Query 003814
Match_columns 793
No_of_seqs 790 out of 4630
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.8E-52 6.2E-57 472.8 34.1 359 218-619 15-389 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 6E-51 2E-55 460.4 34.7 343 233-618 6-355 (437)
3 1wdy_A 2-5A-dependent ribonucl 100.0 4.4E-42 1.5E-46 362.8 30.2 266 240-546 4-281 (285)
4 4g8k_A 2-5A-dependent ribonucl 100.0 2.7E-42 9.1E-47 376.0 28.2 293 238-580 22-328 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 8.6E-42 2.9E-46 372.2 30.9 284 235-564 18-322 (351)
6 3utm_A Tankyrase-1; tankyrase, 100.0 1.2E-40 4.3E-45 363.0 27.1 307 273-625 21-331 (351)
7 1wdy_A 2-5A-dependent ribonucl 100.0 2.5E-40 8.6E-45 349.4 26.6 259 274-579 3-279 (285)
8 4g8k_A 2-5A-dependent ribonucl 100.0 1.5E-39 5.2E-44 354.2 32.0 277 218-546 38-329 (337)
9 3d9h_A CDNA FLJ77766, highly s 100.0 3.9E-40 1.3E-44 350.7 24.0 258 238-544 12-280 (285)
10 2fo1_E LIN-12 protein; beta-ba 100.0 2.8E-40 9.5E-45 365.7 19.0 263 235-543 88-371 (373)
11 2xai_A ASB-9, ankyrin repeat a 100.0 1.9E-39 6.5E-44 340.5 22.8 247 240-569 2-252 (261)
12 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-40 8.2E-45 366.2 16.4 278 243-570 68-361 (373)
13 3d9h_A CDNA FLJ77766, highly s 100.0 9.4E-40 3.2E-44 347.7 19.9 246 273-566 12-266 (285)
14 2xai_A ASB-9, ankyrin repeat a 100.0 8.6E-39 2.9E-43 335.5 23.5 247 275-617 2-248 (261)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-38 3.7E-43 333.1 22.7 232 233-541 2-246 (253)
16 3ljn_A Hypothetical protein; a 100.0 2.6E-39 8.7E-44 356.3 18.6 255 272-567 16-301 (364)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 1.8E-38 6.1E-43 331.4 19.3 204 323-570 35-238 (253)
18 1oy3_D Transcription factor in 100.0 4.5E-38 1.5E-42 332.3 22.5 264 235-567 3-270 (282)
19 3ljn_A Hypothetical protein; a 100.0 4.6E-39 1.6E-43 354.2 14.1 267 233-545 12-316 (364)
20 3aji_A 26S proteasome non-ATPa 100.0 2.3E-37 7.9E-42 317.5 24.2 227 239-543 4-230 (231)
21 1k1a_A B-cell lymphoma 3-encod 100.0 8.3E-38 2.8E-42 322.6 20.3 229 236-542 4-240 (241)
22 3b7b_A Euchromatic histone-lys 100.0 8.8E-37 3E-41 314.4 24.8 215 273-568 8-223 (237)
23 1s70_B 130 kDa myosin-binding 100.0 5.7E-38 2E-42 335.1 14.4 264 247-564 4-274 (299)
24 3b7b_A Euchromatic histone-lys 100.0 2.8E-36 9.7E-41 310.6 24.8 228 233-539 3-231 (237)
25 4b93_B Ankyrin repeat domain-c 100.0 3.1E-37 1.1E-41 325.3 15.9 232 235-543 5-244 (269)
26 1oy3_D Transcription factor in 100.0 1.5E-36 5.1E-41 320.7 20.3 233 218-529 10-269 (282)
27 1k1a_A B-cell lymphoma 3-encod 100.0 1.8E-36 6.2E-41 312.5 20.1 221 272-570 5-231 (241)
28 3eu9_A Huntingtin-interacting 100.0 1E-35 3.5E-40 305.9 24.4 231 273-545 6-237 (240)
29 2dzn_A Probable 26S proteasome 100.0 1.1E-35 3.7E-40 304.2 23.6 219 241-539 2-226 (228)
30 3aji_A 26S proteasome non-ATPa 100.0 4.8E-36 1.6E-40 307.6 20.7 215 273-567 3-217 (231)
31 4b93_B Ankyrin repeat domain-c 100.0 1.2E-36 4E-41 320.9 15.0 215 272-567 7-230 (269)
32 2dzn_A Probable 26S proteasome 100.0 1.8E-35 6.2E-40 302.5 21.6 210 276-565 2-218 (228)
33 3kea_A K1L; tropism, ANK repea 100.0 8.1E-36 2.8E-40 317.3 18.8 237 251-545 9-248 (285)
34 2f8y_A Notch homolog 1, transl 100.0 5.6E-35 1.9E-39 298.0 21.7 217 252-545 2-218 (223)
35 1sw6_A Regulatory protein SWI6 100.0 1.5E-36 5.1E-41 329.6 9.4 259 252-566 30-327 (327)
36 3eu9_A Huntingtin-interacting 100.0 1.2E-33 4.2E-38 290.3 26.2 231 234-509 2-235 (240)
37 1s70_B 130 kDa myosin-binding 100.0 1.3E-34 4.5E-39 309.0 19.3 269 282-624 4-282 (299)
38 3kea_A K1L; tropism, ANK repea 100.0 4.4E-34 1.5E-38 303.9 16.7 210 288-546 12-223 (285)
39 2f8y_A Notch homolog 1, transl 100.0 1.3E-33 4.4E-38 287.9 17.1 202 287-569 2-205 (223)
40 2rfa_A Transient receptor pote 100.0 1.3E-32 4.6E-37 282.3 21.2 197 275-545 2-224 (232)
41 1sw6_A Regulatory protein SWI6 100.0 5.7E-34 2E-38 309.2 10.6 249 221-529 35-327 (327)
42 1ikn_D Protein (I-kappa-B-alph 100.0 1.3E-33 4.6E-38 290.9 10.3 163 236-401 3-174 (236)
43 2rfa_A Transient receptor pote 100.0 5.7E-32 1.9E-36 277.6 22.3 181 240-424 2-209 (232)
44 1ikn_D Protein (I-kappa-B-alph 100.0 3.3E-33 1.1E-37 287.9 12.6 217 272-565 4-229 (236)
45 3hra_A Ankyrin repeat family p 100.0 1E-31 3.4E-36 269.2 22.9 198 274-541 3-201 (201)
46 2etb_A Transient receptor pote 100.0 2.1E-32 7.3E-37 285.5 14.0 201 276-545 2-248 (256)
47 3hra_A Ankyrin repeat family p 100.0 6.1E-31 2.1E-35 263.5 21.9 181 239-424 3-190 (201)
48 2pnn_A Transient receptor pote 100.0 7.2E-32 2.5E-36 284.4 13.8 219 273-559 10-271 (273)
49 2pnn_A Transient receptor pote 100.0 2.8E-31 9.5E-36 279.9 15.4 221 233-522 5-271 (273)
50 4gpm_A Engineered protein OR26 100.0 2.3E-30 7.8E-35 252.9 19.6 157 243-404 6-162 (169)
51 2etb_A Transient receptor pote 100.0 7.5E-31 2.6E-35 273.8 15.5 181 240-424 1-233 (256)
52 3jxi_A Vanilloid receptor-rela 100.0 1.4E-30 4.7E-35 272.3 12.6 207 273-545 2-252 (260)
53 4gpm_A Engineered protein OR26 100.0 2.3E-29 7.9E-34 245.8 19.6 155 278-443 6-160 (169)
54 3v30_A DNA-binding protein rfx 100.0 1.8E-29 6E-34 246.7 17.3 170 241-415 2-171 (172)
55 3jxi_A Vanilloid receptor-rela 100.0 1.2E-29 4.1E-34 265.1 15.4 183 238-424 2-237 (260)
56 2aja_A Ankyrin repeat family p 100.0 1.1E-30 3.8E-35 287.4 1.6 268 236-570 87-364 (376)
57 2rfm_A Putative ankyrin repeat 100.0 1.5E-28 5E-33 244.8 16.7 164 233-401 27-190 (192)
58 3v31_A Ankyrin repeat family A 100.0 3.4E-28 1.2E-32 236.3 17.5 160 240-404 2-161 (167)
59 4hbd_A KN motif and ankyrin re 100.0 1.7E-28 5.7E-33 259.6 15.0 179 242-424 77-262 (276)
60 2vge_A RELA-associated inhibit 100.0 2E-30 6.9E-35 266.5 -0.2 195 223-424 3-200 (229)
61 2aja_A Ankyrin repeat family p 100.0 1.8E-30 6.1E-35 285.8 -0.9 260 218-540 93-371 (376)
62 3twr_A Tankyrase-2; ankyrin re 100.0 2.6E-28 8.7E-33 236.7 14.3 161 237-402 4-164 (165)
63 4hbd_A KN motif and ankyrin re 100.0 2.3E-28 7.8E-33 258.5 15.0 191 276-541 76-273 (276)
64 3f6q_A Integrin-linked protein 100.0 5.8E-28 2E-32 237.7 15.7 167 239-410 3-169 (179)
65 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.2E-27 3.9E-32 231.1 16.9 158 240-403 4-162 (162)
66 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.4E-27 8.2E-32 231.2 18.8 160 237-401 10-169 (169)
67 1awc_B Protein (GA binding pro 99.9 2.6E-27 8.9E-32 226.8 18.4 151 241-397 2-152 (153)
68 3v30_A DNA-binding protein rfx 99.9 1.6E-27 5.5E-32 232.7 16.1 69 485-558 103-171 (172)
69 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.6E-27 9E-32 227.2 16.9 154 241-400 2-155 (156)
70 2rfm_A Putative ankyrin repeat 99.9 3.4E-27 1.2E-31 234.9 17.6 149 272-424 31-179 (192)
71 1ihb_A P18-INK4C(INK6), cyclin 99.9 5.3E-27 1.8E-31 226.4 17.0 147 274-424 3-149 (162)
72 3v31_A Ankyrin repeat family A 99.9 8.6E-27 2.9E-31 226.4 18.4 146 275-424 2-147 (167)
73 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.9E-26 6.6E-31 224.7 19.0 148 273-424 11-158 (169)
74 2vge_A RELA-associated inhibit 99.9 1.2E-29 3.9E-34 260.8 -4.4 162 257-422 1-166 (229)
75 1awc_B Protein (GA binding pro 99.9 4E-26 1.4E-30 218.5 17.7 144 276-424 2-145 (153)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.5E-27 8.5E-32 244.9 9.2 179 239-424 3-193 (239)
77 3f6q_A Integrin-linked protein 99.9 5E-26 1.7E-30 223.9 15.9 143 274-419 3-145 (179)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 9.5E-26 3.2E-30 216.3 17.4 144 276-424 2-145 (156)
79 3twr_A Tankyrase-2; ankyrin re 99.9 3.7E-26 1.3E-30 221.4 14.4 148 273-424 5-152 (165)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.3E-27 2.8E-31 241.0 6.8 116 485-616 104-227 (239)
81 3t8k_A Uncharacterized protein 99.9 8.7E-26 3E-30 224.0 7.3 157 241-403 6-179 (186)
82 1d9s_A Cyclin-dependent kinase 99.9 6.6E-25 2.2E-29 205.8 11.8 126 273-402 9-135 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 6.4E-25 2.2E-29 211.0 11.4 140 273-417 9-149 (156)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 6.8E-25 2.3E-29 210.8 10.5 146 234-385 5-151 (156)
85 1d9s_A Cyclin-dependent kinase 99.9 1.5E-24 5.2E-29 203.3 11.3 132 233-370 4-136 (136)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 1.4E-23 4.9E-28 196.6 14.5 126 273-401 11-136 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.8E-23 9.7E-28 190.6 15.6 124 276-402 2-125 (126)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.8E-23 3E-27 187.3 15.8 126 240-370 1-126 (126)
89 3t8k_A Uncharacterized protein 99.9 1.4E-23 4.8E-28 208.1 11.2 143 276-424 6-166 (186)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 7.9E-23 2.7E-27 191.5 14.2 127 237-368 10-136 (136)
91 3deo_A Signal recognition part 99.9 8.6E-24 2.9E-28 208.9 3.6 108 275-385 43-150 (183)
92 3c5r_A BARD-1, BRCA1-associate 99.9 4.5E-23 1.6E-27 193.3 7.7 126 273-401 7-132 (137)
93 3ui2_A Signal recognition part 99.9 8E-24 2.7E-28 219.4 1.9 108 274-384 43-150 (244)
94 3aaa_C Myotrophin, protein V-1 99.9 3.4E-22 1.1E-26 183.7 10.3 111 273-386 4-114 (123)
95 3deo_A Signal recognition part 99.9 5E-22 1.7E-26 196.2 12.1 140 238-400 41-181 (183)
96 2b0o_E UPLC1; arfgap, structur 99.9 5.8E-22 2E-26 211.9 13.4 140 275-424 150-298 (301)
97 3ui2_A Signal recognition part 99.9 7.1E-22 2.4E-26 204.7 12.7 143 238-403 42-185 (244)
98 3ehr_A Osteoclast-stimulating 99.9 3.5E-22 1.2E-26 203.5 8.4 127 274-403 71-198 (222)
99 3c5r_A BARD-1, BRCA1-associate 99.9 1E-21 3.5E-26 184.0 9.5 120 301-423 1-120 (137)
100 2b0o_E UPLC1; arfgap, structur 99.8 2E-21 6.8E-26 207.8 11.8 142 240-391 150-299 (301)
101 3ehr_A Osteoclast-stimulating 99.8 5.3E-22 1.8E-26 202.1 6.8 139 235-378 67-206 (222)
102 3aaa_C Myotrophin, protein V-1 99.8 4.4E-21 1.5E-25 176.2 10.5 118 238-360 4-121 (123)
103 1dcq_A PYK2-associated protein 99.8 9.9E-20 3.4E-24 192.3 18.7 164 237-403 62-263 (278)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.3E-20 1.8E-24 160.1 12.2 93 275-370 1-93 (93)
105 3lvq_E ARF-GAP with SH3 domain 99.8 7.9E-20 2.7E-24 209.4 15.3 137 275-421 131-276 (497)
106 3jue_A Arfgap with coiled-coil 99.8 8.2E-20 2.8E-24 200.0 13.5 147 273-422 196-347 (368)
107 1dcq_A PYK2-associated protein 99.8 2.6E-19 9E-24 189.0 14.7 128 241-371 130-264 (278)
108 3jue_A Arfgap with coiled-coil 99.8 1.7E-19 5.9E-24 197.5 13.7 149 235-388 193-347 (368)
109 2l6b_A NR1C; ankyrin, consensu 99.8 7.6E-20 2.6E-24 165.6 8.1 107 272-381 5-111 (115)
110 3lvq_E ARF-GAP with SH3 domain 99.8 2.9E-19 9.8E-24 204.7 14.8 135 242-386 133-275 (497)
111 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.2E-19 1.8E-23 153.8 12.1 93 310-403 1-93 (93)
112 2l6b_A NR1C; ankyrin, consensu 99.8 9.4E-19 3.2E-23 158.4 9.1 109 306-416 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.1E-16 3.7E-21 143.9 10.9 89 273-364 21-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 3.1E-16 1E-20 140.9 10.5 94 303-397 16-109 (110)
115 4dve_A Biotin transporter BIOY 25.2 4.4E+02 0.015 24.9 14.5 22 636-657 23-44 (198)
116 2lug_A Myelin basic protein; i 22.2 41 0.0014 21.8 1.6 25 72-96 12-36 (36)
117 3gvo_A Pumilio 2, pumilio homo 20.2 1.5E+02 0.005 30.9 6.6 88 237-324 69-158 (351)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-52 Score=472.84 Aligned_cols=359 Identities=20% Similarity=0.202 Sum_probs=305.4
Q ss_pred chhhHHhhcCCCCc---------CCcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCc
Q 003814 218 AQPAVSLSQPGAVS---------GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARR 288 (793)
Q Consensus 218 ~~~l~~l~~~G~~~---------~~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~ 288 (793)
.+|++.|+..|+.. .+++..+..|+||||+||..|+.+++++|++.+. +++.+ +..|+||||+|+..|+
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAK-AKDDQTPLHCAARIGH 92 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSCC-CTTSCCHHHHHHHHTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCC-CCCCCCHHHHHHHCCC
Confidence 34555555544432 2567788889999999999999999999998754 44444 7889999999999999
Q ss_pred HHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 003814 289 TLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT 368 (793)
Q Consensus 289 ~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~g 368 (793)
.++|++|++ +|++++.+|..|.||||+|+..|+.+++++|++++++.. ..+..|.||||+|+..|+.+++++|+++|
T Consensus 93 ~~~v~~Ll~--~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 169 (437)
T 1n11_A 93 TNMVKLLLE--NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERD 169 (437)
T ss_dssp HHHHHHHHH--HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHh--CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 999999999 799999999999999999999999999999999998876 67888999999999999999999999999
Q ss_pred CCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCC--Ccc
Q 003814 369 KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP--GMR 446 (793)
Q Consensus 369 ad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~--~~~ 446 (793)
++++..+..|.||||.|+..|+.+++++|++++++. +..+.+|.||||+|+..|+ .++++.|+..+. +..
T Consensus 170 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~ 241 (437)
T 1n11_A 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQ-------VEVARSLLQYGGSANAE 241 (437)
T ss_dssp CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999999999999885 7788899999999999886 788898887654 445
Q ss_pred cccCCchhHHHHH----HHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHH
Q 003814 447 AILDPKLMHLQAL----ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMF 522 (793)
Q Consensus 447 ~~~~~t~lh~a~~----~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~L 522 (793)
+..+.||+|.++. +++++|+++ +.+++..+..|.||||+|++.|+.+++++|+++|++ ++.+|..|+|||
T Consensus 242 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L 315 (437)
T 1n11_A 242 SVQGVTPLHLAAQEGHAEMVALLLSK-----QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPL 315 (437)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHTT-----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHhc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHH
Confidence 6678899999984 566665543 677788888999999999999999999999999998 888899999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhCCCCcccccCCchhHhHHHhhhHHHHHHhhc-cchhH
Q 003814 523 HIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ-PSYRE 601 (793)
Q Consensus 523 h~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~~~~~l~l~~Ga~~~~~~~l~~~~~v~~ll~-~~~~~ 601 (793)
|+|+..|+.+++++|+++|++++. +|..|+||||+|++.|+.+ .++.+++ +++++
T Consensus 316 ~~A~~~g~~~~v~~Ll~~gad~n~----~~~~g~t~L~~A~~~g~~~--------------------iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 316 HVASHYGNIKLVKFLLQHQADVNA----KTKLGYSPLHQAAQQGHTD--------------------IVTLLLKNGASPN 371 (437)
T ss_dssp HHHHHSSCSHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHH--------------------HHHHHHHTTCCSC
T ss_pred HHHHHcCcHHHHHHHHhcCCCCCC----CCCCCCCHHHHHHHCChHH--------------------HHHHHHHCcCCCC
Confidence 999999999999999999999885 8999999999999988754 3344443 45668
Q ss_pred hhhcCCCCchhhhhhhhh
Q 003814 602 AKNSEGRTPHILFSEEHR 619 (793)
Q Consensus 602 ~~n~~G~Tpl~la~e~~~ 619 (793)
.+|.+|+||+++|.+...
T Consensus 372 ~~~~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 372 EVSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp CCCSSSCCHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHcCc
Confidence 899999999999987653
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6e-51 Score=460.43 Aligned_cols=343 Identities=20% Similarity=0.215 Sum_probs=303.4
Q ss_pred CcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCC
Q 003814 233 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN 312 (793)
Q Consensus 233 ~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~ 312 (793)
+++..+..|+||||+||..|+.++|++|++.+. +++.. +..|.||||+||..|+.++|++|++ .|++++.+|..|.
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~ 81 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA-SPNVS-NVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQ 81 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHHTTC-CSCCS-SSCCCCHHHHHHHHTCHHHHHHHHH--HTCCSSCCCTTSC
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCCCCCC
Confidence 567889999999999999999999999998754 44444 8899999999999999999999999 7999999999999
Q ss_pred hHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChh
Q 003814 313 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD 392 (793)
Q Consensus 313 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~e 392 (793)
||||+|+..|+.++|++|+++|++++ ..+..|.||||+|+..|+.+++++|++++++++..+..|.||||.|+..|+.+
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~ 160 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred CHHHHHHHCCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence 99999999999999999999999987 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCC--CcccccCCchhHHHH----HHHHHHHH
Q 003814 393 VALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP--GMRAILDPKLMHLQA----LELVKRLW 466 (793)
Q Consensus 393 iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~--~~~~~~~~t~lh~a~----~~~~~~Ll 466 (793)
++++|++++++. +..+.+|.||||+|+..++ .++++.|+..+. ...+..+.||+|.++ .++++.|+
T Consensus 161 ~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 161 VAELLLERDAHP-NAAGKNGLTPLHVAVHHNN-------LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTC-------HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999986 8889999999999999987 799999997755 445567899999998 46777776
Q ss_pred HHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhh
Q 003814 467 EQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL 546 (793)
Q Consensus 467 ~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~ 546 (793)
+. +.+++..+..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 233 ~~-----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 233 QY-----GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp HT-----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred Hc-----CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC
Confidence 65 667788888999999999999999999999999999 889999999999999999999999999999999986
Q ss_pred hhhcccCCCCcHHHHHhHhCCCCcccccCCchhHhHHHhhhHHHHHHhhc-cchhHhhhcCCCCchhhhhhhh
Q 003814 547 IASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ-PSYREAKNSEGRTPHILFSEEH 618 (793)
Q Consensus 547 l~n~~D~~G~TpLHlAa~~~~~~~l~l~~Ga~~~~~~~l~~~~~v~~ll~-~~~~~~~n~~G~Tpl~la~e~~ 618 (793)
+|..|+||||+|+..|+.+. ++.+++ +.+++.+|..|+||||+|.+..
T Consensus 307 ----~~~~g~t~L~~A~~~g~~~~--------------------v~~Ll~~gad~n~~~~~g~t~L~~A~~~g 355 (437)
T 1n11_A 307 ----TTRMGYTPLHVASHYGNIKL--------------------VKFLLQHQADVNAKTKLGYSPLHQAAQQG 355 (437)
T ss_dssp ----CCSSCCCHHHHHHHSSCSHH--------------------HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ----CCCCCCCHHHHHHHcCcHHH--------------------HHHHHhcCCCCCCCCCCCCCHHHHHHHCC
Confidence 99999999999999987653 333333 4566889999999999998764
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.4e-42 Score=362.83 Aligned_cols=266 Identities=21% Similarity=0.240 Sum_probs=241.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHH
Q 003814 240 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 319 (793)
Q Consensus 240 ~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa 319 (793)
+|+||||.|++.|+.+++++|++.+.. ++...+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHH
Confidence 578999999999999999999987654 444447889999999999999999999999 89999999999999999999
Q ss_pred HhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcc----------cccCchHHHHHHHcC
Q 003814 320 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVIDAG 389 (793)
Q Consensus 320 ~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~----------~~~g~t~Lh~A~~~g 389 (793)
..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|+++|++++.. +..|.||||.|+..|
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 159 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence 9999999999999999987 78999999999999999999999999999999887 778999999999999
Q ss_pred ChhHHHHHHhh-CcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHH
Q 003814 390 LYDVALDLIQH-HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQ 468 (793)
Q Consensus 390 ~~eiv~~LL~~-~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~ 468 (793)
+.+++++|+++ +.++ +..|..|.||||+|+..++... ..++++.|++.
