Query 003817
Match_columns 793
No_of_seqs 249 out of 761
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 05:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003817.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003817hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 17.9 27 0.002 32.0 2.5 120 304-437 12-133 (173)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 14.4 47 0.0034 21.4 2.1 20 475-494 5-24 (27)
3 d1or7a2 a.177.1.1 (A:-1-111) S 12.7 52 0.0038 26.7 2.7 24 751-774 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 10.1 56 0.0041 24.8 1.8 40 304-346 15-54 (57)
5 d1jl0a_ d.156.1.1 (A:) S-adeno 7.8 50 0.0036 33.2 0.7 29 715-743 120-148 (325)
6 g1mhm.1 d.156.1.1 (B:,A:) S-ad 6.1 1.2E+02 0.0085 30.3 2.5 25 718-742 116-144 (323)
7 d1krha2 c.25.1.2 (A:206-338) B 5.5 2.1E+02 0.015 23.3 3.5 24 361-384 21-44 (133)
8 d1biha4 b.1.1.4 (A:307-395) He 5.3 1.2E+02 0.0087 23.1 1.7 58 526-594 17-74 (89)
9 d2bnma1 a.35.1.3 (A:6-76) Hydr 5.1 82 0.006 24.1 0.5 12 89-100 40-51 (71)
10 d1iray2 b.1.1.4 (Y:102-204) Ty 5.0 1.5E+02 0.011 23.8 2.1 57 541-597 22-81 (103)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=17.93 E-value=27 Score=32.00 Aligned_cols=120 Identities=7% Similarity=0.046 Sum_probs=69.8
Q ss_pred HHHHHhhccc--hhHhhcCccccccCcccccccccchhHHHHHHHHHHHHHHhHHhHhHhHHHHHHHHcCCCCceeEEec
Q 003817 304 PALILAYMGQ--AAYLSKHHETNYQISFFVSVPESVRWPVLVVAILASIVGSQAIISGTFSIINQSQSLGCFPRVKVVHT 381 (793)
Q Consensus 304 P~LlL~Y~GQ--aA~ll~~p~~~~~npFy~~~P~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPr~kI~hT 381 (793)
|-|++|.+|+ +|+++++- |+.-+-+-. =..+.|+ ++-.+.-++||+.. ++-+++++|.+-+-. .
T Consensus 12 pWL~i~l~~~~~~a~ii~~F-e~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~ 77 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGF-ESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---W 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---H
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---H
Confidence 4444555554 46666654 433332211 1356676 67788888999874 888999999643211 1
Q ss_pred CCCccceeeechhHHHHHHHhheeEEEecCcchhhhhhhcchhhHHHHHHHHHHHH
Q 003817 382 SDKIHGQIYIPEINWVLMILCIAVTIGFRDTKHIGNASGLAVMTVMLVTTCLTALV 437 (793)
Q Consensus 382 S~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v 437 (793)
-+...-++.+-.+|=+.+-..+.....++....++-+=|++...+|++.+++=+++
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~l 133 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAML 133 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233456677777666655555444456655666666666666666666554443
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.40 E-value=47 Score=21.37 Aligned_cols=20 Identities=25% Similarity=0.725 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 003817 475 AWLPILLALFLTTIMFVWHY 494 (793)
Q Consensus 475 GW~pl~ia~i~~~iM~~W~~ 494 (793)
||+.|+.-..-.+-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888877777777888753
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=12.75 E-value=52 Score=26.68 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHHhhhcCCCC
Q 003817 751 SSLLKRLAINFGYNFLRRNCRGPD 774 (793)
Q Consensus 751 Ss~lKKivIn~~Y~FLRkNcR~~~ 774 (793)
.+|+.+++-|.+++++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998764
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.10 E-value=56 Score=24.77 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=26.6
Q ss_pred HHHHHhhccchhHhhcCccccccCcccccccccchhHHHHHHH
Q 003817 304 PALILAYMGQAAYLSKHHETNYQISFFVSVPESVRWPVLVVAI 346 (793)
Q Consensus 304 P~LlL~Y~GQaA~ll~~p~~~~~npFy~~~P~~~~~P~~vlAt 346 (793)
-++++--++=+.|+.++. . .|.-|.++|+.+.|-++-+.|
T Consensus 15 ~~i~i~~~s~~~y~~E~~-~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 15 LVIVLLAGSYLAVLAERG-A--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHTT-S--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcC-C--CCccccccchhhhhheeeeec
