999999999999999
Q ss_pred CCccccCcCCCCEEECCCCcCCC
Q 003813 645 IPDNIGVMRSIESLDFSANQLSG 667 (793)
Q Consensus 645 ~p~~l~~l~~L~~L~Ls~N~l~~ 667 (793)
+|+.++++++|+.+++..|.+..
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGSCC
T ss_pred ccHHHhhccCceEEeCCHHHHHH
Confidence 99999999999999999887763
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.2e-29 Score=258.67 Aligned_cols=208 Identities=21% Similarity=0.307 Sum_probs=126.1
Q ss_pred CCCccEEEccCCcccccCCCCc--cCCCCCCEEEccCCcccccCCCCCCCC-----CCccEEEccCCccccccCccccCC
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCW--MNWPRLRMLNLRNNNFTGSLPMSIGTL-----SSLMSLNLRNNRLSGIIPTSFNNF 487 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l 487 (793)
+++|++|++++|++++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..|.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4556666666666655555544 5555666666666666544 4444444 555555555555555555555555
Q ss_pred CCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccc--cCCCCcCEEEcccCccccccCccccccccCcc
Q 003813 488 TILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQL--CRLASLQILDVAYNNLSGTIPRCINNFSAMAT 565 (793)
Q Consensus 488 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 565 (793)
++|++|++++|++.+.++ .|..+ ..+++|++|++++|++++. +..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~--------- 219 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERG-----------------------LISALCPLKFPTLQVLALRNAGMETP-SGV--------- 219 (312)
T ss_dssp SSCCEEECCSCTTCHHHH-----------------------HHHHSCTTSCTTCCEEECTTSCCCCH-HHH---------
T ss_pred CCCCEEECCCCCcCcchH-----------------------HHHHHHhccCCCCCEEECCCCcCcch-HHH---------
Confidence 555555555555443211 11122 4556666666666665421 100
Q ss_pred ccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCc-cccccccCCceeeccCCccccc
Q 003813 566 TDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVP-VEVTNLQGLQSLNFSYNLFTGR 644 (793)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ 644 (793)
.......++.|+.||+++|++++.+| ..+..+++|++|+|++|+++ .
T Consensus 220 -------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 267 (312)
T 1wwl_A 220 -------------------------------CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267 (312)
T ss_dssp -------------------------------HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-S
T ss_pred -------------------------------HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-h
Confidence 00011123345667777777766554 34566788888888888888 7
Q ss_pred CCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813 645 IPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE 692 (793)
Q Consensus 645 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 692 (793)
+|..+. ++|+.|||++|++++. |. +..+++|++|++++|++++.
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 777776 7888888888888866 65 88888888888888888763
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.4e-26 Score=251.38 Aligned_cols=252 Identities=19% Similarity=0.205 Sum_probs=210.1
Q ss_pred cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEe
Q 003813 37 LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116 (793)
Q Consensus 37 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 116 (793)
..+.++.++..++.+|.. -.+++++|+|++|+++.+++..|.++++|++|+|++|.+++..+.+|.++++|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-----IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcCccCCC-----CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 456788888888887653 236899999999999999888899999999999999999987788899999999999
Q ss_pred CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcc
Q 003813 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNL 196 (793)
Q Consensus 117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 196 (793)
|++|.+++..+..|..+++|++|++++|.+. .++...|.++++|++|++++|+.+....+..+..+++|+.|++++|.+
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 9999999877778889999999999999988 677666889999999999987645555555788888999999988888
Q ss_pred cccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccc
Q 003813 197 SQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGT 276 (793)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 276 (793)
++. | .+..+ ++|++|++++|.+.+..|..|..+++|++|++++|++++..+..|..+++|++|+|++|+++ .
T Consensus 209 ~~~-~-~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 280 (452)
T 3zyi_A 209 KDM-P-NLTPL-----VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S 280 (452)
T ss_dssp SSC-C-CCTTC-----TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-C
T ss_pred ccc-c-ccccc-----ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-c
Confidence 753 3 23333 78999999999998888888999999999999999998888888889999999999999987 4
Q ss_pred cChhhhhcCCCCcEEECCCCeeeeec
Q 003813 277 VSEIHFVNLTKLVTFRANGNSLIFKI 302 (793)
Q Consensus 277 ~~~~~~~~l~~L~~L~l~~n~l~~~~ 302 (793)
++...|..+++|+.|++++|++....
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSCEECST
T ss_pred cChHHhccccCCCEEEccCCCcCCCC
Confidence 55557888889999999999886543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=250.95 Aligned_cols=252 Identities=19% Similarity=0.223 Sum_probs=213.3
Q ss_pred cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEe
Q 003813 37 LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116 (793)
Q Consensus 37 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 116 (793)
..+.++.++..++.+|.. -.+++++|+|++|+++.+++..|.++++|++|+|++|.+++..+.+|.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-----ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-----CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcCcCCCC-----CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 456888888888887653 236889999999999999888899999999999999999987778899999999999
Q ss_pred CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcc
Q 003813 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNL 196 (793)
Q Consensus 117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 196 (793)
|++|++++..+..|..+++|++|++++|.+. .++...|.++++|++|++++|+.+....+..|.++++|+.|++++|.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 9999999877778999999999999999988 666666899999999999987645555556788899999999999988
Q ss_pred cccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEccCCCCccc
Q 003813 197 SQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLSKNELNGT 276 (793)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 276 (793)
+. +|. +..+ ++|++|++++|++.+..|..|..+++|++|++++|++++..+..|.++++|++|+|++|+++ .
T Consensus 198 ~~-~~~-~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 269 (440)
T 3zyj_A 198 RE-IPN-LTPL-----IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-L 269 (440)
T ss_dssp SS-CCC-CTTC-----SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-C
T ss_pred cc-ccc-cCCC-----cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-c
Confidence 74 332 3333 78999999999999888889999999999999999999888888999999999999999998 4
Q ss_pred cChhhhhcCCCCcEEECCCCeeeeec
Q 003813 277 VSEIHFVNLTKLVTFRANGNSLIFKI 302 (793)
Q Consensus 277 ~~~~~~~~l~~L~~L~l~~n~l~~~~ 302 (793)
++...|..+++|+.|++++|++....
T Consensus 270 ~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred cChhHhccccCCCEEEcCCCCccCCC
Confidence 55557888999999999999886543
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=4.2e-26 Score=233.17 Aligned_cols=211 Identities=19% Similarity=0.202 Sum_probs=156.1
Q ss_pred CCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEE
Q 003813 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILN 519 (793)
Q Consensus 440 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~ 519 (793)
++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+. .+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEE
Confidence 3566777777776665555666666777777777776666666666677777777777776643333333 567777777
Q ss_pred ccCccccccCCccccCCCCcCEEEcccCccccc-cCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchh
Q 003813 520 LRSNKFHGDFPIQLCRLASLQILDVAYNNLSGT-IPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLV 598 (793)
Q Consensus 520 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (793)
+++|++.+..+..+..+++|++|++++|++.+. +|..+.++++|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L----------------------------------- 151 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL----------------------------------- 151 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------------------------
Confidence 777777765555677777888888888877652 46666555444
Q ss_pred hhhhhccceeEEEcccCcceeeCccccccccCCc----eeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccccc
Q 003813 599 EYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQ----SLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS 674 (793)
Q Consensus 599 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 674 (793)
+.|++++|++++..+..+..+++|+ +|++++|++++..+..+. ..+|+.|++++|++++..+..|.
T Consensus 152 ---------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 152 ---------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp ---------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred ---------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhc
Confidence 6788888888877777787777777 899999999966665554 45899999999999988777889
Q ss_pred CCCCCCeEEcccCcccccCCCC
Q 003813 675 NLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 675 ~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
.+++|++|++++|+++|.||.-
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccccEEEccCCcccccCCch
Confidence 9999999999999999999854
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.4e-27 Score=244.57 Aligned_cols=220 Identities=18% Similarity=0.180 Sum_probs=166.7
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813 414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL 493 (793)
Q Consensus 414 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 493 (793)
.+++|+.|++++|.+++..|..|.++++|++|++++|++++..+ +..+++|++|++++|++++.. ..++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 35678888888888887777788888888888888888886554 778888888888888887543 33788888
Q ss_pred eCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCcccc-ccccCccccCCCCC
Q 003813 494 DMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCIN-NFSAMATTDSSDQS 572 (793)
Q Consensus 494 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~ 572 (793)
++++|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..|..+. .+
T Consensus 105 ~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l------------ 168 (317)
T 3o53_A 105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS------------ 168 (317)
T ss_dssp ECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT------------
T ss_pred ECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc------------
Confidence 8888888744332 357788888888888877777788888888888888888765554442 33
Q ss_pred CccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCc
Q 003813 573 NDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM 652 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 652 (793)
+.|+.|++++|++++. |. ...+++|++|+|++|++++ +|..+..+
T Consensus 169 --------------------------------~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 213 (317)
T 3o53_A 169 --------------------------------DTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSA 213 (317)
T ss_dssp --------------------------------TTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred --------------------------------CcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhccc
Confidence 3347788888888755 32 3347888888888888884 44457888
Q ss_pred CCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813 653 RSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE 692 (793)
Q Consensus 653 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 692 (793)
++|+.|++++|+++ .+|..+..+++|++|++++|+++|.
T Consensus 214 ~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 88888888888887 4677778888888888888888743
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.9e-28 Score=251.89 Aligned_cols=222 Identities=19% Similarity=0.207 Sum_probs=174.0
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
+++|+.|++++|.+++..+ +..+++|++|++++|++++.. ..++|++|++++|++++..+.. +++|++|+
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~ 126 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIY 126 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEE
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEE
Confidence 6778888888888876554 777888888888888887433 2378888888888888765443 56788888
Q ss_pred CCCCcccccCchhHHhhcccCcEEEccCccccccCCcccc-CCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813 495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLC-RLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN 573 (793)
Q Consensus 495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 573 (793)
+++|++++..|..+. .+++|++|++++|++++..+..+. .+++|++|++++|++++. |.. ..
T Consensus 127 l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~-------------- 189 (317)
T 3o53_A 127 LANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VV-------------- 189 (317)
T ss_dssp CCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CC--------------
T ss_pred CCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc-cc--------------
Confidence 888888754444444 678888888888888876666663 678899999999988743 211 11
Q ss_pred ccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcC
Q 003813 574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMR 653 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 653 (793)
++.|+.|++++|++++. |..+..+++|++|++++|+++ .+|..+..++
T Consensus 190 ------------------------------l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 190 ------------------------------FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp ------------------------------CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred ------------------------------cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 33458899999999854 555999999999999999999 6788899999
Q ss_pred CCCEEECCCCcCC-CCCcccccCCCCCCeEEcc-cCcccccCCC
Q 003813 654 SIESLDFSANQLS-GYIPQSMSNLSFLNYLNLS-NNNLNGEIPS 695 (793)
Q Consensus 654 ~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~ip~ 695 (793)
+|+.|++++|.++ +.+|..+..+++|+.++++ .+.++|..|.
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9999999999999 8889999999999999999 5567776654
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1e-27 Score=249.41 Aligned_cols=208 Identities=16% Similarity=0.199 Sum_probs=147.2
Q ss_pred cccEEEccCccCCCCCCcccccCCCCCeEEeecCccc-cccChhHH------hccccccEEEeeCccccccCCCCCCCCC
Q 003813 311 QLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRIS-AKIPRRFW------NSIFQYWFLNISGNQMYGGVPKFDSPSM 383 (793)
Q Consensus 311 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~-~~~~~~~~------~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 383 (793)
+|+.+++++|.+ .+|..+... ++.|++++|++. ..+|.... ..+++|++|++++|++++.+|
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------- 112 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP------- 112 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC-------
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH-------
Confidence 455555555555 445444333 666677776663 33444332 135566666666666555444
Q ss_pred CccCCCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCC-----CCCCEEEccCCcccccCCC
Q 003813 384 PLVTNLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNW-----PRLRMLNLRNNNFTGSLPM 458 (793)
Q Consensus 384 ~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~ 458 (793)
..+. +..+++|+.|++++|.+++. |..+..+ ++|++|++++|++++..|.
T Consensus 113 ----------------------~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 113 ----------------------PPLL--EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp ----------------------CCSS--SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred ----------------------HHHH--HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 2211 13478999999999999987 8877776 9999999999999988889
Q ss_pred CCCCCCCccEEEccCCccccc--cCccc--cCCCCCCEEeCCCCcccc--cCchhHHhhcccCcEEEccCccccccCC-c
Q 003813 459 SIGTLSSLMSLNLRNNRLSGI--IPTSF--NNFTILEALDMGENELVG--NIPTWMGERFSRLIILNLRSNKFHGDFP-I 531 (793)
Q Consensus 459 ~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~ 531 (793)
.|..+++|++|++++|++.+. .+..+ ..+++|++|++++|++++ .++..++..+++|++|++++|++++..| .
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 999999999999999998765 23334 889999999999999972 3444555567888888888888887664 3
Q ss_pred cccCCCCcCEEEcccCccccccCc
Q 003813 532 QLCRLASLQILDVAYNNLSGTIPR 555 (793)
Q Consensus 532 ~~~~l~~L~~L~Ls~N~l~~~~p~ 555 (793)
.+..+++|++|++++|+++ .+|.
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCS
T ss_pred hhhhcCCCCEEECCCCccC-hhhh
Confidence 4555677777777777776 4443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-26 Score=256.08 Aligned_cols=226 Identities=18% Similarity=0.165 Sum_probs=190.0
Q ss_pred hhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCC
Q 003813 408 ICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNF 487 (793)
Q Consensus 408 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 487 (793)
+......+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~ 98 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----G 98 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----C
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----C
Confidence 33333345689999999999998888899999999999999999987666 8899999999999999986543 3
Q ss_pred CCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCcccc-ccccCccc
Q 003813 488 TILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCIN-NFSAMATT 566 (793)
Q Consensus 488 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~ 566 (793)
++|+.|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .++.
T Consensus 99 ~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~---- 170 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT---- 170 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT----
T ss_pred CCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc----
Confidence 8999999999999854443 468899999999999988888899999999999999999987776654 4444
Q ss_pred cCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCC
Q 003813 567 DSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIP 646 (793)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 646 (793)
|+.|+|++|.+++..+ ...+++|+.|+|++|.+++. |
T Consensus 171 ----------------------------------------L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~ 207 (487)
T 3oja_A 171 ----------------------------------------LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-G 207 (487)
T ss_dssp ----------------------------------------CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-C
T ss_pred ----------------------------------------ccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-C
Confidence 4889999999997633 34689999999999999964 4
Q ss_pred ccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813 647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE 692 (793)
Q Consensus 647 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 692 (793)
..++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.|.
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 458999999999999999995 677899999999999999999843
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.6e-25 Score=246.56 Aligned_cols=203 Identities=25% Similarity=0.273 Sum_probs=132.4
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
+++|+.|++++|.+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|++++. |. .+++|+.|+
T Consensus 100 l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~ 167 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLW 167 (622)
T ss_dssp CTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred CCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEE
Confidence 45666677776666643 33 35667777777777663 4432 36677777777776643 32 245677777
Q ss_pred CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCc
Q 003813 495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSND 574 (793)
Q Consensus 495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 574 (793)
+++|.++ .+| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|..
T Consensus 168 L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~------------------ 219 (622)
T 3g06_A 168 AYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL------------------ 219 (622)
T ss_dssp CCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC------------------
T ss_pred CCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC------------------
Confidence 7777776 455 135677777777777764 4432 356777777777765 23321
Q ss_pred cccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCC
Q 003813 575 IFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRS 654 (793)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 654 (793)
++.|+.|++++|++++ +| ..+++|+.|+|++|+++ .+|. .+++
T Consensus 220 -----------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~ 262 (622)
T 3g06_A 220 -----------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSG 262 (622)
T ss_dssp -----------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred -----------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---cccc
Confidence 1234677777777774 55 34577778888888877 5665 4677
Q ss_pred CCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813 655 IESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS 695 (793)
Q Consensus 655 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 695 (793)
|+.|+|++|+++ .+|..+.++++|+.|++++|+++|.+|.
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 788888888887 6677777888888888888888777664
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.1e-25 Score=248.25 Aligned_cols=188 Identities=26% Similarity=0.358 Sum_probs=125.1
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 495 (793)
++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++
T Consensus 121 ~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~L 188 (622)
T 3g06_A 121 SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSV 188 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEEC
Confidence 445555555555553 3332 3566666666666663 332 23566666676666664 33 34566777777
Q ss_pred CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI 575 (793)
Q Consensus 496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 575 (793)
++|.++ .+|. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|. .
T Consensus 189 s~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~---~---------------- 239 (622)
T 3g06_A 189 SDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV---L---------------- 239 (622)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC---C----------------
T ss_pred CCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC---C----------------
Confidence 777766 3553 2456777777777776 34432 4677788888887764 441 1
Q ss_pred ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCC
Q 003813 576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI 655 (793)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 655 (793)
++.|+.|+|++|+|+ .+|. .+++|+.|+|++|+++ .+|..++++++|
T Consensus 240 ----------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 240 ----------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp ----------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred ----------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence 123477888888887 4555 5678899999999998 788889999999
Q ss_pred CEEECCCCcCCCCCcccccCCC
Q 003813 656 ESLDFSANQLSGYIPQSMSNLS 677 (793)
Q Consensus 656 ~~L~Ls~N~l~~~~p~~l~~l~ 677 (793)
+.|+|++|.+++.+|..+..++
T Consensus 287 ~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSCCCCHHHHHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHHHhcc
Confidence 9999999999988888777655
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-26 Score=254.06 Aligned_cols=243 Identities=20% Similarity=0.196 Sum_probs=198.3
Q ss_pred CCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccE
Q 003813 389 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMS 468 (793)
Q Consensus 389 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 468 (793)
.++.+++++|.+.+..|.. +..+++|+.|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCCCCGGG----GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred CccEEEeeCCcCCCCCHHH----HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 3445555555555544433 3448999999999999998766 8899999999999999986443 389999
Q ss_pred EEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCcccc-CCCCcCEEEcccC
Q 003813 469 LNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLC-RLASLQILDVAYN 547 (793)
Q Consensus 469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N 547 (793)
|++++|.+++..+. .+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..|..+. .+++|+.|+|++|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 99999999987664 458899999999999976676665 799999999999999998888876 7999999999999
Q ss_pred ccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccc
Q 003813 548 NLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN 627 (793)
Q Consensus 548 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 627 (793)
.+++..+. .. ++.|+.|+|++|.+++.+| .+..