T Consensus 160 ~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~------------------------------~~~i~~~Ll~~ 208 (285)
T 1wdy_A 160 HVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSD------------------------------VEAITHLLLDH 208 (285)
T ss_dssp CHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTT------------------------------HHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccch------------------------------HHHHHHHHHHc
Confidence 99999999998 6664 8899999999999999876210 12555666554
Q ss_pred HHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHH-hCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhh
Q 003814 469 VLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL 546 (793)
Q Consensus 469 ~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~-~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~ 546 (793)
+.+++.++..|.||||+|++.|+.+++++|++ .|++ ++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 209 -----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 209 -----GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp -----TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred -----CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 67788888999999999999999999999999 7888 899999999999999999999999999999999985
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.7e-42 Score=375.96 Aligned_cols=293 Identities=20% Similarity=0.231 Sum_probs=253.0
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHH
Q 003814 238 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF 317 (793)
Q Consensus 238 d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~ 317 (793)
+.+|.||||.|+++|+.++|++||+.+. +++.+.+..|+||||+||..|+.++|++|++ +|++++.+|..+.+|++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Ga-dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCccCCCCCcCHHHHHHHcCCHHHHHHHHH--cCCchhhhccCCCchhHH
Confidence 3457799999999999999999998765 4555534569999999999999999999999 899999999999999999
Q ss_pred HHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcc----------cccCchHHHHHHH
Q 003814 318 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVID 387 (793)
Q Consensus 318 Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~----------~~~g~t~Lh~A~~ 387 (793)
++..+..++++.+++.+++++ .+|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~ 177 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred HHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHH
Confidence 999999999999999999997 78999999999999999999999999999998754 4468999999999
Q ss_pred cCChhHHHHHHhh-CcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHH
Q 003814 388 AGLYDVALDLIQH-HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLW 466 (793)
Q Consensus 388 ~g~~eiv~~LL~~-~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll 466 (793)
.|+.+++++|+++ |+++ +.+|..|.||+|.++..+... . ..++++.|+
T Consensus 178 ~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~---~---------------------------~~~i~~lLl 226 (337)
T 4g8k_A 178 KGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDS---D---------------------------VEAITHLLL 226 (337)
T ss_dssp HTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTT---T---------------------------HHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcc---c---------------------------HHHHHHHHH
Confidence 9999999999976 6664 899999999999988765410 0 013445554
Q ss_pred HHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHh-CCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 003814 467 EQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM-YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 545 (793)
Q Consensus 467 ~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~-g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~ 545 (793)
++ +++++.++..|.||||+|++.|+.++++.|++. +++ ++.+|.+|+||||+|++.|+.++|++|+++|+++|
T Consensus 227 ~~-----gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 227 DH-----GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300 (337)
T ss_dssp HT-----TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred HC-----CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 43 778888889999999999999999999999986 566 89999999999999999999999999999999876
Q ss_pred hhhhcccCCCCcHHHHHhHhCCCCc--ccccCCchhH
Q 003814 546 LIASYKDENNNNMLHLAGKLAPPDR--LKIDSGAALQ 580 (793)
Q Consensus 546 ~l~n~~D~~G~TpLHlAa~~~~~~~--l~l~~Ga~~~ 580 (793)
. .||||+|++.++.+. +++++||+++
T Consensus 301 ~---------~~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 301 C---------GDLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp T---------CCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred C---------CCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 3 369999999998763 5567777653
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.6e-42 Score=372.22 Aligned_cols=284 Identities=17% Similarity=0.112 Sum_probs=251.9
Q ss_pred ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChH
Q 003814 235 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTA 314 (793)
Q Consensus 235 ~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~Tp 314 (793)
+..+..|.|+||.||+.|+.+.++.|+...+.+++.+ |..|.||||+|+..|+.++|++|++ .|++++.+|..|.||
T Consensus 18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~ 94 (351)
T 3utm_A 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQ--HGADVHAKDKGGLVP 94 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCH
T ss_pred eeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCcH
Confidence 3345567799999999999999999998777776665 8999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHH---------
Q 003814 315 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV--------- 385 (793)
Q Consensus 315 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A--------- 385 (793)
||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.+|++.|
T Consensus 95 L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~ 173 (351)
T 3utm_A 95 LHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHH
Confidence 999999999999999999999997 7899999999999999999999999999999999999999987764
Q ss_pred ------------HHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCch
Q 003814 386 ------------IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKL 453 (793)
Q Consensus 386 ------------~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~ 453 (793)
+..++.+.++.++...... ...+..|.||||+|+..++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~--------------------------- 225 (351)
T 3utm_A 174 TYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPK--------------------------- 225 (351)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTT---------------------------
T ss_pred HhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCcc---------------------------
Confidence 5566777777777766543 456778999999999886520
Q ss_pred hHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHH
Q 003814 454 MHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKI 533 (793)
Q Consensus 454 lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~i 533 (793)
..++++.|++. +.+++.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++
T Consensus 226 ----~~~~~~~Ll~~-----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~ 295 (351)
T 3utm_A 226 ----RKQVAELLLRK-----GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQT 295 (351)
T ss_dssp ----HHHHHHHHHHT-----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred ----HHHHHHHHHHc-----CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHH
Confidence 12556666554 677888899999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHcCCChhhhhhcccCCCCcHHHHHhH
Q 003814 534 FNLIYELGAHKDLIASYKDENNNNMLHLAGK 564 (793)
Q Consensus 534 v~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~ 564 (793)
+++|+++|++++. +|..|+||+|+|..
T Consensus 296 v~~Ll~~gad~~~----~~~~g~tal~~a~~ 322 (351)
T 3utm_A 296 CRLLLSYGSDPSI----ISLQGFTAAQMGNE 322 (351)
T ss_dssp HHHHHHTTCCTTC----CCTTSCCHHHHSCH
T ss_pred HHHHHHcCCCCCC----cCCCCCChhhhhhH
Confidence 9999999999986 99999999999943
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.2e-40 Score=363.03 Aligned_cols=307 Identities=15% Similarity=0.095 Sum_probs=253.5
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
+..+.|+||.||+.|+.+.|+.|+.. .+.+++.+|..|.||||+|+..|+.++|++|+++|++++ .+|..|.||||+|
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 98 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred ccccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHHH
Confidence 56789999999999999999999985 689999999999999999999999999999999999987 7899999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchh
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 432 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~ 432 (793)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++. +..+..|.||+|+|+..+. .
T Consensus 99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~-------~ 170 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPEL-------R 170 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHH-------H
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhh-------H
Confidence 9999999999999999999999999999999999999999999999999986 8889999999999886532 2
Q ss_pred hHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHc---CCHHHHHHHHHhCCC
Q 003814 433 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVEL---GNVEFLMVLIQMYPN 509 (793)
Q Consensus 433 ~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~---g~~eiv~~LL~~g~d 509 (793)
+.++.... ..++..++.......+...+.. .......+..|.||||.|+.. ++.+++++|+++|++
T Consensus 171 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~ 239 (351)
T 3utm_A 171 ERLTYEFK----------GHSLLQAAREADLAKVKKTLAL-EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239 (351)
T ss_dssp HHHHHHHH----------HHHHHHHHHTTCHHHHHHHTTT-CCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred HHHHhhhc----------ccHHHHHHHhccHHHHHHHHHh-hcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence 22222111 1122222211111112222222 222233567789999999999 558999999999999
Q ss_pred CcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhCCCCcccccCCchhHhHHHhhhHH
Q 003814 510 LIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFK 589 (793)
Q Consensus 510 ~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~~~~~l~l~~Ga~~~~~~~l~~~~ 589 (793)
++.+|..|+||||+|+..|+.+++++|+++|++++. +|..|+||||+|+..|+.+
T Consensus 240 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~----~d~~g~t~L~~A~~~~~~~-------------------- 294 (351)
T 3utm_A 240 -VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA----LDSLGQTALHRAALAGHLQ-------------------- 294 (351)
T ss_dssp -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHHTCHH--------------------
T ss_pred -cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCcHH--------------------
Confidence 889999999999999999999999999999999986 9999999999999998754
Q ss_pred HHHHhhc-cchhHhhhcCCCCchhhhhhhhhhhhhhh
Q 003814 590 EIEKVVQ-PSYREAKNSEGRTPHILFSEEHRRLVREG 625 (793)
Q Consensus 590 ~v~~ll~-~~~~~~~n~~G~Tpl~la~e~~~~l~~e~ 625 (793)
.++.+++ +++++.+|.+|+||+++|.+...+.+.+.
T Consensus 295 ~v~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~l~~~ 331 (351)
T 3utm_A 295 TCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSES 331 (351)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHSCHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCcCCCCCChhhhhhHHHHHHHHhc
Confidence 2333443 45668999999999999987766655443
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-40 Score=349.37 Aligned_cols=259 Identities=18% Similarity=0.181 Sum_probs=234.5
Q ss_pred CCCchHHHHHHHhCcHHHHHHHHhcCCCCccccc-ccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 274 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALR-NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 274 ~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
.+|.||||.|++.|+.++|++|++ .|++++.+ +..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 79 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHH--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence 358899999999999999999999 89999988 7889999999999999999999999999987 7899999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCccccccc----------CCCCCCHHHHHHhC
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR----------DGNGETALHVLARK 422 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~----------d~~G~TpLh~A~~~ 422 (793)
+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++++++. +.. +..|.||||.|+..
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999886 444 78899999999998
Q ss_pred CCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCC----HH
Q 003814 423 PSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN----VE 498 (793)
Q Consensus 423 g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~----~e 498 (793)
|+ .+++++|++. .+.+++..+..|.||||.|+..|+ .+
T Consensus 159 ~~----------------------------------~~~v~~Ll~~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 200 (285)
T 1wdy_A 159 GH----------------------------------VEVLKILLDE----MGADVNACDNMGRNALIHALLSSDDSDVEA 200 (285)
T ss_dssp TC----------------------------------HHHHHHHHHT----SCCCTTCCCTTSCCHHHHHHHCSCTTTHHH
T ss_pred CC----------------------------------HHHHHHHHHh----cCCCCCccCCCCCCHHHHHHHccccchHHH
Confidence 87 3566666543 366778888999999999999999 99
Q ss_pred HHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH-cCCChhhhhhcccCCCCcHHHHHhHhCCCCc--ccccC
Q 003814 499 FLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE-LGAHKDLIASYKDENNNNMLHLAGKLAPPDR--LKIDS 575 (793)
Q Consensus 499 iv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~gad~~~l~n~~D~~G~TpLHlAa~~~~~~~--l~l~~ 575 (793)
++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++. +|.+|+||||+|++.++.+. ++++.
T Consensus 201 i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~----~~~~g~t~l~~A~~~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 201 ITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND----TDSDGKTALLLAVELKLKKIAELLCKR 275 (285)
T ss_dssp HHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC----CCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc----cCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence 99999999999 88999999999999999999999999999 8999886 99999999999999987653 33445
Q ss_pred Cchh
Q 003814 576 GAAL 579 (793)
Q Consensus 576 Ga~~ 579 (793)
|+++
T Consensus 276 Ga~~ 279 (285)
T 1wdy_A 276 GAST 279 (285)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 5443
No 8
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.5e-39 Score=354.16 Aligned_cols=277 Identities=21% Similarity=0.218 Sum_probs=239.4
Q ss_pred chhhHHhhcCCCCcCCcccCCC-CCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHH
Q 003814 218 AQPAVSLSQPGAVSGGVERNCF-TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV 296 (793)
Q Consensus 218 ~~~l~~l~~~G~~~~~~~~~d~-~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL 296 (793)
...+..++++|+ ++|.++. .|+||||+||..|+.++|++||+.+. .++.+ +..+.+|+|.++..++.++++.++
T Consensus 38 ~~~V~~LL~~Ga---dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 112 (337)
T 4g8k_A 38 VDLVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLR-KKNGATPFILAAIAGSVKLLKLFL 112 (337)
T ss_dssp HHHHHHHHHHTC---CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCCC---CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-chhhh-ccCCCchhHHHHhcccchhhHHhh
Confidence 445555666666 5666654 59999999999999999999998755 44444 889999999999999999999999
Q ss_pred hcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCC---------CCCCCCCCHHHHHHHcCCHHHHHHHHh-
Q 003814 297 NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS---------IRGNKGATPLCMAALLGHKEMIWYLYS- 366 (793)
Q Consensus 297 ~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~---------~~~~~G~TpLh~Aa~~g~~eiv~~Ll~- 366 (793)
+ .+++++.+|..|.||||+|+..|+.+++++|+++|++++. ..+..|.||||+|+..|+.++|++|++
T Consensus 113 ~--~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~ 190 (337)
T 4g8k_A 113 S--KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 190 (337)
T ss_dssp T--TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred h--ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc
Confidence 9 8999999999999999999999999999999999998752 235569999999999999999999996
Q ss_pred cCCCCCcccccCchHHHHHHHcCC----hhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcC
Q 003814 367 VTKEEDLKEEDRIELLVAVIDAGL----YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSV 442 (793)
Q Consensus 367 ~gad~n~~~~~g~t~Lh~A~~~g~----~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~ 442 (793)
.|++++.++..|.|++|.++..+. .+++++|+++|+++ +.+|.+|+||||+|+..|+
T Consensus 191 ~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~------------------ 251 (337)
T 4g8k_A 191 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKH------------------ 251 (337)
T ss_dssp SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTC------------------
T ss_pred cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhh------------------
Confidence 599999999999999998876654 35889999999996 8999999999999999987
Q ss_pred CCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHH
Q 003814 443 PGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMF 522 (793)
Q Consensus 443 ~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~L 522 (793)
.+.++.|++ ..+.+++.+|..|.||||+|++.|+.++|++|+++|++ + ++.|||
T Consensus 252 ----------------~~~v~~Ll~----~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~-----n~~~~L 305 (337)
T 4g8k_A 252 ----------------LGLVQRLLE----QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS-T-----DCGDLV 305 (337)
T ss_dssp ----------------HHHHHHHHT----STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-S-----TTCCHH
T ss_pred ----------------hHHHHHHHH----hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C-----CCCCHH
Confidence 244444433 34778899999999999999999999999999999998 4 346799
Q ss_pred HHHHHcCCHHHHHHHHHcCCChhh
Q 003814 523 HIAVVHRQEKIFNLIYELGAHKDL 546 (793)
Q Consensus 523 h~A~~~g~~~iv~~Ll~~gad~~~ 546 (793)
|+|+.+|+.++|++|+++||++|.
T Consensus 306 ~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 306 MTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCC--
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC
Confidence 999999999999999999999986
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-40 Score=350.66 Aligned_cols=258 Identities=14% Similarity=0.108 Sum_probs=179.5
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCc----------cccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCccccc
Q 003814 238 CFTSYAPLHLAALKGDWDFARNFFNLNPE----------AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALR 307 (793)
Q Consensus 238 d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~----------~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~ 307 (793)
...|.|+||+|+..|+.+.+..++...+. ..+ ..|..|+||||+||..|+.++|++|++ .|++++.+
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~ 88 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLM-GDAVSDWSPMHEAAIHGHQLSLRNLIS--QGWAVNII 88 (285)
T ss_dssp ------------------------------CCSEECCCCTTC-SSSCCSCCHHHHHHHTTCHHHHHHHHH--TTCCSCEE
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCccc-CCCccCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCc
Confidence 45688999999999998887776654322 222 248899999999999999999999999 89999999
Q ss_pred ccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHH
Q 003814 308 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID 387 (793)
Q Consensus 308 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~ 387 (793)
|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+ +|.||||+|+.
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~ 166 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR 166 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHH
Confidence 9999999999999999999999999999987 789999999999999999999999999999988654 49999999999
Q ss_pred cCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHH
Q 003814 388 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE 467 (793)
Q Consensus 388 ~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~ 467 (793)
.|+.+++++|++.++++ +.+|.+|.||||+|+..|+ .++++.|++
T Consensus 167 ~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~----------------------------------~~~v~~Ll~ 211 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQ----------------------------------RACVKKLLE 211 (285)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTC----------------------------------HHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc----------------------------------HHHHHHHHH
Confidence 99999999999998875 6777777777777777665 244555544
Q ss_pred HHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCh
Q 003814 468 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL-GAHK 544 (793)
Q Consensus 468 ~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-gad~ 544 (793)
. +.+++. +..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+ ++.+++++|+++ |+++
T Consensus 212 ~-----ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 212 S-----GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp T-----TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred C-----CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence 3 333332 45566666666666666666666666666 5666666666666666 334666666665 5443
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.8e-40 Score=365.67 Aligned_cols=263 Identities=18% Similarity=0.185 Sum_probs=213.3
Q ss_pred ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHH--------hcCCCCcccc
Q 003814 235 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV--------NLMTPEDLAL 306 (793)
Q Consensus 235 ~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL--------~~~~gad~~~ 306 (793)
+..+..|+||||.|+..|+ ++++.|+.. .++...+..|+||||+||..|+.++|++|+ + .|++++.
T Consensus 88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~--~ga~vn~ 161 (373)
T 2fo1_E 88 TEPEPESPIKLHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA--AGADVNA 161 (373)
T ss_dssp ------CCCHHHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH--TCCCTTC
T ss_pred cCCCCCCccHHHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHh--cCCCCcC
Confidence 3467889999999999665 788777642 344442378999999999999998888876 6 7999999
Q ss_pred cccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC---CCCCcccccCchHHH
Q 003814 307 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT---KEEDLKEEDRIELLV 383 (793)
Q Consensus 307 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~g---ad~n~~~~~g~t~Lh 383 (793)
+|..|.||||+|+..|+.++|++|+++|++++ .++..|.||||+|+..|+.+++++|++++ ++++..+..|.||||
T Consensus 162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~ 240 (373)
T 2fo1_E 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 240 (373)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence 99999999999999999999999999999997 78999999999999999999999999998 899999999999999
Q ss_pred HHHHcC---ChhHHHHHHhhCccccc-------ccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCch
Q 003814 384 AVIDAG---LYDVALDLIQHHPQLAM-------ARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKL 453 (793)
Q Consensus 384 ~A~~~g---~~eiv~~LL~~~~~~~~-------~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~ 453 (793)
+|+..+ +.+++++|++.++++.. ..|..|.||||+|+..|+
T Consensus 241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~----------------------------- 291 (373)
T 2fo1_E 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN----------------------------- 291 (373)
T ss_dssp HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC-----------------------------
T ss_pred HHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCC-----------------------------
Confidence 999998 89999999999988621 256677888888887776
Q ss_pred hHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHH
Q 003814 454 MHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKI 533 (793)
Q Consensus 454 lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~i 533 (793)
.+++++|+++. +.+++.+|..|.||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+.+|+.++
T Consensus 292 -----~~~v~~Ll~~~----~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~i 361 (373)
T 2fo1_E 292 -----MPIVKYLVGEK----GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNI 361 (373)
T ss_dssp -----HHHHHHHHHHS----CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHH
T ss_pred -----HHHHHHHHHhc----CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHH
Confidence 35666665542 356677777778888888888888888888888777 77777778888888888888888
Q ss_pred HHHHHHcCCC
Q 003814 534 FNLIYELGAH 543 (793)
Q Consensus 534 v~~Ll~~gad 543 (793)
+++|++++++
T Consensus 362 v~~Ll~~~a~ 371 (373)
T 2fo1_E 362 VDIFDRCRPE 371 (373)
T ss_dssp HHHHHTTC--
T ss_pred HHHHHhcCcc
Confidence 8888777765
No 11
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=340.52 Aligned_cols=247 Identities=17% Similarity=0.139 Sum_probs=199.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHH
Q 003814 240 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 319 (793)
Q Consensus 240 ~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa 319 (793)
+|+||||+||..|+.+++++|++.+. +++.. |..|.||||+|+..|+.++|++|++ .|++++.+|..|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGW-AVNII-TADHVSPLHEACLGGHLSCVKILLK--HGAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC-CSSCC-CTTCCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHH
Confidence 57888888888888888888887644 44443 7788888888888888888888888 78888888888888888888
Q ss_pred HhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHh
Q 003814 320 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 399 (793)
Q Consensus 320 ~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~ 399 (793)
..|+.+++++|+++|++++ .+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 8888888888888888875 35568888888888888888888888888888888888888888888888888888888
Q ss_pred hCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCcccccc
Q 003814 400 HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGE 479 (793)
Q Consensus 400 ~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~ 479 (793)
.|+++ +.
T Consensus 156 ~g~~~-~~------------------------------------------------------------------------ 162 (261)
T 2xai_A 156 SGADV-NQ------------------------------------------------------------------------ 162 (261)
T ss_dssp HTCCT-TC------------------------------------------------------------------------
T ss_pred cCCCC-CC------------------------------------------------------------------------
Confidence 77664 11
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhh----hhhcccCCC
Q 003814 480 LLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL----IASYKDENN 555 (793)
Q Consensus 480 ~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~----l~n~~D~~G 555 (793)
+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.++ +++++|++++....+ -.+.+|..|
T Consensus 163 -~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g 238 (261)
T 2xai_A 163 -GKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFG 238 (261)
T ss_dssp -CBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSC
T ss_pred -CCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhc
Confidence 23466777888888899999999999999 8999999999999999655 589999998775431 124589999
Q ss_pred CcHHHHHhHhCCCC
Q 003814 556 NNMLHLAGKLAPPD 569 (793)
Q Consensus 556 ~TpLHlAa~~~~~~ 569 (793)
+||||+|++...++
T Consensus 239 ~t~l~~~~~~~~p~ 252 (261)
T 2xai_A 239 IQQHHKITKLVLPE 252 (261)
T ss_dssp TTCGGGGGGSSSCH
T ss_pred hhccccCcccCCcH
Confidence 99999999876553
No 12
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-40 Score=366.18 Aligned_cols=278 Identities=16% Similarity=0.183 Sum_probs=219.2
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccc-cCCChHHHHHHHh
Q 003814 243 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVS 321 (793)
Q Consensus 243 T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d-~~G~TpLh~Aa~~ 321 (793)
++++-+...|+.++++.++.. ..+..|.||||+|+..|+ +++++|+. .+++.+| ..|+||||+|+..
T Consensus 68 ~~~~~~~~~g~~~~~~~~~~~-------~~~~~g~t~L~~Aa~~~~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~ 135 (373)
T 2fo1_E 68 GYGNGNDFLGDFNHTNLQIPT-------EPEPESPIKLHTEAAGSY-AITEPITR----ESVNIIDPRHNRTVLHWIASN 135 (373)
T ss_dssp ---------------------------------CCCHHHHHHHSSS-CCCSCCST----TTTTTCCCSSCCCHHHHHHCT
T ss_pred ccCCCCCcccccccccccccc-------CCCCCCccHHHHHhcCCc-hHHHHhcc----ccccccCCcCCCCHHHHHHHC
Confidence 466778888999999877643 237889999999999665 77777654 5788888 7999999999999
Q ss_pred CcHHHHHHHH--------hCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhH
Q 003814 322 GVTKIAEVMV--------NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDV 393 (793)
Q Consensus 322 g~~~iv~~Ll--------~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~ei 393 (793)
|+.+++++|+ ++|++++ .+|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.++
T Consensus 136 g~~~~v~~Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~ 214 (373)
T 2fo1_E 136 SSAEKSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM 214 (373)
T ss_dssp TCCSCCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHH
Confidence 9998877776 8999997 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhC---cccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHH
Q 003814 394 ALDLIQHH---PQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL 470 (793)
Q Consensus 394 v~~LL~~~---~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l 470 (793)
+++|++.+ .+ .+..|.+|.||||+|+..+.. .. .++++.|++.+.
T Consensus 215 v~~Ll~~~~~~~~-~~~~d~~g~t~L~~A~~~~~~----~~---------------------------~~~v~~Ll~~g~ 262 (373)
T 2fo1_E 215 MVYMLNSTKLKGD-IEELDRNGMTALMIVAHNEGR----DQ---------------------------VASAKLLVEKGA 262 (373)
T ss_dssp HHHHTTSHHHHHT-TSCCCTTSCCHHHHHHHSCST----TH---------------------------HHHHHHHHHHTC
T ss_pred HHHHHhcCccccC-hhhcCCCCCCHHHHHHHhCCc----ch---------------------------HHHHHHHHHCCC
Confidence 99999987 45 478899999999999988631 01 356666666643
Q ss_pred hcCc---cccccccCCCChHHHHHHHcCCHHHHHHHHHhC-CCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhh
Q 003814 471 LLDD---SKIGELLRKPSRLLFTAVELGNVEFLMVLIQMY-PNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL 546 (793)
Q Consensus 471 ~~~~---~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g-~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~ 546 (793)
..+. ...+..+..|.||||+|+..|+.++|++|++++ ++ ++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 263 ~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~ 341 (373)
T 2fo1_E 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341 (373)
T ss_dssp CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred CcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC
Confidence 3221 122345678999999999999999999999987 66 899999999999999999999999999999999986
Q ss_pred hhhcccCCCCcHHHHHhHhCCCCc
Q 003814 547 IASYKDENNNNMLHLAGKLAPPDR 570 (793)
Q Consensus 547 l~n~~D~~G~TpLHlAa~~~~~~~ 570 (793)
+|..|+||||+|+..|+.+.
T Consensus 342 ----~d~~g~t~l~~A~~~g~~~i 361 (373)
T 2fo1_E 342 ----VDATDHTARQLAQANNHHNI 361 (373)
T ss_dssp ----CCSSSCCHHHHHHHTTCHHH
T ss_pred ----CCCCCCCHHHHHHHcCCHHH
Confidence 99999999999999998653
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.4e-40 Score=347.65 Aligned_cols=246 Identities=17% Similarity=0.143 Sum_probs=199.4
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcC---------CCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCC
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLM---------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN 343 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~---------~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~ 343 (793)
...|.|+||+|+..|+.+.+..++... -...++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence 568999999999999987777765420 123467789999999999999999999999999999987 7899
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCC
Q 003814 344 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 423 (793)
Q Consensus 344 ~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g 423 (793)
.|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.+++. + .+.+|.||||+|+..|
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g 168 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRG 168 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999886 3 3456999999999998
Q ss_pred CCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 003814 424 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVL 503 (793)
Q Consensus 424 ~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~L 503 (793)
+ .++++.|++. +.+++..+..|.||||+|+..|+.+++++|
T Consensus 169 ~----------------------------------~~~v~~Ll~~-----g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L 209 (285)
T 3d9h_A 169 H----------------------------------VECVNSLIAY-----GGNIDHKISHLGTPLYLACENQQRACVKKL 209 (285)
T ss_dssp C----------------------------------HHHHHHHHHT-----TCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred C----------------------------------HHHHHHHHHC-----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 7 3667777665 667888889999999999999999999999
Q ss_pred HHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhC
Q 003814 504 IQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLA 566 (793)
Q Consensus 504 L~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~ 566 (793)
+++|++ ++ .|..|+||||+|+..++.+++++|+++|++++. +|.+|+||||+|+...
T Consensus 210 l~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~~ 266 (285)
T 3d9h_A 210 LESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQA----KNAEGKRPVELVPPES 266 (285)
T ss_dssp HHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCGGGGSCTTS
T ss_pred HHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHhcCcc
Confidence 999999 55 488999999999999999999999999999986 9999999999999543
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.6e-39 Score=335.53 Aligned_cols=247 Identities=15% Similarity=0.132 Sum_probs=204.0
Q ss_pred CCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHH
Q 003814 275 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 354 (793)
Q Consensus 275 ~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~ 354 (793)
+|+||||+||..|+.++|++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS--QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH
Confidence 58899999999999999999999 789999999999999999999999999999999999886 788899999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhH
Q 003814 355 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGF 434 (793)
Q Consensus 355 ~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~ 434 (793)
.|+.+++++|+++|++++. +.+|.||||.|+..|+.+++++|++.++++ +.+|
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~------------------------- 131 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKI------------------------- 131 (261)
T ss_dssp HTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCB-------------------------
T ss_pred cCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCC-------------------------
Confidence 9999999999999998875 345788888888888888888888877654 3333
Q ss_pred HHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q 003814 435 WRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKV 514 (793)
Q Consensus 435 ~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~ 514 (793)
..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 132 -----------------------------------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~- 162 (261)
T 2xai_A 132 -----------------------------------------------SHLGTPLYLACENQQRACVKKLLESGAD-VNQ- 162 (261)
T ss_dssp -----------------------------------------------TTTBCHHHHHHHTTCHHHHHHHHHHTCC-TTC-
T ss_pred -----------------------------------------------CCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCC-
Confidence 3456667777777888999999999999 554
Q ss_pred cCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhCCCCcccccCCchhHhHHHhhhHHHHHHh
Q 003814 515 DDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKV 594 (793)
Q Consensus 515 d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~~~~~l~l~~Ga~~~~~~~l~~~~~v~~l 594 (793)
|..|+||||+|+..++.+++++|+++|++++. +|.+|+||||+|+..++..++++..+++..+..
