Query 003815
Match_columns 793
No_of_seqs 249 out of 761
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:59:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 96.8 0.0078 2.7E-07 65.1 12.9 77 195-283 127-208 (444)
2 4djk_A Probable glutamate/gamm 96.7 0.054 1.9E-06 59.6 18.9 99 194-299 131-239 (511)
3 3l1l_A Arginine/agmatine antip 96.2 0.049 1.7E-06 58.7 14.1 79 195-282 127-210 (445)
4 2jln_A MHP1; hydantoin, transp 22.5 8.1E+02 0.028 27.1 14.2 49 265-313 206-272 (501)
5 2l6p_A PHAC1, PHAC2 and PHAD g 22.2 35 0.0012 31.7 1.8 22 763-786 30-51 (124)
6 3luu_A Uncharacterized protein 17.5 44 0.0015 29.6 1.4 20 762-781 34-53 (101)
7 2l6n_A Uncharacterized protein 16.9 53 0.0018 30.8 1.9 15 763-777 37-51 (132)
8 2rdd_B UPF0092 membrane protei 13.3 2.2E+02 0.0074 21.0 4.0 36 474-509 1-36 (37)
9 1mhm_A Adometdc, samdc, S-aden 13.0 91 0.0031 33.1 2.5 39 699-742 44-86 (288)
10 3ghp_A Cellulosomal scaffoldin 12.4 55 0.0019 33.4 0.6 13 239-251 46-58 (227)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.83 E-value=0.0078 Score=65.08 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhhhccccccccc---hhhHHHHHHHHHHhhhhHhhhccCccccee-cChHHHHHHHHhcCcce-eeeh
Q 003815 195 PITCFIIVCLFALQHYGTHRVGFL---FAPVVLIWLLCISALGLYNIIHWNSHVYQA-LSPYYMFKFLKKTRKRG-WMSL 269 (793)
Q Consensus 195 ~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~~WF~~i~~~Giyni~~~~p~Vl~A-lnP~ya~~f~~~~g~~g-~~~L 269 (793)
.+++++++++..+.-+|....+++ +..+.++=++.+.+.|+... +|+-+.. ++|. +..| +..+
T Consensus 127 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~~~ 194 (444)
T 3gia_A 127 ITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIFAS 194 (444)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHHHH
Confidence 467888888888999998766654 44444444444445555443 4543332 3332 1112 2234
Q ss_pred hhhhhhhcchhhhh
Q 003815 270 GGILLCITGSEAMF 283 (793)
Q Consensus 270 G~V~L~iTGaEALy 283 (793)
...+.+.+|-|+.-
T Consensus 195 ~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 195 AIFFLSYMGFGVIT 208 (444)
T ss_dssp HHGGGGGTHHHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 44567889999763
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.74 E-value=0.054 Score=59.56 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHhhhccccccccchhhH----HHHHHHHHHhhhhHhhhccCcccc----eecChHHHHHHHHhcCcce
Q 003815 194 IPITCFIIVCLFALQHYGTHRVGFLFAPV----VLIWLLCISALGLYNIIHWNSHVY----QALSPYYMFKFLKKTRKRG 265 (793)
Q Consensus 194 v~is~~ILv~LF~iQ~~GT~kvg~~FgPI----m~~WF~~i~~~Giyni~~~~p~Vl----~AlnP~ya~~f~~~~g~~g 265 (793)
..+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.+ .+..+
T Consensus 131 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 203 (511)
T 4djk_A 131 TIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVGT 203 (511)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTTT
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccchH
Confidence 45788888888999999988777654332 222344555667665554333211 1222211 12345
Q ss_pred eeehhhhhhhhcchhhhhccCCCC--CcchhhhhhH
Q 003815 266 WMSLGGILLCITGSEAMFADLGHF--SYAAIQIAFT 299 (793)
Q Consensus 266 ~~~LG~V~L~iTGaEALyADlGHF--g~~~Ir~aw~ 299 (793)
|..+..++.+.+|-|+.-.=-+-. .+|.+..|=.
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 777888999999999864333333 2445554443
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.21 E-value=0.049 Score=58.74 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHhhhccccccccc---hhhHHHHHHHHHHhhhhHhhhccCcccc-eecChHHHHHHHHhcCcce-eeeh
Q 003815 195 PITCFIIVCLFALQHYGTHRVGFL---FAPVVLIWLLCISALGLYNIIHWNSHVY-QALSPYYMFKFLKKTRKRG-WMSL 269 (793)
Q Consensus 195 ~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~~WF~~i~~~Giyni~~~~p~Vl-~AlnP~ya~~f~~~~g~~g-~~~L 269 (793)
.+++++++++..+--+|....+++ +.++.++=++.+.+.| +...+|+.+ ..++|.-. .+..+ +..+
T Consensus 127 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 197 (445)
T 3l1l_A 127 ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG---WFWFRGETYMAAWNVSGL------GTFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT---STTCCCCCCCCC-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChhhcccccCccCC------ccHHHHHHHH
Confidence 367777778888888888777665 4444433333333334 333355543 34444210 00111 2334
Q ss_pred hhhhhhhcchhhh
Q 003815 270 GGILLCITGSEAM 282 (793)
Q Consensus 270 G~V~L~iTGaEAL 282 (793)
..++.+.+|-|+.