T Consensus 180 ~l~~~~~~--~~--------------------------------------------l~~L~~L~Ls~N~l~~~~~-~~~~ 212 (487)
T 3oja_A 180 FIYDVKGQ--VV--------------------------------------------FAKLKTLDLSSNKLAFMGP-EFQS 212 (487)
T ss_dssp CCCEEECC--CC--------------------------------------------CTTCCEEECCSSCCCEECG-GGGG
T ss_pred cccccccc--cc--------------------------------------------CCCCCEEECCCCCCCCCCH-hHcC
Confidence 99865221 12 3446899999999997555 5999
Q ss_pred ccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCC-CCCcccccCCCCCCeEEcc-------cCcccccCC
Q 003813 628 LQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLS-GYIPQSMSNLSFLNYLNLS-------NNNLNGEIP 694 (793)
Q Consensus 628 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-------~N~l~g~ip 694 (793)
+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++ .|+..|.+|
T Consensus 213 l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 9999999999999995 7888999999999999999998 7788899999999999987 555555544
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5e-25 Score=224.04 Aligned_cols=207 Identities=19% Similarity=0.242 Sum_probs=135.0
Q ss_pred CccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCC
Q 003813 417 NIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG 496 (793)
Q Consensus 417 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 496 (793)
..+.++++++.++. +|..+. +++++|++++|++++..+..|..+++|++|++++|.++++.+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 34555555555552 343332 345555555555554444455555555555555555554444444445555555555
Q ss_pred CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813 497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF 576 (793)
Q Consensus 497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 576 (793)
+|++ ++..+..+..+++|++|++++|++++..|..+.++++|
T Consensus 94 ~n~l-------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------- 135 (270)
T 2o6q_A 94 DNKL-------------------------QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL------------- 135 (270)
T ss_dssp SSCC-------------------------CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcC-------------------------CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-------------
Confidence 5544 43333344555555555555555554444333333332
Q ss_pred cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCC
Q 003813 577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIE 656 (793)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 656 (793)
+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+
T Consensus 136 -------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 136 -------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp -------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -------------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 5566666666655555688899999999999999977777899999999
Q ss_pred EEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813 657 SLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS 695 (793)
Q Consensus 657 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 695 (793)
.|++++|++++..+..|..+++|++|++++|++.|.++.
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred EEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 999999999988778899999999999999999999874
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.3e-27 Score=273.47 Aligned_cols=310 Identities=16% Similarity=0.102 Sum_probs=153.0
Q ss_pred cCCCCcccEEEcCCccCCC-C---C-c-------h-hHhhCCCCCccEEEccCCCCCCCCCccCC-CCCCCCEEECcCc-
Q 003813 32 LSGLSLLKHLYISSVNLSK-A---S-D-------S-LLVINSLPSLKELKLSFCKLHHFPPLSSA-NFSSLTTLDLSEN- 96 (793)
Q Consensus 32 l~~l~~L~~L~L~~n~l~~-~---~-~-------~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n- 96 (793)
+..+++|++|+++++.... . + . + ......+++|++|++++|.++......+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4567778888887764211 1 0 0 0 11123567777777777776654433343 4677777777777
Q ss_pred cCCCc-ccccccCCCCCCEEeCcCCcCccCCccccc----CCCCCCEEEccCCccccccChhh----hcCCCCCcEEEcC
Q 003813 97 EFQGQ-IPSRLGNLTSLKYLDLSFNQFNSVVPGWLS----KLNDLEFLSLQSNRLQGNISSLG----LENLTSIQTLLLS 167 (793)
Q Consensus 97 ~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~i~~~~----~~~l~~L~~L~L~ 167 (793)
.++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. +.+.... ..++++|++|+++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecC
Confidence 44322 333344677777777777776654433332 55677777777775 1222221 2345777777777
Q ss_pred CCCCCCCCCcccccCCCCCcEEEccCCcc-------cccchhHHhhhccccCCCccEE-EccCcccccccccccCCCCCC
Q 003813 168 GNDELGGKIPTSFGRFCKLKSFSTGFTNL-------SQDISEILGIFSACVANELESL-DLGSCQIFGHMTNQLGRFKGL 239 (793)
Q Consensus 168 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l-------~~~~~~~~~~~~~~~~~~L~~L-~L~~n~~~~~~~~~l~~l~~L 239 (793)
+|..+.+ ++..+..+++|+.|+++.+.. .+ ++..+..+ ++|+.+ .+.+.. .+.++..+..+++|
T Consensus 220 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~-----~~L~~Ls~~~~~~-~~~l~~~~~~~~~L 291 (594)
T 2p1m_B 220 RAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGC-----KELRCLSGFWDAV-PAYLPAVYSVCSRL 291 (594)
T ss_dssp TTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTC-----TTCCEEECCBTCC-GGGGGGGHHHHTTC
T ss_pred CCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcC-----CCcccccCCcccc-hhhHHHHHHhhCCC
Confidence 7642323 555666666666666544321 11 22233333 555555 222221 12233333344555
Q ss_pred CEEeCcCCcCCCCcch-hhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEcc
Q 003813 240 NFLDLSNTTMDGSIPL-SLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVR 318 (793)
Q Consensus 240 ~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 318 (793)
++|++++|.+++.... .+..+++|++|++++| +...........+++|++|++.++.-.+ ...
T Consensus 292 ~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~ 355 (594)
T 2p1m_B 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------------MEP 355 (594)
T ss_dssp CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------------SSC
T ss_pred CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------------ccc
Confidence 5555555554432211 2335555555555555 2211111122234555555543221000 000
Q ss_pred CccCCCCCCcc-cccCCCCCeEEeecCccccccChhHHhccccccEEEee
Q 003813 319 SCRLGPRFPLW-LQSQKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNIS 367 (793)
Q Consensus 319 ~~~~~~~~~~~-l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls 367 (793)
.+.++...... ...+++|++|.+..+.+++.....+...+++|+.|+++
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 11111111111 12356677776666666655555555455666666666
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.1e-27 Score=271.72 Aligned_cols=158 Identities=13% Similarity=0.055 Sum_probs=86.5
Q ss_pred CCCCCEEeCCCCcccccCchhHHhhcccCcEEEcc--C----cccccc-----CCccccCCCCcCEEEcccCccccccCc
Q 003813 487 FTILEALDMGENELVGNIPTWMGERFSRLIILNLR--S----NKFHGD-----FPIQLCRLASLQILDVAYNNLSGTIPR 555 (793)
Q Consensus 487 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 555 (793)
+++|+.|+++.|.+++..+..+...+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 56666666666666655444454456666666666 2 333311 111244556666666655 44322221
Q ss_pred cccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccc-ccccCCcee
Q 003813 556 CINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEV-TNLQGLQSL 634 (793)
Q Consensus 556 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L 634 (793)
.+.. .++.|+.|+|++|.+++..+..+ ..+++|++|
T Consensus 450 ~l~~-------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 486 (594)
T 2p1m_B 450 YIGT-------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486 (594)
T ss_dssp HHHH-------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred HHHH-------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence 1111 13445677777777765444444 557777777
Q ss_pred eccCCcccccCCc-cccCcCCCCEEECCCCcCCCCCcccc-cCCCCCCeEEcccCc
Q 003813 635 NFSYNLFTGRIPD-NIGVMRSIESLDFSANQLSGYIPQSM-SNLSFLNYLNLSNNN 688 (793)
Q Consensus 635 ~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~ 688 (793)
+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 487 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 487 EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 7777777644433 33446777777777777753333333 345666555555443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.5e-24 Score=222.27 Aligned_cols=207 Identities=20% Similarity=0.256 Sum_probs=161.5
Q ss_pred ccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccC
Q 003813 436 WMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRL 515 (793)
Q Consensus 436 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L 515 (793)
+.++++++++++++|.++ .+|..+. ++++.|++++|.+++..+..|.++++|+.|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 455667777777777776 4554443 56777777777777776777777777777777777776 34433 257778
Q ss_pred cEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhcc
Q 003813 516 IILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKG 595 (793)
Q Consensus 516 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (793)
++|++++|+++ .+|..+..+++|++|++++|++++..|..|.++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 88888888887 667777788888888888888876655666655544
Q ss_pred chhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccC
Q 003813 596 FLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSN 675 (793)
Q Consensus 596 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 675 (793)
+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..
T Consensus 127 ------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 127 ------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp ------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred ------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 77888888888777777889999999999999999666667889999999999999998 77888888
Q ss_pred CCCCCeEEcccCcccccCC
Q 003813 676 LSFLNYLNLSNNNLNGEIP 694 (793)
Q Consensus 676 l~~L~~L~ls~N~l~g~ip 694 (793)
+++|+.+++++|++.|.|.
T Consensus 194 ~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TCCCSEEECCSCCBCCSGG
T ss_pred cccCCeEEeCCCCccCcCc
Confidence 8999999999999998874
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.3e-24 Score=220.29 Aligned_cols=213 Identities=19% Similarity=0.207 Sum_probs=184.7
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
.+++++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 36799999999999988888999999999999999999988888999999999999999999999889999999999999
Q ss_pred CCCCcccccCchhHHhhcccCcEEEccCcccccc-CCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813 495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGD-FPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN 573 (793)
Q Consensus 495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 573 (793)
+++|.+.+..+..+. .+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+..++.
T Consensus 107 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-------- 177 (276)
T 2z62_A 107 AVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL-------- 177 (276)
T ss_dssp CTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT--------
T ss_pred CCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc--------
Confidence 999999854443444 799999999999999864 6899999999999999999999777767766655532
Q ss_pred ccccccCCccchhhhhhhhhccchhhhhhhcccee-EEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCc
Q 003813 574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVR-GIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVM 652 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 652 (793)
+. .|++++|++++..+..+. ..+|++|++++|++++..+..|+.+
T Consensus 178 ---------------------------------l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 178 ---------------------------------LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp ---------------------------------CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred ---------------------------------cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccc
Confidence 22 799999999976665555 4589999999999997777778999
Q ss_pred CCCCEEECCCCcCCCCCc
Q 003813 653 RSIESLDFSANQLSGYIP 670 (793)
Q Consensus 653 ~~L~~L~Ls~N~l~~~~p 670 (793)
++|+.|++++|.+++..|
T Consensus 224 ~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSCCEEECCSSCBCCCTT
T ss_pred ccccEEEccCCcccccCC
Confidence 999999999999996543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.2e-23 Score=211.97 Aligned_cols=205 Identities=20% Similarity=0.247 Sum_probs=159.5
Q ss_pred CCCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCcc
Q 003813 388 NLGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLM 467 (793)
Q Consensus 388 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 467 (793)
...+.++++++.++. +|..+ .++++.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNI------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCCCEEEccCCCCCc-cCCCC------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 457899999999986 45332 36899999999999988888999999999999999999977777789999999
Q ss_pred EEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccC
Q 003813 468 SLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYN 547 (793)
Q Consensus 468 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 547 (793)
+|++++|++++..+..|.++++|++|++++|++++ ++...+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 99999999998888888888899999998888873 44333335667777777777666544444555666666666555
Q ss_pred ccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCcccccc
Q 003813 548 NLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTN 627 (793)
Q Consensus 548 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 627 (793)
+++ +..+..|.+
T Consensus 168 ~l~--------------------------------------------------------------------~~~~~~~~~ 179 (270)
T 2o6q_A 168 QLK--------------------------------------------------------------------RVPEGAFDK 179 (270)
T ss_dssp CCS--------------------------------------------------------------------CCCTTTTTT
T ss_pred cCc--------------------------------------------------------------------EeChhHhcc
Confidence 554 334445677
Q ss_pred ccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCC
Q 003813 628 LQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGY 668 (793)
Q Consensus 628 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 668 (793)
+++|++|++++|++++..+..|..+++|+.|++++|.+...
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 78888888888888866666788888888888888887654
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.1e-25 Score=242.06 Aligned_cols=243 Identities=14% Similarity=0.204 Sum_probs=193.6
Q ss_pred hhcccCCCCCccEEEccCCcccccC----CCCccCCCCCCEEEccCC---cccccCCCCC-------CCCCCccEEEccC
Q 003813 408 ICQGENFSKNIEFFQLSKNHFSGEI----PDCWMNWPRLRMLNLRNN---NFTGSLPMSI-------GTLSSLMSLNLRN 473 (793)
Q Consensus 408 ~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~-------~~l~~L~~L~L~~ 473 (793)
+...+..+++|+.|++++|.+++.. +..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3344445788999999999988763 345778999999999996 4455556554 6789999999999
Q ss_pred Ccccc----ccCccccCCCCCCEEeCCCCcccccCchhHHh---hc---------ccCcEEEccCcccc-ccCC---ccc
Q 003813 474 NRLSG----IIPTSFNNFTILEALDMGENELVGNIPTWMGE---RF---------SRLIILNLRSNKFH-GDFP---IQL 533 (793)
Q Consensus 474 n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~p---~~~ 533 (793)
|.+.+ .+|..+..+++|++|+|++|.+++..+..+.. .+ ++|++|++++|+++ +.+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99987 46778889999999999999987544444432 23 89999999999997 4444 467
Q ss_pred cCCCCcCEEEcccCcccc-----ccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhcccee
Q 003813 534 CRLASLQILDVAYNNLSG-----TIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVR 608 (793)
Q Consensus 534 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 608 (793)
..+++|++|++++|+++. ..|..+.. ++.|+
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--------------------------------------------~~~L~ 219 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--------------------------------------------CQELK 219 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--------------------------------------------CTTCC
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhc--------------------------------------------CCCcc
Confidence 788999999999999862 12223333 44568
Q ss_pred EEEcccCcce----eeCccccccccCCceeeccCCccccc----CCcccc--CcCCCCEEECCCCcCCC----CCcccc-
Q 003813 609 GIDISKNNFS----GEVPVEVTNLQGLQSLNFSYNLFTGR----IPDNIG--VMRSIESLDFSANQLSG----YIPQSM- 673 (793)
Q Consensus 609 ~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l- 673 (793)
.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|..+. .+++|+.|+|++|.+++ .+|..+
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 9999999996 67888999999999999999999976 567774 48999999999999998 488877
Q ss_pred cCCCCCCeEEcccCcccccCC
Q 003813 674 SNLSFLNYLNLSNNNLNGEIP 694 (793)
Q Consensus 674 ~~l~~L~~L~ls~N~l~g~ip 694 (793)
.++++|++|++++|++++..|
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTSH
T ss_pred hcCCCceEEEccCCcCCcchh
Confidence 678999999999999998765
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=7.1e-24 Score=215.70 Aligned_cols=203 Identities=19% Similarity=0.219 Sum_probs=137.8
Q ss_pred CCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcE
Q 003813 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLII 517 (793)
Q Consensus 438 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~ 517 (793)
.+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++ ++...+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCE
Confidence 44555556666555542 1 2355556666666666665542 245566666666666666653 33332235666666
Q ss_pred EEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccch
Q 003813 518 LNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFL 597 (793)
Q Consensus 518 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (793)
|++++|++++..+..+..+++|++|++++|++++..+..+.++++|
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L---------------------------------- 159 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL---------------------------------- 159 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC----------------------------------
Confidence 6666666665555556667777777777777765444444444433
Q ss_pred hhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCC
Q 003813 598 VEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLS 677 (793)
Q Consensus 598 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 677 (793)
+.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|+.|++++|.+.+. ++
T Consensus 160 ----------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~ 222 (272)
T 3rfs_A 160 ----------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CP 222 (272)
T ss_dssp ----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TT
T ss_pred ----------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------Cc
Confidence 6677777777766666778899999999999999988888889999999999999988865 44
Q ss_pred CCCeEEcccCcccccCCCC
Q 003813 678 FLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 678 ~L~~L~ls~N~l~g~ip~~ 696 (793)
.|++++++.|.++|.+|..