T Consensus 163 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~tpl~~A~~~~~~~~~ll~~~~~~~l~~----------- 227 (261)
T 2xai_A 163 GKGQDSPLHAVARTASEELACLLMDFGADTQA----KNAEGKRPVELVPPESPLAQLFLEREGPPSLMQ----------- 227 (261)
T ss_dssp CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCGGGGSCTTCTHHHHHHHC-CCCCHHH-----------
T ss_pred CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCC----cCCCCCChhhhccccccHHHHHHhccCCccHHH-----------
Confidence 88999999999999999999999999999986 999999999999977765555555544332211
Q ss_pred hccchhHhhhcCCCCchhhhhhh
Q 003814 595 VQPSYREAKNSEGRTPHILFSEE 617 (793)
Q Consensus 595 l~~~~~~~~n~~G~Tpl~la~e~ 617 (793)
....+.+|..|+||+|.+.+.
T Consensus 228 --~~~~~~r~~~g~t~l~~~~~~ 248 (261)
T 2xai_A 228 --LCRLRIRKCFGIQQHHKITKL 248 (261)
T ss_dssp --HHHHHHHTTSCTTCGGGGGGS
T ss_pred --HHHHHHHHHhchhccccCccc
Confidence 123478899999999998764
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-38 Score=333.10 Aligned_cols=232 Identities=21% Similarity=0.228 Sum_probs=149.8
Q ss_pred CcccCCCCCchHHHHHHHcC-------------CHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcC
Q 003814 233 GVERNCFTSYAPLHLAALKG-------------DWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 299 (793)
Q Consensus 233 ~~~~~d~~g~T~Lh~Aa~~G-------------~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~ 299 (793)
++|.+|.+|+||||+|+..| +.+++++|++.++.... ..|..|.||||+|+..|+.++|++|++
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~-- 78 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN-QTDRTGETALHLAARYSRSDAAKRLLE-- 78 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH--
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc-ccCCCCCcHHHHHHHcCCHHHHHHHHH--
Confidence 57888999999999999987 77788877776554333 336778888888888888888888887
Q ss_pred CCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCc
Q 003814 300 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI 379 (793)
Q Consensus 300 ~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~ 379 (793)
.|++++.+|..|.||||+|+..|+.+++++|+++++.....++..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 79 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 158 (253)
T 1yyh_A 79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 158 (253)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence 67788888888888888888888888888888877633336777788888888888888888888888888777777777
Q ss_pred hHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHH
Q 003814 380 ELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQAL 459 (793)
Q Consensus 380 t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~ 459 (793)
||||+|+..|+.+++++|+++|+++ +.+|
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~-------------------------------------------------- 187 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKNGANK-DMQN-------------------------------------------------- 187 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCT-TCCC--------------------------------------------------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-CCcC--------------------------------------------------
Confidence 7777777777777777777776654 3333
Q ss_pred HHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 003814 460 ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE 539 (793)
Q Consensus 460 ~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~ 539 (793)
..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|.+
T Consensus 188 ----------------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~ 244 (253)
T 1yyh_A 188 ----------------------NREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDL 244 (253)
T ss_dssp ----------------------TTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred ----------------------CCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3455666666667778888899999888 78888889999999999999999998886
Q ss_pred cC
Q 003814 540 LG 541 (793)
Q Consensus 540 ~g 541 (793)
..
T Consensus 245 ~~ 246 (253)
T 1yyh_A 245 EH 246 (253)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.6e-39 Score=356.27 Aligned_cols=255 Identities=16% Similarity=0.101 Sum_probs=212.6
Q ss_pred CCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHH
Q 003814 272 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 351 (793)
Q Consensus 272 ~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~ 351 (793)
.|.+|.||||+||..|+.++|++|++ .|++++.+|..|.||||+|+..|+.++|++|+++|++.+ +.+|.||||+
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L~~ 90 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPIHL 90 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHHHH
Confidence 36778888888888888888888888 788888888888888888888888888888888888543 3468888888
Q ss_pred HHHcCCHHHHHHHHhc----CCCCCc-----------------ccccCchHHHHHHHcC--ChhHHHHHHhhCccccccc
Q 003814 352 AALLGHKEMIWYLYSV----TKEEDL-----------------KEEDRIELLVAVIDAG--LYDVALDLIQHHPQLAMAR 408 (793)
Q Consensus 352 Aa~~g~~eiv~~Ll~~----gad~n~-----------------~~~~g~t~Lh~A~~~g--~~eiv~~LL~~~~~~~~~~ 408 (793)
|+..|+.+++++|+++ |++++. .+..|.||||+|+..| +.+++++|++.|+++ +.+
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~ 169 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAK 169 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCC
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-ccc
Confidence 8888888888888888 777766 7778888888888888 888888888888875 778
Q ss_pred CCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHH
Q 003814 409 DGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLL 488 (793)
Q Consensus 409 d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~L 488 (793)
|..|+||||+|+..|+ .+++++|++.+....+.+++..+..|.|||
T Consensus 170 d~~g~t~L~~A~~~g~----------------------------------~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L 215 (364)
T 3ljn_A 170 DKADETPLMRAMEFRN----------------------------------REALDLMMDTVPSKSSLRLDYANKQGNSHL 215 (364)
T ss_dssp CTTSCCHHHHHHHTTC----------------------------------HHHHHHHHHHCSCSSSCCTTCCCTTCCCTT
T ss_pred CCCCCCHHHHHHHcCC----------------------------------HHHHHHHHhcccccccccccccCCCCCcHH
Confidence 8888888888888876 367777777655444555888888999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhh--------hcccCCCCcHHH
Q 003814 489 FTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIA--------SYKDENNNNMLH 560 (793)
Q Consensus 489 h~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~--------n~~D~~G~TpLH 560 (793)
|+|+..|+.++|++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++... ...+..|+|||+
T Consensus 216 ~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 294 (364)
T 3ljn_A 216 HWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFV 294 (364)
T ss_dssp HHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTS
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccch
Confidence 999999999999999999999 89999999999999999999999999999998875410 015678889998
Q ss_pred HHhHhCC
Q 003814 561 LAGKLAP 567 (793)
Q Consensus 561 lAa~~~~ 567 (793)
+|+..++
T Consensus 295 ~aa~~~~ 301 (364)
T 3ljn_A 295 PAAADPS 301 (364)
T ss_dssp CSSCCHH
T ss_pred hhhhccC
Confidence 8887664
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.8e-38 Score=331.41 Aligned_cols=204 Identities=17% Similarity=0.161 Sum_probs=145.6
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCc
Q 003814 323 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 402 (793)
Q Consensus 323 ~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~ 402 (793)
+.+++++|+++|++++...|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.++
T Consensus 35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 114 (253)
T 1yyh_A 35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114 (253)
T ss_dssp -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 66666666666666655556666677777776677777777776666666666666677777776666677777766666
Q ss_pred ccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccC
Q 003814 403 QLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR 482 (793)
Q Consensus 403 ~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~ 482 (793)
...+.++..|.||||+|+..++. ++++.|++. +.+++..+.
T Consensus 115 ~~~~~~~~~g~t~L~~A~~~~~~----------------------------------~~v~~Ll~~-----g~~~~~~d~ 155 (253)
T 1yyh_A 115 TDLDARMHDGTTPLILAARLAVE----------------------------------GMLEDLINS-----HADVNAVDD 155 (253)
T ss_dssp SCTTCCCTTCCCHHHHHHHHTCS----------------------------------SHHHHHHHT-----TCCTTCBCT
T ss_pred CCccccCCCCCcHHHHHHHcChH----------------------------------HHHHHHHHc-----CCCCCCcCC
Confidence 44466666677777777766652 444444443 455666677
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHH
Q 003814 483 KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 562 (793)
Q Consensus 483 ~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlA 562 (793)
.|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++. +|..|+||||+|
T Consensus 156 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~----~d~~g~tpl~~A 230 (253)
T 1yyh_A 156 LGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI----TDHMDRLPRDIA 230 (253)
T ss_dssp TSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc----cccCCCCHHHHH
Confidence 788889999999999999999999999 889999999999999999999999999999999986 999999999999
Q ss_pred hHhCCCCc
Q 003814 563 GKLAPPDR 570 (793)
Q Consensus 563 a~~~~~~~ 570 (793)
++.|+.+.
T Consensus 231 ~~~g~~~i 238 (253)
T 1yyh_A 231 QERMHHDI 238 (253)
T ss_dssp HHTTCHHH
T ss_pred HHcCCHHH
Confidence 99998654
No 18
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.5e-38 Score=332.35 Aligned_cols=264 Identities=17% Similarity=0.116 Sum_probs=145.3
Q ss_pred ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCcc--ccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCC
Q 003814 235 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEA--VCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN 312 (793)
Q Consensus 235 ~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~--~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~ 312 (793)
+..|.+|+||||+||..|+.+++++|++.+... ++. .|..|+||||+||..|+.++|++|++ +|++++.+|..|.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~g~ 79 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL-QNDLGQTALHLAAILGEASTVEKLYA--AGAGVLVAERGGH 79 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSSCCCTTSC
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc-cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCC
Confidence 445556666666666666666666666543321 222 25556666666666666666666666 5666666666666
Q ss_pred hHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChh
Q 003814 313 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD 392 (793)
Q Consensus 313 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~e 392 (793)
||||+|+..|+.+++++|+++|++...... . +.+ .. ..+.....+.++++.+...+...
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~--~~~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~ 138 (282)
T 1oy3_D 80 TALHLACRVRAHTCACVLLQPRPSHPRDAS-D--TYL----------------TQ--SQDCTPDTSHAPAAVDSQPNPEN 138 (282)
T ss_dssp CHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------------------
T ss_pred CHHHHHHHcCCcchhHhhhccCCCCchhhH-H--HHh----------------hc--ccccCcchhcchhhhccccccch
Confidence 666666666666666666665554321000 0 000 00 00011122344444444433332
Q ss_pred HH-HHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHh
Q 003814 393 VA-LDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLL 471 (793)
Q Consensus 393 iv-~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~ 471 (793)
.. ..+...+.+ .+.+|..|.||||+|+..|+ .++++.|++.
T Consensus 139 ~~~~~~~~~~~~-~~~~~~~g~t~L~~A~~~g~----------------------------------~~~v~~Ll~~--- 180 (282)
T 1oy3_D 139 EEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKD----------------------------------AEMVRLLRDA--- 180 (282)
T ss_dssp -----CCCGGGG-TTCCCTTSCCHHHHHHHTTC----------------------------------HHHHHHHHHH---
T ss_pred hhhhhhhhhhhc-CCCcCCCCcCHHHHHHHcCC----------------------------------HHHHHHHHHc---
Confidence 22 222223333 35566666666666666665 2555555554
Q ss_pred cCccccccccC-CCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhc
Q 003814 472 LDDSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASY 550 (793)
Q Consensus 472 ~~~~~~~~~~~-~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~ 550 (793)
+.+++..+. .|.||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 181 --g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~---- 253 (282)
T 1oy3_D 181 --GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE---- 253 (282)
T ss_dssp --TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCC----
T ss_pred --CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCc----
Confidence 344455543 488899999999999999999999999 899999999999999999999999999999999986
Q ss_pred ccCCCCcHHHHHhHhCC
Q 003814 551 KDENNNNMLHLAGKLAP 567 (793)
Q Consensus 551 ~D~~G~TpLHlAa~~~~ 567 (793)
+|.+|.|||++|....+
T Consensus 254 ~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 254 DGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CC---------------
T ss_pred CCCcccccccccCCccc
Confidence 99999999999987654
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.6e-39 Score=354.21 Aligned_cols=267 Identities=17% Similarity=0.093 Sum_probs=233.1
Q ss_pred CcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCC
Q 003814 233 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN 312 (793)
Q Consensus 233 ~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~ 312 (793)
+.+..|.+|+||||+||..|+.++|++|++.+. +++.. |..|.||||+||..|+.++|++|++ .|++++ +.+|.
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~--~~~g~ 85 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGV-SPTIQ-NRFGCTALHLACKFGCVDTAKYLAS--VGEVHS--LWHGQ 85 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHHCCHHHHHHHHH--HCCCCC--CBTTB
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-Ccccc-CCCCCcHHHHHHHcCCHHHHHHHHH--CCCCcc--ccCCC
Confidence 456778889999999999999999999998754 45554 8999999999999999999999999 687555 35799
Q ss_pred hHHHHHHHhCcHHHHHHHHhC----CCCCCCC-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHhcCC
Q 003814 313 TALCFAAVSGVTKIAEVMVNK----NRELPSI-----------------RGNKGATPLCMAALLG--HKEMIWYLYSVTK 369 (793)
Q Consensus 313 TpLh~Aa~~g~~~iv~~Ll~~----g~~~~~~-----------------~~~~G~TpLh~Aa~~g--~~eiv~~Ll~~ga 369 (793)
||||+|+..|+.++|++|+++ |.+++ . ++..|.||||+|+..| +.++|++|+++|+
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga 164 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPE-SLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHH-HHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHH-HHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence 999999999999999999998 76654 3 6778999999999999 9999999999999
Q ss_pred CCCcccccCchHHHHHHHcCChhHHHHHHhhCccc----ccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCc
Q 003814 370 EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL----AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGM 445 (793)
Q Consensus 370 d~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~----~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~ 445 (793)
+++.++..|.||||+|+..|+.+++++|++.+++. ++.+|..|+||||+|+..|+
T Consensus 165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~--------------------- 223 (364)
T 3ljn_A 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW--------------------- 223 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC---------------------
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC---------------------
Confidence 99999999999999999999999999999999882 38889999999999999987
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCC-----------cccc
Q 003814 446 RAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL-----------IWKV 514 (793)
Q Consensus 446 ~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~-----------~~~~ 514 (793)
.++++.|+++ +++++..|..|.||||+|+..|+.+++++|++++++. ....
T Consensus 224 -------------~~~v~~Ll~~-----gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 285 (364)
T 3ljn_A 224 -------------EDVAMRFVEM-----GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP 285 (364)
T ss_dssp -------------HHHHHHHHTT-----TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCG
T ss_pred -------------HHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccc
Confidence 3677776654 7788889999999999999999999999999998762 1225
Q ss_pred cCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 003814 515 DDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 545 (793)
Q Consensus 515 d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~ 545 (793)
+..|+|||+.|+..++.+.+..|++.+++..
T Consensus 286 ~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 286 DRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316 (364)
T ss_dssp GGCCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhccCHHHHHHHHHHHHHHH
Confidence 6789999999999998888888888776654
No 20
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.3e-37 Score=317.48 Aligned_cols=227 Identities=19% Similarity=0.146 Sum_probs=200.8
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHH
Q 003814 239 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA 318 (793)
Q Consensus 239 ~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~A 318 (793)
..+.||||.|+..|+.+.+++|++.++...+.. |..|.||||+|+..|+.++|++|++ .|++++.+|..|.||||+|
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHH--hCCCCCCcCCCCCCHHHHH
Confidence 456789999999999999999998877665554 8899999999999999999999999 7999999999999999999
Q ss_pred HHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHH
Q 003814 319 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLI 398 (793)
Q Consensus 319 a~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL 398 (793)
+..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|+
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999986 78899999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccc
Q 003814 399 QHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIG 478 (793)
Q Consensus 399 ~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~ 478 (793)
+.++++ +.+|..
T Consensus 160 ~~g~~~-~~~~~~------------------------------------------------------------------- 171 (231)
T 3aji_A 160 FYKAST-NIQDTE------------------------------------------------------------------- 171 (231)
T ss_dssp HTTCCS-CCCCTT-------------------------------------------------------------------
T ss_pred hcCCCc-cccCCC-------------------------------------------------------------------
Confidence 887764 444444
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 003814 479 ELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH 543 (793)
Q Consensus 479 ~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad 543 (793)
|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.++|++
T Consensus 172 -----g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 172 -----GNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp -----SCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred -----CCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 45556666667778899999999999 788899999999999999999999999988765
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.3e-38 Score=322.55 Aligned_cols=229 Identities=18% Similarity=0.181 Sum_probs=126.1
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHh---cCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCC
Q 003814 236 RNCFTSYAPLHLAALKGDWDFARNFFN---LNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN 312 (793)
Q Consensus 236 ~~d~~g~T~Lh~Aa~~G~~~~v~~LL~---~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~ 312 (793)
.+|.+|+||||+||..|+.+++++|++ ..+..++.. |..|.||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVT--AGASPMALDRHGQ 80 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCC
Confidence 445555566666666666665555554 133333332 5555555555555555555555555 4555555555555
Q ss_pred hHHHHHHHhCcHHHHHHHHhCCC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc-ccCchHHHHHHH
Q 003814 313 TALCFAAVSGVTKIAEVMVNKNR----ELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVID 387 (793)
Q Consensus 313 TpLh~Aa~~g~~~iv~~Ll~~g~----~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~-~~g~t~Lh~A~~ 387 (793)
||||+|+..|+.+++++|+++++ +++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 55555555555555555555554 332 345555555555555555555555555555555544 445555555555
Q ss_pred cCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHH
Q 003814 388 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE 467 (793)
Q Consensus 388 ~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~ 467 (793)
.|+.+++++|+++|+++
T Consensus 160 ~~~~~~v~~Ll~~g~~~--------------------------------------------------------------- 176 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGANV--------------------------------------------------------------- 176 (241)
T ss_dssp TTCHHHHHHHHHTTCCT---------------------------------------------------------------
T ss_pred cCCHHHHHHHHHcCCCC---------------------------------------------------------------
Confidence 55555555555444432
Q ss_pred HHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 003814 468 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGA 542 (793)
Q Consensus 468 ~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga 542 (793)
+.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++.|.+.++
T Consensus 177 ----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 177 ----------NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp ----------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred ----------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 22333455555555566666777777777777 66677777777777777777777777766553
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=8.8e-37 Score=314.43 Aligned_cols=215 Identities=19% Similarity=0.184 Sum_probs=169.2
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
|.+|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 84 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQ--AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHLA 84 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTTSCCHHHHH
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHH--cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHH
Confidence 6677777777777777777777777 677777777777777777777777777777777777765 5667777777777
Q ss_pred HHcCCHHHHHHHHhcC-CCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccch
Q 003814 353 ALLGHKEMIWYLYSVT-KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQ 431 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~g-ad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~ 431 (793)
+..|+.+++++|+++| .+++..+..|.||||.|+..|+.+++++|++.++++ +
T Consensus 85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~------------------------- 138 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-N------------------------- 138 (237)
T ss_dssp HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-T-------------------------
T ss_pred HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C-------------------------
Confidence 7777777777777776 667777777777777777777777777777666553 3
Q ss_pred hhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCc
Q 003814 432 LGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI 511 (793)
Q Consensus 432 ~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~ 511 (793)
..+..|.||||+|+..|+.+++++|+++|++ +
T Consensus 139 -----------------------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~ 170 (237)
T 3b7b_A 139 -----------------------------------------------IRDNEENICLHWAAFSGCVDIAEILLAAKCD-L 170 (237)
T ss_dssp -----------------------------------------------CCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-T
T ss_pred -----------------------------------------------ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-C
Confidence 3334566777777778888999999999999 8
Q ss_pred ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhCCC
Q 003814 512 WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPP 568 (793)
Q Consensus 512 ~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~~~ 568 (793)
+.+|..|+||||+|+..++.+++++|+++|++++. +|.+|+||||+|+..++.
T Consensus 171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL----KNKEGETPLQCASLNSQV 223 (237)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----CCTTSCCHHHHSCTTCHH
T ss_pred CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc----cCCCCCCHHHHHHHHHHH
Confidence 88899999999999999999999999999999886 899999999999988753
No 23
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.7e-38 Score=335.13 Aligned_cols=264 Identities=15% Similarity=0.126 Sum_probs=219.5
Q ss_pred HHHHcCCHHHHHHHHhcCCccc-------cccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHH
Q 003814 247 LAALKGDWDFARNFFNLNPEAV-------CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 319 (793)
Q Consensus 247 ~Aa~~G~~~~v~~LL~~~~~~~-------~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa 319 (793)
.++..|+.+.++.++....... ....+..|.||||.||..|+.++|++|++ .|++++.+|..|.||||+|+
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~ 81 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE--RGADINYANVDGLTALHQAC 81 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHH--HCCCTTCBCTTCCBHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHH
Confidence 5677888888888886543211 11124567899999999999999999999 79999999999999999999
Q ss_pred HhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHh
Q 003814 320 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 399 (793)
Q Consensus 320 ~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~ 399 (793)
..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++.++.
T Consensus 82 ~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 82 IDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence 9999999999999999997 789999999999999999999999999999999999999999999999999999999887
Q ss_pred hCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCcccccc
Q 003814 400 HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGE 479 (793)
Q Consensus 400 ~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~ 479 (793)
......+..+..+.++++ +.+..++.. .......
T Consensus 161 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~l~~----~~~~~~~ 194 (299)
T 1s70_B 161 RQGVDIEAARKEEERIML------------------------------------------RDARQWLNS----GHINDVR 194 (299)
T ss_dssp HHTCCHHHHHHHHHHHHH------------------------------------------HHHHHHHHH----TCCCCCC
T ss_pred hcCCCchhhhhhhhhHHH------------------------------------------HHHHHHHhc----cCcchhh
Confidence 643322222222222221 111222222 2333344
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHH
Q 003814 480 LLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNML 559 (793)
Q Consensus 480 ~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpL 559 (793)
.+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++. +|..|+|||
T Consensus 195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l 269 (299)
T 1s70_B 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAF 269 (299)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCTT
T ss_pred hcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC----cCCCCCCHH
Confidence 567899999999999999999999999999 899999999999999999999999999999999986 999999999
Q ss_pred HHHhH
Q 003814 560 HLAGK 564 (793)
Q Consensus 560 HlAa~ 564 (793)
|+|++
T Consensus 270 ~~A~~ 274 (299)
T 1s70_B 270 DVADE 274 (299)
T ss_dssp TSCCS
T ss_pred HHHHH
Confidence 99965
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.8e-36 Score=310.64 Aligned_cols=228 Identities=17% Similarity=0.179 Sum_probs=202.5
Q ss_pred CcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCC
Q 003814 233 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN 312 (793)
Q Consensus 233 ~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~ 312 (793)
+++.+|.+|+||||+||..|+.+++++|++.+. +++.. +..|.||||+|+..|+.++|++|++ .|++++.+|..|.
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~ 78 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTC-SEDQRTPLMEAAENNHLEAVKYLIK--AGALVDPKDAEGS 78 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHTTCHHHHHHHHT--TTCCCCCCCTTSC
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CcCcc-CCCCCCHHHHHHHhCCHHHHHHHHh--CCCCCCCCCCCCC
Confidence 578889999999999999999999999998754 44444 8899999999999999999999999 8999999999999
Q ss_pred hHHHHHHHhCcHHHHHHHHhCC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCCh
Q 003814 313 TALCFAAVSGVTKIAEVMVNKN-RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY 391 (793)
Q Consensus 313 TpLh~Aa~~g~~~iv~~Ll~~g-~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~ 391 (793)
||||+|+..|+.+++++|+++| .+++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+.
T Consensus 79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 79 TCLHLAAKKGHYEVVQYLLSNGQMDVN-CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence 9999999999999999999999 4554 7899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHh
Q 003814 392 DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLL 471 (793)
Q Consensus 392 eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~ 471 (793)
+++++|++.++++ +.+|..
T Consensus 158 ~~~~~Ll~~g~~~-~~~~~~------------------------------------------------------------ 176 (237)
T 3b7b_A 158 DIAEILLAAKCDL-HAVNIH------------------------------------------------------------ 176 (237)
T ss_dssp HHHHHHHTTTCCT-TCCCTT------------------------------------------------------------
T ss_pred HHHHHHHHcCCCC-CCcCCC------------------------------------------------------------
Confidence 9999999988775 444444
Q ss_pred cCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 003814 472 LDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE 539 (793)
Q Consensus 472 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~ 539 (793)
|.||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+.+..+++
T Consensus 177 ------------g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 177 ------------GDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp ------------CCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45555666666778899999999999 78889999999999999998866655554
No 25
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=325.30 Aligned_cols=232 Identities=16% Similarity=0.191 Sum_probs=159.0
Q ss_pred ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCcccc------ccCCCCCchHHHHHHHhCcH-HHHHHHHhcCCCCccccc
Q 003814 235 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVC------VRISRNQDTALHIAAGARRT-LFVQELVNLMTPEDLALR 307 (793)
Q Consensus 235 ~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~------~~~d~~g~TpLh~Aa~~g~~-eiVk~LL~~~~gad~~~~ 307 (793)
..+|..+.+||+.||..|+.++|++||+.+..... ...+..|.||||.|+..++. ++++.|++ .|+++|.+
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~--~Gadvn~~ 82 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA--SGLGVNVT 82 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------CCCCTTCC
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHH--CCCCCCCc
Confidence 34667778899999999999999999976554321 12366788999998887765 47788888 78999999
Q ss_pred ccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHH
Q 003814 308 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID 387 (793)
Q Consensus 308 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~ 387 (793)
|.+|+||||+|+..|+.++|++|++.|++++ .++..|.||+|.|+..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS 161 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999998886 688889999999999999999999999999988888888888888888
Q ss_pred cCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHH
Q 003814 388 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE 467 (793)
Q Consensus 388 ~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~ 467 (793)
.|+.+++++|+++|+++ +.+|.