Confidence 334444455566777765 3 344599999999998776544
No 5
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.80 E-value=50 Score=33.15 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.7
Q ss_pred hhhhhhhHHHHHHHHHHHHcCeEEEeeee
Q 003817 715 SEINLQSQQELEDLFAAQQAGTAFILGHS 743 (793)
Q Consensus 715 ~~~~~~v~~El~~L~~A~eaGVvYIlG~~ 743 (793)
...+.+-++|.+.|++....|-.|++|+-
T Consensus 120 ~~pH~sf~~Ev~~L~~~f~~G~aY~~G~~ 148 (325)
T d1jl0a_ 120 GYPHRNFQEEIEFLNAIFPNGAGYCMGRM 148 (325)
T ss_dssp CTTCSSHHHHHHHHHTTCSSEEEEEESCT
T ss_pred CcccCCHHHHHHHHHHhCCCCceEEecCC
Confidence 33446689999999999999999999974
No 6
>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=6.08 E-value=1.2e+02 Score=30.26 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHH----cCeEEEeee
Q 003817 718 NLQSQQELEDLFAAQQ----AGTAFILGH 742 (793)
Q Consensus 718 ~~~v~~El~~L~~A~e----aGVvYIlG~ 742 (793)
+.+-+||.+.|++..+ .|..|++|+
T Consensus 116 H~sf~eEv~~L~~~f~~~~~~g~ay~~G~ 144 (323)
T g1mhm.1 116 HRHFSEEVAVLDGYFGKLAAGSKAVIMGS 144 (323)
T ss_dssp -CCHHHHHHHHHHHHTTSTTCEEEEEESS
T ss_pred ccCHHHHHHHHHHHhccccCCceeEEeCC
Confidence 3468999999999997 499999995
No 7
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=5.47 E-value=2.1e+02 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=10.0
Q ss_pred hHHHHHHHHcCCCCceeEEecCCC
Q 003817 361 FSIINQSQSLGCFPRVKVVHTSDK 384 (793)
Q Consensus 361 FSi~~Qai~Lg~fPr~kI~hTS~~ 384 (793)
.|+++++.+.+.-++++++|..+.
T Consensus 21 ~s~l~~~~~~~~~~~i~l~~~~r~ 44 (133)
T d1krha2 21 LSMLQVLEQKGSEHPVRLVFGVTQ 44 (133)
T ss_dssp HHHHHHHHHHCCSSCEEEEEEESS
T ss_pred HHHHHHHHHcCCCCceEEEEeecc
Confidence 344444444444444444444443
No 8
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}
Probab=5.35 E-value=1.2e+02 Score=23.12 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCcEEEEeCCCCCcccchhhhhhhccccceEEEEEEEEEecccccCCCccEEEEEecCCCCcEEEEEEE
Q 003817 526 PGIGLVFTDLTSGIPANFSRFVTNLPAFHRTLVFVCVKSVPVPHVPPAERYLVGRVGPAAHRSYRCIVR 594 (793)
Q Consensus 526 pG~~vf~t~~~~~vP~~~~h~l~~~~~lh~~~vfl~i~~~~vP~V~~~eR~~v~~~~~~~~~~yr~~~r 594 (793)
.|--+-++=...|.|+.-..+.++...+++--..+. +..+.+..+...+.|.|+|+++
T Consensus 17 ~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~a~ 74 (89)
T d1biha4 17 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT-----------DSGLVIKGVKNGDKGYYGCRAT 74 (89)
T ss_dssp TTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEE-----------TTEEEESSCCSTTCEEEEEEEE
T ss_pred CCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEe-----------eeeEEECCCChhhCEEEEEEEE
No 9
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=5.12 E-value=82 Score=24.07 Aligned_cols=12 Identities=50% Similarity=0.830 Sum_probs=0.0
Q ss_pred CCCChhHHHHHh
Q 003817 89 NGEGGTFALYSS 100 (793)
Q Consensus 89 ~GEGG~fALysL 100 (793)
|||||-+.|..|
T Consensus 40 ngeggeltltql 51 (71)
T d2bnma1 40 NGEGGELTLTQL 51 (71)
T ss_dssp TTTCTTCBHHHH
T ss_pred cCCCceeeHHHH
No 10
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.04 E-value=1.5e+02 Score=23.79 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred cchhhhhhhccccceEEEEEEEEEe---cccccCCCccEEEEEecCCCCcEEEEEEEEee
Q 003817 541 ANFSRFVTNLPAFHRTLVFVCVKSV---PVPHVPPAERYLVGRVGPAAHRSYRCIVRYGY 597 (793)
Q Consensus 541 ~~~~h~l~~~~~lh~~~vfl~i~~~---~vP~V~~~eR~~v~~~~~~~~~~yr~~~ryGy 597 (793)
+.+.++-....-..++.|+-.=+.+ ..-++..+..+.+..+...+.|.|+|.+++.|
T Consensus 22 p~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 81 (103)
T d1iray2 22 PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTY 81 (103)
T ss_dssp TTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEE
T ss_pred CCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECc
Done!