T Consensus 223 ~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHHHhCCCcccCc
Confidence 6889999999999999875
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.5e-23 Score=213.31 Aligned_cols=209 Identities=25% Similarity=0.309 Sum_probs=107.3
Q ss_pred CCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCC
Q 003813 33 SGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSL 112 (793)
Q Consensus 33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 112 (793)
..+++|+.|++++|.++.++. +..+++|++|++++|.+++++ .+..+++|++|++++|.+++..+..|.++++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccceeeeeeCCCCcccccc----cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 344455555555555444322 334455555555555554432 34455555555555555554444444555555
Q ss_pred CEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEcc
Q 003813 113 KYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG 192 (793)
Q Consensus 113 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~ 192 (793)
++|++++|++++..+..|+.+++|++|++++|.++ .++...++++++|++|++++|. +++..+..+..+++|+.|+++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECC
Confidence 55555555555444444455555555555555554 3333334455555555555554 444444444555555555555
Q ss_pred CCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCC
Q 003813 193 FTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIA 261 (793)
Q Consensus 193 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 261 (793)
.|.+++..+..+..+ ++|++|++++|.+.+ .+++|+.++++.|.++|.+|.+++.++
T Consensus 190 ~N~l~~~~~~~~~~l-----~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRL-----TSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SSCCSCCCTTTTTTC-----TTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCcCCccCHHHHhCC-----cCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 555554444444444 566666666665532 344566666777777776666665544
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.5e-25 Score=234.66 Aligned_cols=257 Identities=17% Similarity=0.205 Sum_probs=184.2
Q ss_pred EEcccCcccccccchhhcccCCCCCccEEEccCCcccccCC----CCccCCC-CCCEEEccCCcccccCCCCCCCC----
Q 003813 393 FDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIP----DCWMNWP-RLRMLNLRNNNFTGSLPMSIGTL---- 463 (793)
Q Consensus 393 l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l---- 463 (793)
++++.|.++|.+|..... .++|+.|++++|.+++..+ ..|.+++ +|++|+|++|++++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI----PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHTS----CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHhC----CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 456667777766654432 5668889999988887666 6777788 89999999998887766666654
Q ss_pred -CCccEEEccCCccccccCcc----ccCC-CCCCEEeCCCCcccccCchhHHhh----cccCcEEEccCccccccC----
Q 003813 464 -SSLMSLNLRNNRLSGIIPTS----FNNF-TILEALDMGENELVGNIPTWMGER----FSRLIILNLRSNKFHGDF---- 529 (793)
Q Consensus 464 -~~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~~~~---- 529 (793)
++|++|++++|++++..+.. +..+ ++|++|++++|++++..+..+... .++|++|+|++|++++..
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 88999999999888766654 3444 789999999998876555444322 358999999999888543
Q ss_pred CccccCCC-CcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhc-cce
Q 003813 530 PIQLCRLA-SLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSIL-NLV 607 (793)
Q Consensus 530 p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L 607 (793)
+..+..++ +|++|+|++|++++..+..+... .... +.|
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----------------------------------------l~~~~~~L 198 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKF----------------------------------------LASIPASV 198 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH----------------------------------------HHTSCTTC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHH----------------------------------------HHhCCCCC
Confidence 33445555 89999999998876555433221 1112 356
Q ss_pred eEEEcccCcceee----Cccccccc-cCCceeeccCCcccccCC----ccccCcCCCCEEECCCCcCCCCCc-------c
Q 003813 608 RGIDISKNNFSGE----VPVEVTNL-QGLQSLNFSYNLFTGRIP----DNIGVMRSIESLDFSANQLSGYIP-------Q 671 (793)
Q Consensus 608 ~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p-------~ 671 (793)
+.|||++|.+++. ++..+..+ ++|++|+|++|.+++..+ ..+..+++|+.|+|++|.+.+..+ .
T Consensus 199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~ 278 (362)
T 3goz_A 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence 8899999998853 45555553 589999999999986544 345667889999999998654443 3
Q ss_pred cccCCCCCCeEEcccCcccccC
Q 003813 672 SMSNLSFLNYLNLSNNNLNGEI 693 (793)
Q Consensus 672 ~l~~l~~L~~L~ls~N~l~g~i 693 (793)
.+..+++|+.||+++|++.+..
T Consensus 279 ~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 279 AFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp TSTTCCEEEEECTTSCBCCGGG
T ss_pred HhccCCceEEEecCCCcCCCcc
Confidence 5677888999999999987663
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.3e-23 Score=210.69 Aligned_cols=202 Identities=18% Similarity=0.175 Sum_probs=174.3
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813 414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL 493 (793)
Q Consensus 414 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 493 (793)
.+++++.+++++|.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 36789999999999984 555443 6899999999999988888899999999999999999976543 789999999
Q ss_pred eCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCC
Q 003813 494 DMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSN 573 (793)
Q Consensus 494 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 573 (793)
++++|+++ .+|..+. .+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++
T Consensus 83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------- 149 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK----------- 149 (290)
T ss_dssp ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-----------
T ss_pred ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-----------
Confidence 99999998 7887665 7899999999999999777788999999999999999998665555555444
Q ss_pred ccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcC
Q 003813 574 DIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMR 653 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 653 (793)
|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+.
T Consensus 150 ---------------------------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~ 195 (290)
T 1p9a_G 150 ---------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195 (290)
T ss_dssp ---------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ---------------------------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence 488999999999766667889999999999999999 8888899999
Q ss_pred CCCEEECCCCcCCC
Q 003813 654 SIESLDFSANQLSG 667 (793)
Q Consensus 654 ~L~~L~Ls~N~l~~ 667 (793)
+|+.|+|++|.+..
T Consensus 196 ~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 196 LLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSEEECCSCCBCC
T ss_pred cCCeEEeCCCCccC
Confidence 99999999999874
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.6e-23 Score=206.28 Aligned_cols=196 Identities=17% Similarity=0.228 Sum_probs=111.1
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCccEEEccCCc-cccccCccccCCCCCCEEeCCC-CcccccCchhHHhhcccCcEE
Q 003813 441 RLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR-LSGIIPTSFNNFTILEALDMGE-NELVGNIPTWMGERFSRLIIL 518 (793)
Q Consensus 441 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~~L~~L 518 (793)
+|++|++++|++++..+..|.++++|++|++++|+ ++++.+..|.++++|++|++++ |+++ .+|...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 55556666665555555455555566666666654 5555455555555666666655 5555 3333322345556666
Q ss_pred EccCccccccCCccccCCCCcC---EEEcccC-ccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhc
Q 003813 519 NLRSNKFHGDFPIQLCRLASLQ---ILDVAYN-NLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMK 594 (793)
Q Consensus 519 ~L~~n~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (793)
++++|++++ +|. +..+++|+ +|++++| ++++..+..+.+++.|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------- 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------- 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence 666665553 443 55555555 6666666 5554333344443333
Q ss_pred cchhhhhhhcccee-EEEcccCcceeeCccccccccCCceeeccCCc-ccccCCccccCc-CCCCEEECCCCcCCCCCcc
Q 003813 595 GFLVEYKSILNLVR-GIDISKNNFSGEVPVEVTNLQGLQSLNFSYNL-FTGRIPDNIGVM-RSIESLDFSANQLSGYIPQ 671 (793)
Q Consensus 595 ~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~ 671 (793)
+ .|++++|+++...+..+.. ++|++|++++|+ +++..+..|.++ ++|+.|++++|++++. |.
T Consensus 158 -------------~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~ 222 (239)
T 2xwt_C 158 -------------TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PS 222 (239)
T ss_dssp -------------EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CC
T ss_pred -------------eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Ch
Confidence 5 5666666666322333333 667777777774 765556667777 7777777777777643 33
Q ss_pred cccCCCCCCeEEcccC
Q 003813 672 SMSNLSFLNYLNLSNN 687 (793)
Q Consensus 672 ~l~~l~~L~~L~ls~N 687 (793)
. .+++|+.|+++++
T Consensus 223 ~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 223 K--GLEHLKELIARNT 236 (239)
T ss_dssp T--TCTTCSEEECTTC
T ss_pred h--HhccCceeeccCc
Confidence 2 4566777777665
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=218.56 Aligned_cols=209 Identities=19% Similarity=0.239 Sum_probs=129.6
Q ss_pred CCccEEEccCCcccccCCCCc--cCCCCCCEEEccCCcccccCC----CCCCCCCCccEEEccCCccccccCccccCCCC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCW--MNWPRLRMLNLRNNNFTGSLP----MSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI 489 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 489 (793)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..|.++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 456777777777766666666 666677777777777665433 22334666666666666666666666666666
Q ss_pred CCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCC
Q 003813 490 LEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSS 569 (793)
Q Consensus 490 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 569 (793)
|++|++++|++.+.... ..+..+..+++|++|++++|+++. +|.....
T Consensus 171 L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~---------- 218 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLALRNTGMET-PTGVCAA---------- 218 (310)
T ss_dssp CCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH----------
T ss_pred CCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH----------
Confidence 66666666665421000 001122345566666666666541 1211000
Q ss_pred CCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccc---cCCceeeccCCcccccCC
Q 003813 570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNL---QGLQSLNFSYNLFTGRIP 646 (793)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p 646 (793)
....++.|+.|||++|++++.+|..+..+ ++|++|+|++|+++ .+|
T Consensus 219 ------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 219 ------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp ------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred ------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence 00112334666777777766666666665 58888888888888 677
Q ss_pred ccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccc
Q 003813 647 DNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG 691 (793)
Q Consensus 647 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 691 (793)
..+. ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7765 7888888888888864 33 6778888889999888864
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=217.94 Aligned_cols=200 Identities=19% Similarity=0.217 Sum_probs=150.9
Q ss_pred CCccEEEccCCccccccCccc--cCCCCCCEEeCCCCcccccCc----hhHHhhcccCcEEEccCccccccCCccccCCC
Q 003813 464 SSLMSLNLRNNRLSGIIPTSF--NNFTILEALDMGENELVGNIP----TWMGERFSRLIILNLRSNKFHGDFPIQLCRLA 537 (793)
Q Consensus 464 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 537 (793)
++|++|++++|.+.+..|..+ ..+++|++|++++|++.+..+ ..+. .+++|++|++++|++.+..|..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCC
Confidence 456666666666666666665 666677777777776665444 2223 588999999999999988888999999
Q ss_pred CcCEEEcccCccccc--cC--ccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcc
Q 003813 538 SLQILDVAYNNLSGT--IP--RCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDIS 613 (793)
Q Consensus 538 ~L~~L~Ls~N~l~~~--~p--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 613 (793)
+|++|++++|++.+. ++ .++..+ +.|++|+|+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l--------------------------------------------~~L~~L~Ls 205 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKF--------------------------------------------PAIQNLALR 205 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSS--------------------------------------------CCCCSCBCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcC--------------------------------------------CCCCEEECC
Confidence 999999999998653 21 222333 345889999
Q ss_pred cCcceeeCcc----ccccccCCceeeccCCcccccCCccccCc---CCCCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813 614 KNNFSGEVPV----EVTNLQGLQSLNFSYNLFTGRIPDNIGVM---RSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN 686 (793)
Q Consensus 614 ~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 686 (793)
+|+++ .+|. .++.+++|++|||++|++++.+|+.++.+ ++|++|+|++|+++ .+|..+. ++|++||+++
T Consensus 206 ~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 206 NTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp SSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCS
T ss_pred CCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCC
Confidence 99997 3333 35788999999999999998889888887 69999999999999 6787764 8999999999
Q ss_pred CcccccCCCCCccCCcCCccccCCCcc
Q 003813 687 NNLNGEIPSSTQLQSFGGSSFADNDLC 713 (793)
Q Consensus 687 N~l~g~ip~~~~~~~~~~~~~~~n~l~ 713 (793)
|++++. |....+..+....+.+|.+.
T Consensus 282 N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 282 NRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CcCCCC-chhhhCCCccEEECcCCCCC
Confidence 999973 33334555666666777554
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=8.5e-23 Score=205.09 Aligned_cols=183 Identities=17% Similarity=0.208 Sum_probs=129.8
Q ss_pred CCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEE
Q 003813 440 PRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILN 519 (793)
Q Consensus 440 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~ 519 (793)
.+.++++++++.++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|.+++..|..+. .+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEE
Confidence 34667788888777 5565544 5777777777777777666677777777777777766633332222 455555555
Q ss_pred ccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhh
Q 003813 520 LRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVE 599 (793)
Q Consensus 520 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (793)
+++|++++..+..+..+++|+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~----------------------------------------------------------- 110 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLD----------------------------------------------------------- 110 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCC-----------------------------------------------------------
T ss_pred CCCCcccccChhHhcccCCCC-----------------------------------------------------------
Confidence 555555544444444444444
Q ss_pred hhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCC
Q 003813 600 YKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFL 679 (793)
Q Consensus 600 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 679 (793)
.|+|++|++++..+..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|++++..|..+..+++|
T Consensus 111 ---------~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 111 ---------KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp ---------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ---------EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 45555555554455567788899999999999997777789999999999999999998888889999999
Q ss_pred CeEEcccCcccccCC
Q 003813 680 NYLNLSNNNLNGEIP 694 (793)
Q Consensus 680 ~~L~ls~N~l~g~ip 694 (793)
++|++++|+++|.++
T Consensus 182 ~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 182 QTITLFGNQFDCSRC 196 (251)
T ss_dssp CEEECCSCCBCTTST
T ss_pred CEEEeeCCceeCCcc
Confidence 999999999998844
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.3e-23 Score=221.72 Aligned_cols=252 Identities=17% Similarity=0.212 Sum_probs=185.8
Q ss_pred CcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCccccc-CCCCCCCCCCccE
Q 003813 390 GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGS-LPMSIGTLSSLMS 468 (793)
Q Consensus 390 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 468 (793)
.+.++++++.+.......+. .+.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~-----~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLL-----SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHH-----HTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCCHHHHHhhh-----hccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 45666666665532111110 16788999999998877665 45688999999999988765 6777888899999
Q ss_pred EEccCCccccccCccccCCCCCCEEeCCCC-ccccc-CchhHHhhcccCcEEEccCc-ccccc-CCccccCCC-CcCEEE
Q 003813 469 LNLRNNRLSGIIPTSFNNFTILEALDMGEN-ELVGN-IPTWMGERFSRLIILNLRSN-KFHGD-FPIQLCRLA-SLQILD 543 (793)
Q Consensus 469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~ 543 (793)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 999999988888888888999999999999 67653 555444 7889999999999 88754 566677888 999999
Q ss_pred cccCc--cc-cccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc-cee
Q 003813 544 VAYNN--LS-GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN-FSG 619 (793)
Q Consensus 544 Ls~N~--l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~ 619 (793)
+++|. ++ +.+|..+.+ ++.|+.|++++|. +++
T Consensus 202 l~~~~~~~~~~~l~~~~~~--------------------------------------------~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRR--------------------------------------------CPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHH--------------------------------------------CTTCSEEECTTCTTCCG
T ss_pred eCCCcccCCHHHHHHHHhh--------------------------------------------CCCCCEEeCCCCCcCCH
Confidence 99984 43 233333333 4456889999998 777
Q ss_pred eCccccccccCCceeeccCCc-ccccCCccccCcCCCCEEECCCCcCCCCCcccccCC-CCCCeEEcccCcccccCCCC
Q 003813 620 EVPVEVTNLQGLQSLNFSYNL-FTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNL-SFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 620 ~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~ 696 (793)
..+..+..+++|++|++++|. ++......++++++|+.|++++| ++. ..+..+ ..+..|++++|++++..|..
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 778888999999999999995 33222236788999999999998 432 234444 24777788999999888764
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.9e-22 Score=199.75 Aligned_cols=199 Identities=16% Similarity=0.185 Sum_probs=172.2
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCc-ccccCCCCCCCCCCccEEEccC-CccccccCccccCCCCCCE
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNN-FTGSLPMSIGTLSSLMSLNLRN-NRLSGIIPTSFNNFTILEA 492 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~ 492 (793)
.++++.|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3589999999999998888899999999999999997 8877777899999999999999 9999888889999999999
Q ss_pred EeCCCCcccccCchhHHhhcccCc---EEEccCc-cccccCCccccCCCCcC-EEEcccCccccccCccccccccCcccc
Q 003813 493 LDMGENELVGNIPTWMGERFSRLI---ILNLRSN-KFHGDFPIQLCRLASLQ-ILDVAYNNLSGTIPRCINNFSAMATTD 567 (793)
Q Consensus 493 L~L~~N~l~~~~p~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~~~ 567 (793)
|++++|+++ .+|. + ..+++|+ +|++++| ++++..+..|..+++|+ .|++++|+++ .+|......
T Consensus 110 L~l~~n~l~-~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~------- 178 (239)
T 2xwt_C 110 LGIFNTGLK-MFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG------- 178 (239)
T ss_dssp EEEEEECCC-SCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-------
T ss_pred EeCCCCCCc-cccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-------
Confidence 999999998 4887 3 3688888 9999999 99977777899999999 9999999998 555432111
Q ss_pred CCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc-ceeeCccccccc-cCCceeeccCCcccccC
Q 003813 568 SSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN-FSGEVPVEVTNL-QGLQSLNFSYNLFTGRI 645 (793)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~ 645 (793)
+.|+.|++++|+ +++..+..|.++ ++|++|++++|+++ .+
T Consensus 179 -------------------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l 220 (239)
T 2xwt_C 179 -------------------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-AL 220 (239)
T ss_dssp -------------------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CC
T ss_pred -------------------------------------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cC
Confidence 346899999995 997778889999 99999999999999 55
Q ss_pred CccccCcCCCCEEECCCCc
Q 003813 646 PDNIGVMRSIESLDFSANQ 664 (793)
Q Consensus 646 p~~l~~l~~L~~L~Ls~N~ 664 (793)
|.. .+++|+.|+++++.
T Consensus 221 ~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 221 PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCT--TCTTCSEEECTTC-
T ss_pred Chh--HhccCceeeccCcc
Confidence 554 67899999999863
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=9.1e-24 Score=227.09 Aligned_cols=237 Identities=20% Similarity=0.267 Sum_probs=182.9
Q ss_pred CcEEEcccCcccccccchhhcccCCCCCccEEEccCC---cccccCCCCc-------cCCCCCCEEEccCCcccc----c
Q 003813 390 GSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKN---HFSGEIPDCW-------MNWPRLRMLNLRNNNFTG----S 455 (793)
Q Consensus 390 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n---~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~----~ 455 (793)
++.+++++|.+.+..+..++..+..+++|+.|+|++| ++++.+|..+ ..+++|++|+|++|.+++ .