T Consensus 162 ~g~~~~v~~Ll~~gadv-n~~~~--------------------------------------------------------- 183 (269)
T 4b93_B 162 GGHHELVALLLQHGASI-NASNN--------------------------------------------------------- 183 (269)
T ss_dssp TTCGGGHHHHHHTTCCT-TCBCT---------------------------------------------------------
T ss_pred CCCHHHHHHHHHCCCCC-Ccccc---------------------------------------------------------
Confidence 88888888888877764 44443
Q ss_pred HHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCC-HHHHHHHHHcCCC
Q 003814 468 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQ-EKIFNLIYELGAH 543 (793)
Q Consensus 468 ~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~-~~iv~~Ll~~gad 543 (793)
.|.||||+|+..|+.++|++|+++|+| ++.+|..|+||||+|+++++ .++++.|.+.++.
T Consensus 184 ---------------~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 184 ---------------KGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS 244 (269)
T ss_dssp ---------------TSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred ---------------CCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence 455566666667778899999999999 88999999999999988775 3444444554444
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.5e-36 Score=320.65 Aligned_cols=233 Identities=16% Similarity=0.053 Sum_probs=147.1
Q ss_pred chhhHHhhcCCCC------------cCCcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHH
Q 003814 218 AQPAVSLSQPGAV------------SGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAG 285 (793)
Q Consensus 218 ~~~l~~l~~~G~~------------~~~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~ 285 (793)
.+|+|.|+..|+. ...++..+..|+||||+||..|+.+++++|++.+. +++.+ |..|.||||+|+.
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~-~~~g~tpL~~A~~ 87 (282)
T 1oy3_D 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA-GVLVA-ERGGHTALHLACR 87 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSSCC-CTTSCCHHHHHTT
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHH
Confidence 4566666666654 23488999999999999999999999999998754 45544 8899999999999
Q ss_pred hCcHHHHHHHHhcCCCCcccc-------------cccCCChHHHHHHHhCcHH-HHHHHHhCCCCCCCCCCCCCCCHHHH
Q 003814 286 ARRTLFVQELVNLMTPEDLAL-------------RNKVGNTALCFAAVSGVTK-IAEVMVNKNRELPSIRGNKGATPLCM 351 (793)
Q Consensus 286 ~g~~eiVk~LL~~~~gad~~~-------------~d~~G~TpLh~Aa~~g~~~-iv~~Ll~~g~~~~~~~~~~G~TpLh~ 351 (793)
.|+.+++++|++ .+++... ....+.++++.++..+... ....+...+.+++ .++..|.||||+
T Consensus 88 ~~~~~~v~~Ll~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~t~L~~ 164 (282)
T 1oy3_D 88 VRAHTCACVLLQ--PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHV 164 (282)
T ss_dssp TTCHHHHHHHSS--SCCSSCCCC-----------------------------------CCCGGGGTT-CCCTTSCCHHHH
T ss_pred cCCcchhHhhhc--cCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCC-CcCCCCcCHHHH
Confidence 999999999999 5655322 2234556666665554433 2333334445554 566777777777
Q ss_pred HHHcCCHHHHHHHHhcCCCCCccccc-CchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccc
Q 003814 352 AALLGHKEMIWYLYSVTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGS 430 (793)
Q Consensus 352 Aa~~g~~eiv~~Ll~~gad~n~~~~~-g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~ 430 (793)
|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+++ +.+|
T Consensus 165 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d--------------------- 222 (282)
T 1oy3_D 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARM--------------------- 222 (282)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC---------------------
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccc---------------------
Confidence 77777777777777777777766643 777777777777777777777666553 3444
Q ss_pred hhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCC
Q 003814 431 QLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL 510 (793)
Q Consensus 431 ~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~ 510 (793)
..|.||||+|+..|+.+++++|+++|++
T Consensus 223 ---------------------------------------------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~- 250 (282)
T 1oy3_D 223 ---------------------------------------------------YGGRTPLGSALLRPNPILARLLRAHGAP- 250 (282)
T ss_dssp ---------------------------------------------------TTSCCHHHHHHTSSCHHHHHHHHHTTCC-
T ss_pred ---------------------------------------------------cCCCCHHHHHHHcCCcHHHHHHHHcCCC-
Confidence 4455666666667788999999999999
Q ss_pred cccccCCCCCHHHHHHHcC
Q 003814 511 IWKVDDHSRSMFHIAVVHR 529 (793)
Q Consensus 511 ~~~~d~~G~T~Lh~A~~~g 529 (793)
++.+|..|.|||++|....
T Consensus 251 ~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 251 EPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp CCCCC--------------
T ss_pred cCcCCCcccccccccCCcc
Confidence 8899999999999998765
No 27
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.8e-36 Score=312.50 Aligned_cols=221 Identities=20% Similarity=0.215 Sum_probs=191.2
Q ss_pred CCCCCchHHHHHHHhCcHHHHHHHHhc--CCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHH
Q 003814 272 ISRNQDTALHIAAGARRTLFVQELVNL--MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL 349 (793)
Q Consensus 272 ~d~~g~TpLh~Aa~~g~~eiVk~LL~~--~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpL 349 (793)
+|.+|+||||+||..|+.++|++|++. ..+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.|||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l 83 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAA 83 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHH
Confidence 488999999999999999999999862 1578899999999999999999999999999999999886 6788999999
Q ss_pred HHHHHcCCHHHHHHHHhcCC----CCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCC
Q 003814 350 CMAALLGHKEMIWYLYSVTK----EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSA 425 (793)
Q Consensus 350 h~Aa~~g~~eiv~~Ll~~ga----d~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~ 425 (793)
|+|+..|+.+++++|+++++ +++..+..|.||||.|+..|+.+++++|++.++++ +..+
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~---------------- 146 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVD---------------- 146 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC----------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccc----------------
Confidence 99999999999999999987 77888888888888888888888888888887664 2222
Q ss_pred ccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHH
Q 003814 426 FASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ 505 (793)
Q Consensus 426 ~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~ 505 (793)
+..|.||||+|+..|+.+++++|++
T Consensus 147 -------------------------------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 147 -------------------------------------------------------IKSGRSPLIHAVENNSLSMVQLLLQ 171 (241)
T ss_dssp -------------------------------------------------------TTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------------------------------------ccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 0245677777777888999999999
Q ss_pred hCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhCCCCc
Q 003814 506 MYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR 570 (793)
Q Consensus 506 ~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~~~~~ 570 (793)
+|++ ++.+|..|+||||+|+..|+.+++++|+++|++++. +|..|+||||+|+..++.+.
T Consensus 172 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~tpl~~A~~~~~~~i 231 (241)
T 1k1a_A 172 HGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVIDI 231 (241)
T ss_dssp TTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCTTTTCSSHHHHHH
T ss_pred cCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC----cCCCCCCHHHHHHhcCcHHH
Confidence 9999 889999999999999999999999999999999986 99999999999998876543
No 28
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=305.91 Aligned_cols=231 Identities=19% Similarity=0.172 Sum_probs=184.4
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
|..|.||||.|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVE--AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 6677888888888888888888888 67888888888888888888888888888888888877766666688888888
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchh
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 432 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~ 432 (793)
+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++++++ +.++..|.||||+|+..++. .
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~------~ 156 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHS------V 156 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCS------S
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCCh------H
Confidence 8888888888888888888888888888888888888888888888887775 67778888888888865541 1
Q ss_pred hHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccC-CCChHHHHHHHcCCHHHHHHHHHhCCCCc
Q 003814 433 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLI 511 (793)
Q Consensus 433 ~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~ 511 (793)
++++.|++. +.+++..+. .|.||||+|+..|+.+++++|+++|++ +
T Consensus 157 ---------------------------~~~~~L~~~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~ 203 (240)
T 3eu9_A 157 ---------------------------DPTRLLLTF-----NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-V 203 (240)
T ss_dssp ---------------------------TTHHHHHHT-----TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-T
T ss_pred ---------------------------HHHHHHHhc-----CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-C
Confidence 223333332 555565565 788999999999999999999999999 8
Q ss_pred ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 003814 512 WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 545 (793)
Q Consensus 512 ~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~ 545 (793)
+.+|..|+||||+|+..|+.+++++|++++++..
T Consensus 204 ~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 204 DAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 8999999999999999999999999999998754
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-35 Score=304.19 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=174.5
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCC--Ccccc-cccCCChHHHH
Q 003814 241 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP--EDLAL-RNKVGNTALCF 317 (793)
Q Consensus 241 g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~g--ad~~~-~d~~G~TpLh~ 317 (793)
|+||||+||..|+.+++++|++.++...... |..|.||||+|+..|+.+++++|++ .| .+++. +|..|.||||+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLS--KMENVNLDDYPDDSGWTPFHI 78 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TCTTCCGGGCCCTTSCCHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHh--ccccccccccCCCCCCCHHHH
Confidence 6789999999999999999998776655443 8889999999999999999999999 56 66666 78889999999
Q ss_pred HHHhCcHHHHHHHHhCC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHH
Q 003814 318 AAVSGVTKIAEVMVNKN--RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVAL 395 (793)
Q Consensus 318 Aa~~g~~~iv~~Ll~~g--~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~ 395 (793)
|+..|+.+++++|+++| ++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus 79 A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 79 ACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp HHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999988 7765 67888999999999999999999999999998888888888888888888888888
Q ss_pred HHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCcc
Q 003814 396 DLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDS 475 (793)
Q Consensus 396 ~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~ 475 (793)
+|++.++..++.+|..
T Consensus 158 ~Ll~~g~~~~~~~d~~---------------------------------------------------------------- 173 (228)
T 2dzn_A 158 LLCGLGKSAVNWQDKQ---------------------------------------------------------------- 173 (228)
T ss_dssp HHHTTTCCCSCCCCTT----------------------------------------------------------------
T ss_pred HHHhcCcccccCcCCC----------------------------------------------------------------
Confidence 8888773222444443
Q ss_pred ccccccCCCChHHHHHHHcCCHHHHHHHH-HhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 003814 476 KIGELLRKPSRLLFTAVELGNVEFLMVLI-QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE 539 (793)
Q Consensus 476 ~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL-~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~ 539 (793)
|.||||+|+..|+.+++++|+ ++|++ ++.+|..|+||||+|+.. +++++|++
T Consensus 174 --------g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 174 --------GWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp --------SCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred --------CCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 445555555566677888888 77887 778888888888888654 45566654
No 30
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.8e-36 Score=307.65 Aligned_cols=215 Identities=16% Similarity=0.154 Sum_probs=191.7
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
+..+.||||.|+..|+.+.++.|++. .+..++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHh-chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCCCCCCHHHHH
Confidence 44678999999999999999999985 455678889999999999999999999999999999987 6889999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchh
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 432 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~ 432 (793)
+..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|++++++. +.+|
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~----------------------- 136 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKD----------------------- 136 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-----------------------
T ss_pred HHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcC-----------------------
Confidence 9999999999999999999999999999999999999999999999877664 3333
Q ss_pred hHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 003814 433 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW 512 (793)
Q Consensus 433 ~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~ 512 (793)
..|.||||.|+..|+.+++++|+++|++ ++
T Consensus 137 -------------------------------------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~ 166 (231)
T 3aji_A 137 -------------------------------------------------HYDATAMHRAAAKGNLKMVHILLFYKAS-TN 166 (231)
T ss_dssp -------------------------------------------------TTSCCHHHHHHHHTCHHHHHHHHHTTCC-SC
T ss_pred -------------------------------------------------CCCCcHHHHHHHcCCHHHHHHHHhcCCC-cc
Confidence 3456677777778889999999999999 88
Q ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhCC
Q 003814 513 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAP 567 (793)
Q Consensus 513 ~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~~ 567 (793)
.+|..|+||||+|+..++.+++++|+++|++++. +|..|+||||+|++.++
T Consensus 167 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~ 217 (231)
T 3aji_A 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI----ENKEEKTPLQVAKGGLG 217 (231)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHSCHHHH
T ss_pred ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhhHH
Confidence 9999999999999999999999999999999986 99999999999987664
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=320.89 Aligned_cols=215 Identities=18% Similarity=0.217 Sum_probs=161.3
Q ss_pred CCCCCchHHHHHHHhCcHHHHHHHHhcCCCCc--------ccccccCCChHHHHHHHhCcH-HHHHHHHhCCCCCCCCCC
Q 003814 272 ISRNQDTALHIAAGARRTLFVQELVNLMTPED--------LALRNKVGNTALCFAAVSGVT-KIAEVMVNKNRELPSIRG 342 (793)
Q Consensus 272 ~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad--------~~~~d~~G~TpLh~Aa~~g~~-~iv~~Ll~~g~~~~~~~~ 342 (793)
+|..+.+||+.||..|+.++|++||+ .+++ ++..|..|.||||.|+..++. +++++|+++|++++ .+|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~--~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~d 83 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLE--WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VTS 83 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHT--CC----------------------------------------CCCCTT-CCC
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHH--CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-CcC
Confidence 37778899999999999999999998 5553 566778889999999987765 47889999999987 788
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhC
Q 003814 343 NKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 422 (793)
Q Consensus 343 ~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~ 422 (793)
.+|.||||+|+..|+.++|++|++.|++++..+.+|.||+|.|+..++.++++.|++.++++ +.+|..|
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g---------- 152 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSG---------- 152 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTC----------
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCC----------
Confidence 89999999999999999999999999999999999999999999999999999998887764 4544444
Q ss_pred CCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHH
Q 003814 423 PSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMV 502 (793)
Q Consensus 423 g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~ 502 (793)
.||||+||..|+.++|++
T Consensus 153 --------------------------------------------------------------~TpL~~A~~~g~~~~v~~ 170 (269)
T 4b93_B 153 --------------------------------------------------------------NTPLIYACSGGHHELVAL 170 (269)
T ss_dssp --------------------------------------------------------------CCHHHHHHHTTCGGGHHH
T ss_pred --------------------------------------------------------------CCHHHHHHHCCCHHHHHH
Confidence 455555556667788999
Q ss_pred HHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhCC
Q 003814 503 LIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAP 567 (793)
Q Consensus 503 LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~~ 567 (793)
|+++|++ ++.+|..|+||||+|+..|+.++|++|+++|+|++. +|.+|+||||+|+++++
T Consensus 171 Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 171 LLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV----LNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCSGGGSCTTCH
T ss_pred HHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHhCCc
Confidence 9999999 899999999999999999999999999999999986 99999999999987764
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.8e-35 Score=302.49 Aligned_cols=210 Identities=19% Similarity=0.241 Sum_probs=175.9
Q ss_pred CchHHHHHHHhCcHHHHHHHHhcCCCCccc-ccccCCChHHHHHHHhCcHHHHHHHHhCC--CCCCCCCCCCCCCHHHHH
Q 003814 276 QDTALHIAAGARRTLFVQELVNLMTPEDLA-LRNKVGNTALCFAAVSGVTKIAEVMVNKN--RELPSIRGNKGATPLCMA 352 (793)
Q Consensus 276 g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~-~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g--~~~~~~~~~~G~TpLh~A 352 (793)
|+||||+||..|+.++|++|++ .+.++. .+|..|.||||+|+..|+.+++++|+++| ++++...+..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHH--HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHh--cCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 6789999999999999999988 455544 47888999999999999999999999988 555433778889999999
Q ss_pred HHcCCHHHHHHHHhcC--CCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccc
Q 003814 353 ALLGHKEMIWYLYSVT--KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGS 430 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~g--ad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~ 430 (793)
+..|+.+++++|+++| ++++..+..|.||||.|+..|+.+++++|+++|+++ +.+|.
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-------------------- 138 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDK-------------------- 138 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT--------------------
T ss_pred HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCC--------------------
Confidence 9999999999999888 777888888888888888888888888888877664 33333
Q ss_pred hhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhC-CC
Q 003814 431 QLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMY-PN 509 (793)
Q Consensus 431 ~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g-~d 509 (793)
.|.||||+|+..|+.+++++|+++| ++
T Consensus 139 ----------------------------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 166 (228)
T 2dzn_A 139 ----------------------------------------------------FNQIPLHRAASVGSLKLIELLCGLGKSA 166 (228)
T ss_dssp ----------------------------------------------------TSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred ----------------------------------------------------CCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 4556666666777889999999999 55
Q ss_pred CcccccCCCCCHHHHHHHcCCHHHHHHHH-HcCCChhhhhhcccCCCCcHHHHHhHh
Q 003814 510 LIWKVDDHSRSMFHIAVVHRQEKIFNLIY-ELGAHKDLIASYKDENNNNMLHLAGKL 565 (793)
Q Consensus 510 ~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll-~~gad~~~l~n~~D~~G~TpLHlAa~~ 565 (793)
++.+|..|+||||+|+..|+.+++++|+ +.|++++. +|.+|+||||+|++.
T Consensus 167 -~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~----~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 167 -VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVALNE 218 (228)
T ss_dssp -SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC----BCTTSCBGGGGCSST
T ss_pred -ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc----cCCCCCcHHHHHHHH
Confidence 8999999999999999999999999999 89999986 999999999999764
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=8.1e-36 Score=317.30 Aligned_cols=237 Identities=14% Similarity=0.072 Sum_probs=206.7
Q ss_pred cCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHH
Q 003814 251 KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 330 (793)
Q Consensus 251 ~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~L 330 (793)
..+.+.+..+|..+ .++. .|..|.||||+|+..|+.++|++|++ .|++++.+| |+||||+|+..|+.+++++|
T Consensus 9 ~~~~~~v~~lL~~~--~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~--g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 9 TWKSKQLKSFLSSK--DTFK-ADVHGHSASYYAIADNNVRLVCTLLN--AGALKNLLE--NEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GCCHHHHHHHHHST--TTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH--TTGGGSCCT--TCCHHHHHTTSSSCHHHHHH
T ss_pred hcCHHHHHHHHHhC--CCCc-cCCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCC--CCCHHHHHHHcCCHHHHHHH
Confidence 34445555555544 2444 48999999999999999999999999 799998884 89999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccC-chHHHHHHHcCChhHHHHHHhhCcccccccC
Q 003814 331 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR-IELLVAVIDAGLYDVALDLIQHHPQLAMARD 409 (793)
Q Consensus 331 l~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g-~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d 409 (793)
+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|++++++. .+
T Consensus 82 l~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~ 157 (285)
T 3kea_A 82 LFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FD 157 (285)
T ss_dssp HHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CC
T ss_pred HHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---cc
Confidence 99999987 689999999999999999999999999999999999999 79999999999999999999999875 23
Q ss_pred C-CCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChH-
Q 003814 410 G-NGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRL- 487 (793)
Q Consensus 410 ~-~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~- 487 (793)
. .|.||||+|+..|+ .+++++|+++ +++++.++..|.||
T Consensus 158 ~~~g~t~L~~A~~~g~----------------------------------~~~v~~Ll~~-----gad~n~~~~~g~t~~ 198 (285)
T 3kea_A 158 LAILLSCIHITIKNGH----------------------------------VDMMILLLDY-----MTSTNTNNSLLFIPD 198 (285)
T ss_dssp CSTHHHHHHHHHHTTC----------------------------------HHHHHHHHHH-----HHHTCTTCCCBCCTT
T ss_pred ccCCccHHHHHHHcCh----------------------------------HHHHHHHHHc-----CCCCCcccCCCCChH
Confidence 3 89999999999987 3778888877 55677788889997
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 003814 488 LFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 545 (793)
Q Consensus 488 Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~ 545 (793)
||+|+..|+.+++++|+++|++ ++.+| +.|+..|+.+++++|+++|++++
T Consensus 199 L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 199 IKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp HHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999 67766 46788999999999999998875
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.6e-35 Score=297.99 Aligned_cols=217 Identities=20% Similarity=0.224 Sum_probs=183.9
Q ss_pred CCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 003814 252 GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 331 (793)
Q Consensus 252 G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll 331 (793)
|+.+++++|++.+... +...|..|.||||+|+..|+.++|++|++ .|++++.+|..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEETTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCc-ccccCCCCCchHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 6778888888766543 33347889999999999999999999999 79999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCC
Q 003814 332 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGN 411 (793)
Q Consensus 332 ~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~ 411 (793)
++++.....++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++++++ +.+|.
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~- 156 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNN- 156 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-
Confidence 9988444478889999999999999999999999999999999989999999999999999999998887664 33333
Q ss_pred CCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHH
Q 003814 412 GETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTA 491 (793)
Q Consensus 412 G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~A 491 (793)
.|.||||+|
T Consensus 157 -----------------------------------------------------------------------~g~t~L~~A 165 (223)
T 2f8y_A 157 -----------------------------------------------------------------------REETPLFLA 165 (223)
T ss_dssp -----------------------------------------------------------------------TCCCHHHHH
T ss_pred -----------------------------------------------------------------------CCcCHHHHH
Confidence 455666667
Q ss_pred HHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 003814 492 VELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 545 (793)
Q Consensus 492 a~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~ 545 (793)
++.|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|+...
T Consensus 166 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 166 AREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 777888999999999999 88899999999999999999999999999998654
No 35
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-36 Score=329.55 Aligned_cols=259 Identities=12% Similarity=0.084 Sum_probs=175.8
Q ss_pred CCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccc-----------------cccCCChH
Q 003814 252 GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL-----------------RNKVGNTA 314 (793)
Q Consensus 252 G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~-----------------~d~~G~Tp 314 (793)
...+++++|++++ .+++.. +..|.|++| |+.++|+.|++ +|++++. +.....+.
T Consensus 30 ~~~dlv~~ll~~g-a~i~~~-~~~g~~~~~-----g~~~~v~~Ll~--~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (327)
T 1sw6_A 30 FTHDLTSDFLSSP-LKIMKA-LPSPVVNDN-----EQKMKLEAFLQ--RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQ 100 (327)
T ss_dssp CCTTCCCSTTTSS-CCCEEC-BCCCCCCCH-----HHHHHHHHHHH--HHHC----------------------------
T ss_pred hcCchHHHHhhCC-cccccC-CCCCCcccC-----chhHHHHHHHH--hccCCccccchHhhhcccccccccccCCccch
Confidence 3345566666543 334443 566666665 66666776666 4555443 11112233
Q ss_pred HHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCC---h
Q 003814 315 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL---Y 391 (793)
Q Consensus 315 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~---~ 391 (793)
+|.|+..+..+++++|++.|++++..+|..|.||||+|+..|+.++|++|+++|++++.++.+|.||||+|+..|+ .
T Consensus 101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~ 180 (327)
T 1sw6_A 101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS 180 (327)
T ss_dssp ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccH
Confidence 5777777778888888888888873378888888888888888888888888888888888888888888888887 6
Q ss_pred hHHHHHHhhCcccccccCCCCCCHHHHHHh----CCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHH
Q 003814 392 DVALDLIQHHPQLAMARDGNGETALHVLAR----KPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE 467 (793)
Q Consensus 392 eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~----~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~ 467 (793)
++++.|++.+...++.+|..|+||||+|+. .|+ .+ +++.|++
T Consensus 181 ~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~-------~~---------------------------~v~~Ll~ 226 (327)
T 1sw6_A 181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-------SA---------------------------AAKYYLD 226 (327)
T ss_dssp TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC-------HH---------------------------HHHHHHH
T ss_pred HHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc-------HH---------------------------HHHHHHH
Confidence 777777777644457788888888888887 554 23 3333333
Q ss_pred HHH---------------hcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHH
Q 003814 468 QVL---------------LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEK 532 (793)
Q Consensus 468 ~~l---------------~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~ 532 (793)
.+. ...+.+++.++..|.||||.|+. +++|+++ + ++.+|..|+||||+|+..|+.+
T Consensus 227 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~ 297 (327)
T 1sw6_A 227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNIS 297 (327)
T ss_dssp HHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHH
T ss_pred HHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHH
Confidence 221 22377888889999999999996 8999998 4 7788999999999999999999
Q ss_pred HHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhC
Q 003814 533 IFNLIYELGAHKDLIASYKDENNNNMLHLAGKLA 566 (793)
Q Consensus 533 iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~ 566 (793)
++++|+++|++++. +|.+|+||||+|++.|
T Consensus 298 ~v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 298 IVDALLDYGADPFI----ANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHHTTCCTTC----CCTTSCCGGGGTCC--
T ss_pred HHHHHHHcCCCCcc----cCCCCCCHHHHHHhcC
Confidence 99999999999986 9999999999998764
No 36
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=290.34 Aligned_cols=231 Identities=17% Similarity=0.140 Sum_probs=206.9
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCccccccc-CCC
Q 003814 234 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK-VGN 312 (793)
Q Consensus 234 ~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~-~G~ 312 (793)
++..|..|.||||.|+..|+.+++++|++.+. +++.. +..|.||||+|+..|+.++|++|++ .|.+++..+. .|.
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~ 77 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGY-DVRQP-DKENVTLLHWAAINNRIDLVKYYIS--KGAIVDQLGGDLNS 77 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCBTTTTB
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCC-CcCCC-CCCCCCHHHHHHHhCCHHHHHHHHH--cCCcchhhcCCcCC
Confidence 35567788999999999999999999998664 44444 8899999999999999999999999 7888876554 599
Q ss_pred hHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCC-h
Q 003814 313 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL-Y 391 (793)
Q Consensus 313 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~-~ 391 (793)
||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++ .