T Consensus 198 ~~~~~af~G~e~~ 210 (445)
T 3l1l_A 198 NVTLWSFIGVESA 210 (445)
T ss_dssp HHHHHTTTTTTHH
T ss_pred HHHHHHHHhHHHH
Confidence 5567778898865
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=22.53 E-value=8.1e+02 Score=27.07 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=27.6
Q ss_pred eeeehhhhhhhhcchh---hhhccCCCCCcchhh------------h---hhHHHHHHHHHHhhccc
Q 003815 265 GWMSLGGILLCITGSE---AMFADLGHFSYAAIQ------------I---AFTFLVYPALILAYMGQ 313 (793)
Q Consensus 265 g~~~LG~V~L~iTGaE---ALyADlGHFg~~~Ir------------~---aw~~~V~P~LlL~Y~GQ 313 (793)
+|-.+.++.+++...= ..-+|...|.|++-. . +++....|.+++.-+|=
T Consensus 206 ~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~ 272 (501)
T 2jln_A 206 GMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGA 272 (501)
T ss_dssp CSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544322 447899999876644 2 33445566665555553
No 5
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=22.15 E-value=35 Score=31.70 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=15.5
Q ss_pred HHHHhhhcCCCCccccCCCCCeEE
Q 003815 763 YNFLRRNCRGPDVALKVPPVSLLE 786 (793)
Q Consensus 763 Y~FLRkNcR~~~~~L~IPh~~LlE 786 (793)
|.|||.||+.+...-. .+++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5899999999875543 555543
No 6
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=17.52 E-value=44 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=10.4
Q ss_pred HHHHHhhhcCCCCccccCCC
Q 003815 762 GYNFLRRNCRGPDVALKVPP 781 (793)
Q Consensus 762 ~Y~FLRkNcR~~~~~L~IPh 781 (793)
=|.|||.||+.+...-.-+.
T Consensus 34 ~~~wLRd~c~ca~c~~~~t~ 53 (101)
T 3luu_A 34 TFEHLRVECPCAECKGHTPD 53 (101)
T ss_dssp EHHHHHHTCCCC--------
T ss_pred CHHHHHhhCCChhhcCccCC
Confidence 37899999998766544333
No 7
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=16.94 E-value=53 Score=30.85 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=12.2
Q ss_pred HHHHhhhcCCCCccc
Q 003815 763 YNFLRRNCRGPDVAL 777 (793)
Q Consensus 763 Y~FLRkNcR~~~~~L 777 (793)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 589999999976553
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=13.34 E-value=2.2e+02 Score=21.00 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 003815 474 GAWLPILLALFLTTIMFVWHYATIKKYEFDLHNKVS 509 (793)
Q Consensus 474 GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 509 (793)
|||..++.-++++.+||..-.-..+|.+.+.++-++
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~m~~ 36 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMD 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTGGG
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
No 9
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=13.03 E-value=91 Score=33.14 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=0.0
Q ss_pred ceeeeeecCCCCccchhhhhhhhHHHHHHHHHHH----HcCeEEEeee
Q 003815 699 RRVRFAIDDQSDTDAQSEINLQSQQELEDLFAAQ----QAGTAFILGH 742 (793)
Q Consensus 699 ~~~~f~~~~~~~~~~~~~~~~~v~~El~~L~~A~----eaGVvYIlG~ 742 (793)
.|.+|.-|+. +...+..-+||.+.|++.. ..|.+|++|+
T Consensus 44 sRknf~fP~~-----Q~~pH~sf~eEV~~L~~~F~~~~~~G~aY~~G~ 86 (288)
T 1mhm_A 44 TRGSFIFPGA-----QSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGS 86 (288)
T ss_dssp EECC----------------CCHHHHHHHHHHHHTTSTTCEEEEEESS
T ss_pred ecccCCCccc-----CCCCcCCHHHHHHHHHHHhcccCCCceeEEeCC
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=12.42 E-value=55 Score=33.40 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=0.0
Q ss_pred hccCcccceecCh
Q 003815 239 IHWNSHVYQALSP 251 (793)
Q Consensus 239 ~~~~p~Vl~AlnP 251 (793)
++|||.||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
Done!