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 113 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHH
T ss_pred ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHH
Confidence 4444455555555545555556667899999999986 4555555544 688999999999999986 4
Q ss_pred CCCCCCCCCCccEEEccCCccccccCcccc----CC---------CCCCEEeCCCCccc-ccCch--hHHhhcccCcEEE
Q 003813 456 LPMSIGTLSSLMSLNLRNNRLSGIIPTSFN----NF---------TILEALDMGENELV-GNIPT--WMGERFSRLIILN 519 (793)
Q Consensus 456 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~N~l~-~~~p~--~~~~~l~~L~~L~ 519 (793)
+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++ +.+|. ..+..+++|++|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 666788899999999999999755444443 34 89999999999997 44553 1223688999999
Q ss_pred ccCcccc--c---cCCccccCCCCcCEEEcccCccc----cccCccccccccCccccCCCCCCccccccCCccchhhhhh
Q 003813 520 LRSNKFH--G---DFPIQLCRLASLQILDVAYNNLS----GTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDAL 590 (793)
Q Consensus 520 L~~n~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (793)
+++|++. | ..|..+..+++|+.|+|++|.++ +.+|..+..++
T Consensus 194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~----------------------------- 244 (386)
T 2ca6_A 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP----------------------------- 244 (386)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-----------------------------
T ss_pred CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-----------------------------
Confidence 9999998 3 34447889999999999999996 44555554444
Q ss_pred hhhccchhhhhhhccceeEEEcccCcceee----Cccccc--cccCCceeeccCCcccc----cCCccc-cCcCCCCEEE
Q 003813 591 LVMKGFLVEYKSILNLVRGIDISKNNFSGE----VPVEVT--NLQGLQSLNFSYNLFTG----RIPDNI-GVMRSIESLD 659 (793)
Q Consensus 591 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ 659 (793)
.|+.|+|++|.+++. +|..+. .+++|++|+|++|.+++ .+|..+ .++++|+.|+
T Consensus 245 ---------------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 245 ---------------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp ---------------TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred ---------------CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 458999999999876 566664 48999999999999997 488887 6789999999
Q ss_pred CCCCcCCCCCc
Q 003813 660 FSANQLSGYIP 670 (793)
Q Consensus 660 Ls~N~l~~~~p 670 (793)
+++|++++..|
T Consensus 310 l~~N~l~~~~~ 320 (386)
T 2ca6_A 310 LNGNRFSEEDD 320 (386)
T ss_dssp CTTSBSCTTSH
T ss_pred ccCCcCCcchh
Confidence 99999998774
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.8e-22 Score=206.59 Aligned_cols=194 Identities=22% Similarity=0.391 Sum_probs=137.4
Q ss_pred cCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCc
Q 003813 437 MNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLI 516 (793)
Q Consensus 437 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~ 516 (793)
..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|+++ .++ .+. .+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCC
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCC
Confidence 345566677777766663 33 46666777777777777665443 666777777777777766 344 233 567777
Q ss_pred EEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccc
Q 003813 517 ILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGF 596 (793)
Q Consensus 517 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (793)
+|++++|++++ ++ .+..+++|+.|++++|++++..+ +..+
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l------------------------------------ 150 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGL------------------------------------ 150 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGC------------------------------------
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCC------------------------------------
Confidence 77777777774 33 36777788888888887764322 3333
Q ss_pred hhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCC
Q 003813 597 LVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNL 676 (793)
Q Consensus 597 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 676 (793)
+.|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +..+
T Consensus 151 --------~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l 216 (308)
T 1h6u_A 151 --------TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT 216 (308)
T ss_dssp --------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred --------CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence 334778888888875333 8888999999999999985443 8889999999999999986553 8889
Q ss_pred CCCCeEEcccCcccc
Q 003813 677 SFLNYLNLSNNNLNG 691 (793)
Q Consensus 677 ~~L~~L~ls~N~l~g 691 (793)
++|++|++++|++++
T Consensus 217 ~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 217 SNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCeeec
Confidence 999999999999976
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.7e-23 Score=218.17 Aligned_cols=212 Identities=15% Similarity=0.237 Sum_probs=158.2
Q ss_pred CCCccEEEccCCccccc-CCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCC-ccccc-cCccccCCCCCC
Q 003813 415 SKNIEFFQLSKNHFSGE-IPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNN-RLSGI-IPTSFNNFTILE 491 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~ 491 (793)
+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 57888888888888765 6777788888888888888888777777888888888888888 67653 566677888899
Q ss_pred EEeCCCC-ccccc-CchhHHhhcc-cCcEEEccCc--ccc-ccCCccccCCCCcCEEEcccCc-cccccCccccccccCc
Q 003813 492 ALDMGEN-ELVGN-IPTWMGERFS-RLIILNLRSN--KFH-GDFPIQLCRLASLQILDVAYNN-LSGTIPRCINNFSAMA 564 (793)
Q Consensus 492 ~L~L~~N-~l~~~-~p~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~ 564 (793)
+|++++| .+++. ++..+. .++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+.++++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~-- 248 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-- 248 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT--
T ss_pred EEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC--
Confidence 9999888 87754 455554 688 8999999888 444 4556667778889999999988 66555655555444
Q ss_pred cccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCc-ceeeCccccccccCCceeeccCCcccc
Q 003813 565 TTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNN-FSGEVPVEVTNLQGLQSLNFSYNLFTG 643 (793)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 643 (793)
|+.|++++|. ++......+.++++|++|++++| ++
T Consensus 249 ------------------------------------------L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~- 284 (336)
T 2ast_B 249 ------------------------------------------LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP- 284 (336)
T ss_dssp ------------------------------------------CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC-
T ss_pred ------------------------------------------CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC-
Confidence 4788888885 33222235788899999999988 33
Q ss_pred cCCccccCcC-CCCEEECCCCcCCCCCcccccC
Q 003813 644 RIPDNIGVMR-SIESLDFSANQLSGYIPQSMSN 675 (793)
Q Consensus 644 ~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~ 675 (793)
.+.+..+. .++.|++++|++++..|..++.
T Consensus 285 --~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 285 --DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp --TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred --HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 22444443 4777789999999998887664
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=2.8e-21 Score=194.02 Aligned_cols=181 Identities=19% Similarity=0.239 Sum_probs=152.4
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 495 (793)
...+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46789999999998 5666554 68999999999999988889999999999999999999999999999999999999
Q ss_pred CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI 575 (793)
Q Consensus 496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 575 (793)
++|+++ .+|...+..+++|++|+|++|++++..+..+..+++|+.|+|++|++++
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------ 145 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------------------------ 145 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc------------------------
Confidence 999998 5555555589999999999999997666667778888888887777763
Q ss_pred ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCC
Q 003813 576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSI 655 (793)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 655 (793)
..+..|+.+++|++|+|++|++++..|..|..+++|
T Consensus 146 --------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 146 --------------------------------------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp --------------------------------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred --------------------------------------------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 233356677788888888888887777788888888
Q ss_pred CEEECCCCcCCCC
Q 003813 656 ESLDFSANQLSGY 668 (793)
Q Consensus 656 ~~L~Ls~N~l~~~ 668 (793)
+.|++++|.+++.
T Consensus 182 ~~L~l~~N~~~c~ 194 (251)
T 3m19_A 182 QTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSCCBCTT
T ss_pred CEEEeeCCceeCC
Confidence 8888888888765
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=7.4e-21 Score=201.00 Aligned_cols=242 Identities=15% Similarity=0.155 Sum_probs=183.6
Q ss_pred cEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCC-CCCCCCCCccE-
Q 003813 391 SIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLP-MSIGTLSSLMS- 468 (793)
Q Consensus 391 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~- 468 (793)
+.++.++++++. +|..+ ++++++|+|++|+++.+.+++|.++++|++|+|++|++.+.+| .+|.+++++++
T Consensus 12 ~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 456666666663 34322 4689999999999998777899999999999999999876554 57888988775
Q ss_pred EEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccC-ccccccCCccccCCC-CcCEEEccc
Q 003813 469 LNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRS-NKFHGDFPIQLCRLA-SLQILDVAY 546 (793)
Q Consensus 469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~-~L~~L~Ls~ 546 (793)
+.+++|+++++.|..|.++++|++|++++|++. .+|...+....++..|++.+ +++....+..|..+. .++.|++++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 667789999998999999999999999999998 55554443566788899976 567655555666664 689999999
Q ss_pred CccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEccc-CcceeeCcccc
Q 003813 547 NNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISK-NNFSGEVPVEV 625 (793)
Q Consensus 547 N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~p~~~ 625 (793)
|+++. +|...... ..++.+++++ |.++...+..|
T Consensus 164 N~i~~-i~~~~f~~--------------------------------------------~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 164 NGIQE-IHNSAFNG--------------------------------------------TQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp SCCCE-ECTTSSTT--------------------------------------------EEEEEEECTTCTTCCCCCTTTT
T ss_pred ccccC-CChhhccc--------------------------------------------cchhHHhhccCCcccCCCHHHh
Confidence 99984 44332222 2358899985 55664444578
Q ss_pred ccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcc
Q 003813 626 TNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNL 689 (793)
Q Consensus 626 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 689 (793)
.++++|++|||++|+++ .+|.. .+.+|+.|...++.--..+|. +.++++|+.++++++.-
T Consensus 199 ~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 199 HGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSH 258 (350)
T ss_dssp TTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHH
T ss_pred ccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCcc
Confidence 99999999999999999 45542 345666777666555557774 88999999999987643
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=5.3e-22 Score=210.97 Aligned_cols=271 Identities=19% Similarity=0.146 Sum_probs=146.9
Q ss_pred EEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCccc----ccccCCC-CCCEEeCcCCcCccCCcccccCC-----CC
Q 003813 66 ELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIP----SRLGNLT-SLKYLDLSFNQFNSVVPGWLSKL-----ND 135 (793)
Q Consensus 66 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~ 135 (793)
++++++|.+++..+..+...++|++|||++|.+++..+ .++..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677777777666555555568888888887776555 6677777 78888888887777666666553 77
Q ss_pred CCEEEccCCccccccChh---hhcCC-CCCcEEEcCCCCCCCCCCcccc----cC-CCCCcEEEccCCcccccchhHHhh
Q 003813 136 LEFLSLQSNRLQGNISSL---GLENL-TSIQTLLLSGNDELGGKIPTSF----GR-FCKLKSFSTGFTNLSQDISEILGI 206 (793)
Q Consensus 136 L~~L~L~~n~l~~~i~~~---~~~~l-~~L~~L~L~~n~~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~~~~~ 206 (793)
|++|++++|.+++..+.. .+..+ ++|++|++++|. +++..+..+ .. .++|++|++++|.+++.....+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 888888888776333221 13334 677777777776 555544333 22 246666666666666433333222
Q ss_pred hccccCCCccEEEccCccccccccccc----CCC-CCCCEEeCcCCcCCCC----cchhhcC-CCCCCEEEccCCCCccc
Q 003813 207 FSACVANELESLDLGSCQIFGHMTNQL----GRF-KGLNFLDLSNTTMDGS----IPLSLGQ-IANLEYLDLSKNELNGT 276 (793)
Q Consensus 207 ~~~~~~~~L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~ 276 (793)
......++|++|++++|++++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|+|++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 111111256666666666655444322 233 3566666666665542 2333333 23566666666655432
Q ss_pred cCh---hhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeEEeecCccccccChh
Q 003813 277 VSE---IHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDLYISSTRISAKIPRR 353 (793)
Q Consensus 277 ~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 353 (793)
... ..+..+++|++|++++|.+....... ...++..+..+++|++|++++|++.+..+..
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~-----------------~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ-----------------CKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH-----------------HHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHH-----------------HHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 211 12233444444444444421110000 0011223445666777777777766554444
Q ss_pred H
Q 003813 354 F 354 (793)
Q Consensus 354 ~ 354 (793)
+
T Consensus 304 ~ 304 (362)
T 3goz_A 304 I 304 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.5e-20 Score=194.46 Aligned_cols=195 Identities=25% Similarity=0.337 Sum_probs=139.9
Q ss_pred cCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCC
Q 003813 32 LSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTS 111 (793)
Q Consensus 32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 111 (793)
...+++|++|++++|.++.++. +..+++|++|++++|.++++++ +..+++|++|++++|.+++. ..+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~----~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEG----VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccCchh----hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence 4456777777777777776542 4567777777777777777665 67777777777777777743 35777777
Q ss_pred CCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEc
Q 003813 112 LKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFST 191 (793)
Q Consensus 112 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l 191 (793)
|++|++++|.+++. + .+..+++|++|++++|.++ .++. ++.+++|++|++++|. +++. +. +..+++|+.|++
T Consensus 109 L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~-l~~~-~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 109 IKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQ-VSDL-TP-LANLSKLTTLKA 180 (308)
T ss_dssp CCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSC-CCCC-GG-GTTCTTCCEEEC
T ss_pred CCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCc-CCCC-hh-hcCCCCCCEEEC
Confidence 77777777777664 2 2677777777777777776 4443 6677777777777776 5443 22 777777777777
Q ss_pred cCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCC
Q 003813 192 GFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDG 251 (793)
Q Consensus 192 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 251 (793)
++|.+++..+ +..+ ++|++|++++|++.+..+ +..+++|++|++++|.+++
T Consensus 181 ~~n~l~~~~~--l~~l-----~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 181 DDNKISDISP--LASL-----PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CSSCCCCCGG--GGGC-----TTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCccCcChh--hcCC-----CCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7777765433 4444 889999999999876653 7889999999999999874
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=189.02 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=132.6
Q ss_pred CEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCC-ccccCCCCcCEEEcccCccccccCccccccccCccccCC
Q 003813 491 EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFP-IQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSS 569 (793)
Q Consensus 491 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 569 (793)
+.+++++|.++ .+|..+. ..+++|++++|++++..| ..|..+++|+.|++++|++++..+..+.+++.|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 35666666665 4555432 345667777777765543 346677777777777777776555555554444
Q ss_pred CCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccc
Q 003813 570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI 649 (793)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 649 (793)
+.|+|++|++++..|..|.++++|++|+|++|++++..|..|
T Consensus 84 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 125 (220)
T 2v70_A 84 --------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125 (220)
T ss_dssp --------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred --------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence 677888888887777789999999999999999999889999
Q ss_pred cCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCcc-ccCCCccCCC
Q 003813 650 GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSS-FADNDLCGAP 716 (793)
Q Consensus 650 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~-~~~n~l~~~~ 716 (793)
..+++|+.|+|++|++++..|..|..+++|++|++++|+++|.|+..+...++.... +.++..|+.|
T Consensus 126 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P 193 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKP 193 (220)
T ss_dssp TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEES
T ss_pred CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCC
Confidence 999999999999999999999999999999999999999999998654333332211 2344556544
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.9e-20 Score=207.55 Aligned_cols=189 Identities=28% Similarity=0.396 Sum_probs=135.4
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 495 (793)
.+++.|++++|.+++ +|..+ .++|++|+|++|+++ .+| ..+++|++|++++|++++ +|. +.+ +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 478888888888886 56544 367888888888888 566 346788888888888886 555 544 7888888
Q ss_pred CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcc
Q 003813 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDI 575 (793)
Q Consensus 496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 575 (793)
++|++++ +|. .+++|++|++++|++++ +|. .+++|+.|++++|++++ +|. +. +
T Consensus 128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~-------------- 180 (571)
T 3cvr_A 128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--E-------------- 180 (571)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--T--------------
T ss_pred CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--C--------------
Confidence 8888874 666 36788888888888875 554 46778888888888775 554 32 2
Q ss_pred ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCC-------ceeeccCCcccccCCcc
Q 003813 576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGL-------QSLNFSYNLFTGRIPDN 648 (793)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~ 648 (793)
.|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..
T Consensus 181 ------------------------------~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 181 ------------------------------SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp ------------------------------TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred ------------------------------CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence 2467777777777 5565 544 56 77777777777 57777
Q ss_pred ccCcCCCCEEECCCCcCCCCCcccccCCC
Q 003813 649 IGVMRSIESLDFSANQLSGYIPQSMSNLS 677 (793)
Q Consensus 649 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 677 (793)
+..+++|+.|+|++|.+++.+|..+..++
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 77777777777777777777777666543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.8e-20 Score=207.89 Aligned_cols=134 Identities=28% Similarity=0.376 Sum_probs=60.8
Q ss_pred CCcEEEcccCcccccccchhhcccCCCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccE
Q 003813 389 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMS 468 (793)
Q Consensus 389 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 468 (793)
.++.+++++|.+++ +|..+ +++|+.|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE
T ss_pred CccEEEeCCCCCCc-cCHhH------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE
Confidence 44455555555444 33211 134555555555554 233 223445555555555543 333 332 4555
Q ss_pred EEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCc
Q 003813 469 LNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNN 548 (793)
Q Consensus 469 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 548 (793)
|++++|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+
T Consensus 125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 125 LDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred EECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence 5555555544 222 34455555555555542 443 23445555555555543 333 33 445555555555
Q ss_pred cc
Q 003813 549 LS 550 (793)
Q Consensus 549 l~ 550 (793)
++
T Consensus 192 L~ 193 (571)
T 3cvr_A 192 LE 193 (571)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.1e-20 Score=180.60 Aligned_cols=128 Identities=22% Similarity=0.265 Sum_probs=69.8
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCc
Q 003813 420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499 (793)
Q Consensus 420 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 499 (793)
.++.+++.++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 44455555442 23222 2356666666666665544455556666666666666665555555556666666666666
Q ss_pred ccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccc
Q 003813 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG 551 (793)
Q Consensus 500 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 551 (793)
++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus 88 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 55 3333333345556666666665554444445555666666666665553
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.3e-20 Score=184.53 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=130.4
Q ss_pred CEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCC
Q 003813 491 EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSD 570 (793)
Q Consensus 491 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 570 (793)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|+.|+|++|++++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 45666777666 5665442 467788888888876666677888888888888888887767776665554
Q ss_pred CCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCcccc
Q 003813 571 QSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIG 650 (793)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 650 (793)
+.|+|++|++++..+..|.++++|++|+|++|++++..|..|.