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~ 156 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS
T ss_pred ChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH
Confidence 99999999999999999999999987 789999999999999999999999999999999999999999999997766 8
Q ss_pred hHHHHHHhhCcccccccCC-CCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHH
Q 003814 392 DVALDLIQHHPQLAMARDG-NGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL 470 (793)
Q Consensus 392 eiv~~LL~~~~~~~~~~d~-~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l 470 (793)
+++++|++.++++ +..+. .|.||||+|+..|+ .+++++|+++
T Consensus 157 ~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~----------------------------------~~~v~~Ll~~-- 199 (240)
T 3eu9_A 157 DPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGN----------------------------------TTVISLLLEA-- 199 (240)
T ss_dssp TTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTC----------------------------------HHHHHHHHHH--
T ss_pred HHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCC----------------------------------HHHHHHHHHc--
Confidence 9999999999997 66665 99999999999987 3777888776
Q ss_pred hcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCC
Q 003814 471 LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN 509 (793)
Q Consensus 471 ~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d 509 (793)
+.+++..+..|.||||+|++.|+.+++++|++++++
T Consensus 200 ---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 200 ---GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp ---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred ---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 677888889999999999999999999999999887
No 37
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-34 Score=309.02 Aligned_cols=269 Identities=17% Similarity=0.181 Sum_probs=215.7
Q ss_pred HHHHhCcHHHHHHHHhcCCCCccc---------ccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 282 IAAGARRTLFVQELVNLMTPEDLA---------LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 282 ~Aa~~g~~eiVk~LL~~~~gad~~---------~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
.++..++.+.++.++. ...++. ..+..|.||||.|+..|+.++|++|+++|++++ ..|..|.||||+|
T Consensus 4 ~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 80 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIG--SETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQA 80 (299)
T ss_dssp HHHHHHHHHHHHHHHH--TTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHH
T ss_pred hHHHHHHHHHHHHHHc--cccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence 5778888888888887 333322 234568899999999999999999999999987 7899999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchh
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 432 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~ 432 (793)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++++++ +..|.+|.||||+|+..++ .
T Consensus 81 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-------~ 152 (299)
T 1s70_B 81 CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAM-------E 152 (299)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHH-------H
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcch-------H
Confidence 9999999999999999999999999999999999999999999999999986 8889999999999987654 2
Q ss_pred hHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 003814 433 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW 512 (793)
Q Consensus 433 ~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~ 512 (793)
++++.++.. .+.+++..+..+.++++ ..++.++..+.....
T Consensus 153 ---------------------------~~~~~ll~~----~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~ 193 (299)
T 1s70_B 153 ---------------------------ELLQNEVNR----QGVDIEAARKEEERIML--------RDARQWLNSGHINDV 193 (299)
T ss_dssp ---------------------------HHHHHHHHH----HTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCC
T ss_pred ---------------------------HHHHHHHhh----cCCCchhhhhhhhhHHH--------HHHHHHHhccCcchh
Confidence 333333332 12222222222222232 345667777777677
Q ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhCCCCcccccCCchhHhHHHhhhHHHHH
Q 003814 513 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIE 592 (793)
Q Consensus 513 ~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~~~~~l~l~~Ga~~~~~~~l~~~~~v~ 592 (793)
..+..|.||||+|+..|+.+++++|+++|++++. +|.+|+||||+|+..|+.+. ++
T Consensus 194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~----~d~~g~tpL~~A~~~~~~~~--------------------v~ 249 (299)
T 1s70_B 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI----KDYDGWTPLHAAAHWGKEEA--------------------CR 249 (299)
T ss_dssp CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC----CCTTCCCHHHHHHHTTCHHH--------------------HH
T ss_pred hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC----cCCCCCcHHHHHHhcCCHHH--------------------HH
Confidence 7889999999999999999999999999999986 99999999999999987542 33
Q ss_pred Hhhc-cchhHhhhcCCCCchhhhhhhhhhhhhh
Q 003814 593 KVVQ-PSYREAKNSEGRTPHILFSEEHRRLVRE 624 (793)
Q Consensus 593 ~ll~-~~~~~~~n~~G~Tpl~la~e~~~~l~~e 624 (793)
.++. +.+++.+|..|+||+++|.++..+.+++
T Consensus 250 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~ 282 (299)
T 1s70_B 250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282 (299)
T ss_dssp HHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 3333 4566899999999999998876554433
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.4e-34 Score=303.93 Aligned_cols=210 Identities=12% Similarity=0.145 Sum_probs=186.0
Q ss_pred cHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003814 288 RTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 367 (793)
Q Consensus 288 ~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~ 367 (793)
..+++++|.+ + +++.+|..|.||||+|+..|+.++|++|+++|++++. . +|.||||+|+..|+.+++++|+++
T Consensus 12 ~~~v~~lL~~---~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~--~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 12 SKQLKSFLSS---K-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHHHHHS---T-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-C--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHHHh---C-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-C--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence 3455555554 2 6899999999999999999999999999999999873 4 599999999999999999999999
Q ss_pred CCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCC-CCHHHHHHhCCCCccccchhhHHHHhhhcCCCcc
Q 003814 368 TKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNG-ETALHVLARKPSAFASGSQLGFWRRCIYSVPGMR 446 (793)
Q Consensus 368 gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G-~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~ 446 (793)
|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..| .||||+|+..|+
T Consensus 85 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~---------------------- 141 (285)
T 3kea_A 85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLND---------------------- 141 (285)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTC----------------------
T ss_pred CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCC----------------------
Confidence 9999999999999999999999999999999999996 8899999 899999999987
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCH-HHHH
Q 003814 447 AILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSM-FHIA 525 (793)
Q Consensus 447 ~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~-Lh~A 525 (793)
.+++++|++++ .+... ...|.||||+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|
T Consensus 142 ------------~~~v~~Ll~~g-----~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A 202 (285)
T 3kea_A 142 ------------VSIVSYFLSEI-----PSTFD-LAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLA 202 (285)
T ss_dssp ------------HHHHHHHHTTS-----CTTCC-CSTHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHH
T ss_pred ------------HHHHHHHHhCC-----Ccccc-ccCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHH
Confidence 35666665543 22211 12789999999999999999999999999 89999999998 9999
Q ss_pred HHcCCHHHHHHHHHcCCChhh
Q 003814 526 VVHRQEKIFNLIYELGAHKDL 546 (793)
Q Consensus 526 ~~~g~~~iv~~Ll~~gad~~~ 546 (793)
+..|+.+++++|+++|++++.
T Consensus 203 ~~~~~~~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 203 IDNKDIEMLQALFKYDINIYS 223 (285)
T ss_dssp HHHTCHHHHHHHTTSCBCSTT
T ss_pred HHcCCHHHHHHHHHcCCCCCC
Confidence 999999999999999999986
No 39
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.3e-33 Score=287.91 Aligned_cols=202 Identities=18% Similarity=0.203 Sum_probs=146.2
Q ss_pred CcHHHHHHHHhcCCCCccccc-ccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003814 287 RRTLFVQELVNLMTPEDLALR-NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY 365 (793)
Q Consensus 287 g~~eiVk~LL~~~~gad~~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll 365 (793)
|+.+++++|++ .|++++.. |..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEE--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHH--cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 45556666666 55555543 5566666666666666666666666666654 45666666666666666666666666
Q ss_pred hcCC-CCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCC
Q 003814 366 SVTK-EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPG 444 (793)
Q Consensus 366 ~~ga-d~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~ 444 (793)
++++ +++..+..|.||||.|+..|+.+++++|++++++
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------------------------------- 117 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----------------------------------------- 117 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----------------------------------------
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-----------------------------------------
Confidence 6655 5555556666666666666666666666655544
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHH
Q 003814 445 MRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHI 524 (793)
Q Consensus 445 ~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~ 524 (793)
++..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus 118 --------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 164 (223)
T 2f8y_A 118 --------------------------------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFL 164 (223)
T ss_dssp --------------------------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred --------------------------------CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHH
Confidence 334445667777778888889999999999999 88999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHhCCCC
Q 003814 525 AVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD 569 (793)
Q Consensus 525 A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~~~~~ 569 (793)
|+..|+.+++++|+++|++++. +|..|+||||+|++.++.+
T Consensus 165 A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~~~ 205 (223)
T 2f8y_A 165 AAREGSYETAKVLLDHFANRDI----TDHMDRLPRDIAQERMHHD 205 (223)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHcCCCCcc----ccccCCCHHHHHHHhcchH
Confidence 9999999999999999999986 9999999999999998755
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.3e-32 Score=282.29 Aligned_cols=197 Identities=20% Similarity=0.201 Sum_probs=132.2
Q ss_pred CCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCC----CCCCCCCCCHHH
Q 003814 275 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELP----SIRGNKGATPLC 350 (793)
Q Consensus 275 ~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~----~~~~~~G~TpLh 350 (793)
.|+||||+|+..|+.++|++|++. .|++++.+|..|+||||+|+..|+.+++++|+++|+++. ..+|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 467777777777777777777772 377777777777777777777777777777777776642 245667777777
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCcccc-------------cCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHH
Q 003814 351 MAALLGHKEMIWYLYSVTKEEDLKEE-------------DRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALH 417 (793)
Q Consensus 351 ~Aa~~g~~eiv~~Ll~~gad~n~~~~-------------~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh 417 (793)
+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|+++ +.+|.+|+||||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~ 159 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLH 159 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence 77777777777777777777776654 3445555555555555555555444443 344444444444
Q ss_pred HHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCH
Q 003814 418 VLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNV 497 (793)
Q Consensus 418 ~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~ 497 (793)
+|+..|+.
T Consensus 160 ------------------------------------------------------------------------~A~~~~~~ 167 (232)
T 2rfa_A 160 ------------------------------------------------------------------------ILILQPNK 167 (232)
T ss_dssp ------------------------------------------------------------------------HHHTCSCH
T ss_pred ------------------------------------------------------------------------HHHHcCCh
Confidence 44444444
Q ss_pred HHH----HHHHHhCCCCc-----ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 003814 498 EFL----MVLIQMYPNLI-----WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 545 (793)
Q Consensus 498 eiv----~~LL~~g~d~~-----~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~ 545 (793)
+++ ++|+++|++.. +.+|..|+||||+|+..|+.+++++|+++|.+..
T Consensus 168 ~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 168 TFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp HHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 444 77777777632 5778888888888888888888888888876543
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=5.7e-34 Score=309.21 Aligned_cols=249 Identities=12% Similarity=0.053 Sum_probs=196.5
Q ss_pred hHHhhcCCCCcCCcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccc------------c---CCCCCchHHHHHHH
Q 003814 221 AVSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCV------------R---ISRNQDTALHIAAG 285 (793)
Q Consensus 221 l~~l~~~G~~~~~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~------------~---~d~~g~TpLh~Aa~ 285 (793)
+.++..+|+ +++..+..|.|+++ |+.++++.|++++...... + ......+.+|.|+.
T Consensus 35 v~~ll~~ga---~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~ 106 (327)
T 1sw6_A 35 TSDFLSSPL---KIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFD 106 (327)
T ss_dssp CCSTTTSSC---CCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHH
T ss_pred HHHHhhCCc---ccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHH
Confidence 334667777 56777788999988 9999999999875331110 0 01112334688999
Q ss_pred hCcHHHHHHHHhcCCCCcccc-cccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCC---HHHH
Q 003814 286 ARRTLFVQELVNLMTPEDLAL-RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH---KEMI 361 (793)
Q Consensus 286 ~g~~eiVk~LL~~~~gad~~~-~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~---~eiv 361 (793)
.+..++++.|++ .|++++. +|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+ .+++
T Consensus 107 ~~~~~~~~~l~~--~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~ 183 (327)
T 1sw6_A 107 SLLQEVNDAFPN--TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTF 183 (327)
T ss_dssp HHHHHHHHHCTT--SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCH
T ss_pred hhHHHHHHHHHh--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHH
Confidence 999999999999 8999999 89999999999999999999999999999997 899999999999999999 7888
Q ss_pred HHHHhcC-CCCCcccccCchHHHHHHH----cCChhHHHHHHhh--------------------CcccccccCCCCCCHH
Q 003814 362 WYLYSVT-KEEDLKEEDRIELLVAVID----AGLYDVALDLIQH--------------------HPQLAMARDGNGETAL 416 (793)
Q Consensus 362 ~~Ll~~g-ad~n~~~~~g~t~Lh~A~~----~g~~eiv~~LL~~--------------------~~~~~~~~d~~G~TpL 416 (793)
+.|++.+ ++++.++..|.||||+|+. .|+.++++.|++. ++++ +.+|..|+|||
T Consensus 184 ~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L 262 (327)
T 1sw6_A 184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSI 262 (327)
T ss_dssp HHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHH
T ss_pred HHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChh
Confidence 8888887 7899999999999999999 8999999999987 4443 67788888888
Q ss_pred HHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCC
Q 003814 417 HVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN 496 (793)
Q Consensus 417 h~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~ 496 (793)
|.|+. ++.|++. +++.+|..|+||||+|++.|+
T Consensus 263 ~~a~~----------------------------------------~~~Ll~~-------~~n~~d~~G~TpLh~A~~~g~ 295 (327)
T 1sw6_A 263 LENLD----------------------------------------LKWIIAN-------MLNAQDSNGDTCLNIAARLGN 295 (327)
T ss_dssp HHHCS----------------------------------------HHHHHHH-------TTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHHH----------------------------------------HHHHHHh-------CCCCCCCCCCCHHHHHHHcCC
Confidence 88763 3445544 477788999999999999999
Q ss_pred HHHHHHHHHhCCCCcccccCCCCCHHHHHHHcC
Q 003814 497 VEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR 529 (793)
Q Consensus 497 ~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g 529 (793)
.++|++|+++|++ ++.+|..|+||||+|+++|
T Consensus 296 ~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 296 ISIVDALLDYGAD-PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHHHHTTCC-TTCCCTTSCCGGGGTCC--
T ss_pred HHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcC
Confidence 9999999999999 8999999999999998764
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.3e-33 Score=290.86 Aligned_cols=163 Identities=20% Similarity=0.178 Sum_probs=89.3
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCc---cccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCC
Q 003814 236 RNCFTSYAPLHLAALKGDWDFARNFFNLNPE---AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN 312 (793)
Q Consensus 236 ~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~---~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~ 312 (793)
..|.+|+||||+|+..|+.+++++|++.... .++.. |..|.||||+|+..|+.++|++|++ .|++++.+|..|.
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~ 79 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLG--AGCDPELRDFRGN 79 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCS--CCCCSCCCCTTCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCC
Confidence 3455666666666666666666666654432 23332 5566666666666666666666666 5666666666666
Q ss_pred hHHHHHHHhCcHHHHHHHHhCCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccc-cCchHHHHHH
Q 003814 313 TALCFAAVSGVTKIAEVMVNKNREL-----PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEE-DRIELLVAVI 386 (793)
Q Consensus 313 TpLh~Aa~~g~~~iv~~Ll~~g~~~-----~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~-~g~t~Lh~A~ 386 (793)
||||+|+..|+.+++++|+++|++. ....+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~ 159 (236)
T 1ikn_D 80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159 (236)
T ss_dssp CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence 6666666666666666666666432 123455566666666666666666666666655554443 4444444444
Q ss_pred HcCChhHHHHHHhhC
Q 003814 387 DAGLYDVALDLIQHH 401 (793)
Q Consensus 387 ~~g~~eiv~~LL~~~ 401 (793)
..|+.+++++|+++|
T Consensus 160 ~~~~~~~v~~Ll~~g 174 (236)
T 1ikn_D 160 DLQNPDLVSLLLKCG 174 (236)
T ss_dssp HTTCHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHcC
Confidence 444444444444333
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.7e-32 Score=277.63 Aligned_cols=181 Identities=20% Similarity=0.203 Sum_probs=167.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcc-----cccccCCChH
Q 003814 240 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL-----ALRNKVGNTA 314 (793)
Q Consensus 240 ~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~-----~~~d~~G~Tp 314 (793)
.|+||||+|+..|+.+++++|++..+.+++.+ |..|+||||+|+..|+.++|++|++ .|+++ +.+|..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HCGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCchhccccccccCCCCcCH
Confidence 47899999999999999999998867677665 8999999999999999999999999 68876 6778899999
Q ss_pred HHHHHHhCcHHHHHHHHhCCCCCCCCCCC-------------CCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchH
Q 003814 315 LCFAAVSGVTKIAEVMVNKNRELPSIRGN-------------KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIEL 381 (793)
Q Consensus 315 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~-------------~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~ 381 (793)
||+|+..|+.+++++|+++|++++ .++. .|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVS-ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCC-cccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 999999999999999999999987 4443 79999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHH----HHHHhhCcccc-----cccCCCCCCHHHHHHhCCC
Q 003814 382 LVAVIDAGLYDVA----LDLIQHHPQLA-----MARDGNGETALHVLARKPS 424 (793)
Q Consensus 382 Lh~A~~~g~~eiv----~~LL~~~~~~~-----~~~d~~G~TpLh~A~~~g~ 424 (793)
||+|+..|+.+++ ++|++.+++.. +.+|..|+||||+|+..|+
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~ 209 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence 9999999999988 99999998753 5889999999999999987
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.3e-33 Score=287.93 Aligned_cols=217 Identities=16% Similarity=0.197 Sum_probs=167.6
Q ss_pred CCCCCchHHHHHHHhCcHHHHHHHHhcCC--CCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHH
Q 003814 272 ISRNQDTALHIAAGARRTLFVQELVNLMT--PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL 349 (793)
Q Consensus 272 ~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~--gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpL 349 (793)
+|.+|.||||+|+..|+.+++++|++... +++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.|||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L 82 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPL 82 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHH
Confidence 47888899999999999888888887311 23688888888899999999899999999998888886 6788888999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCC------CcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCC
Q 003814 350 CMAALLGHKEMIWYLYSVTKEE------DLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 423 (793)
Q Consensus 350 h~Aa~~g~~eiv~~Ll~~gad~------n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g 423 (793)
|+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------- 142 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-------------------- 142 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC--------------------
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------
Confidence 9999888888888888888763 33444455555555555555555555555444
Q ss_pred CCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccC-CCChHHHHHHHcCCHHHHHH
Q 003814 424 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMV 502 (793)
Q Consensus 424 ~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~eiv~~ 502 (793)
++..+. .|.||||+|+..|+.+++++
T Consensus 143 -----------------------------------------------------~~~~~~~~g~tpL~~A~~~~~~~~v~~ 169 (236)
T 1ikn_D 143 -----------------------------------------------------VNAQEPCNGRTALHLAVDLQNPDLVSL 169 (236)
T ss_dssp -----------------------------------------------------TTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred -----------------------------------------------------CCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 334444 67777888888888999999
Q ss_pred HHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcHHHHHhHh
Q 003814 503 LIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKL 565 (793)
Q Consensus 503 LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~TpLHlAa~~ 565 (793)
|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++... ..++.+|.||.+.+...
T Consensus 170 Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 170 LLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ--MLPESEDEESYDTESEF 229 (236)
T ss_dssp HHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS--SCCCCCTTTCCCCC---
T ss_pred HHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh--cCCccchHHHHhhhccc
Confidence 9999999 889999999999999999999999999999998763 34899999998776543
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1e-31 Score=269.22 Aligned_cols=198 Identities=18% Similarity=0.180 Sum_probs=157.5
Q ss_pred CCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHH
Q 003814 274 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 353 (793)
Q Consensus 274 ~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa 353 (793)
..+.||||.|+..|+.+.|+.|++. .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAG 80 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence 4677888888888888888888873 344788888888888888888888888888888888876 67778888888888
Q ss_pred HcCCHHHHHHHH-hcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchh
Q 003814 354 LLGHKEMIWYLY-SVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 432 (793)
Q Consensus 354 ~~g~~eiv~~Ll-~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~ 432 (793)
..|+.+++++|+ ..+++++..+..|.||||.|+..|+.+++++|+++++..++.+|..|+||||+|+..++.
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~------- 153 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG------- 153 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC-------
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc-------
Confidence 888888888888 555677888888888888888888888888888887433477777888888888766531
Q ss_pred hHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 003814 433 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW 512 (793)
Q Consensus 433 ~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~ 512 (793)
..++.+++++|+++|++ ++
T Consensus 154 ------------------------------------------------------------~~~~~~~v~~Ll~~ga~-~~ 172 (201)
T 3hra_A 154 ------------------------------------------------------------NQLYQDIVKLLMENGAD-QS 172 (201)
T ss_dssp ------------------------------------------------------------SHHHHHHHHHHHHTTCC-TT
T ss_pred ------------------------------------------------------------hhhHHHHHHHHHHCCCC-CC
Confidence 01237889999999999 78
Q ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 003814 513 KVDDHSRSMFHIAVVHRQEKIFNLIYELG 541 (793)
Q Consensus 513 ~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~g 541 (793)
.+|..|+||||+|+..|+.+++++|+++|
T Consensus 173 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 173 IKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred ccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 88999999999999999999999999876
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.1e-32 Score=285.49 Aligned_cols=201 Identities=18% Similarity=0.144 Sum_probs=147.1
Q ss_pred CchHHHHHHHhCcHH----HHHHHHhcCCCCcccc----cccCCChHHHHHHHh---CcHHHHHHHHhCCCCCCCC----
Q 003814 276 QDTALHIAAGARRTL----FVQELVNLMTPEDLAL----RNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSI---- 340 (793)
Q Consensus 276 g~TpLh~Aa~~g~~e----iVk~LL~~~~gad~~~----~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~---- 340 (793)
|+||||.||..|+.+ ++++|++ .|++++. +|..|+||||+|+.. |+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~--~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRW--NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHH--cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 677777777777775 4456666 5777776 677777777777777 7777777777777665421
Q ss_pred ------CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccc-------------CchHHHHHHHcCChhHHHHHHh--
Q 003814 341 ------RGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED-------------RIELLVAVIDAGLYDVALDLIQ-- 399 (793)
Q Consensus 341 ------~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~-------------g~t~Lh~A~~~g~~eiv~~LL~-- 399 (793)
+|..|.||||+|+..|+.+++++|+++|++++.++.. |.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 2466888888888888888888888888888887765 7777777777777777777777
Q ss_pred -hCcccccccCCCCCCHHHHHHh--CCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccc
Q 003814 400 -HHPQLAMARDGNGETALHVLAR--KPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSK 476 (793)
Q Consensus 400 -~~~~~~~~~d~~G~TpLh~A~~--~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~ 476 (793)
.|+++ +.+|.+|+||||+|+. .++. +..+
T Consensus 160 ~~ga~~-n~~d~~g~TpLh~A~~~~~~~~----------------------------------~~~~------------- 191 (256)
T 2etb_A 160 HQPASL-EATDSLGNTVLHALVMIADNSP----------------------------------ENSA------------- 191 (256)
T ss_dssp SCCCCT-TCCCTTSCCHHHHHHHHCCSCH----------------------------------HHHH-------------
T ss_pred ccCCCc-CccCCCCCCHHHHHHHcccCCc----------------------------------hhhH-------------
Confidence 66664 6677777777777776 3220 1000
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCc-------ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 003814 477 IGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI-------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 545 (793)
Q Consensus 477 ~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~-------~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~ 545 (793)
+ ..+++++|+++|++ + +.+|..|+||||+|+..|+.+++++|+++|.+..
T Consensus 192 -----------~-------~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 192 -----------L-------VIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp -----------H-------HHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------H-------HHHHHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 0 03478888888887 5 7888899999999999999999999998887654
No 47
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=6.1e-31 Score=263.49 Aligned_cols=181 Identities=19% Similarity=0.228 Sum_probs=169.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHH
Q 003814 239 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA 318 (793)
Q Consensus 239 ~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~A 318 (793)
..+.||||.|+..|+.+.++.|++.++.+++.. |..|.||||+|+..|+.++|++|++ .|++++.+|..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~l~~A 79 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALID--RGADINLQNSISDSPYLYA 79 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHH
Confidence 356799999999999999999999887677665 8999999999999999999999999 8999999999999999999
Q ss_pred HHhCcHHHHHHHHh-CCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCcccccCchHHHHHHHcCC-----h
Q 003814 319 AVSGVTKIAEVMVN-KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT-KEEDLKEEDRIELLVAVIDAGL-----Y 391 (793)
Q Consensus 319 a~~g~~~iv~~Ll~-~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~g-ad~n~~~~~g~t~Lh~A~~~g~-----~ 391 (793)
+..|+.+++++|++ .+++++ ..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++ .
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLN-KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTT-CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred HHcCCHHHHHHHHhccCcccc-cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence 99999999999995 455665 78999999999999999999999999999 9999999999999999999998 9
Q ss_pred hHHHHHHhhCcccccccCCCCCCHHHHHHhCCC
Q 003814 392 DVALDLIQHHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 392 eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
+++++|+++|+++ +.+|.+|+||||+|+..|+
T Consensus 159 ~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 159 DIVKLLMENGADQ-SIKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCC
Confidence 9999999999996 8899999999999999987
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=7.2e-32 Score=284.41 Aligned_cols=219 Identities=13% Similarity=0.120 Sum_probs=134.4
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcC--CCCccc----ccccCCChHHHHHHHh---CcHHHHHHHHhCCCCCC-----
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLM--TPEDLA----LRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELP----- 338 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~--~gad~~----~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~----- 338 (793)
|..|+||||+||+.|+.++|+.|++.. .+++++ .+|..|+||||+|+.. |+.++|++|+++|++..
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 444555555555555555554444310 223332 2344555555555544 55555555555543311
Q ss_pred -----CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------cCchHHHHHHHcCChhHHHHHHh
Q 003814 339 -----SIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEE--------------DRIELLVAVIDAGLYDVALDLIQ 399 (793)
Q Consensus 339 -----~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~--------------~g~t~Lh~A~~~g~~eiv~~LL~ 399 (793)
...|..|.||||+|+..|+.++|++|+++|++++.++. .|.||||+|+..|+.+++++|++
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 12456788888888888888888888888888887776 68888888888888888888888
Q ss_pred ---hCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccc
Q 003814 400 ---HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSK 476 (793)
Q Consensus 400 ---~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~ 476 (793)
.|+++ +.+|.+|+||||+|+..|+... +..
T Consensus 170 ~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~--------------------------------~~~-------------- 202 (273)
T 2pnn_A 170 NSWQPADI-SARDSVGNTVLHALVEVADNTV--------------------------------DNT-------------- 202 (273)
T ss_dssp CSSCCCCT-TCCCTTSCCHHHHHHHHCCSCH--------------------------------HHH--------------
T ss_pred cccCCCCc-eeeCCCCCcHHHHHHHccCcch--------------------------------hHH--------------
Confidence 67775 7788888888888887654100 000
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCc------ccccCCCCCHHHHHHHcCCHHHHHHHHHcCC-Chhhhhh
Q 003814 477 IGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGA-HKDLIAS 549 (793)
Q Consensus 477 ~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~------~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga-d~~~l~n 549 (793)
.+ ..+++++|+++|+++. +.+|..|+||||+|+..|+.+++++|+++|+ |+..
T Consensus 203 ----------~~-------~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~--- 262 (273)
T 2pnn_A 203 ----------KF-------VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC--- 262 (273)
T ss_dssp ----------HH-------HHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------
T ss_pred ----------HH-------HHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh---
Confidence 00 0467777777777722 3578888888888888888888888888888 6653
Q ss_pred cccCCCCcHH
Q 003814 550 YKDENNNNML 559 (793)
Q Consensus 550 ~~D~~G~TpL 559 (793)
....+.+|-
T Consensus 263 -~~~~~~~~~ 271 (273)
T 2pnn_A 263 -RHAAAHHHH 271 (273)
T ss_dssp ----------
T ss_pred -hhhhhhhcc
Confidence 555555553
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=2.8e-31 Score=279.93 Aligned_cols=221 Identities=13% Similarity=0.096 Sum_probs=167.1
Q ss_pred CcccCCCCCchHHHHHHHcCCHHHHHHHHhc---CCcccc---ccCCCCCchHHHHHHHh---CcHHHHHHHHhcCCCCc
Q 003814 233 GVERNCFTSYAPLHLAALKGDWDFARNFFNL---NPEAVC---VRISRNQDTALHIAAGA---RRTLFVQELVNLMTPED 303 (793)
Q Consensus 233 ~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~---~~~~~~---~~~d~~g~TpLh~Aa~~---g~~eiVk~LL~~~~gad 303 (793)
..+..|..|+||||+||..|+.++|+.|++. .+..++ ...|..|+||||+|+.. |+.++|++|++ .|++
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~--~ga~ 82 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD--VARK 82 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH--HHHH
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH--hhcc
Confidence 3456788899999999999999999999873 222222 13478999999999987 99999999999 5654
Q ss_pred -------ccc----cccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCC--------------CCCCHHHHHHHcCCH
Q 003814 304 -------LAL----RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN--------------KGATPLCMAALLGHK 358 (793)
Q Consensus 304 -------~~~----~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~--------------~G~TpLh~Aa~~g~~ 358 (793)
++. +|..|.||||+|+..|+.++|++|+++|++++ .++. .|.||||+|+..|+.
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 161 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCCCHHHHHHHcCCH
Confidence 232 67799999999999999999999999999997 5555 799999999999999
Q ss_pred HHHHHHHh---cCCCCCcccccCchHHHHHHHcCC---------hhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCc
Q 003814 359 EMIWYLYS---VTKEEDLKEEDRIELLVAVIDAGL---------YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAF 426 (793)
Q Consensus 359 eiv~~Ll~---~gad~n~~~~~g~t~Lh~A~~~g~---------~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~ 426 (793)
+++++|++ +|++++.+|.+|+||||+|+..|+ .+++++|+++|+++ +..
T Consensus 162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~-n~~------------------ 222 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL-HPT------------------ 222 (273)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH-CTT------------------
T ss_pred HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc-ccc------------------
Confidence 99999999 999999999999999999999988 68888888877664 210
Q ss_pred cccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 003814 427 ASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM 506 (793)
Q Consensus 427 ~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~ 506 (793)
...++.+|..|.||||+|++.|+.+++++|+++
T Consensus 223 -----------------------------------------------~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 223 -----------------------------------------------LKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255 (273)
T ss_dssp -----------------------------------------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------------------------cccccccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence 000123455677777777788888888888888
Q ss_pred CCCCcccccCCCCCHH
Q 003814 507 YPNLIWKVDDHSRSMF 522 (793)
Q Consensus 507 g~d~~~~~d~~G~T~L 522 (793)
|+.........+.+|-
T Consensus 256 ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 256 EIHEPECRHAAAHHHH 271 (273)
T ss_dssp HTC-------------
T ss_pred CCCCchhhhhhhhhcc
Confidence 8843655555555553
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.3e-30 Score=252.89 Aligned_cols=157 Identities=25% Similarity=0.286 Sum_probs=146.8
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhC
Q 003814 243 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG 322 (793)
Q Consensus 243 T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g 322 (793)
++|+.||+.|+.++|+.||+.+. +++.+ |.+|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Ga-dvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~--~gad~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGA-DVNAS-DSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCC-CCCCc-CCCCCCHHHHHHHcCCHHHHHHHHh--cccchhhhccCCCCHHHHHHHcC
Confidence 58999999999999999998654 55655 9999999999999999999999999 89999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCc
Q 003814 323 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 402 (793)
Q Consensus 323 ~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~ 402 (793)
+.++|++|+++|++++ .+|.+|+||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|+
T Consensus 82 ~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 82 HKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred CHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 9999999999999997 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 003814 403 QL 404 (793)
Q Consensus 403 ~~ 404 (793)
++
T Consensus 161 ~i 162 (169)
T 4gpm_A 161 WL 162 (169)
T ss_dssp --
T ss_pred Cc
Confidence 86
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=7.5e-31 Score=273.79 Aligned_cols=181 Identities=16% Similarity=0.133 Sum_probs=160.3
Q ss_pred CCchHHHHHHHcCCHH----HHHHHHhcCCccccc---cCCCCCchHHHHHHHh---CcHHHHHHHHhcCCCCcccc---
Q 003814 240 TSYAPLHLAALKGDWD----FARNFFNLNPEAVCV---RISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLAL--- 306 (793)
Q Consensus 240 ~g~T~Lh~Aa~~G~~~----~v~~LL~~~~~~~~~---~~d~~g~TpLh~Aa~~---g~~eiVk~LL~~~~gad~~~--- 306 (793)
.|+||||.||..|+.+ ++++|++.+. +++. ..|..|+||||+|+.. |+.++|++|++ .|++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~-~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~~ 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK-YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ--IDKDSGNPKP 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH--HHHHTTCSSC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCC-CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh--cCCcccchhh
Confidence 3789999999999998 4455555544 4444 2389999999999999 99999999999 6777653
Q ss_pred --------cccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCC-------------CCCHHHHHHHcCCHHHHHHHH
Q 003814 307 --------RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK-------------GATPLCMAALLGHKEMIWYLY 365 (793)
Q Consensus 307 --------~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~-------------G~TpLh~Aa~~g~~eiv~~Ll 365 (793)
+|..|.||||+|+..|+.+++++|+++|++++ .++.. |.||||+|+..|+.+++++|+
T Consensus 78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156 (256)
T ss_dssp GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 34789999999999999999999999999987 56655 999999999999999999999
Q ss_pred h---cCCCCCcccccCchHHHHHHH--cCChh-------HHHHHHhhCcccc------cccCCCCCCHHHHHHhCCC
Q 003814 366 S---VTKEEDLKEEDRIELLVAVID--AGLYD-------VALDLIQHHPQLA------MARDGNGETALHVLARKPS 424 (793)
Q Consensus 366 ~---~gad~n~~~~~g~t~Lh~A~~--~g~~e-------iv~~LL~~~~~~~------~~~d~~G~TpLh~A~~~g~ 424 (793)
+ +|++++.+|.+|+||||+|+. .++.+ ++++|+++|+++. +.+|..|+||||+|+..|+
T Consensus 157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence 9 999999999999999999999 78888 9999999998853 7899999999999999997
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.4e-30 Score=272.28 Aligned_cols=207 Identities=15% Similarity=0.058 Sum_probs=135.3
Q ss_pred CCCCchHHHHHHHhCcHHH----HHHHHhcCCCCcccccc----cCCChHHHHHH---HhCcHHHHHHHHhCCCCCC---
Q 003814 273 SRNQDTALHIAAGARRTLF----VQELVNLMTPEDLALRN----KVGNTALCFAA---VSGVTKIAEVMVNKNRELP--- 338 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~ei----Vk~LL~~~~gad~~~~d----~~G~TpLh~Aa---~~g~~~iv~~Ll~~g~~~~--- 338 (793)
+..|+||||.||+.|+.+. +++|++ .+++++..+ ..|.||||+|+ +.|+.+++++|++.|++..
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLT--HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 3456666666666666663 333333 455555444 45666666666 5566666666666654311
Q ss_pred -------CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc--------------ccCchHHHHHHHcCChhHHHHH
Q 003814 339 -------SIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE--------------EDRIELLVAVIDAGLYDVALDL 397 (793)
Q Consensus 339 -------~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~--------------~~g~t~Lh~A~~~g~~eiv~~L 397 (793)
...|..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 1234467777777777777777777777777777776 4677777777777777777777
Q ss_pred Hh---hCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCc
Q 003814 398 IQ---HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDD 474 (793)
Q Consensus 398 L~---~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~ 474 (793)
++ .++++ +.+|.+|+||||+|+..++.. . +..
T Consensus 160 l~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~-----~---------------------------~~~------------ 194 (260)
T 3jxi_A 160 TENGHKQADL-RRQDSRGNTVLHALVAIADNT-----R---------------------------ENT------------ 194 (260)
T ss_dssp HHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSS-----H---------------------------HHH------------
T ss_pred HhccccCCCC-cccCCCCCcHHHHHHHhccCc-----h---------------------------hHH------------
Confidence 77 66664 677788888888888655410 0 000
Q ss_pred cccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCc------ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 003814 475 SKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 545 (793)
Q Consensus 475 ~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~------~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~ 545 (793)
....+++++|+++|+++. +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 195 -------------------~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 195 -------------------KFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 011356777777776621 5678888888888888888888888888876554
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=2.3e-29 Score=245.79 Aligned_cols=155 Identities=23% Similarity=0.268 Sum_probs=144.2
Q ss_pred hHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCC
Q 003814 278 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH 357 (793)
Q Consensus 278 TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~ 357 (793)
++|+.||+.|+.++|+.||+ .|+|+|.+|.+|+||||+|+..++.+++++|+++|++++ .+|.+|.||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~--~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCC
Confidence 57999999999999999999 899999999999999999999999999999999999997 799999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHH
Q 003814 358 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRR 437 (793)
Q Consensus 358 ~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ 437 (793)
.++|++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|++.|+ .++++.
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~-------~~iv~~ 154 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGN-------EEVVKL 154 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC-------HHHHHH
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC-------HHHHHH
Confidence 99999999999999999999999999999999999999999999996 8999999999999999987 445554
Q ss_pred hhhcCC
Q 003814 438 CIYSVP 443 (793)
Q Consensus 438 ll~~~~ 443 (793)
|+..+.
T Consensus 155 Ll~~GA 160 (169)
T 4gpm_A 155 LEKQGG 160 (169)
T ss_dssp HHTC--
T ss_pred HHHCCC
Confidence 444443
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.8e-29 Score=246.69 Aligned_cols=170 Identities=18% Similarity=0.165 Sum_probs=153.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHH
Q 003814 241 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV 320 (793)
Q Consensus 241 g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~ 320 (793)
+.||||.||..|+.+++++|++.++..++.. |..|.||||+|+..|+.++|++|++ .|++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLE--WGADPHILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCchhhcccCCCHHHHHHH
Confidence 4589999999999999999999877666655 8999999999999999999999999 799999999999999999999
Q ss_pred hCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhh
Q 003814 321 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH 400 (793)
Q Consensus 321 ~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~ 400 (793)
.|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999999997 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCH
Q 003814 401 HPQLAMARDGNGETA 415 (793)
Q Consensus 401 ~~~~~~~~d~~G~Tp 415 (793)
+++. ..++..|.||
T Consensus 158 ~~~~-~~~~~~~~~p 171 (172)
T 3v30_A 158 ILKL-FQSNLVPADP 171 (172)
T ss_dssp HHHH-SCC-------
T ss_pred HHHH-hcccCCCCCC
Confidence 9986 6677777776
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=1.2e-29 Score=265.14 Aligned_cols=183 Identities=17% Similarity=0.148 Sum_probs=159.5
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHh----cCCcccccc---CCCCCchHHHHHH---HhCcHHHHHHHHhcCCCCc----
Q 003814 238 CFTSYAPLHLAALKGDWDFARNFFN----LNPEAVCVR---ISRNQDTALHIAA---GARRTLFVQELVNLMTPED---- 303 (793)
Q Consensus 238 d~~g~T~Lh~Aa~~G~~~~v~~LL~----~~~~~~~~~---~d~~g~TpLh~Aa---~~g~~eiVk~LL~~~~gad---- 303 (793)
+..|+|+||.||+.|+.+.++.|++ .+. .++.. .|..|.||||+|+ +.|+.++|++|++ .|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~ 78 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD--IAEKTGNM 78 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH--HHHHTTCH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH--hcccccch
Confidence 3467899999999999997666665 443 33322 2477999999999 7799999999999 5543
Q ss_pred -------ccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCC--------------CCCCCHHHHHHHcCCHHHHH
Q 003814 304 -------LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRG--------------NKGATPLCMAALLGHKEMIW 362 (793)
Q Consensus 304 -------~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~--------------~~G~TpLh~Aa~~g~~eiv~ 362 (793)
++.+|..|.||||+|+..|+.++|++|+++|++++ .++ ..|.||||+|+..|+.++++
T Consensus 79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 157 (260)
T 3jxi_A 79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVH 157 (260)
T ss_dssp HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHH
T ss_pred HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHHH
Confidence 45566799999999999999999999999999997 566 68999999999999999999
Q ss_pred HHHh---cCCCCCcccccCchHHHHHHHcCC---------hhHHHHHHhhCcccc------cccCCCCCCHHHHHHhCCC
Q 003814 363 YLYS---VTKEEDLKEEDRIELLVAVIDAGL---------YDVALDLIQHHPQLA------MARDGNGETALHVLARKPS 424 (793)
Q Consensus 363 ~Ll~---~gad~n~~~~~g~t~Lh~A~~~g~---------~eiv~~LL~~~~~~~------~~~d~~G~TpLh~A~~~g~ 424 (793)
+|++ +|++++.+|..|+||||+|+..++ .+++++|+++|+++. +.+|.+|+||||+|+..|+
T Consensus 158 ~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 9999 999999999999999999999888 799999999998852 5789999999999999998
No 56
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=1.1e-30 Score=287.39 Aligned_cols=268 Identities=12% Similarity=0.058 Sum_probs=148.2
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhcCCccc-cccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCc---ccccccCC
Q 003814 236 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAV-CVRISRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVG 311 (793)
Q Consensus 236 ~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~-~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad---~~~~d~~G 311 (793)
.++.+++||||+||+.|+.++|++|++.+.... ....+..|.||||+||..|+.++|++|++ +|++ .+..+.+
T Consensus 87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~--~gad~~~~~i~~~~- 163 (376)
T 2aja_A 87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE--LAPTEIMAMIQAEN- 163 (376)
T ss_dssp HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH--SCTTTHHHHHSHHH-
T ss_pred HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccccCCCC-
Confidence 345556677777777777777777776543211 00124456677777777777777777777 5643 1222222
Q ss_pred ChHHHHHHHhCcHHHHHHHHhCCCCCCC-CCCCCCCCHHHHHH-HcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcC
Q 003814 312 NTALCFAAVSGVTKIAEVMVNKNRELPS-IRGNKGATPLCMAA-LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG 389 (793)
Q Consensus 312 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~-~~~~~G~TpLh~Aa-~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g 389 (793)
.||||+|+..|+.++|++|+++|++++. ..|..|.||||+|+ ..|+.++|++|+++|+ .|.||||.|+..|
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g 236 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYG 236 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCC
Confidence 6777777777777777777777766541 15556677777777 7777777777776553 2667777777777
Q ss_pred ChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHH
Q 003814 390 LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQV 469 (793)
Q Consensus 390 ~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~ 469 (793)
+.+++++|++++++. +..+ ++++.|+..|+...... .-.......++.++.+
T Consensus 237 ~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~vv~~----------------------~~~~~~~~~~~~li~~- 288 (376)
T 2aja_A 237 EKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFDLVTK----------------------SECLQGFYMLRNLIRR- 288 (376)
T ss_dssp TTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCCCSSH----------------------HHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHhcCccc-cccc----HHHHHHHHCCChhhhcH----------------------HhhhhhHHHHHHHHHc-
Confidence 777777777766654 2222 35566666655211100 0000011122222221
Q ss_pred HhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCC----cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 003814 470 LLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL----IWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 545 (793)
Q Consensus 470 l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~----~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~ 545 (793)
...+..+.+++|++.+.-- .......+.||||+|+..|+.+++++|++.| .
T Consensus 289 ----------------------~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~ 343 (376)
T 2aja_A 289 ----------------------NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---S 343 (376)
T ss_dssp ----------------------CCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---H
T ss_pred ----------------------chhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---H
Confidence 1123466777777643210 1122346779999999999999999999875 3
Q ss_pred hhhhcccCCCCcHHHHHhHhCCCCc
Q 003814 546 LIASYKDENNNNMLHLAGKLAPPDR 570 (793)
Q Consensus 546 ~l~n~~D~~G~TpLHlAa~~~~~~~ 570 (793)
+ +|..|+||+.+|-..|..+.
T Consensus 344 v----~~~~~~~~~~~~~~~~~~~~ 364 (376)
T 2aja_A 344 V----LALTKANNYYINETGGRLDL 364 (376)
T ss_dssp H----HHSCC---------------
T ss_pred H----HHHHHHhccccccccccccH
Confidence 3 78899999999998887653
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.5e-28 Score=244.82 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=153.9
Q ss_pred CcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCC
Q 003814 233 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN 312 (793)
Q Consensus 233 ~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~ 312 (793)
.+|.+|..|+||||+||..|+.+++++|++.+. +++.. |..|.||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~ 102 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDK-DIEGSTALIWAVKNNRLGIAEKLLS--KGSNVNTKDFSGK 102 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTSC
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccccc-cccCccHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCC
Confidence 356788999999999999999999999998755 34443 8899999999999999999999999 7999999999999
Q ss_pred hHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChh
Q 003814 313 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD 392 (793)
Q Consensus 313 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~e 392 (793)
||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence 99999999999999999999999997 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 003814 393 VALDLIQHH 401 (793)
Q Consensus 393 iv~~LL~~~ 401 (793)
++++|++.+
T Consensus 182 ~v~~Ll~~~ 190 (192)
T 2rfm_A 182 VIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999999875
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=3.4e-28 Score=236.30 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=151.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHH
Q 003814 240 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 319 (793)
Q Consensus 240 ~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa 319 (793)
.|.||||.|+..|+.+++++|++.+. +++.. |..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQEN-VINHT-DEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSS-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCC-CcCCC-CCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCcCCCCCcHHHHHH
Confidence 47899999999999999999998764 45544 8899999999999999999999999 79999999999999999999
Q ss_pred HhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHh
Q 003814 320 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 399 (793)
Q Consensus 320 ~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~ 399 (793)
..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999997 789999999999999999999999999999999999999999999999999999999999
Q ss_pred hCccc
Q 003814 400 HHPQL 404 (793)
Q Consensus 400 ~~~~~ 404 (793)
+++++
T Consensus 157 ~~~~~ 161 (167)
T 3v31_A 157 HLLKL 161 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=259.57 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=162.4
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCC-cccccccCCChHHHHHH-
Q 003814 242 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPE-DLALRNKVGNTALCFAA- 319 (793)
Q Consensus 242 ~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~ga-d~~~~d~~G~TpLh~Aa- 319 (793)
++++|.|+..|+.+.++.+++..........|.+|+||||+||..|+.++|++|++ .|+ +++.+|..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLD--SGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TSCCCTTCCCTTSCCHHHHGGG
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHH--CCCCcCCCCCCCCCCHHHHHHH
Confidence 37899999999999999998765443333348999999999999999999999999 787 99999999999999999
Q ss_pred ----HhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHH
Q 003814 320 ----VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVAL 395 (793)
Q Consensus 320 ----~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~ 395 (793)
..++.+++++|++.|.+.+ ..+..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+..|+.++++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 7789999999999998775 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-hCcccccccCCCCCCHHHHHHhCCC
Q 003814 396 DLIQ-HHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 396 ~LL~-~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
+|++ .|+++ +.+|.+|+||||+|+..|+
T Consensus 234 ~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~ 262 (276)
T 4hbd_A 234 LLLAVPSCDI-SLTDRDGSTALMVALDAGQ 262 (276)
T ss_dssp HHHTSTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred HHHhcCCCCC-cCcCCCCCCHHHHHHHcCC
Confidence 9999 77775 8899999999999999987
No 60
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2e-30 Score=266.50 Aligned_cols=195 Identities=19% Similarity=0.109 Sum_probs=170.0
Q ss_pred HhhcCCCCcCCcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCC
Q 003814 223 SLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPE 302 (793)
Q Consensus 223 ~l~~~G~~~~~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~ga 302 (793)
.++++|..+...+..+.+|.||||+||..|+.+++++|++.+. +++.+ |..|+||||+||..|+.++|++|++ .|+
T Consensus 3 ~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~--~ga 78 (229)
T 2vge_A 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-DPSQP-NEEGITALHNAICGANYSIVDFLIT--AGA 78 (229)
T ss_dssp -------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTC
T ss_pred ehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--CCC
Confidence 4567788888888899999999999999999999999998765 45554 8999999999999999999999999 899
Q ss_pred cccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhcCCCCCcccccCch
Q 003814 303 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA--ALLGHKEMIWYLYSVTKEEDLKEEDRIE 380 (793)
Q Consensus 303 d~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A--a~~g~~eiv~~Ll~~gad~n~~~~~g~t 380 (793)
+++.+|..|+||||+|+..|+.+++++|+++|++++...+..|.||||+| +..|+.+++++|+++|++++..+..|.|
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 158 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY 158 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence 99999999999999999999999999999999999854457999999999 9999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHhhCccc-ccccCCCCCCHHHHHHhCCC
Q 003814 381 LLVAVIDAGLYDVALDLIQHHPQL-AMARDGNGETALHVLARKPS 424 (793)
Q Consensus 381 ~Lh~A~~~g~~eiv~~LL~~~~~~-~~~~d~~G~TpLh~A~~~g~ 424 (793)
|++.++..+. .+.|++.|++. .+.+|.+|+||||+|+..|+
T Consensus 159 ~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 159 ALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQ 200 (229)
T ss_dssp ESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred HHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCC
Confidence 9986554443 35778888874 47889999999999999987
No 61
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.8e-30 Score=285.78 Aligned_cols=260 Identities=15% Similarity=0.094 Sum_probs=170.3
Q ss_pred chhhHHhhcCCCCc------------CCcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCc----cccccCCCCCchHHH
Q 003814 218 AQPAVSLSQPGAVS------------GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPE----AVCVRISRNQDTALH 281 (793)
Q Consensus 218 ~~~l~~l~~~G~~~------------~~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~----~~~~~~d~~g~TpLh 281 (793)
.+|++.|+..|+.. ...+..+..|+||||+||..|+.++|++|++.+++ .+.. .+ .||||
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~---~~-~TpLh 168 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA---EN-YHAFR 168 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH---HH-HHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC---CC-CCHHH
Confidence 46788777777743 12234456788999999999999999999988753 2322 22 99999
Q ss_pred HHHHhCcHHHHHHHHhcCCCCcccc--cccCCChHHHHHH-HhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCH
Q 003814 282 IAAGARRTLFVQELVNLMTPEDLAL--RNKVGNTALCFAA-VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK 358 (793)
Q Consensus 282 ~Aa~~g~~eiVk~LL~~~~gad~~~--~d~~G~TpLh~Aa-~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~ 358 (793)
+||..|+.++|++|++ +|++++. +|..|.||||+|+ ..|+.++|++|+++|+ .|.||||+|+..|+.
T Consensus 169 ~Aa~~G~~eiv~~Ll~--~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~ 238 (376)
T 2aja_A 169 LAAENGHLHVLNRLCE--LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEK 238 (376)
T ss_dssp HHHHTTCHHHHHHHHH--SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTT
T ss_pred HHHHCCCHHHHHHHHH--cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCH
Confidence 9999999999999999 8999888 8999999999999 9999999999999774 288999999999999
Q ss_pred HHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCccccchhhHHHHh
Q 003814 359 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRC 438 (793)
Q Consensus 359 eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~~~~~~~~~l 438 (793)
+++++|+++|++++..+ ++++.|+.+|+.++++..-... +...+......+.. ..