T Consensus 83 -------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 83 -------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp -------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 7788888888866666788999999999999999998899999
Q ss_pred CcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813 651 VMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 651 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
.+++|+.|+|++|++++..+..|..+++|++|++++|++.|.|+..
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 9999999999999999988889999999999999999999988744
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=176.00 Aligned_cols=150 Identities=29% Similarity=0.302 Sum_probs=77.5
Q ss_pred cEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEE
Q 003813 13 QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD 92 (793)
Q Consensus 13 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 92 (793)
+.++.+++.++.++..+ .++|++|++++|++++++. ..+..+++|++|++++|+++.+++..|.++++|++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPN--GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCT--TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCCh--hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 34555555554444322 2355555555555555432 1234555555555555555555554455555555555
Q ss_pred CcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813 93 LSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170 (793)
Q Consensus 93 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 170 (793)
+++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCC
Confidence 5555555444444555555555555555555544444555555555555555555 3333334455555555555553
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.3e-19 Score=191.35 Aligned_cols=237 Identities=16% Similarity=0.096 Sum_probs=172.6
Q ss_pred cEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccC-ccccCCCCCCE-EeCC
Q 003813 419 EFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP-TSFNNFTILEA-LDMG 496 (793)
Q Consensus 419 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~ 496 (793)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.++++++. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888888 566655 3679999999999997767789999999999999999866554 67888888775 5667
Q ss_pred CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEccc-CccccccCccccccccCccccCCCCCCcc
Q 003813 497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAY-NNLSGTIPRCINNFSAMATTDSSDQSNDI 575 (793)
Q Consensus 497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 575 (793)
.|+++ .++...+..+++|++|++++|++.+..+..+.....+..+++.+ +++....+..+..+.
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-------------- 153 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------- 153 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence 78888 55554455789999999999999876666677777888888876 455433333333322
Q ss_pred ccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccC-CcccccCCccccCcCC
Q 003813 576 FYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSY-NLFTGRIPDNIGVMRS 654 (793)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~ 654 (793)
..++.|+|++|+|+. +|.......+|++|++++ |.++...++.|+++++
T Consensus 154 -----------------------------~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 154 -----------------------------FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp -----------------------------SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred -----------------------------hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence 235789999999995 555555667899999985 6677444467899999
Q ss_pred CCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCCCccCCcCCcc
Q 003813 655 IESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSS 706 (793)
Q Consensus 655 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~ 706 (793)
|+.||+++|+++...+..| ..|+.|.+.+++--..+|.-..+..+....
T Consensus 204 L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~ 252 (350)
T 4ay9_X 204 PVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEAS 252 (350)
T ss_dssp CSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEE
T ss_pred cchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCc
Confidence 9999999999996555444 456666666555455777654444444333
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=2.7e-19 Score=176.32 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=129.9
Q ss_pred CCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCC
Q 003813 490 LEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSS 569 (793)
Q Consensus 490 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 569 (793)
.+.++.+++.+. .+|..+ .++|++|+|++|++++..|..+..+++|+.|+|++|++.+..+..+.+++.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~------- 89 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ------- 89 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-------
Confidence 456777777765 666654 367888888888888777778888888888888888886444444555444
Q ss_pred CCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccc
Q 003813 570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI 649 (793)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 649 (793)
|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+
T Consensus 90 -------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 131 (229)
T 3e6j_A 90 -------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131 (229)
T ss_dssp -------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred -------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence 478888889888777777899999999999999999 889999
Q ss_pred cCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCC
Q 003813 650 GVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPS 695 (793)
Q Consensus 650 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 695 (793)
..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|+.
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 9999999999999999988888899999999999999999999873
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.2e-19 Score=190.36 Aligned_cols=180 Identities=23% Similarity=0.208 Sum_probs=116.8
Q ss_pred CEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCcccc-CCCCCCEEeCCCCcccccCchhHHhhcccCcEEEcc
Q 003813 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFN-NFTILEALDMGENELVGNIPTWMGERFSRLIILNLR 521 (793)
Q Consensus 443 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~ 521 (793)
+.+++++++++ .+|..+. +.++.|+|++|++++..+..|. ++++|+.|+|++|++++ ++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECC
Confidence 57888888887 4665543 4577888888888877766666 67777777777776663 332222245555555555
Q ss_pred CccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813 522 SNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK 601 (793)
Q Consensus 522 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (793)
+|++++..+..|..+++|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~------------------------------------------------------------- 115 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALE------------------------------------------------------------- 115 (361)
T ss_dssp SSCCCEECTTTTTTCTTCC-------------------------------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCC-------------------------------------------------------------
Confidence 5555544333444444444
Q ss_pred hhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccc---cCcCCCCEEECCCCcCCCCCcccccCCCC
Q 003813 602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI---GVMRSIESLDFSANQLSGYIPQSMSNLSF 678 (793)
Q Consensus 602 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 678 (793)
.|+|++|+|++..|..|.++++|+.|+|++|++++..+..| ..+++|+.|||++|++++..+..+..++.
T Consensus 116 -------~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 188 (361)
T 2xot_A 116 -------VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188 (361)
T ss_dssp -------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred -------EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence 45555555555556667777778888888888874433334 56788888888888888666677777776
Q ss_pred --CCeEEcccCcccccCC
Q 003813 679 --LNYLNLSNNNLNGEIP 694 (793)
Q Consensus 679 --L~~L~ls~N~l~g~ip 694 (793)
++.|++++|++.|.|.
T Consensus 189 ~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 189 WVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp HHHTTEECCSSCEECCHH
T ss_pred hhcceEEecCCCccCCcC
Confidence 4778888888887765
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=8.1e-19 Score=179.79 Aligned_cols=187 Identities=20% Similarity=0.301 Sum_probs=113.9
Q ss_pred EEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCc
Q 003813 420 FFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE 499 (793)
Q Consensus 420 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 499 (793)
.+.+..+.+++.. .+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|+.|++++|+
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 3345555554332 233466677777777777633 2 35666677777777776665433 5666666666666666
Q ss_pred ccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCcccccc
Q 003813 500 LVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYAS 579 (793)
Q Consensus 500 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~ 579 (793)
++ .+|. +. .+++|++|++++|++++. ..+..+++|
T Consensus 102 l~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L---------------------------------------- 136 (291)
T 1h6t_A 102 VK-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQL---------------------------------------- 136 (291)
T ss_dssp CC-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTC----------------------------------------
T ss_pred CC-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCC----------------------------------------
Confidence 55 2332 22 344444444444444431 233334444
Q ss_pred CCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEE
Q 003813 580 LGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLD 659 (793)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 659 (793)
+.|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|+
T Consensus 137 ----------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 137 ----------------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184 (291)
T ss_dssp ----------------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ----------------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence 4555555555533 456777788888888888875444 77888888888
Q ss_pred CCCCcCCCCCcccccCCCCCCeEEcccCcccc
Q 003813 660 FSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG 691 (793)
Q Consensus 660 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 691 (793)
+++|++++ +| .+..+++|+.|++++|++++
T Consensus 185 L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 185 LSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 88888875 34 37788888888888888775
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.1e-19 Score=181.99 Aligned_cols=126 Identities=23% Similarity=0.306 Sum_probs=107.6
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
+++|+.|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 67899999999999865 3 48889999999999999996554 89999999999999999864 3489999999999
Q ss_pred CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcccc
Q 003813 495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSG 551 (793)
Q Consensus 495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 551 (793)
+++|++++ ++ .+. .+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 119 L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 119 LEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 99999984 54 344 699999999999999964 567788888888888887764
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=169.85 Aligned_cols=156 Identities=14% Similarity=0.205 Sum_probs=98.5
Q ss_pred CEEEccCCcccccCCCCCCCCCCccEEEccCCccccccC-ccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEcc
Q 003813 443 RMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIP-TSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLR 521 (793)
Q Consensus 443 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~ 521 (793)
+.+++++|.++ .+|..+. ..+++|++++|++++..+ ..|..+++|+.|++++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------- 70 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence 46777777776 3555442 345666666666665533 33555555555555555554
Q ss_pred CccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813 522 SNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK 601 (793)
Q Consensus 522 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (793)
+..+..|..+++|++|+|++|++++..|..+.++++|
T Consensus 71 -----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------------- 107 (220)
T 2v70_A 71 -----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL-------------------------------------- 107 (220)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC--------------------------------------
T ss_pred -----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC--------------------------------------
Confidence 3333444555555555555555554444434333333
Q ss_pred hhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813 602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP 670 (793)
Q Consensus 602 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 670 (793)
++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|.+++..+
T Consensus 108 ------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 108 ------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 556666666666667777788888888888888887778888888888888888888876544
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=5.8e-19 Score=168.72 Aligned_cols=155 Identities=18% Similarity=0.247 Sum_probs=114.4
Q ss_pred cEEEccCccccccCCccccCCCCcCEEEcccCccccccCc-cccccccCccccCCCCCCccccccCCccchhhhhhhhhc
Q 003813 516 IILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPR-CINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMK 594 (793)
Q Consensus 516 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (793)
+++++++|.++ .+|..+.. +|++|++++|++++..+. .+.+++.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~-------------------------------- 55 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPH-------------------------------- 55 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTT--------------------------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCC--------------------------------
Confidence 55666666665 45554432 677777777777654443 2444443
Q ss_pred cchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCccccc
Q 003813 595 GFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMS 674 (793)
Q Consensus 595 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 674 (793)
|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+++++|+.|+|++|++++.+|..|.
T Consensus 56 ------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 56 ------------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp ------------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred ------------CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence 36788888888877788889999999999999999988888899999999999999999999999999
Q ss_pred CCCCCCeEEcccCcccccCCCCCccCCcCCccccCC-CccCCCC
Q 003813 675 NLSFLNYLNLSNNNLNGEIPSSTQLQSFGGSSFADN-DLCGAPL 717 (793)
Q Consensus 675 ~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~ 717 (793)
.+++|++|++++|+++|.+|..+...++....+.++ ..|+.|.
T Consensus 124 ~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 124 HLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp TCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred cCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 999999999999999999886543333333334444 4565543
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=7.7e-19 Score=197.15 Aligned_cols=124 Identities=23% Similarity=0.328 Sum_probs=53.0
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 495 (793)
+.|+.|++++|.+... + .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.+++. ..+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence 4444444444444422 1 24444444444444444443222 44444444444444444431 13444444444444
Q ss_pred CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc
Q 003813 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550 (793)
Q Consensus 496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 550 (793)
++|++. .++. +. .+++|+.|+|++|++++. ..+..+++|+.|+|++|++.
T Consensus 117 s~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 117 EHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp TTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred cCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 444444 2221 21 344444444444444432 23444444444444444443
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=2.5e-18 Score=182.23 Aligned_cols=180 Identities=22% Similarity=0.212 Sum_probs=144.1
Q ss_pred ccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCC-CCCCccEEEccCCccccccCccccCCCCCCEEeCC
Q 003813 418 IEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIG-TLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMG 496 (793)
Q Consensus 418 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 496 (793)
-+.++++++.++. +|..+. +.++.|+|++|++++..+..+. .+++|++|+|++|+|+++.+..|.++++|+.|+|+
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3689999999985 666553 4699999999999988888887 89999999999999999988999999999999999
Q ss_pred CCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccc
Q 003813 497 ENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIF 576 (793)
Q Consensus 497 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 576 (793)
+|+++ .++...+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+
T Consensus 97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~---------------- 159 (361)
T 2xot_A 97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG---------------- 159 (361)
T ss_dssp SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------------------
T ss_pred CCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc----------------
Confidence 99998 5665555589999999999999998888999999999999999999984322222111
Q ss_pred cccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccC--CceeeccCCccc
Q 003813 577 YASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQG--LQSLNFSYNLFT 642 (793)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~ 642 (793)
..++.|+.|||++|+|++..+..+..++. ++.|+|++|.+.
T Consensus 160 -------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 160 -------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ---------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 11334567777777777555556666665 367777777776
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.1e-17 Score=163.55 Aligned_cols=134 Identities=22% Similarity=0.276 Sum_probs=65.3
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 495 (793)
++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+++++.+..|.++++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34555555555555444445555555555555555555444555555555555555555555444444445555555555
Q ss_pred CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc
Q 003813 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550 (793)
Q Consensus 496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 550 (793)
++|++++..|..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 112 ~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555432232222 3445555555555554444444444445555555554443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.3e-17 Score=164.40 Aligned_cols=156 Identities=21% Similarity=0.290 Sum_probs=97.3
Q ss_pred CCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEcc
Q 003813 442 LRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLR 521 (793)
Q Consensus 442 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~ 521 (793)
-+.++.++++++ .+|..+. ++|++|++++|.+++..|..|.++++|+.|+|++|++. .+|...+..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 344555555555 3444332 55666666666666655666666666666666666664 4444333345555555555
Q ss_pred CccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhh
Q 003813 522 SNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYK 601 (793)
Q Consensus 522 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (793)
+|++++..+..+..+++|+.|++++|+++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------------------------------------------- 125 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT--------------------------------------------------- 125 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------------------------------------
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc---------------------------------------------------
Confidence 55555444444555666666666655554
Q ss_pred hhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCc
Q 003813 602 SILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIP 670 (793)
Q Consensus 602 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 670 (793)
.+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+..+
T Consensus 126 ------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 126 ------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 445566677788888888888886666778888888888888888876543
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.8e-20 Score=209.32 Aligned_cols=191 Identities=21% Similarity=0.211 Sum_probs=121.2
Q ss_pred CCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCc-------------cccccCccccCCCCCCEEe-CCCCccccc
Q 003813 438 NWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR-------------LSGIIPTSFNNFTILEALD-MGENELVGN 503 (793)
Q Consensus 438 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~N~l~~~ 503 (793)
.++.|+.|+|++|+++ .+|..++.+++|+.|++++|. ..+..|..+.++++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 4555666666666665 455556666666666665543 3444555555556666555 4444332
Q ss_pred CchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCcc
Q 003813 504 IPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDE 583 (793)
Q Consensus 504 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 583 (793)
.|..+.+++|.++.. |. ..|+.|++++|.+++ +|. +++++.|
T Consensus 424 ----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L-------------------- 465 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLV-------------------- 465 (567)
T ss_dssp ----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTC--------------------
T ss_pred ----------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccC--------------------
Confidence 222233344444422 11 247777777777764 454 5544443
Q ss_pred chhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCC
Q 003813 584 KIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSAN 663 (793)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 663 (793)
+.|+|++|+|+ .+|..++++++|+.|+|++|++++ +| .++.+++|+.|+|++|
T Consensus 466 ------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 466 ------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp ------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred ------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 67777777777 677777788888888888888874 66 6777888888888888
Q ss_pred cCCCCC-cccccCCCCCCeEEcccCcccccCCCC
Q 003813 664 QLSGYI-PQSMSNLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 664 ~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
++++.+ |..+..+++|+.|++++|++++.+|..
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 887776 777888888888888888887776643
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=5.9e-18 Score=162.69 Aligned_cols=152 Identities=14% Similarity=0.244 Sum_probs=93.5
Q ss_pred CCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccc
Q 003813 487 FTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATT 566 (793)
Q Consensus 487 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~ 566 (793)
+++|+.|++++|.++ .+| .+. .+++|++|++++|.+. . +..+..+++|++|++++|++++..|..+..+++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--- 114 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL--- 114 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence 344444444444444 333 222 3455555555555443 1 2245556666666666666665555554444333
Q ss_pred cCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCc-ccccC
Q 003813 567 DSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNL-FTGRI 645 (793)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~ 645 (793)
+.|++++|++++..|..+..+++|++|++++|+ ++ .+
T Consensus 115 -----------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~ 152 (197)
T 4ezg_A 115 -----------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DI 152 (197)
T ss_dssp -----------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CC
T ss_pred -----------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-cc
Confidence 566666666666667777788888888888887 55 55
Q ss_pred CccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccc
Q 003813 646 PDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNG 691 (793)
Q Consensus 646 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 691 (793)
| .++.+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 153 ~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 5 57888888888888888875 33 67788888888888888754
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.1e-18 Score=182.75 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=48.4
Q ss_pred CCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCC-EEEccCCCCccccChhhhhcCCCCcEE
Q 003813 213 NELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLE-YLDLSKNELNGTVSEIHFVNLTKLVTF 291 (793)
Q Consensus 213 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L 291 (793)
++|+.+++++|++....+.+|.++++|+++++.+| ++.+.+.+|.+|++|+ .+++.+ .++ .++..+|.+|++|+.+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence 44555555555554444445555555555555554 4434444455555555 555544 333 3444455555555555
Q ss_pred ECCCCeeeeecCCCCCCcccccEE
Q 003813 292 RANGNSLIFKINPNWVPPFQLTGL 315 (793)
Q Consensus 292 ~l~~n~l~~~~~~~~~~~~~L~~L 315 (793)
+++.|.+.......|..+++|+.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEE
T ss_pred EeCCCccCccchhhhcCCcchhhh
Confidence 555554444444444444444333
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=8.4e-18 Score=161.62 Aligned_cols=152 Identities=17% Similarity=0.286 Sum_probs=76.0
Q ss_pred CCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCC
Q 003813 34 GLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLK 113 (793)
Q Consensus 34 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 113 (793)
.+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..++.+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTT----GGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCccChHH----HhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34455555555555554431 344555555555555444432 345555555555555555544445555555555
Q ss_pred EEeCcCCcCccCCcccccCCCCCCEEEccCCc-cccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEcc
Q 003813 114 YLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNR-LQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTG 192 (793)
Q Consensus 114 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~ 192 (793)
+|++++|.+++..|..++.+++|++|++++|. +. .++. +..+++|++|++++|. +++ ++ .+..+++|+.|+++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~--l~~l~~L~~L~l~~n~-i~~-~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMP--LKTLPELKSLNIQFDG-VHD-YR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGG--GGGCSSCCEEECTTBC-CCC-CT-TGGGCSSCCEEEEC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHh--hcCCCCCCEEECCCCC-CcC-hH-HhccCCCCCEEEee
Confidence 55555555555444555555555555555554 33 4431 5555555555555554 332 11 45555555555555
Q ss_pred CCccc
Q 003813 193 FTNLS 197 (793)
Q Consensus 193 ~n~l~ 197 (793)
+|.+.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 55543
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.9e-18 Score=191.46 Aligned_cols=121 Identities=24% Similarity=0.327 Sum_probs=68.2
Q ss_pred cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEe
Q 003813 37 LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLD 116 (793)
Q Consensus 37 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 116 (793)
.+..+.+..+.+.++.. +..+++|++|++++|.+..++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+
T Consensus 22 ~l~~l~l~~~~i~~~~~----~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHTTCSCTTSEEC----HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHhccCCCcccccc----hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 34444555555544322 234555666666666666554 35566666666666666664333 56666666666
Q ss_pred CcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813 117 LSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGND 170 (793)
Q Consensus 117 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 170 (793)
|++|.+.+. | .+..+++|++|+|++|.+. .++. +..+++|+.|+|++|.