T Consensus 239 evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~----------~~~~~~~li~~~~~----~~------- 293 (376)
T 2aja_A 239 YVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQ----------GFYMLRNLIRRNDE----VL------- 293 (376)
T ss_dssp THHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHH----------HHHHHHHHHHHCCG----GG-------
T ss_pred HHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhh----------hHHHHHHHHHcchh----hH-------
Confidence 99999999998876554 4778888889888664211000 00011111111110 01
Q ss_pred hhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCC
Q 003814 439 IYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHS 518 (793)
Q Consensus 439 l~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G 518 (793)
.+.+++|++..........+.....+.||||+|+..|+.+++++|++.+ ..+|..|
T Consensus 294 --------------------~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~ 349 (376)
T 2aja_A 294 --------------------LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTK 349 (376)
T ss_dssp --------------------HHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC
T ss_pred --------------------HHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHH
Confidence 2344444431110000111122235679999999999999999999864 5578899
Q ss_pred CCHHHHHHHcCCHHHHHHHHHc
Q 003814 519 RSMFHIAVVHRQEKIFNLIYEL 540 (793)
Q Consensus 519 ~T~Lh~A~~~g~~~iv~~Ll~~ 540 (793)
+|++.+|-..|+.++.+.-+++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 350 ANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp ----------------------
T ss_pred HhccccccccccccHHHHHHHH
Confidence 9999999999999998876543
No 62
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2.6e-28 Score=236.71 Aligned_cols=161 Identities=25% Similarity=0.197 Sum_probs=148.5
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHH
Q 003814 237 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC 316 (793)
Q Consensus 237 ~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh 316 (793)
.+.+|.||||.|+..|+.++++.|++..+...... +..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQ--HGADVHAKDKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHh--cCCCCCccCCCCCCHHH
Confidence 45678899999999999999999998777655554 8889999999999999999999999 89999999999999999
Q ss_pred HHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHH
Q 003814 317 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 396 (793)
Q Consensus 317 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~ 396 (793)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|.. ++.+++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence 9999999999999999999997 789999999999999999999999999999999999999999999877 89999999
Q ss_pred HHhhCc
Q 003814 397 LIQHHP 402 (793)
Q Consensus 397 LL~~~~ 402 (793)
|+++|+
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 998875
No 63
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=258.53 Aligned_cols=191 Identities=16% Similarity=0.217 Sum_probs=161.8
Q ss_pred CchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCC-CCCCCCCCCCCCHHHHHH-
Q 003814 276 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNR-ELPSIRGNKGATPLCMAA- 353 (793)
Q Consensus 276 g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~-~~~~~~~~~G~TpLh~Aa- 353 (793)
..+++|.|+..|+.+.++.+++...+..+|.+|.+|+||||+|+..|+.++|++|+++|+ +++ ..+..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVD-KQNRAGYSPIMLTAL 154 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHGGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCC-CCCCCCCCHHHHHHH
Confidence 457889999999999999998832223388999999999999999999999999999998 554 78999999999999
Q ss_pred ----HcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCCCcccc
Q 003814 354 ----LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASG 429 (793)
Q Consensus 354 ----~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~~~~s~ 429 (793)
..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|+++ +.+|.+
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~------------------ 215 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDD------------------ 215 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT------------------
T ss_pred HHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCC------------------
Confidence 668899999999999988888888999999999999999999998887764 444444
Q ss_pred chhhHHHHhhhcCCCcccccCCchhHHHHHHHHHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHH-hCC
Q 003814 430 SQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-MYP 508 (793)
Q Consensus 430 ~~~~~~~~ll~~~~~~~~~~~~t~lh~a~~~~~~~Ll~~~l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~eiv~~LL~-~g~ 508 (793)
|.||||+|+..|+.+++++|++ .|+
T Consensus 216 ------------------------------------------------------G~TpLh~A~~~g~~~iv~~Ll~~~ga 241 (276)
T 4hbd_A 216 ------------------------------------------------------GSTALMCACEHGHKEIAGLLLAVPSC 241 (276)
T ss_dssp ------------------------------------------------------SCCHHHHHHHHTCHHHHHHHHTSTTC
T ss_pred ------------------------------------------------------CCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence 4555556666677889999998 788
Q ss_pred CCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 003814 509 NLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELG 541 (793)
Q Consensus 509 d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~g 541 (793)
+ ++.+|..|+||||+|+..|+.+++++|++++
T Consensus 242 d-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 242 D-ISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred C-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 8 8888999999999999999999999999875
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=5.8e-28 Score=237.74 Aligned_cols=167 Identities=13% Similarity=0.068 Sum_probs=154.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHH
Q 003814 239 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA 318 (793)
Q Consensus 239 ~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~A 318 (793)
..+.++||.||..|+.+++++|++..+.+++.. |..|.||||+|+..|+.++|++|++ .|++++.+|..|.||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCCHHHHH
Confidence 356789999999999999999999877777665 8999999999999999999999999 8999999999999999999
Q ss_pred HHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHH
Q 003814 319 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLI 398 (793)
Q Consensus 319 a~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL 398 (793)
+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 78999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcccccccCC
Q 003814 399 QHHPQLAMARDG 410 (793)
Q Consensus 399 ~~~~~~~~~~d~ 410 (793)
+.++++ +..+.
T Consensus 159 ~~g~~~-~~~~~ 169 (179)
T 3f6q_A 159 KMGQNL-NRIPY 169 (179)
T ss_dssp HTTCCC-SCBCC
T ss_pred HhhcCc-ccCCc
Confidence 999987 44433
No 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1.2e-27 Score=231.06 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=146.1
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHH
Q 003814 240 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 319 (793)
Q Consensus 240 ~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa 319 (793)
...||||.|+..|+.+++++|++.+. +++.. |..|+||||+|+. |+.+++++|++ .|++++.+|..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNV-NVNAQ-NGFGRTALQVMKL-GNPEIARRLLL--RGANPDLKDRTGFAVIHDAA 78 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCC-CTTCC-CTTSCCHHHHCCS-SCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCC-Ccccc-CccCccHHHHHHc-CcHHHHHHHHH--cCCCCCCCCCCCCCHHHHHH
Confidence 35699999999999999999998654 44444 8899999999999 99999999999 89999999999999999999
Q ss_pred HhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCcccccCchHHHHHHHcCChhHHHHHH
Q 003814 320 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE-EDLKEEDRIELLVAVIDAGLYDVALDLI 398 (793)
Q Consensus 320 ~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad-~n~~~~~g~t~Lh~A~~~g~~eiv~~LL 398 (793)
..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+
T Consensus 79 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999987 7899999999999999999999999999998 5999999999999999999999999999
Q ss_pred hhCcc
Q 003814 399 QHHPQ 403 (793)
Q Consensus 399 ~~~~~ 403 (793)
++|++
T Consensus 158 ~~GAd 162 (162)
T 1ihb_A 158 ANGAG 162 (162)
T ss_dssp HTC--
T ss_pred HhCCC
Confidence 99874
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=2.4e-27 Score=231.15 Aligned_cols=160 Identities=25% Similarity=0.236 Sum_probs=147.3
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHH
Q 003814 237 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC 316 (793)
Q Consensus 237 ~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh 316 (793)
....+.|+||.||+.|+.+++++|++.+. +++.+ |..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 85 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGA-DVNAE-DASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAVDHAGMTPLR 85 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHH
Confidence 34556799999999999999999998754 44444 8899999999999999999999999 89999999999999999
Q ss_pred HHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHH
Q 003814 317 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 396 (793)
Q Consensus 317 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~ 396 (793)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus 86 ~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence 9999999999999999999987 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhC
Q 003814 397 LIQHH 401 (793)
Q Consensus 397 LL~~~ 401 (793)
|++.|
T Consensus 165 L~~~G 169 (169)
T 2y1l_E 165 LQKLN 169 (169)
T ss_dssp HHTC-
T ss_pred HHHcC
Confidence 99864
No 67
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=2.6e-27 Score=226.78 Aligned_cols=151 Identities=23% Similarity=0.151 Sum_probs=142.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHH
Q 003814 241 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV 320 (793)
Q Consensus 241 g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~ 320 (793)
..||||.|+..|+.+++++|++.+... . .+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~--~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-T--TDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-C--CCTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-C--cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHHH
Confidence 358999999999999999999987643 2 37899999999999999999999999 899999999999999999999
Q ss_pred hCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHH
Q 003814 321 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL 397 (793)
Q Consensus 321 ~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~L 397 (793)
.|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus 77 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 77 EGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999997 7899999999999999999999999999999999999999999999999999999987
No 68
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=1.6e-27 Score=232.74 Aligned_cols=69 Identities=14% Similarity=0.039 Sum_probs=40.4
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhcccCCCCcH
Q 003814 485 SRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNM 558 (793)
Q Consensus 485 ~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~gad~~~l~n~~D~~G~Tp 558 (793)
.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++... ++..|.||
T Consensus 103 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~----~~~~~~~p 171 (172)
T 3v30_A 103 GTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ----SNLVPADP 171 (172)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSC----C-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhc----ccCCCCCC
Confidence 3444444445556666667777666 666677777777777777777777777777766543 56666665
No 69
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.6e-27 Score=227.15 Aligned_cols=154 Identities=20% Similarity=0.239 Sum_probs=144.8
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHH
Q 003814 241 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV 320 (793)
Q Consensus 241 g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~ 320 (793)
|.||||.|+..|+.+++++|++..+.+++.. |..|.||||+ +..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLK--QGASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHH
Confidence 5689999999999999999998844455554 8899999999 99999999999999 899999999999999999999
Q ss_pred hCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhh
Q 003814 321 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH 400 (793)
Q Consensus 321 ~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~ 400 (793)
.|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ ++++.++.+|.||||+|+..|+.+++++|+++
T Consensus 78 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999987 7899999999999999999999999999 99999999999999999999999999999974
No 70
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=3.4e-27 Score=234.90 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=144.3
Q ss_pred CCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHH
Q 003814 272 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 351 (793)
Q Consensus 272 ~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~ 351 (793)
+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~ 107 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMW 107 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHH--HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH--hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHH
Confidence 48899999999999999999999999 799999999999999999999999999999999999987 789999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCC
Q 003814 352 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 352 Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGR 179 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999986 8899999999999999987
No 71
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=5.3e-27 Score=226.42 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=140.6
Q ss_pred CCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHH
Q 003814 274 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 353 (793)
Q Consensus 274 ~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa 353 (793)
....||||.|+..|+.+++++|++ .|++++.+|..|+||||+|+. |+.+++++|+++|++++ .++..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAA 78 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHh--CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence 356799999999999999999999 899999999999999999999 99999999999999997 78999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCC
Q 003814 354 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 354 ~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++++++..+.+|..|.||||+|+..|+
T Consensus 79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~ 149 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149 (162)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999998668999999999999999987
No 72
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=8.6e-27 Score=226.41 Aligned_cols=146 Identities=12% Similarity=0.180 Sum_probs=141.2
Q ss_pred CCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHH
Q 003814 275 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 354 (793)
Q Consensus 275 ~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~ 354 (793)
.|.||||.|+..|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHH
Confidence 57899999999999999999999 789999999999999999999999999999999999987 789999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCC
Q 003814 355 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 355 ~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~ 147 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGY 147 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999986 8899999999999999987
No 73
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.9e-26 Score=224.69 Aligned_cols=148 Identities=24% Similarity=0.292 Sum_probs=141.7
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
...+.||||.||+.|+.++|++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHH
Confidence 5677899999999999999999999 899999999999999999999999999999999999987 7899999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCC
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999986 8899999999999999987
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.2e-29 Score=260.83 Aligned_cols=162 Identities=19% Similarity=0.092 Sum_probs=138.4
Q ss_pred HHHHHhcCCccc-cccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCC
Q 003814 257 ARNFFNLNPEAV-CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNR 335 (793)
Q Consensus 257 v~~LL~~~~~~~-~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~ 335 (793)
++.||+++.... ....+.+|.||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga 78 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh--cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 355676654432 12236678899999999999999999999 799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc-ccCchHHHHH--HHcCChhHHHHHHhhCcccccccCCCC
Q 003814 336 ELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAV--IDAGLYDVALDLIQHHPQLAMARDGNG 412 (793)
Q Consensus 336 ~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~-~~g~t~Lh~A--~~~g~~eiv~~LL~~~~~~~~~~d~~G 412 (793)
+++ .+|..|.||||+|+..|+.+++++|+++|++++..+ .+|.||||+| +..|+.+++++|++.|+++ +.+|..|
T Consensus 79 ~~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~ 156 (229)
T 2vge_A 79 NVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGA 156 (229)
T ss_dssp CTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGE
T ss_pred CCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCc
Confidence 997 789999999999999999999999999999999986 6999999999 9999999999999999986 7888889
Q ss_pred CCHHHHHHhC
Q 003814 413 ETALHVLARK 422 (793)
Q Consensus 413 ~TpLh~A~~~ 422 (793)
.||++.++..
T Consensus 157 ~~~l~~~~~~ 166 (229)
T 2vge_A 157 VYALWDYSAE 166 (229)
T ss_dssp EEESSCBCCS
T ss_pred hHHHHHHhhc
Confidence 9998865543
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=4e-26 Score=218.51 Aligned_cols=144 Identities=21% Similarity=0.178 Sum_probs=137.7
Q ss_pred CchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHc
Q 003814 276 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 355 (793)
Q Consensus 276 g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~ 355 (793)
..||||.|++.|+.++|++|++ .|.+++ .|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~--~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHH--cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHc
Confidence 4699999999999999999999 688876 58899999999999999999999999999987 7899999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCC
Q 003814 356 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 356 g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+
T Consensus 78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999986 8899999999999999987
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2.5e-27 Score=244.91 Aligned_cols=179 Identities=16% Similarity=0.067 Sum_probs=135.2
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHH
Q 003814 239 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA 318 (793)
Q Consensus 239 ~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~A 318 (793)
..|.||||.|+..|+.+.++.|++++.. ++. +..|.||||.|+..|+.++|++|++ .|++++.+|..|.||||+|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF--NPLPLALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALHNA 77 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCC-ccc--CchhhHHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHH
Confidence 4688999999999999999999986554 332 5789999999999999999999999 8999999999999999999
Q ss_pred HHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCc-hHHHHH--HHcCChhHHH
Q 003814 319 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI-ELLVAV--IDAGLYDVAL 395 (793)
Q Consensus 319 a~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~-t~Lh~A--~~~g~~eiv~ 395 (793)
+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||||+| +..|+.++++
T Consensus 78 ~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp HHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence 99999999999999999997 7899999999999999999999999999999999998877 999999 8889999999
Q ss_pred HHHhhCccccccc---------CCCCCCHHHHHHhCCC
Q 003814 396 DLIQHHPQLAMAR---------DGNGETALHVLARKPS 424 (793)
Q Consensus 396 ~LL~~~~~~~~~~---------d~~G~TpLh~A~~~g~ 424 (793)
+|++.+++. +.. +..+.+|++++...|.
T Consensus 157 ~Ll~~~a~~-~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 157 FLYGVQEKM-GIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHHT-TTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHhhhcc-cccccceEEEEeccCCCCCCcccccCCC
Confidence 999998775 332 6678899998888775
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=5e-26 Score=223.87 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=98.6
Q ss_pred CCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHH
Q 003814 274 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 353 (793)
Q Consensus 274 ~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa 353 (793)
.++.+|||.||..|+.++|++|++. .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHH
Confidence 4567788888888888888888874 466778888888888888888888888888888888776 57777888888888
Q ss_pred HcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHH
Q 003814 354 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL 419 (793)
Q Consensus 354 ~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A 419 (793)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A 145 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKA 145 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGS
T ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHH
Confidence 888888888888877777666666666666655555555555555555543 34444444444433
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=9.5e-26 Score=216.27 Aligned_cols=144 Identities=20% Similarity=0.202 Sum_probs=137.3
Q ss_pred CchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHc
Q 003814 276 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 355 (793)
Q Consensus 276 g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~ 355 (793)
+.||||.|+..|+.+++++|++. .+.+++.+|..|.||||+ +..|+.+++++|+++|++++ .+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHc
Confidence 57999999999999999999995 466999999999999999 99999999999999999987 7899999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCC
Q 003814 356 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 356 g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++. +++ +.+|.+|.||||+|+..|+
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~ 145 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGA 145 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCC
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCc
Confidence 999999999999999999999999999999999999999999999 664 8899999999999999987
No 79
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=3.7e-26 Score=221.41 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=139.8
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
|.+|.||||.|++.|+.++++.|++. .+.+++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHH
Confidence 67899999999999999999999986 577888899999999999999999999999999999987 7899999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCC
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++++ +.+|.+|.||||+|+. ++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~ 152 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GD 152 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TC
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CC
Confidence 9999999999999999999999999999999999999999999999999986 8999999999999876 54
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=8.3e-27 Score=240.98 Aligned_cols=116 Identities=13% Similarity=0.157 Sum_probs=69.5
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCC-CHHHHH--HHcCCHHHHHHHHHcCCChhhhh-----hcccCCCC
Q 003814 485 SRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSR-SMFHIA--VVHRQEKIFNLIYELGAHKDLIA-----SYKDENNN 556 (793)
Q Consensus 485 ~t~Lh~Aa~~g~~eiv~~LL~~g~d~~~~~d~~G~-T~Lh~A--~~~g~~~iv~~Ll~~gad~~~l~-----n~~D~~G~ 556 (793)
.||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+| +..|+.+++++|+++|++++... ...|..|.
T Consensus 104 ~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~ 182 (239)
T 1ycs_B 104 WTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182 (239)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCS
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCC
Confidence 3334444444555666666666666 555555544 777776 56667777777777776665410 11378899
Q ss_pred cHHHHHhHhCCCCcccccCCchhHhHHHhhhHHHHHHhhccchhHhhhcCCCCchhhhhh
Q 003814 557 NMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSE 616 (793)
Q Consensus 557 TpLHlAa~~~~~~~l~l~~Ga~~~~~~~l~~~~~v~~ll~~~~~~~~n~~G~Tpl~la~e 616 (793)
||++++.+.|..-.++...+.+. -.|. .....++.|.+|..+...
T Consensus 183 ~~~eLa~~~G~~i~vl~~~~~~~-----~~Ww----------~~~~~~~~G~~P~~yv~~ 227 (239)
T 1ycs_B 183 NDDELPMKEGDCMTIIHREDEDE-----IEWW----------WARLNDKEGYVPRNLLGL 227 (239)
T ss_dssp STTBCCBCSSCEEEECCCCTTSC-----SSEE----------EEEETTEEEEEEGGGEEC
T ss_pred CCCcccccCCCEEEEEEecCCCC-----CCEE----------EEEECCcEEEeehHHeeE
Confidence 99999998887544444433320 0111 013457788999887653
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=8.7e-26 Score=224.02 Aligned_cols=157 Identities=14% Similarity=0.041 Sum_probs=141.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcH----HHHHHHHhcCCCCcccccccCCChHHH
Q 003814 241 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRT----LFVQELVNLMTPEDLALRNKVGNTALC 316 (793)
Q Consensus 241 g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~----eiVk~LL~~~~gad~~~~d~~G~TpLh 316 (793)
++++||.|++.|+.+.++.++..+.. ...+..|+||||+|+..|+. ++|++|++ +|+++|.+|..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~--~Gadvn~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLIN--KGADIKSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH--TTCCSSCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHH--CCCCCCCCCCCCCcHHH
Confidence 46899999999999999999976543 22136799999999999975 59999999 89999999999999999
Q ss_pred HHHHhCc------HHHHHHHHhCCCCCCCCCCCCCC-CHHHHHHHcC-----CHHHHHHHHh-cCCCCCcccccCchHHH
Q 003814 317 FAAVSGV------TKIAEVMVNKNRELPSIRGNKGA-TPLCMAALLG-----HKEMIWYLYS-VTKEEDLKEEDRIELLV 383 (793)
Q Consensus 317 ~Aa~~g~------~~iv~~Ll~~g~~~~~~~~~~G~-TpLh~Aa~~g-----~~eiv~~Ll~-~gad~n~~~~~g~t~Lh 383 (793)
+|+..|+ .+++++|+++|++++ .+|..|. ||||+|+..+ +.+++++|++ +|++++.+|..|.||||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~ 159 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence 9999987 689999999999997 7999999 9999999954 4679999999 99999999999999999
Q ss_pred HHHHcCChhHHHHHHhhCcc
Q 003814 384 AVIDAGLYDVALDLIQHHPQ 403 (793)
Q Consensus 384 ~A~~~g~~eiv~~LL~~~~~ 403 (793)
+|+..|+.+++++|.+....
T Consensus 160 ~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 160 FVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987544
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=6.6e-25 Score=205.77 Aligned_cols=126 Identities=18% Similarity=0.145 Sum_probs=67.7
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCC-CCCHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK-GATPLCM 351 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~-G~TpLh~ 351 (793)
+..|.||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+. |+.+++++|+++|++++ .++.. |.||||+
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~ 84 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLE--AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPATLTRPVHD 84 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTTTBCHHHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHH--cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCCCCCHHHH
Confidence 4455555555555555555555555 455555555555555555555 55555555555555544 34444 5555555
Q ss_pred HHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCc
Q 003814 352 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 402 (793)
Q Consensus 352 Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~ 402 (793)
|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 555555555555555555555555555555555555555555555555443
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=6.4e-25 Score=210.98 Aligned_cols=140 Identities=18% Similarity=0.093 Sum_probs=77.5
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCC-HHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGAT-PLCM 351 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~T-pLh~ 351 (793)
+..|.||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+ .|+.+++++|+++|++++ .+|..|.| |||+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHD 84 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHH
Confidence 4455666666666666666666666 56666666666666666653 566666666666666654 45556665 6666
Q ss_pred HHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHH
Q 003814 352 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALH 417 (793)
Q Consensus 352 Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh 417 (793)
|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++. +.++..|.||.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~ 149 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAE 149 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccc
Confidence 66666666666666666666666666666666666666666666666666654 555666666655
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=6.8e-25 Score=210.80 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=116.8
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCCh
Q 003814 234 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNT 313 (793)
Q Consensus 234 ~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~T 313 (793)
.+..+..|.||||+|+..|+.+++++|++.+. +++.. |..|+||||+|+ .|+.++|++|++ .|++++.+|..|.|
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~--~g~~~~~~d~~g~t 79 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGA-NPNAP-NSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADPATLT 79 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTC-CTTCC-CSSSCCTTTSSC-TTCHHHHHHHHT--TTCCCCCCCTTTCC
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHH-cCCHHHHHHHHH--cCCCCCCcCCCCCc
Confidence 34567888999999999999999999998744 45554 889999999996 999999999999 89999999999999
Q ss_pred -HHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHH
Q 003814 314 -ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV 385 (793)
Q Consensus 314 -pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A 385 (793)
|||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.+.+
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 80 RPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 9999999999999999999999997 7899999999999999999999999999999999999999987743
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=1.5e-24 Score=203.30 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=123.7
Q ss_pred CcccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccC-C
Q 003814 233 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKV-G 311 (793)
Q Consensus 233 ~~~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~-G 311 (793)
+++..+..|+||||+|+..|+.+++++|++.+. +++.+ |..|+||||+|+. |+.+++++|++ .|++++.+|.. |
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~~g 78 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGA-DPNAL-NRFGRRPIQVMMM-GSAQVAELLLL--HGAEPNCADPATL 78 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTCCTTTTTSTT-SCHHHHHHHHH--HTCCSSCCBTTTT
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC-CcCCc-CCCCCCHHHHHHc-CCHHHHHHHHH--CCCCCCCcCCCCC
Confidence 678889999999999999999999999998754 45554 8999999999999 99999999999 79999999999 9
Q ss_pred ChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 003814 312 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 370 (793)
Q Consensus 312 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad 370 (793)
.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999987 7899999999999999999999999999986
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=1.4e-23 Score=196.58 Aligned_cols=126 Identities=24% Similarity=0.256 Sum_probs=100.1
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
...+.||||+||..|+.++|++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHH
Confidence 4557788888888888888888888 678888888888888888888888888888888888776 5777788888888
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhC
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 401 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~ 401 (793)
+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++.|
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 8888888888888888888888888888888888888888888887654
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=2.8e-23 Score=190.61 Aligned_cols=124 Identities=24% Similarity=0.347 Sum_probs=60.2
Q ss_pred CchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHc
Q 003814 276 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 355 (793)
Q Consensus 276 g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~ 355 (793)
|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred CccHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHHc
Confidence 4444444444444444444444 344444444444444444444444444444444444443 3444444444444444
Q ss_pred CCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCc
Q 003814 356 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 402 (793)
Q Consensus 356 g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~ 402 (793)
|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 44444444444444444444444444444444444444444444443
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=8.8e-23 Score=187.30 Aligned_cols=126 Identities=27% Similarity=0.429 Sum_probs=118.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHH
Q 003814 240 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 319 (793)
Q Consensus 240 ~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa 319 (793)
+|+||||+|+..|+.+++++|++.+.. ++.. +..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAK-DKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCc-CCCCCcHHHHHHHcCcHHHHHHHHH--cCCCCcccCCCCCcHHHHHH
Confidence 588999999999999999999987553 4443 8899999999999999999999999 89999999999999999999
Q ss_pred HhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 003814 320 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 370 (793)
Q Consensus 320 ~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad 370 (793)
..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 77 ~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999987 7899999999999999999999999999986
No 89
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=1.4e-23 Score=208.10 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=129.3
Q ss_pred CchHHHHHHHhCcHHHHHHHHhcCCCCcccccc-cCCChHHHHHHHhCcH----HHHHHHHhCCCCCCCCCCCCCCCHHH
Q 003814 276 QDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVT----KIAEVMVNKNRELPSIRGNKGATPLC 350 (793)
Q Consensus 276 g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d-~~G~TpLh~Aa~~g~~----~iv~~Ll~~g~~~~~~~~~~G~TpLh 350 (793)
+.++||.|++.|+.+.++.+++ .+ ++.++ ..|+||||+|+..|+. +++++|+++|++++ .+|..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~--~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFE--KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHH--HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHh--cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHH
Confidence 4589999999999999999988 34 45556 7899999999999975 59999999999997 78999999999
Q ss_pred HHHHcCC------HHHHHHHHhcCCCCCcccccCc-hHHHHHHHcC-----ChhHHHHHHh-hCcccccccCCCCCCHHH
Q 003814 351 MAALLGH------KEMIWYLYSVTKEEDLKEEDRI-ELLVAVIDAG-----LYDVALDLIQ-HHPQLAMARDGNGETALH 417 (793)
Q Consensus 351 ~Aa~~g~------~eiv~~Ll~~gad~n~~~~~g~-t~Lh~A~~~g-----~~eiv~~LL~-~~~~~~~~~d~~G~TpLh 417 (793)
+|+..|+ .+++++|+++|+++|.+|..|. ||||+|+..+ +.+++++|++ +|+++ +.+|..|+||||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~ 159 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALE 159 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHH
Confidence 9999987 6899999999999999999999 9999999854 3569999999 89986 999999999999
Q ss_pred HHHhCCC
Q 003814 418 VLARKPS 424 (793)
Q Consensus 418 ~A~~~g~ 424 (793)
+|++.|+
T Consensus 160 ~A~~~~~ 166 (186)
T 3t8k_A 160 FVKRCQK 166 (186)
T ss_dssp HHHTTTC
T ss_pred HHHHcCC
Confidence 9999987
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=7.9e-23 Score=191.53 Aligned_cols=127 Identities=21% Similarity=0.199 Sum_probs=116.2
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHH
Q 003814 237 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC 316 (793)
Q Consensus 237 ~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh 316 (793)
....|.||||+||..|+.+++++|++.+. +++.. |..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGA-DVNAK-DEYGLTPLYLATAHGHLEIVEVLLK--NGADVNAVDAIGFTPLH 85 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCC-CCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHH
Confidence 44567899999999999999999998754 45544 8899999999999999999999999 89999999999999999
Q ss_pred HHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 003814 317 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT 368 (793)
Q Consensus 317 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~g 368 (793)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|
T Consensus 86 ~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999986 78999999999999999999999999876
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=8.6e-24 Score=208.88 Aligned_cols=108 Identities=22% Similarity=0.238 Sum_probs=53.6
Q ss_pred CCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHH
Q 003814 275 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 354 (793)
Q Consensus 275 ~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~ 354 (793)
.|.||||+|+..|+.++++.|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++...+..|.||||+|+.