T Consensus 94 Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 94 LDENKIKDL-S-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNK 142 (605)
T ss_dssp CCSSCCCCC-T-TSTTCTTCCEEECTTSCCC-CCGG--GGGCTTCSEEECCSSC
T ss_pred CcCCCCCCC-h-hhccCCCCCEEEecCCCCC-CCcc--ccCCCccCEEECCCCc
Confidence 666666552 2 4566666666666666665 3332 5566666666666665
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=6.8e-18 Score=169.99 Aligned_cols=168 Identities=19% Similarity=0.324 Sum_probs=108.0
Q ss_pred CccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEc
Q 003813 465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDV 544 (793)
Q Consensus 465 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 544 (793)
+++.+++++|.+++.. .+..+++|+.|++++|.++ .+| .+. .+++|++|++++|++++..+ +..+++|+.|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3444445555544332 3444555555555555554 344 222 45566666666666553322 566666666666
Q ss_pred ccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccc
Q 003813 545 AYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVE 624 (793)
Q Consensus 545 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 624 (793)
++|++++ +|.... +.|+.|++++|++++ ++ .
T Consensus 93 ~~N~l~~-l~~~~~----------------------------------------------~~L~~L~L~~N~l~~-~~-~ 123 (263)
T 1xeu_A 93 NRNRLKN-LNGIPS----------------------------------------------ACLSRLFLDNNELRD-TD-S 123 (263)
T ss_dssp CSSCCSC-CTTCCC----------------------------------------------SSCCEEECCSSCCSB-SG-G
T ss_pred CCCccCC-cCcccc----------------------------------------------CcccEEEccCCccCC-Ch-h
Confidence 6666653 221100 234667777777764 33 5
Q ss_pred cccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCccccc
Q 003813 625 VTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGE 692 (793)
Q Consensus 625 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 692 (793)
+..+++|++|++++|++++ +| .++.+++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 7888889999999999885 44 688889999999999999876 6688889999999999998876
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=3.7e-18 Score=171.90 Aligned_cols=123 Identities=25% Similarity=0.342 Sum_probs=78.1
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeC
Q 003813 416 KNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDM 495 (793)
Q Consensus 416 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 495 (793)
.++..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +.++++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 44666677777776443 46667777777777777773 34 56677777777777777775544 667777777777
Q ss_pred CCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccc
Q 003813 496 GENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLS 550 (793)
Q Consensus 496 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 550 (793)
++|+++ .+|... . ++|++|++++|++++. + .+..+++|+.|++++|+++
T Consensus 93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC
T ss_pred CCCccC-CcCccc--c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC
Confidence 777776 344322 1 5666666666666642 2 3555666666666666554
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.1e-18 Score=198.83 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=74.0
Q ss_pred CCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCccccC
Q 003813 456 LPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCR 535 (793)
Q Consensus 456 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 535 (793)
.+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+. .+++|++|+|++|+++ .+|..++.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3444555555555555555555 33333445555555555555555 5555443 4555555555555555 44555555
Q ss_pred CCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccC
Q 003813 536 LASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKN 615 (793)
Q Consensus 536 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 615 (793)
+++|++|+|++|.++ .+|..|+++++| +.|+|++|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L--------------------------------------------~~L~L~~N 326 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNL--------------------------------------------QFLGVEGN 326 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTC--------------------------------------------CCEECTTS
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCc--------------------------------------------cEEeCCCC
Confidence 555555555555554 445444444333 44555555
Q ss_pred cceeeCccccccccC-CceeeccCCcccccCCccccCcCCCCEEECCCC--------cCCCCCcccccCCCCCCeEEccc
Q 003813 616 NFSGEVPVEVTNLQG-LQSLNFSYNLFTGRIPDNIGVMRSIESLDFSAN--------QLSGYIPQSMSNLSFLNYLNLSN 686 (793)
Q Consensus 616 ~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~ 686 (793)
.|++.+|..+..+.. +..|+|++|.++|.+|.. |+.|++++| .+.+..+..+..+..+....+++
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 555555555543321 123556666666555543 334444444 33344444445555566666666
Q ss_pred Ccccc
Q 003813 687 NNLNG 691 (793)
Q Consensus 687 N~l~g 691 (793)
|-+.+
T Consensus 401 Nil~~ 405 (727)
T 4b8c_D 401 NTLCQ 405 (727)
T ss_dssp -CCCG
T ss_pred ccccc
Confidence 66653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=3.5e-19 Score=198.87 Aligned_cols=106 Identities=23% Similarity=0.310 Sum_probs=93.6
Q ss_pred ceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcc
Q 003813 606 LVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLS 685 (793)
Q Consensus 606 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 685 (793)
.|+.|+|++|++++ +|. ++.+++|+.|+|++|+++ .+|..|+.+++|+.|+|++|++++ +| .+..+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 36899999999996 676 999999999999999999 899999999999999999999997 67 89999999999999
Q ss_pred cCcccccC-CCC-CccCCcCCccccCCCccCCC
Q 003813 686 NNNLNGEI-PSS-TQLQSFGGSSFADNDLCGAP 716 (793)
Q Consensus 686 ~N~l~g~i-p~~-~~~~~~~~~~~~~n~l~~~~ 716 (793)
+|++++.+ |.. ..+..+....+.+|.+++.|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 99999986 654 45566677778888777654
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=4e-17 Score=170.75 Aligned_cols=286 Identities=12% Similarity=0.095 Sum_probs=173.6
Q ss_pred CCCCCeEEeecCccccccChhHHhccccccEEEeeCcccc--ccCCCCCCCCCCccCCCCcEEEcccCcccccccchhhc
Q 003813 333 QKKLNDLYISSTRISAKIPRRFWNSIFQYWFLNISGNQMY--GGVPKFDSPSMPLVTNLGSIFDLSNNALSGSIFHLICQ 410 (793)
Q Consensus 333 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~ 410 (793)
..++++|.++++ +...--..+...+++|+.|||++|++. ...+.. ........+..|.+.. .
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~--------~~~~~~~~~~~~~I~~-------~ 87 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT--------YPNGKFYIYMANFVPA-------Y 87 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS--------SGGGCCEEECTTEECT-------T
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc--------ccccccccccccccCH-------H
Confidence 456777777754 211111122222667888888888776 111110 0012223333332211 1
Q ss_pred ccCC--------CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCc----ccc
Q 003813 411 GENF--------SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNR----LSG 478 (793)
Q Consensus 411 ~~~~--------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~ 478 (793)
.+.. +++|+.+++.+ .++.+.+.+|.+|++|+.+++++|.++.+.+.+|.++.++..+....+. ...
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred HhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc
Confidence 2223 67777788777 7776777777778888888888777776777777777777766665532 223
Q ss_pred ccCccccCCCCCC-EEeCCCCcccccCchhHHhh---cccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccC
Q 003813 479 IIPTSFNNFTILE-ALDMGENELVGNIPTWMGER---FSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIP 554 (793)
Q Consensus 479 ~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~~---l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 554 (793)
....+|.++..|+ .+.+.... .++..++.. ..++..+.+.++-...........+++|+.+++++|+++..-+
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 3445566677776 55554432 344444322 3456666665542221111111236788888888887774444
Q ss_pred ccccccccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCc-e
Q 003813 555 RCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQ-S 633 (793)
Q Consensus 555 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~ 633 (793)
.+|.++++| +.+++++| ++...+.+|.++++|+ .
T Consensus 244 ~aF~~~~~L--------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 244 FTFAQKKYL--------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp TTTTTCTTC--------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred hhhhCCCCC--------------------------------------------CEEECCcc-cceehHHHhhCChhccEE
Confidence 556665554 67777776 6666667788888888 8
Q ss_pred eeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEc
Q 003813 634 LNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNL 684 (793)
Q Consensus 634 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 684 (793)
+++++ .++...+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88887 677566778888888888888888888777778888888887763
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=2.8e-18 Score=197.87 Aligned_cols=191 Identities=19% Similarity=0.183 Sum_probs=124.9
Q ss_pred EEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcc
Q 003813 421 FQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENEL 500 (793)
Q Consensus 421 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 500 (793)
+++..|.+. ..++.|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|+|
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 344445554 56788999999999999999998 67777779999999999999999 7889999999999999999999
Q ss_pred cccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccC
Q 003813 501 VGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASL 580 (793)
Q Consensus 501 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~ 580 (793)
+ .+|..+. .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+...
T Consensus 283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~----------------- 342 (727)
T 4b8c_D 283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT----------------- 342 (727)
T ss_dssp S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH-----------------
T ss_pred C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh-----------------
Confidence 9 8999887 7999999999999998 788889999999999999999999888776543221
Q ss_pred CccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCC--------cccccCCccccCc
Q 003813 581 GDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYN--------LFTGRIPDNIGVM 652 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l 652 (793)
...++|++|.+++.+|.. |+.|++++| .+.+..+..+..+
T Consensus 343 --------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l 390 (727)
T 4b8c_D 343 --------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDL 390 (727)
T ss_dssp --------------------------HHHHHHHHCCCCCCCCCC------------------------------------
T ss_pred --------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcc
Confidence 123678999999888865 456677777 5555566667778
Q ss_pred CCCCEEECCCCcCC
Q 003813 653 RSIESLDFSANQLS 666 (793)
Q Consensus 653 ~~L~~L~Ls~N~l~ 666 (793)
..++...+++|.+.
T Consensus 391 ~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 391 AKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------CCC
T ss_pred cccceeeeeccccc
Confidence 88888899999876
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=157.05 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=106.5
Q ss_pred cEEEccCccccccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhhhhhcc
Q 003813 516 IILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKG 595 (793)
Q Consensus 516 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (793)
+++++++|.++ .+|..+. ++|+.|++++|+++ .+|..+.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------------------- 56 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL-------------------------------- 56 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence 45666666666 4554432 46777777777776 555555444443
Q ss_pred chhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccC
Q 003813 596 FLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSN 675 (793)
Q Consensus 596 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 675 (793)
+.|+|++|+|++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..
T Consensus 57 ------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (193)
T 2wfh_A 57 ------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124 (193)
T ss_dssp ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred ------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence 67788888887777778999999999999999999888889999999999999999999877778999
Q ss_pred CCCCCeEEcccCcccccCCCCC
Q 003813 676 LSFLNYLNLSNNNLNGEIPSST 697 (793)
Q Consensus 676 l~~L~~L~ls~N~l~g~ip~~~ 697 (793)
+++|++|++++|++.|.|+..+
T Consensus 125 l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 125 LSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp CTTCCEEECCSSCEECSGGGHH
T ss_pred CccccEEEeCCCCeecCCcCHH
Confidence 9999999999999999887543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=5.6e-17 Score=154.91 Aligned_cols=156 Identities=20% Similarity=0.254 Sum_probs=111.8
Q ss_pred CEEeCCCCcccccCchhHHhhcccCcEEEccCccccccCCc-cccCCCCcCEEEcccCccccccCccccccccCccccCC
Q 003813 491 EALDMGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPI-QLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSS 569 (793)
Q Consensus 491 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 569 (793)
+.+++++|.++ .+|..+. .++++|++++|++++..+. .+..+++|++|+|++|++++..|..+.+++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 56666666664 6665443 2677777777777755543 36777788888888888877667666665544
Q ss_pred CCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccc
Q 003813 570 DQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNI 649 (793)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 649 (793)
+.|+|++|++++..|..|.++++|++|+|++|++++.+|..|
T Consensus 81 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 81 --------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp --------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred --------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 678888888888888888899999999999999999889999
Q ss_pred cCcCCCCEEECCCCcCCCCCccc-ccCCCCCCeEEcccCcccccCCCC
Q 003813 650 GVMRSIESLDFSANQLSGYIPQS-MSNLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 650 ~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
+.+++|+.|+|++|.+++..+.. +. ..++...+..+...|.-|..
T Consensus 123 ~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 123 EHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp TTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT
T ss_pred hcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChH
Confidence 99999999999999998766521 11 11222344455556655543
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=6.3e-16 Score=145.72 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=76.1
Q ss_pred eEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccC
Q 003813 608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNN 687 (793)
Q Consensus 608 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 687 (793)
+.|++++|++++..+..+..+++|++|++++|++++..+..++.+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 66777777777556666788999999999999999877778899999999999999999777777889999999999999
Q ss_pred cccccCCC
Q 003813 688 NLNGEIPS 695 (793)
Q Consensus 688 ~l~g~ip~ 695 (793)
+++|.+|.
T Consensus 135 ~~~~~~~~ 142 (177)
T 2o6r_A 135 PWDCSCPR 142 (177)
T ss_dssp CBCCCHHH
T ss_pred CeeccCcc
Confidence 99998873
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=7.8e-15 Score=157.46 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=51.1
Q ss_pred CCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEeCCCCcccccCchhHHhhcc
Q 003813 434 DCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENELVGNIPTWMGERFS 513 (793)
Q Consensus 434 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~ 513 (793)
.+|..+.+|+.+.+.++ ++.+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+++..+ ++ .++...|.+|+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~ 366 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI 366 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC
Confidence 34555555555555443 44344455555555555555432 44444555555566665555544 33 44444444555
Q ss_pred cCcEEEccCccccccCCccccCCCCcCE
Q 003813 514 RLIILNLRSNKFHGDFPIQLCRLASLQI 541 (793)
Q Consensus 514 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 541 (793)
+|+.+++..+ +. .+..+|.++++|+.
T Consensus 367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 367 NLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred CCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 5555555433 11 12334555555544
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5.3e-16 Score=144.90 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=60.2
Q ss_pred eEEEcccCcceeeCccccccccCCceeeccCCcccccC-CccccCcCCCCEEECCCCcCCCCCc---ccccCCCCCCeEE
Q 003813 608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRI-PDNIGVMRSIESLDFSANQLSGYIP---QSMSNLSFLNYLN 683 (793)
Q Consensus 608 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ 683 (793)
+.|++++|++++.+|..+..+++|++|++++|++++.. +..++.+++|+.|++++|.+++..+ ..+..+++|++||
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 55666666666556666667778888888888887432 2677788888888888888886555 4778888888888
Q ss_pred cccCccc
Q 003813 684 LSNNNLN 690 (793)
Q Consensus 684 ls~N~l~ 690 (793)
+++|.+.
T Consensus 154 l~~n~~~ 160 (168)
T 2ell_A 154 GYDREDQ 160 (168)
T ss_dssp TEETTSC
T ss_pred CCCCChh
Confidence 8888775
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=3.3e-16 Score=143.05 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=98.7
Q ss_pred cccCcEEEccCcccc-ccCCccccCCCCcCEEEcccCccccccCccccccccCccccCCCCCCccccccCCccchhhhhh
Q 003813 512 FSRLIILNLRSNKFH-GDFPIQLCRLASLQILDVAYNNLSGTIPRCINNFSAMATTDSSDQSNDIFYASLGDEKIVEDAL 590 (793)
Q Consensus 512 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (793)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+.+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~----------------------------- 64 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN----------------------------- 64 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-----------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-----------------------------
Confidence 356777777777777 66777777788888888888877644 3333333
Q ss_pred hhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCccccc-CCccccCcCCCCEEECCCCcCCCCC
Q 003813 591 LVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGR-IPDNIGVMRSIESLDFSANQLSGYI 669 (793)
Q Consensus 591 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~ 669 (793)
.|+.|++++|.+++.+|..+..+++|++|++++|++++. .|..++.+++|+.|++++|++++..
T Consensus 65 ---------------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 65 ---------------KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ---------------TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred ---------------CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 347788888888877787788888899999999998853 3477888899999999999988776
Q ss_pred c---ccccCCCCCCeEEccc
Q 003813 670 P---QSMSNLSFLNYLNLSN 686 (793)
Q Consensus 670 p---~~l~~l~~L~~L~ls~ 686 (793)
+ ..+..+++|++||+++
T Consensus 130 ~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 130 DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHHHCCCcccccCCC
Confidence 6 5788889999988864
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=8.2e-16 Score=143.58 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=117.6
Q ss_pred CCCccEEEccCCccc-ccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813 415 SKNIEFFQLSKNHFS-GEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL 493 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 493 (793)
+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 578999999999998 67888889999999999999999865 778899999999999999998788888889999999
Q ss_pred eCCCCcccccCc--hhHHhhcccCcEEEccCccccccCC---ccccCCCCcCEEEcccCccccccCc
Q 003813 494 DMGENELVGNIP--TWMGERFSRLIILNLRSNKFHGDFP---IQLCRLASLQILDVAYNNLSGTIPR 555 (793)
Q Consensus 494 ~L~~N~l~~~~p--~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~ 555 (793)
++++|+++ .+| ..+. .+++|++|++++|++++..+ ..+..+++|+.|++++|.+. .+|.