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 44555555555555555555554 445555555555555555555555555555555555442222445555555555
Q ss_pred cCCHHHHHHHHhcCCCCCcccccCchHHHHH
Q 003814 355 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAV 385 (793)
Q Consensus 355 ~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A 385 (793)
.|+.+++++|+++|++++.+|.+|.||||+|
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 150 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELA 150 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHH
Confidence 5555555555555554444443333333333
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=4.5e-23 Score=193.26 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=94.0
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A 83 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHDA 83 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCCHHHHH
Confidence 6777777777777777777777777 677777777777777777777777777777777777775 5777777777777
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhC
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 401 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~ 401 (793)
+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.+.+
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 7777777777777777777777777777777777777666666555543
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=8e-24 Score=219.37 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=60.6
Q ss_pred CCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHH
Q 003814 274 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 353 (793)
Q Consensus 274 ~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa 353 (793)
..|.||||+||..|+.++|+.|++ |++++.+|..|.||||+|+..|+.++|++|+++|++++...+..|.||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 345566666666666666666655 45556666666666666666666666666666666654222255666666666
Q ss_pred HcCCHHHHHHHHhcCCCCCcccccCchHHHH
Q 003814 354 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVA 384 (793)
Q Consensus 354 ~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~ 384 (793)
..|+.+++++|+++|++++.+|..|.||||+
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~ 150 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIEVEDERGLTALEL 150 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 6666666666665555554443333333333
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=3.4e-22 Score=183.69 Aligned_cols=111 Identities=23% Similarity=0.214 Sum_probs=89.6
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
+..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH--cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHH
Confidence 4567788888888888888888888 678888888888888888888888888888888888876 6778888888888
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHH
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI 386 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~ 386 (793)
+..|+.+++++|+++|++++.+|.+|.||||+|.
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 8888888888888888888888888888888874
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=5e-22 Score=196.16 Aligned_cols=140 Identities=24% Similarity=0.184 Sum_probs=126.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccc-cCCChHHH
Q 003814 238 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALC 316 (793)
Q Consensus 238 d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d-~~G~TpLh 316 (793)
+..|+||||+|+..|+.++++.|++ +.+++.+ |..|+||||+|+..|+.++|++|++ .|++++.+| ..|+||||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~~g~tpL~ 115 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCCHHH
Confidence 4577899999999999999999998 4455554 8999999999999999999999999 899999998 89999999
Q ss_pred HHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHH
Q 003814 317 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 396 (793)
Q Consensus 317 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~ 396 (793)
+|+..|+.+++++|+++|++++ .+|..|.||||+|++.++. ..+.++|++|+..|+.++++.
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~ 177 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINV 177 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHH
Confidence 9999999999999999999997 7999999999999985542 346799999999999999999
Q ss_pred HHhh
Q 003814 397 LIQH 400 (793)
Q Consensus 397 LL~~ 400 (793)
|.++
T Consensus 178 L~~~ 181 (183)
T 3deo_A 178 LEGQ 181 (183)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 9864
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=5.8e-22 Score=211.89 Aligned_cols=140 Identities=17% Similarity=0.081 Sum_probs=125.0
Q ss_pred CCchHHHHHHHhCcHHHHHHHHhcCCCCcccc------cccCCChHHHHHHHh---CcHHHHHHHHhCCCCCCCCCCCCC
Q 003814 275 NQDTALHIAAGARRTLFVQELVNLMTPEDLAL------RNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKG 345 (793)
Q Consensus 275 ~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~------~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~~~~~G 345 (793)
.+.++||.|+..|+.+.|+.|++ .|++++. .|..|+||||+|+.. |+.+++++|+++|++++ .+|..|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~~G 226 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADG 226 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCTTC
T ss_pred chHHHHhhhhhccCHHHHHHHHh--cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCCCC
Confidence 35678999999999999999999 8999988 689999999999997 89999999999999997 789999
Q ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCCC
Q 003814 346 ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 424 (793)
Q Consensus 346 ~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g~ 424 (793)
.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++.+++ .|.||||+|+..|+
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999998865 58999999999886
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=7.1e-22 Score=204.66 Aligned_cols=143 Identities=23% Similarity=0.170 Sum_probs=128.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccc-cCCChHHH
Q 003814 238 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALC 316 (793)
Q Consensus 238 d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d-~~G~TpLh 316 (793)
+.+|+||||+||..|+.++++.|++ +.+++.+ |..|.||||+||..|+.++|++|++ .|++++.+| ..|.||||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSCCCHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCcCCCCCCCCHHH
Confidence 3568899999999999999999998 4455554 8999999999999999999999999 899999998 78999999
Q ss_pred HHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHH
Q 003814 317 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 396 (793)
Q Consensus 317 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~ 396 (793)
+|+..|+.++|++|+++|++++ .+|..|.||||+|+..++ ...+.||||+|+..|+.+++++
T Consensus 117 ~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~ 178 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINV 178 (244)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHH
Confidence 9999999999999999999997 799999999999986432 2467899999999999999999
Q ss_pred HHhhCcc
Q 003814 397 LIQHHPQ 403 (793)
Q Consensus 397 LL~~~~~ 403 (793)
|++...+
T Consensus 179 L~~~~~~ 185 (244)
T 3ui2_A 179 LEGQVFE 185 (244)
T ss_dssp HHHHHEE
T ss_pred HHHhccc
Confidence 9987544
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=3.5e-22 Score=203.48 Aligned_cols=127 Identities=22% Similarity=0.253 Sum_probs=65.0
Q ss_pred CCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhC-CCCCCCCCCCCCCCHHHHH
Q 003814 274 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK-NRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 274 ~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-g~~~~~~~~~~G~TpLh~A 352 (793)
..|.||||+||..|+.++|++|++ .|++++.+|..|.||||+|+..|+.++|++|+++ |++++ .+|..|.||||+|
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~tpL~~A 147 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLD--NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTALHAA 147 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSCCHHHHH
T ss_pred cccccccccccccCcHHHHHHHHh--CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCCCHHHHH
Confidence 344555555555555555555555 4555555555555555555555555555555555 55543 4555555555555
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcc
Q 003814 353 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ 403 (793)
Q Consensus 353 a~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~ 403 (793)
+..|+.+++++|+++|++++.++.+|.||||+|+..++.++++.|++.++.
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 555555555555555555555555555555555555555555555555443
No 99
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=1e-21 Score=183.99 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=112.1
Q ss_pred CCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCch
Q 003814 301 PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE 380 (793)
Q Consensus 301 gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t 380 (793)
|+|+ .+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 78 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS 78 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence 5667 789999999999999999999999999999987 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHhCC
Q 003814 381 LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 423 (793)
Q Consensus 381 ~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~~g 423 (793)
|||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..+
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~ 120 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDES 120 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhcc
Confidence 999999999999999999999986 899999999999998654
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=207.76 Aligned_cols=142 Identities=18% Similarity=0.093 Sum_probs=122.1
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCcccccc-----CCCCCchHHHHHHHh---CcHHHHHHHHhcCCCCcccccccCC
Q 003814 240 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVR-----ISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKVG 311 (793)
Q Consensus 240 ~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~-----~d~~g~TpLh~Aa~~---g~~eiVk~LL~~~~gad~~~~d~~G 311 (793)
.+.++||.|+..|+.+.++.|++.+.+ ++.. .+..|.||||+|+.. |+.++|++|++ .|++++.+|..|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gadvn~~d~~G 226 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAADG 226 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH--HSSCTTCCCTTC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh--cCCCCCCCCCCC
Confidence 345789999999999999999976554 3331 378999999999997 89999999999 799999999999
Q ss_pred ChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCCh
Q 003814 312 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY 391 (793)
Q Consensus 312 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~ 391 (793)
+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999999999999997 8999999999999999999999999999876 588999999988863
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=5.3e-22 Score=202.11 Aligned_cols=139 Identities=22% Similarity=0.229 Sum_probs=113.9
Q ss_pred ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCC-CCcccccccCCCh
Q 003814 235 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMT-PEDLALRNKVGNT 313 (793)
Q Consensus 235 ~~~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~-gad~~~~d~~G~T 313 (793)
+..+..|+||||+||..|+.++++.|++.+. +++.+ |..|.||||+||..|+.++|++|++ . |++++.+|..|+|
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~g~~~~~~d~~g~t 142 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRV-GVNGL-DKAGSTALYWACHGGHKDIVEMLFT--QPNIELNQQNKLGDT 142 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHTT--STTCCCCCCCTTSCC
T ss_pred cccccccccccccccccCcHHHHHHHHhCCC-Ccccc-CCCCCCHHHHHHHcCCHHHHHHHHc--CCCCCccccCCCCCC
Confidence 4456678899999999999999999998654 45544 8899999999999999999999999 6 9999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccC
Q 003814 314 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR 378 (793)
Q Consensus 314 pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g 378 (793)
|||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.++++.|++.|++.+..+.++
T Consensus 143 pL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 9999999999999999999999997 799999999999999999999999999999887766543
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=4.4e-21 Score=176.18 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=104.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHH
Q 003814 238 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF 317 (793)
Q Consensus 238 d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~ 317 (793)
+..|.||||+|+..|+.+++++|++.+. +++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRT-LEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSC-CTTSSCHHHHHHHTTCHHHHHHHHT--TTCCTTCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCC-CcCcc-CCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHH
Confidence 4567899999999999999999998665 44544 8899999999999999999999999 899999999999999999
Q ss_pred HHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 003814 318 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEM 360 (793)
Q Consensus 318 Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~ei 360 (793)
|+..|+.+++++|+++|++++ .+|..|.||||+|+..+..++
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCHHHHHH
Confidence 999999999999999999986 799999999999954444443
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=9.9e-20 Score=192.32 Aligned_cols=164 Identities=20% Similarity=0.093 Sum_probs=137.5
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCcccc----c------------------cC-------CCCCchHHHHHHHhC
Q 003814 237 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVC----V------------------RI-------SRNQDTALHIAAGAR 287 (793)
Q Consensus 237 ~d~~g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~----~------------------~~-------d~~g~TpLh~Aa~~g 287 (793)
.|..+.++|+.+...|+....+.+-..-+.... . .. +....++||.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 566778899999999987766654321110000 0 00 011246899999999
Q ss_pred cHHHHHHHHhcCCCCc------ccccccCCChHHHHHHHh---CcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCH
Q 003814 288 RTLFVQELVNLMTPED------LALRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK 358 (793)
Q Consensus 288 ~~eiVk~LL~~~~gad------~~~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~ 358 (793)
+.+.++.+++ .|.+ ++..|..|.||||+|+.. |+.+++++|+++|++++ .+|..|.||||+|+..|+.
T Consensus 142 d~~~~~~ll~--~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~TpLh~A~~~g~~ 218 (278)
T 1dcq_A 142 DIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTDNA 218 (278)
T ss_dssp CHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHHHHHHTTCH
T ss_pred ccHHHHHHHH--hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCCCHHHHHHHcCCH
Confidence 9999999999 7888 445588999999999999 89999999999999997 7899999999999999999
Q ss_pred HHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcc
Q 003814 359 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ 403 (793)
Q Consensus 359 eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~ 403 (793)
++|++|+++|++++.+|.+|.||||+|+..|+.+++++|++.+++
T Consensus 219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999875
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=5.3e-20 Score=160.11 Aligned_cols=93 Identities=28% Similarity=0.408 Sum_probs=78.0
Q ss_pred CCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHH
Q 003814 275 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 354 (793)
Q Consensus 275 ~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~ 354 (793)
+|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.+|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH
Confidence 47888888888888888888888 788888888888888888888888888888888888876 678888888888888
Q ss_pred cCCHHHHHHHHhcCCC
Q 003814 355 LGHKEMIWYLYSVTKE 370 (793)
Q Consensus 355 ~g~~eiv~~Ll~~gad 370 (793)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 8888888888888874
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=7.9e-20 Score=209.38 Aligned_cols=137 Identities=18% Similarity=0.115 Sum_probs=100.4
Q ss_pred CCchHHHHHHHhCcHHHHHHHHhcCCCCccccc------ccCCChHHHHHHH---hCcHHHHHHHHhCCCCCCCCCCCCC
Q 003814 275 NQDTALHIAAGARRTLFVQELVNLMTPEDLALR------NKVGNTALCFAAV---SGVTKIAEVMVNKNRELPSIRGNKG 345 (793)
Q Consensus 275 ~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~------d~~G~TpLh~Aa~---~g~~~iv~~Ll~~g~~~~~~~~~~G 345 (793)
...+.||.|+..|+.+.|+.|++ .|++++.+ |..|.||||+|+. .|+.++|++|+++|++++ .+|..|
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~--~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn-~~d~~g 207 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADG 207 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHH--TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTT-CCCSSS
T ss_pred ccHHHHHHHHhccCHHHHHHHHh--hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCC-ccCCCC
Confidence 34467888888888888888888 67887766 7778888888865 788888888888888876 677888
Q ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccccccCCCCCCHHHHHHh
Q 003814 346 ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 421 (793)
Q Consensus 346 ~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLh~A~~ 421 (793)
.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++. + .+|+|.+..
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-~------~~~~h~~~~ 276 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT-F------AFPLHVDYS 276 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC-C------CCcceeecc
Confidence 88888888888888888888888888888888888888888888888888888888775 2 257776654
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=8.2e-20 Score=200.04 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=115.4
Q ss_pred CCCCchHHHHHHHh-CcHHHHHHHHhcCCCCcccccc--cCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHH
Q 003814 273 SRNQDTALHIAAGA-RRTLFVQELVNLMTPEDLALRN--KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL 349 (793)
Q Consensus 273 d~~g~TpLh~Aa~~-g~~eiVk~LL~~~~gad~~~~d--~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpL 349 (793)
+..+.||||.|+.. |+.++|+.|++ .|++++..| ..|.||||+|+..|+.++|++|+++|++++ .+|..|.|||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~--~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpL 272 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALA--HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPL 272 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHH--TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHH--cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHH
Confidence 34567899999999 99999999999 899999888 889999999999999999999999999987 7889999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcCChhHHHHHHhhCcccc--cccCCCCCCHHHHHHhC
Q 003814 350 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLA--MARDGNGETALHVLARK 422 (793)
Q Consensus 350 h~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g~~eiv~~LL~~~~~~~--~~~d~~G~TpLh~A~~~ 422 (793)
|+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++.+.... ...+..+.|+++.+...
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764321 23455678888876654
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=2.6e-19 Score=189.04 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=116.5
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCccc----cccCCCCCchHHHHHHHh---CcHHHHHHHHhcCCCCcccccccCCCh
Q 003814 241 SYAPLHLAALKGDWDFARNFFNLNPEAV----CVRISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKVGNT 313 (793)
Q Consensus 241 g~T~Lh~Aa~~G~~~~v~~LL~~~~~~~----~~~~d~~g~TpLh~Aa~~---g~~eiVk~LL~~~~gad~~~~d~~G~T 313 (793)
..++||.|+..|+.+.++.+++.+.+.. ....+..|.||||+|+.. |+.++|++|++ +|++++.+|..|+|
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~--~ga~in~~d~~g~T 207 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGKGST 207 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSCTTCCCTTCCC
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH--CCCCccccCCCCCC
Confidence 3479999999999999999998766432 122378899999999999 99999999999 79999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 003814 314 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE 371 (793)
Q Consensus 314 pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~ 371 (793)
|||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 208 pLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 208 ALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999997 79999999999999999999999999999863
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.7e-19 Score=197.45 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=116.6
Q ss_pred ccCCCCCchHHHHHHHc-CCHHHHHHHHhcCCccccccCC--CCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCC
Q 003814 235 ERNCFTSYAPLHLAALK-GDWDFARNFFNLNPEAVCVRIS--RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG 311 (793)
Q Consensus 235 ~~~d~~g~T~Lh~Aa~~-G~~~~v~~LL~~~~~~~~~~~d--~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G 311 (793)
+..+..+.|+||.|+.. |+.++++.|++.+. +++.. + ..|.||||+|+..|+.++|++|++ +|++++.+|..|
T Consensus 193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga-dvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~--~Gadvn~~d~~G 268 (368)
T 3jue_A 193 DLGSLHPGALLFRASGHPPSLPTMADALAHGA-DVNWV-NGGQDNATPLIQATAANSLLACEFLLQ--NGANVNQADSAG 268 (368)
T ss_dssp ----CCHHHHHHHHTSSSCCHHHHHHHHHTTC-CTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTS
T ss_pred ccccCCCCcHHHHHHHccCCHHHHHHHHHcCC-CCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCCCCCC
Confidence 44455677999999999 99999999998655 44443 5 789999999999999999999999 899999999999
Q ss_pred ChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCcccccCchHHHHHHHc
Q 003814 312 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE---EDLKEEDRIELLVAVIDA 388 (793)
Q Consensus 312 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad---~n~~~~~g~t~Lh~A~~~ 388 (793)
+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|++.+.. ....+..+.|+++.+...
T Consensus 269 ~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 269 RGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred CCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 999999999999999999999999997 7999999999999999999999999987643 344556677887765543
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=7.6e-20 Score=165.63 Aligned_cols=107 Identities=27% Similarity=0.350 Sum_probs=92.5
Q ss_pred CCCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHH
Q 003814 272 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 351 (793)
Q Consensus 272 ~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~ 351 (793)
+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~ 81 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHL 81 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTT--TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHH
Confidence 37788899999999999999999988 788888888899999999999999999999999988886 678889999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCcccccCchH
Q 003814 352 AALLGHKEMIWYLYSVTKEEDLKEEDRIEL 381 (793)
Q Consensus 352 Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~ 381 (793)
|+..|+.+++++|+++|++++.++..|.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 999999999999999999888888877776
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=2.9e-19 Score=204.72 Aligned_cols=135 Identities=19% Similarity=0.105 Sum_probs=114.8
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCCcccccc-----CCCCCchHHHHHHH---hCcHHHHHHHHhcCCCCcccccccCCCh
Q 003814 242 YAPLHLAALKGDWDFARNFFNLNPEAVCVR-----ISRNQDTALHIAAG---ARRTLFVQELVNLMTPEDLALRNKVGNT 313 (793)
Q Consensus 242 ~T~Lh~Aa~~G~~~~v~~LL~~~~~~~~~~-----~d~~g~TpLh~Aa~---~g~~eiVk~LL~~~~gad~~~~d~~G~T 313 (793)
.+.||.|+..|+.+.++.|++.+.+ ++.. .|..|.||||+||. .|+.++|++|++ +|+++|.+|..|+|
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~-~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~--~ga~vn~~d~~g~T 209 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAADGNT 209 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCC-SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH--HSCCTTCCCSSSCC
T ss_pred HHHHHHHHhccCHHHHHHHHhhccc-ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH--cCCCCCccCCCCCc
Confidence 3789999999999999999987654 3322 26789999999977 999999999999 89999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHH
Q 003814 314 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI 386 (793)
Q Consensus 314 pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~ 386 (793)
|||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++. +|+|.+.
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~ 275 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDY 275 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCCS-CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeec
Confidence 9999999999999999999999997 7899999999999999999999999999999876 4666654
No 111
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=5.2e-19 Score=153.81 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=88.4
Q ss_pred CCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHHHHcC
Q 003814 310 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG 389 (793)
Q Consensus 310 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A~~~g 389 (793)
+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 48999999999999999999999999997 78999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhCcc
Q 003814 390 LYDVALDLIQHHPQ 403 (793)
Q Consensus 390 ~~eiv~~LL~~~~~ 403 (793)
+.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999998864
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=9.4e-19 Score=158.40 Aligned_cols=109 Identities=23% Similarity=0.244 Sum_probs=102.1
Q ss_pred ccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHHHHH
Q 003814 306 LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV 385 (793)
Q Consensus 306 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~Lh~A 385 (793)
.+|.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 578899999999999999999999999999987 7899999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHhhCcccccccCCCCCCHH
Q 003814 386 IDAGLYDVALDLIQHHPQLAMARDGNGETAL 416 (793)
Q Consensus 386 ~~~g~~eiv~~LL~~~~~~~~~~d~~G~TpL 416 (793)
+..++.+++++|+++|+++ +.++..|.+|-
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 9999999999999999996 88899998874
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=1.1e-16 Score=143.85 Aligned_cols=89 Identities=21% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHhcCCCCcccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHH
Q 003814 273 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 352 (793)
Q Consensus 273 d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~A 352 (793)
|.+|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A 97 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMA--NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFDIS 97 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCcHHHHH
Confidence 6778888888888888888888888 688888888888888888888888888888888888876 6778888888888
Q ss_pred HHcCCHHHHHHH
Q 003814 353 ALLGHKEMIWYL 364 (793)
Q Consensus 353 a~~g~~eiv~~L 364 (793)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 888888888776
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.65 E-value=3.1e-16 Score=140.88 Aligned_cols=94 Identities=21% Similarity=0.210 Sum_probs=85.5
Q ss_pred cccccccCCChHHHHHHHhCcHHHHHHHHhCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccCchHH
Q 003814 303 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELL 382 (793)
Q Consensus 303 d~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~G~TpLh~Aa~~g~~eiv~~Ll~~gad~n~~~~~g~t~L 382 (793)
.....|.+|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl 94 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH
Confidence 355678899999999999999999999999999997 7899999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHH
Q 003814 383 VAVIDAGLYDVALDL 397 (793)
Q Consensus 383 h~A~~~g~~eiv~~L 397 (793)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999999876
No 115
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=25.17 E-value=4.4e+02 Score=24.95 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhHhhccCCCC
Q 003814 636 CMVVATLIATVMFAAAFTVPGG 657 (793)
Q Consensus 636 ~~vvA~LIATVtFaA~ft~PGG 657 (793)
+.+.++|++-.++-+.+.+|.+
T Consensus 23 ~alfaAliavla~i~~Ipip~~ 44 (198)
T 4dve_A 23 SAFMTAFIIILGFLPGIPIGFI 44 (198)
T ss_dssp HHHHHHHHHHHTTSCCBCCSSS
T ss_pred HHHHHHHHHHHHHhccCCCCCC
Confidence 3466777777777777788854
No 116
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=22.22 E-value=41 Score=21.80 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.6
Q ss_pred hhhhhhhhhhcCCCchhhhccCCCc
Q 003814 72 FFHWSKSMILSNGLSVQSRYGNGLS 96 (793)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (793)
..|+||+...|.--.|....+|++|
T Consensus 12 vvhffknivsprtppp~q~kgrgls 36 (36)
T 2lug_A 12 VVHFFKNIVTPRTPPPSQGKGRGLS 36 (36)
T ss_dssp HHHHHHHHHCSSCCCCCBCTTTTTC
T ss_pred hhHhhhhccCCCCCCCcccccCCCC
Confidence 4689999999988888777778876
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=20.22 E-value=1.5e+02 Score=30.91 Aligned_cols=88 Identities=9% Similarity=-0.036 Sum_probs=43.3
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhc-CCccccccCCCCCchHHHHHHHhCcHHHHHHHHhcCCCCccc-ccccCCChH
Q 003814 237 NCFTSYAPLHLAALKGDWDFARNFFNL-NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA-LRNKVGNTA 314 (793)
Q Consensus 237 ~d~~g~T~Lh~Aa~~G~~~~v~~LL~~-~~~~~~~~~d~~g~TpLh~Aa~~g~~eiVk~LL~~~~gad~~-~~d~~G~Tp 314 (793)
.|..|...+-.....|+.+....+++. .+.......+..|.-.+..+......+-...+++...+.-.. .+|..|+..
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~V 148 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHV 148 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHH
Confidence 345555666666666666655555442 122222223666666666666666655555555532222111 245555555
Q ss_pred HHHHHHhCcH
Q 003814 315 LCFAAVSGVT 324 (793)
Q Consensus 315 Lh~Aa~~g~~ 324 (793)
+......+..
T Consensus 149 iQk~l~~~~~ 158 (351)
T 3gvo_A 149 VQKCIECVQP 158 (351)
T ss_dssp HHHHHHHSCG
T ss_pred HHHHHHhCCH
Confidence 5544444433
Done!