T Consensus 101 ~Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999998 444 4444 78999999999999996655 47889999999999999886 4443
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1.2e-14 Score=154.96 Aligned_cols=265 Identities=12% Similarity=0.105 Sum_probs=156.6
Q ss_pred CCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCE
Q 003813 35 LSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKY 114 (793)
Q Consensus 35 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 114 (793)
+..++.+.+.+ .++.++.. +|.++ +|+.+.+..+ ++.+...+|.++ +|+.+++.. .+..+.+.+|.+|++|+.
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~--aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKD--AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCCEECTT--TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccCEehHh--hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34555555543 23333222 23333 4555555544 555555555553 455665554 444344455555666666
Q ss_pred EeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCC
Q 003813 115 LDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFT 194 (793)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n 194 (793)
+++++|+++.+...+|. ..+|+.+.+..+ +. .++..+|.++++|+.+++..+ +......+|.+ ++|+.+.+. +
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~ 257 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-N 257 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-T
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-C
Confidence 66655555554444454 355666665533 33 455555556666666665554 33333444444 455555552 2
Q ss_pred cccccchhHHhhhccccCCCccEEEccCcccc-----cccccccCCCCCCCEEeCcCCcCCCCcchhhcCCCCCCEEEcc
Q 003813 195 NLSQDISEILGIFSACVANELESLDLGSCQIF-----GHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQIANLEYLDLS 269 (793)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 269 (793)
.++..-...+..+ ++|+.+++.++.+. ...+.+|..|++|+.+++.+ .++.+...+|.+|++|+.+++.
T Consensus 258 ~i~~I~~~aF~~c-----~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 258 GVTNIASRAFYYC-----PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TCCEECTTTTTTC-----TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred CccEEChhHhhCC-----CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 2222222233333 56666666665543 45667788888999999884 4776777788888999999986
Q ss_pred CCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcc-cccEEEccCccC
Q 003813 270 KNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPF-QLTGLGVRSCRL 322 (793)
Q Consensus 270 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~~~~ 322 (793)
.+ ++ .+...+|.++ +|+.+++.+|.........|..++ .++.+.+..+.+
T Consensus 332 ~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 332 AN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 55 54 6777788888 899999998887776667777664 678888776543
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=2.1e-14 Score=153.13 Aligned_cols=266 Identities=11% Similarity=0.091 Sum_probs=200.0
Q ss_pred CCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEE
Q 003813 60 SLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFL 139 (793)
Q Consensus 60 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 139 (793)
.+..++.+.+.. .++.+...+|.++ +|+.+++..+ ++.+...+|.++ +|+.+.+.. .+..+.+.+|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 457788888875 5888888899986 7999999877 776667788885 799999996 7888788899999999999
Q ss_pred EccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEE
Q 003813 140 SLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLD 219 (793)
Q Consensus 140 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 219 (793)
++++|.++ .++..+|. +.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++..-...+.. .+|+.+.
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~------~~L~~i~ 254 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE------SGITTVK 254 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT------CCCSEEE
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc------CCccEEE
Confidence 99999998 88888787 689999999866 66667788999999999988764 22211122221 5788888
Q ss_pred ccCcccccccccccCCCCCCCEEeCcCCcCC-----CCcchhhcCCCCCCEEEccCCCCccccChhhhhcCCCCcEEECC
Q 003813 220 LGSCQIFGHMTNQLGRFKGLNFLDLSNTTMD-----GSIPLSLGQIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRAN 294 (793)
Q Consensus 220 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 294 (793)
+. +.+......+|.+|++|+.+++.++.+. ...+.+|.+|++|+.+++.+ .+. .++..+|.+|++|+.+.+.
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEEC
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEEC
Confidence 84 4466666778888888888888877664 35566788888888888874 454 6777788888888888885
Q ss_pred CCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCC-CCCeEEeecCcc
Q 003813 295 GNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQK-KLNDLYISSTRI 346 (793)
Q Consensus 295 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~i 346 (793)
.+ +......+|..+ +|+.+.+.++......+..+..++ .++.+++..+.+
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 54 555666677777 777777777766554455555553 566666666554
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=3.1e-14 Score=152.78 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=58.6
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
+.+|+.+.+.++ ++.+...+|.+|++|+.+++..+ ++.+-..+|.+|.+|+.+++..+ ++.+...+|.+|++|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 455666666543 44455566777777777777643 55555667777777777777655 6656666777777777777
Q ss_pred CCCCcccccCchhHHhhcccCcE
Q 003813 495 MGENELVGNIPTWMGERFSRLII 517 (793)
Q Consensus 495 L~~N~l~~~~p~~~~~~l~~L~~ 517 (793)
+..+ +. .+.. .+.++++|+.
T Consensus 373 lp~~-~~-~~~~-~F~~c~~L~~ 392 (394)
T 4fs7_A 373 LPKR-LE-QYRY-DFEDTTKFKW 392 (394)
T ss_dssp EEGG-GG-GGGG-GBCTTCEEEE
T ss_pred ECCC-CE-Ehhh-eecCCCCCcE
Confidence 7544 22 2322 2335555554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=8.9e-15 Score=139.44 Aligned_cols=128 Identities=23% Similarity=0.288 Sum_probs=87.5
Q ss_pred cEEeCCCCCCCCCCCCccccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEE
Q 003813 13 QYLDLSGYNFKLHADTISWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLD 92 (793)
Q Consensus 13 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 92 (793)
++++++++.++.++..+ .++|++|++++|.++.++. .+..+++|++|++++|.++.+++..|.++++|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~-----~~~l~~L~L~~n~i~~ip~---~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-----PRDVTELYLDGNQFTLVPK---ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCSCC-----CTTCCEEECCSSCCCSCCG---GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCCCC-----CCCCCEEECCCCcCchhHH---HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 56777777776666543 2467777777777776542 456677777777777777777766677777777777
Q ss_pred CcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCcccc
Q 003813 93 LSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG 148 (793)
Q Consensus 93 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 148 (793)
|++|.+++..+.+|..+++|++|+|++|.++...+..|..+++|++|++++|.+..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 77777776666667777777777777777776555566677777777777776653
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.6e-15 Score=138.48 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=100.7
Q ss_pred CCCccEEEccCCccc-ccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813 415 SKNIEFFQLSKNHFS-GEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL 493 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 493 (793)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 67788888888888888888888865 677888888888888888887777777778888888
Q ss_pred eCCCCccccc-CchhHHhhcccCcEEEccCccccccCC---ccccCCCCcCEEEccc
Q 003813 494 DMGENELVGN-IPTWMGERFSRLIILNLRSNKFHGDFP---IQLCRLASLQILDVAY 546 (793)
Q Consensus 494 ~L~~N~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~ 546 (793)
++++|++++. .+..+. .+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888742 224444 67888888888888886554 4677788888887763
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.5e-14 Score=134.66 Aligned_cols=108 Identities=31% Similarity=0.392 Sum_probs=51.0
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEc
Q 003813 62 PSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSL 141 (793)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 141 (793)
++|++|++++|+++++++..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34455555555554444444444455555555555554433334444555555555555554444444444455555555
Q ss_pred cCCccccccChhhhcCCCCCcEEEcCCCC
Q 003813 142 QSNRLQGNISSLGLENLTSIQTLLLSGND 170 (793)
Q Consensus 142 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 170 (793)
++|.++ .++...+..+++|++|++++|+
T Consensus 108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence 555444 3333323444444444444443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.5e-16 Score=152.94 Aligned_cols=152 Identities=21% Similarity=0.254 Sum_probs=92.5
Q ss_pred CCCCCEEeCCCCcccccCch------hHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCccccccCcccccc
Q 003813 487 FTILEALDMGENELVGNIPT------WMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNLSGTIPRCINNF 560 (793)
Q Consensus 487 l~~L~~L~L~~N~l~~~~p~------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 560 (793)
...++.++++.+.+.|.+|. .+. .+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 34444445555555444443 444 56667777777776664 45 6666667777777777665 344333222
Q ss_pred ccCccccCCCCCCccccccCCccchhhhhhhhhccchhhhhhhccceeEEEcccCcceeeCccccccccCCceeeccCCc
Q 003813 561 SAMATTDSSDQSNDIFYASLGDEKIVEDALLVMKGFLVEYKSILNLVRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNL 640 (793)
Q Consensus 561 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 640 (793)
+.|+.|++++|++++ +| .+..+++|++|++++|+
T Consensus 93 --------------------------------------------~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 93 --------------------------------------------DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp --------------------------------------------HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred --------------------------------------------CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence 234667777777764 34 56677777777777777
Q ss_pred ccccCC-ccccCcCCCCEEECCCCcCCCCCccc----------ccCCCCCCeEEcccCccc
Q 003813 641 FTGRIP-DNIGVMRSIESLDFSANQLSGYIPQS----------MSNLSFLNYLNLSNNNLN 690 (793)
Q Consensus 641 l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 690 (793)
+++..+ +.+..+++|+.|++++|.+++.+|.. +..+++|++|| +|+++
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 774222 35677777777777777776665542 66777777776 55554
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=2.3e-14 Score=133.50 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=81.6
Q ss_pred eeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813 607 VRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN 686 (793)
Q Consensus 607 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 686 (793)
++.|+|++|+|++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 47788888888888888899999999999999999987777889999999999999999988888899999999999999
Q ss_pred CcccccCCC
Q 003813 687 NNLNGEIPS 695 (793)
Q Consensus 687 N~l~g~ip~ 695 (793)
|+++|.++.
T Consensus 112 N~~~c~c~~ 120 (170)
T 3g39_A 112 NPWDCACSD 120 (170)
T ss_dssp SCBCTTBGG
T ss_pred CCCCCCchh
Confidence 999999874
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.3e-14 Score=134.66 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=88.0
Q ss_pred cCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCC
Q 003813 32 LSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTS 111 (793)
Q Consensus 32 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 111 (793)
+..+.+|++|++++|.++.++.. ....++|++|++++|.++++ ..+..+++|++|++++|.+++..+..|..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~---~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCchhHHh---hhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45667777777777777765431 12233777777777777776 25777777777777777777544444577777
Q ss_pred CCEEeCcCCcCccCCcc--cccCCCCCCEEEccCCccccccChh---hhcCCCCCcEEEcCCCC
Q 003813 112 LKYLDLSFNQFNSVVPG--WLSKLNDLEFLSLQSNRLQGNISSL---GLENLTSIQTLLLSGND 170 (793)
Q Consensus 112 L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~i~~~---~~~~l~~L~~L~L~~n~ 170 (793)
|++|++++|.+.. +|. .+..+++|++|++++|.+. .++.. .+..+++|++|++++|.
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777777777755 343 5667777777777777776 45543 36667777777777664
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.4e-14 Score=134.59 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=107.9
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEE
Q 003813 414 FSKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEAL 493 (793)
Q Consensus 414 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 493 (793)
.+++|+.|++++|+++. +|......++|++|++++|.+++. ..+..+++|++|++++|++++..+..|..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 36889999999999985 454333344999999999999875 578889999999999999997766667899999999
Q ss_pred eCCCCcccccCch--hHHhhcccCcEEEccCccccccCCcc----ccCCCCcCEEEcccCccc
Q 003813 494 DMGENELVGNIPT--WMGERFSRLIILNLRSNKFHGDFPIQ----LCRLASLQILDVAYNNLS 550 (793)
Q Consensus 494 ~L~~N~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~ 550 (793)
++++|++. .+|. .+. .+++|++|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 94 ~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999996 6776 444 7899999999999998 45653 888999999999999875
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=8.6e-14 Score=130.03 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=79.7
Q ss_pred eeEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813 607 VRGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN 686 (793)
Q Consensus 607 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 686 (793)
++.|+|++|+|++..|..|.++++|++|+|++|++++..+..|+++++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 47788888888888888999999999999999999976667789999999999999999987777799999999999999
Q ss_pred CcccccCCC
Q 003813 687 NNLNGEIPS 695 (793)
Q Consensus 687 N~l~g~ip~ 695 (793)
|++.|.++.
T Consensus 115 N~~~c~~~~ 123 (174)
T 2r9u_A 115 NPWDCECRD 123 (174)
T ss_dssp SCBCTTBGG
T ss_pred CCccccccc
Confidence 999998763
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=5.6e-16 Score=148.96 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=37.0
Q ss_pred eeEEEcccCcceeeCc-cccccccCCceeeccCCcccccCCcc----------ccCcCCCCEEECCCCcCC
Q 003813 607 VRGIDISKNNFSGEVP-VEVTNLQGLQSLNFSYNLFTGRIPDN----------IGVMRSIESLDFSANQLS 666 (793)
Q Consensus 607 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~N~l~ 666 (793)
|+.|++++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|+.|| +|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 3556666666653222 35667777777777777777665543 67777888776 55554
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=2.7e-11 Score=129.77 Aligned_cols=127 Identities=16% Similarity=0.197 Sum_probs=75.7
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCCCCEEe
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTILEALD 494 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 494 (793)
+..|+.+.+.++.. .+...+|.+++.|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+|++|+.+.
T Consensus 264 c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 56666666654433 2555667777777777775 3455455667777777777777643 5556667777777777777
Q ss_pred CCCCcccccCchhHHhhcccCcEEEccCccccccCCccccCCCCcCEEEcccCcc
Q 003813 495 MGENELVGNIPTWMGERFSRLIILNLRSNKFHGDFPIQLCRLASLQILDVAYNNL 549 (793)
Q Consensus 495 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 549 (793)
+..+ ++ .+....|.+|++|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 341 ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred ECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 7554 44 6666666677777777777765442 3455667777776665544
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.7e-12 Score=120.86 Aligned_cols=106 Identities=24% Similarity=0.243 Sum_probs=66.8
Q ss_pred ccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeC
Q 003813 38 LKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDL 117 (793)
Q Consensus 38 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 117 (793)
.+++++++|.++.+|.. + .++|++|+|++|+++++++..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 11 ~~~l~~s~n~l~~ip~~---~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG---I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCCSC---C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCcc---C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 35566666666665432 1 256666666666666666666666666666666666666555555666666666666
Q ss_pred cCCcCccCCcccccCCCCCCEEEccCCcccc
Q 003813 118 SFNQFNSVVPGWLSKLNDLEFLSLQSNRLQG 148 (793)
Q Consensus 118 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 148 (793)
++|+++++.+..|..+++|++|++++|.+..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6666666555556666666666666666653
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=6.1e-11 Score=127.01 Aligned_cols=318 Identities=11% Similarity=0.113 Sum_probs=167.4
Q ss_pred cCCCC-cccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCC---CCCCCCccCCCCCCCCEEECcCccCCCccccccc
Q 003813 32 LSGLS-LLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCK---LHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLG 107 (793)
Q Consensus 32 l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 107 (793)
|.+++ .|+.+.+..+ ++.+.+. +|.+|.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++.+...+|.
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~--AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSN--AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTT--TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred ccCCCCcCEEEEECCC-eeEEhHH--HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 44443 3555555432 4444222 34555556655555442 44555555555555555555433 3323344555
Q ss_pred CCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCCCCCcccccCCCCCc
Q 003813 108 NLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELGGKIPTSFGRFCKLK 187 (793)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 187 (793)
.+.+|+.+.+..+ +..+....|..+..|+.+.+..+ ++ .+...+|.+ ..|+.+.+..+ .......++..+..++
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~--~~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAK--VTRIGTNAFSECFALS 208 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTT--CCEECTTTTTTCTTCC
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCc--ccccccchhhhccccc
Confidence 5566666665532 33334445555556666655543 22 344444433 34555555544 3333334455555555
Q ss_pred EEEccCCcccccchhHHh--------hhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhcC
Q 003813 188 SFSTGFTNLSQDISEILG--------IFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLGQ 259 (793)
Q Consensus 188 ~L~l~~n~l~~~~~~~~~--------~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 259 (793)
................+. .........+..+.+.. .+......+|..+..|+.+.+.++... ....+|.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccc
Confidence 544333221110000000 00000013344444432 234455567888888999988766443 55677888
Q ss_pred CCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCeE
Q 003813 260 IANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLNDL 339 (793)
Q Consensus 260 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 339 (793)
+++|+.+.+. +.++ .++..+|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ +...-..+|.+|++|+.+
T Consensus 287 c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 287 CPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred ccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 8899999885 3444 677778889999999988764 55566677778888888887543 443445567777888888
Q ss_pred EeecCccccccChhHHhccccccEEEeeCc
Q 003813 340 YISSTRISAKIPRRFWNSIFQYWFLNISGN 369 (793)
Q Consensus 340 ~l~~n~i~~~~~~~~~~~~~~L~~L~ls~n 369 (793)
++.++.... ..+..+..|+.+.+..+
T Consensus 363 ~~~~~~~~~----~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 363 EYSGSRSQW----NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EESSCHHHH----HTCBCCCCC--------
T ss_pred EECCceeeh----hhhhccCCCCEEEeCCC
Confidence 777765421 11223445555555443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.5e-12 Score=120.02 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=54.6
Q ss_pred cEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCc
Q 003813 39 KHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLS 118 (793)
Q Consensus 39 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 118 (793)
+.+++++|.++.+|.. + .++|++|+|++|+++++++..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 15 ~~l~~~~n~l~~iP~~---~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG---I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSC---C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCC---c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 4455555555554331 1 1455555555555555555555555555555555555554433444555555555555
Q ss_pred CCcCccCCcccccCCCCCCEEEccCCccc
Q 003813 119 FNQFNSVVPGWLSKLNDLEFLSLQSNRLQ 147 (793)
Q Consensus 119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 147 (793)
+|+++++.+..|..+++|++|++++|.+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 55555544444555555555555555554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=4.1e-14 Score=149.35 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=36.6
Q ss_pred eeEEEcccCcceee----CccccccccCCceeeccCCccccc----CCccccCcCCCCEEECCCCcCCCCCcccc
Q 003813 607 VRGIDISKNNFSGE----VPVEVTNLQGLQSLNFSYNLFTGR----IPDNIGVMRSIESLDFSANQLSGYIPQSM 673 (793)
Q Consensus 607 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 673 (793)
|++|||++|.+++. ++..+...++|++|+|++|.++.. ++..+...++|++|||++|.++......+
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 45555555555432 234455556666667766666642 23334445666777777776664444333
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=5.5e-12 Score=132.91 Aligned_cols=86 Identities=21% Similarity=0.208 Sum_probs=54.5
Q ss_pred eEEEccc-CcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEccc
Q 003813 608 RGIDISK-NNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSN 686 (793)
Q Consensus 608 ~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 686 (793)
+.|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 4555554 555555555666666666666666666666666666666666666666666655555555554 66666666
Q ss_pred CcccccCC
Q 003813 687 NNLNGEIP 694 (793)
Q Consensus 687 N~l~g~ip 694 (793)
|++.|.|+
T Consensus 113 N~~~c~c~ 120 (347)
T 2ifg_A 113 NPLHCSCA 120 (347)
T ss_dssp SCCCCCGG
T ss_pred CCccCCCc
Confidence 66666554
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.20 E-value=2.1e-09 Score=114.60 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=44.9
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCCccccccCccccCCCC
Q 003813 415 SKNIEFFQLSKNHFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNNRLSGIIPTSFNNFTI 489 (793)
Q Consensus 415 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 489 (793)
+++|+.+.+.++.++.+...+|.+|.+|+.++|..+ ++.+-..+|.+|.+|+.+.+..+ ++.+...+|.+++.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 455666666555555555666777777777777543 55455566777777777766543 55555666666643
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=2.5e-11 Score=127.85 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=39.3
Q ss_pred eEEEcccCcceeeCccccccccCCceeeccCCcccccCCccccCcCCCCEEECCCCcCCC
Q 003813 608 RGIDISKNNFSGEVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMRSIESLDFSANQLSG 667 (793)
Q Consensus 608 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 667 (793)
+.|||++|+|++..|..|.++++|+.|+|++|+|++..|..|..++ |+.|+|++|.+..
T Consensus 59 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 5566666666666666677777777777777777755555555554 7777777777663
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=3.5e-12 Score=134.49 Aligned_cols=63 Identities=22% Similarity=0.208 Sum_probs=37.5
Q ss_pred CCccEEEccCccccccc----ccccCCCCCCCEEeCcCCcCCCCc----chhhcCCCCCCEEEccCCCCcc
Q 003813 213 NELESLDLGSCQIFGHM----TNQLGRFKGLNFLDLSNTTMDGSI----PLSLGQIANLEYLDLSKNELNG 275 (793)
Q Consensus 213 ~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~ 275 (793)
++|++|+|++|.+.... +..+...++|++|+|++|.+++.. +..+...++|++|+|++|.+++
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 55666666666664322 344555566777777777766432 2334455677777777777653
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=8.9e-09 Score=109.63 Aligned_cols=305 Identities=10% Similarity=0.072 Sum_probs=183.5
Q ss_pred cccCCCCcccEEEcCCccCCCCCchhHhhCCCCCccEEEccCCCCCCCCCccCCCCCCCCEEECcCccCCCcccccccCC
Q 003813 30 SWLSGLSLLKHLYISSVNLSKASDSLLVINSLPSLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNL 109 (793)
Q Consensus 30 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 109 (793)
+|+....+|+.+.+.. .++.+++. +|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +..+...+|...
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~--aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEA--NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT 113 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTT--TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC
T ss_pred cccccccCCEEEEeCC-CccChHHH--HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC
Confidence 3566667777777764 35555333 4667788888887643 777777777776 5777766543 443444556554
Q ss_pred CCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhhcCCCCCcEEEcCCCCCCC-----------CCCcc
Q 003813 110 TSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGLENLTSIQTLLLSGNDELG-----------GKIPT 178 (793)
Q Consensus 110 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~-----------~~~~~ 178 (793)
+|+.+++..+ +..+....|... +|+...+..+ ++ .+...+|..+..++...+..+.... .....
T Consensus 114 -~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 114 -DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp -CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred -CcccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceec
Confidence 6788877654 333344455444 4666555443 33 4444446677777777665543110 11122
Q ss_pred cccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCcccccccccccCCCCCCCEEeCcCCcCCCCcchhhc
Q 003813 179 SFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQLGRFKGLNFLDLSNTTMDGSIPLSLG 258 (793)
Q Consensus 179 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 258 (793)
.+.....+..+.+...... .....+... ..++.+.+..+ +......++..+..|+.+.+..+ ++.+...+|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~-----~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~ 260 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYG-----KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ 260 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE-ECTTTTTTC-----SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred cccccccccccccccceeE-Eeecccccc-----cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence 2334444444443322110 111111112 56777777554 34455566777888888888765 5555566778
Q ss_pred CCCCCCEEEccCCCCccccChhhhhcCCCCcEEECCCCeeeeecCCCCCCcccccEEEccCccCCCCCCcccccCCCCCe
Q 003813 259 QIANLEYLDLSKNELNGTVSEIHFVNLTKLVTFRANGNSLIFKINPNWVPPFQLTGLGVRSCRLGPRFPLWLQSQKKLND 338 (793)
Q Consensus 259 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 338 (793)
++.+|+.+.+..+ +. .++...|.++++|+.+.+.++.+.......|..+.+|+.+.+..+ +...-..+|.+|++|+.
T Consensus 261 ~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 261 NCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp TCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred eeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 8888888888654 43 566667888888888888887777777778888888888888653 44344567888888988
Q ss_pred EEeecCccccccChhHHhcc
Q 003813 339 LYISSTRISAKIPRRFWNSI 358 (793)
Q Consensus 339 L~l~~n~i~~~~~~~~~~~~ 358 (793)
+.+..+ ++. +....|..+
T Consensus 338 i~ip~~-v~~-I~~~aF~~c 355 (379)
T 4h09_A 338 ISYPKS-ITL-IESGAFEGS 355 (379)
T ss_dssp CCCCTT-CCE-ECTTTTTTS
T ss_pred EEECCc-cCE-EchhHhhCC
Confidence 888654 433 344444433
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=2.7e-09 Score=111.35 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=47.0
Q ss_pred cceeEEEcccCcceeeCccccc---cccCCceeeccCCccccc----CCccccCcCCCCEEECCCCcCCCCCcccccC-C
Q 003813 605 NLVRGIDISKNNFSGEVPVEVT---NLQGLQSLNFSYNLFTGR----IPDNIGVMRSIESLDFSANQLSGYIPQSMSN-L 676 (793)
Q Consensus 605 ~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l 676 (793)
+.|+.|+|++|.+++..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+.. +
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 3445555555555433322222 356777777777777653 3444456677888888877776433333332 2
Q ss_pred CCCCeEEcccCc
Q 003813 677 SFLNYLNLSNNN 688 (793)
Q Consensus 677 ~~L~~L~ls~N~ 688 (793)
...+|++.++
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 3557777776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=1.2e-08 Score=106.36 Aligned_cols=166 Identities=15% Similarity=0.181 Sum_probs=81.2
Q ss_pred ccccccCCCCCCEEeCcCCcCccCCcccccCCCCCCEEEccCCccccccChhhh--cCCCCCcEEEcCCCCC-CCCC-Cc
Q 003813 102 IPSRLGNLTSLKYLDLSFNQFNSVVPGWLSKLNDLEFLSLQSNRLQGNISSLGL--ENLTSIQTLLLSGNDE-LGGK-IP 177 (793)
Q Consensus 102 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~--~~l~~L~~L~L~~n~~-~~~~-~~ 177 (793)
+...+..+|+|+.|++++|.-.. .+. +. +++|++|++..|.+....... + ..+++|++|+|+.+.. ..+. ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHH-HHHccCCCCcEEEEeccccccccchhH
Confidence 33455667778888877763112 222 32 678888888777664221111 3 2677888887753210 1110 00
Q ss_pred ccccCCCCCcEEEccCCcccccchhHHhhhccccCCCccEEEccCccccccccccc---CCCCCCCEEeCcCCcCCCCc-
Q 003813 178 TSFGRFCKLKSFSTGFTNLSQDISEILGIFSACVANELESLDLGSCQIFGHMTNQL---GRFKGLNFLDLSNTTMDGSI- 253 (793)
Q Consensus 178 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~L~~n~l~~~~- 253 (793)
..+.. .+ ....+++|++|++.+|.+....+..+ ..+++|++|+|+.|.+++..
T Consensus 240 ~~l~~--------------------~l---~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 240 NVFRP--------------------LF---SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp GGTGG--------------------GS---CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred HHHHH--------------------HH---hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 00000 00 00011455555555555543222222 23456677777666666532
Q ss_pred ---chhhcCCCCCCEEEccCCCCccccChhhhhc-CCCCcEEECCCCe
Q 003813 254 ---PLSLGQIANLEYLDLSKNELNGTVSEIHFVN-LTKLVTFRANGNS 297 (793)
Q Consensus 254 ---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~ 297 (793)
+..+..+++|+.|++++|.++..... .+.. + ...++++.++
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHHHHC--CSEEECCSBC
T ss_pred HHHHhhcccCCcceEEECCCCcCCHHHHH-HHHHHc--CCEEEecCCc
Confidence 22334457777777777766533221 2222 2 3556776665
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=5.4e-08 Score=95.90 Aligned_cols=84 Identities=24% Similarity=0.294 Sum_probs=61.9
Q ss_pred EEcccCcce---eeCccccccccCCceeeccCCcccc--cCCccccCcCCCCEEECCCCcCCCCCcccccCCC--CCCeE
Q 003813 610 IDISKNNFS---GEVPVEVTNLQGLQSLNFSYNLFTG--RIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLS--FLNYL 682 (793)
Q Consensus 610 L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 682 (793)
++++.|+.. +.++....++++|++|+|++|++++ .+|..++.+++|+.|+|++|++++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 666777433 2222233567889999999999987 4567778899999999999999865 3344444 89999
Q ss_pred EcccCcccccCCC
Q 003813 683 NLSNNNLNGEIPS 695 (793)
Q Consensus 683 ~ls~N~l~g~ip~ 695 (793)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999887773
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=2.2e-07 Score=91.51 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=68.1
Q ss_pred hhccceeEEEcccCccee--eCccccccccCCceeeccCCcccccCCccccCcC--CCCEEECCCCcCCCCCcc------
Q 003813 602 SILNLVRGIDISKNNFSG--EVPVEVTNLQGLQSLNFSYNLFTGRIPDNIGVMR--SIESLDFSANQLSGYIPQ------ 671 (793)
Q Consensus 602 ~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~------ 671 (793)
..++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. +.+..++ +|+.|+|++|.+++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457889999999999998 5567888999999999999999965 3456565 999999999999987763
Q ss_pred -cccCCCCCCeEEc
Q 003813 672 -SMSNLSFLNYLNL 684 (793)
Q Consensus 672 -~l~~l~~L~~L~l 684 (793)
.+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 4778899998873
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=5.6e-08 Score=91.33 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=40.4
Q ss_pred CCCCCCCEEECcCccCCCc----ccccccCCCCCCEEeCcCCcCccC----CcccccCCCCCCEEEc--cCCccccc---
Q 003813 83 ANFSSLTTLDLSENEFQGQ----IPSRLGNLTSLKYLDLSFNQFNSV----VPGWLSKLNDLEFLSL--QSNRLQGN--- 149 (793)
Q Consensus 83 ~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~--- 149 (793)
...++|++|+|++|.+... +...+...++|++|+|++|.+... +...+...++|++|++ ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3344555555555554421 122333344555555555555432 2233444555555555 55555421
Q ss_pred -cChhhhcCCCCCcEEEcCCCC
Q 003813 150 -ISSLGLENLTSIQTLLLSGND 170 (793)
Q Consensus 150 -i~~~~~~~l~~L~~L~L~~n~ 170 (793)
+.. .+...++|++|++++|.
T Consensus 142 ~l~~-~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 142 EIAN-MLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHH-HHHHCSSCCEEECCCSS
T ss_pred HHHH-HHHhCCCcCEEeccCCC
Confidence 111 14444556666666654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.32 E-value=8.8e-08 Score=89.96 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCCCccEEEccCC-ccccc----CCCCccCCCCCCEEEccCCccccc----CCCCCCCCCCccEEEccCCccccc----c
Q 003813 414 FSKNIEFFQLSKN-HFSGE----IPDCWMNWPRLRMLNLRNNNFTGS----LPMSIGTLSSLMSLNLRNNRLSGI----I 480 (793)
Q Consensus 414 ~~~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~ 480 (793)
..+.|+.|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3455666666665 55432 223344456666666666666521 122233445666777777766643 2
Q ss_pred CccccCCCCCCEEeC--CCCcccccCchhHH---hhcccCcEEEccCcccc
Q 003813 481 PTSFNNFTILEALDM--GENELVGNIPTWMG---ERFSRLIILNLRSNKFH 526 (793)
Q Consensus 481 ~~~~~~l~~L~~L~L--~~N~l~~~~p~~~~---~~l~~L~~L~L~~n~l~ 526 (793)
...+...++|++|+| ++|.+...-...+. ...++|++|+|++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 345556667777777 66766533222221 13466777777777664
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=3.1e-06 Score=76.97 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=7.8
Q ss_pred hcCCCCCcEEEcCCCC
Q 003813 155 LENLTSIQTLLLSGND 170 (793)
Q Consensus 155 ~~~l~~L~~L~L~~n~ 170 (793)
+..+++|++|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 3444555555555544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.2e-05 Score=73.04 Aligned_cols=84 Identities=8% Similarity=0.090 Sum_probs=48.9
Q ss_pred CccEEEccCCccccccCccccCCCCCCEEeCCCCc-ccccCchhHHh---hcccCcEEEccCcc-ccccCCccccCCCCc
Q 003813 465 SLMSLNLRNNRLSGIIPTSFNNFTILEALDMGENE-LVGNIPTWMGE---RFSRLIILNLRSNK-FHGDFPIQLCRLASL 539 (793)
Q Consensus 465 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~---~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L 539 (793)
.|+.||+++|.++...-..+.++++|+.|+|++|. +++.--..+.. .+++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56666666666655444455666666666666663 44322222321 12467777777774 553222345667888
Q ss_pred CEEEcccCc
Q 003813 540 QILDVAYNN 548 (793)
Q Consensus 540 ~~L~Ls~N~ 548 (793)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888875
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.56 E-value=0.00011 Score=63.76 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=51.6
Q ss_pred ceeeccCCccc-ccCCccccCcCCCCEEECCCCcCCCCCcccccCCCCCCeEEcccCcccccCCCC
Q 003813 632 QSLNFSYNLFT-GRIPDNIGVMRSIESLDFSANQLSGYIPQSMSNLSFLNYLNLSNNNLNGEIPSS 696 (793)
Q Consensus 632 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 696 (793)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++.|.+-..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence 37888888886 46676543 57999999999999877888999999999999999999887643
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.00015 Score=67.30 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=10.8
Q ss_pred hhcccCCCCCccEEEccCCcccc
Q 003813 408 ICQGENFSKNIEFFQLSKNHFSG 430 (793)
Q Consensus 408 ~~~~~~~~~~L~~L~L~~n~l~~ 430 (793)
++..+...+.|+.|+|++|.+..
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBH
T ss_pred HHHHHhhCCCcCEEEccCCCCCh
Confidence 33444444455555555555443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.98 E-value=0.00039 Score=64.45 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=8.3
Q ss_pred hcCCCCCCEEEccCCCCc
Q 003813 257 LGQIANLEYLDLSKNELN 274 (793)
Q Consensus 257 l~~l~~L~~L~L~~n~l~ 274 (793)
+..-+.|+.|+|++|++.
T Consensus 66 L~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCCcCEEEccCCCCC
Confidence 333444555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.47 E-value=0.0035 Score=54.19 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=17.6
Q ss_pred CccEEEccCCCCCCCCCccCCCCCCCCEEECcCccC
Q 003813 63 SLKELKLSFCKLHHFPPLSSANFSSLTTLDLSENEF 98 (793)
Q Consensus 63 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 98 (793)
+|++|+|++|+|+.+++..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344555555555555444444444555555444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.14 E-value=11 Score=30.15 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=28.3
Q ss_pred CCCCCCCccCCCCCCCCEEECcCccCCCcccccccCCCCCCEEeCcC
Q 003813 73 KLHHFPPLSSANFSSLTTLDLSENEFQGQIPSRLGNLTSLKYLDLSF 119 (793)
Q Consensus 73 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 119 (793)
.++.|...+|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 455666666666777776666654 3334455666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.35 E-value=21 Score=28.36 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=29.9
Q ss_pred cccccCCCCccCCCCCCEEEccCCcccccCCCCCCCCCCccEEEccCC
Q 003813 427 HFSGEIPDCWMNWPRLRMLNLRNNNFTGSLPMSIGTLSSLMSLNLRNN 474 (793)
Q Consensus 427 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 474 (793)
.++.+...+|.+|.+|+.+.|..+ ++.+-..+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344455567777777777777663 44455666777777777776543
Done!